Query 038494
Match_columns 1209
No_of_seqs 455 out of 5340
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 20:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.1E-42 2.4E-46 413.4 21.9 313 162-499 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.1E-35 1.4E-39 396.7 21.0 314 155-498 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 9.5E-35 3.2E-39 349.9 16.1 283 161-491 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.3E-31 4.4E-36 330.1 23.8 310 157-496 122-450 (591)
5 1ziw_A TOLL-like receptor 3; i 100.0 7.1E-30 2.4E-34 321.3 31.3 580 524-1165 9-620 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-29 4.7E-34 314.2 31.8 525 522-1165 14-556 (606)
7 3rgz_A Protein brassinosteroid 100.0 7.8E-30 2.7E-34 323.2 29.7 541 539-1171 98-721 (768)
8 3rgz_A Protein brassinosteroid 100.0 2E-29 6.9E-34 319.4 26.2 597 518-1171 99-744 (768)
9 3t6q_A CD180 antigen; protein- 100.0 6.5E-29 2.2E-33 308.1 29.9 530 523-1165 16-558 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-28 5.6E-33 304.5 27.2 511 516-1139 29-557 (606)
11 3t6q_A CD180 antigen; protein- 100.0 4.6E-28 1.6E-32 300.5 30.8 514 516-1139 30-559 (606)
12 1ziw_A TOLL-like receptor 3; i 100.0 3.1E-28 1.1E-32 306.2 29.6 542 516-1140 22-622 (680)
13 2z63_A TOLL-like receptor 4, v 100.0 3.9E-27 1.3E-31 290.2 26.7 133 1015-1165 394-529 (570)
14 2z81_A CD282 antigen, TOLL-lik 99.9 5.5E-26 1.9E-30 278.3 29.9 173 524-707 10-187 (549)
15 3j0a_A TOLL-like receptor 5; m 99.9 8.6E-26 2.9E-30 289.3 29.1 152 517-670 22-184 (844)
16 3j0a_A TOLL-like receptor 5; m 99.9 5.8E-25 2E-29 281.5 31.3 510 522-1165 7-537 (844)
17 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-24 5.6E-29 270.9 32.2 526 527-1164 39-577 (635)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-24 3.9E-29 264.4 24.9 141 522-670 3-148 (520)
19 2z63_A TOLL-like receptor 4, v 99.9 1.7E-24 5.7E-29 266.6 26.6 481 525-1171 13-510 (570)
20 2z81_A CD282 antigen, TOLL-lik 99.9 3.1E-24 1.1E-28 262.7 28.2 381 517-988 24-421 (549)
21 4ecn_A Leucine-rich repeat pro 99.9 9.2E-24 3.1E-28 264.3 25.1 236 577-882 435-707 (876)
22 4eco_A Uncharacterized protein 99.9 6.5E-24 2.2E-28 262.4 21.2 239 576-883 192-468 (636)
23 4g8a_A TOLL-like receptor 4; l 99.9 6.5E-23 2.2E-27 256.4 27.1 511 516-1137 49-577 (635)
24 4eco_A Uncharacterized protein 99.9 1.9E-23 6.6E-28 258.1 18.3 131 1017-1168 488-633 (636)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-22 5.7E-27 247.3 25.8 128 1015-1165 375-508 (562)
26 4ecn_A Leucine-rich repeat pro 99.9 6.5E-23 2.2E-27 256.6 19.7 70 600-670 435-525 (876)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.7E-22 9.1E-27 245.5 24.7 461 521-1104 33-508 (562)
28 2z7x_B TOLL-like receptor 1, v 99.9 7.5E-22 2.6E-26 239.5 25.0 137 517-660 19-164 (520)
29 1o6v_A Internalin A; bacterial 99.9 6.3E-21 2.1E-25 227.3 25.2 100 564-668 65-164 (466)
30 3bz5_A Internalin-J, INLJ; leu 99.9 7.2E-21 2.5E-25 224.4 23.3 118 540-670 41-158 (457)
31 1o6v_A Internalin A; bacterial 99.9 3.7E-20 1.3E-24 220.6 27.7 342 518-988 45-386 (466)
32 4fmz_A Internalin; leucine ric 99.8 5.9E-20 2E-24 210.2 24.6 148 539-704 42-189 (347)
33 3bz5_A Internalin-J, INLJ; leu 99.8 1.9E-19 6.4E-24 212.3 27.7 165 517-705 40-204 (457)
34 1jl5_A Outer protein YOPM; leu 99.8 1.7E-20 5.7E-25 221.1 16.7 165 950-1165 256-427 (454)
35 3v47_A TOLL-like receptor 5B a 99.8 3.6E-19 1.2E-23 212.1 28.3 141 524-669 15-163 (455)
36 3v47_A TOLL-like receptor 5B a 99.8 3.9E-19 1.3E-23 211.8 26.1 186 517-704 28-224 (455)
37 4fmz_A Internalin; leucine ric 99.8 1.8E-18 6.2E-23 197.8 28.1 303 517-930 42-344 (347)
38 1jl5_A Outer protein YOPM; leu 99.8 1.7E-19 6E-24 212.4 19.0 145 539-706 9-167 (454)
39 3o6n_A APL1; leucine-rich repe 99.8 1.5E-18 5E-23 201.9 25.9 307 537-931 41-351 (390)
40 2id5_A Lingo-1, leucine rich r 99.8 9.3E-19 3.2E-23 209.7 24.7 171 522-704 14-188 (477)
41 3oja_B Anopheles plasmodium-re 99.8 4.4E-18 1.5E-22 209.1 26.1 307 537-931 47-357 (597)
42 3o6n_A APL1; leucine-rich repe 99.8 4.8E-18 1.6E-22 197.5 21.8 236 565-882 43-282 (390)
43 2id5_A Lingo-1, leucine rich r 99.8 1.8E-17 6.2E-22 198.4 23.7 295 516-883 29-331 (477)
44 3oja_B Anopheles plasmodium-re 99.7 1.8E-17 6.3E-22 203.5 19.9 301 518-883 50-356 (597)
45 3ogk_B Coronatine-insensitive 99.7 2E-18 6.7E-23 213.4 10.7 152 539-700 71-251 (592)
46 4fcg_A Uncharacterized protein 99.7 2.4E-17 8.1E-22 185.7 17.5 222 565-881 79-310 (328)
47 3ogk_B Coronatine-insensitive 99.7 1.6E-18 5.4E-23 214.2 7.9 154 539-701 110-279 (592)
48 2ft3_A Biglycan; proteoglycan, 99.7 2.2E-16 7.4E-21 179.0 21.3 123 541-671 33-158 (332)
49 1xku_A Decorin; proteoglycan, 99.7 7.5E-16 2.6E-20 174.4 25.7 152 542-707 32-186 (330)
50 2p1m_B Transport inhibitor res 99.7 1.6E-17 5.6E-22 205.3 9.4 129 563-701 101-244 (594)
51 2z80_A TOLL-like receptor 2, v 99.7 6.1E-16 2.1E-20 176.9 20.0 171 524-705 36-211 (353)
52 2p1m_B Transport inhibitor res 99.7 3.6E-17 1.2E-21 202.2 10.0 112 558-670 57-194 (594)
53 2ft3_A Biglycan; proteoglycan, 99.7 1.1E-15 3.9E-20 173.0 21.3 287 520-883 34-331 (332)
54 1xku_A Decorin; proteoglycan, 99.7 1.8E-15 6.1E-20 171.3 22.4 288 519-882 31-329 (330)
55 3zyj_A Leucine-rich repeat-con 99.7 2.4E-15 8.3E-20 177.5 23.3 171 521-704 45-219 (440)
56 3zyi_A Leucine-rich repeat-con 99.7 2.2E-15 7.6E-20 178.5 22.8 171 521-704 56-230 (452)
57 1ogq_A PGIP-2, polygalacturona 99.7 5.3E-16 1.8E-20 173.6 16.0 148 519-670 50-207 (313)
58 4fcg_A Uncharacterized protein 99.6 1.6E-15 5.5E-20 170.7 17.6 148 518-670 80-239 (328)
59 2z66_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 167.2 19.4 171 523-704 11-187 (306)
60 3g06_A SSPH2 (leucine-rich rep 99.6 3.2E-14 1.1E-18 172.4 26.3 256 519-883 40-295 (622)
61 3zyj_A Leucine-rich repeat-con 99.6 1.1E-14 3.9E-19 171.7 21.7 152 543-707 45-200 (440)
62 3zyi_A Leucine-rich repeat-con 99.6 1.1E-14 3.8E-19 172.5 21.6 152 543-707 56-211 (452)
63 2z80_A TOLL-like receptor 2, v 99.6 5.3E-15 1.8E-19 169.1 17.5 153 539-704 29-186 (353)
64 1ogq_A PGIP-2, polygalacturona 99.6 2.3E-15 8E-20 168.4 12.7 151 541-702 50-207 (313)
65 1z7x_W Ribonuclease inhibitor; 99.6 1.4E-16 4.7E-21 190.1 1.3 156 541-703 3-181 (461)
66 1ozn_A Reticulon 4 receptor; N 99.6 1.3E-14 4.4E-19 160.4 16.7 195 516-721 29-232 (285)
67 3g06_A SSPH2 (leucine-rich rep 99.6 4.5E-14 1.5E-18 171.1 22.3 258 541-932 40-297 (622)
68 1ozn_A Reticulon 4 receptor; N 99.6 1.6E-14 5.5E-19 159.6 16.0 171 522-704 14-189 (285)
69 3o53_A Protein LRIM1, AGAP0063 99.6 1.3E-14 4.6E-19 162.7 13.6 108 555-670 22-130 (317)
70 1h6u_A Internalin H; cell adhe 99.5 1.6E-13 5.4E-18 153.0 20.1 188 518-724 40-227 (308)
71 3o53_A Protein LRIM1, AGAP0063 99.5 1.4E-14 4.9E-19 162.5 10.9 245 539-887 32-277 (317)
72 2z66_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 154.1 18.6 180 516-704 25-211 (306)
73 2o6q_A Variable lymphocyte rec 99.5 2.5E-13 8.6E-18 148.5 20.3 191 520-722 17-213 (270)
74 1p9a_G Platelet glycoprotein I 99.5 3.3E-13 1.1E-17 148.8 20.4 191 519-722 10-203 (290)
75 1z7x_W Ribonuclease inhibitor; 99.5 1.3E-15 4.3E-20 181.8 0.8 182 519-705 3-212 (461)
76 2o6q_A Variable lymphocyte rec 99.5 2.6E-13 9.1E-18 148.3 19.1 178 516-704 34-217 (270)
77 2qen_A Walker-type ATPase; unk 99.5 1.6E-13 5.6E-18 156.8 17.4 297 157-492 10-349 (350)
78 1h6u_A Internalin H; cell adhe 99.5 4.2E-13 1.4E-17 149.6 18.4 152 537-707 37-188 (308)
79 1w5s_A Origin recognition comp 99.5 5.2E-13 1.8E-17 156.4 19.7 310 159-487 22-387 (412)
80 3oja_A Leucine-rich immune mol 99.5 6.6E-14 2.3E-18 166.5 11.7 148 540-704 33-181 (487)
81 3m19_A Variable lymphocyte rec 99.5 6.2E-13 2.1E-17 143.6 18.3 174 520-705 15-192 (251)
82 2z62_A TOLL-like receptor 4, v 99.5 3.6E-13 1.2E-17 148.0 16.3 194 517-722 26-232 (276)
83 2fna_A Conserved hypothetical 99.5 3E-13 1E-17 155.1 16.1 292 157-491 11-356 (357)
84 1h6t_A Internalin B; cell adhe 99.5 6.2E-13 2.1E-17 146.7 17.9 171 518-707 45-215 (291)
85 2z62_A TOLL-like receptor 4, v 99.5 1E-12 3.4E-17 144.4 19.4 171 526-705 14-190 (276)
86 2xwt_C Thyrotropin receptor; s 99.5 3.3E-13 1.1E-17 144.6 15.1 135 531-670 23-166 (239)
87 2xwt_C Thyrotropin receptor; s 99.5 3.7E-13 1.3E-17 144.2 14.9 193 517-721 29-233 (239)
88 3rfs_A Internalin B, repeat mo 99.5 1.1E-12 3.8E-17 143.4 18.8 175 517-704 39-217 (272)
89 1p9a_G Platelet glycoprotein I 99.4 1.2E-12 4E-17 144.3 16.6 174 517-704 29-207 (290)
90 1wwl_A Monocyte differentiatio 99.4 2.1E-13 7.3E-18 152.5 9.7 152 540-704 42-213 (312)
91 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.2E-17 139.4 16.6 152 517-671 33-190 (251)
92 3e6j_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 135.5 16.1 146 522-671 22-170 (229)
93 1h6t_A Internalin B; cell adhe 99.4 4.1E-12 1.4E-16 140.1 17.1 178 528-724 33-210 (291)
94 1wwl_A Monocyte differentiatio 99.4 1.2E-12 4.1E-17 146.4 13.0 106 565-670 93-211 (312)
95 3rfs_A Internalin B, repeat mo 99.4 3.1E-12 1.1E-16 139.8 16.0 154 515-671 59-216 (272)
96 2v9t_B SLIT homolog 2 protein 99.4 3.2E-12 1.1E-16 134.5 15.3 146 522-671 14-163 (220)
97 1m9s_A Internalin B; cell inva 99.4 2.5E-12 8.5E-17 155.7 15.8 172 517-707 41-212 (605)
98 2v70_A SLIT-2, SLIT homolog 2 99.4 6.3E-12 2.1E-16 132.2 15.1 146 522-671 14-164 (220)
99 2ast_B S-phase kinase-associat 99.3 2.1E-12 7.3E-17 146.5 11.3 132 563-701 64-204 (336)
100 2ast_B S-phase kinase-associat 99.3 2E-12 6.7E-17 146.8 10.5 250 567-887 47-307 (336)
101 4ezg_A Putative uncharacterize 99.3 8.4E-12 2.9E-16 128.9 13.8 144 519-670 44-191 (197)
102 3oja_A Leucine-rich immune mol 99.3 9.1E-12 3.1E-16 148.0 15.5 168 518-705 33-204 (487)
103 1xeu_A Internalin C; cellular 99.3 9.8E-12 3.3E-16 134.7 14.1 164 524-707 24-187 (263)
104 2o6s_A Variable lymphocyte rec 99.3 2.3E-11 8E-16 127.0 15.9 144 523-670 11-158 (208)
105 4ay9_X Follicle-stimulating ho 99.3 2.4E-11 8.4E-16 138.1 16.9 123 527-652 17-145 (350)
106 1m9s_A Internalin B; cell inva 99.3 1.7E-11 5.7E-16 148.5 15.6 179 527-724 29-207 (605)
107 4ezg_A Putative uncharacterize 99.3 1.5E-11 5.2E-16 127.0 13.0 149 539-704 42-193 (197)
108 4ay9_X Follicle-stimulating ho 99.3 3.4E-11 1.2E-15 136.9 16.1 119 544-668 12-136 (350)
109 1xeu_A Internalin C; cellular 99.3 3E-11 1E-15 130.9 14.0 145 517-671 39-183 (263)
110 2qby_B CDC6 homolog 3, cell di 99.3 6.7E-11 2.3E-15 136.8 17.6 287 159-474 20-338 (384)
111 2ca6_A RAN GTPase-activating p 99.2 2.6E-12 9E-17 148.7 5.2 83 563-645 28-132 (386)
112 1fnn_A CDC6P, cell division co 99.2 2.6E-10 9E-15 132.1 21.9 319 159-497 17-386 (389)
113 2xot_A Amphoterin-induced prot 99.2 2.3E-11 7.8E-16 139.0 12.3 171 522-704 21-201 (361)
114 2v1u_A Cell division control p 99.2 7E-11 2.4E-15 136.9 16.2 299 158-474 18-350 (387)
115 2qby_A CDC6 homolog 1, cell di 99.2 3.9E-11 1.3E-15 139.1 13.9 295 158-474 19-347 (386)
116 4glp_A Monocyte differentiatio 99.2 2.7E-11 9.2E-16 135.3 11.8 193 518-722 90-302 (310)
117 2v9t_B SLIT homolog 2 protein 99.2 9E-11 3.1E-15 123.3 14.9 147 544-704 14-164 (220)
118 2xot_A Amphoterin-induced prot 99.2 4.9E-11 1.7E-15 136.2 13.6 156 544-710 21-181 (361)
119 2ell_A Acidic leucine-rich nuc 99.2 4.4E-11 1.5E-15 120.1 11.4 137 566-708 23-163 (168)
120 4glp_A Monocyte differentiatio 99.2 3E-11 1E-15 134.9 11.3 136 566-707 90-239 (310)
121 2v70_A SLIT-2, SLIT homolog 2 99.2 1.6E-10 5.6E-15 121.4 15.2 147 544-704 14-165 (220)
122 3e6j_A Variable lymphocyte rec 99.2 2.3E-10 7.8E-15 121.1 15.1 148 542-704 20-171 (229)
123 2je0_A Acidic leucine-rich nuc 99.2 5.9E-11 2E-15 116.4 9.4 103 563-667 38-147 (149)
124 3cvr_A Invasion plasmid antige 99.2 3.2E-10 1.1E-14 135.5 17.4 177 519-721 59-237 (571)
125 2ca6_A RAN GTPase-activating p 99.1 3.7E-11 1.3E-15 138.9 7.9 38 787-828 272-313 (386)
126 2ell_A Acidic leucine-rich nuc 99.1 1.1E-10 3.8E-15 117.0 10.2 127 541-670 24-157 (168)
127 2wfh_A SLIT homolog 2 protein 99.1 2.8E-10 9.6E-15 116.6 13.2 120 545-670 14-136 (193)
128 4b8c_D Glucose-repressible alc 99.1 1E-10 3.6E-15 145.5 11.6 153 518-672 172-328 (727)
129 2o6s_A Variable lymphocyte rec 99.1 5E-10 1.7E-14 116.8 14.4 143 517-669 26-174 (208)
130 2chg_A Replication factor C sm 99.1 6.9E-10 2.3E-14 117.5 15.5 191 156-371 14-207 (226)
131 2je0_A Acidic leucine-rich nuc 99.1 1.7E-10 5.9E-15 113.0 9.8 124 517-644 15-149 (149)
132 3cvr_A Invasion plasmid antige 99.1 6.4E-10 2.2E-14 132.9 16.1 158 518-705 79-243 (571)
133 1w8a_A SLIT protein; signaling 99.1 3.8E-10 1.3E-14 115.7 12.1 102 568-670 30-136 (192)
134 1njg_A DNA polymerase III subu 99.1 7.2E-10 2.5E-14 119.3 15.0 184 157-371 21-231 (250)
135 1a9n_A U2A', U2A'; complex (nu 99.1 1.4E-10 4.9E-15 117.1 8.4 100 568-669 43-149 (176)
136 3qfl_A MLA10; coiled-coil, (CC 99.1 1.9E-10 6.4E-15 104.7 7.5 78 10-100 3-81 (115)
137 1a9n_A U2A', U2A'; complex (nu 99.1 3E-10 1E-14 114.8 9.5 126 517-646 17-151 (176)
138 3goz_A Leucine-rich repeat-con 99.0 1.9E-10 6.5E-15 131.5 7.7 155 542-704 23-208 (362)
139 3goz_A Leucine-rich repeat-con 99.0 4.2E-10 1.4E-14 128.6 10.5 146 555-706 10-181 (362)
140 1w8a_A SLIT protein; signaling 99.0 1E-09 3.5E-14 112.5 12.3 124 522-649 11-139 (192)
141 2wfh_A SLIT homolog 2 protein 99.0 1.7E-09 6E-14 110.7 13.3 120 522-645 13-136 (193)
142 2o6r_A Variable lymphocyte rec 99.0 2.4E-09 8.2E-14 108.3 13.1 119 523-644 11-133 (177)
143 1dce_A Protein (RAB geranylger 99.0 1.1E-09 3.8E-14 131.8 12.3 119 543-666 443-566 (567)
144 2o6r_A Variable lymphocyte rec 99.0 4.2E-09 1.4E-13 106.5 13.0 122 543-670 9-134 (177)
145 1dce_A Protein (RAB geranylger 98.9 2.6E-09 9E-14 128.5 12.5 123 568-698 442-566 (567)
146 4b8c_D Glucose-repressible alc 98.9 9.9E-10 3.4E-14 136.7 8.6 115 539-657 222-337 (727)
147 1sxj_B Activator 1 37 kDa subu 98.9 4.7E-09 1.6E-13 118.0 11.3 190 155-368 17-210 (323)
148 1ds9_A Outer arm dynein; leuci 98.9 6.8E-11 2.3E-15 122.2 -3.7 102 539-644 46-149 (198)
149 1ds9_A Outer arm dynein; leuci 98.9 9E-11 3.1E-15 121.3 -3.2 153 542-698 24-180 (198)
150 3g39_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 102.5 11.2 99 569-670 11-112 (170)
151 2r9u_A Variable lymphocyte rec 98.8 1E-08 3.5E-13 102.8 11.2 98 570-670 15-115 (174)
152 2r9u_A Variable lymphocyte rec 98.7 2.5E-08 8.6E-13 100.0 10.0 102 544-651 15-120 (174)
153 3te6_A Regulatory protein SIR3 98.7 3.6E-07 1.2E-11 99.4 18.1 172 160-338 21-212 (318)
154 3g39_A Variable lymphocyte rec 98.7 6.2E-08 2.1E-12 96.8 11.2 100 544-649 12-115 (170)
155 1iqp_A RFCS; clamp loader, ext 98.7 3.9E-08 1.3E-12 110.7 10.4 189 157-372 23-216 (327)
156 2chq_A Replication factor C sm 98.6 2.4E-07 8.2E-12 103.7 13.6 187 156-369 14-205 (319)
157 3sb4_A Hypothetical leucine ri 98.5 6.4E-07 2.2E-11 100.5 12.6 89 611-710 225-315 (329)
158 1jr3_A DNA polymerase III subu 98.5 8.2E-07 2.8E-11 101.8 13.3 195 158-369 15-222 (373)
159 1jbk_A CLPB protein; beta barr 98.4 3.4E-07 1.2E-11 93.8 8.2 153 158-333 21-194 (195)
160 2ifg_A High affinity nerve gro 98.4 6.1E-07 2.1E-11 101.7 10.4 96 572-670 13-113 (347)
161 2ifg_A High affinity nerve gro 98.3 1.9E-06 6.5E-11 97.6 10.6 92 555-649 21-116 (347)
162 4fdw_A Leucine rich hypothetic 98.3 5.6E-05 1.9E-09 86.5 22.7 121 540-669 112-235 (401)
163 3pvs_A Replication-associated 98.3 9.1E-06 3.1E-10 93.9 16.1 183 154-370 21-217 (447)
164 3bos_A Putative DNA replicatio 98.3 7.6E-07 2.6E-11 95.0 6.4 176 158-369 27-218 (242)
165 3h4m_A Proteasome-activating n 98.3 5.3E-06 1.8E-10 90.8 13.3 182 157-367 15-230 (285)
166 1hqc_A RUVB; extended AAA-ATPa 98.2 2.1E-05 7.1E-10 87.9 17.9 186 157-371 10-214 (324)
167 1sxj_D Activator 1 41 kDa subu 98.2 2.6E-06 8.8E-11 96.8 9.9 197 156-368 34-235 (353)
168 3un9_A NLR family member X1; l 98.2 2.9E-07 1E-11 104.5 1.9 152 517-670 70-249 (372)
169 3sb4_A Hypothetical leucine ri 98.2 4.1E-06 1.4E-10 93.9 11.0 166 519-698 101-327 (329)
170 2qz4_A Paraplegin; AAA+, SPG7, 98.2 4.1E-05 1.4E-09 82.5 18.5 183 158-367 5-221 (262)
171 1d2n_A N-ethylmaleimide-sensit 98.2 3E-05 1E-09 84.0 17.1 184 177-391 61-266 (272)
172 1sxj_A Activator 1 95 kDa subu 98.2 1.1E-05 3.8E-10 95.8 14.4 193 155-368 35-253 (516)
173 1sxj_E Activator 1 40 kDa subu 98.1 6.4E-06 2.2E-10 93.5 10.3 196 157-368 12-237 (354)
174 3d8b_A Fidgetin-like protein 1 98.1 4E-05 1.4E-09 86.4 16.1 186 158-369 83-296 (357)
175 3u61_B DNA polymerase accessor 98.1 1.5E-05 5E-10 89.1 12.1 182 155-367 22-215 (324)
176 3un9_A NLR family member X1; l 98.1 6.8E-07 2.3E-11 101.4 1.0 160 541-705 72-252 (372)
177 1xwi_A SKD1 protein; VPS4B, AA 98.1 8.7E-05 3E-09 82.2 17.8 189 156-369 9-224 (322)
178 3uk6_A RUVB-like 2; hexameric 98.0 3.4E-05 1.1E-09 88.0 14.7 197 158-367 43-302 (368)
179 3eie_A Vacuolar protein sortin 98.0 5.6E-05 1.9E-09 84.0 15.4 188 154-368 13-228 (322)
180 1a5t_A Delta prime, HOLB; zinc 98.0 5.2E-05 1.8E-09 84.6 14.8 166 165-367 8-204 (334)
181 1sxj_C Activator 1 40 kDa subu 98.0 2.9E-05 1E-09 87.2 12.6 185 155-364 21-208 (340)
182 3e4g_A ATP synthase subunit S, 98.0 3.2E-06 1.1E-10 82.7 3.8 45 1064-1108 82-129 (176)
183 3pfi_A Holliday junction ATP-d 98.0 8.2E-05 2.8E-09 83.6 15.7 183 157-369 27-228 (338)
184 3vfd_A Spastin; ATPase, microt 97.9 0.00013 4.5E-09 83.4 16.8 187 156-368 112-326 (389)
185 3b9p_A CG5977-PA, isoform A; A 97.9 0.0003 1E-08 77.3 19.1 190 157-368 19-233 (297)
186 4b4t_J 26S protease regulatory 97.9 0.00023 7.8E-09 79.3 17.7 181 155-361 144-354 (405)
187 3pxg_A Negative regulator of g 97.9 4.8E-05 1.6E-09 89.0 12.5 150 158-338 179-339 (468)
188 2z4s_A Chromosomal replication 97.9 2E-05 6.9E-10 91.3 9.1 186 158-367 104-305 (440)
189 2p65_A Hypothetical protein PF 97.9 1.5E-05 5.1E-10 80.8 7.1 49 158-206 21-69 (187)
190 2qp9_X Vacuolar protein sortin 97.9 0.00011 3.8E-09 82.5 14.9 185 157-368 49-261 (355)
191 3cf0_A Transitional endoplasmi 97.9 0.00017 5.6E-09 79.2 15.8 179 156-363 12-223 (301)
192 3syl_A Protein CBBX; photosynt 97.9 4.7E-05 1.6E-09 84.3 11.4 154 160-338 32-218 (309)
193 4fs7_A Uncharacterized protein 97.8 0.00033 1.1E-08 80.4 18.5 110 554-669 58-171 (394)
194 4b4t_I 26S protease regulatory 97.8 0.00053 1.8E-08 76.6 18.5 183 154-360 177-387 (437)
195 2zan_A Vacuolar protein sortin 97.8 0.00023 7.9E-09 82.5 16.4 187 156-368 131-345 (444)
196 4fdw_A Leucine rich hypothetic 97.8 0.0003 1E-08 80.4 16.9 142 520-669 181-332 (401)
197 4b4t_M 26S protease regulatory 97.8 0.00019 6.4E-09 81.4 14.7 177 155-360 177-386 (434)
198 4b4t_L 26S protease subunit RP 97.8 0.00053 1.8E-08 77.7 18.4 182 156-361 178-387 (437)
199 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.8E-10 78.9 3.9 94 789-888 61-155 (176)
200 1l8q_A Chromosomal replication 97.8 9.2E-05 3.2E-09 82.5 11.7 168 167-363 22-203 (324)
201 1qvr_A CLPB protein; coiled co 97.8 8.1E-05 2.8E-09 94.3 12.5 160 157-337 168-345 (854)
202 4b4t_H 26S protease regulatory 97.7 0.00064 2.2E-08 76.7 17.7 178 158-361 208-415 (467)
203 4b4t_K 26S protease regulatory 97.7 0.00058 2E-08 77.4 16.3 181 156-360 169-378 (428)
204 2ra8_A Uncharacterized protein 97.6 4.9E-05 1.7E-09 85.2 6.5 136 561-703 166-318 (362)
205 1lv7_A FTSH; alpha/beta domain 97.6 0.0024 8.1E-08 68.2 19.2 186 157-367 10-224 (257)
206 3pxi_A Negative regulator of g 97.5 0.0003 1E-08 88.1 12.5 150 158-338 179-339 (758)
207 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00074 2.5E-08 84.7 15.9 157 157-337 184-362 (758)
208 4fs7_A Uncharacterized protein 97.5 0.0047 1.6E-07 70.7 20.6 122 539-669 69-194 (394)
209 2gno_A DNA polymerase III, gam 97.4 0.00027 9.3E-09 77.0 9.2 146 163-337 1-152 (305)
210 1io0_A Tropomodulin; LRR prote 97.4 0.00011 3.7E-09 74.1 5.3 109 561-670 30-161 (185)
211 3rw6_A Nuclear RNA export fact 97.4 0.00013 4.6E-09 77.1 5.8 79 564-642 167-258 (267)
212 1io0_A Tropomodulin; LRR prote 97.4 0.00013 4.5E-09 73.5 5.5 107 539-645 34-161 (185)
213 3n70_A Transport activator; si 97.3 5.1E-05 1.8E-09 73.0 0.9 46 160-205 2-49 (145)
214 4gt6_A Cell surface protein; l 97.2 0.017 5.9E-07 65.9 21.8 111 555-669 51-169 (394)
215 2ce7_A Cell division protein F 97.2 0.0035 1.2E-07 72.3 15.6 179 158-361 15-221 (476)
216 2ra8_A Uncharacterized protein 97.2 0.0003 1E-08 78.8 6.5 126 539-670 170-317 (362)
217 4gt6_A Cell surface protein; l 97.2 0.039 1.3E-06 62.9 24.3 120 542-669 65-191 (394)
218 3ec2_A DNA replication protein 97.2 0.00091 3.1E-08 67.0 9.1 91 163-271 18-111 (180)
219 3hu3_A Transitional endoplasmi 97.2 0.0023 7.9E-08 74.6 13.5 181 158-367 203-414 (489)
220 2r62_A Cell division protease 97.2 0.00019 6.4E-09 77.5 4.0 177 158-362 10-219 (268)
221 2w58_A DNAI, primosome compone 97.1 0.00076 2.6E-08 69.1 8.1 90 164-272 34-127 (202)
222 1ofh_A ATP-dependent HSL prote 97.0 0.0024 8.2E-08 70.5 11.3 46 160-205 16-75 (310)
223 3cf2_A TER ATPase, transitiona 97.0 0.0031 1.1E-07 77.1 12.9 177 158-361 203-407 (806)
224 2c9o_A RUVB-like 1; hexameric 96.9 0.0038 1.3E-07 72.7 12.6 48 158-205 36-88 (456)
225 3rw6_A Nuclear RNA export fact 96.9 0.00025 8.6E-09 75.1 2.3 80 587-667 167-258 (267)
226 4fcw_A Chaperone protein CLPB; 96.9 0.0015 5.2E-08 72.1 8.2 105 160-272 18-131 (311)
227 1in4_A RUVB, holliday junction 96.8 0.01 3.5E-07 65.9 14.0 182 156-367 22-222 (334)
228 1ixz_A ATP-dependent metallopr 96.7 0.022 7.4E-07 60.5 15.5 151 182-361 51-221 (254)
229 3m6a_A ATP-dependent protease 96.7 0.0066 2.3E-07 72.1 12.2 166 159-337 81-266 (543)
230 2x8a_A Nuclear valosin-contain 96.7 0.012 4.2E-07 63.0 13.1 161 157-338 8-192 (274)
231 3t15_A Ribulose bisphosphate c 96.5 0.011 3.8E-07 64.1 11.2 26 180-205 36-61 (293)
232 1iy2_A ATP-dependent metallopr 96.4 0.064 2.2E-06 57.7 17.0 177 156-361 37-245 (278)
233 3pxi_A Negative regulator of g 96.4 0.0015 5.3E-08 81.6 4.0 157 159-337 491-675 (758)
234 3io5_A Recombination and repai 96.2 0.02 6.9E-07 61.0 10.9 86 182-272 30-123 (333)
235 2cvh_A DNA repair and recombin 96.2 0.023 8E-07 58.6 11.5 86 180-272 20-117 (220)
236 2dhr_A FTSH; AAA+ protein, hex 96.2 0.02 6.9E-07 66.4 11.7 179 158-361 30-236 (499)
237 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0045 1.5E-07 66.4 5.2 69 181-272 124-194 (331)
238 1n0w_A DNA repair protein RAD5 95.9 0.027 9.1E-07 59.3 10.3 92 180-272 24-131 (243)
239 1v5w_A DMC1, meiotic recombina 95.9 0.04 1.4E-06 61.2 12.0 93 179-272 121-231 (343)
240 2qgz_A Helicase loader, putati 95.8 0.01 3.5E-07 64.8 6.8 54 163-218 132-189 (308)
241 3hr8_A Protein RECA; alpha and 95.8 0.032 1.1E-06 61.6 10.7 86 180-272 61-151 (356)
242 2z43_A DNA repair and recombin 95.6 0.041 1.4E-06 60.6 10.8 92 180-272 107-215 (324)
243 1ypw_A Transitional endoplasmi 95.6 0.028 9.7E-07 70.0 10.2 155 157-338 202-386 (806)
244 2i1q_A DNA repair and recombin 95.6 0.03 1E-06 61.8 9.3 92 180-272 98-216 (322)
245 1r6b_X CLPA protein; AAA+, N-t 95.6 0.015 5.1E-07 72.8 7.6 102 160-272 459-569 (758)
246 1xp8_A RECA protein, recombina 95.4 0.052 1.8E-06 60.3 10.7 85 180-272 74-164 (366)
247 2kjq_A DNAA-related protein; s 95.4 0.013 4.4E-07 56.1 5.0 40 179-220 35-74 (149)
248 2zr9_A Protein RECA, recombina 95.4 0.052 1.8E-06 60.1 10.5 85 180-272 61-151 (349)
249 1jr3_D DNA polymerase III, del 95.3 0.093 3.2E-06 58.4 12.4 166 173-369 11-186 (343)
250 3dm5_A SRP54, signal recogniti 95.3 0.52 1.8E-05 53.3 18.3 29 179-207 99-127 (443)
251 3kl4_A SRP54, signal recogniti 95.1 0.46 1.6E-05 53.8 17.2 89 180-270 97-189 (433)
252 1u94_A RECA protein, recombina 95.1 0.058 2E-06 59.8 9.7 85 180-272 63-153 (356)
253 2xxa_A Signal recognition part 95.1 0.87 3E-05 51.8 19.7 90 179-269 99-192 (433)
254 1qvr_A CLPB protein; coiled co 95.1 0.03 1E-06 70.7 8.2 60 159-220 558-626 (854)
255 3lda_A DNA repair protein RAD5 94.9 0.084 2.9E-06 59.4 10.4 92 180-272 178-285 (400)
256 3ice_A Transcription terminati 94.9 0.058 2E-06 59.1 8.4 97 171-272 164-273 (422)
257 2w0m_A SSO2452; RECA, SSPF, un 94.7 0.1 3.5E-06 54.3 10.1 47 180-230 23-69 (235)
258 3co5_A Putative two-component 94.7 0.0065 2.2E-07 57.9 0.6 45 160-204 5-51 (143)
259 4h09_A Hypothetical leucine ri 94.5 0.15 5E-06 57.8 11.4 123 539-668 215-341 (379)
260 2ck3_D ATP synthase subunit be 94.5 0.22 7.4E-06 56.4 12.2 101 171-272 143-265 (482)
261 1rz3_A Hypothetical protein rb 94.4 0.041 1.4E-06 55.8 5.9 44 163-206 2-48 (201)
262 1sky_E F1-ATPase, F1-ATP synth 94.4 0.11 3.8E-06 58.9 9.8 91 181-272 152-257 (473)
263 2px0_A Flagellar biosynthesis 94.4 0.12 4E-06 55.8 9.5 86 179-268 104-190 (296)
264 3bh0_A DNAB-like replicative h 94.3 0.17 5.8E-06 55.3 10.8 52 179-234 67-118 (315)
265 4a74_A DNA repair and recombin 94.2 0.15 5.3E-06 52.8 9.9 92 180-272 25-137 (231)
266 2bjv_A PSP operon transcriptio 94.1 0.027 9.3E-07 60.2 3.7 61 158-220 5-67 (265)
267 3cf2_A TER ATPase, transitiona 93.8 0.08 2.7E-06 64.8 7.6 96 156-272 474-582 (806)
268 3c8u_A Fructokinase; YP_612366 93.7 0.061 2.1E-06 54.9 5.5 52 166-219 6-59 (208)
269 1g8p_A Magnesium-chelatase 38 93.6 0.03 1E-06 62.7 3.2 49 157-205 22-70 (350)
270 4a1f_A DNAB helicase, replicat 93.5 0.37 1.2E-05 52.7 11.4 50 180-233 46-95 (338)
271 1qhx_A CPT, protein (chloramph 93.5 0.043 1.5E-06 54.4 3.7 25 181-205 4-28 (178)
272 2dr3_A UPF0273 protein PH0284; 93.4 0.3 1E-05 51.1 10.4 40 180-221 23-62 (247)
273 1j8m_F SRP54, signal recogniti 93.4 0.39 1.3E-05 51.7 11.3 89 180-270 98-190 (297)
274 1ls1_A Signal recognition part 93.4 0.26 8.9E-06 53.1 10.0 88 180-269 98-189 (295)
275 1odf_A YGR205W, hypothetical 3 93.3 0.5 1.7E-05 50.7 12.0 55 178-232 29-84 (290)
276 3kb2_A SPBC2 prophage-derived 93.3 0.051 1.7E-06 53.5 3.9 25 181-205 2-26 (173)
277 2ehv_A Hypothetical protein PH 93.3 0.29 1E-05 51.4 10.1 40 180-220 30-69 (251)
278 1pzn_A RAD51, DNA repair and r 93.2 0.23 7.9E-06 55.0 9.5 93 179-272 130-243 (349)
279 3vaa_A Shikimate kinase, SK; s 93.1 0.058 2E-06 54.6 4.0 26 180-205 25-50 (199)
280 2r44_A Uncharacterized protein 93.0 0.053 1.8E-06 60.1 3.9 45 159-205 27-71 (331)
281 2hf9_A Probable hydrogenase ni 93.0 0.1 3.4E-06 54.1 5.8 42 165-206 23-64 (226)
282 3trf_A Shikimate kinase, SK; a 92.8 0.063 2.1E-06 53.6 3.9 26 180-205 5-30 (185)
283 1vma_A Cell division protein F 92.8 0.22 7.7E-06 53.7 8.4 88 179-270 103-196 (306)
284 1fx0_B ATP synthase beta chain 92.8 0.3 1E-05 55.5 9.6 101 171-272 155-278 (498)
285 1ojl_A Transcriptional regulat 92.8 0.057 2E-06 58.7 3.8 45 160-204 3-49 (304)
286 3tqc_A Pantothenate kinase; bi 92.8 0.44 1.5E-05 51.7 10.6 60 161-220 69-132 (321)
287 2ga8_A Hypothetical 39.9 kDa p 92.7 0.14 4.7E-06 55.9 6.4 44 163-206 3-50 (359)
288 4h09_A Hypothetical leucine ri 92.7 0.35 1.2E-05 54.5 10.4 115 539-660 238-356 (379)
289 3uie_A Adenylyl-sulfate kinase 92.7 0.085 2.9E-06 53.4 4.6 29 177-205 22-50 (200)
290 2yvu_A Probable adenylyl-sulfa 92.6 0.076 2.6E-06 53.0 4.1 28 179-206 12-39 (186)
291 3lw7_A Adenylate kinase relate 92.5 0.067 2.3E-06 52.8 3.5 20 181-200 2-21 (179)
292 3nbx_X ATPase RAVA; AAA+ ATPas 92.5 0.049 1.7E-06 63.3 2.8 44 160-205 23-66 (500)
293 2zts_A Putative uncharacterize 92.5 0.21 7.2E-06 52.5 7.6 49 180-231 30-78 (251)
294 3cmu_A Protein RECA, recombina 92.5 0.28 9.6E-06 65.7 10.1 86 179-271 1426-1516(2050)
295 3rfe_A Platelet glycoprotein I 92.4 0.18 6E-06 46.7 6.0 51 571-623 12-66 (130)
296 1ly1_A Polynucleotide kinase; 92.4 0.072 2.5E-06 52.8 3.6 22 181-202 3-24 (181)
297 4eun_A Thermoresistant glucoki 92.4 0.082 2.8E-06 53.5 4.0 27 178-204 27-53 (200)
298 2wsm_A Hydrogenase expression/ 92.4 0.11 3.7E-06 53.5 5.1 43 163-205 13-55 (221)
299 1zp6_A Hypothetical protein AT 92.3 0.076 2.6E-06 53.3 3.7 25 179-203 8-32 (191)
300 1kgd_A CASK, peripheral plasma 92.3 0.085 2.9E-06 52.3 3.9 26 180-205 5-30 (180)
301 1kag_A SKI, shikimate kinase I 92.3 0.066 2.3E-06 52.7 3.1 25 181-205 5-29 (173)
302 3e70_C DPA, signal recognition 92.3 1 3.5E-05 49.1 12.8 58 178-237 127-185 (328)
303 1nks_A Adenylate kinase; therm 92.2 0.084 2.9E-06 53.0 3.9 26 181-206 2-27 (194)
304 2j37_W Signal recognition part 92.1 1.1 3.8E-05 51.8 13.5 28 179-206 100-127 (504)
305 3iij_A Coilin-interacting nucl 92.1 0.081 2.8E-06 52.5 3.5 26 180-205 11-36 (180)
306 2rhm_A Putative kinase; P-loop 92.1 0.098 3.4E-06 52.5 4.2 26 180-205 5-30 (193)
307 2b8t_A Thymidine kinase; deoxy 92.0 0.085 2.9E-06 53.9 3.6 113 179-307 11-127 (223)
308 3t61_A Gluconokinase; PSI-biol 91.9 0.077 2.6E-06 53.8 3.2 25 180-204 18-42 (202)
309 1kht_A Adenylate kinase; phosp 91.9 0.094 3.2E-06 52.6 3.8 25 181-205 4-28 (192)
310 3hws_A ATP-dependent CLP prote 91.9 0.11 3.8E-06 58.3 4.7 46 160-205 16-76 (363)
311 2ze6_A Isopentenyl transferase 91.8 0.1 3.4E-06 55.1 4.0 25 181-205 2-26 (253)
312 2ffh_A Protein (FFH); SRP54, s 91.7 0.86 2.9E-05 51.5 11.7 87 180-269 98-189 (425)
313 1y63_A LMAJ004144AAA protein; 91.7 0.11 3.8E-06 51.7 4.0 25 179-203 9-33 (184)
314 1xjc_A MOBB protein homolog; s 91.7 0.13 4.3E-06 49.9 4.2 28 179-206 3-30 (169)
315 1via_A Shikimate kinase; struc 91.7 0.088 3E-06 51.9 3.2 24 182-205 6-29 (175)
316 1zuh_A Shikimate kinase; alpha 91.7 0.11 3.7E-06 50.9 3.8 26 180-205 7-32 (168)
317 1um8_A ATP-dependent CLP prote 91.6 0.13 4.3E-06 58.2 4.9 25 181-205 73-97 (376)
318 1knq_A Gluconate kinase; ALFA/ 91.6 0.12 4.2E-06 50.8 4.3 25 180-204 8-32 (175)
319 3l0o_A Transcription terminati 91.6 0.18 6E-06 55.2 5.5 102 170-272 164-274 (427)
320 3tau_A Guanylate kinase, GMP k 91.5 0.11 3.8E-06 52.9 3.9 27 179-205 7-33 (208)
321 1gvn_B Zeta; postsegregational 91.5 0.18 6E-06 54.3 5.6 25 180-204 33-57 (287)
322 2qor_A Guanylate kinase; phosp 91.4 0.097 3.3E-06 53.2 3.3 25 180-204 12-36 (204)
323 1tue_A Replication protein E1; 91.4 0.18 6.2E-06 50.1 5.0 38 168-205 45-83 (212)
324 1ex7_A Guanylate kinase; subst 91.4 0.097 3.3E-06 51.8 3.1 25 181-205 2-26 (186)
325 2jaq_A Deoxyguanosine kinase; 91.4 0.11 3.9E-06 52.6 3.8 24 182-205 2-25 (205)
326 2c95_A Adenylate kinase 1; tra 91.3 0.13 4.3E-06 51.9 4.0 26 180-205 9-34 (196)
327 3tlx_A Adenylate kinase 2; str 91.3 0.24 8.4E-06 51.7 6.4 27 178-204 27-53 (243)
328 2yhs_A FTSY, cell division pro 91.3 1.4 4.9E-05 50.2 13.0 42 179-223 292-333 (503)
329 2iyv_A Shikimate kinase, SK; t 91.3 0.096 3.3E-06 52.1 3.0 25 181-205 3-27 (184)
330 3umf_A Adenylate kinase; rossm 91.2 0.15 5E-06 52.0 4.2 27 179-205 28-54 (217)
331 2r6a_A DNAB helicase, replicat 91.1 0.65 2.2E-05 53.6 10.3 50 180-232 203-252 (454)
332 3ney_A 55 kDa erythrocyte memb 91.1 0.14 4.6E-06 51.2 3.8 27 179-205 18-44 (197)
333 3fwy_A Light-independent proto 91.0 0.15 5.2E-06 55.3 4.5 41 178-220 46-86 (314)
334 1e6c_A Shikimate kinase; phosp 91.0 0.11 3.9E-06 50.9 3.3 25 181-205 3-27 (173)
335 1ukz_A Uridylate kinase; trans 91.0 0.15 5.2E-06 51.6 4.3 26 179-204 14-39 (203)
336 3tr0_A Guanylate kinase, GMP k 91.0 0.14 4.6E-06 52.1 3.9 25 180-204 7-31 (205)
337 3cm0_A Adenylate kinase; ATP-b 90.9 0.14 4.9E-06 50.9 4.0 26 180-205 4-29 (186)
338 1tev_A UMP-CMP kinase; ploop, 90.9 0.14 4.9E-06 51.4 4.0 25 181-205 4-28 (196)
339 2q6t_A DNAB replication FORK h 90.9 0.69 2.4E-05 53.2 10.2 51 180-233 200-250 (444)
340 2bdt_A BH3686; alpha-beta prot 90.9 0.13 4.6E-06 51.4 3.7 22 181-202 3-24 (189)
341 2plr_A DTMP kinase, probable t 90.8 0.16 5.3E-06 51.9 4.2 26 181-206 5-30 (213)
342 2bwj_A Adenylate kinase 5; pho 90.8 0.14 4.7E-06 51.7 3.7 25 181-205 13-37 (199)
343 2bbw_A Adenylate kinase 4, AK4 90.7 0.15 5.2E-06 53.5 4.1 26 180-205 27-52 (246)
344 2j41_A Guanylate kinase; GMP, 90.7 0.15 5.1E-06 51.8 3.9 25 180-204 6-30 (207)
345 3a4m_A L-seryl-tRNA(SEC) kinas 90.6 0.15 5.3E-06 53.9 4.0 26 180-205 4-29 (260)
346 1cke_A CK, MSSA, protein (cyti 90.6 0.15 5E-06 52.8 3.8 25 181-205 6-30 (227)
347 2pt5_A Shikimate kinase, SK; a 90.6 0.16 5.3E-06 49.6 3.8 24 182-205 2-25 (168)
348 1uf9_A TT1252 protein; P-loop, 90.6 0.15 5.2E-06 51.6 3.9 26 178-203 6-31 (203)
349 2cdn_A Adenylate kinase; phosp 90.6 0.18 6.1E-06 51.0 4.3 26 180-205 20-45 (201)
350 2if2_A Dephospho-COA kinase; a 90.5 0.14 4.7E-06 52.0 3.4 22 181-202 2-23 (204)
351 1qf9_A UMP/CMP kinase, protein 90.5 0.16 5.5E-06 50.9 3.9 26 180-205 6-31 (194)
352 3a00_A Guanylate kinase, GMP k 90.4 0.13 4.3E-06 51.4 2.9 25 181-205 2-26 (186)
353 1pgv_A TMD-1, tropomodulin TMD 90.4 0.24 8.1E-06 49.2 4.8 108 563-670 37-167 (197)
354 2vli_A Antibiotic resistance p 90.4 0.11 3.8E-06 51.6 2.5 26 180-205 5-30 (183)
355 1ye8_A Protein THEP1, hypothet 90.4 0.17 5.9E-06 49.8 3.8 25 182-206 2-26 (178)
356 2grj_A Dephospho-COA kinase; T 90.3 0.17 5.7E-06 50.6 3.7 26 179-204 11-36 (192)
357 1q57_A DNA primase/helicase; d 90.3 1.2 4.1E-05 52.3 11.7 51 180-233 242-292 (503)
358 3asz_A Uridine kinase; cytidin 90.3 0.16 5.6E-06 51.7 3.8 27 179-205 5-31 (211)
359 2z0h_A DTMP kinase, thymidylat 90.2 0.48 1.6E-05 47.5 7.2 25 182-206 2-26 (197)
360 1aky_A Adenylate kinase; ATP:A 90.2 0.18 6.3E-06 51.8 4.1 26 180-205 4-29 (220)
361 1uj2_A Uridine-cytidine kinase 90.1 0.18 6.3E-06 53.1 4.1 28 178-205 20-47 (252)
362 2pbr_A DTMP kinase, thymidylat 90.1 0.18 6.1E-06 50.6 3.8 25 182-206 2-26 (195)
363 3cmw_A Protein RECA, recombina 90.1 0.66 2.3E-05 61.4 9.9 86 180-272 732-822 (1706)
364 2qt1_A Nicotinamide riboside k 90.1 0.17 6E-06 51.4 3.7 24 180-203 21-44 (207)
365 2wwf_A Thymidilate kinase, put 90.1 0.19 6.5E-06 51.3 4.0 32 180-212 10-41 (212)
366 2f1r_A Molybdopterin-guanine d 90.0 0.18 6.2E-06 49.2 3.5 27 181-207 3-29 (171)
367 1lvg_A Guanylate kinase, GMP k 90.0 0.14 4.9E-06 51.6 2.9 26 180-205 4-29 (198)
368 1nn5_A Similar to deoxythymidy 90.0 0.2 6.8E-06 51.3 4.1 27 180-206 9-35 (215)
369 3k1j_A LON protease, ATP-depen 89.9 0.17 5.9E-06 60.9 4.1 49 155-205 37-85 (604)
370 2p5t_B PEZT; postsegregational 89.9 0.28 9.4E-06 51.7 5.2 26 180-205 32-57 (253)
371 3cmu_A Protein RECA, recombina 89.9 0.7 2.4E-05 62.0 9.9 87 179-272 382-473 (2050)
372 4gp7_A Metallophosphoesterase; 89.8 0.16 5.6E-06 49.7 3.1 21 180-200 9-29 (171)
373 1rj9_A FTSY, signal recognitio 89.8 0.3 1E-05 52.7 5.5 29 179-207 101-129 (304)
374 3fb4_A Adenylate kinase; psych 89.7 0.2 6.7E-06 51.4 3.9 24 182-205 2-25 (216)
375 1g41_A Heat shock protein HSLU 89.7 0.18 6.1E-06 57.2 3.7 47 160-206 16-76 (444)
376 1jjv_A Dephospho-COA kinase; P 89.7 0.18 6.1E-06 51.2 3.5 22 181-202 3-24 (206)
377 4e22_A Cytidylate kinase; P-lo 89.7 0.21 7E-06 52.6 4.0 27 179-205 26-52 (252)
378 1zd8_A GTP:AMP phosphotransfer 89.7 0.18 6.2E-06 52.1 3.5 25 180-204 7-31 (227)
379 1g5t_A COB(I)alamin adenosyltr 89.6 0.32 1.1E-05 48.1 5.0 117 181-307 29-164 (196)
380 1htw_A HI0065; nucleotide-bind 89.6 0.22 7.5E-06 47.9 3.8 27 178-204 31-57 (158)
381 1pgv_A TMD-1, tropomodulin TMD 89.6 0.43 1.5E-05 47.4 5.9 81 564-644 67-166 (197)
382 1m7g_A Adenylylsulfate kinase; 89.5 0.37 1.3E-05 49.1 5.7 28 178-205 23-50 (211)
383 1znw_A Guanylate kinase, GMP k 89.4 0.2 6.8E-06 50.9 3.6 26 179-204 19-44 (207)
384 1zak_A Adenylate kinase; ATP:A 89.4 0.2 6.7E-06 51.7 3.5 26 180-205 5-30 (222)
385 1cr0_A DNA primase/helicase; R 89.3 0.65 2.2E-05 50.2 7.8 49 179-231 34-83 (296)
386 1gtv_A TMK, thymidylate kinase 89.3 0.13 4.5E-06 52.6 2.1 25 182-206 2-26 (214)
387 3dl0_A Adenylate kinase; phosp 89.2 0.22 7.4E-06 51.1 3.7 23 182-204 2-24 (216)
388 3mfy_A V-type ATP synthase alp 89.1 1.3 4.5E-05 50.8 10.1 98 171-272 217-336 (588)
389 1z6g_A Guanylate kinase; struc 89.1 0.18 6.2E-06 51.7 3.0 25 180-204 23-47 (218)
390 3upu_A ATP-dependent DNA helic 89.1 0.69 2.3E-05 53.6 8.2 53 163-217 29-81 (459)
391 2v54_A DTMP kinase, thymidylat 89.1 0.23 7.9E-06 50.3 3.7 25 180-204 4-28 (204)
392 2pez_A Bifunctional 3'-phospho 89.1 0.27 9.4E-06 48.5 4.2 27 180-206 5-31 (179)
393 1np6_A Molybdopterin-guanine d 89.0 0.41 1.4E-05 46.7 5.3 27 180-206 6-32 (174)
394 3nwj_A ATSK2; P loop, shikimat 89.0 0.22 7.4E-06 52.1 3.4 26 180-205 48-73 (250)
395 1zu4_A FTSY; GTPase, signal re 88.9 0.81 2.8E-05 49.8 8.1 39 179-219 104-142 (320)
396 3aez_A Pantothenate kinase; tr 88.9 0.24 8.1E-06 53.8 3.8 43 178-220 88-130 (312)
397 3cmw_A Protein RECA, recombina 88.9 0.86 2.9E-05 60.3 9.6 86 180-272 1431-1521(1706)
398 3r20_A Cytidylate kinase; stru 88.8 0.26 8.7E-06 50.7 3.8 26 180-205 9-34 (233)
399 1s96_A Guanylate kinase, GMP k 88.8 0.23 8E-06 50.8 3.5 27 179-205 15-41 (219)
400 2jeo_A Uridine-cytidine kinase 88.8 0.26 9E-06 51.6 4.0 27 178-204 23-49 (245)
401 3p32_A Probable GTPase RV1496/ 88.8 0.58 2E-05 52.0 7.0 39 168-206 65-105 (355)
402 3rfe_A Platelet glycoprotein I 88.7 0.62 2.1E-05 43.0 6.0 52 616-670 12-65 (130)
403 3lv8_A DTMP kinase, thymidylat 88.7 0.75 2.6E-05 47.4 7.2 37 180-217 27-63 (236)
404 3sr0_A Adenylate kinase; phosp 88.6 0.28 9.5E-06 49.6 3.9 24 182-205 2-25 (206)
405 3end_A Light-independent proto 88.5 0.52 1.8E-05 51.3 6.4 43 177-221 38-80 (307)
406 4tmk_A Protein (thymidylate ki 88.5 0.81 2.8E-05 46.4 7.2 52 181-233 4-55 (213)
407 3d3q_A TRNA delta(2)-isopenten 88.4 0.27 9.2E-06 53.5 3.8 25 181-205 8-32 (340)
408 3be4_A Adenylate kinase; malar 88.4 0.25 8.4E-06 50.7 3.4 25 181-205 6-30 (217)
409 3crm_A TRNA delta(2)-isopenten 88.3 0.28 9.5E-06 53.0 3.8 24 181-204 6-29 (323)
410 2ck3_A ATP synthase subunit al 88.3 0.88 3E-05 51.9 8.0 102 171-272 152-274 (510)
411 3b9q_A Chloroplast SRP recepto 88.2 0.45 1.5E-05 51.3 5.4 27 180-206 100-126 (302)
412 2xb4_A Adenylate kinase; ATP-b 88.1 0.29 1E-05 50.3 3.8 23 182-204 2-24 (223)
413 3vr4_D V-type sodium ATPase su 88.1 0.49 1.7E-05 53.2 5.7 93 180-272 151-260 (465)
414 3exa_A TRNA delta(2)-isopenten 88.1 0.3 1E-05 52.1 3.8 25 180-204 3-27 (322)
415 2i3b_A HCR-ntpase, human cance 88.1 0.27 9.2E-06 48.9 3.3 25 181-205 2-26 (189)
416 3bgw_A DNAB-like replicative h 88.1 1.3 4.3E-05 50.8 9.4 49 180-232 197-245 (444)
417 1e4v_A Adenylate kinase; trans 88.1 0.29 1E-05 50.0 3.7 23 182-204 2-24 (214)
418 1vht_A Dephospho-COA kinase; s 88.0 0.32 1.1E-05 49.9 4.0 23 180-202 4-26 (218)
419 2c61_A A-type ATP synthase non 88.0 0.38 1.3E-05 54.5 4.7 94 179-272 151-261 (469)
420 3ake_A Cytidylate kinase; CMP 88.0 0.31 1.1E-05 49.4 3.9 25 181-205 3-27 (208)
421 1ak2_A Adenylate kinase isoenz 87.9 0.35 1.2E-05 50.2 4.2 26 180-205 16-41 (233)
422 3a8t_A Adenylate isopentenyltr 87.8 0.29 9.8E-06 53.1 3.5 26 179-204 39-64 (339)
423 3ld9_A DTMP kinase, thymidylat 87.8 0.84 2.9E-05 46.5 6.9 29 178-206 19-47 (223)
424 2f6r_A COA synthase, bifunctio 87.7 0.31 1.1E-05 52.2 3.7 22 180-201 75-96 (281)
425 4eaq_A DTMP kinase, thymidylat 87.6 0.59 2E-05 48.2 5.7 28 179-206 25-52 (229)
426 3foz_A TRNA delta(2)-isopenten 87.5 0.34 1.2E-05 51.7 3.8 25 180-204 10-34 (316)
427 1sq5_A Pantothenate kinase; P- 87.5 0.63 2.1E-05 50.6 6.1 43 178-220 78-120 (308)
428 4akg_A Glutathione S-transfera 86.9 2.3 7.7E-05 59.4 12.2 146 181-337 1268-1431(2695)
429 2onk_A Molybdate/tungstate ABC 86.8 0.36 1.2E-05 50.1 3.5 26 178-204 23-48 (240)
430 3lnc_A Guanylate kinase, GMP k 86.8 0.25 8.5E-06 51.2 2.4 25 180-204 27-52 (231)
431 2og2_A Putative signal recogni 86.8 0.59 2E-05 51.5 5.4 27 180-206 157-183 (359)
432 1yrb_A ATP(GTP)binding protein 86.6 0.48 1.6E-05 50.2 4.5 26 180-205 14-39 (262)
433 3b85_A Phosphate starvation-in 86.5 0.29 1E-05 49.5 2.6 24 180-203 22-45 (208)
434 3tif_A Uncharacterized ABC tra 86.5 0.34 1.2E-05 50.2 3.2 26 179-204 30-55 (235)
435 3gqb_B V-type ATP synthase bet 86.5 1 3.6E-05 50.5 7.1 93 180-272 147-263 (464)
436 4edh_A DTMP kinase, thymidylat 86.4 1.3 4.5E-05 44.8 7.4 32 180-212 6-37 (213)
437 2r8r_A Sensor protein; KDPD, P 86.4 1 3.4E-05 45.6 6.4 37 182-220 8-44 (228)
438 3io3_A DEHA2D07832P; chaperone 86.4 0.91 3.1E-05 50.0 6.7 47 177-225 15-63 (348)
439 1u0j_A DNA replication protein 86.2 0.73 2.5E-05 48.1 5.4 38 167-204 89-128 (267)
440 3vr4_A V-type sodium ATPase ca 86.1 1.5 5E-05 50.6 8.2 97 171-271 222-340 (600)
441 1a7j_A Phosphoribulokinase; tr 86.1 0.25 8.7E-06 53.0 2.0 27 179-205 4-30 (290)
442 2eyu_A Twitching motility prot 86.0 0.76 2.6E-05 48.4 5.6 29 178-206 23-51 (261)
443 2qmh_A HPR kinase/phosphorylas 85.9 0.32 1.1E-05 48.1 2.3 25 180-204 34-58 (205)
444 3iqw_A Tail-anchored protein t 85.8 1.1 3.6E-05 49.2 6.8 48 176-225 12-59 (334)
445 2cbz_A Multidrug resistance-as 85.8 0.39 1.3E-05 49.8 3.2 27 179-205 30-56 (237)
446 1ltq_A Polynucleotide kinase; 85.8 0.43 1.5E-05 51.8 3.6 23 181-203 3-25 (301)
447 3oaa_A ATP synthase subunit al 85.8 3.5 0.00012 46.8 10.9 90 179-272 161-266 (513)
448 2pcj_A ABC transporter, lipopr 85.6 0.37 1.3E-05 49.5 2.8 25 180-204 30-54 (224)
449 1oix_A RAS-related protein RAB 85.5 0.45 1.5E-05 47.5 3.4 25 180-204 29-53 (191)
450 3eph_A TRNA isopentenyltransfe 85.5 0.49 1.7E-05 52.5 3.8 25 181-205 3-27 (409)
451 1b0u_A Histidine permease; ABC 85.4 0.41 1.4E-05 50.5 3.2 26 179-204 31-56 (262)
452 2v9p_A Replication protein E1; 85.4 0.5 1.7E-05 50.7 3.8 27 178-204 124-150 (305)
453 1g8f_A Sulfate adenylyltransfe 85.2 0.61 2.1E-05 54.0 4.7 44 163-206 376-421 (511)
454 1q3t_A Cytidylate kinase; nucl 85.1 0.59 2E-05 48.5 4.2 27 179-205 15-41 (236)
455 2dyk_A GTP-binding protein; GT 85.1 0.55 1.9E-05 45.0 3.7 23 181-203 2-24 (161)
456 2zu0_C Probable ATP-dependent 85.0 0.51 1.7E-05 49.9 3.7 25 179-203 45-69 (267)
457 2olj_A Amino acid ABC transpor 85.0 0.45 1.5E-05 50.1 3.2 26 179-204 49-74 (263)
458 2wji_A Ferrous iron transport 84.8 0.54 1.8E-05 45.5 3.5 22 181-202 4-25 (165)
459 3hjn_A DTMP kinase, thymidylat 84.8 1.7 5.8E-05 43.4 7.2 50 182-233 2-51 (197)
460 1mv5_A LMRA, multidrug resista 84.8 0.48 1.7E-05 49.4 3.3 26 179-204 27-52 (243)
461 3gfo_A Cobalt import ATP-bindi 84.7 0.42 1.4E-05 50.7 2.8 25 180-204 34-58 (275)
462 2d2e_A SUFC protein; ABC-ATPas 84.7 0.52 1.8E-05 49.3 3.5 24 180-203 29-52 (250)
463 1nlf_A Regulatory protein REPA 84.6 0.47 1.6E-05 50.8 3.2 26 180-205 30-55 (279)
464 1svm_A Large T antigen; AAA+ f 84.5 1.1 3.7E-05 49.8 6.2 27 178-204 167-193 (377)
465 2zej_A Dardarin, leucine-rich 84.5 0.42 1.4E-05 47.4 2.6 21 182-202 4-24 (184)
466 2ocp_A DGK, deoxyguanosine kin 84.5 0.6 2.1E-05 48.7 3.9 26 180-205 2-27 (241)
467 2r9v_A ATP synthase subunit al 84.4 1.3 4.6E-05 50.3 6.8 98 171-272 165-279 (515)
468 2f9l_A RAB11B, member RAS onco 84.3 0.57 1.9E-05 47.1 3.5 23 181-203 6-28 (199)
469 4gzl_A RAS-related C3 botulinu 84.3 0.58 2E-05 47.2 3.6 37 168-204 18-54 (204)
470 1vpl_A ABC transporter, ATP-bi 84.3 0.5 1.7E-05 49.5 3.2 26 179-204 40-65 (256)
471 2ghi_A Transport protein; mult 84.2 0.51 1.7E-05 49.7 3.2 25 179-203 45-69 (260)
472 1ji0_A ABC transporter; ATP bi 84.2 0.46 1.6E-05 49.4 2.8 25 180-204 32-56 (240)
473 2orw_A Thymidine kinase; TMTK, 84.2 0.75 2.6E-05 45.5 4.2 26 181-206 4-29 (184)
474 2ged_A SR-beta, signal recogni 84.2 0.98 3.4E-05 44.9 5.2 25 179-203 47-71 (193)
475 2ixe_A Antigen peptide transpo 84.1 0.51 1.7E-05 50.0 3.2 26 179-204 44-69 (271)
476 2pze_A Cystic fibrosis transme 84.1 0.5 1.7E-05 48.7 3.0 26 180-205 34-59 (229)
477 2ff7_A Alpha-hemolysin translo 84.1 0.5 1.7E-05 49.3 3.0 25 180-204 35-59 (247)
478 4g1u_C Hemin import ATP-bindin 84.1 0.49 1.7E-05 50.0 3.0 25 180-204 37-61 (266)
479 1cp2_A CP2, nitrogenase iron p 84.1 0.67 2.3E-05 49.2 4.2 38 181-220 2-39 (269)
480 1sgw_A Putative ABC transporte 84.0 0.43 1.5E-05 48.5 2.4 25 180-204 35-59 (214)
481 3zvl_A Bifunctional polynucleo 83.9 0.44 1.5E-05 54.3 2.7 27 178-204 256-282 (416)
482 1g6h_A High-affinity branched- 83.9 0.48 1.7E-05 49.8 2.8 25 180-204 33-57 (257)
483 1zj6_A ADP-ribosylation factor 83.6 1 3.4E-05 44.6 5.0 34 169-203 6-39 (187)
484 2yz2_A Putative ABC transporte 83.6 0.56 1.9E-05 49.6 3.2 25 179-203 32-56 (266)
485 3v9p_A DTMP kinase, thymidylat 83.3 1.5 5.3E-05 44.7 6.2 27 180-206 25-51 (227)
486 2ce2_X GTPase HRAS; signaling 83.2 0.62 2.1E-05 44.8 3.1 23 182-204 5-27 (166)
487 2qi9_C Vitamin B12 import ATP- 83.1 0.57 2E-05 48.9 3.0 26 180-205 26-51 (249)
488 1z2a_A RAS-related protein RAB 83.1 0.65 2.2E-05 44.8 3.3 23 181-203 6-28 (168)
489 3cwq_A Para family chromosome 83.1 1.5 5.3E-05 44.3 6.2 43 182-227 2-45 (209)
490 2v3c_C SRP54, signal recogniti 83.0 0.48 1.6E-05 53.9 2.5 37 180-218 99-135 (432)
491 2qe7_A ATP synthase subunit al 82.9 2.4 8.4E-05 48.2 8.1 98 171-272 152-266 (502)
492 2nq2_C Hypothetical ABC transp 82.8 0.6 2.1E-05 48.9 3.0 25 180-204 31-55 (253)
493 2afh_E Nitrogenase iron protei 82.7 0.81 2.8E-05 49.2 4.1 39 180-220 2-40 (289)
494 1r8s_A ADP-ribosylation factor 82.7 0.73 2.5E-05 44.3 3.5 23 182-204 2-24 (164)
495 3con_A GTPase NRAS; structural 82.6 0.68 2.3E-05 46.0 3.3 24 181-204 22-45 (190)
496 4dzz_A Plasmid partitioning pr 82.6 1.4 4.8E-05 44.3 5.7 44 181-226 2-46 (206)
497 2ihy_A ABC transporter, ATP-bi 82.6 0.58 2E-05 49.8 2.8 27 179-205 46-72 (279)
498 2wjg_A FEOB, ferrous iron tran 82.5 0.77 2.6E-05 45.5 3.6 23 181-203 8-30 (188)
499 3fdi_A Uncharacterized protein 82.5 0.76 2.6E-05 46.2 3.5 26 181-206 7-32 (201)
500 2vp4_A Deoxynucleoside kinase; 82.4 0.53 1.8E-05 48.7 2.4 25 179-203 19-43 (230)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.1e-42 Score=413.42 Aligned_cols=313 Identities=15% Similarity=0.164 Sum_probs=238.6
Q ss_pred hhHHHHHHHHHHHHhCC---CceEEEEEcCCCChHHHHHHHHHH--HHhhcccCCEEEEEEcCCCc--CHHHHHHHHHHH
Q 038494 162 DSRMKLFQDVVEALRND---KLNIIGVHGMGGVGKTTLVKQIAK--QVMEDKVFDKVVMAEVTENP--DVQKIQDKLASD 234 (1209)
Q Consensus 162 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~s~~~--~~~~l~~~i~~~ 234 (1209)
+||++++++|.++|... ..++|+|+||||+||||||+++|+ +.+.+.+|++++||++++.+ ++..+++.|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 39999999999999743 579999999999999999999998 56777889999999999985 899999999999
Q ss_pred hCCCCC-------CCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchh
Q 038494 235 LDLNFD-------LNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 235 l~~~~~-------~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 307 (1209)
++.... ...........+.+.+.+.|||||||||||+.+++ .+. .. +||+||||||++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~--------~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QE--------LRLRCLVTTRDVE 276 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HH--------TTCEEEEEESBGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----cc--------CCCEEEEEcCCHH
Confidence 986532 11122344667777776324999999999998754 111 11 6999999999999
Q ss_pred hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhHHHHHHHHHh
Q 038494 308 LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPVWKDALTQLR 387 (1209)
Q Consensus 308 v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~~~~l~ 387 (1209)
++.........|+|++|+.+|||+||.++++.....+++++++++|+++|+|+||||+++|+.++.+. |+.+ +.+.
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~ 352 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLN 352 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhH
Confidence 88642234468999999999999999999875544577888999999999999999999999998663 5443 3333
Q ss_pred cCCCccccCccccceeeeEEecccCCchhHHHHHH-----------HhcccCcCccccHHHHHHhhh--hhccccccHHH
Q 038494 388 NSNPREIHGMDANVCSSIELSYNFLESDEAKSLFL-----------LCTLFGEGTPIQVASLLRYGK--GLFKNVRTLEN 454 (1209)
Q Consensus 388 ~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~-----------~~s~fp~~~~i~~~~li~~~~--g~i~~~~~~~~ 454 (1209)
.... .. ....+..++.+||+.||++ +|.||+ |||+||+++.|+. -.++++ ||+........
T Consensus 353 ~~l~-~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i--~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 353 NKLE-SR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIPV--KLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHH-HH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEEH--HHHHHHSCC-------CCC
T ss_pred HHhh-cc--cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeeee--eeeeeeccceeccCCCCCC
Confidence 2211 00 1356889999999999998 999999 9999999999992 233456 77754221111
Q ss_pred HHHHHHHHHHHHHhcccccCCC--CCCceEehhHHHHHHHHHhhccc
Q 038494 455 ARNRVDALIDNLKASCLLLDGD--AEDEVKMHDVIHVVAVSIASEKL 499 (1209)
Q Consensus 455 ~~~~~~~~~~~L~~~~ll~~~~--~~~~~~mHdlv~~~~~~~~~~~~ 499 (1209)
.++... ++++|+++||++... ...+|+|||+||+||++++.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 222233 899999999998642 34689999999999999887763
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.1e-35 Score=396.73 Aligned_cols=314 Identities=19% Similarity=0.286 Sum_probs=249.4
Q ss_pred cccccchhhHHHHHHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhh-cc-cCCEEEEEEcCCCcC--HHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVME-DK-VFDKVVMAEVTENPD--VQKIQ 228 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~~-~f~~~~wv~~s~~~~--~~~l~ 228 (1209)
+++...|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. +|+.++|++++...+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3446679999999999999996 456789999999999999999999987643 23 457899999998543 44456
Q ss_pred HHHHHHhCCCCCC----CCChHHHHHHHHHHHhcCC--eEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEe
Q 038494 229 DKLASDLDLNFDL----NDSKPHRAKQLCQRLTKEK--RVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 229 ~~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~~k--~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
..++..++..... ..........+...+. ++ |+||||||||+..+|+.+ . +|++||||
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~--------~~~~ilvT 263 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------D--------NQCQILLT 263 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------C--------SSCEEEEE
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHh-ccCCCEEEEEecCCCHHHHHhh-------c--------CCCEEEEE
Confidence 6777777654321 2233445555555554 45 999999999998877765 2 78999999
Q ss_pred ccchhhhcccCCcceEEEcCC-CCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhHHHH
Q 038494 303 SRSKHLLTNDMNSQKIFLIEV-LSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPVWKD 381 (1209)
Q Consensus 303 tR~~~v~~~~~~~~~~~~l~~-L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~ 381 (1209)
||++.++...+.....+.+++ |+++||++||...++. ..+++++.+++|+++|+|+||||+++|++|+.+. ..|..
T Consensus 264 tR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~ 340 (1249)
T 3sfz_A 264 TRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAY 340 (1249)
T ss_dssp ESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHH
T ss_pred cCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHH
Confidence 999998854566778899996 9999999999998853 2345667899999999999999999999999775 57999
Q ss_pred HHHHHhcCCCccccC----ccccceeeeEEecccCCchhHHHHHHHhcccCcCccccHHHHHHhhhhhccccccHHHHHH
Q 038494 382 ALTQLRNSNPREIHG----MDANVCSSIELSYNFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGLFKNVRTLENARN 457 (1209)
Q Consensus 382 ~~~~l~~~~~~~~~~----~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~~ 457 (1209)
+++++.......+.. ....+..++.+||+.||++ +|+||+|||+||+++.|+++.++.+|.. . ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~------~----~~ 409 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDL------E----TE 409 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTC------C----HH
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCC------C----HH
Confidence 999998766433322 1246889999999999998 9999999999999999999999998843 1 23
Q ss_pred HHHHHHHHHHhcccccCCC--CCCceEehhHHHHHHHHHhhcc
Q 038494 458 RVDALIDNLKASCLLLDGD--AEDEVKMHDVIHVVAVSIASEK 498 (1209)
Q Consensus 458 ~~~~~~~~L~~~~ll~~~~--~~~~~~mHdlv~~~~~~~~~~~ 498 (1209)
.+.+++++|++++|++... ...+|+|||++|+|++..+.++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 4456889999999998642 2336999999999999997765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.5e-35 Score=349.92 Aligned_cols=283 Identities=17% Similarity=0.185 Sum_probs=220.0
Q ss_pred hhhHHHHHHHHHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCE-EEEEEcCCCcCHHHHHHHHHHHhCCC
Q 038494 161 FDSRMKLFQDVVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDK-VVMAEVTENPDVQKIQDKLASDLDLN 238 (1209)
Q Consensus 161 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~l~~~i~~~l~~~ 238 (1209)
.+||++++++|.++|.. +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999975 55789999999999999999999998777778985 99999999999888888887754321
Q ss_pred C---C--CC--CC----hHHHHHHHHHHHh--cCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 239 F---D--LN--DS----KPHRAKQLCQRLT--KEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 239 ~---~--~~--~~----~~~~~~~l~~~l~--~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
. . .. .. .......+.+.+. .++|+||||||||+.+.|+.+. +||+||||||+
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---------------pGSRILVTTRd 274 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---------------LSCKILLTTRF 274 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---------------SSCCEEEECSC
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---------------CCeEEEEeccC
Confidence 1 1 00 11 1223344555441 3699999999999988887651 68999999999
Q ss_pred hhhhcccCCcceEEEcC------CCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcC--Chh
Q 038494 306 KHLLTNDMNSQKIFLIE------VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNK--KLP 377 (1209)
Q Consensus 306 ~~v~~~~~~~~~~~~l~------~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~--~~~ 377 (1209)
+.++.. +.....+.++ +|+.+||++||.+..+.. ..++..+| |+|+||||+++|+.|+.+ +.+
T Consensus 275 ~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 988742 2222344555 899999999999986432 23344444 999999999999999976 567
Q ss_pred HHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhH-HHHHHHhcccCcCccccHHHHHHhhhhhccccccHHHHH
Q 038494 378 VWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEA-KSLFLLCTLFGEGTPIQVASLLRYGKGLFKNVRTLENAR 456 (1209)
Q Consensus 378 ~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~c~~~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~ 456 (1209)
.|... ....+..++.+||+.||++ . |+||++||+||+++.|+.+.++.+|..-. .
T Consensus 346 eW~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeG-----e---- 401 (1221)
T 1vt4_I 346 NWKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----K---- 401 (1221)
T ss_dssp HHHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----S----
T ss_pred HHhcC--------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----H----
Confidence 77642 1256889999999999998 7 99999999999999999999998886411 1
Q ss_pred HHHHHHHHHHHhcccccCCCCCCceEehhHHHHHH
Q 038494 457 NRVDALIDNLKASCLLLDGDAEDEVKMHDVIHVVA 491 (1209)
Q Consensus 457 ~~~~~~~~~L~~~~ll~~~~~~~~~~mHdlv~~~~ 491 (1209)
+...+++++|+++||++..+...+|+|||++++++
T Consensus 402 edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 13456899999999998765567899999999854
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=1.3e-31 Score=330.09 Aligned_cols=310 Identities=21% Similarity=0.305 Sum_probs=233.3
Q ss_pred cccchhhHHHHHHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhh-cccC-CEEEEEEcCCCcCHHHHHHHH-
Q 038494 157 DFEAFDSRMKLFQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVME-DKVF-DKVVMAEVTENPDVQKIQDKL- 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~s~~~~~~~l~~~i- 231 (1209)
....||||+.++++|.+++. .+..++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...+...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35679999999999999997 356789999999999999999999987654 5668 58999999875 333343333
Q ss_pred --HHHhCCCC----CCCCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 232 --ASDLDLNF----DLNDSKPHRAKQLCQRLTK-EKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 232 --~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
+..++... ............+...+.+ ++++||||||||+...++.+ . +|++||||||
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~--------~~~~ilvTsR 265 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------D--------SQCQILLTTR 265 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------C--------SSCEEEEEES
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------c--------CCCeEEEECC
Confidence 44554211 1223334555666666653 27899999999987665543 1 6899999999
Q ss_pred chhhhcccCCcceEEE-cCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHhcCChhHHHHHH
Q 038494 305 SKHLLTNDMNSQKIFL-IEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALKNKKLPVWKDAL 383 (1209)
Q Consensus 305 ~~~v~~~~~~~~~~~~-l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~~ 383 (1209)
...++....+....+. +++|+.+|+++||...++.. .....+.+.+|+++|+|+||||.++|++++... ..|..++
T Consensus 266 ~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l 342 (591)
T 1z6t_A 266 DKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYL 342 (591)
T ss_dssp CGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHH
T ss_pred CcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHH
Confidence 9987653222222222 36899999999999998642 233456889999999999999999999998763 4799999
Q ss_pred HHHhcCCCcccc----CccccceeeeEEecccCCchhHHHHHHHhcccCcCccccHHHHHHhhhhhccccccHHHHHHHH
Q 038494 384 TQLRNSNPREIH----GMDANVCSSIELSYNFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGLFKNVRTLENARNRV 459 (1209)
Q Consensus 384 ~~l~~~~~~~~~----~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~~~~ 459 (1209)
+.+.......+. .....+..++..||+.||++ .|.||+++|+||+++.|+.+.+..+|.. . .+..
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~------~----~~~~ 411 (591)
T 1z6t_A 343 KQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDM------E----TEEV 411 (591)
T ss_dssp HHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTC------C----HHHH
T ss_pred HHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhcc------C----HHHH
Confidence 998866532221 12346788899999999998 8999999999999999999988887743 1 1234
Q ss_pred HHHHHHHHhcccccCC--CCCCceEehhHHHHHHHHHhh
Q 038494 460 DALIDNLKASCLLLDG--DAEDEVKMHDVIHVVAVSIAS 496 (1209)
Q Consensus 460 ~~~~~~L~~~~ll~~~--~~~~~~~mHdlv~~~~~~~~~ 496 (1209)
.+++++|++++|++.. +...+|.||+++|+|++....
T Consensus 412 ~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 412 EDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 5688999999999743 234579999999999998844
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=7.1e-30 Score=321.26 Aligned_cols=580 Identities=16% Similarity=0.140 Sum_probs=301.5
Q ss_pred EEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCccc
Q 038494 524 ISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWCQL 602 (1209)
Q Consensus 524 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~l 602 (1209)
+..++..+..+|.... +++++|++++| .+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 9 ~~cs~~~L~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLTQVPDDLP-TNITVLNLTHN--QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCSSCCSCSC-TTCSEEECCSS--CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred eECCCCCccccccccC-CCCcEEECCCC--CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 3444444555554332 45666666555 24445555555566666666666655544 34455566666666666655
Q ss_pred CCc--ccccCCCCCCEEEccCCCCCccc-hhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccC
Q 038494 603 EDV--AAIGQLKKLEILSFRYSDIKQLP-LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEG 679 (1209)
Q Consensus 603 ~~l--~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 679 (1209)
+.+ ..++++++|++|++++|.+..+| ..++++++|++|++++ +.+...++..++++++|++|+++++....
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----- 159 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNNKIQA----- 159 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS-SCCSCCCCCSSSCCTTCCEEECCSSCCCC-----
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC-CcccccCchhhcccccCCEEEccCCcccc-----
Confidence 555 23556666666666665555554 3455566666666655 33444444445556666666655542110
Q ss_pred CCccchhhhCCCCCCCEEEeeccCCCCCCcc--cccCCCCeEEEEEcccCccc------cCCCCCccEEEEecCCCcchh
Q 038494 680 GSNASLAELKGLSKLTTLEIQVQDAQMLPQD--LVFVELPRYRICIGEAWGIW------RANSETSRLVQLHGLENVSTL 751 (1209)
Q Consensus 680 ~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~l~l~~l~~~~~~ 751 (1209)
.... .-....+++|+.|+++.+....++.. ....+|+.+.+......+.. ......++.+.+....... .
T Consensus 160 ~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~ 237 (680)
T 1ziw_A 160 LKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-T 237 (680)
T ss_dssp BCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-E
T ss_pred cCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-c
Confidence 0000 00112334555555555544433322 12222222221100000000 0001122222222211000 0
Q ss_pred hhHHHHHHH-hcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccc
Q 038494 752 LENYGMKML-LKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLIN 830 (1209)
Q Consensus 752 ~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 830 (1209)
.+..+... .++|+.|++.++.... .. ...++.+++|++|+++++......+ .....+++|+.|++.++..
T Consensus 238 -~~~~~~~l~~~~L~~L~Ls~n~l~~-~~--~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 238 -SNTTFLGLKWTNLTMLDLSYNNLNV-VG--NDSFAWLPQLEYFFLEYNNIQHLFS-----HSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp -CTTTTGGGGGSCCCEEECTTSCCCE-EC--TTTTTTCTTCCEEECCSCCBSEECT-----TTTTTCTTCCEEECTTCBC
T ss_pred -ChhHhhccCcCCCCEEECCCCCcCc-cC--cccccCcccccEeeCCCCccCccCh-----hhhcCCCCccEEeccchhh
Confidence 00000000 1236777766543221 11 1124667888888888765322111 1224577888888876321
Q ss_pred cchhcccccc-----cccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccc-cccccccCCCC-CCcccccc
Q 038494 831 LEAICHSQLR-----EDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNK-LEMTVGPDREK-PTTSLGFN 903 (1209)
Q Consensus 831 l~~~~~~~~~-----~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~-~~~~~~~~ 903 (1209)
-..+....++ ..+.+++|++|++++| .++.++. ..+..+++|+.|++++|.. +..+....... ....+ ..
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L-~~ 385 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL-HI 385 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC-CE
T ss_pred hcccccccccccChhhcccCCCCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcC-ce
Confidence 1111111111 1245788888888887 4444443 2456778888888887641 11111110000 00000 00
Q ss_pred ccccCCCC----CCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCc
Q 038494 904 EIIADDDT----APKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSL 979 (1209)
Q Consensus 904 ~~~~~~~~----~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L 979 (1209)
..+..... ...+..+++|+.|++++|.....++. .....+++|+.|++++|. +..+.... ...+|+|
T Consensus 386 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~~~~L 456 (680)
T 1ziw_A 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-------QEWRGLENIFEIYLSYNK-YLQLTRNS-FALVPSL 456 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS-------GGGTTCTTCCEEECCSCS-EEECCTTT-TTTCTTC
T ss_pred EECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc-------ccccCcccccEEecCCCC-cceeChhh-hhcCccc
Confidence 00111111 12345667788888887754322211 123456778888888776 33332222 2357888
Q ss_pred ceEeeccCCCccccccCccccCCCcccccccccccccccccccccchhhhhhhh--hhccccccceEEeeccCCceeecc
Q 038494 980 ERVSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKYYK--EMIGFRDIWYLQLSHFPRLKEIWH 1057 (1209)
Q Consensus 980 ~~L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~L~~~~~ 1057 (1209)
+.|++++|.- ..+. ..|.... .+++|+.|++++|...... .+.++++|+.|++++ +.++.++.
T Consensus 457 ~~L~l~~n~l-~~~~------~~p~~~~-------~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~ 521 (680)
T 1ziw_A 457 QRLMLRRVAL-KNVD------SSPSPFQ-------PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWK 521 (680)
T ss_dssp CEEECTTSCC-BCTT------CSSCTTT-------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGS
T ss_pred ccchhccccc-cccc------cCCcccc-------cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC-CCccccch
Confidence 8888877642 1100 2232222 4889999999888654332 356789999999998 45665543
Q ss_pred CC-----CCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCccccccccc
Q 038494 1058 GQ-----ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNL 1132 (1209)
Q Consensus 1058 ~~-----~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L 1132 (1209)
.. ...+..+++|+.|+++++ .+.. +|...+.++++|+.|+++++. ++.+++ ..+..+++|+.|
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~l~~---------~~~~~l~~L~~L 589 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESN-GFDE-IPVEVFKDLFELKIIDLGLNN-LNTLPA---------SVFNNQVSLKSL 589 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEE
T ss_pred hhccCCcchhhcCCCCCCEEECCCC-CCCC-CCHHHcccccCcceeECCCCC-CCcCCH---------hHhCCCCCCCEE
Confidence 32 112667899999999875 5554 677778899999999999887 776643 345578999999
Q ss_pred ccccccccccccccCCCcc-CCCCccEEeeecCC
Q 038494 1133 RLIDLPKLKRFCNFTGNII-ELPELRYLTIENCP 1165 (1209)
Q Consensus 1133 ~i~~c~~l~~l~~~~~~l~-~l~~L~~L~i~~C~ 1165 (1209)
++++ +.++.++. ..+. .+++|+.|++.++|
T Consensus 590 ~L~~-N~l~~~~~--~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 590 NLQK-NLITSVEK--KVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp ECTT-SCCCBCCH--HHHHHHHTTCSEEECTTCC
T ss_pred ECCC-CcCCccCh--hHhcccccccCEEEccCCC
Confidence 9998 57877765 3444 68999999998744
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.4e-29 Score=314.19 Aligned_cols=525 Identities=14% Similarity=0.117 Sum_probs=324.0
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCc
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWC 600 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~ 600 (1209)
+.+..++..+..+|.... +++++|++++| .+..++...|.++++|++|++++|.++.+ |..|+++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFN--PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCC--CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 356666667777776543 77888888877 45666666677888888888888888766 456788888888888888
Q ss_pred ccCCc--ccccCCCCCCEEEccCCCCCccc-hhccCCCCCCEEeccCCCCCcc--cCchhhcCCCCCcEEECCCCCCccc
Q 038494 601 QLEDV--AAIGQLKKLEILSFRYSDIKQLP-LEIGQLAQLQLLDLSNCSSLVV--IAPNVISKFSRLEELYMGDSFPQWD 675 (1209)
Q Consensus 601 ~l~~l--~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~~ 675 (1209)
.++.+ ..++++++|++|++++|.+..+| ..++++++|++|++++| .+.. +| ..++++++|++|+++++...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~-- 166 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLP-AYFSNLTNLVHVDLSYNYIQ-- 166 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCC-GGGGTCTTCCEEECCSSCCC--
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceech-HhHhhcCCCCEEEccCCcce--
Confidence 87766 56788888888888888777665 56788888888888874 4443 33 34778888888888776421
Q ss_pred cccCCCccchhhhCCCCC-CCEEEeeccCCCCCCccc-ccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhh
Q 038494 676 KVEGGSNASLAELKGLSK-LTTLEIQVQDAQMLPQDL-VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLE 753 (1209)
Q Consensus 676 ~~~~~~~~~l~~L~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~ 753 (1209)
......+..+.+++. +..|+++.+.+..++... ...+|+.|.+..... .. ..
T Consensus 167 ---~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~---------------------~~--~~ 220 (606)
T 3vq2_A 167 ---TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFN---------------------SS--NI 220 (606)
T ss_dssp ---EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS---------------------CH--HH
T ss_pred ---ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCcc---------------------ch--hH
Confidence 112223444555544 557777777665554432 222344444321110 00 01
Q ss_pred HHHHHHHhcccceeeecc--ccccccc---c-ccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEeccc
Q 038494 754 NYGMKMLLKLTEDIRLEE--LTGVQNV---V-HELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYK 827 (1209)
Q Consensus 754 ~~~~~~~~~~L~~L~l~~--~~~~~~~---~-~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 827 (1209)
.......++.++.+.+.. +.....+ . ..+..+..+ .++.+.+.....+..... ....+++|+.|++.+
T Consensus 221 ~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~-----~~~~l~~L~~L~l~~ 294 (606)
T 3vq2_A 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIV-----KFHCLANVSAMSLAG 294 (606)
T ss_dssp HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGG-----SCGGGTTCSEEEEES
T ss_pred HHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheecccccccccccc-----ccccCCCCCEEEecC
Confidence 111111222333322211 1110000 0 001111111 344555544333321111 134577888888887
Q ss_pred ccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCcccccccccc
Q 038494 828 LINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIA 907 (1209)
Q Consensus 828 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 907 (1209)
+ .++.++ ..+.+++|++|++++|.. ..+|. . .+++|+.|++++|..+...
T Consensus 295 ~-~~~~l~-----~l~~~~~L~~L~l~~n~l-~~lp~--~--~l~~L~~L~l~~n~~~~~~------------------- 344 (606)
T 3vq2_A 295 V-SIKYLE-----DVPKHFKWQSLSIIRCQL-KQFPT--L--DLPFLKSLTLTMNKGSISF------------------- 344 (606)
T ss_dssp C-CCCCCC-----CCCTTCCCSEEEEESCCC-SSCCC--C--CCSSCCEEEEESCSSCEEC-------------------
T ss_pred c-cchhhh-----hccccccCCEEEcccccC-ccccc--C--CCCccceeeccCCcCccch-------------------
Confidence 4 344443 224578888888888854 77764 2 6888888888887544332
Q ss_pred CCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccC
Q 038494 908 DDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRC 987 (1209)
Q Consensus 908 ~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C 987 (1209)
.+..+++|+.|++++|..-... ........+++|+.|++++|. +..++ .....+++|+.|++++|
T Consensus 345 ------~~~~l~~L~~L~ls~n~l~~~~------~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~L~l~~n 409 (606)
T 3vq2_A 345 ------KKVALPSLSYLDLSRNALSFSG------CCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQHLDFQHS 409 (606)
T ss_dssp ------CCCCCTTCCEEECCSSCEEEEE------ECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCEEECTTS
T ss_pred ------hhccCCCCCEEECcCCccCCCc------chhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCeeECCCC
Confidence 1245678888888887532110 001123467889999998876 44443 22346789999999887
Q ss_pred CCccccccCccccCCCcccccccccccccccccccccchhhhhh--hhhhccccccceEEeeccCCcee-eccCCCCCcc
Q 038494 988 PNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKY--YKEMIGFRDIWYLQLSHFPRLKE-IWHGQALPVS 1064 (1209)
Q Consensus 988 ~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~L~~-~~~~~~~~~~ 1064 (1209)
.-.. ..|...+. .+++|+.|++++|.... ...+..+++|++|+++++. +.. +.. ..+.
T Consensus 410 ~l~~---------~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~ 470 (606)
T 3vq2_A 410 TLKR---------VTEFSAFL------SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLS---NVFA 470 (606)
T ss_dssp EEES---------TTTTTTTT------TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEEC---SCCT
T ss_pred ccCC---------ccChhhhh------ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchH---Hhhc
Confidence 5332 11112222 57889999998887543 2345678999999998864 332 222 2367
Q ss_pred cCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCccccccccccccccccccccc
Q 038494 1065 FFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFC 1144 (1209)
Q Consensus 1065 ~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~ 1144 (1209)
.+++|++|++++| .+....| ..+.++++|+.|++++|. ++.+.+ ..+..+++|+.|+++++ +++.+|
T Consensus 471 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~~l~~L~~L~l~~N-~l~~~p 537 (606)
T 3vq2_A 471 NTTNLTFLDLSKC-QLEQISW-GVFDTLHRLQLLNMSHNN-LLFLDS---------SHYNQLYSLSTLDCSFN-RIETSK 537 (606)
T ss_dssp TCTTCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCEEG---------GGTTTCTTCCEEECTTS-CCCCEE
T ss_pred cCCCCCEEECCCC-cCCccCh-hhhcccccCCEEECCCCc-CCCcCH---------HHccCCCcCCEEECCCC-cCcccC
Confidence 7899999999887 4554434 446889999999999997 655522 23457889999999984 688877
Q ss_pred ccCCCccCCC-CccEEeeecCC
Q 038494 1145 NFTGNIIELP-ELRYLTIENCP 1165 (1209)
Q Consensus 1145 ~~~~~l~~l~-~L~~L~i~~C~ 1165 (1209)
. .+..++ +|+.|++.++|
T Consensus 538 ~---~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 538 G---ILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp S---CGGGSCTTCCEEECCSCC
T ss_pred H---hHhhhcccCcEEEccCCC
Confidence 6 477787 59999998854
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=7.8e-30 Score=323.21 Aligned_cols=541 Identities=16% Similarity=0.052 Sum_probs=261.8
Q ss_pred CCCCccEEEeccCCCcccccCh-hhhcCCCCCcEEEecCcccc-cccccc-cCCCCCcEEeccCcccCCc--cc---ccC
Q 038494 539 ECPQLKLLLLLANGDSYLEISH-LFFEGTEDLKVLSLSGIHFS-SLSSSL-GHLINLQTLCLDWCQLEDV--AA---IGQ 610 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~i~-~lp~~i-~~l~~L~~L~l~~~~l~~l--~~---i~~ 610 (1209)
.+++|++|++++|. ....++. ..++++++|++|++++|.+. .+|..+ .++++|++|++++|.+... .. +.+
T Consensus 98 ~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 98 CSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp CCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred cCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 45555555555543 1111222 13455555555555555554 233332 4555555555555555443 12 455
Q ss_pred CCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCC
Q 038494 611 LKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKG 690 (1209)
Q Consensus 611 L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~ 690 (1209)
+++|++|++++|.+....+ +.++++|++|++++| .+....+. ++++++|++|++++|... ......+..
T Consensus 177 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~~~~~-l~~l~~L~~L~Ls~n~l~--------~~~~~~l~~ 245 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSN-NFSTGIPF-LGDCSALQHLDISGNKLS--------GDFSRAIST 245 (768)
T ss_dssp CTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSS-CCCSCCCB-CTTCCSCCEEECCSSCCC--------SCHHHHTTT
T ss_pred CCCCCEEECCCCcccccCC-cccCCcCCEEECcCC-cCCCCCcc-cccCCCCCEEECcCCcCC--------CcccHHHhc
Confidence 5555555555554443221 245555666666553 33333333 555666666665554311 112334555
Q ss_pred CCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcc---cCccccCC-CCCccEEEEecCCCcchhhhHHHHHHHhcccce
Q 038494 691 LSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGE---AWGIWRAN-SETSRLVQLHGLENVSTLLENYGMKMLLKLTED 766 (1209)
Q Consensus 691 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~ 766 (1209)
+++|+.|+++.+..........+.+|+.|.+..+. ..+.+... ...++.+.+......... + .....+++|+.
T Consensus 246 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~--p-~~~~~l~~L~~ 322 (768)
T 3rgz_A 246 CTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV--P-PFFGSCSLLES 322 (768)
T ss_dssp CSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC--C-GGGGGCTTCCE
T ss_pred CCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc--c-hHHhcCCCccE
Confidence 66666666665554322222244555555543222 11212111 133444444332211100 0 00112345555
Q ss_pred eeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCC-cccEEecccccccchhccccccccccc
Q 038494 767 IRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFP-LLESLSLYKLINLEAICHSQLREDQFF 845 (1209)
Q Consensus 767 L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~l 845 (1209)
|++.++.....++.. .++.+++|++|+++++.....++.. ...++ +|+.|+++++ .+.......+.. ..+
T Consensus 323 L~L~~n~l~~~ip~~--~l~~l~~L~~L~Ls~n~l~~~~p~~-----l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~-~~~ 393 (768)
T 3rgz_A 323 LALSSNNFSGELPMD--TLLKMRGLKVLDLSFNEFSGELPES-----LTNLSASLLTLDLSSN-NFSGPILPNLCQ-NPK 393 (768)
T ss_dssp EECCSSEEEEECCHH--HHTTCTTCCEEECCSSEEEECCCTT-----HHHHTTTCSEEECCSS-EEEEECCTTTTC-STT
T ss_pred EECCCCcccCcCCHH--HHhcCCCCCEEeCcCCccCccccHH-----HHhhhcCCcEEEccCC-CcCCCcChhhhh-ccc
Confidence 555543322122211 0345666666666665422111111 11233 6666666663 222111110100 125
Q ss_pred CCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEe
Q 038494 846 SNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLK 925 (1209)
Q Consensus 846 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~ 925 (1209)
++|++|++++|.-...+|. .+.++++|+.|++++|.-.... +..+..+++|+.|+
T Consensus 394 ~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~~-----------------------p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPP--TLSNCSELVSLHLSFNYLSGTI-----------------------PSSLGSLSKLRDLK 448 (768)
T ss_dssp CCCCEEECCSSEEEEECCG--GGGGCTTCCEEECCSSEEESCC-----------------------CGGGGGCTTCCEEE
T ss_pred CCccEEECCCCccccccCH--HHhcCCCCCEEECcCCcccCcc-----------------------cHHHhcCCCCCEEE
Confidence 5677777766633223332 4456667777777665321111 11234445566666
Q ss_pred eccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccCccccCCCcc
Q 038494 926 VSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCK 1005 (1209)
Q Consensus 926 l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~ 1005 (1209)
+++|.....++. ....+++|+.|++++|.-...++.. ...+++|+.|++++|.-.. .+|..
T Consensus 449 L~~n~l~~~~p~--------~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~---------~~p~~ 509 (768)
T 3rgz_A 449 LWLNMLEGEIPQ--------ELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTG---------EIPKW 509 (768)
T ss_dssp CCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCS---------CCCGG
T ss_pred CCCCcccCcCCH--------HHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCCccCC---------cCChH
Confidence 665543222211 2234555666666555433222111 1235566666666654222 12222
Q ss_pred cccccccccccccccccccchhhhh--hhhhhccccccceEEeeccCCceeeccC-------------------------
Q 038494 1006 VQVTEKEEGELHHWEGNNLNSIMQK--YYKEMIGFRDIWYLQLSHFPRLKEIWHG------------------------- 1058 (1209)
Q Consensus 1006 ~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~L~~~~~~------------------------- 1058 (1209)
.. .+++|+.|++++|... .+..+..+++|+.|++++++-...++..
T Consensus 510 ~~-------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 510 IG-------RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp GG-------GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred Hh-------cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 11 2555566666555432 2233445555666655553211111100
Q ss_pred -----------------------------------------CCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcE
Q 038494 1059 -----------------------------------------QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRR 1097 (1209)
Q Consensus 1059 -----------------------------------------~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~ 1097 (1209)
.+..+..+++|+.|+++++ ++...+|.. +.++++|+.
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~-l~~l~~L~~ 660 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKE-IGSMPYLFI 660 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGG-GGGCTTCCE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHH-HhccccCCE
Confidence 0122455788999999875 555556765 688999999
Q ss_pred EEEccCCchh-hhhhcccccccccCCCcccccccccccccccccc-cccccCCCccCCCCccEEeeecCCCccccc
Q 038494 1098 LEVRNCDSLE-EVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLK-RFCNFTGNIIELPELRYLTIENCPDMETFI 1171 (1209)
Q Consensus 1098 L~i~~c~~l~-~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~-~l~~~~~~l~~l~~L~~L~i~~C~~l~~l~ 1171 (1209)
|++++|. ++ .+|. .+..+++|+.|+++++ ++. .+| ..+..+++|+.|++++|+--..+|
T Consensus 661 L~Ls~N~-l~g~ip~----------~l~~L~~L~~LdLs~N-~l~g~ip---~~l~~l~~L~~L~ls~N~l~g~iP 721 (768)
T 3rgz_A 661 LNLGHND-ISGSIPD----------EVGDLRGLNILDLSSN-KLDGRIP---QAMSALTMLTEIDLSNNNLSGPIP 721 (768)
T ss_dssp EECCSSC-CCSCCCG----------GGGGCTTCCEEECCSS-CCEECCC---GGGGGCCCCSEEECCSSEEEEECC
T ss_pred EeCcCCc-cCCCCCh----------HHhCCCCCCEEECCCC-cccCcCC---hHHhCCCCCCEEECcCCcccccCC
Confidence 9999998 54 4432 3347889999999984 554 544 478899999999999875433444
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2e-29 Score=319.40 Aligned_cols=597 Identities=14% Similarity=0.033 Sum_probs=304.7
Q ss_pred cCCeEEEEccCCCCcc-CCC---cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-ccc---ccCC
Q 038494 518 QKGAIAISIPYGDIQE-LPE---RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSS---LGHL 589 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~-~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~---i~~l 589 (1209)
..+++++.++++.+.. +|. ...+++|++|++++|. ....++..++.++++|++|++++|.++.. |.. +.++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSE-EECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCc-cCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence 4567777777776652 333 2367788888887764 22334444446777888888888777644 333 6777
Q ss_pred CCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 590 INLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 590 ~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
++|++|++++|.+.....+.++++|++|++++|.+...++.++++++|++|++++| .+....+..++++++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCC
Confidence 77788887777776664457777777777777777654444777777777777773 44443344577777777777776
Q ss_pred CCCccccccCCCccchhhhCCCCCCCEEEeeccCCC-CCCccc-c-cCCCCeEEEEEcc---cCccccCCCCCccEEEEe
Q 038494 670 SFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQ-MLPQDL-V-FVELPRYRICIGE---AWGIWRANSETSRLVQLH 743 (1209)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~-~~~~~~-~-~~~L~~L~l~~~~---~~~~~~~~~~~~~~l~l~ 743 (1209)
|.... . +... .+++|+.|+++.+... .+|... . ..+|+.|.+..+. ..+.+......++.+.+.
T Consensus 257 n~l~~-----~----~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 257 NQFVG-----P----IPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp SCCEE-----S----CCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CcccC-----c----cCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 64210 0 0011 4556666666655543 333332 1 2555555554222 222233333444444444
Q ss_pred cCCCcchhhhHHHHHHHhcccceeeeccccccccccccccCCCCcc-CCcEEEEecccCceeeeccCCccccccCCcccE
Q 038494 744 GLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFP-RLKHLWVERCSEILHIVGSVGRVHRKVFPLLES 822 (1209)
Q Consensus 744 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~ 822 (1209)
...... ..+......+++|+.|.+.++......+.. +..++ +|++|+++++.....++. ......+++|+.
T Consensus 327 ~n~l~~--~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~~ 398 (768)
T 3rgz_A 327 SNNFSG--ELPMDTLLKMRGLKVLDLSFNEFSGELPES---LTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQE 398 (768)
T ss_dssp SSEEEE--ECCHHHHTTCTTCCEEECCSSEEEECCCTT---HHHHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCCE
T ss_pred CCcccC--cCCHHHHhcCCCCCEEeCcCCccCccccHH---HHhhhcCCcEEEccCCCcCCCcCh---hhhhcccCCccE
Confidence 322110 111111222345555555443221111111 12233 555555555432211110 001112344555
Q ss_pred EecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCC-cccc
Q 038494 823 LSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPT-TSLG 901 (1209)
Q Consensus 823 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~-~~~~ 901 (1209)
|++.++. ++...... .+.+++|+.|++++|.-...+|. .+..+++|+.|++++|.-...++......+. ..+.
T Consensus 399 L~L~~n~-l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 399 LYLQNNG-FTGKIPPT---LSNCSELVSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp EECCSSE-EEEECCGG---GGGCTTCCEEECCSSEEESCCCG--GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred EECCCCc-cccccCHH---HhcCCCCCEEECcCCcccCcccH--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 5555432 22110000 12344555555555421112221 2344455555555444221111100000000 0000
Q ss_pred ccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcce
Q 038494 902 FNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLER 981 (1209)
Q Consensus 902 ~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~ 981 (1209)
....-.....+..+..+++|+.|++++|.....++. ....+++|+.|+|++|.-...++.. ...+++|+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~--------~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~ 542 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK--------WIGRLENLAILKLSNNSFSGNIPAE--LGDCRSLIW 542 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG--------GGGGCTTCCEEECCSSCCEEECCGG--GGGCTTCCE
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh--------HHhcCCCCCEEECCCCcccCcCCHH--HcCCCCCCE
Confidence 000000011223356677888888888764433332 3345788888888887654444322 235788888
Q ss_pred EeeccCCCccccccCccccC------CCccc-----------------------c-cccccccccccccccccchhh--h
Q 038494 982 VSMIRCPNMKTFSQGILSIP------KPCKV-----------------------Q-VTEKEEGELHHWEGNNLNSIM--Q 1029 (1209)
Q Consensus 982 L~i~~C~~L~~l~~~~~~~~------~p~~~-----------------------~-~~~~~~~~l~~L~~L~l~~~~--~ 1029 (1209)
|++++|+-...+|....... +.... . ........++.++.+++..+. .
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 88888764443333211100 00000 0 000000111222222222111 1
Q ss_pred hhhhhhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchh-h
Q 038494 1030 KYYKEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLE-E 1108 (1209)
Q Consensus 1030 ~~~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~-~ 1108 (1209)
.....+..+++|+.|+++++ +++...+ ..++.+++|+.|+++++ .+...+|.. +.++++|+.|++++|. ++ .
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N-~l~g~ip---~~l~~l~~L~~L~Ls~N-~l~g~ip~~-l~~L~~L~~LdLs~N~-l~g~ 695 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYN-MLSGYIP---KEIGSMPYLFILNLGHN-DISGSIPDE-VGDLRGLNILDLSSNK-LDGR 695 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSS-CCBSCCC---GGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCEEECCSSC-CEEC
T ss_pred cCchhhhccccccEEECcCC-cccccCC---HHHhccccCCEEeCcCC-ccCCCCChH-HhCCCCCCEEECCCCc-ccCc
Confidence 11223445788999999985 4543222 33788999999999885 555556766 6889999999999998 54 3
Q ss_pred hhhcccccccccCCCcccccccccccccccccccccccCCCccCCCCccEEeeecCCCccccc
Q 038494 1109 VLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIELPELRYLTIENCPDMETFI 1171 (1209)
Q Consensus 1109 l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l~~L~~L~i~~C~~l~~l~ 1171 (1209)
+|. .+..+++|+.|++++++--..+|. .+.+.++....+.++|.+=..|
T Consensus 696 ip~----------~l~~l~~L~~L~ls~N~l~g~iP~----~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 696 IPQ----------AMSALTMLTEIDLSNNNLSGPIPE----MGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCG----------GGGGCCCCSEEECCSSEEEEECCS----SSSGGGSCGGGGCSCTEEESTT
T ss_pred CCh----------HHhCCCCCCEEECcCCcccccCCC----chhhccCCHHHhcCCchhcCCC
Confidence 332 334789999999999655556664 2344455555677777765444
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=6.5e-29 Score=308.13 Aligned_cols=530 Identities=16% Similarity=0.109 Sum_probs=297.0
Q ss_pred EEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCcc
Q 038494 523 AISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWCQ 601 (1209)
Q Consensus 523 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~ 601 (1209)
.+...+..+..+|... .+++++|++++| .+..+++..|.++++|++|++++|.+..+ |..|+++++|++|++++|.
T Consensus 16 ~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTL-PNSTECLEFSFN--VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSSCCTTS-CTTCCEEECTTC--CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcccCcCCC-CCcCcEEEccCC--ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4455555566666543 246777777776 35556565667777777777777777654 5567777777777777777
Q ss_pred cCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccccc
Q 038494 602 LEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVE 678 (1209)
Q Consensus 602 l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 678 (1209)
+..+ ..++++++|++|++++|.++.+ |..++++++|++|++++ +.+..++...+..+++|++|+++++...
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~----- 166 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIH----- 166 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS-SCCCCCCCCTTCCCTTCCEEECCSSCCC-----
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC-CcccccCcccccCCcccCEEEcccCccc-----
Confidence 7665 4677777777777777777766 45577777777777777 4455543222445777777777665321
Q ss_pred CCCccchhhhCCCCCCC--EEEeeccCCCCCCcc-cccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHH
Q 038494 679 GGSNASLAELKGLSKLT--TLEIQVQDAQMLPQD-LVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENY 755 (1209)
Q Consensus 679 ~~~~~~l~~L~~l~~L~--~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 755 (1209)
......+..+++|+ .|+++.+....++.. .....|+.+.+ .+.. ...
T Consensus 167 ---~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l---------------------~~~~-----~~~- 216 (606)
T 3t6q_A 167 ---YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF---------------------GGTQ-----NLL- 216 (606)
T ss_dssp ---EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEEC---------------------TTCS-----CHH-
T ss_pred ---ccChhhhhhhcccceeEEecCCCccCccChhHhhhcccccccc---------------------CCch-----hHH-
Confidence 11123455566666 566666655443322 11122222221 1110 000
Q ss_pred HHHHHhcc--cceeeeccccccccccccccCCCCcc--CCcEEEEecccCceeeeccCCccccccCCcccEEeccccccc
Q 038494 756 GMKMLLKL--TEDIRLEELTGVQNVVHELDDGEGFP--RLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINL 831 (1209)
Q Consensus 756 ~~~~~~~~--L~~L~l~~~~~~~~~~~~l~~~~~l~--~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 831 (1209)
.....+.+ +..+.+..+.........-..+.++. +|+.|+++++.. ..++. .....+++|+.|+++++ .+
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~~~----~~~~~l~~L~~L~l~~n-~l 290 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISS----NTFHCFSGLQELDLTAT-HL 290 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSCCT----TTTTTCTTCSEEECTTS-CC
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc-CccCH----HHhccccCCCEEeccCC-cc
Confidence 00111111 11122211111110000000011121 577777776642 21111 11344677888888774 45
Q ss_pred chhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCC
Q 038494 832 EAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDT 911 (1209)
Q Consensus 832 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1209)
+.++.. .+.+++|++|++++| .++.+++ ..+..+++|+.|++++|.....++.
T Consensus 291 ~~lp~~----l~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~--------------------- 343 (606)
T 3t6q_A 291 SELPSG----LVGLSTLKKLVLSAN-KFENLCQ-ISASNFPSLTHLSIKGNTKRLELGT--------------------- 343 (606)
T ss_dssp SCCCSS----CCSCTTCCEEECTTC-CCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCS---------------------
T ss_pred CCCChh----hcccccCCEEECccC-CcCcCch-hhhhccCcCCEEECCCCCcccccch---------------------
Confidence 543321 245777888888776 3444433 2456677888888877643212111
Q ss_pred CCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCcc
Q 038494 912 APKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMK 991 (1209)
Q Consensus 912 ~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~ 991 (1209)
..+..+++|+.|++++|...... ........+++|+.|+++++. +..+.+.. ...+++|+.|++++|.--.
T Consensus 344 -~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 344 -GCLENLENLRELDLSHDDIETSD------CCNLQLRNLSHLQSLNLSYNE-PLSLKTEA-FKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp -STTTTCTTCCEEECCSSCCCEEE------ESTTTTTTCTTCCEEECCSCS-CEEECTTT-TTTCTTCSEEECTTCCEEC
T ss_pred -hhhhccCcCCEEECCCCcccccc------CcchhcccCCCCCEEECCCCc-CCcCCHHH-hcCCccCCeEECCCCcCCC
Confidence 11345677788888776532211 001123457788888887765 23332222 2356788888888875322
Q ss_pred ccccCccccCCCcccccccccccccccccccccchhhhhh--hhhhccccccceEEeeccCCceeeccCCCCCcccCCCc
Q 038494 992 TFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKY--YKEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNL 1069 (1209)
Q Consensus 992 ~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L 1069 (1209)
..|..... .+++|+.|++++|.... ...+..+++|++|++++++ +..........+..+++|
T Consensus 415 ---------~~~~~~~~------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L 478 (606)
T 3t6q_A 415 ---------KDAQSPFQ------NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRL 478 (606)
T ss_dssp ---------CTTCCTTT------TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTC
T ss_pred ---------cccchhhh------CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCc
Confidence 11111111 47788888888876532 2234567888888888854 322111111236677889
Q ss_pred cEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccccCCC
Q 038494 1070 ARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGN 1149 (1209)
Q Consensus 1070 ~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 1149 (1209)
+.|++++| .+....| ..+.++++|+.|++++|. ++.+++ ..+..+++| .|++++ +.++.++. ..
T Consensus 479 ~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~l~~l~~L-~L~L~~-N~l~~~~~--~~ 542 (606)
T 3t6q_A 479 EILVLSFC-DLSSIDQ-HAFTSLKMMNHVDLSHNR-LTSSSI---------EALSHLKGI-YLNLAS-NHISIILP--SL 542 (606)
T ss_dssp CEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCGGGG---------GGGTTCCSC-EEECCS-SCCCCCCG--GG
T ss_pred cEEECCCC-ccCccCh-hhhccccCCCEEECCCCc-cCcCCh---------hHhCccccc-EEECcC-CcccccCH--hh
Confidence 99999886 4444334 346788899999999887 555432 233467778 888887 45666544 55
Q ss_pred ccCCCCccEEeeecCC
Q 038494 1150 IIELPELRYLTIENCP 1165 (1209)
Q Consensus 1150 l~~l~~L~~L~i~~C~ 1165 (1209)
+..+++|+.|++.+||
T Consensus 543 ~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 543 LPILSQQRTINLRQNP 558 (606)
T ss_dssp HHHHHTSSEEECTTCC
T ss_pred cccCCCCCEEeCCCCC
Confidence 6778888999988865
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.6e-28 Score=304.54 Aligned_cols=511 Identities=17% Similarity=0.086 Sum_probs=344.1
Q ss_pred hhcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCC
Q 038494 516 IIQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINL 592 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L 592 (1209)
.++.+++++.++++.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|.++.+ |..|+++++|
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC--EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC--cccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 456899999999999988876 348999999999998 56777777789999999999999999987 7899999999
Q ss_pred cEEeccCcccCCc--ccccCCCCCCEEEccCCCCC--ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCc----E
Q 038494 593 QTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIK--QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLE----E 664 (1209)
Q Consensus 593 ~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~----~ 664 (1209)
++|++++|.+..+ ..++++++|++|++++|.+. .+|..++++++|++|++++ +.++.+++..++.+.+|+ +
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHHHHHCTTCCCE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhhhhccccccce
Confidence 9999999999877 57999999999999999988 5799999999999999999 577777766677666665 7
Q ss_pred EECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCC--CCcc-cccCCCCeEEEEEcccCccccCCCCCccEEE
Q 038494 665 LYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQM--LPQD-LVFVELPRYRICIGEAWGIWRANSETSRLVQ 741 (1209)
Q Consensus 665 L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 741 (1209)
|+++++... ......-...+|+.|+++++.... .+.. .....++.+.+..+...... .
T Consensus 186 L~l~~n~l~---------~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-----~----- 246 (606)
T 3vq2_A 186 LDMSLNPID---------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER-----N----- 246 (606)
T ss_dssp EECTTCCCC---------EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC-----C-----
T ss_pred eeccCCCcc---------eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC-----c-----
Confidence 998876432 111122223378999998876531 1111 14445555555433211100 0
Q ss_pred EecCCCcchhhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCccc
Q 038494 742 LHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLE 821 (1209)
Q Consensus 742 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 821 (1209)
+.... .....++.. -.++.+.+........ ..+.+..+++|+.|++.++.. ..++ ....+++|+
T Consensus 247 l~~~~----~~~~~~l~~--l~l~~l~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~-~~l~------~l~~~~~L~ 310 (606)
T 3vq2_A 247 LEIFE----PSIMEGLCD--VTIDEFRLTYTNDFSD---DIVKFHCLANVSAMSLAGVSI-KYLE------DVPKHFKWQ 310 (606)
T ss_dssp CSCCC----GGGGTTGGG--SEEEEEEECCCTTCCG---GGGSCGGGTTCSEEEEESCCC-CCCC------CCCTTCCCS
T ss_pred ccccC----hHHhhhhhh--ccHhheeccccccccc---cccccccCCCCCEEEecCccc-hhhh------hccccccCC
Confidence 00000 000000000 0233333322222222 222256788888888888763 2221 234577888
Q ss_pred EEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCcccc
Q 038494 822 SLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLG 901 (1209)
Q Consensus 822 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 901 (1209)
.|++.+|.- ..++ .. .+++|++|++++|..+...+ +..+++|+.|++++|. +.....
T Consensus 311 ~L~l~~n~l-~~lp-----~~-~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~-l~~~~~----------- 367 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-----TL-DLPFLKSLTLTMNKGSISFK----KVALPSLSYLDLSRNA-LSFSGC----------- 367 (606)
T ss_dssp EEEEESCCC-SSCC-----CC-CCSSCCEEEEESCSSCEECC----CCCCTTCCEEECCSSC-EEEEEE-----------
T ss_pred EEEcccccC-cccc-----cC-CCCccceeeccCCcCccchh----hccCCCCCEEECcCCc-cCCCcc-----------
Confidence 888888643 4433 22 58889999998886665542 2467888888888763 222110
Q ss_pred ccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcce
Q 038494 902 FNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLER 981 (1209)
Q Consensus 902 ~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~ 981 (1209)
....+..+++|+.|++++|.. ..++ .....+++|+.|+++++.-.... .......+++|+.
T Consensus 368 ---------~~~~~~~~~~L~~L~L~~n~l-~~~~--------~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 368 ---------CSYSDLGTNSLRHLDLSFNGA-IIMS--------ANFMGLEELQHLDFQHSTLKRVT-EFSAFLSLEKLLY 428 (606)
T ss_dssp ---------CCHHHHCCSCCCEEECCSCSE-EEEC--------CCCTTCTTCCEEECTTSEEESTT-TTTTTTTCTTCCE
T ss_pred ---------hhhhhccCCcccEeECCCCcc-ccch--------hhccCCCCCCeeECCCCccCCcc-ChhhhhccccCCE
Confidence 001224567888888888762 2222 13456788999999887643332 2222346889999
Q ss_pred EeeccCCCccccccCccccCCCcccccccccccccccccccccchhhhhh---hhhhccccccceEEeeccCCceeeccC
Q 038494 982 VSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKY---YKEMIGFRDIWYLQLSHFPRLKEIWHG 1058 (1209)
Q Consensus 982 L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~~L~~~~~~ 1058 (1209)
|++++|.-.. ..|.... .+++|++|++++|.... ...+..+++|+.|++++| .++.+...
T Consensus 429 L~l~~n~l~~---------~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 491 (606)
T 3vq2_A 429 LDISYTNTKI---------DFDGIFL-------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG 491 (606)
T ss_dssp EECTTSCCEE---------CCTTTTT-------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred EECcCCCCCc---------cchhhhc-------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChh
Confidence 9999986433 1222221 47899999999886543 234567899999999996 56555433
Q ss_pred CCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCcccc-cccccccccc
Q 038494 1059 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFP-KLSNLRLIDL 1137 (1209)
Q Consensus 1059 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~-~L~~L~i~~c 1137 (1209)
.+..+++|++|++++| .+....|. .+.++++|+.|++++|. ++.+|.. +..++ +|+.|++.++
T Consensus 492 ---~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~----------~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 492 ---VFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGI----------LQHFPKSLAFFNLTNN 555 (606)
T ss_dssp ---TTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESC----------GGGSCTTCCEEECCSC
T ss_pred ---hhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCHh----------HhhhcccCcEEEccCC
Confidence 3677899999999987 55554454 46889999999999998 8777542 23555 6999999985
Q ss_pred cc
Q 038494 1138 PK 1139 (1209)
Q Consensus 1138 ~~ 1139 (1209)
|-
T Consensus 556 ~~ 557 (606)
T 3vq2_A 556 SV 557 (606)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=4.6e-28 Score=300.46 Aligned_cols=514 Identities=14% Similarity=0.115 Sum_probs=349.8
Q ss_pred hhcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCC
Q 038494 516 IIQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINL 592 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L 592 (1209)
.++..++++.++++.+..++.. ..+++|++|++++| .+..+.+..|.++++|++|++++|.+..+ |..++++++|
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC--QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCC--ccceeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 4567899999999999988542 48999999999998 46667777789999999999999999865 6789999999
Q ss_pred cEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccc-hhccCCCCCCEEeccCCCCCcccCchhhcCCCCCc--EEEC
Q 038494 593 QTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLP-LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLE--ELYM 667 (1209)
Q Consensus 593 ~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~--~L~l 667 (1209)
++|++++|.++.+ ..++++++|++|++++|.+..++ +.+..+++|++|++++ +.+..+++..++.+++|+ +|++
T Consensus 108 ~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEEC
T ss_pred cEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEec
Confidence 9999999999987 77999999999999999998763 3455599999999999 678888777799999999 8888
Q ss_pred CCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCccc-ccCCCCeEEEEEcccCccccCCCCCccEEEEecCC
Q 038494 668 GDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDL-VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLE 746 (1209)
Q Consensus 668 ~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~ 746 (1209)
+++.... .....-...+|+.|+++++.. .+... ...++.-..+..+. +.
T Consensus 187 ~~n~l~~---------~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~-------------------~~ 236 (606)
T 3t6q_A 187 NGNDIAG---------IEPGAFDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGT-------------------FE 236 (606)
T ss_dssp TTCCCCE---------ECTTTTTTCEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCC-------------------CT
T ss_pred CCCccCc---------cChhHhhhccccccccCCchh--HHHHhhhccccchhheechh-------------------hc
Confidence 8764321 111222335788888876541 11111 12222211221111 00
Q ss_pred CcchhhhHHHHHHHh--cccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEe
Q 038494 747 NVSTLLENYGMKMLL--KLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLS 824 (1209)
Q Consensus 747 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 824 (1209)
..............+ ..++.+.+.+... ..+... .++.+++|++|+++++. +..++. ....+++|+.|+
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l-~~~~~~--~~~~l~~L~~L~l~~n~-l~~lp~-----~l~~l~~L~~L~ 307 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYF-FNISSN--TFHCFSGLQELDLTATH-LSELPS-----GLVGLSTLKKLV 307 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCC-SSCCTT--TTTTCTTCSEEECTTSC-CSCCCS-----SCCSCTTCCEEE
T ss_pred cccccccChhHhchhhcCceeEEEeecCcc-CccCHH--HhccccCCCEEeccCCc-cCCCCh-----hhcccccCCEEE
Confidence 000000000000001 1466666655422 222211 15778999999999985 333332 234589999999
Q ss_pred cccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccc
Q 038494 825 LYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNE 904 (1209)
Q Consensus 825 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 904 (1209)
++++ .++.+....+ ..+++|+.|++++|.....++. ..+..+++|+.|++++|.- .....
T Consensus 308 l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~-------------- 367 (606)
T 3t6q_A 308 LSAN-KFENLCQISA---SNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDI-ETSDC-------------- 367 (606)
T ss_dssp CTTC-CCSBGGGGCG---GGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCC-CEEEE--------------
T ss_pred CccC-CcCcCchhhh---hccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCcc-ccccC--------------
Confidence 9985 4555433222 4589999999999865545554 3467899999999998743 22210
Q ss_pred cccCCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEee
Q 038494 905 IIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSM 984 (1209)
Q Consensus 905 ~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i 984 (1209)
....+..+++|+.|++++|......+ .....+++|+.|+++++.-.... .......+++|+.|++
T Consensus 368 ------~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 368 ------CNLQLRNLSHLQSLNLSYNEPLSLKT--------EAFKECPQLELLDLAFTRLKVKD-AQSPFQNLHLLKVLNL 432 (606)
T ss_dssp ------STTTTTTCTTCCEEECCSCSCEEECT--------TTTTTCTTCSEEECTTCCEECCT-TCCTTTTCTTCCEEEC
T ss_pred ------cchhcccCCCCCEEECCCCcCCcCCH--------HHhcCCccCCeEECCCCcCCCcc-cchhhhCcccCCEEEC
Confidence 01224667899999999986432221 13346789999999988643332 2222346899999999
Q ss_pred ccCCCccccccCccccCCCcccccccccccccccccccccchhhhhhh-----hhhccccccceEEeeccCCceeeccCC
Q 038494 985 IRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKYY-----KEMIGFRDIWYLQLSHFPRLKEIWHGQ 1059 (1209)
Q Consensus 985 ~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~L~~~~~~~ 1059 (1209)
++|. +.. .+..... .+++|++|++++|..... ..+..+++|+.|++++| .++.+...
T Consensus 433 ~~n~-l~~---------~~~~~~~------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~- 494 (606)
T 3t6q_A 433 SHSL-LDI---------SSEQLFD------GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH- 494 (606)
T ss_dssp TTCC-CBT---------TCTTTTT------TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT-
T ss_pred CCCc-cCC---------cCHHHHh------CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChh-
Confidence 9985 331 2222222 488999999999875321 33567899999999995 56655433
Q ss_pred CCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccc
Q 038494 1060 ALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPK 1139 (1209)
Q Consensus 1060 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~ 1139 (1209)
.+..+++|+.|+++++ .+....| ..+.++++| .|++++|. ++.+++ ..+..+++|+.|+++++|-
T Consensus 495 --~~~~l~~L~~L~Ls~N-~l~~~~~-~~l~~l~~L-~L~L~~N~-l~~~~~---------~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 495 --AFTSLKMMNHVDLSHN-RLTSSSI-EALSHLKGI-YLNLASNH-ISIILP---------SLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp --TTTTCTTCCEEECCSS-CCCGGGG-GGGTTCCSC-EEECCSSC-CCCCCG---------GGHHHHHTSSEEECTTCCE
T ss_pred --hhccccCCCEEECCCC-ccCcCCh-hHhCccccc-EEECcCCc-ccccCH---------hhcccCCCCCEEeCCCCCc
Confidence 3677899999999886 4555444 447889999 99999998 665543 2234678999999998663
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=3.1e-28 Score=306.23 Aligned_cols=542 Identities=15% Similarity=0.074 Sum_probs=338.5
Q ss_pred hhcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCC
Q 038494 516 IIQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINL 592 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L 592 (1209)
..+.+++++.++++.+..++.. ..+++|++|++++| .+..+++..|.++++|++|++++|.++.+|. .|+++++|
T Consensus 22 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN--TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS--CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC--ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 3467899999999999888763 47899999999988 4666777778999999999999999999987 69999999
Q ss_pred cEEeccCcccCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhc--CCCCCcEEEC
Q 038494 593 QTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVIS--KFSRLEELYM 667 (1209)
Q Consensus 593 ~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~--~L~~L~~L~l 667 (1209)
++|++++|.+..+ ..++++++|++|++++|.+... |..++++++|++|++++ +.++..++..+. .+++|++|++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhccccccccEEEC
Confidence 9999999999887 5799999999999999988865 55688999999999999 567777665554 5689999999
Q ss_pred CCCCCccccccCCCccchhhhC------------------------CCCCCCEEEeeccCCCCCCcc-c---ccCCCCeE
Q 038494 668 GDSFPQWDKVEGGSNASLAELK------------------------GLSKLTTLEIQVQDAQMLPQD-L---VFVELPRY 719 (1209)
Q Consensus 668 ~~~~~~~~~~~~~~~~~l~~L~------------------------~l~~L~~L~l~~~~~~~~~~~-~---~~~~L~~L 719 (1209)
+++.... .....+..+. ..++|+.|+++.+........ . ...+|+.|
T Consensus 179 ~~n~l~~-----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 179 SSNQIKE-----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp TTCCCCC-----BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred CCCcccc-----cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 8874321 1111111111 125677777776655433322 1 12346666
Q ss_pred EEEEcccC---ccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccccccc-----cccc-cccCCCCccC
Q 038494 720 RICIGEAW---GIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQ-----NVVH-ELDDGEGFPR 790 (1209)
Q Consensus 720 ~l~~~~~~---~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~-~l~~~~~l~~ 790 (1209)
.+..+... +.+......++.+.+....... ........+++|+.|.+.+..... .++. .-..++.+++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH---LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE---ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCc---cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 65432211 1122223334444443322111 000001112344555443311100 0000 0001345566
Q ss_pred CcEEEEecccCceeeeccCCccccccCCcccEEeccccc-ccchhcccccccccccCCccEEEEecCCCccccccHHHHh
Q 038494 791 LKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLI-NLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIAR 869 (1209)
Q Consensus 791 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 869 (1209)
|++|+++++.-.. +. ......+++|+.|+++++. .+..+....+.. ...++|+.|++++| .++.+++ ..+.
T Consensus 331 L~~L~l~~n~l~~-~~----~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~-~~~~~L~~L~L~~n-~l~~~~~-~~~~ 402 (680)
T 1ziw_A 331 LEHLNMEDNDIPG-IK----SNMFTGLINLKYLSLSNSFTSLRTLTNETFVS-LAHSPLHILNLTKN-KISKIES-DAFS 402 (680)
T ss_dssp CCEEECCSCCBCC-CC----TTTTTTCTTCCEEECTTCBSCCCEECTTTTGG-GTTSCCCEEECTTS-CCCEECT-TTTT
T ss_pred CCEEECCCCccCC-CC----hhHhccccCCcEEECCCCchhhhhcchhhhcc-cccCcCceEECCCC-CCCeECh-hhhh
Confidence 6666666554211 10 0012345666666666532 111111111111 11246667776666 3444433 2345
Q ss_pred hcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccccc
Q 038494 870 NLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIA 949 (1209)
Q Consensus 870 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 949 (1209)
.+++|+.|+++++.-...++. ..+..+++|+.|++++|......+. ....
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~----------------------~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~~~ 452 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTG----------------------QEWRGLENIFEIYLSYNKYLQLTRN--------SFAL 452 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCS----------------------GGGTTCTTCCEEECCSCSEEECCTT--------TTTT
T ss_pred CCCCCCEEeCCCCcCccccCc----------------------ccccCcccccEEecCCCCcceeChh--------hhhc
Confidence 667777777776532211111 2245678999999999874322111 2345
Q ss_pred cccchhhhhccCCc--ccccccccccccCCCcceEeeccCCCccccccCccccCCCcccccccccccccccccccccchh
Q 038494 950 FSELKVLILNYLSR--LTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSI 1027 (1209)
Q Consensus 950 ~~~L~~L~L~~~~~--L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~ 1027 (1209)
+|+|+.|++.++.- +... ......+++|+.|++++|. ++. +|...+. .+++|+.|++++|
T Consensus 453 ~~~L~~L~l~~n~l~~~~~~--p~~~~~l~~L~~L~Ls~N~-l~~---------i~~~~~~------~l~~L~~L~Ls~N 514 (680)
T 1ziw_A 453 VPSLQRLMLRRVALKNVDSS--PSPFQPLRNLTILDLSNNN-IAN---------INDDMLE------GLEKLEILDLQHN 514 (680)
T ss_dssp CTTCCEEECTTSCCBCTTCS--SCTTTTCTTCCEEECCSSC-CCC---------CCTTTTT------TCTTCCEEECCSS
T ss_pred CcccccchhccccccccccC--CcccccCCCCCEEECCCCC-CCc---------CChhhhc------cccccCEEeCCCC
Confidence 78999999988763 2222 1223468999999999974 553 3333222 5889999999998
Q ss_pred hhhhhh----------hhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcE
Q 038494 1028 MQKYYK----------EMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRR 1097 (1209)
Q Consensus 1028 ~~~~~~----------~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~ 1097 (1209)
...... .+..+++|+.|++++ +.++.++... +..+++|+.|++++ +++.. +|...+.++++|+.
T Consensus 515 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~---~~~l~~L~~L~Ls~-N~l~~-l~~~~~~~l~~L~~ 588 (680)
T 1ziw_A 515 NLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEV---FKDLFELKIIDLGL-NNLNT-LPASVFNNQVSLKS 588 (680)
T ss_dssp CCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCCCTTT---TTTCTTCCEEECCS-SCCCC-CCTTTTTTCTTCCE
T ss_pred CccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCCCHHH---cccccCcceeECCC-CCCCc-CCHhHhCCCCCCCE
Confidence 654321 145789999999998 4677665432 67789999999976 46665 57777889999999
Q ss_pred EEEccCCchhhhhhcccccccccCCCc-cccccccccccccccc
Q 038494 1098 LEVRNCDSLEEVLRLEELNADKEHIGP-MFPKLSNLRLIDLPKL 1140 (1209)
Q Consensus 1098 L~i~~c~~l~~l~~~~~~~~~~~~~~~-~l~~L~~L~i~~c~~l 1140 (1209)
|++++|. ++.+++.. +. .+++|+.|++.++|-.
T Consensus 589 L~L~~N~-l~~~~~~~---------~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 589 LNLQKNL-ITSVEKKV---------FGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp EECTTSC-CCBCCHHH---------HHHHHTTCSEEECTTCCCC
T ss_pred EECCCCc-CCccChhH---------hcccccccCEEEccCCCcc
Confidence 9999997 77664321 22 5789999999986533
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=290.21 Aligned_cols=133 Identities=20% Similarity=0.274 Sum_probs=85.5
Q ss_pred ccccccccccchhhhhhh---hhhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhh
Q 038494 1015 ELHHWEGNNLNSIMQKYY---KEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRC 1091 (1209)
Q Consensus 1015 ~l~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 1091 (1209)
.+++|+.|++++|..... ..+..+++|++|++++|. +..... ..+..+++|++|++++|.-....+|. .+..
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~ 468 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPD-IFTE 468 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECCT---TTTTTCTTCCEEECTTCEEGGGEECS-CCTT
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccch---hhhhcCCcCcEEECcCCcCccccchh-hhhc
Confidence 355666666666543322 123466777888887754 333222 23566788888888887533223453 3577
Q ss_pred hccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccccCCCccCCCCccEEeeecCC
Q 038494 1092 LNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIELPELRYLTIENCP 1165 (1209)
Q Consensus 1092 l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l~~L~~L~i~~C~ 1165 (1209)
+++|+.|++++|. ++.++ ...+..+++|+.|++++| +++.++. +.+..+++|+.|++++++
T Consensus 469 l~~L~~L~l~~n~-l~~~~---------~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 469 LRNLTFLDLSQCQ-LEQLS---------PTAFNSLSSLQVLNMASN-QLKSVPD--GIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CTTCCEEECTTSC-CCEEC---------TTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred ccCCCEEECCCCc-cccCC---------hhhhhcccCCCEEeCCCC-cCCCCCH--HHhhcccCCcEEEecCCc
Confidence 8888888888887 55442 223456788888888884 6776654 567788888888888854
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=5.5e-26 Score=278.30 Aligned_cols=173 Identities=20% Similarity=0.233 Sum_probs=134.9
Q ss_pred EEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccCccc
Q 038494 524 ISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDWCQL 602 (1209)
Q Consensus 524 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~l 602 (1209)
....++.+..+|... .+++++|++++| .+..++...|.++++|++|++++|.++.++ ..++.+++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFN--KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSS--CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccC-CCCccEEECcCC--ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 455667777888754 378999999988 466666666789999999999999998765 5789999999999999998
Q ss_pred CCc--ccccCCCCCCEEEccCCCCCc--cchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccccc
Q 038494 603 EDV--AAIGQLKKLEILSFRYSDIKQ--LPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVE 678 (1209)
Q Consensus 603 ~~l--~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 678 (1209)
+.+ ..++++++|++|++++|.++. .|..++++++|++|++++|..+..+++..++++++|++|+++++...
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 161 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR----- 161 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence 887 448999999999999998884 46778899999999999866577777666888999999998776421
Q ss_pred CCCccchhhhCCCCCCCEEEeeccCCCCC
Q 038494 679 GGSNASLAELKGLSKLTTLEIQVQDAQML 707 (1209)
Q Consensus 679 ~~~~~~l~~L~~l~~L~~L~l~~~~~~~~ 707 (1209)
......+..+++|+.|+++.+....+
T Consensus 162 ---~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 162 ---NYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp ---EECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred ---ccChhhhhccccCceEecccCccccc
Confidence 11234567777888888877655433
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=8.6e-26 Score=289.26 Aligned_cols=152 Identities=21% Similarity=0.315 Sum_probs=88.9
Q ss_pred hcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCc
Q 038494 517 IQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQ 593 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~ 593 (1209)
.+.+++++.+++|.+..++. ...+++|++|++++|. ....+++..|.++++|++|+|++|.+..+ |..|+.+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccC
Confidence 45566666666666655432 2256666666666653 34445455556666666666666666644 55666666666
Q ss_pred EEeccCcccCC--ccc--ccCCCCCCEEEccCCCCCccc--hhccCCCCCCEEeccCCCCCcccCchhhcCC--CCCcEE
Q 038494 594 TLCLDWCQLED--VAA--IGQLKKLEILSFRYSDIKQLP--LEIGQLAQLQLLDLSNCSSLVVIAPNVISKF--SRLEEL 665 (1209)
Q Consensus 594 ~L~l~~~~l~~--l~~--i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L--~~L~~L 665 (1209)
+|++++|.+.. +.. ++++++|++|++++|.+..++ ..++++++|++|++++ +.+....+..+..+ ++|+.|
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHCSSCCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCCccceE
Confidence 66666666654 222 666666666666666665442 3466666666666666 34444433445444 566666
Q ss_pred ECCCC
Q 038494 666 YMGDS 670 (1209)
Q Consensus 666 ~l~~~ 670 (1209)
+++.+
T Consensus 180 ~L~~n 184 (844)
T 3j0a_A 180 SLAAN 184 (844)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 66554
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=5.8e-25 Score=281.55 Aligned_cols=510 Identities=15% Similarity=0.099 Sum_probs=337.9
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcc-cccc-cccccCCCCCcEEeccC
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIH-FSSL-SSSLGHLINLQTLCLDW 599 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~L~~L~l~~ 599 (1209)
+.+..+++.+..+|. -.+++++|++++| .+..+....|.++++|++|+|++|. +..+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N--~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN--YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESC--CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCC--cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 455666778888887 5689999999998 4667777778999999999999994 4466 67899999999999999
Q ss_pred cccCCc--ccccCCCCCCEEEccCCCCCc-cchh--ccCCCCCCEEeccCCCCCccc-CchhhcCCCCCcEEECCCCCCc
Q 038494 600 CQLEDV--AAIGQLKKLEILSFRYSDIKQ-LPLE--IGQLAQLQLLDLSNCSSLVVI-APNVISKFSRLEELYMGDSFPQ 673 (1209)
Q Consensus 600 ~~l~~l--~~i~~L~~L~~L~l~~~~~~~-lp~~--i~~L~~L~~L~l~~~~~l~~~-~~~~l~~L~~L~~L~l~~~~~~ 673 (1209)
|.+..+ ..++++++|++|++++|.+.. +|.. ++++++|++|++++| .+... ++..++++++|++|+++++...
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence 999887 689999999999999998885 5555 899999999999994 55554 3345899999999999886431
Q ss_pred cccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhh
Q 038494 674 WDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLE 753 (1209)
Q Consensus 674 ~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~ 753 (1209)
......+..+.. ++|+.|+++.+........ .+.. +.+. .
T Consensus 162 -----~~~~~~l~~l~~-~~L~~L~L~~n~l~~~~~~-~~~~-----------------------------~~~~--~-- 201 (844)
T 3j0a_A 162 -----LVCEHELEPLQG-KTLSFFSLAANSLYSRVSV-DWGK-----------------------------CMNP--F-- 201 (844)
T ss_dssp -----CCCSGGGHHHHH-CSSCCCEECCSBSCCCCCC-CCCS-----------------------------SSCT--T--
T ss_pred -----eeCHHHcccccC-CccceEECCCCcccccccc-chhh-----------------------------cCCc--c--
Confidence 111222333322 6888888887755321110 0000 0000 0
Q ss_pred HHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeee-----cc-CCccccccCCcccEEeccc
Q 038494 754 NYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIV-----GS-VGRVHRKVFPLLESLSLYK 827 (1209)
Q Consensus 754 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~-----~~-~~~~~~~~~~~L~~L~l~~ 827 (1209)
....|+.|++.+..........+...-...+++.|.+..+..-..+. .. ......-..++|+.|++++
T Consensus 202 ------~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~ 275 (844)
T 3j0a_A 202 ------RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH 275 (844)
T ss_dssp ------TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT
T ss_pred ------ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC
Confidence 00124555554432222222222212234578888876322111000 00 0001111247899999988
Q ss_pred ccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCcccccccccc
Q 038494 828 LINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIA 907 (1209)
Q Consensus 828 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 907 (1209)
+ .+.......+ +.+++|+.|+++++ .++.+++ ..+..+++|+.|++++|. +..+..
T Consensus 276 n-~l~~~~~~~~---~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~----------------- 331 (844)
T 3j0a_A 276 G-FVFSLNSRVF---ETLKDLKVLNLAYN-KINKIAD-EAFYGLDNLQVLNLSYNL-LGELYS----------------- 331 (844)
T ss_dssp C-CCCEECSCCS---SSCCCCCEEEEESC-CCCEECT-TTTTTCSSCCEEEEESCC-CSCCCS-----------------
T ss_pred C-cccccChhhh---hcCCCCCEEECCCC-cCCCCCh-HHhcCCCCCCEEECCCCC-CCccCH-----------------
Confidence 4 4554432222 45899999999997 5555544 346789999999999873 322211
Q ss_pred CCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccC
Q 038494 908 DDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRC 987 (1209)
Q Consensus 908 ~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C 987 (1209)
..+..+++|+.|++++|. +..++. .....+++|+.|+++++. ++.++ .+++|+.|.+++|
T Consensus 332 -----~~~~~l~~L~~L~L~~N~-i~~~~~-------~~~~~l~~L~~L~Ls~N~-l~~i~------~~~~L~~L~l~~N 391 (844)
T 3j0a_A 332 -----SNFYGLPKVAYIDLQKNH-IAIIQD-------QTFKFLEKLQTLDLRDNA-LTTIH------FIPSIPDIFLSGN 391 (844)
T ss_dssp -----CSCSSCTTCCEEECCSCC-CCCCCS-------SCSCSCCCCCEEEEETCC-SCCCS------SCCSCSEEEEESC
T ss_pred -----HHhcCCCCCCEEECCCCC-CCccCh-------hhhcCCCCCCEEECCCCC-CCccc------CCCCcchhccCCC
Confidence 234567899999999984 332221 123568999999999875 44331 2789999999987
Q ss_pred CCccccccCccccCCCcccccccccccccccccccccchhhhhhh---hhhccccccceEEeeccCCceeeccCCCCCcc
Q 038494 988 PNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKYY---KEMIGFRDIWYLQLSHFPRLKEIWHGQALPVS 1064 (1209)
Q Consensus 988 ~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~ 1064 (1209)
+ +..+ |. ...+++.|++++|..... ..+..+++|+.|+++++ .++.+... ..+.
T Consensus 392 ~-l~~l---------~~----------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~~ 448 (844)
T 3j0a_A 392 K-LVTL---------PK----------INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGD--QTPS 448 (844)
T ss_dssp C-CCCC---------CC----------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSS--SSSC
T ss_pred C-cccc---------cc----------cccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccc--cccc
Confidence 4 4422 22 245677888887754322 22447899999999994 55544322 1244
Q ss_pred cCCCccEEEEecCCCCccc----cchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCccccccccccccccccc
Q 038494 1065 FFNNLARLVVDDCTNMSSA----IPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKL 1140 (1209)
Q Consensus 1065 ~l~~L~~L~i~~c~~l~~~----~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l 1140 (1209)
.+++|+.|+++++. +... .+...+.++++|+.|++++|. ++.+++ ..+..+++|+.|++++ +++
T Consensus 449 ~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~~l~~L~~L~Ls~-N~l 516 (844)
T 3j0a_A 449 ENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPP---------GVFSHLTALRGLSLNS-NRL 516 (844)
T ss_dssp SCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHH-HTTCCT---------TSSSSCCSCSEEEEES-CCC
T ss_pred cCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCc-ccccCh---------hHccchhhhheeECCC-CCC
Confidence 57899999999864 3211 222447789999999999997 776643 3456789999999998 688
Q ss_pred ccccccCCCccCCCCccEEeeecCC
Q 038494 1141 KRFCNFTGNIIELPELRYLTIENCP 1165 (1209)
Q Consensus 1141 ~~l~~~~~~l~~l~~L~~L~i~~C~ 1165 (1209)
+.++. +.+. ++|+.|+++++.
T Consensus 517 ~~l~~--~~~~--~~L~~L~Ls~N~ 537 (844)
T 3j0a_A 517 TVLSH--NDLP--ANLEILDISRNQ 537 (844)
T ss_dssp SSCCC--CCCC--SCCCEEEEEEEC
T ss_pred CccCh--hhhh--ccccEEECCCCc
Confidence 88875 3333 899999998863
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.6e-24 Score=270.87 Aligned_cols=526 Identities=16% Similarity=0.136 Sum_probs=314.7
Q ss_pred cCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc
Q 038494 527 PYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV 605 (1209)
Q Consensus 527 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l 605 (1209)
++.++..+|.... +++++|++++| .+..+++..|.++++|++|+|++|.|+.+|+ +|.++++|++|+|++|.++.+
T Consensus 39 ~~~~l~~vP~~lp-~~~~~LdLs~N--~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPDNLP-FSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCSSSC-TTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCCCCC-cCCCEEEeeCC--CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 3445667776542 57999999998 5788888888999999999999999998865 689999999999999999888
Q ss_pred --ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCccc-CchhhcCCCCCcEEECCCCCCccccccCCC
Q 038494 606 --AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVI-APNVISKFSRLEELYMGDSFPQWDKVEGGS 681 (1209)
Q Consensus 606 --~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~-~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 681 (1209)
..|.++.+|++|++++|.++.+|.. ++++++|++|++++ +.+..+ .+..++.+++|++|+++++... ...
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~ 189 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-----SIY 189 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCC-----EEC
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCcccc-----ccc
Confidence 4689999999999999999988764 89999999999998 455543 2445788999999999887432 112
Q ss_pred ccchhhhCCCCC-CCEEEeeccCCCCCCccc-ccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHH
Q 038494 682 NASLAELKGLSK-LTTLEIQVQDAQMLPQDL-VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKM 759 (1209)
Q Consensus 682 ~~~l~~L~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~ 759 (1209)
...+..+..+.. +..++++.+.+..++... ....+..+.+ ..+............
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l-----------------------~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL-----------------------RNNFDSLNVMKTCIQ 246 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE-----------------------ESCCSSHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh-----------------------hcccccccccchhhc
Confidence 233445555543 336666666554433221 1111111111 111111122222222
Q ss_pred Hhcccceeeecc--cccccccc-ccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcc
Q 038494 760 LLKLTEDIRLEE--LTGVQNVV-HELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICH 836 (1209)
Q Consensus 760 ~~~~L~~L~l~~--~~~~~~~~-~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 836 (1209)
.+..++...+.. ........ .....+..+..+..+.+............. .....+.+++.+.+.+.. +..+.
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~-~~~~~- 322 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGII--DLFNCLTNVSSFSLVSVT-IERVK- 322 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECT--TTTGGGTTCSEEEEESCE-EEECG-
T ss_pred CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchh--hhhhhhcccccccccccc-ccccc-
Confidence 223333222211 11100000 011112334445554444332111110000 122335566666666532 22211
Q ss_pred cccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCcc
Q 038494 837 SQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVG 916 (1209)
Q Consensus 837 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 916 (1209)
....+..|+.|++.+|. +..++. ..++.|+.+.+..+..-.. ....
T Consensus 323 ----~~~~~~~L~~L~l~~~~-~~~~~~----~~l~~L~~l~l~~n~~~~~-------------------------~~~~ 368 (635)
T 4g8a_A 323 ----DFSYNFGWQHLELVNCK-FGQFPT----LKLKSLKRLTFTSNKGGNA-------------------------FSEV 368 (635)
T ss_dssp ----GGGSCCCCSEEEEESCE-ESSCCC----CBCTTCCEEEEESCCSCCB-------------------------CCCC
T ss_pred ----ccccchhhhhhhccccc-ccCcCc----ccchhhhhcccccccCCCC-------------------------cccc
Confidence 11345677888887763 333332 2356777777765421110 1123
Q ss_pred CccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccC
Q 038494 917 IPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQG 996 (1209)
Q Consensus 917 ~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~ 996 (1209)
.+++|+.|+++.+...... .........++|+.|++..+..... ......+++|+.+++..+.....
T Consensus 369 ~l~~L~~L~ls~n~l~~~~------~~~~~~~~~~~L~~L~~~~~~~~~~---~~~~~~l~~L~~l~l~~~~~~~~---- 435 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKG------CCSQSDFGTISLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQM---- 435 (635)
T ss_dssp BCTTCCEEECCSSCCBEEE------ECCHHHHSCSCCCEEECCSCSEEEE---CSCCTTCTTCCEEECTTSEEEST----
T ss_pred cccccccchhhcccccccc------ccccchhhhhhhhhhhccccccccc---cccccccccccchhhhhcccccc----
Confidence 4577888888775432110 0001112356677777666543221 11223578888888877654431
Q ss_pred ccccCCCcccccccccccccccccccccchhhhhh--hhhhccccccceEEeeccCCceeeccCCCCCcccCCCccEEEE
Q 038494 997 ILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKY--YKEMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVV 1074 (1209)
Q Consensus 997 ~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i 1074 (1209)
.+...+. .+.+++.++++.|.... ......+++|+.|+++++.....+... .+..+++|++|++
T Consensus 436 -----~~~~~~~------~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~L 501 (635)
T 4g8a_A 436 -----SEFSVFL------SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDL 501 (635)
T ss_dssp -----TSSCTTT------TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEEC
T ss_pred -----ccccccc------cccccccccccccccccccccccccchhhhhhhhhhcccccccCch---hhhhccccCEEEC
Confidence 1222222 47778888887765432 234457788999999887655544332 3667889999999
Q ss_pred ecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccccCCCccCC-
Q 038494 1075 DDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIEL- 1153 (1209)
Q Consensus 1075 ~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l- 1153 (1209)
++| .+... +...+.++++|++|++++|. |+.+++ ..+..+++|+.|++++ ++++.++. +.+..+
T Consensus 502 s~N-~L~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~---------~~~~~l~~L~~L~Ls~-N~l~~~~~--~~l~~l~ 566 (635)
T 4g8a_A 502 SQC-QLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDT---------FPYKCLNSLQVLDYSL-NHIMTSKK--QELQHFP 566 (635)
T ss_dssp TTS-CCCEE-CTTTTTTCTTCCEEECTTSC-CCBCCC---------GGGTTCTTCCEEECTT-SCCCBCCS--SCTTCCC
T ss_pred CCC-ccCCc-ChHHHcCCCCCCEEECCCCc-CCCCCh---------hHHhCCCCCCEEECCC-CcCCCCCH--HHHHhhh
Confidence 886 56654 44457889999999999987 766532 3345788999999998 67877754 667777
Q ss_pred CCccEEeeecC
Q 038494 1154 PELRYLTIENC 1164 (1209)
Q Consensus 1154 ~~L~~L~i~~C 1164 (1209)
++|+.|+++++
T Consensus 567 ~~L~~L~L~~N 577 (635)
T 4g8a_A 567 SSLAFLNLTQN 577 (635)
T ss_dssp TTCCEEECTTC
T ss_pred CcCCEEEeeCC
Confidence 57999999773
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=264.44 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=94.2
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCc
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWC 600 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~ 600 (1209)
+++.++++.+..+|.... +++++|++++| .+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQN--YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSS--CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCC--cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 567777777777776544 77777777776 35556656667777777777777777765 557777777777777777
Q ss_pred ccCCcccccCCCCCCEEEccCCCCCc--cchhccCCCCCCEEeccCCCCCcccCchhhcCCCCC--cEEECCCC
Q 038494 601 QLEDVAAIGQLKKLEILSFRYSDIKQ--LPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRL--EELYMGDS 670 (1209)
Q Consensus 601 ~l~~l~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L--~~L~l~~~ 670 (1209)
.++.++.. .+++|++|++++|.++. +|..++++++|++|++++ +.+.. ..+..+++| ++|+++++
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~---~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLST-THLEK---SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEE-SSCCG---GGGGGGTTSCEEEEEEEEC
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecC-cccch---hhccccccceeeEEEeecc
Confidence 77766333 67777777777777664 456677777777777776 33433 224445555 66665544
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.7e-24 Score=266.63 Aligned_cols=481 Identities=17% Similarity=0.174 Sum_probs=254.6
Q ss_pred EccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccCcccC
Q 038494 525 SIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDWCQLE 603 (1209)
Q Consensus 525 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~l~ 603 (1209)
.-.+..+..+|... .+++++|++++| .+..++...|.++++|++|++++|.++.++ ..|+++++|++|++++|.++
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp ECCSSCCSSCCSSS-CSSCCEEECCSC--CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EeCCCCccccCCCc-cccccEEEccCC--ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 33344455555433 246777777666 345555555667777777777777776654 35677777777777777766
Q ss_pred Cc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccC-chhhcCCCCCcEEECCCCCCccccccC
Q 038494 604 DV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIA-PNVISKFSRLEELYMGDSFPQWDKVEG 679 (1209)
Q Consensus 604 ~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~ 679 (1209)
.+ ..++++++|++|++++|.++.+|. .++++++|++|++++ +.+..+. +..++++++|++|+++++....
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~----- 163 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQS----- 163 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECTTSCCCE-----
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecChhhhcccCCCCEEeCcCCccce-----
Confidence 65 456777777777777777766654 466777777777776 3444321 2336677777777776653210
Q ss_pred CCccchhhhCCCCCC-CEEEeeccCCCCCCcc-cccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHH
Q 038494 680 GSNASLAELKGLSKL-TTLEIQVQDAQMLPQD-LVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGM 757 (1209)
Q Consensus 680 ~~~~~l~~L~~l~~L-~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 757 (1209)
.....+..+.+++.+ ..|+++.+....++.. ....+|+.|.+. ... .... .+
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~---------------------~n~--~~~~---~~ 217 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR---------------------NNF--DSLN---VM 217 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE---------------------SCC--SCTT---HH
T ss_pred ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc---------------------ccc--cccc---ch
Confidence 111223333333222 4666666554433322 111122222221 100 0000 01
Q ss_pred HHHhcccceeeeccccccccccccccCCCCccCCcEEEEec--cc---CceeeeccCCccccccCC--cccEEecccccc
Q 038494 758 KMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVER--CS---EILHIVGSVGRVHRKVFP--LLESLSLYKLIN 830 (1209)
Q Consensus 758 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~--~~---~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~ 830 (1209)
...+. .+++++.+.+.. .. .+..+... ....++ .++.+.+.++..
T Consensus 218 ~~~~~------------------------~l~~l~~~~l~~~~~~~~~~l~~~~~~----~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 218 KTCIQ------------------------GLAGLEVHRLVLGEFRNEGNLEKFDKS----ALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp HHHHH------------------------TTTTCEEEEEEEEECCCCSSCEECCTT----TTGGGGGSEEEEEEEEETTE
T ss_pred hhhhc------------------------CccccceeeeccccccCchhhhhcchh----hhccccccchhhhhhhcchh
Confidence 11111 122222222211 00 00000000 000011 123333333222
Q ss_pred cchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCC
Q 038494 831 LEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDD 910 (1209)
Q Consensus 831 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1209)
+....... .+.+++|+.|++++| .++.+|. .+..+ +|++|++++|
T Consensus 270 ~~~~~~~~---~~~l~~L~~L~l~~~-~l~~l~~--~~~~~-~L~~L~l~~n---------------------------- 314 (570)
T 2z63_A 270 YLDDIIDL---FNCLTNVSSFSLVSV-TIERVKD--FSYNF-GWQHLELVNC---------------------------- 314 (570)
T ss_dssp EESCSTTT---TGGGTTCSEEEEESC-EECSCCB--CCSCC-CCSEEEEESC----------------------------
T ss_pred hhhhchhh---hcCcCcccEEEecCc-cchhhhh--hhccC-CccEEeeccC----------------------------
Confidence 21111111 123455555555554 2333333 12233 4555555544
Q ss_pred CCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCCCc
Q 038494 911 TAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNM 990 (1209)
Q Consensus 911 ~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L 990 (1209)
..- .++ ...+++|+.|+++++......+. ..+++|+.|++++|. +
T Consensus 315 -------------------~~~-~l~----------~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-l 359 (570)
T 2z63_A 315 -------------------KFG-QFP----------TLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNG-L 359 (570)
T ss_dssp -------------------BCS-SCC----------BCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSC-C
T ss_pred -------------------ccc-ccC----------cccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCc-c
Confidence 211 111 12356666666666553333222 246788888887764 2
Q ss_pred cccccCccccCCCcccccccccccccccccccccchhhhhhhh-hhccccccceEEeeccCCceeeccCCCCCcccCCCc
Q 038494 991 KTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKYYK-EMIGFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNL 1069 (1209)
Q Consensus 991 ~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L 1069 (1209)
.... ..|.. ...+++|++|++++|...... .+..+++|++|+++++ .+...... ..+..+++|
T Consensus 360 ~~~~------~~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~~l~~L 423 (570)
T 2z63_A 360 SFKG------CCSQS-------DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEF--SVFLSLRNL 423 (570)
T ss_dssp BEEE------EEEHH-------HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESCTTS--CTTTTCTTC
T ss_pred Cccc------ccccc-------ccccCccCEEECCCCccccccccccccCCCCEEEccCC-ccccccch--hhhhcCCCC
Confidence 2110 00111 114678888888877643222 2567899999999985 44443221 236778999
Q ss_pred cEEEEecCCCCccccchhhHhhhccCcEEEEccCCchh--hhhhcccccccccCCCcccccccccccccccccccccccC
Q 038494 1070 ARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLE--EVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFT 1147 (1209)
Q Consensus 1070 ~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~--~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 1147 (1209)
++|++++|. +....| ..+.++++|+.|++++|. ++ .+| ..+..+++|+.|++++| .++.++.
T Consensus 424 ~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~p----------~~~~~l~~L~~L~l~~n-~l~~~~~-- 487 (570)
T 2z63_A 424 IYLDISHTH-TRVAFN-GIFNGLSSLEVLKMAGNS-FQENFLP----------DIFTELRNLTFLDLSQC-QLEQLSP-- 487 (570)
T ss_dssp CEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCE-EGGGEEC----------SCCTTCTTCCEEECTTS-CCCEECT--
T ss_pred CEEeCcCCc-ccccch-hhhhcCCcCcEEECcCCc-Cccccch----------hhhhcccCCCEEECCCC-ccccCCh--
Confidence 999999875 443334 457889999999999998 54 232 34457899999999995 5666632
Q ss_pred CCccCCCCccEEeeecCCCccccc
Q 038494 1148 GNIIELPELRYLTIENCPDMETFI 1171 (1209)
Q Consensus 1148 ~~l~~l~~L~~L~i~~C~~l~~l~ 1171 (1209)
..+..+++|++|++++| +++.+|
T Consensus 488 ~~~~~l~~L~~L~l~~n-~l~~~~ 510 (570)
T 2z63_A 488 TAFNSLSSLQVLNMASN-QLKSVP 510 (570)
T ss_dssp TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred hhhhcccCCCEEeCCCC-cCCCCC
Confidence 57889999999999987 454444
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=3.1e-24 Score=262.70 Aligned_cols=381 Identities=16% Similarity=0.143 Sum_probs=236.9
Q ss_pred hcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccccc-ccCCCCCc
Q 038494 517 IQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSS-LGHLINLQ 593 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~ 593 (1209)
....++++.++++.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|.++.+|.. ++++++|+
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 101 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS--RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLK 101 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC--CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCc
Confidence 34689999999999987753 347999999999998 46677777789999999999999999988764 99999999
Q ss_pred EEeccCcccCCc---ccccCCCCCCEEEccCCC-CCccc-hhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECC
Q 038494 594 TLCLDWCQLEDV---AAIGQLKKLEILSFRYSD-IKQLP-LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 594 ~L~l~~~~l~~l---~~i~~L~~L~~L~l~~~~-~~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 668 (1209)
+|++++|.++.+ ..++++++|++|++++|. +..+| ..+.++++|++|++++ +.+....+..++++++|++|+++
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTTTCSEEEEEEEE
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC-CcccccChhhhhccccCceEecc
Confidence 999999998854 678999999999999997 67776 4799999999999999 55666556669999999999997
Q ss_pred CCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcc-----cccCCCCeEEEEEcccCccccCCCCCccEEEEe
Q 038494 669 DSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQD-----LVFVELPRYRICIGEAWGIWRANSETSRLVQLH 743 (1209)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~ 743 (1209)
.+.... . .......+++|+.|+++.+.....+.. ....+|+.|.+.
T Consensus 181 ~n~~~~------~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~--------------------- 231 (549)
T 2z81_A 181 LSESAF------L--LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR--------------------- 231 (549)
T ss_dssp CSBSTT------H--HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE---------------------
T ss_pred cCcccc------c--chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc---------------------
Confidence 753210 0 011235688999999998876654211 122334444332
Q ss_pred cCCCcchhhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeecc--CCccccccCCccc
Q 038494 744 GLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGS--VGRVHRKVFPLLE 821 (1209)
Q Consensus 744 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~~~L~ 821 (1209)
...-.. .....+. .....+++|+.|.+.+|.... +... ........+++|+
T Consensus 232 ~n~l~~--~~~~~l~------------------------~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~~~~l~~L~ 284 (549)
T 2z81_A 232 GSVLTD--ESFNELL------------------------KLLRYILELSEVEFDDCTLNG-LGDFNPSESDVVSELGKVE 284 (549)
T ss_dssp SCEEEH--HHHHHHH------------------------GGGGGCTTCCEEEEESCEEEC-CSCCCCCTTTCCCCCTTCC
T ss_pred ccccch--hHHHHHH------------------------HHhhhhccccccccccccccc-cccccccchhhhhhhcccc
Confidence 110000 0000000 002345667777777664211 0000 0011224466777
Q ss_pred EEecccccccchhc-cccccc-ccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCcc
Q 038494 822 SLSLYKLINLEAIC-HSQLRE-DQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTS 899 (1209)
Q Consensus 822 ~L~l~~~~~l~~~~-~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 899 (1209)
.|.+.++. +..+. ...++. ...+++|+.|++++| .++.+|. ..++++++|+.|++++|.-....+...
T Consensus 285 ~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~ip~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~------- 354 (549)
T 2z81_A 285 TVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENS-KVFLVPC-SFSQHLKSLEFLDLSENLMVEEYLKNS------- 354 (549)
T ss_dssp EEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCCCCH-HHHHHCTTCCEEECCSSCCCHHHHHHH-------
T ss_pred cccccccc-cchhhhcccchhhhhhcccceEEEeccC-ccccCCH-HHHhcCccccEEEccCCccccccccch-------
Confidence 77776642 11110 000000 123578888999887 4666665 344678888888888874322211000
Q ss_pred ccccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCc
Q 038494 900 LGFNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSL 979 (1209)
Q Consensus 900 ~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L 979 (1209)
..++.+++|+.|++++|.- +.++.. + .....+++|+.|++++| .++.++.. ...+++|
T Consensus 355 -------------~~~~~l~~L~~L~Ls~N~l-~~~~~~-~----~~~~~l~~L~~L~Ls~N-~l~~lp~~--~~~~~~L 412 (549)
T 2z81_A 355 -------------ACKGAWPSLQTLVLSQNHL-RSMQKT-G----EILLTLKNLTSLDISRN-TFHPMPDS--CQWPEKM 412 (549)
T ss_dssp -------------TCTTSSTTCCEEECTTSCC-CCHHHH-H----HHGGGCTTCCEEECTTC-CCCCCCSC--CCCCTTC
T ss_pred -------------hhhhccccCcEEEccCCcc-cccccc-h----hhhhcCCCCCEEECCCC-CCccCChh--hcccccc
Confidence 0124456777777777642 111100 0 01234566666666665 33333221 1234566
Q ss_pred ceEeeccCC
Q 038494 980 ERVSMIRCP 988 (1209)
Q Consensus 980 ~~L~i~~C~ 988 (1209)
++|++++|.
T Consensus 413 ~~L~Ls~N~ 421 (549)
T 2z81_A 413 RFLNLSSTG 421 (549)
T ss_dssp CEEECTTSC
T ss_pred cEEECCCCC
Confidence 666666653
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=9.2e-24 Score=264.27 Aligned_cols=236 Identities=14% Similarity=0.147 Sum_probs=143.5
Q ss_pred cccccccccccCCCCCcEEeccCcccCC------------------c-cccc--CCCCCCEEEccCCCCC-ccchhccCC
Q 038494 577 IHFSSLSSSLGHLINLQTLCLDWCQLED------------------V-AAIG--QLKKLEILSFRYSDIK-QLPLEIGQL 634 (1209)
Q Consensus 577 ~~i~~lp~~i~~l~~L~~L~l~~~~l~~------------------l-~~i~--~L~~L~~L~l~~~~~~-~lp~~i~~L 634 (1209)
|.++.+|..++++++|++|+|++|.++. + ..++ ++++|++|++++|.+. .+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4555577778888888888888888776 5 5555 7888888888887644 677778888
Q ss_pred CCCCEEeccCCCCCcc--cCchhhcCC-------CCCcEEECCCCCCccccccCCCccchh--hhCCCCCCCEEEeeccC
Q 038494 635 AQLQLLDLSNCSSLVV--IAPNVISKF-------SRLEELYMGDSFPQWDKVEGGSNASLA--ELKGLSKLTTLEIQVQD 703 (1209)
Q Consensus 635 ~~L~~L~l~~~~~l~~--~~~~~l~~L-------~~L~~L~l~~~~~~~~~~~~~~~~~l~--~L~~l~~L~~L~l~~~~ 703 (1209)
++|++|++++|..++. +|.. ++++ ++|++|++++|... .... .+..+++|+.|+++.+.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~L~---------~ip~~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNNLE---------EFPASASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSCCC---------BCCCHHHHTTCTTCCEEECTTSC
T ss_pred CCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCcCC---------ccCChhhhhcCCCCCEEECCCCC
Confidence 8888888887543554 4432 4444 48888888776421 1222 57777788888887776
Q ss_pred CCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeecccccccccccccc
Q 038494 704 AQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELD 783 (1209)
Q Consensus 704 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 783 (1209)
+..+| .+.++ ++|+.|.+.+.... .++ .
T Consensus 585 l~~lp---~~~~L---------------------------------------------~~L~~L~Ls~N~l~-~lp---~ 612 (876)
T 4ecn_A 585 VRHLE---AFGTN---------------------------------------------VKLTDLKLDYNQIE-EIP---E 612 (876)
T ss_dssp CCBCC---CCCTT---------------------------------------------SEESEEECCSSCCS-CCC---T
T ss_pred cccch---hhcCC---------------------------------------------CcceEEECcCCccc-cch---H
Confidence 65443 11111 23333444332211 111 1
Q ss_pred CCCCccC-CcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccc-ccc--ccCCccEEEEecCCCc
Q 038494 784 DGEGFPR-LKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLR-EDQ--FFSNLKIIEVESCDKL 859 (1209)
Q Consensus 784 ~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~--~l~~L~~L~l~~c~~l 859 (1209)
.+..+++ |+.|+++++. +..++ ........++|+.|+++++ .+..... .++ ..+ .+++|+.|++++| .+
T Consensus 613 ~l~~l~~~L~~L~Ls~N~-L~~lp---~~~~~~~~~~L~~L~Ls~N-~l~g~ip-~l~~~l~~~~~~~L~~L~Ls~N-~L 685 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNK-LKYIP---NIFNAKSVYVMGSVDFSYN-KIGSEGR-NISCSMDDYKGINASTVTLSYN-EI 685 (876)
T ss_dssp TSCEECTTCCEEECCSSC-CCSCC---SCCCTTCSSCEEEEECCSS-CTTTTSS-SCSSCTTTCCCCCEEEEECCSS-CC
T ss_pred HHhhccccCCEEECcCCC-CCcCc---hhhhccccCCCCEEECcCC-cCCCccc-cchhhhccccCCCcCEEEccCC-cC
Confidence 2456777 8888888876 32332 1112223455888888884 3332111 011 001 2458999999987 56
Q ss_pred cccccHHHHhhcccccEEEEecc
Q 038494 860 KHLFSFSIARNLLRLQKVKVASC 882 (1209)
Q Consensus 860 ~~l~~~~~~~~l~~L~~L~l~~c 882 (1209)
+.+|. ..+..+++|+.|++++|
T Consensus 686 ~~lp~-~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 686 QKFPT-ELFATGSPISTIILSNN 707 (876)
T ss_dssp CSCCH-HHHHTTCCCSEEECCSC
T ss_pred CccCH-HHHccCCCCCEEECCCC
Confidence 66665 34567889999999886
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=6.5e-24 Score=262.37 Aligned_cols=239 Identities=12% Similarity=0.134 Sum_probs=153.3
Q ss_pred CcccccccccccCCCCCcEEeccCcccCC------------------c-cccc--CCCCCCEEEccCCCCC-ccchhccC
Q 038494 576 GIHFSSLSSSLGHLINLQTLCLDWCQLED------------------V-AAIG--QLKKLEILSFRYSDIK-QLPLEIGQ 633 (1209)
Q Consensus 576 ~~~i~~lp~~i~~l~~L~~L~l~~~~l~~------------------l-~~i~--~L~~L~~L~l~~~~~~-~lp~~i~~ 633 (1209)
+|.++.+|..++++++|++|++++|.++. + ..++ ++++|++|++++|.+. .+|..+++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34566688888888888888888888877 6 6777 8888888888888655 67888888
Q ss_pred CCCCCEEeccCCCCCcc--cCchhhcCC------CCCcEEECCCCCCccccccCCCccchh--hhCCCCCCCEEEeeccC
Q 038494 634 LAQLQLLDLSNCSSLVV--IAPNVISKF------SRLEELYMGDSFPQWDKVEGGSNASLA--ELKGLSKLTTLEIQVQD 703 (1209)
Q Consensus 634 L~~L~~L~l~~~~~l~~--~~~~~l~~L------~~L~~L~l~~~~~~~~~~~~~~~~~l~--~L~~l~~L~~L~l~~~~ 703 (1209)
+++|++|++++|..++. +|.. ++++ ++|++|++++|... .... .+..+++|+.|+++.+.
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~---------~ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLK---------TFPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCS---------SCCCHHHHTTCTTCCEEECCSCC
T ss_pred CCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCC---------ccCchhhhccCCCCCEEeCcCCc
Confidence 88888888888543654 4433 6665 88888888776421 2223 57778888888887766
Q ss_pred CC-CCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccccccccccccc
Q 038494 704 AQ-MLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHEL 782 (1209)
Q Consensus 704 ~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 782 (1209)
.. .+| .+ .+ +++|+.|.+.+... ..++
T Consensus 342 l~g~ip-~~--~~---------------------------------------------l~~L~~L~L~~N~l-~~lp--- 369 (636)
T 4eco_A 342 LEGKLP-AF--GS---------------------------------------------EIKLASLNLAYNQI-TEIP--- 369 (636)
T ss_dssp CEEECC-CC--EE---------------------------------------------EEEESEEECCSSEE-EECC---
T ss_pred Cccchh-hh--CC---------------------------------------------CCCCCEEECCCCcc-cccc---
Confidence 54 333 10 00 12344444443221 1222
Q ss_pred cCCCCccC-CcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhccccccc----ccccCCccEEEEecCC
Q 038494 783 DDGEGFPR-LKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLRE----DQFFSNLKIIEVESCD 857 (1209)
Q Consensus 783 ~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~l~~L~~L~l~~c~ 857 (1209)
..+..+++ |++|+++++.. ..++. ......+++|+.|+++++ .+.......++. .-.+++|+.|++++|
T Consensus 370 ~~l~~l~~~L~~L~Ls~N~l-~~lp~---~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N- 443 (636)
T 4eco_A 370 ANFCGFTEQVENLSFAHNKL-KYIPN---IFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN- 443 (636)
T ss_dssp TTSEEECTTCCEEECCSSCC-SSCCS---CCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-
T ss_pred HhhhhhcccCcEEEccCCcC-cccch---hhhhcccCccCEEECcCC-cCCCcchhhhcccccccccCCCCCEEECcCC-
Confidence 12456777 99999988763 23332 112233568899999884 444332222210 014668999999987
Q ss_pred CccccccHHHHhhcccccEEEEeccc
Q 038494 858 KLKHLFSFSIARNLLRLQKVKVASCN 883 (1209)
Q Consensus 858 ~l~~l~~~~~~~~l~~L~~L~l~~c~ 883 (1209)
.++.+|. ..+..+++|+.|++++|.
T Consensus 444 ~l~~lp~-~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 444 QISKFPK-ELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp CCCSCCT-HHHHTTCCCSEEECCSSC
T ss_pred ccCcCCH-HHHccCCCCCEEECCCCC
Confidence 5667765 345668888888888763
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=6.5e-23 Score=256.35 Aligned_cols=511 Identities=16% Similarity=0.091 Sum_probs=280.5
Q ss_pred hhcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCC
Q 038494 516 IIQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINL 592 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L 592 (1209)
.++..++++.+++|.+..++.. ..+++|++|++++| .+..+++..|.++++|++|+|++|.++.+|. .|.++.+|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N--~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC--cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 4677899999999999998753 48999999999998 5788888889999999999999999999875 68999999
Q ss_pred cEEeccCcccCCc--ccccCCCCCCEEEccCCCCCc--cchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCc----E
Q 038494 593 QTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQ--LPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLE----E 664 (1209)
Q Consensus 593 ~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~----~ 664 (1209)
++|++++|.++.+ ..++++++|++|++++|.++. +|..++++++|++|++++ +.++.+++..+..+.+++ .
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCCE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccchhhhhhhhhh
Confidence 9999999999988 468999999999999998874 577889999999999999 677777766666555544 4
Q ss_pred EECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcc---cccCCCCeEEEEEcccCccccCCCCCccEEE
Q 038494 665 LYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQD---LVFVELPRYRICIGEAWGIWRANSETSRLVQ 741 (1209)
Q Consensus 665 L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~ 741 (1209)
++++.+..... .........+..+.+..+....-... .....++...+..+.......
T Consensus 206 ~~ls~n~l~~i---------~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~---------- 266 (635)
T 4g8a_A 206 LDLSLNPMNFI---------QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN---------- 266 (635)
T ss_dssp EECTTCCCCEE---------CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC----------
T ss_pred hhcccCccccc---------CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc----------
Confidence 55554432110 01111112233444443321100000 012222222222111100000
Q ss_pred EecCCCcchhhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCccc
Q 038494 742 LHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLE 821 (1209)
Q Consensus 742 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 821 (1209)
+....... ......+....+..................+.+++.+.+.++.... + .....+.+|+
T Consensus 267 l~~~~~~~--------~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~------~~~~~~~~L~ 331 (635)
T 4g8a_A 267 LEKFDKSA--------LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-V------KDFSYNFGWQ 331 (635)
T ss_dssp CSCCCTTT--------TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-C------GGGGSCCCCS
T ss_pred cccccccc--------cccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc-c------cccccchhhh
Confidence 00000000 0000111111111100000000011112334555555555443211 0 0112234556
Q ss_pred EEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCcccc
Q 038494 822 SLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLG 901 (1209)
Q Consensus 822 ~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 901 (1209)
.|.+.++. +..+ +. ..++.|+.+.+..+..- ..+. ...+++|+.|+++.+.-......
T Consensus 332 ~L~l~~~~-~~~~-----~~-~~l~~L~~l~l~~n~~~-~~~~---~~~l~~L~~L~ls~n~l~~~~~~----------- 389 (635)
T 4g8a_A 332 HLELVNCK-FGQF-----PT-LKLKSLKRLTFTSNKGG-NAFS---EVDLPSLEFLDLSRNGLSFKGCC----------- 389 (635)
T ss_dssp EEEEESCE-ESSC-----CC-CBCTTCCEEEEESCCSC-CBCC---CCBCTTCCEEECCSSCCBEEEEC-----------
T ss_pred hhhccccc-ccCc-----Cc-ccchhhhhcccccccCC-CCcc---cccccccccchhhcccccccccc-----------
Confidence 66655532 2211 11 23555666665554322 1111 12355666666554321110000
Q ss_pred ccccccCCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcce
Q 038494 902 FNEIIADDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLER 981 (1209)
Q Consensus 902 ~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~ 981 (1209)
........+|+.+++..+..... ......+++|+.+.+..+....... ......+++++.
T Consensus 390 ----------~~~~~~~~~L~~L~~~~~~~~~~---------~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~l~~l~~ 449 (635)
T 4g8a_A 390 ----------SQSDFGTISLKYLDLSFNGVITM---------SSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIY 449 (635)
T ss_dssp ----------CHHHHSCSCCCEEECCSCSEEEE---------CSCCTTCTTCCEEECTTSEEESTTS-SCTTTTCTTCCE
T ss_pred ----------ccchhhhhhhhhhhccccccccc---------cccccccccccchhhhhcccccccc-cccccccccccc
Confidence 00012234555555554432211 0112235566666665554333322 222234666777
Q ss_pred EeeccCCCccccccCccccCCCcccccccccccccccccccccchhhhhh---hhhhccccccceEEeeccCCceeeccC
Q 038494 982 VSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKY---YKEMIGFRDIWYLQLSHFPRLKEIWHG 1058 (1209)
Q Consensus 982 L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~~L~~~~~~ 1058 (1209)
++++.+. +... +..... .+++|+.|++++|.... ...+..+++|+.|+++++ +++.+...
T Consensus 450 l~ls~n~-l~~~---------~~~~~~------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~ 512 (635)
T 4g8a_A 450 LDISHTH-TRVA---------FNGIFN------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 512 (635)
T ss_dssp EECTTSC-CEEC---------CTTTTT------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT
T ss_pred ccccccc-cccc---------cccccc------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChH
Confidence 7776653 2211 111111 36677777777764321 223456788888888884 56666443
Q ss_pred CCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhhhhhcccccccccCCCccc-ccccccccccc
Q 038494 1059 QALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMF-PKLSNLRLIDL 1137 (1209)
Q Consensus 1059 ~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l-~~L~~L~i~~c 1137 (1209)
. +..+++|++|+++++ ++.. ++...+.++++|+.|++++|. |+.+++ ..+..+ ++|+.|++.+.
T Consensus 513 ~---f~~l~~L~~L~Ls~N-~l~~-l~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 513 A---FNSLSSLQVLNMSHN-NFFS-LDTFPYKCLNSLQVLDYSLNH-IMTSKK---------QELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp T---TTTCTTCCEEECTTS-CCCB-CCCGGGTTCTTCCEEECTTSC-CCBCCS---------SCTTCCCTTCCEEECTTC
T ss_pred H---HcCCCCCCEEECCCC-cCCC-CChhHHhCCCCCCEEECCCCc-CCCCCH---------HHHHhhhCcCCEEEeeCC
Confidence 3 667788888888775 5555 344557788888888888887 665533 223344 67888888763
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.9e-23 Score=258.12 Aligned_cols=131 Identities=13% Similarity=0.082 Sum_probs=72.6
Q ss_pred ccccccccchhhhhhhh-hhc--cccccceEEeeccCCceeeccCCCCCcccCCCccEEEEecC-----CCCccccchhh
Q 038494 1017 HHWEGNNLNSIMQKYYK-EMI--GFRDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDC-----TNMSSAIPANL 1088 (1209)
Q Consensus 1017 ~~L~~L~l~~~~~~~~~-~~~--~~~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c-----~~l~~~~~~~~ 1088 (1209)
++|+.|++++|.....+ .+. .+++|+.|+++++ .++.++ ..+..+++|+.|+++++ +.+...+|..
T Consensus 488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip----~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~- 561 (636)
T 4eco_A 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFP----TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG- 561 (636)
T ss_dssp GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCC----CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-
T ss_pred CCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcC----hhhhcCCCCCEEECCCCcccccCcccccChHH-
Confidence 36666666665443222 233 5677777777773 444432 22556777888877542 2333345554
Q ss_pred HhhhccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccccCC-------CccCCCCccEEee
Q 038494 1089 LRCLNNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTG-------NIIELPELRYLTI 1161 (1209)
Q Consensus 1089 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~-------~l~~l~~L~~L~i 1161 (1209)
+.++++|+.|++++|. ++.+|.. ..++|+.|++++++ +.+++. .+ ....+...+..+|
T Consensus 562 l~~l~~L~~L~Ls~N~-l~~ip~~------------~~~~L~~L~Ls~N~-l~~~~~-~~~~~~~~~~~~~l~~~~~~~i 626 (636)
T 4eco_A 562 ITLCPSLTQLQIGSND-IRKVNEK------------ITPNISVLDIKDNP-NISIDL-SYVCPYIEAGMYMLFYDKTQDI 626 (636)
T ss_dssp GGGCSSCCEEECCSSC-CCBCCSC------------CCTTCCEEECCSCT-TCEEEC-TTTHHHHHTTCCEEECCTTSEE
T ss_pred HhcCCCCCEEECCCCc-CCccCHh------------HhCcCCEEECcCCC-CccccH-HhcchhhhcccceeecCCcccc
Confidence 4667888888888877 5555321 22678888888743 444331 11 1112233345567
Q ss_pred ecCCCcc
Q 038494 1162 ENCPDME 1168 (1209)
Q Consensus 1162 ~~C~~l~ 1168 (1209)
.+|+.|+
T Consensus 627 ~~C~~L~ 633 (636)
T 4eco_A 627 RGCDALD 633 (636)
T ss_dssp ESCGGGC
T ss_pred CCCcccc
Confidence 7787764
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.90 E-value=1.7e-22 Score=247.27 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=85.5
Q ss_pred ccccccccccchhhhhhh----hhhccccccceEEeeccCCcee-eccCCCCCcccCCCccEEEEecCCCCccccchhhH
Q 038494 1015 ELHHWEGNNLNSIMQKYY----KEMIGFRDIWYLQLSHFPRLKE-IWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLL 1089 (1209)
Q Consensus 1015 ~l~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~L~~-~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~ 1089 (1209)
.+++|+.|++++|..... ..+..+++|+.|+++++. ++. ++.. .+..+++|++|++++|. +....|.
T Consensus 375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~~--- 446 (562)
T 3a79_B 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR---TCAWAESILVLNLSSNM-LTGSVFR--- 446 (562)
T ss_dssp SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC---CCCCCTTCCEEECCSSC-CCGGGGS---
T ss_pred ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccChh---hhcCcccCCEEECCCCC-CCcchhh---
Confidence 366777777776654321 224567888888888743 443 4332 25567888999888764 3332332
Q ss_pred hhh-ccCcEEEEccCCchhhhhhcccccccccCCCcccccccccccccccccccccccCCCccCCCCccEEeeecCC
Q 038494 1090 RCL-NNLRRLEVRNCDSLEEVLRLEELNADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIELPELRYLTIENCP 1165 (1209)
Q Consensus 1090 ~~l-~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l~~L~~L~i~~C~ 1165 (1209)
.+ ++|+.|++++|. ++.+|... + .+++|+.|++++ ++++.+|. +.+..+++|+.|+++++|
T Consensus 447 -~l~~~L~~L~L~~N~-l~~ip~~~---------~-~l~~L~~L~L~~-N~l~~l~~--~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 447 -CLPPKVKVLDLHNNR-IMSIPKDV---------T-HLQALQELNVAS-NQLKSVPD--GVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -SCCTTCSEEECCSSC-CCCCCTTT---------T-SSCCCSEEECCS-SCCCCCCT--TSTTTCTTCCCEECCSCC
T ss_pred -hhcCcCCEEECCCCc-CcccChhh---------c-CCCCCCEEECCC-CCCCCCCH--HHHhcCCCCCEEEecCCC
Confidence 33 688899998886 77664322 2 678889999888 57777775 347788888888888865
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=6.5e-23 Score=256.62 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=47.0
Q ss_pred cccCCc-ccccCCCCCCEEEccCCCCCc------------------cchhcc--CCCCCCEEeccCCCCCcccCchhhcC
Q 038494 600 CQLEDV-AAIGQLKKLEILSFRYSDIKQ------------------LPLEIG--QLAQLQLLDLSNCSSLVVIAPNVISK 658 (1209)
Q Consensus 600 ~~l~~l-~~i~~L~~L~~L~l~~~~~~~------------------lp~~i~--~L~~L~~L~l~~~~~l~~~~~~~l~~ 658 (1209)
|.++.+ ..++++++|++|++++|.++. +|..++ ++++|++|++++|.....+|. .+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhC
Confidence 344445 567777777777777777776 777766 777777777777554444543 3777
Q ss_pred CCCCcEEECCCC
Q 038494 659 FSRLEELYMGDS 670 (1209)
Q Consensus 659 L~~L~~L~l~~~ 670 (1209)
+++|++|++++|
T Consensus 514 L~~L~~L~Ls~N 525 (876)
T 4ecn_A 514 LPELQSLNIACN 525 (876)
T ss_dssp CSSCCEEECTTC
T ss_pred CCCCCEEECcCC
Confidence 777777777665
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=2.7e-22 Score=245.49 Aligned_cols=461 Identities=18% Similarity=0.171 Sum_probs=240.5
Q ss_pred eEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccC
Q 038494 521 AIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDW 599 (1209)
Q Consensus 521 ~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~ 599 (1209)
.+++.++++.+..+|.... +++++|++++| .+..++...|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N--~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQN--SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSS--CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCC--CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3778888888888876543 78888888887 46667766678888888888888888766 56788888888888888
Q ss_pred cccCCcccccCCCCCCEEEccCCCCCccc--hhccCCCCCCEEeccCCCCCcccCchhhcCCCCC--cEEECCCCCCccc
Q 038494 600 CQLEDVAAIGQLKKLEILSFRYSDIKQLP--LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRL--EELYMGDSFPQWD 675 (1209)
Q Consensus 600 ~~l~~l~~i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L--~~L~l~~~~~~~~ 675 (1209)
|.++.++.. .+++|++|++++|.++.+| ..++++++|++|++++ +.+.... +..+++| ++|+++++....
T Consensus 110 N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l~~- 183 (562)
T 3a79_B 110 NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSYHI- 183 (562)
T ss_dssp SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSCCC-
T ss_pred CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeecccccc-
Confidence 888777333 7888888888888877654 6788888888888887 4444322 3444444 777776653200
Q ss_pred cccCCCccchhhhCCCCCCCEE--EeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhh
Q 038494 676 KVEGGSNASLAELKGLSKLTTL--EIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLE 753 (1209)
Q Consensus 676 ~~~~~~~~~l~~L~~l~~L~~L--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~ 753 (1209)
.... ...+..+.. +.+ +++.+..........+.++.
T Consensus 184 --~~~~---~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~------------------------------------ 221 (562)
T 3a79_B 184 --KGGE---TESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALG------------------------------------ 221 (562)
T ss_dssp --CSSS---CCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEE------------------------------------
T ss_pred --cccC---cccccccCc-ceEEEEecCccchhhhhhhcccccc------------------------------------
Confidence 0011 112222211 222 33332222111111111111
Q ss_pred HHHHHHHhcccceeeecccc-ccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccc
Q 038494 754 NYGMKMLLKLTEDIRLEELT-GVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLE 832 (1209)
Q Consensus 754 ~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 832 (1209)
+|+.+++.... .+......+..+..+++|+.|.+.++.-..... .........++|+.|+++++. +.
T Consensus 222 ---------~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~--~~~~~~~~~~~L~~L~l~~n~-l~ 289 (562)
T 3a79_B 222 ---------HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS--VKLFQFFWPRPVEYLNIYNLT-IT 289 (562)
T ss_dssp ---------EEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHH--HHHHHHHTTSSEEEEEEEEEE-EC
T ss_pred ---------eEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHH--HHHHHhhhcccccEEEEeccE-ee
Confidence 12222221110 000001111112345556666665543110000 000011123467777776642 22
Q ss_pred -hhccccccc-ccccCCccEEEEecCCCccccccHHHHhh---cccccEEEEecccccccccccCCCCCCcccccccccc
Q 038494 833 -AICHSQLRE-DQFFSNLKIIEVESCDKLKHLFSFSIARN---LLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIA 907 (1209)
Q Consensus 833 -~~~~~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~~---l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 907 (1209)
.++...+.. .+.++.|+.+++..+. + .+|.. .+.. ..+|+.|++++|.-. ...
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~-~-~~p~~-~~~~~~~~~~L~~L~l~~n~~~-~~~------------------ 347 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQV-F-LFSKE-ALYSVFAEMNIKMLSISDTPFI-HMV------------------ 347 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECC-C-SSCHH-HHHHHHHTCCCSEEEEESSCCC-CCC------------------
T ss_pred ccccchhhhcccccchheehhhcccce-e-ecChh-hhhhhhccCcceEEEccCCCcc-ccc------------------
Confidence 221111000 0223334444444432 2 33321 2222 255888888776321 100
Q ss_pred CCCCCCCccCccccceEeeccccchhhhhccccccccccccccccchhhhhccCCccccccc-ccccccCCCcceEeecc
Q 038494 908 DDDTAPKVGIPSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCL-ENYTLEFPSLERVSMIR 986 (1209)
Q Consensus 908 ~~~~~~~l~~~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~-~~~~~~~~~L~~L~i~~ 986 (1209)
....+++|+.|++++|..-..++. ....+++|+.|+++++. ++.++. ......+++|+.|++++
T Consensus 348 ------~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 348 ------CPPSPSSFTFLNFTQNVFTDSVFQ--------GCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp ------CCSSCCCCCEEECCSSCCCTTTTT--------TCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ------CccCCCCceEEECCCCccccchhh--------hhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCC
Confidence 013456778888877753322221 23457778888887753 443321 11123578888888888
Q ss_pred CCCccccccCccccCCCcccccccccccccccccccccchhhhhhhhhhccc-cccceEEeeccCCceeeccCCCCCccc
Q 038494 987 CPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQKYYKEMIGF-RDIWYLQLSHFPRLKEIWHGQALPVSF 1065 (1209)
Q Consensus 987 C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~ 1065 (1209)
|.--. .+|...+. .+++|+.|++++|...... ...+ ++|+.|+++++ .++.++.. +..
T Consensus 413 N~l~~---------~~~~~~~~------~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N-~l~~ip~~----~~~ 471 (562)
T 3a79_B 413 NSLNS---------HAYDRTCA------WAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNN-RIMSIPKD----VTH 471 (562)
T ss_dssp SCCBS---------CCSSCCCC------CCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSS-CCCCCCTT----TTS
T ss_pred CcCCC---------ccChhhhc------CcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCC-cCcccChh----hcC
Confidence 75322 13333222 4677777777776542111 1122 56777777763 55554332 235
Q ss_pred CCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCC
Q 038494 1066 FNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCD 1104 (1209)
Q Consensus 1066 l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~ 1104 (1209)
+++|++|+++++ .+.. +|...+..+++|+.|++++++
T Consensus 472 l~~L~~L~L~~N-~l~~-l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 472 LQALQELNVASN-QLKS-VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCCCSEEECCSS-CCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCCEEECCCC-CCCC-CCHHHHhcCCCCCEEEecCCC
Confidence 667777777664 4443 454445667777777777665
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=7.5e-22 Score=239.55 Aligned_cols=137 Identities=19% Similarity=0.287 Sum_probs=113.6
Q ss_pred hcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcE
Q 038494 517 IQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQT 594 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 594 (1209)
.+.+++++.++++.+..++. ...+++|++|++++| .+..+++..|.++++|++|++++|.++.+|.. .+++|++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHN--RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKH 94 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS--CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSE
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCC--ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccE
Confidence 34789999999999988864 347999999999998 46677677789999999999999999999987 8999999
Q ss_pred EeccCcccCCc---ccccCCCCCCEEEccCCCCCccchhccCCCCC--CEEeccCCCCC--cccCchhhcCCC
Q 038494 595 LCLDWCQLEDV---AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQL--QLLDLSNCSSL--VVIAPNVISKFS 660 (1209)
Q Consensus 595 L~l~~~~l~~l---~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L--~~L~l~~~~~l--~~~~~~~l~~L~ 660 (1209)
|++++|.++.+ ..++++++|++|++++|.+.. ..+..+++| ++|++++|. + ....+..+..+.
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~-l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGE-TYGEKEDPEGLQDFN 164 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECT-TTTSSCCTTTTTTCC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccc-ccccccccccccccc
Confidence 99999998863 689999999999999998876 356778888 999999854 4 333333355554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=6.3e-21 Score=227.29 Aligned_cols=100 Identities=22% Similarity=0.388 Sum_probs=54.1
Q ss_pred cCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEecc
Q 038494 564 EGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLS 643 (1209)
Q Consensus 564 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1209)
..+++|++|++++|.++.+|. ++++++|++|++++|.+..+..++++++|++|++++|.++.+|. +.++++|++|+++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 445555555555555555554 55555555555555555555335555555555555555555543 5555555555555
Q ss_pred CCCCCcccCchhhcCCCCCcEEECC
Q 038494 644 NCSSLVVIAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 644 ~~~~l~~~~~~~l~~L~~L~~L~l~ 668 (1209)
+| .+..++. ++++++|++|+++
T Consensus 143 ~n-~l~~~~~--~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 143 SN-TISDISA--LSGLTSLQQLSFG 164 (466)
T ss_dssp EE-EECCCGG--GTTCTTCSEEEEE
T ss_pred CC-ccCCChh--hccCCcccEeecC
Confidence 52 3333321 4555555555543
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=7.2e-21 Score=224.39 Aligned_cols=118 Identities=22% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEc
Q 038494 540 CPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSF 619 (1209)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l 619 (1209)
+++|++|+++++. +..++ .+..+++|++|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|++
T Consensus 41 l~~L~~L~Ls~n~--l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSS--ITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSC--CCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCC--cccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 4556666665552 33333 2456666666666666666664 666666667776666666553 666666677777
Q ss_pred cCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 620 RYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 620 ~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
++|.++.+| ++++++|++|++++ +.++.++ ++++++|++|++++|
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTC
T ss_pred CCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCC
Confidence 666666654 56666667776666 3454442 556666666666654
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=3.7e-20 Score=220.57 Aligned_cols=342 Identities=14% Similarity=0.164 Sum_probs=232.2
Q ss_pred cCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEec
Q 038494 518 QKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCL 597 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l 597 (1209)
...++.+.+.++.+..++....+++|++|++++| .+..++. +.++++|++|++++|.+..++. ++++++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n--~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN--QLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCC--ccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 4579999999999999988778999999999998 4555655 7899999999999999999887 999999999999
Q ss_pred cCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccc
Q 038494 598 DWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKV 677 (1209)
Q Consensus 598 ~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 677 (1209)
++|.++.+..+.++++|++|++++|.+..+| .++++++|++|++++ .+...++ +.++++|++|+++++...
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS---- 190 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC----
Confidence 9999999977999999999999999988886 489999999999974 4444443 889999999999887421
Q ss_pred cCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHH
Q 038494 678 EGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGM 757 (1209)
Q Consensus 678 ~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 757 (1209)
.+..+..+++|+.|+++.+.....+....+.
T Consensus 191 ------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~------------------------------------------- 221 (466)
T 1o6v_A 191 ------DISVLAKLTNLESLIATNNQISDITPLGILT------------------------------------------- 221 (466)
T ss_dssp ------CCGGGGGCTTCSEEECCSSCCCCCGGGGGCT-------------------------------------------
T ss_pred ------CChhhccCCCCCEEEecCCcccccccccccC-------------------------------------------
Confidence 1234778899999999887765443222223
Q ss_pred HHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhccc
Q 038494 758 KMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHS 837 (1209)
Q Consensus 758 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 837 (1209)
+|+.|++.++.. .. ++.+..+++|++|+++++.... + .....+++|+.|+++++ .+..+..
T Consensus 222 -----~L~~L~l~~n~l-~~----~~~l~~l~~L~~L~l~~n~l~~-~------~~~~~l~~L~~L~l~~n-~l~~~~~- 282 (466)
T 1o6v_A 222 -----NLDELSLNGNQL-KD----IGTLASLTNLTDLDLANNQISN-L------APLSGLTKLTELKLGAN-QISNISP- 282 (466)
T ss_dssp -----TCCEEECCSSCC-CC----CGGGGGCTTCSEEECCSSCCCC-C------GGGTTCTTCSEEECCSS-CCCCCGG-
T ss_pred -----CCCEEECCCCCc-cc----chhhhcCCCCCEEECCCCcccc-c------hhhhcCCCCCEEECCCC-ccCcccc-
Confidence 333344433211 11 1123556777777777764211 1 11344677777777763 3443321
Q ss_pred ccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccC
Q 038494 838 QLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGI 917 (1209)
Q Consensus 838 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 917 (1209)
...+++|+.|++++| .++.++. +..+++|+.|++++|. +.... .+..
T Consensus 283 ----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~------------------------~~~~ 329 (466)
T 1o6v_A 283 ----LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDIS------------------------PVSS 329 (466)
T ss_dssp ----GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCG------------------------GGGG
T ss_pred ----ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCch------------------------hhcc
Confidence 245777777777776 3444433 4567777777777663 22111 1244
Q ss_pred ccccceEeeccccchhhhhccccccccccccccccchhhhhccCCcccccccccccccCCCcceEeeccCC
Q 038494 918 PSSLVNLKVSKCQKIEEIVGHVGEEVKENRIAFSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCP 988 (1209)
Q Consensus 918 ~~sL~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~ 988 (1209)
+++|+.|++++|.. +.+ .....+++|+.|++++|. +..+.+ ...+++|+.|++++|+
T Consensus 330 l~~L~~L~l~~n~l-~~~---------~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 330 LTKLQRLFFYNNKV-SDV---------SSLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CTTCCEEECCSSCC-CCC---------GGGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE
T ss_pred CccCCEeECCCCcc-CCc---------hhhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc
Confidence 56677777766632 211 123346667777776664 333322 2346777777777764
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=5.9e-20 Score=210.19 Aligned_cols=148 Identities=21% Similarity=0.359 Sum_probs=97.4
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEE
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILS 618 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~ 618 (1209)
.+++|++|++.++. +..++. +..+++|++|++++|.++.+|. +..+++|++|++++|.++.++.+.++++|++|+
T Consensus 42 ~l~~L~~L~l~~~~--i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEK--VASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSC--CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred hcccccEEEEeCCc--cccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEE
Confidence 45666666666652 333432 4667777777777777777766 777777777777777777776677777777777
Q ss_pred ccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEE
Q 038494 619 FRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLE 698 (1209)
Q Consensus 619 l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~ 698 (1209)
+++|.+..+|. +.++++|++|++++|......+. +..+++|++|+++++... .+..+..+++|+.|+
T Consensus 117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~----------~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK----------DVTPIANLTDLYSLS 183 (347)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC----------CCGGGGGCTTCSEEE
T ss_pred CcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC----------CchhhccCCCCCEEE
Confidence 77777777665 67777777777777655554433 677777777777665321 111255666777777
Q ss_pred eeccCC
Q 038494 699 IQVQDA 704 (1209)
Q Consensus 699 l~~~~~ 704 (1209)
++.+..
T Consensus 184 l~~n~l 189 (347)
T 4fmz_A 184 LNYNQI 189 (347)
T ss_dssp CTTSCC
T ss_pred ccCCcc
Confidence 665544
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.9e-19 Score=212.29 Aligned_cols=165 Identities=15% Similarity=0.154 Sum_probs=138.2
Q ss_pred hcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 517 IQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
...+++++.++++.+..+|....+++|++|++++|. +..++ +..+++|++|++++|.++.+| ++++++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~--l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN--ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC--CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCc--CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 356899999999999988866689999999999984 44454 689999999999999999886 89999999999
Q ss_pred ccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 597 LDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 597 l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
+++|.++.++ ++++++|++|++++|.++.+| ++++++|++|++++|..+..++ ++.+++|++|+++++....
T Consensus 113 L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-- 184 (457)
T 3bz5_A 113 CDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-- 184 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--
T ss_pred CCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--
Confidence 9999998875 899999999999999999885 8899999999999976666652 7789999999998764311
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCCC
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDAQ 705 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~~ 705 (1209)
+ .+..+++|+.|+++.+.+.
T Consensus 185 --------l-~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 185 --------L-DVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp --------C-CCTTCTTCCEEECCSSCCS
T ss_pred --------e-ccccCCCCCEEECcCCcCC
Confidence 1 1566778888888766543
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.7e-20 Score=221.08 Aligned_cols=165 Identities=18% Similarity=0.155 Sum_probs=73.7
Q ss_pred cccchhhhhccCCcccccccccccccCCCcceEeeccCCCccccccCccccCCCcccccccccccccccccccccchhhh
Q 038494 950 FSELKVLILNYLSRLTSFCLENYTLEFPSLERVSMIRCPNMKTFSQGILSIPKPCKVQVTEKEEGELHHWEGNNLNSIMQ 1029 (1209)
Q Consensus 950 ~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~p~~~~~~~~~~~~l~~L~~L~l~~~~~ 1029 (1209)
+++|+.|+++++. +..++. .+++|+.|++++|. ++.++. ..++|+.|++++|..
T Consensus 256 ~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N~-l~~l~~-------------------~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 256 PPSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSENI-FSGLSE-------------------LPPNLYYLNASSNEI 309 (454)
T ss_dssp CTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSEESC-------------------CCTTCCEEECCSSCC
T ss_pred ccccCEEECCCCc-ccccCc-----ccCcCCEEECcCCc-cCcccC-------------------cCCcCCEEECcCCcC
Confidence 3567777776654 333322 24789999998874 443221 125778888887754
Q ss_pred hhhhhhccc-cccceEEeeccCCceeeccCCCCCcccCCCccEEEEecCCCCccccchhhHhhhccCcEEEEccCCchhh
Q 038494 1030 KYYKEMIGF-RDIWYLQLSHFPRLKEIWHGQALPVSFFNNLARLVVDDCTNMSSAIPANLLRCLNNLRRLEVRNCDSLEE 1108 (1209)
Q Consensus 1030 ~~~~~~~~~-~~L~~L~l~~~~~L~~~~~~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 1108 (1209)
.. +..+ ++|+.|++++ +.++.++. .+++|+.|++++| .+.. +|. .+++|+.|++++|. ++.
T Consensus 310 ~~---i~~~~~~L~~L~Ls~-N~l~~lp~-------~~~~L~~L~L~~N-~l~~-lp~----~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 310 RS---LCDLPPSLEELNVSN-NKLIELPA-------LPPRLERLIASFN-HLAE-VPE----LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp SE---ECCCCTTCCEEECCS-SCCSCCCC-------CCTTCCEEECCSS-CCSC-CCC----CCTTCCEEECCSSC-CSS
T ss_pred Cc---ccCCcCcCCEEECCC-Cccccccc-------cCCcCCEEECCCC-cccc-ccc----hhhhccEEECCCCC-CCc
Confidence 32 2223 5888888887 45555422 1478888888776 4554 454 36788888888887 555
Q ss_pred hhhccc-c-----cccccCCCcccccccccccccccccccccccCCCccCCCCccEEeeecCC
Q 038494 1109 VLRLEE-L-----NADKEHIGPMFPKLSNLRLIDLPKLKRFCNFTGNIIELPELRYLTIENCP 1165 (1209)
Q Consensus 1109 l~~~~~-~-----~~~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~l~~l~~L~~L~i~~C~ 1165 (1209)
++.... . +......+..+++|+.|++++ +.++.++.+ .++|+.|.+.+|.
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~-N~l~~~~~i------P~sl~~L~~~~~~ 427 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET-NPLREFPDI------PESVEDLRMNSER 427 (454)
T ss_dssp CCCCCTTCCEEECCC------------------------------------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCC-CcCCccccc------hhhHhheeCcCcc
Confidence 322110 0 000011111235667777766 445544331 2345556665554
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=3.6e-19 Score=212.11 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=70.9
Q ss_pred EEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc-cc-cccccCCCCCcEEeccCcc
Q 038494 524 ISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS-SL-SSSLGHLINLQTLCLDWCQ 601 (1209)
Q Consensus 524 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~l-p~~i~~l~~L~~L~l~~~~ 601 (1209)
+...+..+..+|. -.+++++|++++| .+..+++..|.++++|++|++++|.+. .+ |..+.++++|++|++++|.
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLN--SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSS--CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCC--ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 4444445555554 1255566666555 234444444555566666666655554 33 3345555555555555555
Q ss_pred cCCc--ccccCCCCCCEEEccCCCCCc-cchh--ccCCCCCCEEeccCCCCCcccCchh-hcCCCCCcEEECCC
Q 038494 602 LEDV--AAIGQLKKLEILSFRYSDIKQ-LPLE--IGQLAQLQLLDLSNCSSLVVIAPNV-ISKFSRLEELYMGD 669 (1209)
Q Consensus 602 l~~l--~~i~~L~~L~~L~l~~~~~~~-lp~~--i~~L~~L~~L~l~~~~~l~~~~~~~-l~~L~~L~~L~l~~ 669 (1209)
+..+ ..++++++|++|++++|.++. .|.. +.++++|++|++++ +.+....+.. +.++++|++|++++
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCcccEEeCCC
Confidence 5444 345555555555555555543 2222 55555555555555 2333332222 44455555555444
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=3.9e-19 Score=211.84 Aligned_cols=186 Identities=22% Similarity=0.268 Sum_probs=141.7
Q ss_pred hcCCeEEEEccCCCCccCCC-c-CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCc
Q 038494 517 IQKGAIAISIPYGDIQELPE-R-LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQ 593 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~ 593 (1209)
.+.+++++.++++.+..++. . ..+++|++|++.++. ....++...|.++++|++|++++|.++.+ |..++++++|+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 106 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLE 106 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhccCcccCC
Confidence 56789999999999987743 3 479999999999985 33467777789999999999999999876 77899999999
Q ss_pred EEeccCcccCC--ccc--ccCCCCCCEEEccCCCCCcc-chh-ccCCCCCCEEeccCCCCCcccCchhhcCC--CCCcEE
Q 038494 594 TLCLDWCQLED--VAA--IGQLKKLEILSFRYSDIKQL-PLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKF--SRLEEL 665 (1209)
Q Consensus 594 ~L~l~~~~l~~--l~~--i~~L~~L~~L~l~~~~~~~l-p~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L--~~L~~L 665 (1209)
+|++++|.++. +.. ++++++|++|++++|.+..+ |.. +.++++|++|++++ +.+...++..+.++ .+|+.|
T Consensus 107 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 107 VLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp EEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSGGGTTCEEEEE
T ss_pred EEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhhhcccccccccc
Confidence 99999999987 333 89999999999999999977 544 89999999999999 56666665556655 688899
Q ss_pred ECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 666 YMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 666 ~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
+++++.................+..+++|+.|+++.+..
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 988764321110000001112234556777888776654
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.8e-18 Score=197.81 Aligned_cols=303 Identities=14% Similarity=0.139 Sum_probs=226.0
Q ss_pred hcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 517 IQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
..++++++.+.++.+..++....+++|++|++.+| .+..++. |.++++|++|++++|.++.+| .+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n--~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN--QITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCC--ccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 45689999999999999887778999999999998 4555655 789999999999999999986 599999999999
Q ss_pred ccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 597 LDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 597 l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
+++|.+..+..+..+++|++|++++|.....+..+.++++|++|++++| .+...++ +..+++|++|++++|...
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~--- 190 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE--- 190 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC---
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc---
Confidence 9999999986699999999999999955544556999999999999994 5666554 889999999999887421
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHH
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYG 756 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 756 (1209)
.+..+..+++|+.|+++.+.....+.....
T Consensus 191 -------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------- 220 (347)
T 4fmz_A 191 -------DISPLASLTSLHYFTAYVNQITDITPVANM------------------------------------------- 220 (347)
T ss_dssp -------CCGGGGGCTTCCEEECCSSCCCCCGGGGGC-------------------------------------------
T ss_pred -------ccccccCCCccceeecccCCCCCCchhhcC-------------------------------------------
Confidence 122377888999999988766544321122
Q ss_pred HHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcc
Q 038494 757 MKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICH 836 (1209)
Q Consensus 757 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 836 (1209)
++|+.|++.++.. .. ++++..+++|++|+++++.. ..+ .....+++|+.|+++++ .++.++
T Consensus 221 -----~~L~~L~l~~n~l-~~----~~~~~~l~~L~~L~l~~n~l-~~~------~~~~~l~~L~~L~l~~n-~l~~~~- 281 (347)
T 4fmz_A 221 -----TRLNSLKIGNNKI-TD----LSPLANLSQLTWLEIGTNQI-SDI------NAVKDLTKLKMLNVGSN-QISDIS- 281 (347)
T ss_dssp -----TTCCEEECCSSCC-CC----CGGGTTCTTCCEEECCSSCC-CCC------GGGTTCTTCCEEECCSS-CCCCCG-
T ss_pred -----CcCCEEEccCCcc-CC----CcchhcCCCCCEEECCCCcc-CCC------hhHhcCCCcCEEEccCC-ccCCCh-
Confidence 3445555544321 11 11256788999999988752 222 12456889999999885 565542
Q ss_pred cccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCcc
Q 038494 837 SQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVG 916 (1209)
Q Consensus 837 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 916 (1209)
....+++|+.|++++|+ ++..+. ..+..+++|+.|++++|+ +.... ++.
T Consensus 282 ----~~~~l~~L~~L~L~~n~-l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~------------------------~~~ 330 (347)
T 4fmz_A 282 ----VLNNLSQLNSLFLNNNQ-LGNEDM-EVIGGLTNLTTLFLSQNH-ITDIR------------------------PLA 330 (347)
T ss_dssp ----GGGGCTTCSEEECCSSC-CCGGGH-HHHHTCTTCSEEECCSSS-CCCCG------------------------GGG
T ss_pred ----hhcCCCCCCEEECcCCc-CCCcCh-hHhhccccCCEEEccCCc-ccccc------------------------Chh
Confidence 22568999999999984 554443 456789999999999985 33221 135
Q ss_pred CccccceEeecccc
Q 038494 917 IPSSLVNLKVSKCQ 930 (1209)
Q Consensus 917 ~~~sL~~L~l~~c~ 930 (1209)
.+++|+.|++++|+
T Consensus 331 ~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 SLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEESSSCC-
T ss_pred hhhccceeehhhhc
Confidence 56778888877764
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=1.7e-19 Score=212.38 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=70.4
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc-cccccccCCCCC-------------cEEeccCcccCC
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS-SLSSSLGHLINL-------------QTLCLDWCQLED 604 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L-------------~~L~l~~~~l~~ 604 (1209)
..++|++|.++++. ...+|.. ++++++|++|++++|.+. .+|.+++++.+| ++|++++|.++.
T Consensus 9 ~~~~L~~L~l~~n~--l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN--LTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred ccccchhhhcccCc--hhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 34667777776663 3556654 477777777777777776 677777777664 666666666655
Q ss_pred cccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccc
Q 038494 605 VAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNAS 684 (1209)
Q Consensus 605 l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 684 (1209)
++.+ .++|++|++++|.++.+|.. +.+|++|++++ +.++.++.. .++|++|++++|... .
T Consensus 86 lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~-n~l~~l~~~----~~~L~~L~L~~n~l~---------~- 145 (454)
T 1jl5_A 86 LPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDN-NNLKALSDL----PPLLEYLGVSNNQLE---------K- 145 (454)
T ss_dssp CCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCCSC----CTTCCEEECCSSCCS---------S-
T ss_pred CCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCC-CccCcccCC----CCCCCEEECcCCCCC---------C-
Confidence 5332 35666666666666666542 35666666666 344443321 146666666654321 0
Q ss_pred hhhhCCCCCCCEEEeeccCCCC
Q 038494 685 LAELKGLSKLTTLEIQVQDAQM 706 (1209)
Q Consensus 685 l~~L~~l~~L~~L~l~~~~~~~ 706 (1209)
+..+..+++|+.|+++.+....
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCSC
T ss_pred CcccCCCCCCCEEECCCCcCcc
Confidence 1135566666666666655443
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.81 E-value=1.5e-18 Score=201.90 Aligned_cols=307 Identities=13% Similarity=0.155 Sum_probs=218.0
Q ss_pred cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCC
Q 038494 537 RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKK 613 (1209)
Q Consensus 537 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~ 613 (1209)
...+++++.|++.++ .+..+|..+|.++++|++|++++|.++.+|. .+..+++|++|++++|.+..+ ..++++++
T Consensus 41 ~~~l~~l~~l~l~~~--~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 41 DITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp SGGGCCCSEEEEESC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCCceEEEecCC--chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 345788899988877 5777888888889999999999998887764 788899999999999988877 55788999
Q ss_pred CCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCC
Q 038494 614 LEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLS 692 (1209)
Q Consensus 614 L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~ 692 (1209)
|++|++++|.++.+|.. +.++++|++|++++ +.+..+++..++++++|++|+++++.... ..+..++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~l~ 186 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIP 186 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCSB-----------CCGGGCT
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCCc-----------ccccccc
Confidence 99999999988888877 48889999999988 56777777668888999999988764311 0245667
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccc
Q 038494 693 KLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEEL 772 (1209)
Q Consensus 693 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 772 (1209)
+|+.|+++.+....++ ....|+.|.+....... +.. ...++|+.|++.+.
T Consensus 187 ~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~-------------~~~--------------~~~~~L~~L~l~~n 236 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLA---IPIAVEELDASHNSINV-------------VRG--------------PVNVELTILKLQHN 236 (390)
T ss_dssp TCSEEECCSSCCSEEE---CCSSCSEEECCSSCCCE-------------EEC--------------CCCSSCCEEECCSS
T ss_pred ccceeecccccccccC---CCCcceEEECCCCeeee-------------ccc--------------cccccccEEECCCC
Confidence 8888888877654332 22345555543221100 000 01246777777664
Q ss_pred cccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEE
Q 038494 773 TGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIE 852 (1209)
Q Consensus 773 ~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 852 (1209)
... . .+.+..+++|++|+++++......+ .....+++|+.|++++ ++++.++... ..+|+|+.|+
T Consensus 237 ~l~-~----~~~l~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~-n~l~~~~~~~----~~l~~L~~L~ 301 (390)
T 3o6n_A 237 NLT-D----TAWLLNYPGLVEVDLSYNELEKIMY-----HPFVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLD 301 (390)
T ss_dssp CCC-C----CGGGGGCTTCSEEECCSSCCCEEES-----GGGTTCSSCCEEECCS-SCCCEEECSS----SCCTTCCEEE
T ss_pred CCc-c----cHHHcCCCCccEEECCCCcCCCcCh-----hHccccccCCEEECCC-CcCcccCccc----CCCCCCCEEE
Confidence 322 1 1335788999999999986332211 1234589999999998 4666653321 4589999999
Q ss_pred EecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEeeccccc
Q 038494 853 VESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQK 931 (1209)
Q Consensus 853 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~ 931 (1209)
+++| .++.+|. .+..+++|+.|++++|. +..+. +..+++|+.|++++++-
T Consensus 302 L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~-------------------------~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 302 LSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLK-------------------------LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCC-------------------------CCTTCCCSEEECCSSCE
T ss_pred CCCC-cceecCc--cccccCcCCEEECCCCc-cceeC-------------------------chhhccCCEEEcCCCCc
Confidence 9998 6777765 45679999999999874 32221 24567888899888753
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=9.3e-19 Score=209.66 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=121.1
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCc
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWC 600 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~ 600 (1209)
+.+...+..+..+|... .+++++|++++| .+..++...|.++++|++|+|++|.++.+ |..++++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKN--RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCC--ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34555666677777644 367888888877 46666666678888888888888888765 667888888888888888
Q ss_pred ccCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccc
Q 038494 601 QLEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKV 677 (1209)
Q Consensus 601 ~l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 677 (1209)
.++.+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++ +.+..+++..+.++++|++|++++|...
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCc----
Confidence 88777 3467888888888888877755 45677888888888887 5566666666777888888887765321
Q ss_pred cCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 678 EGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 678 ~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
......+..+++|+.|+++.+.+
T Consensus 166 ----~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 166 ----SIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ----SCCHHHHTTCTTCCEEEEESCCC
T ss_pred ----ccChhHhcccCCCcEEeCCCCcC
Confidence 01123356667777777765543
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=4.4e-18 Score=209.09 Aligned_cols=307 Identities=14% Similarity=0.160 Sum_probs=218.9
Q ss_pred cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCC
Q 038494 537 RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKK 613 (1209)
Q Consensus 537 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~ 613 (1209)
...+++++.|.+.++ ....+|..+|.++++|++|+|++|.++.+|. .|+.+++|++|++++|.+..+ ..++++++
T Consensus 47 ~l~l~~l~~l~l~~~--~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 47 DITLNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp SGGGCCCSEEEESSC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCCceEEEeeCC--CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 345788888888877 5777888888889999999999999887764 788999999999999998877 45788999
Q ss_pred CCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCC
Q 038494 614 LEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLS 692 (1209)
Q Consensus 614 L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~ 692 (1209)
|++|++++|.++.+|.. ++++++|++|++++ +.+..+++..++++++|++|++++|.... ..+..++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----------~~~~~l~ 192 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLIP 192 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTSCCSB-----------CCGGGCT
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCCCCCC-----------cChhhhh
Confidence 99999999988888877 48899999999998 56777777778889999999988764311 0245567
Q ss_pred CCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccc
Q 038494 693 KLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEEL 772 (1209)
Q Consensus 693 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 772 (1209)
+|+.|+++.+....++ ....|+.|.+..+.... +.. ...++|+.|.+.++
T Consensus 193 ~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~-------------~~~--------------~~~~~L~~L~L~~n 242 (597)
T 3oja_B 193 SLFHANVSYNLLSTLA---IPIAVEELDASHNSINV-------------VRG--------------PVNVELTILKLQHN 242 (597)
T ss_dssp TCSEEECCSSCCSEEE---CCTTCSEEECCSSCCCE-------------EEC--------------SCCSCCCEEECCSS
T ss_pred hhhhhhcccCcccccc---CCchhheeeccCCcccc-------------ccc--------------ccCCCCCEEECCCC
Confidence 8888888877554322 22345555543221100 000 01146777777664
Q ss_pred cccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEE
Q 038494 773 TGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIE 852 (1209)
Q Consensus 773 ~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 852 (1209)
.... ...+..+++|+.|+++++......+. ....+++|+.|++++ +.++.++... +.+|+|+.|+
T Consensus 243 ~l~~-----~~~l~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~Ls~-N~l~~l~~~~----~~l~~L~~L~ 307 (597)
T 3oja_B 243 NLTD-----TAWLLNYPGLVEVDLSYNELEKIMYH-----PFVKMQRLERLYISN-NRLVALNLYG----QPIPTLKVLD 307 (597)
T ss_dssp CCCC-----CGGGGGCTTCSEEECCSSCCCEEESG-----GGTTCSSCCEEECTT-SCCCEEECSS----SCCTTCCEEE
T ss_pred CCCC-----ChhhccCCCCCEEECCCCccCCCCHH-----HhcCccCCCEEECCC-CCCCCCCccc----ccCCCCcEEE
Confidence 3221 23367899999999999863322111 234589999999998 4666653321 4589999999
Q ss_pred EecCCCccccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEeeccccc
Q 038494 853 VESCDKLKHLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQK 931 (1209)
Q Consensus 853 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~ 931 (1209)
+++| .++.+|. .+..+++|+.|++++|. +..+ .+..+++|+.|++++|+-
T Consensus 308 Ls~N-~l~~i~~--~~~~l~~L~~L~L~~N~-l~~~-------------------------~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 308 LSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTL-------------------------KLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCC-------------------------CCCTTCCCSEEECCSSCE
T ss_pred CCCC-CCCccCc--ccccCCCCCEEECCCCC-CCCc-------------------------ChhhcCCCCEEEeeCCCC
Confidence 9998 5667765 45789999999999974 2221 135568899999998763
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=4.8e-18 Score=197.54 Aligned_cols=236 Identities=14% Similarity=0.144 Sum_probs=163.3
Q ss_pred CCCCCcEEEecCccccccccc-ccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEE
Q 038494 565 GTEDLKVLSLSGIHFSSLSSS-LGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLL 640 (1209)
Q Consensus 565 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L 640 (1209)
.+.++++|+++++.++.+|.. +..+++|++|++++|.++.+ ..+.++++|++|++++|.+..+|+ .++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 468999999999999999875 68999999999999999888 589999999999999999998865 48999999999
Q ss_pred eccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEE
Q 038494 641 DLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYR 720 (1209)
Q Consensus 641 ~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 720 (1209)
++++ +.++.+++..++++++|++|+++++... ......+..+++|+.|+++.+.+..++. ..+
T Consensus 123 ~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l------- 185 (390)
T 3o6n_A 123 VLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLE--------RIEDDTFQATTSLQNLQLSSNRLTHVDL-SLI------- 185 (390)
T ss_dssp ECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC--------BCCTTTTSSCTTCCEEECCSSCCSBCCG-GGC-------
T ss_pred ECCC-CccCcCCHHHhcCCCCCcEEECCCCccC--------ccChhhccCCCCCCEEECCCCcCCcccc-ccc-------
Confidence 9999 6788888876789999999999887431 1112347788999999998876654321 112
Q ss_pred EEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEeccc
Q 038494 721 ICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCS 800 (1209)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~ 800 (1209)
++|+.+.+.... .. . +...++|++|+++++.
T Consensus 186 -----------------------------------------~~L~~L~l~~n~-l~----~---~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 186 -----------------------------------------PSLFHANVSYNL-LS----T---LAIPIAVEELDASHNS 216 (390)
T ss_dssp -----------------------------------------TTCSEEECCSSC-CS----E---EECCSSCSEEECCSSC
T ss_pred -----------------------------------------cccceeeccccc-cc----c---cCCCCcceEEECCCCe
Confidence 233333332211 00 0 1223467777777654
Q ss_pred CceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEe
Q 038494 801 EILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVA 880 (1209)
Q Consensus 801 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 880 (1209)
. ..++ ...+++|+.|++.++ .++.. +..+.+++|++|+++++ .++.+++ ..+..+++|+.|+++
T Consensus 217 l-~~~~-------~~~~~~L~~L~l~~n-~l~~~-----~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 217 I-NVVR-------GPVNVELTILKLQHN-NLTDT-----AWLLNYPGLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYIS 280 (390)
T ss_dssp C-CEEE-------CCCCSSCCEEECCSS-CCCCC-----GGGGGCTTCSEEECCSS-CCCEEES-GGGTTCSSCCEEECC
T ss_pred e-eecc-------ccccccccEEECCCC-CCccc-----HHHcCCCCccEEECCCC-cCCCcCh-hHccccccCCEEECC
Confidence 2 2221 123567777777763 34432 11245777777777776 3444432 244567777777777
Q ss_pred cc
Q 038494 881 SC 882 (1209)
Q Consensus 881 ~c 882 (1209)
+|
T Consensus 281 ~n 282 (390)
T 3o6n_A 281 NN 282 (390)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.76 E-value=1.8e-17 Score=198.43 Aligned_cols=295 Identities=17% Similarity=0.130 Sum_probs=218.7
Q ss_pred hhcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCC
Q 038494 516 IIQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINL 592 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L 592 (1209)
..+..++++.++++.+..++. ...+++|++|++.+| .+..+.+..|.++++|++|+|++|.++.+|. .+.++++|
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN--IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC--ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 356789999999999988754 347999999999998 4667767778999999999999999999886 57899999
Q ss_pred cEEeccCcccCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 593 QTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 593 ~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
++|++++|.+..+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++ +.++.+++..+.++++|+.|++.+
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCC
Confidence 9999999999887 6789999999999999999866 45789999999999999 578888887799999999999988
Q ss_pred CCCccccccCCCccchhhhCCCCCCCEEEeeccCCC-CCCcc-cccCCCCeEEEEEcccCccccCCCCCccEEEEecCCC
Q 038494 670 SFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQ-MLPQD-LVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLEN 747 (1209)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~ 747 (1209)
+.... .....+..+++|+.|+++.+... .++.. ...
T Consensus 186 n~i~~--------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------------------------- 223 (477)
T 2id5_A 186 LNINA--------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG---------------------------------- 223 (477)
T ss_dssp CCCCE--------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT----------------------------------
T ss_pred CcCcE--------eChhhcccCcccceeeCCCCccccccCcccccC----------------------------------
Confidence 64311 11234677889999999875432 11111 011
Q ss_pred cchhhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEeccc
Q 038494 748 VSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYK 827 (1209)
Q Consensus 748 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 827 (1209)
.+|+.|++.++. ...+... .+..+++|++|+++++.. ..+.. .....+++|+.|++++
T Consensus 224 --------------~~L~~L~l~~n~-l~~~~~~--~~~~l~~L~~L~Ls~n~l-~~~~~----~~~~~l~~L~~L~L~~ 281 (477)
T 2id5_A 224 --------------LNLTSLSITHCN-LTAVPYL--AVRHLVYLRFLNLSYNPI-STIEG----SMLHELLRLQEIQLVG 281 (477)
T ss_dssp --------------CCCSEEEEESSC-CCSCCHH--HHTTCTTCCEEECCSSCC-CEECT----TSCTTCTTCCEEECCS
T ss_pred --------------ccccEEECcCCc-ccccCHH--HhcCccccCeeECCCCcC-CccCh----hhccccccCCEEECCC
Confidence 134444444322 1111111 146678899999988762 22221 1234578899999988
Q ss_pred ccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEeccc
Q 038494 828 LINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCN 883 (1209)
Q Consensus 828 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 883 (1209)
++++.+....+ ..+++|+.|+++++ .++.++. ..+..+++|+.|++++++
T Consensus 282 -n~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 282 -GQLAVVEPYAF---RGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -SCCSEECTTTB---TTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred -CccceECHHHh---cCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 45655433333 45899999999997 6777765 345678999999998764
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.74 E-value=1.8e-17 Score=203.54 Aligned_cols=301 Identities=15% Similarity=0.142 Sum_probs=226.2
Q ss_pred cCCeEEEEccCCCCccCCCcC--CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcE
Q 038494 518 QKGAIAISIPYGDIQELPERL--ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQT 594 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~ 594 (1209)
..+++.+.+.++.+..+|... .+++|++|++.+| .+..++...|..+++|++|+|++|.++.+|. .++.+++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL--QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC--CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 467889999999998888753 6899999999998 4677777778999999999999999998765 5799999999
Q ss_pred EeccCcccCCc-c-cccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 595 LCLDWCQLEDV-A-AIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 595 L~l~~~~l~~l-~-~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
|++++|.+..+ . .++++++|++|++++|.+..+|+ .++++++|++|++++ +.+..++ ++.+++|+.|+++++.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC---hhhhhhhhhhhcccCc
Confidence 99999999988 3 36999999999999999997755 689999999999999 5676664 5678999999998764
Q ss_pred CccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchh
Q 038494 672 PQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTL 751 (1209)
Q Consensus 672 ~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~ 751 (1209)
. ..+....+|+.|+++.+.+..++... ..+|+.|.+..+.... .
T Consensus 204 l-------------~~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~~----------------------~ 247 (597)
T 3oja_B 204 L-------------STLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD----------------------T 247 (597)
T ss_dssp C-------------SEEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCCC----------------------C
T ss_pred c-------------ccccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCCC----------------------C
Confidence 2 23455668999999988876555432 2466666654222110 0
Q ss_pred hhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEeccccccc
Q 038494 752 LENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINL 831 (1209)
Q Consensus 752 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 831 (1209)
.....+++|+.|++.+.......+ ..++.+++|+.|+++++.. ..++. ....+|+|+.|+++++ .+
T Consensus 248 ----~~l~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l-~~l~~-----~~~~l~~L~~L~Ls~N-~l 313 (597)
T 3oja_B 248 ----AWLLNYPGLVEVDLSYNELEKIMY---HPFVKMQRLERLYISNNRL-VALNL-----YGQPIPTLKVLDLSHN-HL 313 (597)
T ss_dssp ----GGGGGCTTCSEEECCSSCCCEEES---GGGTTCSSCCEEECTTSCC-CEEEC-----SSSCCTTCCEEECCSS-CC
T ss_pred ----hhhccCCCCCEEECCCCccCCCCH---HHhcCccCCCEEECCCCCC-CCCCc-----ccccCCCCcEEECCCC-CC
Confidence 001124678888887654322222 2257899999999999753 33321 2245899999999995 55
Q ss_pred chhcccccccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEeccc
Q 038494 832 EAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCN 883 (1209)
Q Consensus 832 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 883 (1209)
..++.. .+.+++|+.|++++|+ ++.++ +..+++|+.|++++++
T Consensus 314 ~~i~~~----~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 314 LHVERN----QPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCGGG----HHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred CccCcc----cccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCC
Confidence 554322 2468999999999984 66664 3568999999999875
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=2e-18 Score=213.39 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=79.3
Q ss_pred CCCCccEEEeccCCCcc--cc-----------cChhhhcCCCCCcEEEecCccccc-ccccccCC--CCCcEEeccCcc-
Q 038494 539 ECPQLKLLLLLANGDSY--LE-----------ISHLFFEGTEDLKVLSLSGIHFSS-LSSSLGHL--INLQTLCLDWCQ- 601 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~--~~-----------~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l--~~L~~L~l~~~~- 601 (1209)
.+++|++|++.++.... .. ....++..+++|++|+|+++.++. .+..+... .+|++|++++|.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 46778888886642100 00 111223366777777777776652 23334442 347777777765
Q ss_pred cCC--c-ccccCCCCCCEEEccCCCCCc-----cchhccCCCCCCEEeccCCCCCcccC----chhhcCCCCCcEEECCC
Q 038494 602 LED--V-AAIGQLKKLEILSFRYSDIKQ-----LPLEIGQLAQLQLLDLSNCSSLVVIA----PNVISKFSRLEELYMGD 669 (1209)
Q Consensus 602 l~~--l-~~i~~L~~L~~L~l~~~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~~L~l~~ 669 (1209)
+.. + ....++++|++|++++|.+.. ++.....+++|++|+++++ .++.+. +..+.++++|++|++++
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 211 1 223466777777777775432 2333455677777777663 333111 12234566777777665
Q ss_pred CCCccccccCCCccchhhhCCCCCCCEEEee
Q 038494 670 SFPQWDKVEGGSNASLAELKGLSKLTTLEIQ 700 (1209)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~ 700 (1209)
+.. ......+..+++|+.|+++
T Consensus 230 ~~~---------~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 230 FEI---------LELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp CBG---------GGGHHHHHHCTTCCEEEEC
T ss_pred ccH---------HHHHHHHhhhhHHHhhccc
Confidence 421 1122334555666666654
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=2.4e-17 Score=185.71 Aligned_cols=222 Identities=19% Similarity=0.251 Sum_probs=152.6
Q ss_pred CCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEecc
Q 038494 565 GTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLS 643 (1209)
Q Consensus 565 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1209)
...++++|+|+++.++.+|..++++++|++|++++|.+..+ ..++++++|++|++++|.++.+|..++++++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 45778888888888888888888888888888888888877 67888888999999888888888888888899999988
Q ss_pred CCCCCcccCchhhcC---------CCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccC
Q 038494 644 NCSSLVVIAPNVISK---------FSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFV 714 (1209)
Q Consensus 644 ~~~~l~~~~~~~l~~---------L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~ 714 (1209)
+|+....+|.. ++. +++|++|++++|... .....+..+++|+.|+++.+.+..++
T Consensus 159 ~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~---------~lp~~l~~l~~L~~L~L~~N~l~~l~------ 222 (328)
T 4fcg_A 159 ACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR---------SLPASIANLQNLKSLKIRNSPLSALG------ 222 (328)
T ss_dssp EETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC---------CCCGGGGGCTTCCEEEEESSCCCCCC------
T ss_pred CCCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC---------cchHhhcCCCCCCEEEccCCCCCcCc------
Confidence 87766666543 332 444444444433210 11122333444444444433222111
Q ss_pred CCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEE
Q 038494 715 ELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHL 794 (1209)
Q Consensus 715 ~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L 794 (1209)
. .++.+++|++|
T Consensus 223 -----------------------------------------------------------------~---~l~~l~~L~~L 234 (328)
T 4fcg_A 223 -----------------------------------------------------------------P---AIHHLPKLEEL 234 (328)
T ss_dssp -----------------------------------------------------------------G---GGGGCTTCCEE
T ss_pred -----------------------------------------------------------------h---hhccCCCCCEE
Confidence 1 13456778888
Q ss_pred EEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhcccc
Q 038494 795 WVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRL 874 (1209)
Q Consensus 795 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L 874 (1209)
++++|.....++. ....+++|+.|++++|+....++.. .+.+++|+.|+|++|+.+..+|. .+.++++|
T Consensus 235 ~Ls~n~~~~~~p~-----~~~~l~~L~~L~L~~n~~~~~~p~~----~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L 303 (328)
T 4fcg_A 235 DLRGCTALRNYPP-----IFGGRAPLKRLILKDCSNLLTLPLD----IHRLTQLEKLDLRGCVNLSRLPS--LIAQLPAN 303 (328)
T ss_dssp ECTTCTTCCBCCC-----CTTCCCCCCEEECTTCTTCCBCCTT----GGGCTTCCEEECTTCTTCCCCCG--GGGGSCTT
T ss_pred ECcCCcchhhhHH-----HhcCCCCCCEEECCCCCchhhcchh----hhcCCCCCEEeCCCCCchhhccH--HHhhccCc
Confidence 8887765544322 2345788888888887666554322 25689999999999998888886 67889999
Q ss_pred cEEEEec
Q 038494 875 QKVKVAS 881 (1209)
Q Consensus 875 ~~L~l~~ 881 (1209)
+.+.+..
T Consensus 304 ~~l~l~~ 310 (328)
T 4fcg_A 304 CIILVPP 310 (328)
T ss_dssp CEEECCG
T ss_pred eEEeCCH
Confidence 9998875
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=1.6e-18 Score=214.24 Aligned_cols=154 Identities=18% Similarity=0.189 Sum_probs=105.6
Q ss_pred CCCCccEEEeccCCCcccccChhhhcC-CC-CCcEEEecCcc-cc--cccccccCCCCCcEEeccCcccCCc------cc
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEG-TE-DLKVLSLSGIH-FS--SLSSSLGHLINLQTLCLDWCQLEDV------AA 607 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-l~-~Lr~L~L~~~~-i~--~lp~~i~~l~~L~~L~l~~~~l~~l------~~ 607 (1209)
.+++|++|++.++. +.......+.. ++ +|++|++++|. +. .++..+..+++|++|++++|.+... ..
T Consensus 110 ~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI--VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp HCTTCCEEEEESCB--CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred hCCCCCeEEeeccE--ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 57899999999873 22211122233 34 49999999886 32 3455556899999999999986433 34
Q ss_pred ccCCCCCCEEEccCCCCC-----ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCc
Q 038494 608 IGQLKKLEILSFRYSDIK-----QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSN 682 (1209)
Q Consensus 608 i~~L~~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 682 (1209)
..++++|++|++++|.+. .++..+.++++|++|++++| .+..++ ..+.++++|++|.++..... ....
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~-~~~~~~~~L~~L~l~~~~~~-----~~~~ 260 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELV-GFFKAAANLEEFCGGSLNED-----IGMP 260 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGH-HHHHHCTTCCEEEECBCCCC-----TTCT
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHH-HHHhhhhHHHhhcccccccc-----cchH
Confidence 567899999999999876 44555678999999999994 455565 44888999999998752210 0112
Q ss_pred cchhhhCCCCCCCEEEeec
Q 038494 683 ASLAELKGLSKLTTLEIQV 701 (1209)
Q Consensus 683 ~~l~~L~~l~~L~~L~l~~ 701 (1209)
.....+..+++|+.|+++.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~ 279 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSY 279 (592)
T ss_dssp TSSSCCCCCTTCCEEEETT
T ss_pred HHHHHhhccccccccCccc
Confidence 2234556667777776644
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=2.2e-16 Score=178.96 Aligned_cols=123 Identities=19% Similarity=0.279 Sum_probs=95.0
Q ss_pred CCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccCcccCCc--ccccCCCCCCEE
Q 038494 541 PQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEIL 617 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L 617 (1209)
.+++.+++.++. ...+|..+ .++|++|++++|.++.++ ..+.++++|++|++++|.++.+ ..++++++|++|
T Consensus 33 c~l~~l~~~~~~--l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLG--LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSC--CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECCCCC--ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 367888877763 45566543 367888888888888764 4788888888888888888776 568888888888
Q ss_pred EccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 618 SFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 618 ~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
++++|.++.+|..+. ++|++|++++ +.+..+++..+.++++|++|+++++.
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred ECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCc
Confidence 888888888887665 7888888888 56777777667888888888887764
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.71 E-value=7.5e-16 Score=174.44 Aligned_cols=152 Identities=19% Similarity=0.287 Sum_probs=106.0
Q ss_pred CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEE
Q 038494 542 QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILS 618 (1209)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~ 618 (1209)
+++.+++.++ ....+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.++.+ ..++++++|++|+
T Consensus 32 ~l~~l~~~~~--~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDL--GLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTS--CCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCC--CccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 6677777665 244455433 2577888888888887765 678888888888888887776 5678888888888
Q ss_pred ccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEE
Q 038494 619 FRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLE 698 (1209)
Q Consensus 619 l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~ 698 (1209)
+++|.++.+|..+. ++|++|++++ +.+..+++..+.++++|++|+++++.... .......+..+++|+.|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKS------SGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCG------GGBCTTGGGGCTTCCEEE
T ss_pred CCCCcCCccChhhc--ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCc------cCcChhhccCCCCcCEEE
Confidence 88888888877654 6788888887 56677777667888888888887764311 011233466677788888
Q ss_pred eeccCCCCC
Q 038494 699 IQVQDAQML 707 (1209)
Q Consensus 699 l~~~~~~~~ 707 (1209)
++.+....+
T Consensus 178 l~~n~l~~l 186 (330)
T 1xku_A 178 IADTNITTI 186 (330)
T ss_dssp CCSSCCCSC
T ss_pred CCCCccccC
Confidence 776655443
No 50
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.6e-17 Score=205.28 Aligned_cols=129 Identities=17% Similarity=0.222 Sum_probs=71.4
Q ss_pred hcCCCCCcEEEecCccccc-cccccc-CCCCCcEEeccCc-ccCC--c-ccccCCCCCCEEEccCCCCCc-----cchhc
Q 038494 563 FEGTEDLKVLSLSGIHFSS-LSSSLG-HLINLQTLCLDWC-QLED--V-AAIGQLKKLEILSFRYSDIKQ-----LPLEI 631 (1209)
Q Consensus 563 ~~~l~~Lr~L~L~~~~i~~-lp~~i~-~l~~L~~L~l~~~-~l~~--l-~~i~~L~~L~~L~l~~~~~~~-----lp~~i 631 (1209)
+..+++|++|+|+++.++. .+..+. .+++|++|++++| .+.. + ..+.++++|++|++++|.++. ++...
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 4566777777777776652 233343 5677777777777 3443 3 233467777777777765442 22223
Q ss_pred cCCCCCCEEeccCCCCCcccCch----hhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeec
Q 038494 632 GQLAQLQLLDLSNCSSLVVIAPN----VISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQV 701 (1209)
Q Consensus 632 ~~L~~L~~L~l~~~~~l~~~~~~----~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~ 701 (1209)
..+++|++|++++|. ..+... .+.++++|++|++++|.. .......+..+++|+.|++..
T Consensus 181 ~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~--------~~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 181 DTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVP--------LEKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSC--------HHHHHHHHHHCTTCSEEECSB
T ss_pred hcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCc--------HHHHHHHHhcCCcceEccccc
Confidence 356677777777654 111111 123457777777766521 011223345566677666543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.1e-16 Score=176.93 Aligned_cols=171 Identities=22% Similarity=0.260 Sum_probs=137.5
Q ss_pred EEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccCccc
Q 038494 524 ISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDWCQL 602 (1209)
Q Consensus 524 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~l 602 (1209)
....++.+..+|... .++|++|+++++ .+..++...|.++++|++|++++|.++.++ ..++++++|++|++++|.+
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNN--RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccccccc-cccCcEEECCCC--cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 566777888888754 368999999988 466777777889999999999999998774 5789999999999999999
Q ss_pred CCc-c-cccCCCCCCEEEccCCCCCccch--hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccccc
Q 038494 603 EDV-A-AIGQLKKLEILSFRYSDIKQLPL--EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVE 678 (1209)
Q Consensus 603 ~~l-~-~i~~L~~L~~L~l~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 678 (1209)
+.+ . .++++++|++|++++|.++.+|. .+.++++|++|++++|..+..+++..++++++|++|+++++...
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~----- 187 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ----- 187 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-----
Confidence 888 3 48899999999999999998887 68889999999999866777777777888999999998876421
Q ss_pred CCCccchhhhCCCCCCCEEEeeccCCC
Q 038494 679 GGSNASLAELKGLSKLTTLEIQVQDAQ 705 (1209)
Q Consensus 679 ~~~~~~l~~L~~l~~L~~L~l~~~~~~ 705 (1209)
......+..+++|+.|+++.+...
T Consensus 188 ---~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 188 ---SYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp ---EECTTTTTTCSEEEEEEEECSCST
T ss_pred ---ccCHHHHhccccCCeecCCCCccc
Confidence 112345667788888888776554
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=3.6e-17 Score=202.19 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=66.3
Q ss_pred cChhhhcCCCCCcEEEecCccc-ccc---c------------ccccCCCCCcEEeccCcccCCc--cccc-CCCCCCEEE
Q 038494 558 ISHLFFEGTEDLKVLSLSGIHF-SSL---S------------SSLGHLINLQTLCLDWCQLEDV--AAIG-QLKKLEILS 618 (1209)
Q Consensus 558 ~~~~~~~~l~~Lr~L~L~~~~i-~~l---p------------~~i~~l~~L~~L~l~~~~l~~l--~~i~-~L~~L~~L~ 618 (1209)
.+...+..+++|+.|+++++.. .++ | .....+++|++|++++|.+... ..+. .+++|++|+
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 3455678889999999998752 211 1 1134567777777777776543 3443 567777777
Q ss_pred ccCC-CCCc--cchhccCCCCCCEEeccCCCCCcccCchh----hcCCCCCcEEECCCC
Q 038494 619 FRYS-DIKQ--LPLEIGQLAQLQLLDLSNCSSLVVIAPNV----ISKFSRLEELYMGDS 670 (1209)
Q Consensus 619 l~~~-~~~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~----l~~L~~L~~L~l~~~ 670 (1209)
+++| .+.. ++..+.++++|++|++++|. ++...... ...+++|++|+++.+
T Consensus 137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 7776 4442 44444567777777777653 33222111 224556666666554
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.68 E-value=1.1e-15 Score=173.01 Aligned_cols=287 Identities=15% Similarity=0.175 Sum_probs=200.2
Q ss_pred CeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEecc
Q 038494 520 GAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLD 598 (1209)
Q Consensus 520 ~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~ 598 (1209)
..+.+.+.++.+..+|... .+++++|++.+| .+..++...|.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN--DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCC--cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5678888888888888765 479999999998 46677777789999999999999999976 7789999999999999
Q ss_pred CcccCCc-ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcc--cCchhhcCCCCCcEEECCCCCCcc
Q 038494 599 WCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVV--IAPNVISKFSRLEELYMGDSFPQW 674 (1209)
Q Consensus 599 ~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~~ 674 (1209)
+|.++.+ ..+. ++|++|++++|.+..+|.. +.++++|++|++++ +.++. ..+..+..+ +|++|+++++....
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC-CccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 9999888 4444 8999999999999988764 88999999999999 45542 444556777 89999998764311
Q ss_pred ccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcc-c-ccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhh
Q 038494 675 DKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQD-L-VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLL 752 (1209)
Q Consensus 675 ~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~ 752 (1209)
....+ .++|+.|+++.+.+..++.. + ..
T Consensus 187 ---------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l--------------------------------------- 216 (332)
T 2ft3_A 187 ---------IPKDL--PETLNELHLDHNKIQAIELEDLLRY--------------------------------------- 216 (332)
T ss_dssp ---------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTC---------------------------------------
T ss_pred ---------cCccc--cCCCCEEECCCCcCCccCHHHhcCC---------------------------------------
Confidence 11111 15788888888776554321 0 11
Q ss_pred hHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccc
Q 038494 753 ENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLE 832 (1209)
Q Consensus 753 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 832 (1209)
++|+.|++.+..- ..... ..+..+++|++|+++++. +..++. ....+++|+.|++++ +.++
T Consensus 217 ---------~~L~~L~L~~N~l-~~~~~--~~~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~-N~l~ 277 (332)
T 2ft3_A 217 ---------SKLYRLGLGHNQI-RMIEN--GSLSFLPTLRELHLDNNK-LSRVPA-----GLPDLKLLQVVYLHT-NNIT 277 (332)
T ss_dssp ---------TTCSCCBCCSSCC-CCCCT--TGGGGCTTCCEEECCSSC-CCBCCT-----TGGGCTTCCEEECCS-SCCC
T ss_pred ---------CCCCEEECCCCcC-CcCCh--hHhhCCCCCCEEECCCCc-CeecCh-----hhhcCccCCEEECCC-CCCC
Confidence 3344454443221 11111 114567889999998875 333322 134578999999988 5677
Q ss_pred hhcccccccc---cccCCccEEEEecCCCcc-ccccHHHHhhcccccEEEEeccc
Q 038494 833 AICHSQLRED---QFFSNLKIIEVESCDKLK-HLFSFSIARNLLRLQKVKVASCN 883 (1209)
Q Consensus 833 ~~~~~~~~~~---~~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~l~~c~ 883 (1209)
.+....+... ..++.|+.|++.+++... .+++ ..+..+++|+.++++++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ccChhHccccccccccccccceEeecCcccccccCc-ccccccchhhhhhccccc
Confidence 6654433221 226789999999986432 2333 456778999999988764
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.67 E-value=1.8e-15 Score=171.34 Aligned_cols=288 Identities=17% Similarity=0.182 Sum_probs=195.6
Q ss_pred CCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEec
Q 038494 519 KGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCL 597 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l 597 (1209)
...+.+.+.++.+..+|... .+++++|++++| .+..++...|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNN--KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSS--CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCC--cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 35678888888888888654 479999999998 46777777789999999999999999977 778999999999999
Q ss_pred cCcccCCc-ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcc--cCchhhcCCCCCcEEECCCCCCc
Q 038494 598 DWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVV--IAPNVISKFSRLEELYMGDSFPQ 673 (1209)
Q Consensus 598 ~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~--~~~~~l~~L~~L~~L~l~~~~~~ 673 (1209)
++|.++.+ ..+. ++|++|++++|.+..++. .+.++++|++|++++| .+.. ..+..+.++++|++|+++++...
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99999887 4443 799999999999998765 4889999999999984 4432 44555889999999999887532
Q ss_pred cccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcc-c-ccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchh
Q 038494 674 WDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQD-L-VFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTL 751 (1209)
Q Consensus 674 ~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~ 751 (1209)
. . ...+ .++|+.|+++.+.+..++.. + .+
T Consensus 185 ~------l---~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l-------------------------------------- 215 (330)
T 1xku_A 185 T------I---PQGL--PPSLTELHLDGNKITKVDAASLKGL-------------------------------------- 215 (330)
T ss_dssp S------C---CSSC--CTTCSEEECTTSCCCEECTGGGTTC--------------------------------------
T ss_pred c------C---Cccc--cccCCEEECCCCcCCccCHHHhcCC--------------------------------------
Confidence 1 0 1111 26889999988766533211 0 12
Q ss_pred hhHHHHHHHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEeccccccc
Q 038494 752 LENYGMKMLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINL 831 (1209)
Q Consensus 752 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 831 (1209)
++|+.|++.+... ..... ..+..+++|++|+++++. +..++. ....+++|+.|++++ +.+
T Consensus 216 ----------~~L~~L~Ls~n~l-~~~~~--~~~~~l~~L~~L~L~~N~-l~~lp~-----~l~~l~~L~~L~l~~-N~i 275 (330)
T 1xku_A 216 ----------NNLAKLGLSFNSI-SAVDN--GSLANTPHLRELHLNNNK-LVKVPG-----GLADHKYIQVVYLHN-NNI 275 (330)
T ss_dssp ----------TTCCEEECCSSCC-CEECT--TTGGGSTTCCEEECCSSC-CSSCCT-----TTTTCSSCCEEECCS-SCC
T ss_pred ----------CCCCEEECCCCcC-ceeCh--hhccCCCCCCEEECCCCc-CccCCh-----hhccCCCcCEEECCC-CcC
Confidence 2344444433221 11111 114567788888888875 223321 124577888888887 456
Q ss_pred chhccccccc---ccccCCccEEEEecCCCcc-ccccHHHHhhcccccEEEEecc
Q 038494 832 EAICHSQLRE---DQFFSNLKIIEVESCDKLK-HLFSFSIARNLLRLQKVKVASC 882 (1209)
Q Consensus 832 ~~~~~~~~~~---~~~l~~L~~L~l~~c~~l~-~l~~~~~~~~l~~L~~L~l~~c 882 (1209)
+.+....+.. ....+.|+.|++.+++-.. .+++ ..+..+.+++.++++++
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred CccChhhcCCcccccccccccceEeecCcccccccCc-cccccccceeEEEeccc
Confidence 6655443321 1235778888888875322 1222 35566778888887764
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=2.4e-15 Score=177.47 Aligned_cols=171 Identities=25% Similarity=0.306 Sum_probs=135.1
Q ss_pred eEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccC
Q 038494 521 AIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDW 599 (1209)
Q Consensus 521 ~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~ 599 (1209)
.+.+...+..+..+|... .++++.|++.+| .+..++...|.++++|++|+|++|.++.++ ..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHEN--QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSC--CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCC--cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 346666777778888655 378899999888 466777777889999999999999998765 5788999999999999
Q ss_pred cccCCc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 600 CQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 600 ~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
|.++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|...
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 198 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--- 198 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS---
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc---
Confidence 998888 468899999999999998888765 57889999999999888888888777888899999998876431
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
.+..+..+++|+.|+++.+.+
T Consensus 199 -------~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 199 -------EIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp -------SCCCCTTCSSCCEEECTTSCC
T ss_pred -------cccccCCCcccCEEECCCCcc
Confidence 122356667777777766543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=2.2e-15 Score=178.48 Aligned_cols=171 Identities=23% Similarity=0.255 Sum_probs=134.8
Q ss_pred eEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccC
Q 038494 521 AIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDW 599 (1209)
Q Consensus 521 ~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~ 599 (1209)
.+.+...+..+..+|... .+++++|++++| .+..++...|.++++|++|+|++|.++.++ ..+.++.+|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMEN--NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCC--cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 345666677777777654 378999999888 466677777889999999999999998765 5788999999999999
Q ss_pred cccCCc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 600 CQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 600 ~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
|.++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..++...+.++++|++|++++|...
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--- 209 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK--- 209 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---
Confidence 998887 458889999999999999888865 57889999999999888888888777888899999998876421
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
.+..+..+++|+.|+++.+.+
T Consensus 210 -------~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 210 -------DMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp -------SCCCCTTCTTCCEEECTTSCC
T ss_pred -------ccccccccccccEEECcCCcC
Confidence 122456667777777766543
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=5.3e-16 Score=173.62 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=84.5
Q ss_pred CCeEEEEccCCCCcc---CCCcC-CCCCccEEEecc-CCCcccccChhhhcCCCCCcEEEecCcccc-cccccccCCCCC
Q 038494 519 KGAIAISIPYGDIQE---LPERL-ECPQLKLLLLLA-NGDSYLEISHLFFEGTEDLKVLSLSGIHFS-SLSSSLGHLINL 592 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~---~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~L 592 (1209)
.+++++.+.++.+.. +|... .+++|++|++.+ +. ....+|. .|.++++|++|++++|.++ .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-ccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 456666666666552 44332 566666666663 32 2222333 2456666666666666665 556666666666
Q ss_pred cEEeccCcccCC-c-ccccCCCCCCEEEccCCCCC-ccchhccCCC-CCCEEeccCCCCCcccCchhhcCCCCCcEEECC
Q 038494 593 QTLCLDWCQLED-V-AAIGQLKKLEILSFRYSDIK-QLPLEIGQLA-QLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 593 ~~L~l~~~~l~~-l-~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~-~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 668 (1209)
++|++++|.+.. + ..++++++|++|++++|.++ .+|..+.++. +|++|++++ +.+....+..++.+. |++|+++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCC-CSEEECC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCChHHhCCc-ccEEECc
Confidence 666666666553 2 55666666666666666665 5566666665 666666666 344433333355554 6666665
Q ss_pred CC
Q 038494 669 DS 670 (1209)
Q Consensus 669 ~~ 670 (1209)
+|
T Consensus 206 ~N 207 (313)
T 1ogq_A 206 RN 207 (313)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.65 E-value=1.6e-15 Score=170.72 Aligned_cols=148 Identities=24% Similarity=0.453 Sum_probs=110.0
Q ss_pred cCCeEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 518 QKGAIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
...++.+.+.++.+..+|... .+++|++|++.+|. +..+|.. +.++++|++|++++|.++.+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~--l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG--LMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC--CCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC--ccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 456788888888888777654 67888888888774 3456543 4778888888888888888888888888888888
Q ss_pred ccCccc-CCc-ccc---------cCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEE
Q 038494 597 LDWCQL-EDV-AAI---------GQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEEL 665 (1209)
Q Consensus 597 l~~~~l-~~l-~~i---------~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L 665 (1209)
+++|.+ ..+ ..+ .++++|++|++++|.++.+|..++++++|++|++++ +.+..+++. ++++++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEE
Confidence 888763 333 333 348888888888888888888888888888888887 456666654 7777888888
Q ss_pred ECCCC
Q 038494 666 YMGDS 670 (1209)
Q Consensus 666 ~l~~~ 670 (1209)
++++|
T Consensus 235 ~Ls~n 239 (328)
T 4fcg_A 235 DLRGC 239 (328)
T ss_dssp ECTTC
T ss_pred ECcCC
Confidence 77765
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=3.2e-15 Score=167.25 Aligned_cols=171 Identities=25% Similarity=0.215 Sum_probs=130.5
Q ss_pred EEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc---cccccCCCCCcEEeccC
Q 038494 523 AISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL---SSSLGHLINLQTLCLDW 599 (1209)
Q Consensus 523 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~L~~L~l~~ 599 (1209)
++...++.+..+|... .+++++|++.++ .+..++..+|.++++|++|++++|.++.+ |..+..+.+|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n--~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESN--KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCC--ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 5666677777787654 378999999887 46678888888999999999999988755 56777889999999999
Q ss_pred cccCCc-ccccCCCCCCEEEccCCCCCccch--hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 600 CQLEDV-AAIGQLKKLEILSFRYSDIKQLPL--EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 600 ~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~--~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
|.+..+ ..+..+++|++|++++|.++.++. .+.++++|++|++++ +.+...++..+..+++|++|+++++....
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEEECCCCcccc--
Confidence 998877 668889999999999998887764 688889999999988 45666666667888899999887764210
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
......+..+++|+.|+++.+.+
T Consensus 165 -----~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 165 -----NFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp -----GEECSCCTTCTTCCEEECTTSCC
T ss_pred -----ccchhHHhhCcCCCEEECCCCCc
Confidence 01223456667777777766543
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=3.2e-14 Score=172.41 Aligned_cols=256 Identities=20% Similarity=0.158 Sum_probs=185.7
Q ss_pred CCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEecc
Q 038494 519 KGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLD 598 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 598 (1209)
..++.+.+.++.+..+|.... ++|++|++.+|. +..++. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~--l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN--LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC--CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCC--CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 358899999999999987654 899999999984 556665 57899999999999999987 78999999999
Q ss_pred CcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccccc
Q 038494 599 WCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVE 678 (1209)
Q Consensus 599 ~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 678 (1209)
+|.++.++. .+.+|++|++++|.++.+|.. +++|++|++++ +.++.++. .+.+|+.|++++|.+..
T Consensus 110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~---- 175 (622)
T 3g06_A 110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPA----LPSELCKLWAYNNQLTS---- 175 (622)
T ss_dssp SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC----
T ss_pred CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC-CcCCCcCC----ccCCCCEEECCCCCCCC----
Confidence 999988854 678999999999999999874 48899999999 46776654 35788999998764311
Q ss_pred CCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHH
Q 038494 679 GGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMK 758 (1209)
Q Consensus 679 ~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~ 758 (1209)
+. ..+++|+.|+++.+.+..++.. ..+|+.
T Consensus 176 ------l~--~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~---------------------------------------- 205 (622)
T 3g06_A 176 ------LP--MLPSGLQELSVSDNQLASLPTL--PSELYK---------------------------------------- 205 (622)
T ss_dssp ------CC--CCCTTCCEEECCSSCCSCCCCC--CTTCCE----------------------------------------
T ss_pred ------Cc--ccCCCCcEEECCCCCCCCCCCc--cchhhE----------------------------------------
Confidence 11 3467899999988877665532 133333
Q ss_pred HHhcccceeeeccccccccccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccc
Q 038494 759 MLLKLTEDIRLEELTGVQNVVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQ 838 (1209)
Q Consensus 759 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 838 (1209)
|.+.++. ... ++ ..+++|+.|+++++. +..++ ..+++|+.|+++++ +++.++.
T Consensus 206 --------L~L~~N~-l~~----l~--~~~~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~Ls~N-~L~~lp~-- 258 (622)
T 3g06_A 206 --------LWAYNNR-LTS----LP--ALPSGLKELIVSGNR-LTSLP--------VLPSELKELMVSGN-RLTSLPM-- 258 (622)
T ss_dssp --------EECCSSC-CSS----CC--CCCTTCCEEECCSSC-CSCCC--------CCCTTCCEEECCSS-CCSCCCC--
T ss_pred --------EECcCCc-ccc----cC--CCCCCCCEEEccCCc-cCcCC--------CCCCcCcEEECCCC-CCCcCCc--
Confidence 3332211 111 11 224678888887764 22221 34678888888873 5554332
Q ss_pred cccccccCCccEEEEecCCCccccccHHHHhhcccccEEEEeccc
Q 038494 839 LREDQFFSNLKIIEVESCDKLKHLFSFSIARNLLRLQKVKVASCN 883 (1209)
Q Consensus 839 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 883 (1209)
.+++|+.|++++| .++.+|. .+.++++|+.|++++++
T Consensus 259 -----~~~~L~~L~Ls~N-~L~~lp~--~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 259 -----LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -----CCTTCCEEECCSS-CCCSCCG--GGGGSCTTCEEECCSCC
T ss_pred -----ccccCcEEeCCCC-CCCcCCH--HHhhccccCEEEecCCC
Confidence 4678888888887 5667764 46778888888888775
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=171.68 Aligned_cols=152 Identities=20% Similarity=0.298 Sum_probs=118.9
Q ss_pred ccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEc
Q 038494 543 LKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 619 (1209)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l 619 (1209)
.+.++..+. ....+|..+ .+.+++|+|++|.++.++ ..+.++++|++|++++|.++.+ ..+.++++|++|++
T Consensus 45 ~~~v~c~~~--~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRK--NLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSC--CCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCC--CcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 445555554 456677654 368999999999999775 6899999999999999999887 67899999999999
Q ss_pred cCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEE
Q 038494 620 RYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLE 698 (1209)
Q Consensus 620 ~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~ 698 (1209)
++|.++.+|. .+.++++|++|++++ +.+..+++..+.++++|++|+++++... .......+..+++|+.|+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l-------~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRL-------SYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTC-------CEECTTTTTTCSSCCEEE
T ss_pred CCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCc-------ceeCcchhhcccccCeec
Confidence 9999998876 588999999999999 6788888877899999999999874310 001122466788888888
Q ss_pred eeccCCCCC
Q 038494 699 IQVQDAQML 707 (1209)
Q Consensus 699 l~~~~~~~~ 707 (1209)
++.+.+..+
T Consensus 192 L~~n~l~~~ 200 (440)
T 3zyj_A 192 LAMCNLREI 200 (440)
T ss_dssp CTTSCCSSC
T ss_pred CCCCcCccc
Confidence 877665433
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=1.1e-14 Score=172.46 Aligned_cols=152 Identities=18% Similarity=0.245 Sum_probs=118.6
Q ss_pred ccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEc
Q 038494 543 LKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 619 (1209)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l 619 (1209)
...++..+. ....+|..+ .++|++|+|++|.++.+ |..|.++++|++|++++|.++.+ ..+.++++|++|++
T Consensus 56 ~~~v~c~~~--~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRR--GLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCC--CcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 345555554 355666543 36899999999999976 56899999999999999999887 67899999999999
Q ss_pred cCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEE
Q 038494 620 RYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLE 698 (1209)
Q Consensus 620 ~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~ 698 (1209)
++|.++.+|.. +.++++|++|++++ +.+..+++..+.++++|++|+++++... .......+..+++|+.|+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l-------~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKL-------EYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTC-------CEECTTTTTTCTTCCEEE
T ss_pred CCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCc-------cccChhhccCCCCCCEEE
Confidence 99999988765 88899999999999 6788888877899999999999874210 001122466788888888
Q ss_pred eeccCCCCC
Q 038494 699 IQVQDAQML 707 (1209)
Q Consensus 699 l~~~~~~~~ 707 (1209)
++.+.+..+
T Consensus 203 L~~n~l~~~ 211 (452)
T 3zyi_A 203 LGMCNIKDM 211 (452)
T ss_dssp CTTSCCSSC
T ss_pred CCCCccccc
Confidence 877665433
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=5.3e-15 Score=169.14 Aligned_cols=153 Identities=24% Similarity=0.335 Sum_probs=113.1
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCC
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLE 615 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~ 615 (1209)
.|+.....+++++ ....+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.++.+ ..++++++|+
T Consensus 29 ~C~~~~~c~~~~~--~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSG--SLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCST--TCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCC--Cccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4555556666655 4566776543 588999999999988776 788999999999999988877 5688899999
Q ss_pred EEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCc-hhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCC
Q 038494 616 ILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAP-NVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSK 693 (1209)
Q Consensus 616 ~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~ 693 (1209)
+|++++|.++.+|.. ++++++|++|++++ +.++.++. ..+.++++|++|++++|... .......+..+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~~l~~ 175 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLTF 175 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSC-------CEECTTTTTTCCE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccc-------cccCHHHccCCCC
Confidence 999999988888876 78899999999988 56777766 45778888888888765210 0111234566677
Q ss_pred CCEEEeeccCC
Q 038494 694 LTTLEIQVQDA 704 (1209)
Q Consensus 694 L~~L~l~~~~~ 704 (1209)
|+.|+++.+..
T Consensus 176 L~~L~l~~n~l 186 (353)
T 2z80_A 176 LEELEIDASDL 186 (353)
T ss_dssp EEEEEEEETTC
T ss_pred CCEEECCCCCc
Confidence 77777766554
No 64
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=2.3e-15 Score=168.40 Aligned_cols=151 Identities=17% Similarity=0.267 Sum_probs=113.3
Q ss_pred CCccEEEeccCCCccc-ccChhhhcCCCCCcEEEecC-cccc-cccccccCCCCCcEEeccCcccCC-c-ccccCCCCCC
Q 038494 541 PQLKLLLLLANGDSYL-EISHLFFEGTEDLKVLSLSG-IHFS-SLSSSLGHLINLQTLCLDWCQLED-V-AAIGQLKKLE 615 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~-~~~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~L~~L~l~~~~l~~-l-~~i~~L~~L~ 615 (1209)
.++++|++.++..... .++. .|.++++|++|++++ +.+. .+|..++++++|++|++++|.+.. + ..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 5789999988752110 4554 468899999999995 7776 788899999999999999999874 3 6789999999
Q ss_pred EEEccCCCCC-ccchhccCCCCCCEEeccCCCCCcccCchhhcCCC-CCcEEECCCCCCccccccCCCccchhhhCCCCC
Q 038494 616 ILSFRYSDIK-QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFS-RLEELYMGDSFPQWDKVEGGSNASLAELKGLSK 693 (1209)
Q Consensus 616 ~L~l~~~~~~-~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~ 693 (1209)
+|++++|.+. .+|..+.++++|++|++++ +.++...+..+++++ +|++|+++++... + .....+..++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~-----~---~~~~~~~~l~- 198 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLT-----G---KIPPTFANLN- 198 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEE-----E---ECCGGGGGCC-
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeee-----c---cCChHHhCCc-
Confidence 9999999888 7888899999999999998 556633334488887 8999999876421 1 1122334444
Q ss_pred CCEEEeecc
Q 038494 694 LTTLEIQVQ 702 (1209)
Q Consensus 694 L~~L~l~~~ 702 (1209)
|+.|+++.+
T Consensus 199 L~~L~Ls~N 207 (313)
T 1ogq_A 199 LAFVDLSRN 207 (313)
T ss_dssp CSEEECCSS
T ss_pred ccEEECcCC
Confidence 777777654
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.4e-16 Score=190.14 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=103.7
Q ss_pred CCccEEEeccCCCccccc-ChhhhcCCCCCcEEEecCcccc-----cccccccCCCCCcEEeccCcccCCc--ccc-cCC
Q 038494 541 PQLKLLLLLANGDSYLEI-SHLFFEGTEDLKVLSLSGIHFS-----SLSSSLGHLINLQTLCLDWCQLEDV--AAI-GQL 611 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~l~~l--~~i-~~L 611 (1209)
+++++|+++++. +... ...++..+++|++|++++|.++ .++..+..+++|++|++++|.+... ..+ ..+
T Consensus 3 ~~l~~L~Ls~~~--l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEE--LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCC--CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcc--cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 567778887664 2222 2334677889999999999887 4577788889999999999887653 222 234
Q ss_pred C----CCCEEEccCCCCC-----ccchhccCCCCCCEEeccCCCCCcccCchhh-----cCCCCCcEEECCCCCCccccc
Q 038494 612 K----KLEILSFRYSDIK-----QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVI-----SKFSRLEELYMGDSFPQWDKV 677 (1209)
Q Consensus 612 ~----~L~~L~l~~~~~~-----~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l-----~~L~~L~~L~l~~~~~~~~~~ 677 (1209)
. +|++|++++|.+. .+|..+.++++|++|++++| .+.......+ ...++|++|++++|.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-- 157 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-- 157 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH--
Confidence 4 6999999998877 45777888999999999884 3543322212 2356788888887643110
Q ss_pred cCCCccchhhhCCCCCCCEEEeeccC
Q 038494 678 EGGSNASLAELKGLSKLTTLEIQVQD 703 (1209)
Q Consensus 678 ~~~~~~~l~~L~~l~~L~~L~l~~~~ 703 (1209)
........+..+++|+.|+++.+.
T Consensus 158 --~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 158 --SCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp --GHHHHHHHHHHCTTCCEEECCSSB
T ss_pred --HHHHHHHHHhhCCCCCEEECcCCC
Confidence 001123345567788888876653
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=1.3e-14 Score=160.38 Aligned_cols=195 Identities=23% Similarity=0.328 Sum_probs=147.7
Q ss_pred hhcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcc-cccc-cccccCCCC
Q 038494 516 IIQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIH-FSSL-SSSLGHLIN 591 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~ 591 (1209)
..+.+++++.++++.+..++.. ..+++|++|++.+| .+..+....|.++++|++|++++|. +..+ |..+..+++
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~ 106 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN--VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR 106 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS--CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC--ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence 3466888888888888877643 36888899988887 4556666667888889999998886 7776 567888888
Q ss_pred CcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECC
Q 038494 592 LQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 592 L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 668 (1209)
|++|++++|.+..+ ..+.++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+++..+..+++|++|+++
T Consensus 107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECC
Confidence 99999998888777 5578888899999988888877654 78888899999888 56777777668888889999888
Q ss_pred CCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcc--cccCCCCeEEE
Q 038494 669 DSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQD--LVFVELPRYRI 721 (1209)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l 721 (1209)
++... ......+..+++|+.|+++.+.+..++.. ....+|+.|.+
T Consensus 186 ~n~l~--------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 186 QNRVA--------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp SSCCC--------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred CCccc--------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 76431 11134567778888888888887766643 24555666554
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=4.5e-14 Score=171.15 Aligned_cols=258 Identities=18% Similarity=0.100 Sum_probs=163.6
Q ss_pred CCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEcc
Q 038494 541 PQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFR 620 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~ 620 (1209)
.++++|++.++. +..+|..++ ++|++|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~--L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESG--LTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSC--CSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEEC
T ss_pred CCCcEEEecCCC--cCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECc
Confidence 357788887773 456666543 688888888888888877 56788888888888877744 67888888888
Q ss_pred CCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEee
Q 038494 621 YSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQ 700 (1209)
Q Consensus 621 ~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~ 700 (1209)
+|.++.+|. .+.+|++|++++ +.++.+|.. +++|++|++++|.+.. +. ..+.+|+.|+++
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~----l~~L~~L~Ls~N~l~~----------l~--~~~~~L~~L~L~ 169 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL----PPGLQELSVSDNQLAS----------LP--ALPSELCKLWAY 169 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCS-SCCSCCCCC----CTTCCEEECCSSCCSC----------CC--CCCTTCCEEECC
T ss_pred CCcCCCCCC---CCCCcCEEECCC-CCCCcCCCC----CCCCCEEECcCCcCCC----------cC--CccCCCCEEECC
Confidence 888888876 567888888887 556666542 4778888887764210 00 123567777777
Q ss_pred ccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeeccccccccccc
Q 038494 701 VQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQNVVH 780 (1209)
Q Consensus 701 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 780 (1209)
.+.+..++ ... ++|+.|++.+.. +..
T Consensus 170 ~N~l~~l~--~~~------------------------------------------------~~L~~L~Ls~N~-l~~--- 195 (622)
T 3g06_A 170 NNQLTSLP--MLP------------------------------------------------SGLQELSVSDNQ-LAS--- 195 (622)
T ss_dssp SSCCSCCC--CCC------------------------------------------------TTCCEEECCSSC-CSC---
T ss_pred CCCCCCCc--ccC------------------------------------------------CCCcEEECCCCC-CCC---
Confidence 76655443 111 233444443321 111
Q ss_pred cccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCcc
Q 038494 781 ELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLK 860 (1209)
Q Consensus 781 ~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 860 (1209)
++ ..+++|+.|.+.++. +..++ ..+++|+.|+++++ +++.++ ..+++|++|++++| +++
T Consensus 196 -l~--~~~~~L~~L~L~~N~-l~~l~--------~~~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~L~Ls~N-~L~ 254 (622)
T 3g06_A 196 -LP--TLPSELYKLWAYNNR-LTSLP--------ALPSGLKELIVSGN-RLTSLP-------VLPSELKELMVSGN-RLT 254 (622)
T ss_dssp -CC--CCCTTCCEEECCSSC-CSSCC--------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCS
T ss_pred -CC--CccchhhEEECcCCc-ccccC--------CCCCCCCEEEccCC-ccCcCC-------CCCCcCcEEECCCC-CCC
Confidence 11 124678888887764 22221 23577888888773 555432 34678888888886 566
Q ss_pred ccccHHHHhhcccccEEEEecccccccccccCCCCCCccccccccccCCCCCCCccCccccceEeeccccch
Q 038494 861 HLFSFSIARNLLRLQKVKVASCNKLEMTVGPDREKPTTSLGFNEIIADDDTAPKVGIPSSLVNLKVSKCQKI 932 (1209)
Q Consensus 861 ~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~sL~~L~l~~c~~l 932 (1209)
.+|. .+++|+.|++++| .+..++ ..+..+++|+.|++++|+-.
T Consensus 255 ~lp~-----~~~~L~~L~Ls~N-~L~~lp-----------------------~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 255 SLPM-----LPSGLLSLSVYRN-QLTRLP-----------------------ESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCCC-----CCTTCCEEECCSS-CCCSCC-----------------------GGGGGSCTTCEEECCSCCCC
T ss_pred cCCc-----ccccCcEEeCCCC-CCCcCC-----------------------HHHhhccccCEEEecCCCCC
Confidence 6665 4677888888776 333221 22355677777777776543
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.57 E-value=1.6e-14 Score=159.62 Aligned_cols=171 Identities=20% Similarity=0.292 Sum_probs=131.6
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCc
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWC 600 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~ 600 (1209)
+.+...+..+..+|... .+++++|++.++ .+..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n--~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGN--RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTS--CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCC--cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56667777777777643 578999999887 46667777778899999999999988876 668889999999999999
Q ss_pred c-cCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 601 Q-LEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 601 ~-l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
. +..+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++ +.+..+++..++++++|++|+++++....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 167 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISS-- 167 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccc--
Confidence 7 7776 6688899999999999888876 45678889999999988 56777777667888889999888764210
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
.....+..+++|+.|+++.+.+
T Consensus 168 ------~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 168 ------VPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ------ECTTTTTTCTTCCEEECCSSCC
T ss_pred ------cCHHHhcCccccCEEECCCCcc
Confidence 0112356677788888776554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.56 E-value=1.3e-14 Score=162.75 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=77.8
Q ss_pred ccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCccchhccC
Q 038494 555 YLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQ 633 (1209)
Q Consensus 555 ~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~ 633 (1209)
....+...+..+++|++|++++|.++.++ ..+..+++|++|++++|.+.....+..+++|++|++++|.++.+|.
T Consensus 22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----
T ss_pred hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----
Confidence 34445556677778888888888888665 5788888888888888888777558888888888888887776653
Q ss_pred CCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 634 LAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 634 L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
.++|++|++++ +.+..+++. .+++|++|++++|
T Consensus 98 ~~~L~~L~l~~-n~l~~~~~~---~~~~L~~L~l~~N 130 (317)
T 3o53_A 98 GPSIETLHAAN-NNISRVSCS---RGQGKKNIYLANN 130 (317)
T ss_dssp CTTCCEEECCS-SCCSEEEEC---CCSSCEEEECCSS
T ss_pred CCCcCEEECCC-CccCCcCcc---ccCCCCEEECCCC
Confidence 37788888887 455555432 3566777776655
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=1.6e-13 Score=153.00 Aligned_cols=188 Identities=19% Similarity=0.254 Sum_probs=157.7
Q ss_pred cCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEec
Q 038494 518 QKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCL 597 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l 597 (1209)
..+++++.+.++.+..++....+++|++|++++| .+..++. +..+++|++|++++|.++.+| .+..+++|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n--~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN--QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCC--cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 4578999999999988887678999999999988 4556665 789999999999999999886 5899999999999
Q ss_pred cCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccc
Q 038494 598 DWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKV 677 (1209)
Q Consensus 598 ~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 677 (1209)
++|.++.+..+..+++|++|++++|.++.+|. +.++++|++|++++ +.++.+++ +.++++|++|++++|...
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccC----
Confidence 99999988779999999999999999998876 88999999999999 56777665 889999999999887431
Q ss_pred cCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEc
Q 038494 678 EGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIG 724 (1209)
Q Consensus 678 ~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 724 (1209)
.+..+..+++|+.|+++.+.+..++.-..+.+|+.|.+...
T Consensus 187 ------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 ------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred ------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 12237788999999999998887765446677888877644
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.53 E-value=1.4e-14 Score=162.48 Aligned_cols=245 Identities=19% Similarity=0.094 Sum_probs=168.9
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEE
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILS 618 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~ 618 (1209)
.+++|++|++++| .+..++...|.++++|++|++++|.++.+++ +..+++|++|++++|.++.+. ..++|++|+
T Consensus 32 ~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTS--CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEE
T ss_pred cCCCCCEEECcCC--ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEE
Confidence 4678999999888 4666777778999999999999999987765 899999999999999876653 348999999
Q ss_pred ccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhh-CCCCCCCEE
Q 038494 619 FRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAEL-KGLSKLTTL 697 (1209)
Q Consensus 619 l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L-~~l~~L~~L 697 (1209)
+++|.++.++.. .+++|++|++++ +.++.+++..++.+++|++|++++|.... .....+ ..+++|+.|
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAASSDTLEHL 174 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCE--------EEGGGGGGGTTTCCEE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCc--------ccHHHHhhccCcCCEE
Confidence 999999887653 478899999998 67777776668889999999998764311 011222 356778888
Q ss_pred EeeccCCCCCCcccccCCCCeEEEEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhcccceeeecccccccc
Q 038494 698 EIQVQDAQMLPQDLVFVELPRYRICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLKLTEDIRLEELTGVQN 777 (1209)
Q Consensus 698 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 777 (1209)
+++.+.+..++.
T Consensus 175 ~L~~N~l~~~~~-------------------------------------------------------------------- 186 (317)
T 3o53_A 175 NLQYNFIYDVKG-------------------------------------------------------------------- 186 (317)
T ss_dssp ECTTSCCCEEEC--------------------------------------------------------------------
T ss_pred ECCCCcCccccc--------------------------------------------------------------------
Confidence 876654421110
Q ss_pred ccccccCCCCccCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCC
Q 038494 778 VVHELDDGEGFPRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCD 857 (1209)
Q Consensus 778 ~~~~l~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 857 (1209)
...+++|++|+++++. +..++.. ...+++|+.|++++ +.++.++.. ...+++|+.|++++++
T Consensus 187 -------~~~l~~L~~L~Ls~N~-l~~l~~~-----~~~l~~L~~L~L~~-N~l~~l~~~----~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 187 -------QVVFAKLKTLDLSSNK-LAFMGPE-----FQSAAGVTWISLRN-NKLVLIEKA----LRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -------CCCCTTCCEEECCSSC-CCEECGG-----GGGGTTCSEEECTT-SCCCEECTT----CCCCTTCCEEECTTCC
T ss_pred -------ccccccCCEEECCCCc-CCcchhh-----hcccCcccEEECcC-CcccchhhH----hhcCCCCCEEEccCCC
Confidence 1225566666666654 2222111 23467777777777 355544321 1457888888888875
Q ss_pred CccccccHHHHhhcccccEEEEeccccccc
Q 038494 858 KLKHLFSFSIARNLLRLQKVKVASCNKLEM 887 (1209)
Q Consensus 858 ~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 887 (1209)
-.... ...++..++.|+.|++.++..++.
T Consensus 249 ~~~~~-~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 249 FHCGT-LRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CBHHH-HHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ccCcC-HHHHHhccccceEEECCCchhccC
Confidence 43122 124667788888888887766544
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.53 E-value=1.3e-13 Score=154.10 Aligned_cols=180 Identities=22% Similarity=0.239 Sum_probs=142.4
Q ss_pred hhcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCc
Q 038494 516 IIQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQ 593 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~ 593 (1209)
..+.+++++.+.++.+..++.. ..+++|++|++.+|...........+..+++|++|++++|.+..+|..+..+++|+
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 3457899999999999988874 48999999999998522212112334579999999999999999999999999999
Q ss_pred EEeccCcccCCc---ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcc-cCchhhcCCCCCcEEECC
Q 038494 594 TLCLDWCQLEDV---AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVV-IAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 594 ~L~l~~~~l~~l---~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~-~~~~~l~~L~~L~~L~l~ 668 (1209)
+|++++|.++.+ ..+.++++|++|++++|.+... |..+.++++|++|++++| .+.. ..+..+..+++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECC
Confidence 999999998877 3689999999999999988854 556889999999999994 4544 334458899999999998
Q ss_pred CCCCccccccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 669 DSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 669 ~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
+|... ......+..+++|+.|+++.+.+
T Consensus 184 ~n~l~--------~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 184 QCQLE--------QLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp TSCCC--------EECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCcC--------CcCHHHhcCCCCCCEEECCCCcc
Confidence 87431 11123466778888888876654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=2.5e-13 Score=148.45 Aligned_cols=191 Identities=20% Similarity=0.311 Sum_probs=148.7
Q ss_pred CeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccccc-ccCCCCCcEEecc
Q 038494 520 GAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSS-LGHLINLQTLCLD 598 (1209)
Q Consensus 520 ~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~l~ 598 (1209)
..+.+...++.+..+|.... +++++|++.++ .+..++...|.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSN--KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSS--CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCC--CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45678888888888876543 68999999887 46677777788899999999999999888765 5789999999999
Q ss_pred CcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccc
Q 038494 599 WCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWD 675 (1209)
Q Consensus 599 ~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 675 (1209)
+|.++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|+++++....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 171 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKR- 171 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcE-
Confidence 9998887 4578899999999999988877654 68899999999998 56777877778889999999998764311
Q ss_pred cccCCCccchhhhCCCCCCCEEEeeccCCCCCCccc--ccCCCCeEEEE
Q 038494 676 KVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDL--VFVELPRYRIC 722 (1209)
Q Consensus 676 ~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 722 (1209)
.....+..+++|+.|+++.+.+..++... ...+|+.|.+.
T Consensus 172 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 172 -------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp -------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred -------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence 11123677888999999988887776542 45566666553
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=3.3e-13 Score=148.75 Aligned_cols=191 Identities=24% Similarity=0.292 Sum_probs=158.6
Q ss_pred CCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEecc
Q 038494 519 KGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLD 598 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 598 (1209)
..++.+.+.++.+..+|... .+++++|++++| .+..++...|.++++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN--LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS--CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC--cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 46788999999999888765 379999999998 46667777789999999999999999988774 899999999999
Q ss_pred CcccCCc-ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 599 WCQLEDV-AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 599 ~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
+|.++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++ +.++.++++.+..+++|+.|++++|....
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 162 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE-- 162 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC--
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc--
Confidence 9999988 778899999999999999998874 589999999999999 67888888878899999999998875321
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCCCCCCccc-ccCCCCeEEEE
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDL-VFVELPRYRIC 722 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 722 (1209)
-....+..+++|+.|+++.+.+..+|... ....|+.+.+.
T Consensus 163 ------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 163 ------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp ------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred ------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 01123577899999999999998887763 44556666553
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=1.3e-15 Score=181.78 Aligned_cols=182 Identities=16% Similarity=0.154 Sum_probs=109.9
Q ss_pred CCeEEEEccCCCCccCCC---cCCCCCccEEEeccCCCcccc--cChhhhcCCCCCcEEEecCcccccc-cccc-cCCC-
Q 038494 519 KGAIAISIPYGDIQELPE---RLECPQLKLLLLLANGDSYLE--ISHLFFEGTEDLKVLSLSGIHFSSL-SSSL-GHLI- 590 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i-~~l~- 590 (1209)
++++++.++++.+...+. ...+++|++|++.++...... .....+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 456777887776654331 125778888888877421110 1123457788888888888887642 2222 3344
Q ss_pred ---CCcEEeccCcccCC-----c-ccccCCCCCCEEEccCCCCCcc-ch----h-ccCCCCCCEEeccCCCCCcccC---
Q 038494 591 ---NLQTLCLDWCQLED-----V-AAIGQLKKLEILSFRYSDIKQL-PL----E-IGQLAQLQLLDLSNCSSLVVIA--- 652 (1209)
Q Consensus 591 ---~L~~L~l~~~~l~~-----l-~~i~~L~~L~~L~l~~~~~~~l-p~----~-i~~L~~L~~L~l~~~~~l~~~~--- 652 (1209)
+|++|++++|.+.. + ..+.++++|++|++++|.+... +. . ....++|++|++++| .++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHH
Confidence 68888888888763 2 6677888888888888877532 22 2 223567888888885 444322
Q ss_pred -chhhcCCCCCcEEECCCCCCccccccCCCccchhhhC-CCCCCCEEEeeccCCC
Q 038494 653 -PNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELK-GLSKLTTLEIQVQDAQ 705 (1209)
Q Consensus 653 -~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~-~l~~L~~L~l~~~~~~ 705 (1209)
+..+..+++|++|+++++...... .......+. ..++|+.|+++.+.+.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAG----VRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHH----HHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHhhCCCCCEEECcCCCcchHH----HHHHHHHHhcCCCCceEEEccCCCCc
Confidence 233566788888888776421100 000111121 3568888888776543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.51 E-value=2.6e-13 Score=148.28 Aligned_cols=178 Identities=24% Similarity=0.356 Sum_probs=151.8
Q ss_pred hhcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCC
Q 038494 516 IIQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINL 592 (1209)
Q Consensus 516 ~~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L 592 (1209)
..+..++++.+.++.+..++. ...+++|++|++.+| .+..++...|.++++|++|++++|.++.+|. .+..+++|
T Consensus 34 ~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN--KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS--CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC--ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 345689999999999998875 347999999999998 4678888888999999999999999998875 56899999
Q ss_pred cEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 593 QTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 593 ~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
++|++++|.++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..+.++++|++|++++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCC
Confidence 9999999999888 5589999999999999999988876 78999999999999 678888877788999999999988
Q ss_pred CCCccccccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 670 SFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 670 ~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
|.... .....+..+++|+.|+++.+..
T Consensus 191 N~l~~--------~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 191 NQLKR--------VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCSC--------CCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCCc--------CCHHHhccccCCCEEEecCCCe
Confidence 74321 1112467788999999998764
No 77
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.51 E-value=1.6e-13 Score=156.78 Aligned_cols=297 Identities=16% Similarity=0.145 Sum_probs=174.0
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc------CHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP------DVQKIQDK 230 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~------~~~~l~~~ 230 (1209)
....|+||+++++.|.+++..+ +++.|+|++|+|||||++++++.. + ++|+++.... +...++..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHHH
Confidence 3567999999999999998764 799999999999999999998764 1 6788875432 56667777
Q ss_pred HHHHhCC-----------------CCC-CCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc-----cccCCCCCCCCc
Q 038494 231 LASDLDL-----------------NFD-LNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL-----EEIGIPFGDVDE 287 (1209)
Q Consensus 231 i~~~l~~-----------------~~~-~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-----~~l~~~~~~~~~ 287 (1209)
+.+.+.. ... .........+.+.......++.+||+||++....+ ..+...+..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~--- 157 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY--- 157 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH---
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH---
Confidence 7665542 000 01122333333433333223899999999876431 111100000
Q ss_pred cccccccCCcEEEEeccchhhhcc---------cC--CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH
Q 038494 288 KDRKQDLRRRTIILTSRSKHLLTN---------DM--NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGK 356 (1209)
Q Consensus 288 ~~~~~~~~~s~ilvTtR~~~v~~~---------~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~ 356 (1209)
.....++.++|+|++....... .. .....+.+.+|+.+|+.+++.......... -..+.+.+|++.
T Consensus 158 --~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~ 234 (350)
T 2qen_A 158 --AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVEL 234 (350)
T ss_dssp --HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHH
T ss_pred --HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Confidence 0001146789999876532110 01 123589999999999999998765322111 224678899999
Q ss_pred hCCChhHHHHHHHHHhc-CChhHH-HHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhcccCcCcccc
Q 038494 357 CGGLPVALSTVANALKN-KKLPVW-KDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTLFGEGTPIQ 434 (1209)
Q Consensus 357 ~~glPLai~~~~~~l~~-~~~~~w-~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~ 434 (1209)
++|+|+++..++..+.. .+...+ ..+.+..... ....+.. +.+ + ++. .+..+..+|. . .++
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~---l~~-~-~~~-~~~~l~~la~-g---~~~ 297 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL-------IMGELEE---LRR-R-SPR-YVDILRAIAL-G---YNR 297 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHH---HHH-H-CHH-HHHHHHHHHT-T---CCS
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-------HHHHHHH---HHh-C-Chh-HHHHHHHHHh-C---CCC
Confidence 99999999999876432 222221 1111111000 0011111 011 2 555 7888888887 2 245
Q ss_pred HHHHHHhhhhhccccccHHHHHHHHHHHHHHHHhcccccCCCCCCceEe-hhHHHHHHH
Q 038494 435 VASLLRYGKGLFKNVRTLENARNRVDALIDNLKASCLLLDGDAEDEVKM-HDVIHVVAV 492 (1209)
Q Consensus 435 ~~~li~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~m-Hdlv~~~~~ 492 (1209)
...+.........+ .. ...+..+++.|++.+++... .+.|.+ |++++++.+
T Consensus 298 ~~~l~~~~~~~~~~-~~----~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKGTK-IP----EPRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTTCC-CC----HHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CC----HHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 45554332110000 11 23345678889999999764 245655 888888753
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=4.2e-13 Score=149.57 Aligned_cols=152 Identities=24% Similarity=0.339 Sum_probs=124.5
Q ss_pred cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCE
Q 038494 537 RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEI 616 (1209)
Q Consensus 537 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~ 616 (1209)
...+++|++|++.++. +..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.+..+..+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~--i~~l~--~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG--VTTIE--GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSC--CCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCC--ccCch--hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCE
Confidence 3467899999998873 45554 26789999999999999998888 9999999999999999988888999999999
Q ss_pred EEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCE
Q 038494 617 LSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTT 696 (1209)
Q Consensus 617 L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~ 696 (1209)
|++++|.++.+|. +.++++|++|++++ +.++.+++ ++.+++|++|++++|... .+..+..+++|+.
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~----------~~~~l~~l~~L~~ 177 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVS----------DLTPLANLSKLTT 177 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCC----------CCGGGTTCTTCCE
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCC----------CChhhcCCCCCCE
Confidence 9999999988875 89999999999998 56777655 788999999999876431 1223778888999
Q ss_pred EEeeccCCCCC
Q 038494 697 LEIQVQDAQML 707 (1209)
Q Consensus 697 L~l~~~~~~~~ 707 (1209)
|+++.+.+..+
T Consensus 178 L~l~~n~l~~~ 188 (308)
T 1h6u_A 178 LKADDNKISDI 188 (308)
T ss_dssp EECCSSCCCCC
T ss_pred EECCCCccCcC
Confidence 99887765433
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.48 E-value=5.2e-13 Score=156.37 Aligned_cols=310 Identities=13% Similarity=0.063 Sum_probs=180.0
Q ss_pred cchhhHHHHHHHHHHHH-h----C--CCceEEEE--EcCCCChHHHHHHHHHHHHhhc---ccCC-EEEEEEcCCCcCHH
Q 038494 159 EAFDSRMKLFQDVVEAL-R----N--DKLNIIGV--HGMGGVGKTTLVKQIAKQVMED---KVFD-KVVMAEVTENPDVQ 225 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~~GiGKTtLa~~~~~~~~~~---~~f~-~~~wv~~s~~~~~~ 225 (1209)
..|+||+++++.+.+++ . . .....+.| +|++|+||||||+++++..... ..|+ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999988 4 2 24567777 9999999999999999887542 1233 46888887778899
Q ss_pred HHHHHHHHHhCCCCCCC-CChHHHHHHHHHHHh-cCCeEEEEEeCCCcccC--------ccccCCCCCCCCcccccccc-
Q 038494 226 KIQDKLASDLDLNFDLN-DSKPHRAKQLCQRLT-KEKRVLIILDNIWKKLG--------LEEIGIPFGDVDEKDRKQDL- 294 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~~--------~~~l~~~~~~~~~~~~~~~~- 294 (1209)
.++..+++.++...... .........+.+.+. .+++++||+||++.... +..+...+.... ...
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~-----~~~~ 176 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP-----SRDG 176 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC-----CTTS
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc-----cCCC
Confidence 99999999987653321 222344555555554 35799999999987532 111111110000 000
Q ss_pred -CCcEEEEeccchhhhcc-------c-CCcceEEEcCCCCHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHhC------
Q 038494 295 -RRRTIILTSRSKHLLTN-------D-MNSQKIFLIEVLSKEEALQFFEKIVGN-SAKASAFQPLADEIVGKCG------ 358 (1209)
Q Consensus 295 -~~s~ilvTtR~~~v~~~-------~-~~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~------ 358 (1209)
.+..+|+||+...+... . ......+.+++++.++++++|...+.. .....-..+.+..|++.++
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 23447778875542210 0 011223999999999999999866431 0111223567889999999
Q ss_pred CChhHHHHHHHHH---h---cC---ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhcccC-
Q 038494 359 GLPVALSTVANAL---K---NK---KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTLFG- 428 (1209)
Q Consensus 359 glPLai~~~~~~l---~---~~---~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp- 428 (1209)
|.|..+..+.... . +. +.+.+..+...... ...+.-.+..||++ .+.++..++.+.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~ 322 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATL 322 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHh
Confidence 9997655554322 1 11 22333333332110 22344567889987 788888888653
Q ss_pred -cCccccHHHHHHhhhhhc-cccccHHHHHHHHHHHHHHHHhcccccCC----CCCCceEehhHH
Q 038494 429 -EGTPIQVASLLRYGKGLF-KNVRTLENARNRVDALIDNLKASCLLLDG----DAEDEVKMHDVI 487 (1209)
Q Consensus 429 -~~~~i~~~~li~~~~g~i-~~~~~~~~~~~~~~~~~~~L~~~~ll~~~----~~~~~~~mHdlv 487 (1209)
.+..++...+...+..+. ............+.++++.|+..+++... +..++|++|++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 323 GGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp TTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 223555544433221111 00000000123455678889999998642 234456666554
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=6.6e-14 Score=166.50 Aligned_cols=148 Identities=20% Similarity=0.126 Sum_probs=96.2
Q ss_pred CCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEc
Q 038494 540 CPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSF 619 (1209)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l 619 (1209)
+++|++|++++| .+..+++..|.++++|++|+|++|.++.+++ ++.+++|++|++++|.++.+. ..++|++|++
T Consensus 33 ~~~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGN--PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSS--CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred CCCccEEEeeCC--cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEEC
Confidence 457777777776 3555665666777778888888777776554 777777888888777765542 2367777788
Q ss_pred cCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhC-CCCCCCEEE
Q 038494 620 RYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELK-GLSKLTTLE 698 (1209)
Q Consensus 620 ~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~-~l~~L~~L~ 698 (1209)
++|.+..+|. ..+++|++|++++ +.++..++..++++++|++|++++|.... .....+. .+++|+.|+
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDT--------VNFAELAASSDTLEHLN 175 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCE--------EEGGGGGGGTTTCCEEE
T ss_pred cCCcCCCCCc--cccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCC--------cChHHHhhhCCcccEEe
Confidence 7777776654 3467777777777 45666655556777777777777654211 0122232 456667766
Q ss_pred eeccCC
Q 038494 699 IQVQDA 704 (1209)
Q Consensus 699 l~~~~~ 704 (1209)
++.+.+
T Consensus 176 Ls~N~l 181 (487)
T 3oja_A 176 LQYNFI 181 (487)
T ss_dssp CTTSCC
T ss_pred cCCCcc
Confidence 665443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=6.2e-13 Score=143.58 Aligned_cols=174 Identities=22% Similarity=0.302 Sum_probs=144.7
Q ss_pred CeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEecc
Q 038494 520 GAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLD 598 (1209)
Q Consensus 520 ~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~ 598 (1209)
..+++...++.+..+|.... ++++.|++.++ .+..++...|.++++|++|+|++|.++.++. .+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQST--GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCC--CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678888888988887654 78999999998 4666777778999999999999999997755 58999999999999
Q ss_pred CcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccc
Q 038494 599 WCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWD 675 (1209)
Q Consensus 599 ~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~ 675 (1209)
+|.++.+ ..+..+++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..++.+++|++|++++|....
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 169 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQS- 169 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSC-
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCc-
Confidence 9999887 5678999999999999999988876 58899999999999 67888888778999999999998875321
Q ss_pred cccCCCccchhhhCCCCCCCEEEeeccCCC
Q 038494 676 KVEGGSNASLAELKGLSKLTTLEIQVQDAQ 705 (1209)
Q Consensus 676 ~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~ 705 (1209)
.....+..+++|+.|+++.+...
T Consensus 170 -------~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 170 -------VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -------CCTTTTTTCTTCCEEECCSCCBC
T ss_pred -------cCHHHHhCCCCCCEEEeeCCcee
Confidence 11234677889999999887653
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=3.6e-13 Score=147.96 Aligned_cols=194 Identities=20% Similarity=0.262 Sum_probs=147.9
Q ss_pred hcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccc-ccccCCCCCc
Q 038494 517 IQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLINLQ 593 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~L~ 593 (1209)
.+..++++.++++.+..++. ...+++|++|++.+| .+..++...|.++++|++|++++|.++.++ ..+.++.+|+
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC--EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC--cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 45678999999998887764 347889999999888 466777777888999999999999988765 5788999999
Q ss_pred EEeccCcccCCc--ccccCCCCCCEEEccCCCCCc--cchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCc----EE
Q 038494 594 TLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQ--LPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLE----EL 665 (1209)
Q Consensus 594 ~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~----~L 665 (1209)
+|++++|.+..+ ..++++++|++|++++|.+.. +|..+.++++|++|++++ +.++.+++..+..+.+|+ +|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccccceee
Confidence 999999998877 368899999999999998875 678899999999999998 567777666566666666 78
Q ss_pred ECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCccc--ccCCCCeEEEE
Q 038494 666 YMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDL--VFVELPRYRIC 722 (1209)
Q Consensus 666 ~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~ 722 (1209)
+++++.... .....-...+|+.|+++.+.+..++... ...+|+.|.+.
T Consensus 183 ~ls~n~l~~---------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 183 DLSLNPMNF---------IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp ECCSSCCCE---------ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred ecCCCcccc---------cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 887764321 1112223347889999988887776652 45666666653
No 83
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.47 E-value=3e-13 Score=155.14 Aligned_cols=292 Identities=14% Similarity=0.132 Sum_probs=168.3
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-----cCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-----PDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-----~~~~~l~~~i 231 (1209)
....|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++.... ..+|+++... .+....+..+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 35679999999999999 755 69999999999999999999987642 2578887642 3444555554
Q ss_pred HHHhC--------------C----CCCC---C-CC---hHHHHHHHHHHHhc-C-CeEEEEEeCCCcccC-----ccccC
Q 038494 232 ASDLD--------------L----NFDL---N-DS---KPHRAKQLCQRLTK-E-KRVLIILDNIWKKLG-----LEEIG 279 (1209)
Q Consensus 232 ~~~l~--------------~----~~~~---~-~~---~~~~~~~l~~~l~~-~-k~~LlvlDdv~~~~~-----~~~l~ 279 (1209)
.+.+. . .... . .. .......+.+.+.+ . ++++||+||++.... +..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 44331 0 0000 0 00 00122334444432 1 489999999987532 11111
Q ss_pred CCCCCCCccccccccCCcEEEEeccchhhhcc---------cC-Cc-ceEEEcCCCCHHHHHHHHHHHhCC-CCCCCcch
Q 038494 280 IPFGDVDEKDRKQDLRRRTIILTSRSKHLLTN---------DM-NS-QKIFLIEVLSKEEALQFFEKIVGN-SAKASAFQ 347 (1209)
Q Consensus 280 ~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~---------~~-~~-~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~ 347 (1209)
..+.+ ...+.++|+|+|....... .. +. ...+.+.+|+.+|+.+++...+.. .....+
T Consensus 162 ~~~~~--------~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-- 231 (357)
T 2fna_A 162 AYAYD--------NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-- 231 (357)
T ss_dssp HHHHH--------HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC--
T ss_pred HHHHH--------cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc--
Confidence 11100 1146789999987542110 01 12 368999999999999999876531 111111
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhc-CChhHHHH-HHHHHhcCCCccccCccccceeeeEEec--ccCCchhHHHHHHH
Q 038494 348 PLADEIVGKCGGLPVALSTVANALKN-KKLPVWKD-ALTQLRNSNPREIHGMDANVCSSIELSY--NFLESDEAKSLFLL 423 (1209)
Q Consensus 348 ~~~~~i~~~~~glPLai~~~~~~l~~-~~~~~w~~-~~~~l~~~~~~~~~~~~~~v~~~l~~sy--~~L~~~~~k~c~~~ 423 (1209)
. .+|++.++|+|+++..++..+.. .+...|.. +.+..... ....+.. +.+ ..+++. .+..+..
T Consensus 232 -~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~---~~~~~~~l~~~-~~~~l~~ 298 (357)
T 2fna_A 232 -Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL-------ILKEFEN---FLHGREIARKR-YLNIMRT 298 (357)
T ss_dssp -H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHH---HHTTCGGGHHH-HHHHHHH
T ss_pred -H-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH-------HHHHHHH---HhhccccccHH-HHHHHHH
Confidence 1 79999999999999999877642 23333311 11110000 0001100 011 157776 8899999
Q ss_pred hcccCcCccccHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHhcccccCCCCCCceE-ehhHHHHHH
Q 038494 424 CTLFGEGTPIQVASLLRYGKGLFKNVRTLENARNRVDALIDNLKASCLLLDGDAEDEVK-MHDVIHVVA 491 (1209)
Q Consensus 424 ~s~fp~~~~i~~~~li~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~~~~ 491 (1209)
+|. . . +...+............. ...+..+++.|++.+++...+ ..|. -|++++++.
T Consensus 299 la~-g---~-~~~~l~~~~~~~~g~~~~----~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 299 LSK-C---G-KWSDVKRALELEEGIEIS----DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp HTT-C---B-CHHHHHHHHHHHHCSCCC----HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred HHc-C---C-CHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 887 2 2 444443221100000001 233456788899999997642 4576 588988864
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=6.2e-13 Score=146.72 Aligned_cols=171 Identities=25% Similarity=0.358 Sum_probs=144.8
Q ss_pred cCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEec
Q 038494 518 QKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCL 597 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l 597 (1209)
..+++.+.+.++.+..++....+++|++|++++|. +..++. +.++++|++|++++|.++.+|. +..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~--l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK--LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCc--cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 45789999999999888877789999999999884 555555 7899999999999999998775 899999999999
Q ss_pred cCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccc
Q 038494 598 DWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKV 677 (1209)
Q Consensus 598 ~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 677 (1209)
++|.++.+..+..+++|++|++++|.++.+ ..+.++++|++|++++ +.++.+++ +..+++|++|++++|...
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCC----
Confidence 999999888899999999999999999888 5789999999999999 56777765 889999999999887431
Q ss_pred cCCCccchhhhCCCCCCCEEEeeccCCCCC
Q 038494 678 EGGSNASLAELKGLSKLTTLEIQVQDAQML 707 (1209)
Q Consensus 678 ~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~ 707 (1209)
.+..+..+++|+.|+++.+.+...
T Consensus 192 ------~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 ------DLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ------BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred ------CChhhccCCCCCEEECcCCcccCC
Confidence 134578889999999988765443
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.47 E-value=1e-12 Score=144.37 Aligned_cols=171 Identities=22% Similarity=0.262 Sum_probs=128.2
Q ss_pred ccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCC
Q 038494 526 IPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLED 604 (1209)
Q Consensus 526 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~ 604 (1209)
-.+..+..+|... .+++++|+++++ .+..++...|.++++|++|++++|.++.++. .+..+++|++|++++|.++.
T Consensus 14 c~~~~l~~ip~~l-~~~l~~L~ls~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 14 CMELNFYKIPDNL-PFSTKNLDLSFN--PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp CTTSCCSSCCSSS-CTTCCEEECTTC--CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCccccCCCC-CCCccEEECCCC--cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 3444556666644 267999999888 4666777677889999999999999987765 78899999999999999887
Q ss_pred c--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccC-chhhcCCCCCcEEECCCCCCccccccCC
Q 038494 605 V--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIA-PNVISKFSRLEELYMGDSFPQWDKVEGG 680 (1209)
Q Consensus 605 l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 680 (1209)
+ ..+.++++|++|++++|.+..++. .++++++|++|++++ +.+..+. +..++++++|++|++++|... ..
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-----~~ 164 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-----SI 164 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCC-----EE
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchhhccCCCCCEEECCCCCCC-----cC
Confidence 7 568899999999999998887765 588899999999998 5565532 445888999999999877431 11
Q ss_pred CccchhhhCCCCCCC-EEEeeccCCC
Q 038494 681 SNASLAELKGLSKLT-TLEIQVQDAQ 705 (1209)
Q Consensus 681 ~~~~l~~L~~l~~L~-~L~l~~~~~~ 705 (1209)
....+..+..++.|. .|+++.+.+.
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred CHHHhhhhhhccccceeeecCCCccc
Confidence 223345555666555 6777666544
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.47 E-value=3.3e-13 Score=144.61 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=107.1
Q ss_pred CccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcc-cccccc-cccCCCCCcEEeccC-cccCCc--
Q 038494 531 IQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIH-FSSLSS-SLGHLINLQTLCLDW-CQLEDV-- 605 (1209)
Q Consensus 531 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~-~i~~l~~L~~L~l~~-~~l~~l-- 605 (1209)
+..+|. -.+++++|++.++ .+..++...|.++++|++|++++|. ++.+|. .+..+++|++|++++ |.++.+
T Consensus 23 l~~ip~--~~~~l~~L~l~~n--~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET--HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC--CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCC--cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 566666 3458888888887 4667777778888899999999886 887765 688888999999988 788777
Q ss_pred ccccCCCCCCEEEccCCCCCccchhccCCCCCC---EEeccCCCCCcccCchhhcCCCCCc-EEECCCC
Q 038494 606 AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQ---LLDLSNCSSLVVIAPNVISKFSRLE-ELYMGDS 670 (1209)
Q Consensus 606 ~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~---~L~l~~~~~l~~~~~~~l~~L~~L~-~L~l~~~ 670 (1209)
..+.++++|++|++++|.++.+|. +..+++|+ +|+++++..++.+++..+..+++|+ +|+++++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 467888889999998888888876 77888887 8888885477777776677788888 8877665
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=3.7e-13 Score=144.19 Aligned_cols=193 Identities=12% Similarity=0.210 Sum_probs=160.3
Q ss_pred hcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecC-cccccccc-cccCCCCC
Q 038494 517 IQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSG-IHFSSLSS-SLGHLINL 592 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp~-~i~~l~~L 592 (1209)
.+..++++.+.++.+..++.. ..+++|++|++.+|. .+..++...|.++++|++|++++ |.++.+|. .+..+++|
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 566899999999999988763 379999999999983 26778887889999999999998 99998874 78999999
Q ss_pred cEEeccCcccCCcccccCCCCCC---EEEccCC-CCCccchh-ccCCCCCC-EEeccCCCCCcccCchhhcCCCCCcEEE
Q 038494 593 QTLCLDWCQLEDVAAIGQLKKLE---ILSFRYS-DIKQLPLE-IGQLAQLQ-LLDLSNCSSLVVIAPNVISKFSRLEELY 666 (1209)
Q Consensus 593 ~~L~l~~~~l~~l~~i~~L~~L~---~L~l~~~-~~~~lp~~-i~~L~~L~-~L~l~~~~~l~~~~~~~l~~L~~L~~L~ 666 (1209)
++|++++|.++.++.++.+.+|+ +|++++| .++.+|.. +.++++|+ +|++++ +.++.++...+.. ++|++|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CCCCEEE
Confidence 99999999999886688888888 9999999 99988765 88999999 999998 6777888765555 8999999
Q ss_pred CCCCC-CccccccCCCccchhhhCCC-CCCCEEEeeccCCCCCCcccccCCCCeEEE
Q 038494 667 MGDSF-PQWDKVEGGSNASLAELKGL-SKLTTLEIQVQDAQMLPQDLVFVELPRYRI 721 (1209)
Q Consensus 667 l~~~~-~~~~~~~~~~~~~l~~L~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 721 (1209)
+++|. ... -....+..+ ++|+.|+++.+.+..++.. .+.+|+.|.+
T Consensus 186 L~~n~~l~~--------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 186 LNKNKYLTV--------IDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp CTTCTTCCE--------ECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred cCCCCCccc--------CCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 98872 211 012346677 8999999999998887765 6677777764
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.46 E-value=1.1e-12 Score=143.38 Aligned_cols=175 Identities=23% Similarity=0.280 Sum_probs=141.7
Q ss_pred hcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEE
Q 038494 517 IQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTL 595 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L 595 (1209)
....++.+.+.++.+..++....+++|++|++.+|. +..++ .+.++++|++|++++|.++.+|. .++.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~--l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK--LHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC--CCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCC--CCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 356788999999988888877789999999999884 44443 46889999999999999998766 46899999999
Q ss_pred eccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCC
Q 038494 596 CLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFP 672 (1209)
Q Consensus 596 ~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 672 (1209)
++++|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++ +.++.+++..++.+++|++|++++|..
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcC
Confidence 9999998887 4478999999999999999988765 58899999999999 567788777678899999999988743
Q ss_pred ccccccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 673 QWDKVEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 673 ~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
.. .....+..+++|+.|+++.+..
T Consensus 194 ~~--------~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 194 KS--------VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SC--------CCTTTTTTCTTCCEEECCSSCB
T ss_pred Cc--------cCHHHHhCCcCCCEEEccCCCc
Confidence 11 1123467788999999887654
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.43 E-value=1.2e-12 Score=144.28 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=147.8
Q ss_pred hcCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcE
Q 038494 517 IQKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQT 594 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 594 (1209)
++..++.+.+.++.+..++. ...+++|++|++.+|. +..++.. ..+++|++|++++|.++.+|..+..+++|++
T Consensus 29 ~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 29 LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104 (290)
T ss_dssp CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--CCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCE
T ss_pred CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--cCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCE
Confidence 45789999999999887753 3478999999999984 5555543 6899999999999999999999999999999
Q ss_pred EeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 595 LCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 595 L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
|++++|.++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..+.++++|++|++++|.
T Consensus 105 L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCc
Confidence 99999999988 5689999999999999999988766 57899999999999 67888988878899999999999875
Q ss_pred CccccccCCCccchhhhCCCCCCCEEEeeccCC
Q 038494 672 PQWDKVEGGSNASLAELKGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 672 ~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~ 704 (1209)
.. .....+..+.+|+.|.++++..
T Consensus 184 l~---------~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 184 LY---------TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CC---------CCCTTTTTTCCCSEEECCSCCB
T ss_pred CC---------ccChhhcccccCCeEEeCCCCc
Confidence 32 2233455667899999988765
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.42 E-value=2.1e-13 Score=152.50 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=99.7
Q ss_pred CCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc--ccccccc-------CCCCCcEEeccCcccCCc--ccc
Q 038494 540 CPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS--SLSSSLG-------HLINLQTLCLDWCQLEDV--AAI 608 (1209)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~l~~L~~L~l~~~~l~~l--~~i 608 (1209)
.++|+.|++.++. . .+|..+... |++|+++++.+. .+|..+. ++.+|++|++++|.++.. ..+
T Consensus 42 ~~~L~~l~l~~n~--l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 42 GRSLEYLLKRVDT--E-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEECTTHHHHCCT--T-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred CCCceeEeecccc--c-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3456666666664 2 556554332 777778777775 3565555 678888888888887643 443
Q ss_pred --cCCCCCCEEEccCCCCCccchhccCC-----CCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCC
Q 038494 609 --GQLKKLEILSFRYSDIKQLPLEIGQL-----AQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGS 681 (1209)
Q Consensus 609 --~~L~~L~~L~l~~~~~~~lp~~i~~L-----~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 681 (1209)
+.+++|++|++++|.++.+|..++.+ ++|++|++++ +.+..+++..++++++|++|++++|.... .
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------~ 188 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELG------E 188 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCCEEECCSCTTCH------H
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCCEEECCCCCcCc------c
Confidence 77888888888888877777666666 7888888887 56666766667788888888887763210 0
Q ss_pred ccchhhh--CCCCCCCEEEeeccCC
Q 038494 682 NASLAEL--KGLSKLTTLEIQVQDA 704 (1209)
Q Consensus 682 ~~~l~~L--~~l~~L~~L~l~~~~~ 704 (1209)
...+..+ ..+++|+.|+++.+.+
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l 213 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGM 213 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCC
T ss_pred hHHHHHHHhccCCCCCEEECCCCcC
Confidence 0112233 6677778777766544
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=2.1e-12 Score=139.35 Aligned_cols=152 Identities=22% Similarity=0.324 Sum_probs=135.0
Q ss_pred hcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCc
Q 038494 517 IQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQ 593 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~ 593 (1209)
++..++++.+.++.+..++.. ..+++|++|++++| .+..++...|.++++|++|++++|.++.+|. .+..+++|+
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN--QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLD 110 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC--cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCC
Confidence 457899999999999887653 47899999999998 4667778888999999999999999998875 678999999
Q ss_pred EEeccCcccCCc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 594 TLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 594 ~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
+|++++|.++.+ ..+.++++|++|++++|.++.+|. .++++++|++|++++ +.++.+++..+.++++|++|++++|
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 999999999988 447899999999999999998887 589999999999999 6788888877899999999999887
Q ss_pred C
Q 038494 671 F 671 (1209)
Q Consensus 671 ~ 671 (1209)
.
T Consensus 190 ~ 190 (251)
T 3m19_A 190 Q 190 (251)
T ss_dssp C
T ss_pred c
Confidence 4
No 92
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.39 E-value=3.2e-12 Score=135.50 Aligned_cols=146 Identities=22% Similarity=0.279 Sum_probs=122.5
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCc
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWC 600 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~ 600 (1209)
..+...++.+..+|... .++|++|++++| .+..++...|.++++|++|+|++|.++.+|. .+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDN--QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCC--ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45777777788888655 388999999988 4666767778899999999999999998875 4688999999999999
Q ss_pred ccCCc--ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 601 QLEDV--AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 601 ~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
.++.+ ..+..+++|++|++++|.++.+|..+.++++|++|++++ +.++.+++..+..+++|+.|++.+|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 98888 447889999999999999999999999999999999998 67888877778888889988887763
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=4.1e-12 Score=140.11 Aligned_cols=178 Identities=22% Similarity=0.295 Sum_probs=146.3
Q ss_pred CCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCccc
Q 038494 528 YGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAA 607 (1209)
Q Consensus 528 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~ 607 (1209)
...+..+.....+++|++|++.++. +..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++.
T Consensus 33 ~~~~~~~~~~~~l~~L~~L~l~~~~--i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~ 107 (291)
T 1h6t_A 33 KKSVTDAVTQNELNSIDQIIANNSD--IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS 107 (291)
T ss_dssp CSCTTSEECHHHHHTCCEEECTTSC--CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG
T ss_pred CCCcccccchhhcCcccEEEccCCC--cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh
Confidence 3344444444468999999999884 555543 6889999999999999999887 9999999999999999999988
Q ss_pred ccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhh
Q 038494 608 IGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAE 687 (1209)
Q Consensus 608 i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 687 (1209)
+..+++|++|++++|.++.++ .+..+++|++|++++ +.++.++ .++.+++|++|++++|... . +..
T Consensus 108 l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~L~~N~l~---------~-~~~ 173 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDIT--VLSRLTKLDTLSLEDNQIS---------D-IVP 173 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCSSCCC---------C-CGG
T ss_pred hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcch--hhccCCCCCEEEccCCccc---------c-chh
Confidence 999999999999999999874 689999999999999 5677663 3889999999999887431 1 122
Q ss_pred hCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEc
Q 038494 688 LKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIG 724 (1209)
Q Consensus 688 L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 724 (1209)
+..+++|+.|+++.+.+..++.-..+.+|+.|.+...
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 7889999999999999888766557778888887644
No 94
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=1.2e-12 Score=146.39 Aligned_cols=106 Identities=22% Similarity=0.276 Sum_probs=53.0
Q ss_pred CCCCCcEEEecCcccc-cccccc--cCCCCCcEEeccCcccCCc-ccccCC-----CCCCEEEccCCCCCccc-hhccCC
Q 038494 565 GTEDLKVLSLSGIHFS-SLSSSL--GHLINLQTLCLDWCQLEDV-AAIGQL-----KKLEILSFRYSDIKQLP-LEIGQL 634 (1209)
Q Consensus 565 ~l~~Lr~L~L~~~~i~-~lp~~i--~~l~~L~~L~l~~~~l~~l-~~i~~L-----~~L~~L~l~~~~~~~lp-~~i~~L 634 (1209)
++++|++|++++|.++ .+|..+ +.+++|++|++++|.++.. ..++.+ ++|++|++++|.+..+| ..++++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4555555555555555 345443 5555555555555555444 333333 55555555555555444 445555
Q ss_pred CCCCEEeccCCCCCcc--cCch-hhcCCCCCcEEECCCC
Q 038494 635 AQLQLLDLSNCSSLVV--IAPN-VISKFSRLEELYMGDS 670 (1209)
Q Consensus 635 ~~L~~L~l~~~~~l~~--~~~~-~l~~L~~L~~L~l~~~ 670 (1209)
++|++|++++|..... .+.. .++++++|++|++++|
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N 211 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC
Confidence 5555555555321111 1111 0145555555555554
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=3.1e-12 Score=139.81 Aligned_cols=154 Identities=22% Similarity=0.335 Sum_probs=135.7
Q ss_pred hhhcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCc
Q 038494 515 KIIQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQ 593 (1209)
Q Consensus 515 ~~~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~ 593 (1209)
......++++.+.++.+..++....+++|++|++.+| .+..++...|.++++|++|++++|.++.+|. .++.+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN--QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS--CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC--ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 3446789999999999988876678999999999998 4667888888999999999999999998876 479999999
Q ss_pred EEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 594 TLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 594 ~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
+|++++|.++.+ ..++++++|++|++++|.++.+|.. ++++++|++|++++ +.+..+++..++++++|+.|++++|
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC-CcCCccCHHHHhCCcCCCEEEccCC
Confidence 999999999888 4478999999999999999988765 68999999999999 5788888877899999999999886
Q ss_pred C
Q 038494 671 F 671 (1209)
Q Consensus 671 ~ 671 (1209)
.
T Consensus 216 ~ 216 (272)
T 3rfs_A 216 P 216 (272)
T ss_dssp C
T ss_pred C
Confidence 3
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=3.2e-12 Score=134.50 Aligned_cols=146 Identities=21% Similarity=0.254 Sum_probs=113.7
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCc
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWC 600 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~ 600 (1209)
+.+...++.+..+|.... ++++.|++.+| .+..++...|..+++|++|+|++|.++.+ |..|..+.+|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n--~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQN--TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSS--CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCC--cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 356667777777776543 68888888887 46667777778888888888888888866 667888888888888888
Q ss_pred ccCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 601 QLEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 601 ~l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
.++.+ ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 88877 3467888888888888888876 45678888888888888 66777777667778888888887653
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=2.5e-12 Score=155.74 Aligned_cols=172 Identities=24% Similarity=0.353 Sum_probs=146.5
Q ss_pred hcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 517 IQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
....++.+.+.++.+..++....+++|+.|++++|. +..+++ +..+++|+.|+|++|.+..+| .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK--LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC--CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC--CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 345788899999999988877789999999999984 555555 689999999999999999887 689999999999
Q ss_pred ccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccc
Q 038494 597 LDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDK 676 (1209)
Q Consensus 597 l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 676 (1209)
|++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|++|++++ +.+..+++ +..+++|+.|++++|.+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~--- 188 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHIS--- 188 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCC---
Confidence 9999999998899999999999999999988 5789999999999999 56777765 889999999999887431
Q ss_pred ccCCCccchhhhCCCCCCCEEEeeccCCCCC
Q 038494 677 VEGGSNASLAELKGLSKLTTLEIQVQDAQML 707 (1209)
Q Consensus 677 ~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~ 707 (1209)
.+..+..+++|+.|+++.+.+...
T Consensus 189 -------~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 -------DLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -------BCGGGTTCTTCSEEECCSEEEECC
T ss_pred -------CChHHccCCCCCEEEccCCcCcCC
Confidence 134688899999999988766443
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=6.3e-12 Score=132.23 Aligned_cols=146 Identities=17% Similarity=0.263 Sum_probs=110.0
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCccccc-ChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccC
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEI-SHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDW 599 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~ 599 (1209)
+.+.++++.+..+|... .+.++.|++.+|. +..+ +...|.++++|++|+|++|.++.++. .+..+.+|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777788887777644 3566788888773 4444 34556788888888888888887765 688888888888888
Q ss_pred cccCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 600 CQLEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 600 ~~l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
|.++.+ ..+.++++|++|++++|.++.+ |..+.++++|++|++++ +.++.+++..+..+++|++|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 888777 4478888888888888888866 55678888888888888 56777766667778888888877653
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=2.1e-12 Score=146.51 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=80.8
Q ss_pred hcCC--CCCcEEEecCcccccccccccCCCCCcEEeccCcccCC--c-ccccCCCCCCEEEccCCCCC-ccchhccCCCC
Q 038494 563 FEGT--EDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLED--V-AAIGQLKKLEILSFRYSDIK-QLPLEIGQLAQ 636 (1209)
Q Consensus 563 ~~~l--~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~--l-~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~ 636 (1209)
+..+ +.+++|+++++.+...+..+..+.+|++|++++|.+.. + ..+..+++|++|++++|.+. ..|..+.++++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 3444 67777777777776665556677777777777777653 3 45667777777777777666 45666777777
Q ss_pred CCEEeccCCCCCccc-CchhhcCCCCCcEEECCCC-CCccccccCCCccchhhhCCCC-CCCEEEeec
Q 038494 637 LQLLDLSNCSSLVVI-APNVISKFSRLEELYMGDS-FPQWDKVEGGSNASLAELKGLS-KLTTLEIQV 701 (1209)
Q Consensus 637 L~~L~l~~~~~l~~~-~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~l~~L~~l~-~L~~L~l~~ 701 (1209)
|++|++++|..++.. .+..+.++++|++|++++| ... .......+..++ +|+.|++++
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~-------~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT-------EKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC-------HHHHHHHHHHSCTTCCEEECCS
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC-------hHHHHHHHHhcccCCCEEEeCC
Confidence 777777776455431 1223566777777777665 211 011123345555 666666654
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.33 E-value=2e-12 Score=146.79 Aligned_cols=250 Identities=17% Similarity=0.111 Sum_probs=165.8
Q ss_pred CCCcEEEecCcccccccccccCC--CCCcEEeccCcccCCc-ccccCCCCCCEEEccCCCCCc--cchhccCCCCCCEEe
Q 038494 567 EDLKVLSLSGIHFSSLSSSLGHL--INLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQ--LPLEIGQLAQLQLLD 641 (1209)
Q Consensus 567 ~~Lr~L~L~~~~i~~lp~~i~~l--~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L~~L~ 641 (1209)
..++.++++++.+. |..+..+ .++++|++++|.+... ..+.++++|++|++++|.+.. +|..+.++++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 34788999988776 5667777 8999999999998877 778899999999999998773 788899999999999
Q ss_pred ccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeecc-CCCCCCcccccCCCCeEE
Q 038494 642 LSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQ-DAQMLPQDLVFVELPRYR 720 (1209)
Q Consensus 642 l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~ 720 (1209)
+++| .+....+..++++++|++|++++|.. . ........+..+++|+.|+++++ .+..
T Consensus 125 L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~----l--~~~~l~~~~~~~~~L~~L~l~~~~~l~~-------------- 183 (336)
T 2ast_B 125 LEGL-RLSDPIVNTLAKNSNLVRLNLSGCSG----F--SEFALQTLLSSCSRLDELNLSWCFDFTE-------------- 183 (336)
T ss_dssp CTTC-BCCHHHHHHHTTCTTCSEEECTTCBS----C--CHHHHHHHHHHCTTCCEEECCCCTTCCH--------------
T ss_pred CcCc-ccCHHHHHHHhcCCCCCEEECCCCCC----C--CHHHHHHHHhcCCCCCEEcCCCCCCcCh--------------
Confidence 9996 45544445588999999999988721 0 11112334677889999999776 3321
Q ss_pred EEEcccCccccCCCCCccEEEEecCCCcchhhhHHHHHHHhc-ccceeeecccc-ccc--cccccccCCCCccCCcEEEE
Q 038494 721 ICIGEAWGIWRANSETSRLVQLHGLENVSTLLENYGMKMLLK-LTEDIRLEELT-GVQ--NVVHELDDGEGFPRLKHLWV 796 (1209)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~--~~~~~l~~~~~l~~L~~L~l 796 (1209)
.........++ +|+.|++.++. ... .+... +..+++|++|++
T Consensus 184 -------------------------------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~L~~L~l 229 (336)
T 2ast_B 184 -------------------------------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDL 229 (336)
T ss_dssp -------------------------------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEEC
T ss_pred -------------------------------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH---HhhCCCCCEEeC
Confidence 00111222345 67777776653 121 11111 346788999999
Q ss_pred ecccCceeeeccCCccccccCCcccEEecccccccchhcccccccccccCCccEEEEecCCCccccccHHHHhhc-cccc
Q 038494 797 ERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLREDQFFSNLKIIEVESCDKLKHLFSFSIARNL-LRLQ 875 (1209)
Q Consensus 797 ~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~ 875 (1209)
++|..+... .......+++|+.|++++|..+..... .....+++|+.|++++| +..- .+..+ .+|+
T Consensus 230 ~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~l~~~~~L~~L~l~~~--i~~~----~~~~l~~~l~ 296 (336)
T 2ast_B 230 SDSVMLKND----CFQEFFQLNYLQHLSLSRCYDIIPETL---LELGEIPTLKTLQVFGI--VPDG----TLQLLKEALP 296 (336)
T ss_dssp TTCTTCCGG----GGGGGGGCTTCCEEECTTCTTCCGGGG---GGGGGCTTCCEEECTTS--SCTT----CHHHHHHHST
T ss_pred CCCCcCCHH----HHHHHhCCCCCCEeeCCCCCCCCHHHH---HHHhcCCCCCEEeccCc--cCHH----HHHHHHhhCc
Confidence 888743211 111234578999999998864433222 12245899999999998 3322 22223 3466
Q ss_pred EEEEeccccccc
Q 038494 876 KVKVASCNKLEM 887 (1209)
Q Consensus 876 ~L~l~~c~~l~~ 887 (1209)
.|+++ |+.++.
T Consensus 297 ~L~l~-~n~l~~ 307 (336)
T 2ast_B 297 HLQIN-CSHFTT 307 (336)
T ss_dssp TSEES-CCCSCC
T ss_pred ceEEe-cccCcc
Confidence 66665 444443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.32 E-value=8.4e-12 Score=128.93 Aligned_cols=144 Identities=19% Similarity=0.257 Sum_probs=79.6
Q ss_pred CCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccc-ccccccCCCCCcEEec
Q 038494 519 KGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSS-LSSSLGHLINLQTLCL 597 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L~~L~l 597 (1209)
.+++++.+.++.+..++....+++|++|++.+|. +..++ .+..+++|++|++++|.++. .|..++.+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~--~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIH--ATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC--CSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCC--CCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3556666666666655544455666666665552 22222 24556666666666666553 4555566666666666
Q ss_pred cCcccCC--cccccCCCCCCEEEccCCC-CCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 598 DWCQLED--VAAIGQLKKLEILSFRYSD-IKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 598 ~~~~l~~--l~~i~~L~~L~~L~l~~~~-~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
++|.+.. +..++++++|++|++++|. +..+| .+.++++|++|++++ +.++.++ .+..+++|++|+++++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCT--TGGGCSSCCEEEECBC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChH--HhccCCCCCEEEeeCc
Confidence 6666554 2455566666666666664 55554 455566666666655 3344443 2555555555555543
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=9.1e-12 Score=148.01 Aligned_cols=168 Identities=18% Similarity=0.186 Sum_probs=134.5
Q ss_pred cCCeEEEEccCCCCccCCC--cCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEE
Q 038494 518 QKGAIAISIPYGDIQELPE--RLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTL 595 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L 595 (1209)
.++++++.++++.+..++. ...+++|++|++++|. +..+++ |..+++|++|+|++|.++.+|.. ++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEE
Confidence 3479999999999988764 3479999999999984 444444 78999999999999999987743 899999
Q ss_pred eccCcccCCcccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhc-CCCCCcEEECCCCCCc
Q 038494 596 CLDWCQLEDVAAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVIS-KFSRLEELYMGDSFPQ 673 (1209)
Q Consensus 596 ~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~-~L~~L~~L~l~~~~~~ 673 (1209)
++++|.+..+.. ..+++|++|++++|.++.+ |..++++++|++|++++ +.++..++..+. .+++|++|++++|.+.
T Consensus 105 ~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 105 HAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred ECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 999999988722 2468999999999999977 55789999999999999 567766555565 7999999999987532
Q ss_pred cccccCCCccchhhhCCCCCCCEEEeeccCCC
Q 038494 674 WDKVEGGSNASLAELKGLSKLTTLEIQVQDAQ 705 (1209)
Q Consensus 674 ~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~ 705 (1209)
. +.....+++|+.|+++.+.+.
T Consensus 183 ~----------~~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 183 D----------VKGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp E----------EECCCCCTTCCEEECCSSCCC
T ss_pred c----------ccccccCCCCCEEECCCCCCC
Confidence 1 123345788999998877654
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.31 E-value=9.8e-12 Score=134.73 Aligned_cols=164 Identities=20% Similarity=0.210 Sum_probs=124.8
Q ss_pred EEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccC
Q 038494 524 ISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLE 603 (1209)
Q Consensus 524 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~ 603 (1209)
+.+..+.+..++....+++|++|++.++. +..++ .+..+++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus 24 l~l~~~~i~~~~~~~~l~~L~~L~l~~n~--i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 24 QNLGKQSVTDLVSQKELSGVQNFNGDNSN--IQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHHTCSCTTSEECHHHHTTCSEEECTTSC--CCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred HHhcCCCcccccchhhcCcCcEEECcCCC--cccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence 33455555556544567888888888873 45555 36788899999999999888887 888999999999999888
Q ss_pred CcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCcc
Q 038494 604 DVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNA 683 (1209)
Q Consensus 604 ~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 683 (1209)
.++.+.. .+|++|++++|.++.+| .+.++++|++|++++ +.++.++ .++.+++|++|++++|.+..
T Consensus 99 ~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~--~l~~l~~L~~L~L~~N~i~~--------- 164 (263)
T 1xeu_A 99 NLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIV--MLGFLSKLEVLDLHGNEITN--------- 164 (263)
T ss_dssp CCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCG--GGGGCTTCCEEECTTSCCCB---------
T ss_pred CcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCCh--HHccCCCCCEEECCCCcCcc---------
Confidence 8755555 88999999999888875 588899999999988 5677764 37888999999988764311
Q ss_pred chhhhCCCCCCCEEEeeccCCCCC
Q 038494 684 SLAELKGLSKLTTLEIQVQDAQML 707 (1209)
Q Consensus 684 ~l~~L~~l~~L~~L~l~~~~~~~~ 707 (1209)
+..+..+++|+.|+++.+.....
T Consensus 165 -~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 -TGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -CTTSTTCCCCCEEEEEEEEEECC
T ss_pred -hHHhccCCCCCEEeCCCCcccCC
Confidence 14577788889999888765433
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=2.3e-11 Score=126.96 Aligned_cols=144 Identities=23% Similarity=0.333 Sum_probs=114.8
Q ss_pred EEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcc
Q 038494 523 AISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQ 601 (1209)
Q Consensus 523 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~ 601 (1209)
.+...++.+..+|... .+++++|++.++ .+..++...|.++++|++|++++|.++.+|. .+..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETN--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSS--CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCC--ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4556666677776544 468899999888 4556777778889999999999998888776 46788999999999998
Q ss_pred cCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 602 LEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 602 l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +.++.+++..+.++++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCC
Confidence 8877 3478889999999999888887765 68888999999988 5677777766788888888888775
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.30 E-value=2.4e-11 Score=138.11 Aligned_cols=123 Identities=21% Similarity=0.203 Sum_probs=52.7
Q ss_pred cCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccc-cccc-cccCCCCCcE-EeccCcccC
Q 038494 527 PYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFS-SLSS-SLGHLINLQT-LCLDWCQLE 603 (1209)
Q Consensus 527 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~-~i~~l~~L~~-L~l~~~~l~ 603 (1209)
+++.+..+|... .+++++|++++| .+..++...|.++++|++|+|++|.+. .+|. .|.++.+|+. +.+.+|.++
T Consensus 17 ~~~~Lt~iP~~l-~~~l~~L~Ls~N--~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 17 QESKVTEIPSDL-PRNAIELRFVLT--KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp ESTTCCSCCTTC-CTTCSEEEEESC--CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred cCCCCCccCcCc-CCCCCEEEccCC--cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 344444454432 234555555544 344444444455555555555555442 2332 3444444433 233334444
Q ss_pred Cc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccC
Q 038494 604 DV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIA 652 (1209)
Q Consensus 604 ~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~ 652 (1209)
.+ ..+..+++|++|++++|.++.+|.. +....++.+|++.+++.+..++
T Consensus 94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 44 3344444555555544444444321 2223334444444433343333
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.29 E-value=1.7e-11 Score=148.53 Aligned_cols=179 Identities=22% Similarity=0.291 Sum_probs=146.3
Q ss_pred cCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcc
Q 038494 527 PYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVA 606 (1209)
Q Consensus 527 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~ 606 (1209)
..+.+..+.....+++|+.|++.++. +..++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++|.+..++
T Consensus 29 ~~~~i~~~~~~~~L~~L~~L~l~~n~--i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 29 KKKSVTDAVTQNELNSIDQIIANNSD--IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp TCSCTTSEECHHHHTTCCCCBCTTCC--CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred cCCCcccccchhcCCCCCEEECcCCC--CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence 33444444444568899999998874 555553 6889999999999999999887 999999999999999999998
Q ss_pred cccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchh
Q 038494 607 AIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLA 686 (1209)
Q Consensus 607 ~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~ 686 (1209)
.+..+++|++|++++|.+..+| .+..+++|+.|++++ +.+..+ ..++.+++|+.|++++|.+. . +.
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l--~~l~~l~~L~~L~Ls~N~l~---------~-~~ 169 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDI--TVLSRLTKLDTLSLEDNQIS---------D-IV 169 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCC--GGGGSCTTCSEEECCSSCCC---------C-CG
T ss_pred hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCc--hhhcccCCCCEEECcCCcCC---------C-ch
Confidence 9999999999999999999875 589999999999999 567766 33899999999999887431 1 11
Q ss_pred hhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEEEc
Q 038494 687 ELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRICIG 724 (1209)
Q Consensus 687 ~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 724 (1209)
.+..+++|+.|+++.+.+..++.-..+.+|+.|.+..+
T Consensus 170 ~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 170 PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred hhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 27889999999999999887765456778888877543
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.5e-11 Score=126.98 Aligned_cols=149 Identities=18% Similarity=0.240 Sum_probs=118.2
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCC--cccccCCCCCCE
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLED--VAAIGQLKKLEI 616 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~--l~~i~~L~~L~~ 616 (1209)
.+++|++|++.++. +..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. +..++++++|++
T Consensus 42 ~l~~L~~L~l~~n~--i~~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANIN--VTDLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSC--CSCCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCC--ccChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 57889999998874 44555 3678899999999999887765 68889999999999999886 378889999999
Q ss_pred EEccCCCCCc-cchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCC
Q 038494 617 LSFRYSDIKQ-LPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLT 695 (1209)
Q Consensus 617 L~l~~~~~~~-lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~ 695 (1209)
|++++|.++. .|..++++++|++|++++|..+..++ .+..+++|++|++++|... .+..+..+++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~----------~~~~l~~l~~L~ 184 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVH----------DYRGIEDFPKLN 184 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCC----------CCTTGGGCSSCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCc----------ChHHhccCCCCC
Confidence 9999998884 67778999999999999965577775 3888999999999876421 122567788899
Q ss_pred EEEeeccCC
Q 038494 696 TLEIQVQDA 704 (1209)
Q Consensus 696 ~L~l~~~~~ 704 (1209)
.|+++++.+
T Consensus 185 ~L~l~~N~i 193 (197)
T 4ezg_A 185 QLYAFSQTI 193 (197)
T ss_dssp EEEECBC--
T ss_pred EEEeeCccc
Confidence 999887764
No 108
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.27 E-value=3.4e-11 Score=136.87 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=70.0
Q ss_pred cEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCC-c--ccccCCCCCCE-EE
Q 038494 544 KLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLED-V--AAIGQLKKLEI-LS 618 (1209)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~-l--~~i~~L~~L~~-L~ 618 (1209)
++++.+++ ....+|..+ .++++.|+|++|.|+.+|. +|.++++|++|+|++|.+.+ + ..|.++.+|+. +.
T Consensus 12 ~~v~C~~~--~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQES--KVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEEST--TCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCC--CCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 44455444 345555543 2466777777777777765 46777777777777777533 3 34666666654 44
Q ss_pred ccCCCCCccc-hhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECC
Q 038494 619 FRYSDIKQLP-LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 619 l~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 668 (1209)
+.+|+++.+| ..+..+++|++|++++ +.+..+++..+....++..|++.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEE
T ss_pred ccCCcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhc
Confidence 4456666664 3456677777777776 45555554434444455555543
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.26 E-value=3e-11 Score=130.89 Aligned_cols=145 Identities=24% Similarity=0.299 Sum_probs=127.6
Q ss_pred hcCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEe
Q 038494 517 IQKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLC 596 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~ 596 (1209)
....++++.+.++.+..++....+++|++|++++| .+..++. +.++++|++|++++|.++.+|.... .+|++|+
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N--~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN--QISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS--CCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC--ccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 35678999999999999986668999999999998 4666665 7899999999999999999887444 9999999
Q ss_pred ccCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCC
Q 038494 597 LDWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSF 671 (1209)
Q Consensus 597 l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~ 671 (1209)
+++|.++.+..+.++++|++|++++|.++.+| .+..+++|++|++++ +.++.. ..+..+++|+.|+++++.
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcch--HHhccCCCCCEEeCCCCc
Confidence 99999999988999999999999999999986 689999999999999 567766 348899999999998764
No 110
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=6.7e-11 Score=136.79 Aligned_cols=287 Identities=14% Similarity=0.067 Sum_probs=172.4
Q ss_pred cchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcc----c--CCEEEEEEcCCCc-CHHHH
Q 038494 159 EAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK----V--FDKVVMAEVTENP-DVQKI 227 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~--f~~~~wv~~s~~~-~~~~l 227 (1209)
..|+||+++++.+.+++. ....+.+.|+|++|+|||++|+.+++...... . ...++|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999998775 33456899999999999999999998874321 1 3467888887766 78888
Q ss_pred HHHHHHHh-CCCCCCC-CChHHHHHHHHHHHhcCCeEEEEEeCCCcccC--cccc-CCCCCCCCccccccccCCcEEEEe
Q 038494 228 QDKLASDL-DLNFDLN-DSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG--LEEI-GIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 228 ~~~i~~~l-~~~~~~~-~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--~~~l-~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
+..+++.+ +...... .........+...+.. ++.+||+||++.... +... ...+.... .+..+|+|
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~--------~~~~iI~~ 170 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSD--------ANISVIMI 170 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSS--------SCEEEEEE
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCC--------cceEEEEE
Confidence 88888887 3222111 1124556667777764 444999999987632 1111 11111111 46778888
Q ss_pred ccchhhhc----cc-CCcceEEEcCCCCHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHhC---CChh-HHHHHHHHH-
Q 038494 303 SRSKHLLT----ND-MNSQKIFLIEVLSKEEALQFFEKIVGN-SAKASAFQPLADEIVGKCG---GLPV-ALSTVANAL- 371 (1209)
Q Consensus 303 tR~~~v~~----~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPL-ai~~~~~~l- 371 (1209)
|+...... .. ......+.+++++.++..++|...+.. .....-..+..+.|++.++ |.|. |+.++-...
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 88753211 00 011238999999999999999987631 1111222456778888888 8877 444433322
Q ss_pred -h-c--C-ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhcccCcCccccHHHHHHhhhhhc
Q 038494 372 -K-N--K-KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTLFGEGTPIQVASLLRYGKGLF 446 (1209)
Q Consensus 372 -~-~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp~~~~i~~~~li~~~~g~i 446 (1209)
. + . +.+.+..++++... ..+..+++.|+++ .+..+..++....+-++. +.....+..+-
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~~--------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g 314 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYEQ--------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK 314 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHHH--------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT
T ss_pred HhcCCCccCHHHHHHHHHHHhc--------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC
Confidence 2 1 2 56677777665431 1233456778876 566555555511100111 11112222110
Q ss_pred cccccHHHHHHHHHHHHHHHHhcccccC
Q 038494 447 KNVRTLENARNRVDALIDNLKASCLLLD 474 (1209)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 474 (1209)
... .....+.++++.|+..+++..
T Consensus 315 ~~~----~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 315 QKP----LSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp CCC----CCHHHHHHHHHHHHHTTSEEE
T ss_pred CCC----CCHHHHHHHHHHHHhCCCEEE
Confidence 000 123456678889999999964
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.24 E-value=2.6e-12 Score=148.67 Aligned_cols=83 Identities=19% Similarity=0.156 Sum_probs=50.9
Q ss_pred hcCCCCCcEEEecCccccc-----ccccccCCCCCcEEeccCcccCCc------------ccccCCCCCCEEEccCCCCC
Q 038494 563 FEGTEDLKVLSLSGIHFSS-----LSSSLGHLINLQTLCLDWCQLEDV------------AAIGQLKKLEILSFRYSDIK 625 (1209)
Q Consensus 563 ~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~l~~l------------~~i~~L~~L~~L~l~~~~~~ 625 (1209)
+..+++|++|+|++|.+.. ++..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3556667777777766653 334455667777777776643322 12356677777777776665
Q ss_pred c-----cchhccCCCCCCEEeccCC
Q 038494 626 Q-----LPLEIGQLAQLQLLDLSNC 645 (1209)
Q Consensus 626 ~-----lp~~i~~L~~L~~L~l~~~ 645 (1209)
. +|..+.++++|++|++++|
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC
Confidence 4 5556666777777777763
No 112
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=2.6e-10 Score=132.13 Aligned_cols=319 Identities=12% Similarity=0.095 Sum_probs=187.0
Q ss_pred cchhhHHHHHHHHHHHHhC----CCce--EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALRN----DKLN--IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
..++||+.+++.+.+++.. .... .+.|+|++|+||||+|+.+++...... -..++|++++...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5799999999999998874 3334 899999999999999999998876431 12568888888888889999999
Q ss_pred HHhCCCCCCCC-ChHHHHHHHHHHHh-cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchhh
Q 038494 233 SDLDLNFDLND-SKPHRAKQLCQRLT-KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHL 308 (1209)
Q Consensus 233 ~~l~~~~~~~~-~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 308 (1209)
..++....... ........+...+. .+++.+||+|+++... ....+...+..... ....+..+|++|+....
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~----~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK----LGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH----HSSCCEEEEEEESSTHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC----CCcCCEEEEEEECCchH
Confidence 98876533222 22444455555554 2568999999998752 22222211111000 00025678888776533
Q ss_pred hcccC----C--cceEEEcCCCCHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHh---------CCChhHHHHHHHHHh
Q 038494 309 LTNDM----N--SQKIFLIEVLSKEEALQFFEKIVGN-SAKASAFQPLADEIVGKC---------GGLPVALSTVANALK 372 (1209)
Q Consensus 309 ~~~~~----~--~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~glPLai~~~~~~l~ 372 (1209)
..... . ....+.+++++.++..+++...+.. .....-..+..+.|++.+ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21111 0 1237999999999999999887642 011123356788999999 788755444433211
Q ss_pred ------cC---ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhcccC---cCccccHHHHHH
Q 038494 373 ------NK---KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTLFG---EGTPIQVASLLR 440 (1209)
Q Consensus 373 ------~~---~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~fp---~~~~i~~~~li~ 440 (1209)
+. +.+....+..... ...+.-.+..|+++ .+.++..++.+. .+..+....+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 21 2233333333221 11223346778877 677777666543 221455555544
Q ss_pred hhhhhccccccHHHHHHHHHHHHHHHHhcccccCC------CCCCceE-------ehhHHHHHHHHHhhc
Q 038494 441 YGKGLFKNVRTLENARNRVDALIDNLKASCLLLDG------DAEDEVK-------MHDVIHVVAVSIASE 497 (1209)
Q Consensus 441 ~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~------~~~~~~~-------mHdlv~~~~~~~~~~ 497 (1209)
.+..+........-....+..++++|...+++... +..+++. .|++++.+...+..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 317 SYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 32221100000000134566789999999999652 1112222 367777666655544
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.24 E-value=2.3e-11 Score=138.96 Aligned_cols=171 Identities=23% Similarity=0.230 Sum_probs=131.7
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhc-CCCCCcEEEecCcccccccc-cccCCCCCcEEeccC
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFE-GTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDW 599 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~ 599 (1209)
+.+...++.+..+|... .+.++.|++++| .+..++...|. ++++|++|+|++|.++.++. .+..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N--~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHN--NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSS--CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCC--CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777788888887654 356889999888 56777777777 89999999999999988764 688999999999999
Q ss_pred cccCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhh---cCCCCCcEEECCCCCCc
Q 038494 600 CQLEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVI---SKFSRLEELYMGDSFPQ 673 (1209)
Q Consensus 600 ~~l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l---~~L~~L~~L~l~~~~~~ 673 (1209)
|.++.+ ..+.++.+|++|++++|.+..+ |..+.++++|++|++++ +.++.++...+ ..+++|+.|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 998887 4588999999999999998877 56788999999999998 67888887655 56899999999887532
Q ss_pred cccccCCCccchhhhCCCCC--CCEEEeeccCC
Q 038494 674 WDKVEGGSNASLAELKGLSK--LTTLEIQVQDA 704 (1209)
Q Consensus 674 ~~~~~~~~~~~l~~L~~l~~--L~~L~l~~~~~ 704 (1209)
. -....+..++. ++.|+++.+..
T Consensus 177 ~--------l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 K--------LPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp C--------CCHHHHHHSCHHHHTTEECCSSCE
T ss_pred c--------cCHHHhhhccHhhcceEEecCCCc
Confidence 1 01223444444 36788887764
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.23 E-value=7e-11 Score=136.93 Aligned_cols=299 Identities=14% Similarity=0.105 Sum_probs=177.6
Q ss_pred ccchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhcc---c-CCEEEEEEcCCCcCHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK---V-FDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~---~-f~~~~wv~~s~~~~~~~l~~ 229 (1209)
+..|+||+++++.+.+++. ....+.+.|+|++|+||||+|+.+++...... . -..++|+++....+...++.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3579999999999999885 24457899999999999999999998774321 1 13568889888888999999
Q ss_pred HHHHHhCCCCCCCCC-hHHHHHHHHHHHh-cCCeEEEEEeCCCcccCc----cccCCCCCCCCccccccccCCcEEEEec
Q 038494 230 KLASDLDLNFDLNDS-KPHRAKQLCQRLT-KEKRVLIILDNIWKKLGL----EEIGIPFGDVDEKDRKQDLRRRTIILTS 303 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~-~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~~~----~~l~~~~~~~~~~~~~~~~~~s~ilvTt 303 (1209)
.++..++........ .......+...+. .+++.+||+||++..... +.+...+..... .....+..+|+||
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~---~~~~~~~~~I~~t 174 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE---LGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC---C-----CEEEEEC
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh---cCCCceEEEEEEE
Confidence 999999765433222 2444566666664 356899999999876321 111110000000 0001456788888
Q ss_pred cchhhhcc----cCC--cceEEEcCCCCHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHhC---CChh-HHHHHHHHHh
Q 038494 304 RSKHLLTN----DMN--SQKIFLIEVLSKEEALQFFEKIVGN-SAKASAFQPLADEIVGKCG---GLPV-ALSTVANALK 372 (1209)
Q Consensus 304 R~~~v~~~----~~~--~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPL-ai~~~~~~l~ 372 (1209)
+....... ... ....+.+++++.++..+++...+.. .....-..+..+.|++.++ |.|- ++.++.....
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 76532110 011 1257899999999999999987531 0111222356778888888 9994 3333322221
Q ss_pred -----c--C-ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhc-ccCcCccccHHHHHHhhh
Q 038494 373 -----N--K-KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCT-LFGEGTPIQVASLLRYGK 443 (1209)
Q Consensus 373 -----~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s-~fp~~~~i~~~~li~~~~ 443 (1209)
+ . +.+.+..++...... .+.-++..++++ .+..+..++ ++..+..+....+.+...
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~~~--------------~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIERD--------------RVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHHHH--------------HHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHhhc--------------hHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 556666666653211 123356778877 555555444 443323555554444311
Q ss_pred hhccccccHHHHHHHHHHHHHHHHhcccccC
Q 038494 444 GLFKNVRTLENARNRVDALIDNLKASCLLLD 474 (1209)
Q Consensus 444 g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 474 (1209)
.+.........+...+.++++.|...+++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 320 ELTSTLGLEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 1100000000123456678888999999875
No 115
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=3.9e-11 Score=139.07 Aligned_cols=295 Identities=15% Similarity=0.121 Sum_probs=170.9
Q ss_pred ccchhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhccc-CCEEEEEEcCCCcCHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV-FDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
+..|+||+++++.+.+++. ......+.|+|++|+||||||+.+++....... -..++|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999887 344578999999999999999999988754311 23567888877667788888888
Q ss_pred HHhCCCCCCCC-ChHHHHHHHHHHHhc-CCeEEEEEeCCCcccC------ccccCCCCCCCCccccccccCCcEEEEecc
Q 038494 233 SDLDLNFDLND-SKPHRAKQLCQRLTK-EKRVLIILDNIWKKLG------LEEIGIPFGDVDEKDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 233 ~~l~~~~~~~~-~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 304 (1209)
..++....... ........+.+.+.. +++.+||+|+++.... +..+....... ...+..+|+||+
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~-------~~~~~~~I~~~~ 171 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV-------NKSKISFIGITN 171 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-------CC--EEEEEEES
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-------CCCeEEEEEEEC
Confidence 87765433222 224445566666653 3589999999987531 11111111000 013556788887
Q ss_pred chhhhcccC------CcceEEEcCCCCHHHHHHHHHHHhCC-CCCCCcchHHHHHHHHHhC---CChhHHHHHHH-HHh-
Q 038494 305 SKHLLTNDM------NSQKIFLIEVLSKEEALQFFEKIVGN-SAKASAFQPLADEIVGKCG---GLPVALSTVAN-ALK- 372 (1209)
Q Consensus 305 ~~~v~~~~~------~~~~~~~l~~L~~~e~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPLai~~~~~-~l~- 372 (1209)
......... -....+.+++++.++..+++...+.. .....-..+..+.+++.++ |.|..+..+.. ...
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 654321110 11258999999999999999986531 1112223566778888887 99884433322 221
Q ss_pred ----c--C-ChhHHHHHHHHHhcCCCccccCccccceeeeEEecccCCchhHHHHHHHhcc-cC-cCccccHHHHHHhhh
Q 038494 373 ----N--K-KLPVWKDALTQLRNSNPREIHGMDANVCSSIELSYNFLESDEAKSLFLLCTL-FG-EGTPIQVASLLRYGK 443 (1209)
Q Consensus 373 ----~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~c~~~~s~-fp-~~~~i~~~~li~~~~ 443 (1209)
+ . +.+.+..++..... ..+.-.+..+|+. .+..+..++. +. ....+....+.+...
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~~--------------~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~ 316 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIER--------------DRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYL 316 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHHH--------------HHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHHhh--------------chHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHH
Confidence 1 1 45556655554321 1223345677776 5555555553 21 112344443322211
Q ss_pred hhccccccHHHHHHHHHHHHHHHHhcccccC
Q 038494 444 GLFKNVRTLENARNRVDALIDNLKASCLLLD 474 (1209)
Q Consensus 444 g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 474 (1209)
.+.............+..+++.|...+++..
T Consensus 317 ~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 317 NICKKLGVEAVTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHTCCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 1000000000012345567888999999864
No 116
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.22 E-value=2.7e-11 Score=135.30 Aligned_cols=193 Identities=18% Similarity=0.082 Sum_probs=140.4
Q ss_pred cCCeEEEEccCCCCccC-CCc---CCCCCccEEEeccCCCccc--ccChhhhcCCCCCcEEEecCccccccc-ccccCCC
Q 038494 518 QKGAIAISIPYGDIQEL-PER---LECPQLKLLLLLANGDSYL--EISHLFFEGTEDLKVLSLSGIHFSSLS-SSLGHLI 590 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~-~~~---~~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~ 590 (1209)
...++++.+.++.+... |.. ..+++|++|++++|..... .++...+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 35689999999887643 333 4689999999998852211 122233457899999999999998765 5788999
Q ss_pred CCcEEeccCcccCC---c---ccccCCCCCCEEEccCCCCCccchh----ccCCCCCCEEeccCCCCCcccCchhhcCC-
Q 038494 591 NLQTLCLDWCQLED---V---AAIGQLKKLEILSFRYSDIKQLPLE----IGQLAQLQLLDLSNCSSLVVIAPNVISKF- 659 (1209)
Q Consensus 591 ~L~~L~l~~~~l~~---l---~~i~~L~~L~~L~l~~~~~~~lp~~----i~~L~~L~~L~l~~~~~l~~~~~~~l~~L- 659 (1209)
+|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.+....+..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhcc
Confidence 99999999998654 2 2246889999999999999877653 57889999999999 56666633336665
Q ss_pred --CCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCCcccccCCCCeEEEE
Q 038494 660 --SRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLPQDLVFVELPRYRIC 722 (1209)
Q Consensus 660 --~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 722 (1209)
++|++|++++|... . ....+ .++|+.|+++.+.+..++....+++|+.|.+.
T Consensus 249 ~~~~L~~L~Ls~N~l~------~---lp~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE------Q---VPKGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp CCTTCCCEECCSSCCC------S---CCSCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred CcCcCCEEECCCCCCC------c---hhhhh--cCCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 69999999887542 1 11122 26899999999988877654456677777653
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.22 E-value=9e-11 Score=123.34 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=117.7
Q ss_pred cEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEcc
Q 038494 544 KLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFR 620 (1209)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~ 620 (1209)
+.+++.++ ....+|..+ .+.|+.|++++|.++.+|. .+..+++|++|++++|.++.+ ..+.++++|++|+++
T Consensus 14 ~~v~c~~~--~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGK--GLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTS--CCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCC--CcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45666665 355666544 2689999999999998876 789999999999999999887 679999999999999
Q ss_pred CCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEe
Q 038494 621 YSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEI 699 (1209)
Q Consensus 621 ~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l 699 (1209)
+|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+... ....+..+++|+.|++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTI--------AKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCC--------CTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEE--------CHHHHhCCCCCCEEEe
Confidence 9999999876 58899999999999 678888777789999999999988753211 1124667888899988
Q ss_pred eccCC
Q 038494 700 QVQDA 704 (1209)
Q Consensus 700 ~~~~~ 704 (1209)
+.+..
T Consensus 160 ~~N~~ 164 (220)
T 2v9t_B 160 AQNPF 164 (220)
T ss_dssp CSSCE
T ss_pred CCCCc
Confidence 77653
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=4.9e-11 Score=136.20 Aligned_cols=156 Identities=21% Similarity=0.282 Sum_probs=110.3
Q ss_pred cEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccccc-cc-CCCCCcEEeccCcccCCc--ccccCCCCCCEEEc
Q 038494 544 KLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSS-LG-HLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 619 (1209)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~-~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l 619 (1209)
+++++.++ ....+|..+ ...+++|+|++|.++.++.. +. .+.+|++|++++|.++.+ ..+.++++|++|++
T Consensus 21 ~~l~c~~~--~l~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQ--QLPNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSS--CCSSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCC--CcCccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 56666665 355566543 34578888888888877653 54 788888888888888877 45888888888888
Q ss_pred cCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEE
Q 038494 620 RYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLE 698 (1209)
Q Consensus 620 ~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~ 698 (1209)
++|.++.+|. .+.++++|++|++++ +.+..+++..+..+++|++|++++|.+.. -....+..+..+++|+.|+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISR-----FPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCS-----CCGGGTC----CTTCCEEE
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCe-----eCHHHhcCcccCCcCCEEE
Confidence 8888887765 477888888888888 66777766668888888888888764321 1111122235678888888
Q ss_pred eeccCCCCCCcc
Q 038494 699 IQVQDAQMLPQD 710 (1209)
Q Consensus 699 l~~~~~~~~~~~ 710 (1209)
++.+.+..++..
T Consensus 170 L~~N~l~~l~~~ 181 (361)
T 2xot_A 170 LSSNKLKKLPLT 181 (361)
T ss_dssp CCSSCCCCCCHH
T ss_pred CCCCCCCccCHH
Confidence 888888777643
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=4.4e-11 Score=120.06 Aligned_cols=137 Identities=23% Similarity=0.222 Sum_probs=75.6
Q ss_pred CCCCcEEEecCcccc--cccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEccCCCCCc-cchhccCCCCCCEEec
Q 038494 566 TEDLKVLSLSGIHFS--SLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYSDIKQ-LPLEIGQLAQLQLLDL 642 (1209)
Q Consensus 566 l~~Lr~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~~~~~-lp~~i~~L~~L~~L~l 642 (1209)
.++|++|++++|.++ .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 355666666666665 5665556666666666666665555555666666666666666654 4555555666666666
Q ss_pred cCCCCCcccCc-hhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEEeeccCCCCCC
Q 038494 643 SNCSSLVVIAP-NVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQMLP 708 (1209)
Q Consensus 643 ~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~~~~ 708 (1209)
++ +.++.++. ..+..+++|++|++++|... .........+..+++|+.|+++.+....++
T Consensus 103 s~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SG-NKLKDISTLEPLKKLECLKSLDLFNCEVT-----NLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BS-SSCCSSGGGGGGSSCSCCCEEECCSSGGG-----TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cC-CccCcchhHHHHhcCCCCCEEEeeCCcCc-----chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 66 34444432 33556666666666554321 000000124555666666666665554443
No 120
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=3e-11 Score=134.93 Aligned_cols=136 Identities=15% Similarity=0.144 Sum_probs=85.6
Q ss_pred CCCCcEEEecCcccc-cccccc--cCCCCCcEEeccCcccCCc------ccccCCCCCCEEEccCCCCCccc-hhccCCC
Q 038494 566 TEDLKVLSLSGIHFS-SLSSSL--GHLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRYSDIKQLP-LEIGQLA 635 (1209)
Q Consensus 566 l~~Lr~L~L~~~~i~-~lp~~i--~~l~~L~~L~l~~~~l~~l------~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~ 635 (1209)
+++|++|++++|.+. ..|..+ ..+.+|++|++++|.+... ..+..+++|++|++++|.+..+| ..+++++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 456888888888776 445555 7778888888888876652 23456778888888888777654 4577778
Q ss_pred CCCEEeccCCCCCcc--cC-chhhcCCCCCcEEECCCCCCccccccCCCccchhh-hCCCCCCCEEEeeccCCCCC
Q 038494 636 QLQLLDLSNCSSLVV--IA-PNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAE-LKGLSKLTTLEIQVQDAQML 707 (1209)
Q Consensus 636 ~L~~L~l~~~~~l~~--~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~-L~~l~~L~~L~l~~~~~~~~ 707 (1209)
+|++|++++|..... ++ ...++++++|++|++++|... ........ +..+++|+.|+++.+.+...
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~------~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME------TPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC------CHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC------chHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 888888877432221 21 111356777888887776421 00111111 35667788888877776655
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.19 E-value=1.6e-10 Score=121.36 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=118.4
Q ss_pred cEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc--cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEc
Q 038494 544 KLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS--SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 619 (1209)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~--~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l 619 (1209)
++++++++ ....+|..+ ...+++|++++|.++.++. .+..+++|++|++++|.++.+ ..+.++++|++|++
T Consensus 14 ~~l~~s~n--~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQ--KLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCC--CcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 57788776 355676644 3467899999999998743 489999999999999999888 47999999999999
Q ss_pred cCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEE
Q 038494 620 RYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLE 698 (1209)
Q Consensus 620 ~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~ 698 (1209)
++|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|.+.. .....+..+++|+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITT--------VAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCC--------BCTTTTTTCTTCCEEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCE--------ECHHHhcCCCCCCEEE
Confidence 99999988765 88999999999999 67888877778999999999998874311 1124567788999999
Q ss_pred eeccCC
Q 038494 699 IQVQDA 704 (1209)
Q Consensus 699 l~~~~~ 704 (1209)
++.+..
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 887653
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.17 E-value=2.3e-10 Score=121.15 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=119.4
Q ss_pred CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEE
Q 038494 542 QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILS 618 (1209)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~ 618 (1209)
....+++.++ ....+|..+ .++|++|+|++|.++.+ |..+..+++|++|++++|.+..+ ..+..+++|++|+
T Consensus 20 s~~~v~c~~~--~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSK--RHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTS--CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCC--CcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence 4566777665 466677644 38899999999999977 66789999999999999999888 4578999999999
Q ss_pred ccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEE
Q 038494 619 FRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTL 697 (1209)
Q Consensus 619 l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L 697 (1209)
+++|.++.+|.. +..+++|++|++++ +.++.+|.. +..+++|++|++++|.+.. - ....+..+++|+.|
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~-----~---~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKS-----I---PHGAFDRLSSLTHA 164 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCC-----C---CTTTTTTCTTCCEE
T ss_pred CCCCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCc-----c---CHHHHhCCCCCCEE
Confidence 999999988765 68899999999999 678888765 7899999999998874321 0 11346778899999
Q ss_pred EeeccCC
Q 038494 698 EIQVQDA 704 (1209)
Q Consensus 698 ~l~~~~~ 704 (1209)
+++.+..
T Consensus 165 ~l~~N~~ 171 (229)
T 3e6j_A 165 YLFGNPW 171 (229)
T ss_dssp ECTTSCB
T ss_pred EeeCCCc
Confidence 9987754
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.16 E-value=5.9e-11 Score=116.39 Aligned_cols=103 Identities=24% Similarity=0.285 Sum_probs=56.3
Q ss_pred hcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCC-c-ccccCCCCCCEEEccCCCCCccc--hhccCCCCCC
Q 038494 563 FEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLED-V-AAIGQLKKLEILSFRYSDIKQLP--LEIGQLAQLQ 638 (1209)
Q Consensus 563 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~-l-~~i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~ 638 (1209)
+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+| ..++.+++|+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 34555566666666555555 445555666666666665555 3 33444556666666665555543 4555566666
Q ss_pred EEeccCCCCCcccCc---hhhcCCCCCcEEEC
Q 038494 639 LLDLSNCSSLVVIAP---NVISKFSRLEELYM 667 (1209)
Q Consensus 639 ~L~l~~~~~l~~~~~---~~l~~L~~L~~L~l 667 (1209)
+|++++ +.++..++ ..++.+++|+.|++
T Consensus 117 ~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 117 SLDLFN-CEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTT-CGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEeCcC-CcccchHHHHHHHHHHCCCcccccC
Confidence 666655 34444443 33555555555554
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.16 E-value=3.2e-10 Score=135.51 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=136.0
Q ss_pred CCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEecc
Q 038494 519 KGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLD 598 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~ 598 (1209)
.+++.+.+.++.+..+|... +++|++|++++|. +..+| ..+++|++|++++|.++.+|. ++. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~--l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNA--LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC--CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCC--Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 47889999999998888755 4899999999984 55676 357899999999999999998 766 99999999
Q ss_pred CcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCCcccccc
Q 038494 599 WCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVE 678 (1209)
Q Consensus 599 ~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 678 (1209)
+|.++.++. .+++|++|++++|.++.+|. .+++|++|++++ +.++.+|. +. ++|+.|++++|.+..
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~~---- 194 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLES---- 194 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCSS----
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCCc----
Confidence 999988855 78999999999999999887 678999999999 56777765 55 899999999875421
Q ss_pred CCCccchhhh-CCCCCCCEEEeeccCCCCCCccc-ccCCCCeEEE
Q 038494 679 GGSNASLAEL-KGLSKLTTLEIQVQDAQMLPQDL-VFVELPRYRI 721 (1209)
Q Consensus 679 ~~~~~~l~~L-~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 721 (1209)
.+.....| .....|+.|+++.|.+..+|..+ .+.+|+.|.+
T Consensus 195 --lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 195 --LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237 (571)
T ss_dssp --CCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEEC
T ss_pred --hhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEe
Confidence 11111111 11233499999999998888753 4566666554
No 125
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.14 E-value=3.7e-11 Score=138.95 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=22.4
Q ss_pred CccCCcEEEEecccCce----eeeccCCccccccCCcccEEecccc
Q 038494 787 GFPRLKHLWVERCSEIL----HIVGSVGRVHRKVFPLLESLSLYKL 828 (1209)
Q Consensus 787 ~l~~L~~L~l~~~~~l~----~~~~~~~~~~~~~~~~L~~L~l~~~ 828 (1209)
.+++|++|++++|.-.. .++.. ....+++|+.|+++++
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~----l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTV----IDEKMPDLLFLELNGN 313 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHH----HHHHCTTCCEEECTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHH----HHhcCCCceEEEccCC
Confidence 46778888888775221 01100 0133688888888874
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.13 E-value=1.1e-10 Score=117.03 Aligned_cols=127 Identities=23% Similarity=0.218 Sum_probs=71.2
Q ss_pred CCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCC-c-ccccCCCCCCEEE
Q 038494 541 PQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLED-V-AAIGQLKKLEILS 618 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~-l-~~i~~L~~L~~L~ 618 (1209)
++|++|++.+|......++.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..+.++++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 445555555542111133332 35556666666666666655 456666666666666666655 3 3344466666666
Q ss_pred ccCCCCCccc--hhccCCCCCCEEeccCCCCCcccCc---hhhcCCCCCcEEECCCC
Q 038494 619 FRYSDIKQLP--LEIGQLAQLQLLDLSNCSSLVVIAP---NVISKFSRLEELYMGDS 670 (1209)
Q Consensus 619 l~~~~~~~lp--~~i~~L~~L~~L~l~~~~~l~~~~~---~~l~~L~~L~~L~l~~~ 670 (1209)
+++|.++.+| ..+.++++|++|++++ +.+...++ ..+..+++|++|++.++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666666554 4566666666666666 34555544 34566666666666554
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.13 E-value=2.8e-10 Score=116.62 Aligned_cols=120 Identities=18% Similarity=0.332 Sum_probs=86.8
Q ss_pred EEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCC
Q 038494 545 LLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYS 622 (1209)
Q Consensus 545 ~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~ 622 (1209)
++++.++ .+..+|..+ .+.|++|++++|.++.+|..+..+.+|++|++++|.++.+ ..|.++++|++|++++|
T Consensus 14 ~l~~~~~--~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNK--GLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTS--CCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCC--CCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4444444 234444433 2467888888888888887788888888888888887777 45778888888888888
Q ss_pred CCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 623 DIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 623 ~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
.++.+|+ .+.++++|++|++++ +.++.+++..+..+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCC
Confidence 8877754 477788888888887 6677777666777788888877765
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.12 E-value=1e-10 Score=145.50 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=98.0
Q ss_pred cCCeEEEEccCCCCccCCCcC-CCCCccEEEeccCC--CcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcE
Q 038494 518 QKGAIAISIPYGDIQELPERL-ECPQLKLLLLLANG--DSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQT 594 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~ 594 (1209)
...++++.+..+.+...+... ...+|+.+.+.... .....++...|..++.|++|+|++|.+..+|..+..+.+|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 356888888877776655432 34444444443311 011225566778999999999999999999998999999999
Q ss_pred EeccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCCCC
Q 038494 595 LCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFP 672 (1209)
Q Consensus 595 L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~ 672 (1209)
|+|++|.++.+ ..+++|++|++|+|++|.++.+|..+++|++|++|++++ +.++.+|.. +++|++|++|++++|..
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCcc
Confidence 99999999988 789999999999999999999999999999999999999 577888766 99999999999998754
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.11 E-value=5e-10 Score=116.81 Aligned_cols=143 Identities=22% Similarity=0.264 Sum_probs=121.5
Q ss_pred hcCCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccccc-ccCCCCCc
Q 038494 517 IQKGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSS-LGHLINLQ 593 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~ 593 (1209)
.+.+++++.+.++.+..++.. ..+++|++|++.+| .+..++...|.++++|++|++++|.++.+|.. +..+++|+
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN--KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLK 103 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC--ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCC
Confidence 456899999999999888764 37999999999998 46678888889999999999999999988764 78999999
Q ss_pred EEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 594 TLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 594 ~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
+|++++|.++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|+++++. + .+.+++|+.|.++.
T Consensus 104 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-~-------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 104 ELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-W-------DCTCPGIRYLSEWI 174 (208)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-B-------CCCTTTTHHHHHHH
T ss_pred EEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-e-------ecCCCCHHHHHHHH
Confidence 999999999888 4479999999999999999988775 7889999999999842 2 23456777776544
No 130
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=6.9e-10 Score=117.48 Aligned_cols=191 Identities=10% Similarity=0.104 Sum_probs=121.4
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
.....++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.+..+.......+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 33567899999999999999876665699999999999999999998864332122345555555444433322222211
Q ss_pred CCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchhhh-ccc
Q 038494 236 DLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL-TND 312 (1209)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~~ 312 (1209)
.... ...+++.+||+||++... ..+.+...+.... .+.++|+||+..... ...
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~--------~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYS--------KSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT--------TTEEEEEEESCGGGSCHHH
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcC--------CCCeEEEEeCChhhcCHHH
Confidence 1100 012567999999998762 2222222111111 567888888765322 111
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 038494 313 MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANAL 371 (1209)
Q Consensus 313 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 371 (1209)
......+.+.+++.++..+++.+.+..... .-..+..+.|++.++|.|..+..+...+
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 233458999999999999999987642111 1224677889999999999765554433
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=1.7e-10 Score=112.99 Aligned_cols=124 Identities=22% Similarity=0.216 Sum_probs=108.2
Q ss_pred hcCCeEEEEccCCCCc--cCCCc-CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccc-ccccccCCCCC
Q 038494 517 IQKGAIAISIPYGDIQ--ELPER-LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSS-LSSSLGHLINL 592 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~~L 592 (1209)
.+.+++++.+.++.+. .+|.. ..+++|++|++.+|. +..+ ..+.++++|++|++++|.++. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 3467899999999988 77766 479999999999984 4444 557899999999999999997 88888889999
Q ss_pred cEEeccCcccCCc---ccccCCCCCCEEEccCCCCCccch----hccCCCCCCEEeccC
Q 038494 593 QTLCLDWCQLEDV---AAIGQLKKLEILSFRYSDIKQLPL----EIGQLAQLQLLDLSN 644 (1209)
Q Consensus 593 ~~L~l~~~~l~~l---~~i~~L~~L~~L~l~~~~~~~lp~----~i~~L~~L~~L~l~~ 644 (1209)
++|++++|.++.+ ..++.+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999885 678999999999999999998876 689999999998863
No 132
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.09 E-value=6.4e-10 Score=132.90 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=129.7
Q ss_pred cCCeEEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEec
Q 038494 518 QKGAIAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCL 597 (1209)
Q Consensus 518 ~~~~r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l 597 (1209)
..+++.+.+++|.+..+| ..+++|++|++++|. +..+|. +.+ +|++|++++|.++.+|. .+++|++|++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~--l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNR--LSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINA 147 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSC--CSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCC--CCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeC
Confidence 467999999999999998 458999999999984 555776 444 99999999999999988 7899999999
Q ss_pred cCcccCCcccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCC-------cEEECCCC
Q 038494 598 DWCQLEDVAAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRL-------EELYMGDS 670 (1209)
Q Consensus 598 ~~~~l~~l~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L-------~~L~l~~~ 670 (1209)
++|.++.++. .+++|++|++++|.++.+|. +. ++|++|++++ +.++.+|. +.. +| +.|++++|
T Consensus 148 s~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N 217 (571)
T 3cvr_A 148 DNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEETEIFFRCREN 217 (571)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------CCEEEECCSS
T ss_pred CCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcccccceEEecCCC
Confidence 9999988854 67899999999999999988 66 8999999999 57877776 443 66 99999887
Q ss_pred CCccccccCCCccchhhhCCCCCCCEEEeeccCCC
Q 038494 671 FPQWDKVEGGSNASLAELKGLSKLTTLEIQVQDAQ 705 (1209)
Q Consensus 671 ~~~~~~~~~~~~~~l~~L~~l~~L~~L~l~~~~~~ 705 (1209)
.+. .....+..+++|+.|+++.|.+.
T Consensus 218 ~l~---------~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 218 RIT---------HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCC---------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred cce---------ecCHHHhcCCCCCEEEeeCCcCC
Confidence 532 22334566899999999998764
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=3.8e-10 Score=115.75 Aligned_cols=102 Identities=23% Similarity=0.326 Sum_probs=53.9
Q ss_pred CCcEEEecCccccccccc--ccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEec
Q 038494 568 DLKVLSLSGIHFSSLSSS--LGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDL 642 (1209)
Q Consensus 568 ~Lr~L~L~~~~i~~lp~~--i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l 642 (1209)
.|++|++++|.++.++.. ++.+++|++|++++|.++.+ ..+.++++|++|++++|.++.++.. +.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 455555555555554432 55555555555555555554 3455555555555555555544332 455555555555
Q ss_pred cCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 643 SNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 643 ~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
++ +.++.+++..+..+++|++|++++|
T Consensus 110 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 110 YD-NQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CS-SCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CC-CcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 55 3444444444555555555555544
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.09 E-value=7.2e-10 Score=119.33 Aligned_cols=184 Identities=11% Similarity=0.166 Sum_probs=118.3
Q ss_pred cccchhhHHHHHHHHHHHHhCCC-ceEEEEEcCCCChHHHHHHHHHHHHhhcccCC-------------------EEEEE
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDK-LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD-------------------KVVMA 216 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~-------------------~~~wv 216 (1209)
....|+||+..++.+.+++.... .+.+.|+|++|+||||+|+.+++.......+. ..+.+
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 35679999999999999987543 35789999999999999999998775422110 11111
Q ss_pred EcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccc
Q 038494 217 EVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 217 ~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~ 290 (1209)
...... . ......+.+.+. .+++.+||+||++... .++.+...+....
T Consensus 101 ~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~---- 154 (250)
T 1njg_A 101 DAASRT-K---------------------VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP---- 154 (250)
T ss_dssp ETTCGG-G---------------------HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC----
T ss_pred cCcccc-c---------------------HHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC----
Confidence 111110 1 122222322221 2467999999998742 3333322222112
Q ss_pred ccccCCcEEEEeccchhhh-cccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 291 KQDLRRRTIILTSRSKHLL-TNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
.+..+|+||+..... .........+++++++.+|..+++...+..... .-..+..+.|++.++|.|..+..+..
T Consensus 155 ----~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 155 ----EHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp ----TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----CceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567788888765422 111233578999999999999999987752221 22346778999999999999888765
Q ss_pred HH
Q 038494 370 AL 371 (1209)
Q Consensus 370 ~l 371 (1209)
.+
T Consensus 230 ~~ 231 (250)
T 1njg_A 230 QA 231 (250)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.08 E-value=1.4e-10 Score=117.15 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=49.8
Q ss_pred CCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-cc-ccCCCCCCEEEccCCCCCccch--hccCCCCCCEEecc
Q 038494 568 DLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AA-IGQLKKLEILSFRYSDIKQLPL--EIGQLAQLQLLDLS 643 (1209)
Q Consensus 568 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~-i~~L~~L~~L~l~~~~~~~lp~--~i~~L~~L~~L~l~ 643 (1209)
+|++|++++|.++.+ ..++.+++|++|++++|.++.+ .. ++.+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEec
Confidence 555555555555544 3455555555555555555544 22 2455555555555555555544 45555555555555
Q ss_pred CCCCCcccCch---hhcCCCCCcEEECCC
Q 038494 644 NCSSLVVIAPN---VISKFSRLEELYMGD 669 (1209)
Q Consensus 644 ~~~~l~~~~~~---~l~~L~~L~~L~l~~ 669 (1209)
+ +.+...+.. .+..+++|+.|+++.
T Consensus 122 ~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 122 R-NPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp S-SGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred C-CCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 5 333333322 244455555555443
No 136
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.07 E-value=1.9e-10 Score=104.69 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHhchhHHHHhhcc-ccchHHHHHHHHHHHHHHHhh
Q 038494 10 FSGIVTEGAKALFEPIMRQISYVFKYQSYIAELKVQVKELEYKRERVGIPVREATQQR-DEIYKDVADWLNNVDEFISEG 88 (1209)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~-~~~~~~~~~wl~~~~~~~~d~ 88 (1209)
+.++++++++.+.. ....+.++++++++|+++|++|++||.+|+++. ...++.++.|+++||+++||+
T Consensus 3 v~~ll~KL~~ll~~-----------E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ 71 (115)
T 3qfl_A 3 ISNLIPKLGELLTE-----------EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVI 71 (115)
T ss_dssp TCSHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 34555665544433 335677999999999999999999999998763 346899999999999999999
Q ss_pred hchhhhhhhhhh
Q 038494 89 VAKSIIDDEDRA 100 (1209)
Q Consensus 89 ~~ed~ld~~~~~ 100 (1209)
||++|+|.+.
T Consensus 72 --ED~iD~f~~~ 81 (115)
T 3qfl_A 72 --EDVVDKFLVQ 81 (115)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 9999998543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=3e-10 Score=114.81 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=109.3
Q ss_pred hcCCeEEEEccCCCCccCCCcCCCC-CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccc-cCCCCCcE
Q 038494 517 IQKGAIAISIPYGDIQELPERLECP-QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSL-GHLINLQT 594 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l~~L~~ 594 (1209)
...+++.+.+.++.+..++....+. +|++|++++|. +..+ ..|..+++|++|++++|.++.+|..+ +.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~--l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE--IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC--CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC--CCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3567899999999999887765555 99999999984 4445 34789999999999999999998655 89999999
Q ss_pred EeccCcccCCc-c--cccCCCCCCEEEccCCCCCccchh----ccCCCCCCEEeccCCC
Q 038494 595 LCLDWCQLEDV-A--AIGQLKKLEILSFRYSDIKQLPLE----IGQLAQLQLLDLSNCS 646 (1209)
Q Consensus 595 L~l~~~~l~~l-~--~i~~L~~L~~L~l~~~~~~~lp~~----i~~L~~L~~L~l~~~~ 646 (1209)
|++++|.+..+ . .++.+++|++|++++|.+..+|.. +..+++|++|+++.+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999887 3 689999999999999999999885 8999999999998843
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.03 E-value=1.9e-10 Score=131.49 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=80.7
Q ss_pred CccEEEeccCCCcccccCh----hhhcCCC-CCcEEEecCcccccc-cccccCC-----CCCcEEeccCcccCCc--c--
Q 038494 542 QLKLLLLLANGDSYLEISH----LFFEGTE-DLKVLSLSGIHFSSL-SSSLGHL-----INLQTLCLDWCQLEDV--A-- 606 (1209)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~----~~~~~l~-~Lr~L~L~~~~i~~l-p~~i~~l-----~~L~~L~l~~~~l~~l--~-- 606 (1209)
+|++|++++|. +...+. ..|.+++ +|++|+|++|.++.. +..+..+ .+|++|++++|.+... .
T Consensus 23 ~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 23 GVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 36666666653 333333 4455666 677777777766643 3344443 6677777777766543 2
Q ss_pred --cccCC-CCCCEEEccCCCCCccchh-----ccC-CCCCCEEeccCCCCCcccCch----hhcCCC-CCcEEECCCCCC
Q 038494 607 --AIGQL-KKLEILSFRYSDIKQLPLE-----IGQ-LAQLQLLDLSNCSSLVVIAPN----VISKFS-RLEELYMGDSFP 672 (1209)
Q Consensus 607 --~i~~L-~~L~~L~l~~~~~~~lp~~-----i~~-L~~L~~L~l~~~~~l~~~~~~----~l~~L~-~L~~L~l~~~~~ 672 (1209)
.+..+ ++|++|++++|.+...+.. +.. .++|++|++++ +.+...... .+..++ +|++|++++|..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 23333 6677777777666644321 233 24677777766 344422211 133443 677777766532
Q ss_pred ccccccCCCc-cchhhhCCC-CCCCEEEeeccCC
Q 038494 673 QWDKVEGGSN-ASLAELKGL-SKLTTLEIQVQDA 704 (1209)
Q Consensus 673 ~~~~~~~~~~-~~l~~L~~l-~~L~~L~l~~~~~ 704 (1209)
..... .....+... ++|+.|+++.+.+
T Consensus 180 -----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 180 -----ASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp -----GGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred -----chhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 11111 111233444 3677777766543
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.03 E-value=4.2e-10 Score=128.60 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=106.1
Q ss_pred ccccChhhhcCCCCCcEEEecCccccccc-----ccccCCC-CCcEEeccCcccCCc--ccccCC-----CCCCEEEccC
Q 038494 555 YLEISHLFFEGTEDLKVLSLSGIHFSSLS-----SSLGHLI-NLQTLCLDWCQLEDV--AAIGQL-----KKLEILSFRY 621 (1209)
Q Consensus 555 ~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~L~~L~l~~~~l~~l--~~i~~L-----~~L~~L~l~~ 621 (1209)
+....+.++...++|++|+|++|.++..+ ..+..++ +|++|++++|.+... ..+..+ ++|++|++++
T Consensus 10 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 10 GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcC
Confidence 33344555666777999999999998765 6778888 999999999998775 555554 9999999999
Q ss_pred CCCCccchh-----ccCC-CCCCEEeccCCCCCcccCchhh----cC-CCCCcEEECCCCCCccccccCCC-ccchhhhC
Q 038494 622 SDIKQLPLE-----IGQL-AQLQLLDLSNCSSLVVIAPNVI----SK-FSRLEELYMGDSFPQWDKVEGGS-NASLAELK 689 (1209)
Q Consensus 622 ~~~~~lp~~-----i~~L-~~L~~L~l~~~~~l~~~~~~~l----~~-L~~L~~L~l~~~~~~~~~~~~~~-~~~l~~L~ 689 (1209)
|.+...+.. +..+ ++|++|++++ +.++..+...+ .. .++|++|++++|... ... ......+.
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~~~~~l~~~l~ 163 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG-----IKSSDELIQILA 163 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG-----GSCHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC-----HHHHHHHHHHHh
Confidence 998855433 5556 8999999999 55776665443 33 369999999987431 111 12223345
Q ss_pred CCC-CCCEEEeeccCCCC
Q 038494 690 GLS-KLTTLEIQVQDAQM 706 (1209)
Q Consensus 690 ~l~-~L~~L~l~~~~~~~ 706 (1209)
.++ +|+.|+++++.+..
T Consensus 164 ~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp TSCTTCCEEECTTSCGGG
T ss_pred cCCccccEeeecCCCCch
Confidence 555 89999998876543
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.03 E-value=1e-09 Score=112.46 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=106.9
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccCh-hhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccC
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISH-LFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDW 599 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~ 599 (1209)
+.+.++++.+..+|... ..++++|++.+| .+..++. ..|..+++|++|+|++|.++.+ |..+..+.+|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n--~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCC--cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57888889998888755 349999999998 4566665 3578999999999999999977 67899999999999999
Q ss_pred cccCCc--ccccCCCCCCEEEccCCCCCcc-chhccCCCCCCEEeccCCCCCc
Q 038494 600 CQLEDV--AAIGQLKKLEILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLV 649 (1209)
Q Consensus 600 ~~l~~l--~~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~ 649 (1209)
|.++.+ ..+.++++|++|++++|.++.+ |..+..+++|++|++++ +.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS-NPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT-CCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC-CCcc
Confidence 999988 4589999999999999999966 67799999999999998 4443
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.02 E-value=1.7e-09 Score=110.68 Aligned_cols=120 Identities=23% Similarity=0.342 Sum_probs=105.1
Q ss_pred EEEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCc
Q 038494 522 IAISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWC 600 (1209)
Q Consensus 522 r~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~ 600 (1209)
+.+...++.+..+|... .+++++|++.+|. +..++ ..|.++++|++|+|++|.++.++. .|..+.+|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~--i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ--FTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC--CCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc--CchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46778888888888754 4799999999984 55677 467899999999999999998864 7999999999999999
Q ss_pred ccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCC
Q 038494 601 QLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNC 645 (1209)
Q Consensus 601 ~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~ 645 (1209)
.++.+ ..+.++++|++|++++|.++.+|.. +..+++|++|+++++
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 99988 5699999999999999999999875 889999999999983
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=2.4e-09 Score=108.28 Aligned_cols=119 Identities=24% Similarity=0.310 Sum_probs=62.6
Q ss_pred EEEccCCCCccCCCcCCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccccccc-ccCCCCCcEEeccCcc
Q 038494 523 AISIPYGDIQELPERLECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSS-LGHLINLQTLCLDWCQ 601 (1209)
Q Consensus 523 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 601 (1209)
.+...++.+..+|... .+++++|++.++. +..++...|.++++|++|++++|.++.+|.. +..+.+|++|++++|.
T Consensus 11 ~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSCCTTC-CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccCCCCC-CCCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4555555555555332 2455566655552 3344444455555566666665555555432 4555555555555555
Q ss_pred cCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccC
Q 038494 602 LEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSN 644 (1209)
Q Consensus 602 l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~ 644 (1209)
++.+ ..+.++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 5554 2245555555555555555555443 24455555555555
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=1.1e-09 Score=131.81 Aligned_cols=119 Identities=21% Similarity=0.235 Sum_probs=83.5
Q ss_pred ccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEEccCC
Q 038494 543 LKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILSFRYS 622 (1209)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~l~~~ 622 (1209)
|++|++++| .+..+|. |.++++|++|+|++|.++.+|..++.+++|++|++++|.++.++.++++++|++|++++|
T Consensus 443 L~~L~Ls~n--~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHK--DLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTS--CCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred ceEEEecCC--CCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence 555555555 2334443 567778888888888888888788888888888888888777777777888888888888
Q ss_pred CCCcc--chhccCCCCCCEEeccCCCCCcccCch---hhcCCCCCcEEE
Q 038494 623 DIKQL--PLEIGQLAQLQLLDLSNCSSLVVIAPN---VISKFSRLEELY 666 (1209)
Q Consensus 623 ~~~~l--p~~i~~L~~L~~L~l~~~~~l~~~~~~---~l~~L~~L~~L~ 666 (1209)
.++.+ |..++++++|++|++++ +.++..|+. .+..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 77766 67777888888888877 556555442 122356666664
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=4.2e-09 Score=106.48 Aligned_cols=122 Identities=19% Similarity=0.313 Sum_probs=82.3
Q ss_pred ccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEc
Q 038494 543 LKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 619 (1209)
Q Consensus 543 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l 619 (1209)
.+.+++.++ ....+|..+ .+.|++|++++|.++.+|. .++.+++|++|++++|.++.+ ..+..+++|++|++
T Consensus 9 ~~~l~~~~~--~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSK--GLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSS--CCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCC--CCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 345565555 344455433 3577778888777776665 457777777887777777766 33677777777777
Q ss_pred cCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 620 RYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 620 ~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
++|.++.+|.. +.++++|++|++++ +.++.+++..+..+++|++|++++|
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCC
Confidence 77777776654 56777777777777 4666666665566777777777665
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.93 E-value=2.6e-09 Score=128.48 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=102.3
Q ss_pred CCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEccCCCCCccchhccCCCCCCEEeccCCC
Q 038494 568 DLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFRYSDIKQLPLEIGQLAQLQLLDLSNCS 646 (1209)
Q Consensus 568 ~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1209)
.|++|+|++|.++.+|. ++.+++|++|++++|.++.+ ..++++++|++|++++|.++.+| .++++++|++|++++ +
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-N 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-S
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-C
Confidence 59999999999999997 99999999999999999988 88999999999999999999998 899999999999999 6
Q ss_pred CCcccC-chhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEEE
Q 038494 647 SLVVIA-PNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTLE 698 (1209)
Q Consensus 647 ~l~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L~ 698 (1209)
.++.++ +..++.+++|++|++++|... +..+....-...+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~-----~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLC-----QEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG-----GSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCC-----CCccHHHHHHHHCcccCccC
Confidence 788874 556999999999999987431 11111112234467777775
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.92 E-value=9.9e-10 Score=136.70 Aligned_cols=115 Identities=25% Similarity=0.322 Sum_probs=103.0
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEE
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEIL 617 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L 617 (1209)
.+++|++|++++|. +..++..++ ++++|++|+|++|.++.+|..|++|.+|++|+|++|.++.+ ..+++|.+|++|
T Consensus 222 ~l~~L~~L~Ls~n~--l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ--IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSC--CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCC--CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 68899999999984 567887776 89999999999999999999999999999999999999988 789999999999
Q ss_pred EccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhc
Q 038494 618 SFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVIS 657 (1209)
Q Consensus 618 ~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~ 657 (1209)
++++|.++.+|..+++|++|++|++++ +.++..++..+.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~ 337 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILT 337 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCC-CccCCCChHHHh
Confidence 999999999999999999999999999 567666555444
No 147
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=4.7e-09 Score=118.00 Aligned_cols=190 Identities=13% Similarity=0.150 Sum_probs=118.0
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
+.....|+||+..++.+.+++..+..+.+.|+|++|+|||++|+.+++..........+++++.++......+ +.+++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3345679999999999999998776656999999999999999999988643221123455555443333222 222221
Q ss_pred hCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchhhh-cc
Q 038494 235 LDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL-TN 311 (1209)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~ 311 (1209)
+..... .+..+++.+||+||++... .++.+...+.... .+.++|+||+..... ..
T Consensus 96 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~--------~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 96 FAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYS--------NSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT--------TTEEEEEEESCGGGSCHH
T ss_pred HHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccC--------CCceEEEEeCChhhchhH
Confidence 110000 0002468999999998752 2333322221111 567788887664321 11
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhH-HHHHH
Q 038494 312 DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVA-LSTVA 368 (1209)
Q Consensus 312 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa-i~~~~ 368 (1209)
.......+.+.+++.++..+++...+..... .-..+.+..|++.++|.|.. +..+.
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1234468999999999999999887642111 12246778999999999954 44443
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=6.8e-11 Score=122.22 Aligned_cols=102 Identities=24% Similarity=0.292 Sum_probs=51.7
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCcccccCCCCCCEEE
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDVAAIGQLKKLEILS 618 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l~~i~~L~~L~~L~ 618 (1209)
.+++|++|++++| .+..++ .+.++++|++|++++|.++.+|..+..+++|++|++++|.++.++.++++++|++|+
T Consensus 46 ~l~~L~~L~ls~n--~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTN--NIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEE--EESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred cCCCCCEEECCCC--CCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 3455555555554 233333 234455555555555555555554444555555555555555544455555555555
Q ss_pred ccCCCCCccch--hccCCCCCCEEeccC
Q 038494 619 FRYSDIKQLPL--EIGQLAQLQLLDLSN 644 (1209)
Q Consensus 619 l~~~~~~~lp~--~i~~L~~L~~L~l~~ 644 (1209)
+++|.++.+|. .+.++++|++|++++
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 55555554432 345555555555554
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=9e-11 Score=121.25 Aligned_cols=153 Identities=22% Similarity=0.260 Sum_probs=114.1
Q ss_pred CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc-ccccCCCCCCEEEcc
Q 038494 542 QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV-AAIGQLKKLEILSFR 620 (1209)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l-~~i~~L~~L~~L~l~ 620 (1209)
.++...+.+....+..++. .|.++++|++|++++|.++.+| .+..+++|++|++++|.++.+ ..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 4455555544323445554 5688999999999999999998 899999999999999999888 666778999999999
Q ss_pred CCCCCccchhccCCCCCCEEeccCCCCCcccCc-hhhcCCCCCcEEECCCCCCccccccC-C-CccchhhhCCCCCCCEE
Q 038494 621 YSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAP-NVISKFSRLEELYMGDSFPQWDKVEG-G-SNASLAELKGLSKLTTL 697 (1209)
Q Consensus 621 ~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~-~~l~~L~~L~~L~l~~~~~~~~~~~~-~-~~~~l~~L~~l~~L~~L 697 (1209)
+|.++.+| .+.++++|++|++++ +.+..++. ..+..+++|++|++++|......... . .......+..+++|+.|
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCcCCcCC-ccccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999987 688999999999999 56766554 45889999999999887421100000 0 00111236677888887
Q ss_pred E
Q 038494 698 E 698 (1209)
Q Consensus 698 ~ 698 (1209)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 6
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=1e-08 Score=102.54 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=73.0
Q ss_pred CcEEEecCcccccccccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCC
Q 038494 569 LKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNC 645 (1209)
Q Consensus 569 Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~ 645 (1209)
.+.++++++.++.+|..+. .+|++|++++|.++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4677777777777776653 6778888888877776 4577778888888888877777665 46778888888877
Q ss_pred CCCcccCchhhcCCCCCcEEECCCC
Q 038494 646 SSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 646 ~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
+.++.+++..+.++++|++|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 5677777666777777777777665
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.84 E-value=1e-08 Score=102.84 Aligned_cols=98 Identities=21% Similarity=0.398 Sum_probs=67.7
Q ss_pred cEEEecCcccccccccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCC
Q 038494 570 KVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCS 646 (1209)
Q Consensus 570 r~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~ 646 (1209)
+.++++++.++.+|..+. .+|++|++++|.++.+ ..+.++++|++|++++|.++.+|.. +.++++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 567777777777776554 6777777777777666 4567777777777777777777665 36777777777777 5
Q ss_pred CCcccCchhhcCCCCCcEEECCCC
Q 038494 647 SLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 647 ~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
.++.+++..+..+++|++|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 666666655666777777776655
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=2.5e-08 Score=100.00 Aligned_cols=102 Identities=21% Similarity=0.271 Sum_probs=69.8
Q ss_pred cEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCcccCCc-c-cccCCCCCCEEEcc
Q 038494 544 KLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWCQLEDV-A-AIGQLKKLEILSFR 620 (1209)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~l~~l-~-~i~~L~~L~~L~l~ 620 (1209)
+.+++.++ ....+|..+ .+.|++|+|++|.++.+ |..+..+++|++|+|++|.++.+ . .+.++++|++|+++
T Consensus 15 ~~l~~~~n--~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNI--RLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSS--CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCC--CCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 44555554 344455433 26777777777777766 45677777888888888877777 3 35777888888888
Q ss_pred CCCCCccchh-ccCCCCCCEEeccCCCCCccc
Q 038494 621 YSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVI 651 (1209)
Q Consensus 621 ~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~ 651 (1209)
+|.++.+|.. +.++++|++|++++ +.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYN-NPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCS-SCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCC-CCcccc
Confidence 8877777765 77788888888877 444443
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.69 E-value=3.6e-07 Score=99.40 Aligned_cols=172 Identities=10% Similarity=0.089 Sum_probs=109.0
Q ss_pred chhhHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhhccc---C-C-EEEEEEcCCCcCHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV---F-D-KVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~---f-~-~~~wv~~s~~~~~~~l~~~ 230 (1209)
.+.||+++++.+...|. .+..+.+.|+|++|+|||++|+.++++...... . . ..+++++..-.+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 47899999999998776 456678999999999999999999998864211 1 1 4567887787888999999
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHH--hcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCc--EEEEeccch
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRL--TKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRR--TIILTSRSK 306 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s--~ilvTtR~~ 306 (1209)
|++++.............+..+...+ ..++++++++|+++...+-+.+...+.+ ....++ .||.++...
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~-------~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW-------ISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH-------HHCSSCCEEEEEECCSS
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc-------ccccCCcEEEEEEecCc
Confidence 99999654322222244455555554 2357899999999876421111111100 000222 233334332
Q ss_pred hhhcc----cC---CcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 307 HLLTN----DM---NSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 307 ~v~~~----~~---~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
+.... .. -....+.+.+++.+|-.+++.+++.
T Consensus 174 d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 174 VTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 21110 00 1125799999999999999998874
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.69 E-value=6.2e-08 Score=96.76 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=68.2
Q ss_pred cEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-cccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEcc
Q 038494 544 KLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-SSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFR 620 (1209)
Q Consensus 544 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~ 620 (1209)
++++++++ ....+|..+ .+.|++|+|++|.++.+ |..+..+.+|++|++++|.++.+ ..+.++++|++|+++
T Consensus 12 ~~l~~s~n--~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGK--SLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTS--CCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC--CcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 44555554 234444433 36677777777777766 45677777888888888777776 345777888888888
Q ss_pred CCCCCccchh-ccCCCCCCEEeccCCCCCc
Q 038494 621 YSDIKQLPLE-IGQLAQLQLLDLSNCSSLV 649 (1209)
Q Consensus 621 ~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~ 649 (1209)
+|.++.+|.. +.++++|++|++++ +.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~-N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLN-NPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCC-CCCC
Confidence 8877777664 77788888888877 4443
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=3.9e-08 Score=110.68 Aligned_cols=189 Identities=13% Similarity=0.139 Sum_probs=116.9
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
....++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.......-...+.+..++......+.. .+
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~---- 97 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIRE-KV---- 97 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHH-HH----
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHH-HH----
Confidence 3567899999999999999877666799999999999999999998864321111234444443211111111 01
Q ss_pred CCCCCCCChHHHHHHHHHH--HhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchhhh-cc
Q 038494 237 LNFDLNDSKPHRAKQLCQR--LTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL-TN 311 (1209)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~--l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~ 311 (1209)
...... +..+++.++|+||++... .++.+...+.... .+.++|+||...... ..
T Consensus 98 -------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~--------~~~~~i~~~~~~~~l~~~ 156 (327)
T 1iqp_A 98 -------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS--------SNVRFILSCNYSSKIIEP 156 (327)
T ss_dssp -------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT--------TTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC--------CCCeEEEEeCCccccCHH
Confidence 110000 111467899999998752 2333322221111 567788888764321 11
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHh
Q 038494 312 DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANALK 372 (1209)
Q Consensus 312 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 372 (1209)
.......+.+.+++.++..+++...+..... .-..+..+.|++.++|.|..+..+...+.
T Consensus 157 l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 157 IQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp HHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 1123458899999999999999887653221 12346778999999999987665554433
No 156
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=2.4e-07 Score=103.71 Aligned_cols=187 Identities=11% Similarity=0.151 Sum_probs=115.6
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHh
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDL 235 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l 235 (1209)
.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.......-...+.++.+.......+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-------- 85 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVV-------- 85 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTS--------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHH--------
Confidence 335679999999999999988766656899999999999999999988632211012233444432111100
Q ss_pred CCCCCCCCChHHHHHHHHHH--HhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh-hhc
Q 038494 236 DLNFDLNDSKPHRAKQLCQR--LTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH-LLT 310 (1209)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~--l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~ 310 (1209)
.......... +..+++.++|+||++... ..+.+...+.... .+.++|+||.... +..
T Consensus 86 ----------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~--------~~~~~i~~~~~~~~l~~ 147 (319)
T 2chq_A 86 ----------RHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS--------KSCRFILSCNYVSRIIE 147 (319)
T ss_dssp ----------SHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS--------SSEEEEEEESCGGGSCH
T ss_pred ----------HHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC--------CCCeEEEEeCChhhcch
Confidence 1111111100 112467899999998752 2333433332222 5667777776543 211
Q ss_pred ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 311 NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 311 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
........+.+.+++.++..+++...+..... .-..+..+.|++.++|.+..+.....
T Consensus 148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11234468999999999999999887753222 12356677899999999886655443
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.46 E-value=6.4e-07 Score=100.50 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=58.0
Q ss_pred CCCCCEEEccCCCCCccchh-ccCCCCCCEEeccCCCCCcccCchhhcCCCCCc-EEECCCCCCccccccCCCccchhhh
Q 038494 611 LKKLEILSFRYSDIKQLPLE-IGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLE-ELYMGDSFPQWDKVEGGSNASLAEL 688 (1209)
Q Consensus 611 L~~L~~L~l~~~~~~~lp~~-i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~~l~~L 688 (1209)
+.+|+.|++++|.++.+|.. +.++.+|+.+++.. + ++.++...|.++.+|+ .+.+..... .+ ....+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~~l~---~I------~~~aF 293 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPASVT---AI------EFGAF 293 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECTTCC---EE------CTTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcccce---EE------chhhh
Confidence 56777777777777777654 67777777777776 2 6667777777777777 777654211 00 12345
Q ss_pred CCCCCCCEEEeeccCCCCCCcc
Q 038494 689 KGLSKLTTLEIQVQDAQMLPQD 710 (1209)
Q Consensus 689 ~~l~~L~~L~l~~~~~~~~~~~ 710 (1209)
.++.+|+.+.+..+.+..++..
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDE 315 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTT
T ss_pred hCCccCCEEEeCCCccCccchh
Confidence 6677777777766666555543
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.45 E-value=8.2e-07 Score=101.80 Aligned_cols=195 Identities=11% Similarity=0.136 Sum_probs=112.9
Q ss_pred ccchhhHHHHHHHHHHHHhCCC-ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhC
Q 038494 158 FEAFDSRMKLFQDVVEALRNDK-LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLD 236 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~ 236 (1209)
...++||+..++.+.+++..+. ...+.|+|++|+||||+|+.+++.......+.. ..+... .....+.....
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS----HHHHHHHTSCC
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc----HHHHHHhccCC
Confidence 4568999999999999987554 357889999999999999999988754221100 000000 00011111000
Q ss_pred -----CCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccc
Q 038494 237 -----LNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS 305 (1209)
Q Consensus 237 -----~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 305 (1209)
....... ..+..+.+.+.+. .+++.+||+||++... .++.+...+.... .+..+|++|..
T Consensus 88 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~--------~~~~~Il~~~~ 158 (373)
T 1jr3_A 88 VDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP--------EHVKFLLATTD 158 (373)
T ss_dssp SSCEEEETTCSC-CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC--------SSEEEEEEESC
T ss_pred CceEEecccccC-CHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC--------CceEEEEEeCC
Confidence 0000000 0112333444333 2457899999998652 2333322221111 45667777654
Q ss_pred hh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 306 KH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 306 ~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
.. +..........+++.+++.++..+++.+.+..... .-..+.+..|++.++|.|..+..+..
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 43 22112234578999999999999999877642111 12245677899999999998776653
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.42 E-value=3.4e-07 Score=93.81 Aligned_cols=153 Identities=14% Similarity=0.195 Sum_probs=88.8
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcc-----cCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK-----VFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-----~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
...|+||+++++.+.+++.....+.+.|+|++|+|||++|+.+++...... ....+++++++. +.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---- 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV---- 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH----
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh----
Confidence 557899999999999999876667889999999999999999998875311 112345554321 10
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHh-cCCeEEEEEeCCCcccC---------ccccCCCCCCCCccccccccCCcEEEEe
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLT-KEKRVLIILDNIWKKLG---------LEEIGIPFGDVDEKDRKQDLRRRTIILT 302 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilvT 302 (1209)
... ............+...+. .+++.+||+||++.... +..+...+ ....+..+|+|
T Consensus 91 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~---------~~~~~~~~i~~ 157 (195)
T 1jbk_A 91 ---AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA---------LARGELHCVGA 157 (195)
T ss_dssp ---TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHH---------HHTTSCCEEEE
T ss_pred ---ccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh---------hccCCeEEEEe
Confidence 000 000001222333333332 35678999999987521 01100000 01134556666
Q ss_pred ccchhhh------cccCCcceEEEcCCCCHHHHHHHH
Q 038494 303 SRSKHLL------TNDMNSQKIFLIEVLSKEEALQFF 333 (1209)
Q Consensus 303 tR~~~v~------~~~~~~~~~~~l~~L~~~e~~~lf 333 (1209)
|...... .........+.+.+++.++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 6654311 111223347889999998877654
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.40 E-value=6.1e-07 Score=101.66 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=53.9
Q ss_pred EEecCc-ccccccccccCCCCCcEEeccC-cccCCc--ccccCCCCCCEEEccCCCCCccch-hccCCCCCCEEeccCCC
Q 038494 572 LSLSGI-HFSSLSSSLGHLINLQTLCLDW-CQLEDV--AAIGQLKKLEILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCS 646 (1209)
Q Consensus 572 L~L~~~-~i~~lp~~i~~l~~L~~L~l~~-~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 646 (1209)
++++++ .++.+|. +..+.+|++|+|++ |.++.+ ..|++|.+|++|+|++|.++.+|+ .+.+|++|++|++++ +
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-N 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-S
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-C
Confidence 355555 5555665 66666666666664 555555 345566666666666666655543 345666666666666 4
Q ss_pred CCcccCchhhcCCCCCcEEECCCC
Q 038494 647 SLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 647 ~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
.++.+|+..+..+. |+.|++.+|
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSS
T ss_pred ccceeCHHHcccCC-ceEEEeeCC
Confidence 55555554344333 566655544
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=1.9e-06 Score=97.55 Aligned_cols=92 Identities=26% Similarity=0.289 Sum_probs=72.2
Q ss_pred ccccChhhhcCCCCCcEEEecC-ccccccc-ccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccchh
Q 038494 555 YLEISHLFFEGTEDLKVLSLSG-IHFSSLS-SSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLPLE 630 (1209)
Q Consensus 555 ~~~~~~~~~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp~~ 630 (1209)
...+|. +..+++|++|+|++ |.++.+| ..|+.|.+|++|+|++|.++.+ ..|.+|++|++|+|++|.++.+|..
T Consensus 21 l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 445666 67788888888886 8888776 4688888999999999888887 4678889999999999988888876
Q ss_pred ccCCCCCCEEeccCCCCCc
Q 038494 631 IGQLAQLQLLDLSNCSSLV 649 (1209)
Q Consensus 631 i~~L~~L~~L~l~~~~~l~ 649 (1209)
+.....|++|++.+ +.+.
T Consensus 99 ~~~~~~L~~l~l~~-N~~~ 116 (347)
T 2ifg_A 99 TVQGLSLQELVLSG-NPLH 116 (347)
T ss_dssp TTCSCCCCEEECCS-SCCC
T ss_pred HcccCCceEEEeeC-CCcc
Confidence 54444489999887 4443
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=5.6e-05 Score=86.51 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=87.7
Q ss_pred CCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCE
Q 038494 540 CPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEI 616 (1209)
Q Consensus 540 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~ 616 (1209)
+..+..+.+-. .+..+....|.++ +|+.+.+..+ ++.++. +|.++ +|+.+.+.. .++.+ ..|.++.+|+.
T Consensus 112 ~~~l~~i~ip~---~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPN---SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCT---TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECC---ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 35555555543 3556777777775 6888888765 666654 55564 688888875 56666 67888888999
Q ss_pred EEccCCCCCccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 617 LSFRYSDIKQLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 617 L~l~~~~~~~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
+++..|.++.+|...-...+|+.+.+.. .++.++...+.++++|+.+.+..
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred eecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 9988888888876644468888888874 47777777788888888888754
No 163
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.26 E-value=9.1e-06 Score=93.88 Aligned_cols=183 Identities=16% Similarity=0.214 Sum_probs=110.5
Q ss_pred ccccccchhhHHHHH---HHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 154 QAKDFEAFDSRMKLF---QDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.+.....++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++..... | ..+.... ....++ +.
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~i-r~ 93 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKEI-RE 93 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHHH-HH
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHHH-HH
Confidence 344567899998888 778888887777889999999999999999999876432 2 2222221 122222 11
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEE-eccchh
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIIL-TSRSKH 307 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv-TtR~~~ 307 (1209)
++ .........+++.+|++|+++... ..+.+...+.. ....+|. ||.+..
T Consensus 94 ~~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~----------~~v~lI~att~n~~ 146 (447)
T 3pvs_A 94 AI-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED----------GTITFIGATTENPS 146 (447)
T ss_dssp HH-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT----------TSCEEEEEESSCGG
T ss_pred HH-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc----------CceEEEecCCCCcc
Confidence 11 111111223578999999998762 22233222211 2233443 444432
Q ss_pred --hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCC------CCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 038494 308 --LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNS------AKASAFQPLADEIVGKCGGLPVALSTVANA 370 (1209)
Q Consensus 308 --v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~glPLai~~~~~~ 370 (1209)
+.........++.+.+++.++...++.+.+... ....-..+..+.|++.++|.+-.+..+...
T Consensus 147 ~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 147 FELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp GSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 111122345688999999999999998886531 111223567778999999988766655443
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.26 E-value=7.6e-07 Score=94.99 Aligned_cols=176 Identities=15% Similarity=0.172 Sum_probs=105.4
Q ss_pred ccchhhHH---HHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 158 FEAFDSRM---KLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 158 ~~~~~gR~---~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
...|+|++ ..++.+..+......+.+.|+|++|+||||+|+.+++..... ...+.|++++..... +.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~-- 96 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST-- 96 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG--
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH--
Confidence 45677643 556667666665566789999999999999999999887653 335677776542110 00
Q ss_pred hCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC----ccccCCCCCCCCccccccccCCc-EEEEeccchhhh
Q 038494 235 LDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG----LEEIGIPFGDVDEKDRKQDLRRR-TIILTSRSKHLL 309 (1209)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~s-~ilvTtR~~~v~ 309 (1209)
...+.+ .++.+||+||++.... .+.+...+... ...+. ++|+||+.....
T Consensus 97 ----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~-------~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 97 ----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRV-------AEQKRGSLIVSASASPME 151 (242)
T ss_dssp ----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHH-------HHHCSCEEEEEESSCTTT
T ss_pred ----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHH-------HHcCCCeEEEEcCCCHHH
Confidence 000111 2457899999986532 11121111000 00232 477777643210
Q ss_pred -----cccCC---cceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 310 -----TNDMN---SQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 310 -----~~~~~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
..... ....+.+++++.++..+++...+.... ..-..+..+.|++.++|.+-.+..+..
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 00011 126899999999999999988764211 122356778999999998877665543
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.25 E-value=5.3e-06 Score=90.81 Aligned_cols=182 Identities=16% Similarity=0.167 Sum_probs=106.2
Q ss_pred cccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
....++|.++.++.+.+++.. ...+.+.|+|++|+|||++|+.+++..... .+.+..+.-..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHHH
Confidence 366789999999998887642 345678999999999999999999876432 23333322110
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC----------------ccccCCCCCCCCc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG----------------LEEIGIPFGDVDE 287 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----------------~~~l~~~~~~~~~ 287 (1209)
. ...........+.......++.+|++||++.... +..+...+..
T Consensus 90 --------------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~--- 150 (285)
T 3h4m_A 90 --------------K--FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG--- 150 (285)
T ss_dssp --------------C--STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT---
T ss_pred --------------h--ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC---
Confidence 0 0011123334444444445678999999976410 0000000000
Q ss_pred cccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCC-Chh
Q 038494 288 KDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGG-LPV 362 (1209)
Q Consensus 288 ~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPL 362 (1209)
.....+..||.||.......... .....+.++..+.++..+++...+....... ......+++.+.| .|-
T Consensus 151 ---~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 151 ---FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE--DVNLEEIAKMTEGCVGA 225 (285)
T ss_dssp ---TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT--TCCHHHHHHHCTTCCHH
T ss_pred ---CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC--cCCHHHHHHHcCCCCHH
Confidence 00113566777776553321111 2235799999999999999998876332211 1124577788877 454
Q ss_pred HHHHH
Q 038494 363 ALSTV 367 (1209)
Q Consensus 363 ai~~~ 367 (1209)
.|..+
T Consensus 226 ~i~~l 230 (285)
T 3h4m_A 226 ELKAI 230 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.23 E-value=2.1e-05 Score=87.95 Aligned_cols=186 Identities=18% Similarity=0.153 Sum_probs=109.8
Q ss_pred cccchhhHHHHHHHHHHHHhC-----CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
....|+|++..++.+.+++.. .....+.|+|++|+|||++|+.+++.... ..+++..+......++...+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHHHH
Confidence 356799999999988888752 23467889999999999999999987642 23455554433332222111
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCC--------CCCcc-c-cccccCCcEE
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFG--------DVDEK-D-RKQDLRRRTI 299 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~--------~~~~~-~-~~~~~~~s~i 299 (1209)
.. .+ .++.+|++||++... ..+.+...+. ..... . ......+.++
T Consensus 85 ~~---------------------~~--~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 85 AN---------------------SL--EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp TT---------------------TC--CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred HH---------------------hc--cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 10 01 245688888887652 1111100000 00000 0 0000124556
Q ss_pred EEeccchhhhcc-cCCc-ceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 038494 300 ILTSRSKHLLTN-DMNS-QKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVANAL 371 (1209)
Q Consensus 300 lvTtR~~~v~~~-~~~~-~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 371 (1209)
|.||........ .... ...+.+.+++.+|...++...+..... .-..+..+.|++.++|.|-.+..+...+
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 666664432211 1122 258999999999999999887753221 2235678899999999998887776554
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.21 E-value=2.6e-06 Score=96.77 Aligned_cols=197 Identities=11% Similarity=0.132 Sum_probs=114.1
Q ss_pred ccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC-CEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF-DKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f-~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
.....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.......+ ..+..++.+.......+.. ....
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 112 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-KVKN 112 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-HHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-HHHH
Confidence 3456789999999999999987655558999999999999999999886421111 1234445444333333222 2211
Q ss_pred hC-CCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh-hhc
Q 038494 235 LD-LNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH-LLT 310 (1209)
Q Consensus 235 l~-~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~ 310 (1209)
+. ........ . .......+++-+|++|+++... ..+.+...+.... ...++|++|.... +..
T Consensus 113 ~~~~~~~~~~~-~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~--------~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 113 FARLTVSKPSK-H-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS--------GVTRFCLICNYVTRIID 178 (353)
T ss_dssp HHHSCCCCCCT-T-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT--------TTEEEEEEESCGGGSCH
T ss_pred Hhhhcccccch-h-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC--------CCceEEEEeCchhhCcc
Confidence 11 10000000 0 0000112355799999987652 1222221111111 3556777665432 211
Q ss_pred ccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHH
Q 038494 311 NDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVA 368 (1209)
Q Consensus 311 ~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 368 (1209)
........+.+.+++.++....+...+..... .-..+..+.|++.++|.|-.+..+.
T Consensus 179 ~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 179 PLASQCSKFRFKALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11123358899999999999999887642221 1235678899999999988655443
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.21 E-value=2.9e-07 Score=104.47 Aligned_cols=152 Identities=14% Similarity=0.027 Sum_probs=74.5
Q ss_pred hcCCeEEEEccCCCCccCCC-----cC--CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccc-----cc
Q 038494 517 IQKGAIAISIPYGDIQELPE-----RL--ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSL-----SS 584 (1209)
Q Consensus 517 ~~~~~r~l~l~~~~~~~~~~-----~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-----p~ 584 (1209)
....++.+.+.++.+..... .. ..++|++|++++|.... .-...++..+++|+.|+|++|.++.. ..
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 44567788887776643211 00 22466666666653111 11112223344566666666666422 11
Q ss_pred cc-cCCCCCcEEeccCcccCCc------ccccCCCCCCEEEccCCCCCc-----cchhccCCCCCCEEeccCCCCCcccC
Q 038494 585 SL-GHLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRYSDIKQ-----LPLEIGQLAQLQLLDLSNCSSLVVIA 652 (1209)
Q Consensus 585 ~i-~~l~~L~~L~l~~~~l~~l------~~i~~L~~L~~L~l~~~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~ 652 (1209)
.+ ....+|++|+|++|.++.. ..+..+++|++|++++|.+.. ++..+...++|++|++++| .++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHH
Confidence 12 2345566666666665431 333455666666666665542 2334455556666666663 333221
Q ss_pred c----hhhcCCCCCcEEECCCC
Q 038494 653 P----NVISKFSRLEELYMGDS 670 (1209)
Q Consensus 653 ~----~~l~~L~~L~~L~l~~~ 670 (1209)
. ..+...++|++|++++|
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHHHHHhCCCCCEEeccCC
Confidence 1 11233455556655554
No 169
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=4.1e-06 Score=93.91 Aligned_cols=166 Identities=11% Similarity=0.091 Sum_probs=112.1
Q ss_pred CCeEEEEccCCCCccCCCc--CCCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccc-------c---------
Q 038494 519 KGAIAISIPYGDIQELPER--LECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHF-------S--------- 580 (1209)
Q Consensus 519 ~~~r~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i-------~--------- 580 (1209)
.+++.+.+.. .+..++.. ..|++|+.+.+..+ .+..+++..|.++..+..+.+..... .
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n--~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK--TAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS--SCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCC--CccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 4555666655 55555543 26777777777766 34456666666666565555443110 0
Q ss_pred -----------ccccc---------------------------c-cCCCCCcEEeccCcccCCc--ccccCCCCCCEEEc
Q 038494 581 -----------SLSSS---------------------------L-GHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSF 619 (1209)
Q Consensus 581 -----------~lp~~---------------------------i-~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l 619 (1209)
.++.. + ..+.+|+.|++++|.++.+ ..|.++.+|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 00000 0 1378999999999999888 67999999999999
Q ss_pred cCCCCCccch-hccCCCCCC-EEeccCCCCCcccCchhhcCCCCCcEEECCCCCCccccccCCCccchhhhCCCCCCCEE
Q 038494 620 RYSDIKQLPL-EIGQLAQLQ-LLDLSNCSSLVVIAPNVISKFSRLEELYMGDSFPQWDKVEGGSNASLAELKGLSKLTTL 697 (1209)
Q Consensus 620 ~~~~~~~lp~-~i~~L~~L~-~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~l~~L~~L 697 (1209)
..+ ++.++. .+.++.+|+ .+++.. .++.++...|.++++|+++++..+.... . ....+.++++|+.+
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~--I------~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITT--L------GDELFGNGVPSKLI 326 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCE--E------CTTTTCTTCCCCEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCc--c------chhhhcCCcchhhh
Confidence 987 777765 488999999 999987 6778888889999999999986543211 0 12246677888876
Q ss_pred E
Q 038494 698 E 698 (1209)
Q Consensus 698 ~ 698 (1209)
.
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 5
No 170
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=4.1e-05 Score=82.48 Aligned_cols=183 Identities=13% Similarity=0.164 Sum_probs=99.2
Q ss_pred ccchhhHHHHHHHHHHHHh---C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEALR---N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
...++|.+..++.+.+++. . ...+.+.|+|++|+|||++|+.+++.... ..+.+..+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh-
Confidence 4567787777766655443 2 22356889999999999999999987643 1344554432110
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC-------------c----cccCCCCCCCCcc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG-------------L----EEIGIPFGDVDEK 288 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~----~~l~~~~~~~~~~ 288 (1209)
...........+........+.+|++||++.... . ..+...+...
T Consensus 79 ---------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~--- 140 (262)
T 2qz4_A 79 ---------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM--- 140 (262)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC---
T ss_pred ---------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc---
Confidence 0001122333444444445679999999986511 0 0010000000
Q ss_pred ccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh-H
Q 038494 289 DRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV-A 363 (1209)
Q Consensus 289 ~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-a 363 (1209)
....+..||.||.......... .....+.++..+.++-.+++...+...............+++.+.|.+- .
T Consensus 141 ---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 141 ---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp ---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH
T ss_pred ---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH
Confidence 0013455666665543221111 2236788999999999999988765322222222234678888887654 4
Q ss_pred HHHH
Q 038494 364 LSTV 367 (1209)
Q Consensus 364 i~~~ 367 (1209)
|..+
T Consensus 218 l~~l 221 (262)
T 2qz4_A 218 IANI 221 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 171
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.18 E-value=3e-05 Score=83.98 Aligned_cols=184 Identities=17% Similarity=0.184 Sum_probs=97.5
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Q 038494 177 NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRL 256 (1209)
Q Consensus 177 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 256 (1209)
......+.|+|++|+|||++|+.+++.... ..+ .+..+... ++.. ..........+....
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~~~-~i~~~~~~------------~g~~---~~~~~~~~~~~~~~~ 120 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNF----PFI-KICSPDKM------------IGFS---ETAKCQAMKKIFDDA 120 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTC----SEE-EEECGGGC------------TTCC---HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCC----CEE-EEeCHHHh------------cCCc---hHHHHHHHHHHHHHH
Confidence 345578899999999999999999987532 222 22222110 0000 000012223334433
Q ss_pred hcCCeEEEEEeCCCcccC------------ccccCCCCCCCCccccccccCCcEEEEeccchhhhcc--cCCc-ceEEEc
Q 038494 257 TKEKRVLIILDNIWKKLG------------LEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTN--DMNS-QKIFLI 321 (1209)
Q Consensus 257 ~~~k~~LlvlDdv~~~~~------------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~--~~~~-~~~~~l 321 (1209)
...++.+|++||++.... .+.+...+.... .......||.||........ .... ...+.+
T Consensus 121 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~-----~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~ 195 (272)
T 1d2n_A 121 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP-----PQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV 195 (272)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC-----STTCEEEEEEEESCHHHHHHTTCTTTSSEEEEC
T ss_pred HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc-----CCCCCEEEEEecCChhhcchhhhhcccceEEcC
Confidence 335789999999876411 011111111000 00023446667766533221 1122 467899
Q ss_pred CCCCH-HHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCC------ChhHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 038494 322 EVLSK-EEALQFFEKIVGNSAKASAFQPLADEIVGKCGG------LPVALSTVANALKNKKLPVWKDALTQLRNSNP 391 (1209)
Q Consensus 322 ~~L~~-~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g------lPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~ 391 (1209)
++++. ++...++.+.. . -..+....|++.+.| +.-++.++-..........+..+++.+.....
T Consensus 196 p~l~~r~~i~~i~~~~~--~----~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 196 PNIATGEQLLEALELLG--N----FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 266 (272)
T ss_dssp CCEEEHHHHHHHHHHHT--C----SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTSC
T ss_pred CCccHHHHHHHHHHhcC--C----CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcCC
Confidence 99988 66666665532 1 124567789999888 34444333333223355678888877766544
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.1e-05 Score=95.83 Aligned_cols=193 Identities=11% Similarity=0.062 Sum_probs=110.4
Q ss_pred cccccchhhHHHHHHHHHHHHhC-----------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRN-----------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE 217 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 217 (1209)
+.....++|++..++.+.+|+.. +..+.+.|+|++|+||||+|+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 34467899999999999999874 1346899999999999999999998873 2 244556
Q ss_pred cCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH-HhcCCeEEEEEeCCCcccCc-----cccCCCCCCCCccccc
Q 038494 218 VTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQR-LTKEKRVLIILDNIWKKLGL-----EEIGIPFGDVDEKDRK 291 (1209)
Q Consensus 218 ~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~k~~LlvlDdv~~~~~~-----~~l~~~~~~~~~~~~~ 291 (1209)
++...... +....+............ ....... ...+++.+|++|+++....- ..+...+
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l--------- 175 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMSVVGY----FKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC--------- 175 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCCSTTT----TTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH---------
T ss_pred CCCcchHH-HHHHHHHHHhccccHHHH----HhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH---------
Confidence 65544433 222222221111000000 0000000 01257789999999875321 1111111
Q ss_pred cccCCcEEEEeccchh--hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hhHHHHHH
Q 038494 292 QDLRRRTIILTSRSKH--LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PVALSTVA 368 (1209)
Q Consensus 292 ~~~~~s~ilvTtR~~~--v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~ 368 (1209)
...+..||+++.... ...........+.+.+++.++..+.+...+...... -..+....|++.++|. +-++..+.
T Consensus 176 -~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 176 -RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp -HHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred -HhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 012334555554322 111122345689999999999999998776421111 1134577899999995 45555553
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=6.4e-06 Score=93.47 Aligned_cols=196 Identities=10% Similarity=0.076 Sum_probs=106.8
Q ss_pred cccchhhHHHHHHHHHHHH-hCCCceEEEEEcCCCChHHHHHHHHHHHHhhcc----cCCE-------------------
Q 038494 157 DFEAFDSRMKLFQDVVEAL-RNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK----VFDK------------------- 212 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~------------------- 212 (1209)
....++|++..++.+.+++ ..+..+.+.|+|+.|+||||+|+.++....... .+++
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 3567899999999999988 655544589999999999999999998642111 0110
Q ss_pred -EEEEEcCCCc-CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCcc
Q 038494 213 -VVMAEVTENP-DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEK 288 (1209)
Q Consensus 213 -~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~ 288 (1209)
.+.+..+... ......+.+++.+......... . -...+. +++-++|+|+++... ..+.+...+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~--~ls~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~~~-- 162 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ----D--SKDGLA-HRYKCVIINEANSLTKDAQAALRRTMEKYS-- 162 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST--
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccccc----c--cccccC-CCCeEEEEeCccccCHHHHHHHHHHHHhhc--
Confidence 1111111100 0000122222222111100000 0 000011 356799999998752 1122221111111
Q ss_pred ccccccCCcEEEEeccchh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcc-hHHHHHHHHHhCCChhHHHH
Q 038494 289 DRKQDLRRRTIILTSRSKH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAF-QPLADEIVGKCGGLPVALST 366 (1209)
Q Consensus 289 ~~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~-~~~~~~i~~~~~glPLai~~ 366 (1209)
.+..+|++|.... +..........+++.+++.++..+.+...+...... -. .+.+..|++.++|.+-.+..
T Consensus 163 ------~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 163 ------KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp ------TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHHHHH
T ss_pred ------CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHHHHH
Confidence 4667887776643 222122345789999999999999998876421111 11 35677899999998876555
Q ss_pred HH
Q 038494 367 VA 368 (1209)
Q Consensus 367 ~~ 368 (1209)
+.
T Consensus 236 ~l 237 (354)
T 1sxj_E 236 ML 237 (354)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.08 E-value=4e-05 Score=86.39 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=106.2
Q ss_pred ccchhhHHHHHHHHHHHHhC------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEALRN------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
...++|.+..++.+.+++.. ...+.|.|+|++|+|||++|+.+++.... ..+.++++.-...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTSK- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhcc-
Confidence 56789999999988887641 23567899999999999999999887532 2345555421110
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC-------------ccccCCCCCCCCcccccc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG-------------LEEIGIPFGDVDEKDRKQ 292 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~~~~~~ 292 (1209)
...........+.......++.+|++|+++.... ...+...+.... ..
T Consensus 157 ---------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~----~~ 217 (357)
T 3d8b_A 157 ---------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT----TS 217 (357)
T ss_dssp ---------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--------
T ss_pred ---------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc----cc
Confidence 0001123333444444445679999999965411 011110000000 00
Q ss_pred ccCCcEEEEeccchhhhcc-cC-CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCC-ChhHHHHHHH
Q 038494 293 DLRRRTIILTSRSKHLLTN-DM-NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGG-LPVALSTVAN 369 (1209)
Q Consensus 293 ~~~~s~ilvTtR~~~v~~~-~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~ 369 (1209)
...+..||.||........ .. .....+.+...+.++..+++...+...... -..+....|++.+.| .+-.|..+..
T Consensus 218 ~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 218 SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 0023445556654322111 11 223578899999999999998876432111 124567789999988 4556665543
No 175
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.07 E-value=1.5e-05 Score=89.09 Aligned_cols=182 Identities=12% Similarity=0.074 Sum_probs=104.0
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
+.....++|++..++.+.+++..+.. .++.+.|++|+|||++|+.+++.... .++.++.+... ...+ +..+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~~-~~~i-~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDCK-IDFV-RGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTCC-HHHH-HTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEcccccC-HHHH-HHHHH
Confidence 33466899999999999999986554 56778888999999999999887632 34555654422 2222 22111
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc---CccccCCCCCCCCccccccccCCcEEEEeccchhhh-
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL---GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL- 309 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~- 309 (1209)
....... ..+++.+|++||++... ..+.+...+... ..+.++|+||......
T Consensus 95 ~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~--------~~~~~iI~~~n~~~~l~ 150 (324)
T 3u61_B 95 NFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY--------SSNCSIIITANNIDGII 150 (324)
T ss_dssp HHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH--------GGGCEEEEEESSGGGSC
T ss_pred HHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhC--------CCCcEEEEEeCCccccC
Confidence 1100000 01367899999998753 222221111111 1456788877664321
Q ss_pred cccCCcceEEEcCCCCHHHHHHHHHH-------HhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 310 TNDMNSQKIFLIEVLSKEEALQFFEK-------IVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 310 ~~~~~~~~~~~l~~L~~~e~~~lf~~-------~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.........+.+++++.+|-.+++.. .+......-+..+....|++.++|.+-.+...
T Consensus 151 ~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~ 215 (324)
T 3u61_B 151 KPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGE 215 (324)
T ss_dssp TTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHH
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHH
Confidence 11112335899999998885443322 22211111111266778888888876644433
No 176
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.06 E-value=6.8e-07 Score=101.43 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred CCccEEEeccCCCccc---ccChhhhcCCCCCcEEEecCccccc--ccccccCCCCCcEEeccCcccCCc--ccc-----
Q 038494 541 PQLKLLLLLANGDSYL---EISHLFFEGTEDLKVLSLSGIHFSS--LSSSLGHLINLQTLCLDWCQLEDV--AAI----- 608 (1209)
Q Consensus 541 ~~L~~L~l~~~~~~~~---~~~~~~~~~l~~Lr~L~L~~~~i~~--lp~~i~~l~~L~~L~l~~~~l~~l--~~i----- 608 (1209)
++|++|++++|..... .+...+....+.|+.|+|++|.++. +..-...+.+|++|+|++|.+... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566777766531111 0111111123567777777776652 122223345667777777766543 222
Q ss_pred cCCCCCCEEEccCCCCCc-----cchhccCCCCCCEEeccCCCCCcccC----chhhcCCCCCcEEECCCCCCccccccC
Q 038494 609 GQLKKLEILSFRYSDIKQ-----LPLEIGQLAQLQLLDLSNCSSLVVIA----PNVISKFSRLEELYMGDSFPQWDKVEG 679 (1209)
Q Consensus 609 ~~L~~L~~L~l~~~~~~~-----lp~~i~~L~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~~L~l~~~~~~~~~~~~ 679 (1209)
...++|++|++++|.+.. ++..+..+++|++|++++| .+.... ...+...++|++|++++|.+...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~---- 226 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT---- 226 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH----
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH----
Confidence 234667777777776642 3444566667777777763 343321 12245556677777766532100
Q ss_pred CCccchhhhCCCCCCCEEEeeccCCC
Q 038494 680 GSNASLAELKGLSKLTTLEIQVQDAQ 705 (1209)
Q Consensus 680 ~~~~~l~~L~~l~~L~~L~l~~~~~~ 705 (1209)
........+...++|+.|++++|.+.
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 00111223445566777777666543
No 177
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.05 E-value=8.7e-05 Score=82.17 Aligned_cols=189 Identities=16% Similarity=0.159 Sum_probs=108.3
Q ss_pred ccccchhhHHHHHHHHHHHHh------------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 156 KDFEAFDSRMKLFQDVVEALR------------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
....+++|.++.++.|.+.+. ....+.|.|+|++|+|||++|+.+++..... ..+.+..+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh
Confidence 346678888888888877663 1123678999999999999999999876211 223344432110
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcccc-----c---c---
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDR-----K---Q--- 292 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~-----~---~--- 292 (1209)
..........+.+.......++.+|++|+++....-..-. ......+ + .
T Consensus 85 ----------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 85 ----------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN----ESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp ----------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC----CTTHHHHHHHHHHHHHHCSS
T ss_pred ----------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc----cchHHHHHHHHHHHHHhccc
Confidence 0011114455555555555678999999998652100000 0000000 0 0
Q ss_pred -ccCCcEEEEeccchhhhcccC--CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hhHHHHHH
Q 038494 293 -DLRRRTIILTSRSKHLLTNDM--NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PVALSTVA 368 (1209)
Q Consensus 293 -~~~~s~ilvTtR~~~v~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~ 368 (1209)
...+..||.||.......... .....+.++..+.++-.+++..++...... -.......|++.+.|. +-.|..+.
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 013444555665443221111 233678899999999999999887533221 1245667899999887 44455554
Q ss_pred H
Q 038494 369 N 369 (1209)
Q Consensus 369 ~ 369 (1209)
.
T Consensus 224 ~ 224 (322)
T 1xwi_A 224 R 224 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.04 E-value=3.4e-05 Score=87.99 Aligned_cols=197 Identities=9% Similarity=0.059 Sum_probs=103.5
Q ss_pred ccchhhHHHHHHH---HHHHHhCCCc--eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcC----CCcCHHHHH
Q 038494 158 FEAFDSRMKLFQD---VVEALRNDKL--NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVT----ENPDVQKIQ 228 (1209)
Q Consensus 158 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s----~~~~~~~l~ 228 (1209)
...|+|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++.......| +.+... ......+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 6689999888666 4555554443 589999999999999999999988643222 222221 222333333
Q ss_pred HHHHHHh-CCC----------------------------CCCCC--C--hHHHHHHHHHHH-hcCC----eEEEEEeCCC
Q 038494 229 DKLASDL-DLN----------------------------FDLND--S--KPHRAKQLCQRL-TKEK----RVLIILDNIW 270 (1209)
Q Consensus 229 ~~i~~~l-~~~----------------------------~~~~~--~--~~~~~~~l~~~l-~~~k----~~LlvlDdv~ 270 (1209)
.+..+.. +.. ..... . ............ ..++ +.+|++|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333321 100 00000 0 011111122211 1233 3599999998
Q ss_pred ccc--CccccCCCCCCCCccccccccCCcEEEEecc-c-----------h-hhhcccCCcceEEEcCCCCHHHHHHHHHH
Q 038494 271 KKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSR-S-----------K-HLLTNDMNSQKIFLIEVLSKEEALQFFEK 335 (1209)
Q Consensus 271 ~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR-~-----------~-~v~~~~~~~~~~~~l~~L~~~e~~~lf~~ 335 (1209)
... ..+.+...+... ....++++|. . . .+..........+.+++++.++..+++..
T Consensus 200 ~l~~~~~~~L~~~le~~---------~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 200 MLDIESFSFLNRALESD---------MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp GSBHHHHHHHHHHTTCT---------TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhCc---------CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 762 222222212111 1122333332 1 1 11111123345689999999999999998
Q ss_pred HhCCCCCCCcchHHHHHHHHHhC-CChhHHHHH
Q 038494 336 IVGNSAKASAFQPLADEIVGKCG-GLPVALSTV 367 (1209)
Q Consensus 336 ~~~~~~~~~~~~~~~~~i~~~~~-glPLai~~~ 367 (1209)
.+.... ..-..+....|++.+. |.|-.+..+
T Consensus 271 ~~~~~~-~~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 271 RCEEED-VEMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHHHTT-CCBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcC-CCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 775222 1223566778888887 777655444
No 179
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.01 E-value=5.6e-05 Score=83.96 Aligned_cols=188 Identities=15% Similarity=0.152 Sum_probs=109.1
Q ss_pred ccccccchhhHHHHHHHHHHHHh------------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALR------------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
|.....+++|.+..++.|.+++. ....+.|.|+|++|+|||++|+.+++..... .+.++.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~-- 85 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS-- 85 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH--
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH--
Confidence 34446788999999999988773 1123578999999999999999999876432 2333331
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc-------------cccCCCCCCCCcc
Q 038494 222 PDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL-------------EEIGIPFGDVDEK 288 (1209)
Q Consensus 222 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-------------~~l~~~~~~~~~~ 288 (1209)
++.. .. ..........+.......++.+|++|+++....- ..+...+...
T Consensus 86 ----~l~~----~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~--- 148 (322)
T 3eie_A 86 ----DLVS----KW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV--- 148 (322)
T ss_dssp ----HHHT----TT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG---
T ss_pred ----HHhh----cc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc---
Confidence 1111 00 0111344455555555567789999999865210 0110000000
Q ss_pred ccccccCCcEEEEeccchhhhcccC--CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hhHHH
Q 038494 289 DRKQDLRRRTIILTSRSKHLLTNDM--NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PVALS 365 (1209)
Q Consensus 289 ~~~~~~~~s~ilvTtR~~~v~~~~~--~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~ 365 (1209)
.....+..||.||.......... .-...+.++..+.++-.+++..++...... ........|++.+.|. +-.|.
T Consensus 149 --~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 149 --GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp --GTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHH
T ss_pred --cccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHH
Confidence 00113455555666543221111 223578899999999999999988643221 1234567888888874 54555
Q ss_pred HHH
Q 038494 366 TVA 368 (1209)
Q Consensus 366 ~~~ 368 (1209)
.+.
T Consensus 226 ~l~ 228 (322)
T 3eie_A 226 VVV 228 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.00 E-value=5.2e-05 Score=84.60 Aligned_cols=166 Identities=10% Similarity=0.139 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHhCCCc-eEEEEEcCCCChHHHHHHHHHHHHhhcc--------------------cCCEEEEEEcC---C
Q 038494 165 MKLFQDVVEALRNDKL-NIIGVHGMGGVGKTTLVKQIAKQVMEDK--------------------VFDKVVMAEVT---E 220 (1209)
Q Consensus 165 ~~~~~~l~~~L~~~~~-~vi~I~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~~~~wv~~s---~ 220 (1209)
++..+.+...+..++. ..+.++|+.|+|||++|+.+++...... |++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 4556777777776554 5689999999999999999998875321 122 2233221 1
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh----cCCeEEEEEeCCCccc--CccccCCCCCCCCcccccccc
Q 038494 221 NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT----KEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDL 294 (1209)
Q Consensus 221 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~ 294 (1209)
... .+.++.+.+.+. .+++-++|+|+++... ..+.+...+-...
T Consensus 87 ~~~----------------------i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-------- 136 (334)
T 1a5t_A 87 TLG----------------------VDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-------- 136 (334)
T ss_dssp SBC----------------------HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC--------
T ss_pred CCC----------------------HHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC--------
Confidence 111 233344444432 2467899999998763 2233322221111
Q ss_pred CCcEEEEeccchh-hhcccCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 295 RRRTIILTSRSKH-LLTNDMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 295 ~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
.+..+|++|.... +..........+.+.+++.++..+.+.+.. .-..+.+..+++.++|.|..+..+
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred CCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4566666666543 333223455789999999999999998875 112456678999999999766544
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.9e-05 Score=87.18 Aligned_cols=185 Identities=12% Similarity=0.155 Sum_probs=105.8
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
+.....++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++.......-..+..++.+.......+.. ++..
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~-~i~~ 99 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-QIKD 99 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-HHHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHH-HHHH
Confidence 334567889888999999988877665589999999999999999998865321101223333333222222211 1111
Q ss_pred hCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh-hhcc
Q 038494 235 LDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH-LLTN 311 (1209)
Q Consensus 235 l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~ 311 (1209)
+...... + .+.+-++|+|+++... ..+.+...+.... ...++|++|.... +...
T Consensus 100 ~~~~~~~--------------~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~--------~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 100 FASTRQI--------------F-SKGFKLIILDEADAMTNAAQNALRRVIERYT--------KNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp HHHBCCS--------------S-SCSCEEEEETTGGGSCHHHHHHHHHHHHHTT--------TTEEEEEEESCGGGSCHH
T ss_pred HHhhccc--------------C-CCCceEEEEeCCCCCCHHHHHHHHHHHhcCC--------CCeEEEEEecCccccchh
Confidence 1000000 0 1236789999997642 2222211111111 3556666665432 2211
Q ss_pred cCCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHH
Q 038494 312 DMNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVAL 364 (1209)
Q Consensus 312 ~~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 364 (1209)
.......+.+.+++.++..+.+...+..... .-..+..+.|++.++|.+--+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKL-KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 1234468899999999999988877632111 112456778888888877643
No 182
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=3.2e-06 Score=82.74 Aligned_cols=45 Identities=9% Similarity=0.290 Sum_probs=20.7
Q ss_pred ccCCCccEEEEecCCCCccccchhhHh---hhccCcEEEEccCCchhh
Q 038494 1064 SFFNNLARLVVDDCTNMSSAIPANLLR---CLNNLRRLEVRNCDSLEE 1108 (1209)
Q Consensus 1064 ~~l~~L~~L~i~~c~~l~~~~~~~~~~---~l~~L~~L~i~~c~~l~~ 1108 (1209)
..+++|++|++++|..+++.....+.+ .+++|++|++++|+++++
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 345555555555555555432222211 123455555555554443
No 183
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.96 E-value=8.2e-05 Score=83.56 Aligned_cols=183 Identities=16% Similarity=0.165 Sum_probs=105.1
Q ss_pred cccchhhHHHHHHHHHHHHhC-----CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
....|+|++..++.+..++.. .....|.|+|++|+|||++|+.+++..... .+.++.+......
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSG------ 95 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHH------
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchh------
Confidence 466899999999999888862 334578999999999999999998775421 2333333221111
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCC---------c-cccccccCCcEE
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVD---------E-KDRKQDLRRRTI 299 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~---------~-~~~~~~~~~s~i 299 (1209)
......... .+..+|++|+++... ....+...+.... . .......++..+
T Consensus 96 ----------------~~~~~~~~~--~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 96 ----------------DLAAILTNL--SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp ----------------HHHHHHHTC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred ----------------HHHHHHHhc--cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 111111111 355788899988652 1111110000000 0 000000023456
Q ss_pred EEeccchhhhc-ccC-CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 300 ILTSRSKHLLT-NDM-NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 300 lvTtR~~~v~~-~~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
|.+|....... ... .....+.+.+++.++...++.+.+.... ..-..+..+.|++.+.|.|-.+..+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 66665533211 011 2236899999999999999988765221 122356777899999999966554443
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.93 E-value=0.00013 Score=83.40 Aligned_cols=187 Identities=15% Similarity=0.141 Sum_probs=105.4
Q ss_pred ccccchhhHHHHHHHHHHHHhC------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 156 KDFEAFDSRMKLFQDVVEALRN------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
.....++|++..++.+.+++.. ...+.|.|+|.+|+|||++|+.+++.... ..+.++++.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 3467899999999999988731 22467899999999999999999877532 233444433211
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc-------------cccCCCCCCCCcccc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL-------------EEIGIPFGDVDEKDR 290 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 290 (1209)
. . .+ . .......+........+.+|++|+++....- ..+...+....
T Consensus 187 ~--~-------~g------~-~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---- 246 (389)
T 3vfd_A 187 K--Y-------VG------E-GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---- 246 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--c-------cc------h-HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc----
Confidence 0 0 00 0 1233444444444456689999999765110 00000000000
Q ss_pred ccccCCcEEEEeccchhhhcc-cC-CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh-HHHHH
Q 038494 291 KQDLRRRTIILTSRSKHLLTN-DM-NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV-ALSTV 367 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~v~~~-~~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 367 (1209)
........||.||........ .. .....+.+...+.++..+++...+..... .-..+....|++.+.|..- +|..+
T Consensus 247 ~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 247 SAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 000123445556654322211 11 22357889999999999999888753222 1224567789999988544 55554
Q ss_pred H
Q 038494 368 A 368 (1209)
Q Consensus 368 ~ 368 (1209)
.
T Consensus 326 ~ 326 (389)
T 3vfd_A 326 A 326 (389)
T ss_dssp H
T ss_pred H
Confidence 3
No 185
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.92 E-value=0.0003 Score=77.26 Aligned_cols=190 Identities=10% Similarity=0.086 Sum_probs=105.5
Q ss_pred cccchhhHHHHHHHHHHHHhC------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 157 DFEAFDSRMKLFQDVVEALRN------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
....++|.+..++.+.+++.. ...+.+.|+|++|+|||++|+.+++.... ..+.++.+.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh-
Confidence 356789999999998887642 23468899999999999999999987642 223444433211
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCC-CCCCCCccccc---cc------c
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGI-PFGDVDEKDRK---QD------L 294 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~-~~~~~~~~~~~---~~------~ 294 (1209)
............+.......++.+|++|+++....-..-.. ..........+ .+ .
T Consensus 93 ---------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 ---------------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp ---------------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred ---------------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00111133344444444445778999999976521100000 00000000000 00 0
Q ss_pred CCcEEEEeccchhhhccc-C-CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh-HHHHHH
Q 038494 295 RRRTIILTSRSKHLLTND-M-NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV-ALSTVA 368 (1209)
Q Consensus 295 ~~s~ilvTtR~~~v~~~~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 368 (1209)
.+..||.||......... . .....+.+...+.++...++...+..... .-..+....|++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 234566666654321110 0 12256778888888888888877643211 1124567789999988875 554443
No 186
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.00023 Score=79.27 Aligned_cols=181 Identities=11% Similarity=0.097 Sum_probs=105.2
Q ss_pred cccccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 155 AKDFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
...+.++.|-++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++..... .+.+..+.-
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l 218 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAEL 218 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHh
Confidence 3346677788877777776654 1 224568899999999999999999987643 244444332
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccc-------cc---
Q 038494 222 PDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKD-------RK--- 291 (1209)
Q Consensus 222 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~-------~~--- 291 (1209)
.+ ....+.+..++.+........+++|++|+++....-.. .-..++... .+
T Consensus 219 ~s----------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~---~~~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 219 VQ----------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRV---EGSGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp SC----------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCS---CSSSGGGGHHHHHHHHHHHHH
T ss_pred hc----------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCC---CCCCCCcHHHHHHHHHHHHhh
Confidence 10 00111244555566555556889999999986521000 000000000 00
Q ss_pred ---cccCCcEEEEeccchhhhccc----CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 292 ---QDLRRRTIILTSRSKHLLTND----MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 292 ---~~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
....+-.||.||...+....+ ..-...+.++.-+.++-.++|+.+.......++. ...+|++.+.|.-
T Consensus 280 Dg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 280 DGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp HTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred hccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 011344566677665433211 1345689999999999999998887633222211 1347778887754
No 187
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.89 E-value=4.8e-05 Score=88.95 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=87.9
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC----C-EEEEEEcCCCcCHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF----D-KVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~-~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
...++||+.+++.+.+.+......-+.|+|.+|+|||++|+.+++........ + .++.++++ .
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------~ 246 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------T 246 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------c
Confidence 45689999999999999986666677899999999999999999987432111 1 12333332 0
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchh-----
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH----- 307 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~----- 307 (1209)
...+ .. ......+...+...++.+|++| ...+....+...+.. ...++|.+|....
T Consensus 247 ~~~g----~~---e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~----------g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 KYRG----EF---EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR----------GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS----------SSCEEEEECCTTTTHHHH
T ss_pred cccc----hH---HHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC----------CCEEEEecCCHHHHHHHh
Confidence 0000 00 1233445555555567899999 222222223333221 2455666655443
Q ss_pred -hhcccCCcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 308 -LLTNDMNSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 308 -v~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
...........+.+++.+.++..+++.....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 1111112345799999999999999987654
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.89 E-value=2e-05 Score=91.29 Aligned_cols=186 Identities=14% Similarity=0.187 Sum_probs=106.3
Q ss_pred ccchh-hH--HHHHHHHHHHHhCCC-ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 158 FEAFD-SR--MKLFQDVVEALRNDK-LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 158 ~~~~~-gR--~~~~~~l~~~L~~~~-~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
...|+ |. ......+..+..... ...+.|+|++|+||||||+.+++.......-..+++++... +...+..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 45666 42 333444555544433 56889999999999999999998875431112455665432 3334444
Q ss_pred HhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC----ccccCCCCCCCCccccccccCCcEEEEeccchhhh
Q 038494 234 DLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG----LEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL 309 (1209)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 309 (1209)
.+... ....+...+. .++-+|++||++.... .+.+...+... ...|..||+||......
T Consensus 178 ~~~~~---------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-------~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 178 SMKEG---------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNEL-------HDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHTT---------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHH-------HTTTCEEEEEESSCGGG
T ss_pred HHHcc---------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHH-------HHCCCeEEEEECCCHHH
Confidence 33211 0112333332 2567999999976532 11121111000 01567888888763211
Q ss_pred -----ccc---CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 310 -----TND---MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 310 -----~~~---~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
... +.....+.+++++.++..+++.+.+..... .-..+....|++.++|.+-.+.-+
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 000 112257889999999999999887641110 111345778999999988765544
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.88 E-value=1.5e-05 Score=80.83 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=43.3
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...++||+.+++.+.+++.....+.+.|+|++|+|||++|+.+++....
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 5578999999999999998766778899999999999999999988743
No 190
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.88 E-value=0.00011 Score=82.51 Aligned_cols=185 Identities=16% Similarity=0.159 Sum_probs=105.8
Q ss_pred cccchhhHHHHHHHHHHHHhC------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 157 DFEAFDSRMKLFQDVVEALRN------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
....++|.+..++.|.+++.. ...+-|.|+|++|+|||++|+.+++..... .+.+..+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 356788988888888887631 123458899999999999999999987432 2333322
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc-------------cccCCCCCCCCccccc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL-------------EEIGIPFGDVDEKDRK 291 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-------------~~l~~~~~~~~~~~~~ 291 (1209)
++.. .. . .........+.......++.+|++|+++....- ..+...+....
T Consensus 119 -~l~~----~~---~---g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----- 182 (355)
T 2qp9_X 119 -DLVS----KW---M---GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----- 182 (355)
T ss_dssp -HHHS----CC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----
T ss_pred -HHhh----hh---c---chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc-----
Confidence 1111 00 0 011344455555554457899999999865210 11100000000
Q ss_pred cccCCcEEEEeccchhhhccc--CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hhHHHHHH
Q 038494 292 QDLRRRTIILTSRSKHLLTND--MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PVALSTVA 368 (1209)
Q Consensus 292 ~~~~~s~ilvTtR~~~v~~~~--~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~ 368 (1209)
....+..||.||......... ......+.++..+.++-.+++..++...... -.......|++.+.|. +-.|..+.
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 001344555566544321100 1233678899999999999999887633211 1244567899999884 54555554
No 191
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.87 E-value=0.00017 Score=79.23 Aligned_cols=179 Identities=11% Similarity=0.144 Sum_probs=102.1
Q ss_pred ccccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 156 KDFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
....+++|.+..++.+.+++.. ...+.|.|+|++|+|||++|+.+++.... ..+.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~----- 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK----- 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE-----
Confidence 3456788888888888777642 33467899999999999999999987642 122222
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC---c-------------cccCCCCCCCC
Q 038494 223 DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG---L-------------EEIGIPFGDVD 286 (1209)
Q Consensus 223 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~-------------~~l~~~~~~~~ 286 (1209)
..++.... ++.. ......+........+.+|++|+++.... . ..+...+..
T Consensus 82 -~~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~-- 148 (301)
T 3cf0_A 82 -GPELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG-- 148 (301)
T ss_dssp -HHHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS--
T ss_pred -hHHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc--
Confidence 22332222 2211 12334444444445779999999985410 0 001000000
Q ss_pred ccccccccCCcEEEEeccchhhhccc-C---CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh
Q 038494 287 EKDRKQDLRRRTIILTSRSKHLLTND-M---NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 287 ~~~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
.....+..||.||......... . .-...+.++..+.++-.+++...........+. ....+++.+.|.|-
T Consensus 149 ----~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg 222 (301)
T 3cf0_A 149 ----MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSG 222 (301)
T ss_dssp ----SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCH
T ss_pred ----ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCH
Confidence 0011355677777655322111 1 233678999999999999998887532211111 12356667777765
Q ss_pred H
Q 038494 363 A 363 (1209)
Q Consensus 363 a 363 (1209)
+
T Consensus 223 ~ 223 (301)
T 3cf0_A 223 A 223 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 192
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.87 E-value=4.7e-05 Score=84.35 Aligned_cols=154 Identities=14% Similarity=0.119 Sum_probs=84.9
Q ss_pred chhhHHHHHHHHHHHHh---------------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 160 AFDSRMKLFQDVVEALR---------------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
.++|.+..++.+.+++. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47788777777776543 233457899999999999999999988754332221122333211
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc-----------CccccCCCCCCCCccccccc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL-----------GLEEIGIPFGDVDEKDRKQD 293 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~-----------~~~~l~~~~~~~~~~~~~~~ 293 (1209)
.+... ...........+.... +.-+|++|+++... ....+...+...
T Consensus 109 ---------~l~~~--~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~-------- 166 (309)
T 3syl_A 109 ---------DLVGQ--YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN-------- 166 (309)
T ss_dssp ---------GTCCS--STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC--------
T ss_pred ---------Hhhhh--cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC--------
Confidence 00000 0011122223333322 33599999998541 111111111111
Q ss_pred cCCcEEEEeccchhhh------cccC-CcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 294 LRRRTIILTSRSKHLL------TNDM-NSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 294 ~~~s~ilvTtR~~~v~------~~~~-~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
..+..+|.||...... .... .....+.+++++.++-.+++...+.
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 167 RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 1456777777543210 0001 1236899999999999999988764
No 193
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.85 E-value=0.00033 Score=80.41 Aligned_cols=110 Identities=10% Similarity=0.156 Sum_probs=62.2
Q ss_pred cccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCCCCccc-h
Q 038494 554 SYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSDIKQLP-L 629 (1209)
Q Consensus 554 ~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~~~~lp-~ 629 (1209)
.+..+....|.++.+|+.+.+.. .++.+++ +|.++.+|+.+++..+ ++.+ ..+.++.+|+.+.+..+ +..+. .
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 45667777788888888888864 3666654 5777788888877644 5555 45666666766555432 33332 2
Q ss_pred hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 630 EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 630 ~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
.+.++..+..... .....+....+.++.+|+.+.+..
T Consensus 135 aF~~~~~~~~~~~---~~~~~i~~~aF~~c~~L~~i~l~~ 171 (394)
T 4fs7_A 135 AFKGCDFKEITIP---EGVTVIGDEAFATCESLEYVSLPD 171 (394)
T ss_dssp TTTTCCCSEEECC---TTCCEECTTTTTTCTTCCEEECCT
T ss_pred eeecccccccccC---ccccccchhhhcccCCCcEEecCC
Confidence 2333332222222 122333344466666666666643
No 194
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00053 Score=76.55 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=103.8
Q ss_pred ccccccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 154 QAKDFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 154 ~~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
|...+.++.|-++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++..... | +.+..++
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--f---i~v~~s~ 251 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--F---LRIVGSE 251 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--E---EEEESGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--E---EEEEHHH
Confidence 33446677788877777776654 1 234678999999999999999999988643 2 3343332
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccc-----cc----
Q 038494 221 NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKD-----RK---- 291 (1209)
Q Consensus 221 ~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~-----~~---- 291 (1209)
-.+ ....+.+..++.+........+++|++|+++....-..-...-. ..... .+
T Consensus 252 l~s----------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~-~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 252 LIQ----------------KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGG-EREIQRTMLELLNQLD 314 (437)
T ss_dssp GCC----------------SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSS-CCHHHHHHHHHHHHHH
T ss_pred hhh----------------ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCc-cHHHHHHHHHHHHHhh
Confidence 110 01111244555566555556789999999986521110000000 00000 00
Q ss_pred --cccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC
Q 038494 292 --QDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL 360 (1209)
Q Consensus 292 --~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 360 (1209)
....+..||.||-..+....+. .-...+.++.-+.++-.++|..+.......++. ....|++.+.|.
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDL 387 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 0113445666776655443222 233568888888888899998887633222211 134677777765
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.81 E-value=0.00023 Score=82.52 Aligned_cols=187 Identities=17% Similarity=0.172 Sum_probs=105.4
Q ss_pred ccccchhhHHHHHHHHHHHHh------------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 156 KDFEAFDSRMKLFQDVVEALR------------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
.....++|.+..++.|.+++. ....+.|.|+|++|+|||++|+.+++.... . .++.++...
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-~-----~~~~v~~~~- 203 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S-----TFFSISSSD- 203 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-S-----EEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-C-----CEEEEeHHH-
Confidence 346678899988888888763 123467899999999999999999987621 1 123333221
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC-------------ccccCCCCCCCCcccc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG-------------LEEIGIPFGDVDEKDR 290 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 290 (1209)
+... ..+. . ...+..+.......++.+|++|+++.... ...+...+....
T Consensus 204 ---l~~~---~~g~----~---~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---- 266 (444)
T 2zan_A 204 ---LVSK---WLGE----S---EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG---- 266 (444)
T ss_dssp ------------------C---CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS----
T ss_pred ---HHhh---hcch----H---HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc----
Confidence 1110 0110 0 11233344444445779999999986511 011111111000
Q ss_pred ccccCCcEEEEeccchhhhccc-C-CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hhHHHHH
Q 038494 291 KQDLRRRTIILTSRSKHLLTND-M-NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PVALSTV 367 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~v~~~~-~-~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~ 367 (1209)
....+..||.||......... . .....+.++..+.++...+|..++...... -.......|++.+.|. +-.|..+
T Consensus 267 -~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 267 -VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp -CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred -cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 001455666677554322111 1 223578888889999999998887533211 1235567899999884 5455555
Q ss_pred H
Q 038494 368 A 368 (1209)
Q Consensus 368 ~ 368 (1209)
.
T Consensus 345 ~ 345 (444)
T 2zan_A 345 V 345 (444)
T ss_dssp H
T ss_pred H
Confidence 4
No 196
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.80 E-value=0.0003 Score=80.43 Aligned_cols=142 Identities=14% Similarity=0.197 Sum_probs=69.6
Q ss_pred CeEEEEccCCCCccCCCcC-CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEec
Q 038494 520 GAIAISIPYGDIQELPERL-ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCL 597 (1209)
Q Consensus 520 ~~r~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l 597 (1209)
+++.+.+..+.+..++... .+.+|+.+.+.. ....+....|.++.+|+.+++..+ ++.++. +|.+ .+|+.+.+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~---~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPV---TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTTTCCCSEEECCT---TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred cCCeeecCCCcceEechhhEeecccCEEEeCC---chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 3444444444444444321 344555555432 234445555555555555555542 343333 3333 45555555
Q ss_pred cCcccCCc--ccccCCCCCCEEEccCCCCC-----ccc-hhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 598 DWCQLEDV--AAIGQLKKLEILSFRYSDIK-----QLP-LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 598 ~~~~l~~l--~~i~~L~~L~~L~l~~~~~~-----~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
. +.++.+ ..|.++.+|+.+++.++.+. .++ ..+.++.+|+.+.+.. +++.++...+.++.+|+.+.+..
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc
Confidence 2 234444 45556666666666554332 232 2355566666666553 35555555555666666665543
No 197
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00019 Score=81.40 Aligned_cols=177 Identities=11% Similarity=0.094 Sum_probs=102.6
Q ss_pred cccccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 155 AKDFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
...+.++.|-++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++..... .+.+..+.-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 3446778888888888877643 1 234678999999999999999999987642 344444321
Q ss_pred cCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCcc----------------ccCCCCCCC
Q 038494 222 PDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLE----------------EIGIPFGDV 285 (1209)
Q Consensus 222 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~----------------~l~~~~~~~ 285 (1209)
.+ .........++.+........+++|++|+++....-. .+...+...
T Consensus 252 ~~----------------~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~ 315 (434)
T 4b4t_M 252 VQ----------------MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF 315 (434)
T ss_dssp CS----------------SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS
T ss_pred hh----------------cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc
Confidence 10 0011113444455554444578999999997541100 000000000
Q ss_pred CccccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC
Q 038494 286 DEKDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL 360 (1209)
Q Consensus 286 ~~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 360 (1209)
....+-.||.||...+....++ .-...+.++.-+.++-.++|+.+.......++. -..+|++.+.|.
T Consensus 316 ------~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~ 386 (434)
T 4b4t_M 316 ------SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEF 386 (434)
T ss_dssp ------CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSC
T ss_pred ------CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 0113445666776665443222 234678899889888889988776422211111 134677888775
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00053 Score=77.74 Aligned_cols=182 Identities=15% Similarity=0.189 Sum_probs=104.3
Q ss_pred ccccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 156 KDFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
..+.++.|-++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++..... .+.+..+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhc
Confidence 346677788887777777654 1 234678999999999999999999987643 3444444321
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcc-----ccc------
Q 038494 223 DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEK-----DRK------ 291 (1209)
Q Consensus 223 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~-----~~~------ 291 (1209)
+ .........++.+........+++|++|+++....-..-.... ..... ..+
T Consensus 253 s----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 253 D----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS-ADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp C----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCS-STTHHHHHHHHHHHHHHSS
T ss_pred c----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCC-cchHHHHHHHHHHHHhhcc
Confidence 1 0011113444555555555688999999998642100000000 00000 000
Q ss_pred cccCCcEEEEeccchhhhcccC-C---cceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 292 QDLRRRTIILTSRSKHLLTNDM-N---SQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 292 ~~~~~s~ilvTtR~~~v~~~~~-~---~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
....+..||.||...+....+. . -...+.++.-+.++-.++|+.+........+. ....|++.+.|.-
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCC
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCC
Confidence 0113456777776655443222 1 34578888888888889998777532222211 1346777777753
No 199
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.78 E-value=1.1e-05 Score=78.86 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=69.2
Q ss_pred cCCcEEEEecccCceeeeccCCccccccCCcccEEecccccccchhcccccccc-cccCCccEEEEecCCCccccccHHH
Q 038494 789 PRLKHLWVERCSEILHIVGSVGRVHRKVFPLLESLSLYKLINLEAICHSQLRED-QFFSNLKIIEVESCDKLKHLFSFSI 867 (1209)
Q Consensus 789 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~ 867 (1209)
.+|++|++++|. +.. .+......+++|+.|+|++|..+++.....+... ...++|+.|+|++|+++++... ..
T Consensus 61 ~~L~~LDLs~~~-Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IA 134 (176)
T ss_dssp CCEEEEEEESCC-CCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HH
T ss_pred ceEeEEeCcCCC-ccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HH
Confidence 468999999987 321 2233445789999999999998888765544331 0246899999999999887543 34
Q ss_pred HhhcccccEEEEecccccccc
Q 038494 868 ARNLLRLQKVKVASCNKLEMT 888 (1209)
Q Consensus 868 ~~~l~~L~~L~l~~c~~l~~~ 888 (1209)
+.++++|++|++++|+.+++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCH
T ss_pred HhcCCCCCEEECCCCCCCCch
Confidence 567899999999999888764
No 200
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.77 E-value=9.2e-05 Score=82.49 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=94.5
Q ss_pred HHHHHHHHHhCC--CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCC
Q 038494 167 LFQDVVEALRND--KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDS 244 (1209)
Q Consensus 167 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~ 244 (1209)
....+..++..+ ....+.|+|++|+||||+|+.+++..... -..++++++. ++...+...+...
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC------
Confidence 344455555543 34678999999999999999999887543 1234555543 2333333332110
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeCCCcccC---c-cccCCCCCCCCccccccccCCcEEEEeccchhhh-----ccc---
Q 038494 245 KPHRAKQLCQRLTKEKRVLIILDNIWKKLG---L-EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLL-----TND--- 312 (1209)
Q Consensus 245 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-----~~~--- 312 (1209)
........+. +..+|++||++.... + +.+...+.. ....+..+|+||...... ...
T Consensus 88 ---~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~-------~~~~~~~iii~~~~~~~~l~~l~~~L~sR 155 (324)
T 1l8q_A 88 ---TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNT-------LYLLEKQIILASDRHPQKLDGVSDRLVSR 155 (324)
T ss_dssp ---CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHH-------HHHTTCEEEEEESSCGGGCTTSCHHHHHH
T ss_pred ---cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHH-------HHHCCCeEEEEecCChHHHHHhhhHhhhc
Confidence 1112233333 357999999987532 1 112111100 001466788887643211 000
Q ss_pred CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhH
Q 038494 313 MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVA 363 (1209)
Q Consensus 313 ~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 363 (1209)
......+.+++ +.++..+++...+..... .-..+....|++.+ |..-.
T Consensus 156 ~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 156 FEGGILVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHTSEEEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHH
T ss_pred ccCceEEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHH
Confidence 11225789999 999999999888752111 12246677888888 76543
No 201
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.77 E-value=8.1e-05 Score=94.27 Aligned_cols=160 Identities=14% Similarity=0.180 Sum_probs=90.3
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhccc-----CCEEEEEEcCCCcCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV-----FDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~-----f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
....++||++++..+++.+.......+.++|.+|+|||++|+.+++....... -..+++++++.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 35678999999999999998766667889999999999999999998743211 12344554422110
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhc-CCeEEEEEeCCCcccC-------ccccCCCCCCCCccccccccCCcEEEEec
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTK-EKRVLIILDNIWKKLG-------LEEIGIPFGDVDEKDRKQDLRRRTIILTS 303 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~-------~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 303 (1209)
+ .............+...+.. +++.+|++|+++.... ++.. ..+.. .....+..+|.+|
T Consensus 240 ----g--~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~-~~L~~------~l~~~~i~~I~at 306 (854)
T 1qvr_A 240 ----G--AKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAG-NMLKP------ALARGELRLIGAT 306 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HH------HHHTTCCCEEEEE
T ss_pred ----c--CccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHH-HHHHH------HHhCCCeEEEEec
Confidence 0 00001123445555565553 3679999999986521 1110 00000 0011234456555
Q ss_pred cchhh-----hcccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 304 RSKHL-----LTNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 304 R~~~v-----~~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
..... ..........+.+++++.++..+++....
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 43321 11112334568999999999999997544
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00064 Score=76.71 Aligned_cols=178 Identities=12% Similarity=0.108 Sum_probs=102.6
Q ss_pred ccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 158 FEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
+.++.|-++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++..... .+.+..+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 4567788888877776543 1 235678899999999999999999987643 24444432110
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccc-------cc------
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKD-------RK------ 291 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~-------~~------ 291 (1209)
......+..++.+........+++|++|+++....-..- -..+.... .+
T Consensus 282 ---------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~---~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 282 ---------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFD---DGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp ---------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSS---SSCGGGGHHHHHHHHHHHHHHSS
T ss_pred ---------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccC---cCCCccHHHHHHHHHHHHHhhcc
Confidence 001111344555555555568899999999865210000 00000000 00
Q ss_pred cccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 292 QDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 292 ~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
....+..||.||........++ .-...+.++..+.++-.++|+.+........+. ....|++.+.|.-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 0113344566775554332111 345688899889999999998887633222211 1346778887753
No 203
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=0.00058 Score=77.35 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=98.7
Q ss_pred ccccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 156 KDFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
..+.++.|-++.+++|.+.+. . ...+-|.++|++|+|||.+|+++++..... .+.+..++-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhh
Confidence 346677888888888777654 1 234568999999999999999999987642 3445544321
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcccc-----c------
Q 038494 223 DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDR-----K------ 291 (1209)
Q Consensus 223 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~-----~------ 291 (1209)
+ .........++.+........+++|++|+++....-..-.. ........+ +
T Consensus 244 ~----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~-~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 244 H----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQ-TGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp C----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSC-SCCCCHHHHHHHHHHHHHHHS
T ss_pred c----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCC-CCCChHHHHHHHHHHHHhhCC
Confidence 1 00111234455555555556789999999975421100000 000000000 0
Q ss_pred cccCCcEEEEeccchhhhcccC----CcceEEEcCCCC-HHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC
Q 038494 292 QDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLS-KEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL 360 (1209)
Q Consensus 292 ~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~-~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 360 (1209)
....+-.||.||...+....+. .-...+.++.++ .++-..+|..+.......++. ....|++.+.|.
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~ 378 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSL 378 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTC
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCC
Confidence 1123445666776554322111 233567887664 555566776665432211111 134677777775
No 204
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.62 E-value=4.9e-05 Score=85.23 Aligned_cols=136 Identities=16% Similarity=0.194 Sum_probs=66.8
Q ss_pred hhhcCCCCCcEEEecCcccccccccccCCCCCcEEeccCcccCCc--cccc--CCCCCCEEEccCC--C------CCccc
Q 038494 561 LFFEGTEDLKVLSLSGIHFSSLSSSLGHLINLQTLCLDWCQLEDV--AAIG--QLKKLEILSFRYS--D------IKQLP 628 (1209)
Q Consensus 561 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L~~L~l~~~~l~~l--~~i~--~L~~L~~L~l~~~--~------~~~lp 628 (1209)
.++..+++|+.|+++++.-..++. + .+.+|+.|++..|.+..- ..++ ++++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 344566677777776653223333 3 266777777776665332 3332 5677777776421 0 11121
Q ss_pred hhc--cCCCCCCEEeccCCCCCcccCchhh--cCCCCCcEEECCCCCCccccccCCC-ccchhhhCCCCCCCEEEeeccC
Q 038494 629 LEI--GQLAQLQLLDLSNCSSLVVIAPNVI--SKFSRLEELYMGDSFPQWDKVEGGS-NASLAELKGLSKLTTLEIQVQD 703 (1209)
Q Consensus 629 ~~i--~~L~~L~~L~l~~~~~l~~~~~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~-~~~l~~L~~l~~L~~L~l~~~~ 703 (1209)
..+ ..+++|++|++.+|......+.... ..+++|++|+++.|.. .... ......+..+++|+.|+++.+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L-----~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL-----TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC-----BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC-----ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 112 2466777777766432211111101 2456777777765432 1000 1112233455677777776553
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.59 E-value=0.0024 Score=68.22 Aligned_cols=186 Identities=15% Similarity=0.126 Sum_probs=98.3
Q ss_pred cccchhhHHHHHHHHHHHHh---C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 157 DFEAFDSRMKLFQDVVEALR---N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
...+++|.+..++.+.+.+. . ...+-+.|+|++|+||||+|+.+++.... .| +.++.+.-..
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~---~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--CE---EEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--CE---EEEeHHHHHH-
Confidence 35678887777766655432 2 11345889999999999999999987642 12 3333322110
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccc------cc------c
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKD------RK------Q 292 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~------~~------~ 292 (1209)
............+.+......+.++++|+++....-.. ..+..+.... .+ .
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~--~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG--AGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS--TTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC--CCcCCCchHHHHHHHHHHHHhhCcc
Confidence 00011133444555555445678999999865421000 0000000000 00 0
Q ss_pred ccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCC-ChhHHHHH
Q 038494 293 DLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGG-LPVALSTV 367 (1209)
Q Consensus 293 ~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~ 367 (1209)
...+..||.||.......... .-...+.++..+.++-.+++........-.++ .....+++.+.| .+--|..+
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHHHH
Confidence 113455666776543221111 12357888888888888888877653221111 113456777777 66555443
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.53 E-value=0.0003 Score=88.07 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=88.1
Q ss_pred ccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccC----C-EEEEEEcCCCcCHHHHHHHHH
Q 038494 158 FEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF----D-KVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~-~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
...++||+++++.+.+.+......-+.++|.+|+|||++|+.+++........ + .++.++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------
Confidence 45789999999999999987666678899999999999999999987332110 1 1222222
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCccccccccCCcEEEEeccchhh----
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHL---- 308 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v---- 308 (1209)
+...... .......+.......++.+|++| ...+....+...+.. ...++|.||.....
T Consensus 245 ---g~~~~G~--~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~~----------~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 245 ---GTKYRGE--FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLAR----------GELQCIGATTLDEYRKYI 307 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTTS----------SSCEEEEECCTTTTHHHH
T ss_pred ---cccccch--HHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHhc----------CCEEEEeCCChHHHHHHh
Confidence 0000000 02233445555555677899999 222222223322221 34566666654431
Q ss_pred --hcccCCcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 309 --LTNDMNSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 309 --~~~~~~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
-.........+.++..+.++..+++.....
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 111112336799999999999999987654
No 207
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.52 E-value=0.00074 Score=84.71 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=95.9
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhccc----CCEEEE-EEcCCCcCHHHHHHHH
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV----FDKVVM-AEVTENPDVQKIQDKL 231 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~w-v~~s~~~~~~~l~~~i 231 (1209)
....++||+.+++.+++.+......-+.|+|.+|+|||++|+.+++....... .+..+| ++++.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 35578999999999999998766677899999999999999999987743211 222222 222111
Q ss_pred HHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--------C---ccccCCCCCCCCccccccccCCcEEE
Q 038494 232 ASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--------G---LEEIGIPFGDVDEKDRKQDLRRRTII 300 (1209)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--------~---~~~l~~~~~~~~~~~~~~~~~~s~il 300 (1209)
+... ............+.+.+...++.+|++||++... . ...+...+.. .+.++|
T Consensus 254 ---~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~----------~~~~~I 319 (758)
T 1r6b_X 254 ---LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS----------GKIRVI 319 (758)
T ss_dssp ----CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS----------CCCEEE
T ss_pred ---hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC----------CCeEEE
Confidence 0000 1111224455666666665567999999998651 0 1112222211 345666
Q ss_pred Eeccchhhh------cccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 301 LTSRSKHLL------TNDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 301 vTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
.+|...... .........+.++..+.++..+++....
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 666543311 0011233578999999999999887654
No 208
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.46 E-value=0.0047 Score=70.68 Aligned_cols=122 Identities=14% Similarity=0.258 Sum_probs=72.6
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCC
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLE 615 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~ 615 (1209)
+|.+|+++.+.. .+..+.+..|.++.+|+.+++..+ ++.++. .+..+.+|+.+.+..+ +..+ ..+.++..+.
T Consensus 69 ~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 69 GCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp TCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred CCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 577888888753 356677778888888888888754 555544 5777777777666543 3333 3444443332
Q ss_pred EEEccCCCCCcc-chhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 616 ILSFRYSDIKQL-PLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 616 ~L~l~~~~~~~l-p~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
..... .+..+ ...+.++.+|+.+.+.. .+..++...+..+.+|+.+.+..
T Consensus 144 ~~~~~--~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 144 ITIPE--GVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp EECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred cccCc--cccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCC
Confidence 22221 22222 22356667777777654 34445555566677777766644
No 209
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00027 Score=77.01 Aligned_cols=146 Identities=13% Similarity=0.120 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhh-c-ccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCC
Q 038494 163 SRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVME-D-KVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNF 239 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~-~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~ 239 (1209)
|-++.++.+.+.+..+..+...++|+.|+||||+|+.+++.... . .+.+ +.++..+. ...+.++ +.+.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 34455677777777666778999999999999999999985321 1 2333 34555432 2333332 22333332110
Q ss_pred CCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccch-hhhcccCCcc
Q 038494 240 DLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSK-HLLTNDMNSQ 316 (1209)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~ 316 (1209)
. .+++-++|+|+++... ..+.+...+-... +.+.+|++|.+. .+.......
T Consensus 79 ~-----------------~~~~kvviIdead~lt~~a~naLLk~LEep~--------~~t~fIl~t~~~~kl~~tI~SR- 132 (305)
T 2gno_A 79 E-----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPP--------EYAVIVLNTRRWHYLLPTIKSR- 132 (305)
T ss_dssp S-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCC--------TTEEEEEEESCGGGSCHHHHTT-
T ss_pred c-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCC--------CCeEEEEEECChHhChHHHHce-
Confidence 0 1456799999998763 3333332221111 466677766544 333222223
Q ss_pred eEEEcCCCCHHHHHHHHHHHh
Q 038494 317 KIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 317 ~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
.+++.++++++..+.+.+..
T Consensus 133 -~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -SEEEECCCCHHHHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHHHHh
Confidence 89999999999999998876
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=0.00011 Score=74.05 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=65.5
Q ss_pred hhhcCCCCCcEEEecCc-ccc-----cccccccCCCCCcEEeccCcccCCc------ccccCCCCCCEEEccCCCCCc--
Q 038494 561 LFFEGTEDLKVLSLSGI-HFS-----SLSSSLGHLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRYSDIKQ-- 626 (1209)
Q Consensus 561 ~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~L~~L~l~~~~l~~l------~~i~~L~~L~~L~l~~~~~~~-- 626 (1209)
..+...+.|+.|+|++| .+. .+...+....+|++|+|++|.+..- ..+...+.|++|++++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566777777777777 665 2445566667777777777776542 344555677777777776662
Q ss_pred ---cchhccCCCCCCEEec--cCCCCCcccC----chhhcCCCCCcEEECCCC
Q 038494 627 ---LPLEIGQLAQLQLLDL--SNCSSLVVIA----PNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 627 ---lp~~i~~L~~L~~L~l--~~~~~l~~~~----~~~l~~L~~L~~L~l~~~ 670 (1209)
+...+...++|++|++ ++ +.+.... ...+...++|++|++++|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4455666667777777 44 3343221 112334456666666554
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.39 E-value=0.00013 Score=77.14 Aligned_cols=79 Identities=25% Similarity=0.221 Sum_probs=55.8
Q ss_pred cCCCCCcEEEecCccccccc---ccccCCCCCcEEeccCcccCCcccccCCC--CCCEEEccCCCCC-ccch-------h
Q 038494 564 EGTEDLKVLSLSGIHFSSLS---SSLGHLINLQTLCLDWCQLEDVAAIGQLK--KLEILSFRYSDIK-QLPL-------E 630 (1209)
Q Consensus 564 ~~l~~Lr~L~L~~~~i~~lp---~~i~~l~~L~~L~l~~~~l~~l~~i~~L~--~L~~L~l~~~~~~-~lp~-------~ 630 (1209)
.+++.|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+..+..+. +|++|++++|.+. .+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 56788888888888887543 55678888888888888887765555555 7888888888765 2331 2
Q ss_pred ccCCCCCCEEec
Q 038494 631 IGQLAQLQLLDL 642 (1209)
Q Consensus 631 i~~L~~L~~L~l 642 (1209)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 456666666653
No 212
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.39 E-value=0.00013 Score=73.46 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=80.0
Q ss_pred CCCCccEEEeccC-CCccc--ccChhhhcCCCCCcEEEecCccccc-----ccccccCCCCCcEEeccCcccCC-----c
Q 038494 539 ECPQLKLLLLLAN-GDSYL--EISHLFFEGTEDLKVLSLSGIHFSS-----LSSSLGHLINLQTLCLDWCQLED-----V 605 (1209)
Q Consensus 539 ~~~~L~~L~l~~~-~~~~~--~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~L~~L~l~~~~l~~-----l 605 (1209)
..++|++|++.+| ..... ......+...+.|++|+|++|.+.+ +...+....+|++|+|++|.+.. +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4577888888776 42111 1122345678899999999999863 55667777899999999999865 3
Q ss_pred -ccccCCCCCCEEEc--cCCCCCc-----cchhccCCCCCCEEeccCC
Q 038494 606 -AAIGQLKKLEILSF--RYSDIKQ-----LPLEIGQLAQLQLLDLSNC 645 (1209)
Q Consensus 606 -~~i~~L~~L~~L~l--~~~~~~~-----lp~~i~~L~~L~~L~l~~~ 645 (1209)
..+...+.|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 67778889999999 7788773 4556677789999999984
No 213
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.28 E-value=5.1e-05 Score=73.00 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 160 AFDSRMKLFQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++|+...++++.+.+. ......|.|+|.+|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 46788888888888775 22334578999999999999999987653
No 214
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.23 E-value=0.017 Score=65.94 Aligned_cols=111 Identities=11% Similarity=0.168 Sum_probs=64.4
Q ss_pred ccccChhhhcCCC-CCcEEEecCcccccccc-cccCCCCCcEEeccCcc---cCCc--ccccCCCCCCEEEccCCCCCcc
Q 038494 555 YLEISHLFFEGTE-DLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQ---LEDV--AAIGQLKKLEILSFRYSDIKQL 627 (1209)
Q Consensus 555 ~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~---l~~l--~~i~~L~~L~~L~l~~~~~~~l 627 (1209)
...+.+..|.+++ .|+.+.+..+ ++.+.+ +|.++.+|+.+.+..+. ++.+ ..|..+.+|+.+.+.. .++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~-~~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD-SVTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT-TCSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC-cccee
Confidence 4455566666664 4677777643 555533 56677777777766543 4444 4566666666665543 24444
Q ss_pred ch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 628 PL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 628 p~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
+. .+..+.+|+.+.+.. .+..+....+..+.+|+.+.+..
T Consensus 129 ~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhhhhcccccccccc--eeeeecccceecccccccccccc
Confidence 33 356667777777654 34445555566677777776644
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.22 E-value=0.0035 Score=72.28 Aligned_cols=179 Identities=12% Similarity=0.141 Sum_probs=96.9
Q ss_pred ccchhhHHHHHHHHHHHHh---CC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEALR---ND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
..+++|.++.++++.+.+. .. -.+-|.|+|++|+|||++|+.++...... .+.++.+.-...
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH-
Confidence 4567787776666655433 21 12458899999999999999999876431 234444332110
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcc------ccc------cc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEK------DRK------QD 293 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~------~~~------~~ 293 (1209)
+ ........+.+........+.+|++|+++....-.. ......... ..+ ..
T Consensus 89 ---------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~--~~~~g~~~~~~~~l~~LL~~ld~~~~ 151 (476)
T 2ce7_A 89 ---------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG--AGLGGGHDEREQTLNQLLVEMDGFDS 151 (476)
T ss_dssp ---------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----------CHHHHHHHHHHHHHHHSCG
T ss_pred ---------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc--cccCcCcHHHHHHHHHHHHHHhccCC
Confidence 0 000123334444444446789999999976421000 000000000 000 01
Q ss_pred cCCcEEEEeccchhhhccc-C---CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 294 LRRRTIILTSRSKHLLTND-M---NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 294 ~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
..+..||.||...+..... . .-...+.++..+.++-.+++..++......++. ....|++.+.|..
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 1355666677665433211 1 223478899888888888888777532211111 1345788888876
No 216
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.22 E-value=0.0003 Score=78.84 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCccccc-cccccc--CCCCCcEEeccCc--c------cCCc-c
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSS-LSSSLG--HLINLQTLCLDWC--Q------LEDV-A 606 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~--~l~~L~~L~l~~~--~------l~~l-~ 606 (1209)
.+|+|+.|.+.++. ...++. + .+++|+.|+|..+.+.. ....++ .+++|++|+|+.+ . +..+ .
T Consensus 170 ~~P~L~~L~L~g~~--~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKGTN--NLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TCTTCCEEEEECCB--TCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cCCCCcEEEEeCCC--Cceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 45667777766542 112222 2 25667777776665541 111222 5667777766421 1 2222 1
Q ss_pred cc--cCCCCCCEEEccCCCCCc-cchhc---cCCCCCCEEeccCCCCCcccC----chhhcCCCCCcEEECCCC
Q 038494 607 AI--GQLKKLEILSFRYSDIKQ-LPLEI---GQLAQLQLLDLSNCSSLVVIA----PNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 607 ~i--~~L~~L~~L~l~~~~~~~-lp~~i---~~L~~L~~L~l~~~~~l~~~~----~~~l~~L~~L~~L~l~~~ 670 (1209)
.+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++. +.+.... ...+.++++|+.|+++.|
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 12 245677777777665541 11111 2456777777765 4444321 111344567777777655
No 217
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.21 E-value=0.039 Score=62.95 Aligned_cols=120 Identities=12% Similarity=0.151 Sum_probs=85.4
Q ss_pred CccEEEeccCCCcccccChhhhcCCCCCcEEEecCcc---cccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCC
Q 038494 542 QLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIH---FSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLE 615 (1209)
Q Consensus 542 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~---i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~ 615 (1209)
.|+++.+-. .+..+.+..|.++.+|+.+.+..+. ++.++. +|..+.+|+.+.+..+ ++.+ ..+..+.+|+
T Consensus 65 ~L~sI~iP~---svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD---TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECT---TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECC---CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 478887754 3667788889999999999998763 556654 6778888888777654 5555 6678889999
Q ss_pred EEEccCCCCCccc-hhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCC
Q 038494 616 ILSFRYSDIKQLP-LEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGD 669 (1209)
Q Consensus 616 ~L~l~~~~~~~lp-~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~ 669 (1209)
.+.+..+ +..++ ..+..+.+|+.+.+.. .+..+....+. ..+|..+.+..
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCCCSEEEECT
T ss_pred cccccce-eeeecccceecccccccccccc--eeeEecccccc-ccceeEEEECC
Confidence 9998753 44443 3467788899998875 45566555454 35677777654
No 218
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00091 Score=67.00 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHhC---CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCC
Q 038494 163 SRMKLFQDVVEALRN---DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNF 239 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 239 (1209)
++.+.++.+.+++.+ .....+.|+|++|+||||||+.+++.......+ .+++++ ..++...+........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcCch
Confidence 355556666666543 234689999999999999999999988632222 233333 4445544444332111
Q ss_pred CCCCChHHHHHHHHHHHhcCCeEEEEEeCCCc
Q 038494 240 DLNDSKPHRAKQLCQRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~ 271 (1209)
. . .+.+.+. +.-+||+||++.
T Consensus 91 ~-----~----~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 91 D-----T----KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp C-----S----HHHHHHH--TCSEEEEETCSS
T ss_pred H-----H----HHHHHhc--CCCEEEEeCCCC
Confidence 1 1 2333443 456899999984
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.18 E-value=0.0023 Score=74.55 Aligned_cols=181 Identities=12% Similarity=0.157 Sum_probs=101.3
Q ss_pred ccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 158 FEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
...++|.+..++++.+++.. ...+-|.|+|.+|+|||++|+.+++.... ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----
Confidence 45688999999888887652 33457899999999999999999877531 223344311
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC-------------ccccCCCCCCCCccccc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG-------------LEEIGIPFGDVDEKDRK 291 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 291 (1209)
+ ...+ ..........+......+++.+|++|+++.... ...+...+...
T Consensus 274 --l----~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~------ 335 (489)
T 3hu3_A 274 --I----MSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL------ 335 (489)
T ss_dssp --H----HTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS------
T ss_pred --h----hhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc------
Confidence 1 1100 011122333444444446789999999964311 00010000000
Q ss_pred cccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCC-hhHHHH
Q 038494 292 QDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGL-PVALST 366 (1209)
Q Consensus 292 ~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~ 366 (1209)
....+..||.||.......... .....+.+...+.++-.+++..++.......+ ....++++.+.|. +-.+..
T Consensus 336 ~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHH
T ss_pred ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHH
Confidence 0013445665666543221111 22357899999999999999988753222111 1234677777764 544544
Q ss_pred H
Q 038494 367 V 367 (1209)
Q Consensus 367 ~ 367 (1209)
+
T Consensus 414 L 414 (489)
T 3hu3_A 414 L 414 (489)
T ss_dssp H
T ss_pred H
Confidence 4
No 220
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.17 E-value=0.00019 Score=77.53 Aligned_cols=177 Identities=16% Similarity=0.173 Sum_probs=88.6
Q ss_pred ccchhhHHHHHHHHHHHHh---C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEALR---N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++..... |- .+..+.-.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~~- 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIEM- 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTTS-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EE---EechHHHHHh-
Confidence 4567776666666555443 1 112347799999999999999999876532 21 1111111000
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC-----------------ccccCCCCCCCCcc
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG-----------------LEEIGIPFGDVDEK 288 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-----------------~~~l~~~~~~~~~~ 288 (1209)
..+.... ....+.......++.+|++||++.... ...+...+....
T Consensus 84 --------~~~~~~~-------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-- 146 (268)
T 2r62_A 84 --------FVGLGAS-------RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG-- 146 (268)
T ss_dssp --------CSSSCSS-------SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS--
T ss_pred --------hcchHHH-------HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc--
Confidence 0010000 011122222224668999999975421 111211111100
Q ss_pred ccccccCCcEEEEeccchhhhccc-C---CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChh
Q 038494 289 DRKQDLRRRTIILTSRSKHLLTND-M---NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPV 362 (1209)
Q Consensus 289 ~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 362 (1209)
.......||.||......... . .....+.++..+.++-.+++...+.......+. ....|++.+.|.|-
T Consensus 147 ---~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~g 219 (268)
T 2r62_A 147 ---SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLAG 219 (268)
T ss_dssp ---CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSCH
T ss_pred ---cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCCH
Confidence 000234566677655322111 1 123567888899999999998876532111110 11245566667654
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.14 E-value=0.00076 Score=69.10 Aligned_cols=90 Identities=20% Similarity=0.258 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhCCC----ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCC
Q 038494 164 RMKLFQDVVEALRNDK----LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNF 239 (1209)
Q Consensus 164 R~~~~~~l~~~L~~~~----~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~ 239 (1209)
+...++.+.+++.... ...+.|+|.+|+|||+||+.+++....+ ...++|++++ .+...+......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 34 RIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc--
Confidence 4445566666665331 1688999999999999999999888643 3346666553 344444432211
Q ss_pred CCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 240 DLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
... ..+...+.+ . -+||+||++..
T Consensus 104 --~~~-----~~~~~~~~~-~-~~lilDei~~~ 127 (202)
T 2w58_A 104 --QTM-----NEKLDYIKK-V-PVLMLDDLGAE 127 (202)
T ss_dssp --CCC-----HHHHHHHHH-S-SEEEEEEECCC
T ss_pred --chH-----HHHHHHhcC-C-CEEEEcCCCCC
Confidence 111 123333432 2 39999999654
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.02 E-value=0.0024 Score=70.45 Aligned_cols=46 Identities=30% Similarity=0.288 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHHHhC--------------CCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 160 AFDSRMKLFQDVVEALRN--------------DKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++|++..++.+...+.. .....+.|+|.+|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999888888877753 2345688999999999999999998774
No 223
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.01 E-value=0.0031 Score=77.09 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=99.6
Q ss_pred ccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH
Q 038494 158 FEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV 224 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~ 224 (1209)
+.++.|-++.+++|.+++. . ...+-|.++|++|+|||+||+.+++..... .+.++.++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----
Confidence 4556676666666665543 1 124678999999999999999999876532 34454321
Q ss_pred HHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcccc-----------ccc
Q 038494 225 QKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEKDR-----------KQD 293 (1209)
Q Consensus 225 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~~~-----------~~~ 293 (1209)
+ . +. .....+..++.+.+......+.+|++|+++....-.. -..+....+ ...
T Consensus 274 --l----~---sk---~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~----~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 274 --I----M---SK---LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE----KTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp --H----H---SS---CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTT----TCCCTTHHHHHHHHHTHHHHCCG
T ss_pred --h----h---cc---cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccC----CCCChHHHHHHHHHHHHHhcccc
Confidence 1 1 10 0111244555666666556789999999986521000 000000000 001
Q ss_pred cCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 294 LRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 294 ~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
..+-.||.||...+...... .-...++++..+.++-.++|..+........+ ....+|++++.|.-
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d--vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHV 407 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT--CCHHHHHHHCCSCC
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc--cCHHHHHHhcCCCC
Confidence 13344555666554332222 23467899999999999999887753221111 11347888887764
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.95 E-value=0.0038 Score=72.73 Aligned_cols=48 Identities=19% Similarity=0.175 Sum_probs=36.9
Q ss_pred ccchhhHHHHHHHHHHHH---hCCC--ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 158 FEAFDSRMKLFQDVVEAL---RNDK--LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L---~~~~--~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+++|.++.++.+..++ ..+. .+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 467889988877655443 3332 35788999999999999999998875
No 225
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.94 E-value=0.00025 Score=75.08 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=54.6
Q ss_pred cCCCCCcEEeccCcccCCcc----cccCCCCCCEEEccCCCCCccchhccCCC--CCCEEeccCCCCCcccC------ch
Q 038494 587 GHLINLQTLCLDWCQLEDVA----AIGQLKKLEILSFRYSDIKQLPLEIGQLA--QLQLLDLSNCSSLVVIA------PN 654 (1209)
Q Consensus 587 ~~l~~L~~L~l~~~~l~~l~----~i~~L~~L~~L~l~~~~~~~lp~~i~~L~--~L~~L~l~~~~~l~~~~------~~ 654 (1209)
.++++|++|+|++|.++.+. .+..+++|++|+|++|.++.+ ..+..+. +|++|+++++.-...++ ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56888999999999887763 345788888899888888766 3344444 88888888843222222 12
Q ss_pred hhcCCCCCcEEEC
Q 038494 655 VISKFSRLEELYM 667 (1209)
Q Consensus 655 ~l~~L~~L~~L~l 667 (1209)
.+..+++|+.|+.
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3566777777763
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.89 E-value=0.0015 Score=72.11 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=60.8
Q ss_pred chhhHHHHHHHHHHHHhCC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++.-..... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~-- 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-V-- 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-H--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-H--
Confidence 4678888888887777632 13578999999999999999999887532 12345566654332211 1
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.+.++........ .....+...+.....-+|++|+++..
T Consensus 93 -~~l~g~~~~~~~~--~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 93 -SRLIGAPPGYVGY--EEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp -HHHHCCCTTSTTT--TTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HHhcCCCCccccc--cccchHHHHHHhCCCeEEEEeChhhc
Confidence 1122221111100 00012333333345579999999865
No 227
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.80 E-value=0.01 Score=65.94 Aligned_cols=182 Identities=18% Similarity=0.183 Sum_probs=95.3
Q ss_pred ccccchhhHHHHHHHHHHHHhC-----CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 156 KDFEAFDSRMKLFQDVVEALRN-----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.....++|.+..++.+.-.+.. .....+.|+|++|+||||||+.++...... |. .....-.....+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~---~~sg~~~~~~~~---- 92 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH---VTSGPVLVKQGD---- 92 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE---EEETTTCCSHHH----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE---EEechHhcCHHH----
Confidence 3456788888777777666642 233678999999999999999999987432 11 111111111111
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCC---CC------CCCccccc-cccCCcE
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIP---FG------DVDEKDRK-QDLRRRT 298 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~---~~------~~~~~~~~-~~~~~s~ 298 (1209)
...+...+ .++.++++|++.... ..+.+... .. .+...... ...+...
T Consensus 93 ------------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 93 ------------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ------------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ------------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 11112222 234577788876542 11111000 00 00000000 0001222
Q ss_pred EEE-eccchhhhccc-CCcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHH
Q 038494 299 IIL-TSRSKHLLTND-MNSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTV 367 (1209)
Q Consensus 299 ilv-TtR~~~v~~~~-~~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 367 (1209)
++- |++...+.... ........+++.+.++-.+++.+.+.... ..-..+.+..|+++++|.|-.+..+
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 332 34332221100 11224688999999999999988764211 1233567889999999999755443
No 228
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.73 E-value=0.022 Score=60.48 Aligned_cols=151 Identities=12% Similarity=0.138 Sum_probs=77.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCe
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKR 261 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~ 261 (1209)
-+.|+|++|+||||||+.++..... ..+.+... ++ .... .......+..+.+......+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~------~~----~~~~------~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DF----VEMF------VGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HH----HHSC------TTHHHHHHHHHHHHHTTSSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH------HH----HHHH------hhHHHHHHHHHHHHHHhcCC
Confidence 3899999999999999999987642 22333321 11 1100 00012233344444433356
Q ss_pred EEEEEeCCCcccCc----------------cccCCCCCCCCccccccccCCcEEEEeccchhhhcccC----CcceEEEc
Q 038494 262 VLIILDNIWKKLGL----------------EEIGIPFGDVDEKDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLI 321 (1209)
Q Consensus 262 ~LlvlDdv~~~~~~----------------~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l 321 (1209)
.++++||++..... ..+...+..+. ......++.||.......... .-...+.+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~------~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i 183 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------KDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 183 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC------TTCCEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC------CCCCEEEEEccCCchhCCHHHcCCCcCCeEEee
Confidence 89999999643110 01100000000 002233444565554432222 23457889
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 322 EVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 322 ~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
+..+.++-.+++..........++ .....+++.+.|.-
T Consensus 184 ~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 184 DAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 221 (254)
T ss_dssp CSCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCcCHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCCC
Confidence 999998888888877643211111 11335667776653
No 229
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.71 E-value=0.0066 Score=72.07 Aligned_cols=166 Identities=22% Similarity=0.190 Sum_probs=77.9
Q ss_pred cchhhHHHHHHHHHHHHh------CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALR------NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
..++|-++..+.+.+.+. ......+.++|++|+||||+|+.++...... |. -+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~---~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--FV---RISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--EE---EECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--eE---EEEecccchhhhhhhHHH
Confidence 345676666666554433 2245689999999999999999999887532 32 233333222222211111
Q ss_pred HHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC------ccccCCCCCCCCccccc-------cccCCcEE
Q 038494 233 SDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG------LEEIGIPFGDVDEKDRK-------QDLRRRTI 299 (1209)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------~~~l~~~~~~~~~~~~~-------~~~~~s~i 299 (1209)
...+.. ............. ..-++++|+++.... ...+...+.......+. .......+
T Consensus 156 ~~ig~~-------~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 156 TYVGAM-------PGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHhccC-------chHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 111110 1111112222211 334888999986521 12222222111100000 00134456
Q ss_pred EEeccchhhhc-ccCCcceEEEcCCCCHHHHHHHHHHHh
Q 038494 300 ILTSRSKHLLT-NDMNSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 300 lvTtR~~~v~~-~~~~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
|.||....... ........+.+++++.++-.+++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 66666543221 111233578899999988888877653
No 230
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.68 E-value=0.012 Score=62.96 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=84.4
Q ss_pred cccchhhHHHHHHHHHHHHh----C---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALR----N---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
.+.++.|-++.++.|.+.+. . .-.+-+.|+|++|+||||||+.++..... ..+++...+-.+
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 35667788877777776543 1 11123899999999999999999987543 244554432211
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCC-CCCCCccccc---cc---cCC
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIP-FGDVDEKDRK---QD---LRR 296 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~-~~~~~~~~~~---~~---~~~ 296 (1209)
. ........+..+.+......+.++++|+++........... .......... .+ ...
T Consensus 83 ~----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 M----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp S----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred h----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 0 00000223334444432346789999999764211000000 0000000000 01 123
Q ss_pred cEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 297 RTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 297 s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
.-++.+|....+..... .-...+.++..+.++-.++|+....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 34555666665443221 3346788998999999999988764
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.47 E-value=0.011 Score=64.10 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+.+.++|++|+|||++|+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999999885
No 232
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.44 E-value=0.064 Score=57.65 Aligned_cols=177 Identities=12% Similarity=0.136 Sum_probs=90.8
Q ss_pred ccccchhhHHHHHHHHHHHHh---CC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 156 KDFEAFDSRMKLFQDVVEALR---ND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~---~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
....+++|.++.+.++.+... .. -.+-+.|+|++|+||||||+.++..... ..+.+...
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH----
Confidence 335667787666555544332 10 1123899999999999999999987642 22333321
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccC------------c----cccCCCCCCCCc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLG------------L----EEIGIPFGDVDE 287 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------------~----~~l~~~~~~~~~ 287 (1209)
++ .... .......+..+.+......+.++++||++.... + ..+...+..+.
T Consensus 108 --~~----~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~- 174 (278)
T 1iy2_A 108 --DF----VEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE- 174 (278)
T ss_dssp --HH----HHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC-
T ss_pred --HH----HHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC-
Confidence 11 1100 000122333444444334568999999964310 0 01100000000
Q ss_pred cccccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 288 KDRKQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 288 ~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
......++.||.......... .-...+.++..+.++-.+++...+......++ .....+++.+.|..
T Consensus 175 -----~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 175 -----KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp -----TTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred -----CCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 002233444555554332111 23457889999999888888877643221111 11345777777754
No 233
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.37 E-value=0.0015 Score=81.61 Aligned_cols=157 Identities=19% Similarity=0.262 Sum_probs=83.2
Q ss_pred cchhhHHHHHHHHHHHHhC---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHH
Q 038494 159 EAFDSRMKLFQDVVEALRN---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQD 229 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~ 229 (1209)
..++|.+..++.+.+.+.. .....+.++|++|+|||++|+.+++..... -...+.++++.-......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~-- 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHST-- 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhccccccc--
Confidence 4578999988888888762 112368999999999999999999887422 223455665432110000
Q ss_pred HHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCccc--CccccCCCCCCCCc---cccccccCCcEEEEecc
Q 038494 230 KLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKL--GLEEIGIPFGDVDE---KDRKQDLRRRTIILTSR 304 (1209)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~---~~~~~~~~~s~ilvTtR 304 (1209)
. ...+...+.....-+|+||+++... ....+...+..+.. ..+.....+.+||+||.
T Consensus 567 -------------~-----~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 567 -------------S-----GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------C--------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------c-----cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0 0011112222344589999998652 11111111000000 00000114668888887
Q ss_pred chh-------------hhcccC-CcceEEEcCCCCHHHHHHHHHHHh
Q 038494 305 SKH-------------LLTNDM-NSQKIFLIEVLSKEEALQFFEKIV 337 (1209)
Q Consensus 305 ~~~-------------v~~~~~-~~~~~~~l~~L~~~e~~~lf~~~~ 337 (1209)
... ...... .-...+.+.+++.++-.+++....
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 311 000001 122589999999999888887654
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.22 E-value=0.02 Score=61.05 Aligned_cols=86 Identities=7% Similarity=0.072 Sum_probs=59.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCC----CChHHHH-HHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLN----DSKPHRA-KQLCQRL 256 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~----~~~~~~~-~~l~~~l 256 (1209)
++-|.|.+|+||||||.+++.....+..=..++|++..+.++.. .+++++.+.+.. ....+.+ ..+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998776542112478999988887764 367777654321 1123333 3444444
Q ss_pred ---hcCCeEEEEEeCCCcc
Q 038494 257 ---TKEKRVLIILDNIWKK 272 (1209)
Q Consensus 257 ---~~~k~~LlvlDdv~~~ 272 (1209)
.+++.-+||+|-+...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 4567899999999765
No 235
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.21 E-value=0.023 Score=58.64 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCC-----------CCCCCCh-HH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLN-----------FDLNDSK-PH 247 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~-----------~~~~~~~-~~ 247 (1209)
..++.|+|.+|+||||+|..++. .. -..++|++.....+...+.+ +.+..+.. ....... ..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRR 93 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHH
Confidence 46899999999999999999998 21 24788998877556655543 33333221 1111110 11
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 248 RAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 248 ~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
....+ ..+...+.-+||+|.+...
T Consensus 94 ~~~~~-~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 94 VIGSL-KKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHH-HHHCCTTEEEEEEECCCCC
T ss_pred HHHHH-HHHhhcCCCEEEEcCcHHH
Confidence 22222 2333225789999998654
No 236
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.19 E-value=0.02 Score=66.42 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=90.3
Q ss_pred ccchhhHHHHHHHHHHH---HhCC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 158 FEAFDSRMKLFQDVVEA---LRND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~---L~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
..+++|.++.+.++.+. +... -.+-|.|+|++|+|||+||+.++..... ..+.++.+.-...
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~- 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM- 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS-
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh-
Confidence 45677877666655544 3221 1234899999999999999999987642 2344444321100
Q ss_pred HHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCccccCCCCCCCCcc------cc---ccc---
Q 038494 226 KIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGLEEIGIPFGDVDEK------DR---KQD--- 293 (1209)
Q Consensus 226 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~~~~~~~~------~~---~~~--- 293 (1209)
........+..+.+......+.++++|+++....-..- ........ .. +.+
T Consensus 104 ---------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~--~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 104 ---------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS--GVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp ---------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS--STTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred ---------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc--CcCCCcHHHHHHHHHHHHHhccccc
Confidence 00000111112222111124589999999754210000 00000000 00 000
Q ss_pred cCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCCh
Q 038494 294 LRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLP 361 (1209)
Q Consensus 294 ~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 361 (1209)
..+..++.||.......... .-...+.++..+.++-.+++..++....-.++ .....|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 13345555666665433222 22357889999999888998877643221111 11345677777765
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.09 E-value=0.0045 Score=66.37 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=45.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc--CCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhc
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV--TENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTK 258 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 258 (1209)
+++.|+|++|+|||+||.+++.... ..++|+++ .+..+. .. .......+.+.+.+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~-------------~~---~~le~~l~~i~~~l~~ 182 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG-------------YN---TDFNVFVDDIARAMLQ 182 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT-------------CB---CCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh-------------hh---cCHHHHHHHHHHHHhh
Confidence 5778999999999999999998711 13456666 322110 00 2334555566666764
Q ss_pred CCeEEEEEeCCCcc
Q 038494 259 EKRVLIILDNIWKK 272 (1209)
Q Consensus 259 ~k~~LlvlDdv~~~ 272 (1209)
.+ +||+|++...
T Consensus 183 -~~-LLVIDsI~aL 194 (331)
T 2vhj_A 183 -HR-VIVIDSLKNV 194 (331)
T ss_dssp -CS-EEEEECCTTT
T ss_pred -CC-EEEEeccccc
Confidence 44 9999999754
No 238
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.90 E-value=0.027 Score=59.29 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=57.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc----cCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------CCCChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK----VFDKVVMAEVTENPDVQKIQDKLASDLDLNFD---------LNDSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---------~~~~~~ 246 (1209)
..++.|+|.+|+|||||+..++....... .-..++|++....+....+. .+++.++.... ......
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999998643211 13578999887765555443 34455543310 111111
Q ss_pred H---HHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 247 H---RAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 247 ~---~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+ ....+.+.+...+.-+||+|++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 1 2233444454457889999998654
No 239
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.88 E-value=0.04 Score=61.16 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=59.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcc----cCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------CCCCh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDK----VFDKVVMAEVTENPDVQKIQDKLASDLDLNFD---------LNDSK 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---------~~~~~ 245 (1209)
...++.|+|.+|+||||+|.+++....... .-..++|++....++..++.. +++.++.+.. .....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 346899999999999999999998743211 134789999988877776643 4455554321 01111
Q ss_pred H---HHHHHHHHHHhc--CCeEEEEEeCCCcc
Q 038494 246 P---HRAKQLCQRLTK--EKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ~---~~~~~l~~~l~~--~k~~LlvlDdv~~~ 272 (1209)
. .....+...+.+ .+.-+||+|.+...
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHH
Confidence 1 222334444444 56779999988643
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.85 E-value=0.01 Score=64.81 Aligned_cols=54 Identities=19% Similarity=0.295 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHhCC---CceEEEEEcCCCChHHHHHHHHHHHHh-hcccCCEEEEEEc
Q 038494 163 SRMKLFQDVVEALRND---KLNIIGVHGMGGVGKTTLVKQIAKQVM-EDKVFDKVVMAEV 218 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~~---~~~vi~I~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~ 218 (1209)
++...+..+.+++... ....+.|+|.+|+|||+||..+++... .+ . ..+.++.+
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g-~~v~~~~~ 189 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-G-VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-C-CCEEEEEH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEH
Confidence 4555566666676632 246889999999999999999999876 43 2 23455554
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.84 E-value=0.032 Score=61.55 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (1209)
..++.|+|.+|+||||||.+++...... -..++|++....++.. .+++++..... .....+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 4699999999999999999999877543 2357889887776654 45566554321 1222333333333
Q ss_pred HHhcCCeEEEEEeCCCcc
Q 038494 255 RLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv~~~ 272 (1209)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 333355678999998654
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.64 E-value=0.041 Score=60.57 Aligned_cols=92 Identities=22% Similarity=0.253 Sum_probs=59.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhccc----CCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------CCCChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKV----FDKVVMAEVTENPDVQKIQDKLASDLDLNFD---------LNDSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---------~~~~~~ 246 (1209)
..++.|+|.+|+||||+|.+++........ -..++|++....++..++.. +++.++.+.. ......
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999999977532210 24789999988877776653 4556654321 111112
Q ss_pred ---HHHHHHHHHHhc-CCeEEEEEeCCCcc
Q 038494 247 ---HRAKQLCQRLTK-EKRVLIILDNIWKK 272 (1209)
Q Consensus 247 ---~~~~~l~~~l~~-~k~~LlvlDdv~~~ 272 (1209)
.....+...+.+ .+.-+||+|.+...
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 123344444544 56789999998654
No 243
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.59 E-value=0.028 Score=70.00 Aligned_cols=155 Identities=11% Similarity=0.148 Sum_probs=86.9
Q ss_pred cccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 157 DFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
....++|.+..++++.+++.. .....|.|+|.+|+||||||+.++..... . .+.++.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~---~i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--E---EEEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--c---EEEEEchH---
Confidence 356788988888888877651 23457899999999999999999876532 1 23343211
Q ss_pred HHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcccCc-------------cccCCCCCCCCcccc
Q 038494 224 VQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKKLGL-------------EEIGIPFGDVDEKDR 290 (1209)
Q Consensus 224 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 290 (1209)
+ . + ............+.+......+.++++|+++....- ..+...+...
T Consensus 274 ---l----~---~---~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~----- 335 (806)
T 1ypw_A 274 ---I----M---S---KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL----- 335 (806)
T ss_dssp ---H----S---S---SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSS-----
T ss_pred ---h----h---h---hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhh-----
Confidence 1 0 0 000111233444444444346789999999644110 0000000000
Q ss_pred ccccCCcEEEEeccchhhhcccC----CcceEEEcCCCCHHHHHHHHHHHhC
Q 038494 291 KQDLRRRTIILTSRSKHLLTNDM----NSQKIFLIEVLSKEEALQFFEKIVG 338 (1209)
Q Consensus 291 ~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~lf~~~~~ 338 (1209)
....+..+|.||.......... .-...+.+...+.++-.+++...+.
T Consensus 336 -~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 336 -KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp -CTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred -cccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 0013445666665543222111 1235678888899999999987765
No 244
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.55 E-value=0.03 Score=61.79 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=59.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc---------cC-----CEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK---------VF-----DKVVMAEVTENPDVQKIQDKLASDLDLNFD----- 240 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~----- 240 (1209)
..++.|+|.+|+|||++|.+++....... .. ..++|++....++..++.+ +++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 46899999999999999999997642110 11 4789999988877776664 4555654321
Q ss_pred ----CCCChH---HHHHHHHHHHhc-CCeEEEEEeCCCcc
Q 038494 241 ----LNDSKP---HRAKQLCQRLTK-EKRVLIILDNIWKK 272 (1209)
Q Consensus 241 ----~~~~~~---~~~~~l~~~l~~-~k~~LlvlDdv~~~ 272 (1209)
.....+ .....+...+.+ .+.-+||+|.+...
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 111112 123344455544 45679999998643
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.55 E-value=0.015 Score=72.79 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=58.5
Q ss_pred chhhHHHHHHHHHHHHhC---------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRN---------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.-.....
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 467888888888777652 1224789999999999999999998773 2344555544221100
Q ss_pred HHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 231 LASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
+.+.++.+.. -........+...+......+|+||+++..
T Consensus 530 ~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0001111100 000111122334444345689999999865
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.44 E-value=0.052 Score=60.34 Aligned_cols=85 Identities=21% Similarity=0.204 Sum_probs=55.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFD-----LNDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (1209)
..++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++.+.. .... .+.+....+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~-~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDN-GEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSS-HHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCc-HHHHHHHHH
Confidence 4689999999999999999998876543 2468999998776654 2455554322 1122 233333333
Q ss_pred HHh-cCCeEEEEEeCCCcc
Q 038494 255 RLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~-~~k~~LlvlDdv~~~ 272 (1209)
.+. ....-+||+|.+...
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 343 345569999998654
No 247
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.43 E-value=0.013 Score=56.10 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
....+.|+|..|+|||||++.++...... .+ .++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 45689999999999999999999887642 11 256666544
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.40 E-value=0.052 Score=60.15 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (1209)
..++.|+|.+|+||||||.+++...... =..++|++....++.. .++.++..... ... .+....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~-~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDT-GEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSS-HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCC-HHHHHHHHH
Confidence 4689999999999999999999776543 2468899988776653 25556544221 122 233333333
Q ss_pred HHh-cCCeEEEEEeCCCcc
Q 038494 255 RLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~-~~k~~LlvlDdv~~~ 272 (1209)
.+. +.+.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 333 345679999998654
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.30 E-value=0.093 Score=58.41 Aligned_cols=166 Identities=10% Similarity=-0.018 Sum_probs=98.4
Q ss_pred HHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Q 038494 173 EALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQL 252 (1209)
Q Consensus 173 ~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l 252 (1209)
+.+...-.++..++|..|.||++.+..+.+..... .|+....+.+....++.++...+..
T Consensus 11 ~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~------------------- 70 (343)
T 1jr3_D 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA------------------- 70 (343)
T ss_dssp HHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH-------------------
T ss_pred HHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC-------------------
Confidence 33333445789999999999999999999876542 2432222233333344333222111
Q ss_pred HHHHhcCCeEEEEEeCCCc-c--cCccccCCCCCCCCccccccccCCcEEEEeccc-------hhhhcccCCcceEEEcC
Q 038494 253 CQRLTKEKRVLIILDNIWK-K--LGLEEIGIPFGDVDEKDRKQDLRRRTIILTSRS-------KHLLTNDMNSQKIFLIE 322 (1209)
Q Consensus 253 ~~~l~~~k~~LlvlDdv~~-~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-------~~v~~~~~~~~~~~~l~ 322 (1209)
.-+ -+.+-++|+|+++. . ..++.+...+.... +++.+|++|.. ..+.........+++..
T Consensus 71 -~pl-f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~--------~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 71 -MSL-FASRQTLLLLLPENGPNAAINEQLLTLTGLLH--------DDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp -HHH-CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCB--------TTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred -cCC-ccCCeEEEEECCCCCCChHHHHHHHHHHhcCC--------CCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEee
Confidence 112 24567889999876 3 33444433222212 46667766543 12332223455789999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHhCCChhHHHHHHH
Q 038494 323 VLSKEEALQFFEKIVGNSAKASAFQPLADEIVGKCGGLPVALSTVAN 369 (1209)
Q Consensus 323 ~L~~~e~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 369 (1209)
+++.++....+.+.+.... ..-..+.+..|++.++|...++...-.
T Consensus 141 ~l~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~gdl~~~~~ele 186 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLN-LELDDAANQVLCYCYEGNLLALAQALE 186 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTT-CEECHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhchHHHHHHHHHH
Confidence 9999999988887764222 112346778899999998887765433
No 250
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.30 E-value=0.52 Score=53.30 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 35799999999999999999999877653
No 251
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.12 E-value=0.46 Score=53.77 Aligned_cols=89 Identities=24% Similarity=0.187 Sum_probs=47.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCC---CCChHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDL---NDSKPHRAKQLCQR 255 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 255 (1209)
..+|.++|.+|+||||++..++.....+. ..+..++... .....+-+....+..+.+... ..+...........
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 57999999999999999999998876532 2344444332 112233334444444443221 11222223333333
Q ss_pred HhcCCeEEEEEeCCC
Q 038494 256 LTKEKRVLIILDNIW 270 (1209)
Q Consensus 256 l~~~k~~LlvlDdv~ 270 (1209)
+.....-++|+|-..
T Consensus 175 a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAG 189 (433)
T ss_dssp TTTTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 332233455677553
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.12 E-value=0.058 Score=59.78 Aligned_cols=85 Identities=21% Similarity=0.294 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (1209)
..++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++..... ... .+....+.+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~-~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDT-GEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSS-HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCC-HHHHHHHHH
Confidence 4689999999999999999999876543 2368999998777643 24555543211 112 233333334
Q ss_pred HHh-cCCeEEEEEeCCCcc
Q 038494 255 RLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~-~~k~~LlvlDdv~~~ 272 (1209)
.+. +.+.-+||+|.+...
T Consensus 135 ~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHTCCSEEEEECGGGC
T ss_pred HHHhccCCCEEEEcCHHHh
Confidence 332 345568999998644
No 253
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.12 E-value=0.87 Score=51.76 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC-cCHHHHHHHHHHHhCCCCCC---CCChHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN-PDVQKIQDKLASDLDLNFDL---NDSKPHRAKQLCQ 254 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 254 (1209)
..++|.++|.+|+||||+|..++.....+.. ..+.-+++... ....+.+.......+.+... ..+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 3579999999999999999999988875412 24455555432 22333333334444433211 1222333344455
Q ss_pred HHhcCCeEEEEEeCC
Q 038494 255 RLTKEKRVLIILDNI 269 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv 269 (1209)
.+....--++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 554212235666764
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.05 E-value=0.03 Score=70.71 Aligned_cols=60 Identities=23% Similarity=0.391 Sum_probs=42.9
Q ss_pred cchhhHHHHHHHHHHHHhCC---------CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 159 EAFDSRMKLFQDVVEALRND---------KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++...... ...+.++++.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~ 626 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTE 626 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTT
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 35789999888888877521 125789999999999999999998874321 1234455543
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.90 E-value=0.084 Score=59.43 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc----cCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------CCCChH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK----VFDKVVMAEVTENPDVQKIQDKLASDLDLNFD---------LNDSKP 246 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---------~~~~~~ 246 (1209)
..++.|+|.+|+|||||+..++-...... .-..++|++....+....+ +.+++.++.... ......
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46999999999999999998874433211 2356899988776665554 346666664321 111111
Q ss_pred ---HHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 247 ---HRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 247 ---~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.....+...+...+.-+||+|.+...
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 22233444444457789999987543
No 256
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.86 E-value=0.058 Score=59.05 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=54.6
Q ss_pred HHHHHh-CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCC-EEEEEEcCCCcC-HHHHHHHHHHHhCCC---CCCCCC
Q 038494 171 VVEALR-NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD-KVVMAEVTENPD-VQKIQDKLASDLDLN---FDLNDS 244 (1209)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~s~~~~-~~~l~~~i~~~l~~~---~~~~~~ 244 (1209)
.++.+. -.....++|+|.+|+|||||++.+++....+ +-+ .++++-+.+... +.+ +.+.+... ......
T Consensus 164 aID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~-~~~v~~I~~lIGER~~Ev~~----~~~~~~~~vV~atadep 238 (422)
T 3ice_A 164 VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN-HPDCVLMVLLIDERPEEVTE----MQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH-CTTSEEEEEEESSCHHHHHH----HHTTCSSEEEEECTTSC
T ss_pred eeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc-CCCeeEEEEEecCChHHHHH----HHHHhCeEEEEeCCCCC
Confidence 344443 2345689999999999999999998876542 222 244577776542 222 22333110 011111
Q ss_pred hHHHH------HHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 245 KPHRA------KQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 245 ~~~~~------~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
..... -.+-+++. +++.+||++||+...
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 11111 12233343 479999999998765
No 257
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.74 E-value=0.1 Score=54.26 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=33.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDK 230 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~ 230 (1209)
..++.|+|.+|+|||||++.++...... -..++|+.... ....+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHH
Confidence 3689999999999999999999766532 23567776544 34444333
No 258
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.72 E-value=0.0065 Score=57.87 Aligned_cols=45 Identities=11% Similarity=0.074 Sum_probs=32.3
Q ss_pred chhhHHHHHHHHHHHHhC--CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRN--DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.++|+...++++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467888888887777652 223457799999999999999987643
No 259
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.52 E-value=0.15 Score=57.77 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=73.2
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCC
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLE 615 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~ 615 (1209)
.+.+++.+.+..+ ...+....|.++..|+.+.+..+ ++.+.. .+.++.+|+.+.+..+ ++.+ ..+.++.+|+
T Consensus 215 ~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccceeeeccc---eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 4555666555432 34455555666777777777654 444433 4566667777766533 4444 4566677777
Q ss_pred EEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECC
Q 038494 616 ILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMG 668 (1209)
Q Consensus 616 ~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~ 668 (1209)
.+.+.++.++.++. .+.++.+|+.+.+.. .++.+....+.++.+|+.+.+.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 77776666666543 366667777777653 3555555556666777666653
No 260
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.50 E-value=0.22 Score=56.39 Aligned_cols=101 Identities=25% Similarity=0.345 Sum_probs=64.4
Q ss_pred HHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCC----------
Q 038494 171 VVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLN---------- 238 (1209)
Q Consensus 171 l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~---------- 238 (1209)
.++.+.. .+...+.|+|.+|+|||+|+..+++.... .+-+.++++-+.+.. .+.++++.+...-...
T Consensus 143 ~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvv 221 (482)
T 2ck3_D 143 VVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVAL 221 (482)
T ss_dssp HHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEE
T ss_pred EEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEE
Confidence 4444442 34468899999999999999999988643 334667788888765 4566777776542221
Q ss_pred --CCCCCCh------HHHHHHHHHHHhc--CCeEEEEEeCCCcc
Q 038494 239 --FDLNDSK------PHRAKQLCQRLTK--EKRVLIILDNIWKK 272 (1209)
Q Consensus 239 --~~~~~~~------~~~~~~l~~~l~~--~k~~LlvlDdv~~~ 272 (1209)
...+... ....-.+-+++.. ++.+||++||+...
T Consensus 222 V~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 222 VYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0111111 1122345555653 79999999998754
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.44 E-value=0.041 Score=55.80 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhC---CCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 163 SRMKLFQDVVEALRN---DKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~---~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.|++.++.+.+.+.. ....+|+|.|..|.||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 366677888887763 34579999999999999999999887653
No 262
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.42 E-value=0.11 Score=58.89 Aligned_cols=91 Identities=19% Similarity=0.306 Sum_probs=54.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCC-------CCCCCCChHHH----
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDL-------NFDLNDSKPHR---- 248 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~-------~~~~~~~~~~~---- 248 (1209)
..+.|+|.+|+|||||+..++.....+. -+.++++.+.+.. ...++++.+...-.. ....++.....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999999998876432 2345666666654 455555555432100 00111111111
Q ss_pred -HHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 249 -AKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 249 -~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
.-.+.+++. ++++.||++||+..-
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 123445554 389999999999654
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.36 E-value=0.12 Score=55.78 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLT 257 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 257 (1209)
...+|+|+|.+|+||||++..++.....+.. ..+..+.... .....+.++...+..+.+...... ..........+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~-~~~l~~al~~~~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYT-KEEFQQAKELFS 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSS-HHHHHHHHHHGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCC-HHHHHHHHHHhc
Confidence 3469999999999999999999988764211 2455555433 223333444444444444322222 222333333332
Q ss_pred cCCeEEEEEeC
Q 038494 258 KEKRVLIILDN 268 (1209)
Q Consensus 258 ~~k~~LlvlDd 268 (1209)
+.-++|+|-
T Consensus 182 --~~dlvIiDT 190 (296)
T 2px0_A 182 --EYDHVFVDT 190 (296)
T ss_dssp --GSSEEEEEC
T ss_pred --CCCEEEEeC
Confidence 345788884
No 264
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.30 E-value=0.17 Score=55.27 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=38.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASD 234 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~ 234 (1209)
...++.|.|.+|+||||+|.+++.....+. ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999998776542 578888765 4455666555543
No 265
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.19 E-value=0.15 Score=52.76 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcc----cCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------CCCCh-
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDK----VFDKVVMAEVTENPDVQKIQDKLASDLDLNFD---------LNDSK- 245 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---------~~~~~- 245 (1209)
..+++|+|++|+|||||++.++....... .-..++|+.......... ...+.+..+.... .....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 46999999999999999999987543311 134688888765444333 2334444433211 00111
Q ss_pred --HHHHHHHHHHHh-----cCCeEEEEEeCCCcc
Q 038494 246 --PHRAKQLCQRLT-----KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 --~~~~~~l~~~l~-----~~k~~LlvlDdv~~~ 272 (1209)
......+...+. ..++-+||+|.....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 111233333343 457789999987653
No 266
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.05 E-value=0.027 Score=60.16 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=39.2
Q ss_pred ccchhhHHHHHHHHHHHHhC--CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 158 FEAFDSRMKLFQDVVEALRN--DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 158 ~~~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
...|+|+...+..+.+.+.. .....|.|+|.+|+|||++|+.+++...... ...+.++++.
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~ 67 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAA 67 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGG
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCC
Confidence 34678888888887776652 2235678999999999999999987654221 1234566554
No 267
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.82 E-value=0.08 Score=64.78 Aligned_cols=96 Identities=15% Similarity=0.244 Sum_probs=62.3
Q ss_pred ccccchhhHHHHHHHHHHHHhC-------------CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc
Q 038494 156 KDFEAFDSRMKLFQDVVEALRN-------------DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP 222 (1209)
Q Consensus 156 ~~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~ 222 (1209)
..+..+.|-++.++.|.+.+.- ...+-|.++|++|+|||.+|+++++..... ++.++.
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~-- 544 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG-- 544 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH--
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc--
Confidence 3355666777777777665541 123457899999999999999999887642 233321
Q ss_pred CHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCCeEEEEEeCCCcc
Q 038494 223 DVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 223 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 272 (1209)
.+ ++. .... ..+..++.+.+.-++..+.+|++|+++..
T Consensus 545 --~~----l~s---~~vG---ese~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 --PE----LLT---MWFG---ESEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp --HH----HHT---TTCS---SCHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred --ch----hhc---cccc---hHHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 11 111 1111 11566777877777678999999999864
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.73 E-value=0.061 Score=54.91 Aligned_cols=52 Identities=23% Similarity=0.321 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhC--CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcC
Q 038494 166 KLFQDVVEALRN--DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVT 219 (1209)
Q Consensus 166 ~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s 219 (1209)
+.+++|.+.+.. ....+|+|+|..|.|||||++.++....... ..+.++...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 445566666553 4567999999999999999999988776421 124455543
No 269
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.62 E-value=0.03 Score=62.74 Aligned_cols=49 Identities=20% Similarity=0.237 Sum_probs=36.4
Q ss_pred cccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 157 DFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 157 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
....++|.+..+..+..........-+.|+|.+|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 3567889887666655444433334588999999999999999998764
No 270
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.51 E-value=0.37 Score=52.67 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
..++.|.|.+|+||||+|..++...... =..++|++.. .+..++...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCC--CCHHHHHHHHHH
Confidence 4689999999999999999999887652 2467777664 445666665544
No 271
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.45 E-value=0.043 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|.|.|++|+||||+|+.+++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988754
No 272
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.38 E-value=0.3 Score=51.14 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=30.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
..++.|.|.+|+||||+|.+++...... -..++|++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEH 62 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 4589999999999999999988766532 246788876543
No 273
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.38 E-value=0.39 Score=51.71 Aligned_cols=89 Identities=20% Similarity=0.145 Sum_probs=52.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCCCCC---CCChHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLNFDL---NDSKPHRAKQLCQR 255 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 255 (1209)
..+++++|.+|+||||++..++...... -..+.+++..... ...+.++...+..+.+... ..+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999887643 2356666654322 2233344455555543211 12334444455555
Q ss_pred HhcCCeEEEEEeCCC
Q 038494 256 LTKEKRVLIILDNIW 270 (1209)
Q Consensus 256 l~~~k~~LlvlDdv~ 270 (1209)
+....--++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 542232367788753
No 274
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.37 E-value=0.26 Score=53.10 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=50.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC-HHHHHHHHHHHhCCCCC---CCCChHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD-VQKIQDKLASDLDLNFD---LNDSKPHRAKQLCQR 255 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~l~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 255 (1209)
..+++|+|.+|+||||++..++...... -..+.++....... ....+..+.+..+.+.. ......+..+.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999887643 23456665533221 11223344555554332 122323343444444
Q ss_pred HhcCCeEEEEEeCC
Q 038494 256 LTKEKRVLIILDNI 269 (1209)
Q Consensus 256 l~~~k~~LlvlDdv 269 (1209)
+.....=+||+|--
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43123457788875
No 275
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.30 E-value=0.5 Score=50.65 Aligned_cols=55 Identities=24% Similarity=0.097 Sum_probs=35.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcc-cCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDK-VFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~-~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
....+|+|+|..|+||||+|+.+........ ....+..|+...-+-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 3457999999999999999999988775421 122344445554333334444443
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.26 E-value=0.051 Score=53.49 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|+|.|++|+||||+|+.++....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987764
No 277
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.25 E-value=0.29 Score=51.38 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
..+++|+|+.|+|||||++.++....... -..++|+....
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 46899999999999999999985433111 23456665443
No 278
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.24 E-value=0.23 Score=55.00 Aligned_cols=93 Identities=20% Similarity=0.201 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccC----CEEEEEEcCCCcCHHHHHHHHHHHhCCCCC---------CCCCh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVF----DKVVMAEVTENPDVQKIQDKLASDLDLNFD---------LNDSK 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~---------~~~~~ 245 (1209)
...++.|+|.+|+|||||+..++......... +.++|++....+...++ ..+++..+.... .....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 34799999999999999999999775311111 35689988766544433 334554433210 00111
Q ss_pred ---HHHHHHHHHHHhc-----CCeEEEEEeCCCcc
Q 038494 246 ---PHRAKQLCQRLTK-----EKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ---~~~~~~l~~~l~~-----~k~~LlvlDdv~~~ 272 (1209)
...+..+...+.+ .+.-+||+|.+...
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1122223333332 46789999998654
No 279
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.08 E-value=0.058 Score=54.61 Aligned_cols=26 Identities=38% Similarity=0.434 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|.|+|++|+||||+|+.++....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 280
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.00 E-value=0.053 Score=60.10 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=37.3
Q ss_pred cchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 159 EAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 159 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..++|+++.++.+...+..+ ..+.++|.+|+|||++|+.+++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789988888888877654 3678999999999999999988764
No 281
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.97 E-value=0.1 Score=54.08 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 165 MKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 165 ~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
++..+.+.+.+.......|+|+|.+|+|||||+..+......
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 344455555555566789999999999999999999987643
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.85 E-value=0.063 Score=53.57 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+.|.|+|++|+||||+|+.+++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988764
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.84 E-value=0.22 Score=53.73 Aligned_cols=88 Identities=18% Similarity=0.205 Sum_probs=49.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCH--HHHHHHHHHHhCCCCCC---CCChHHH-HHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDV--QKIQDKLASDLDLNFDL---NDSKPHR-AKQL 252 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~l~~~i~~~l~~~~~~---~~~~~~~-~~~l 252 (1209)
...+|+|+|.+|+||||++..++...... -..+.++... .+.. .+-++..++..+.+... ..+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 34699999999999999999999887653 2345556543 2222 22233455555543211 1121222 1233
Q ss_pred HHHHhcCCeEEEEEeCCC
Q 038494 253 CQRLTKEKRVLIILDNIW 270 (1209)
Q Consensus 253 ~~~l~~~k~~LlvlDdv~ 270 (1209)
...+.. ..-++|+|-.-
T Consensus 180 ~~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHT-TCSEEEEEECC
T ss_pred HHHHhc-CCCEEEEECCC
Confidence 333443 44478888653
No 284
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.83 E-value=0.3 Score=55.49 Aligned_cols=101 Identities=24% Similarity=0.340 Sum_probs=65.4
Q ss_pred HHHHHh-CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHHHhCCC-------C--
Q 038494 171 VVEALR-NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLASDLDLN-------F-- 239 (1209)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~-------~-- 239 (1209)
.++.+. =.+...++|+|.+|+|||+|+..+++.... .+-+.++++-+.+.. ...++++.+...-... .
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 344444 234467899999999999999999988643 335677888888765 4667777776542221 0
Q ss_pred ----CCCCC------hHHHHHHHHHHHhc--CCeEEEEEeCCCcc
Q 038494 240 ----DLNDS------KPHRAKQLCQRLTK--EKRVLIILDNIWKK 272 (1209)
Q Consensus 240 ----~~~~~------~~~~~~~l~~~l~~--~k~~LlvlDdv~~~ 272 (1209)
..... .....-.+-+++.. ++.+|+++||+...
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 00111 12223345666664 79999999998654
No 285
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.82 E-value=0.057 Score=58.74 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=35.6
Q ss_pred chhhHHHHHHHHHHHHhC--CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 160 AFDSRMKLFQDVVEALRN--DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467888888888777652 334567899999999999999998865
No 286
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.77 E-value=0.44 Score=51.65 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHHHhC----CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 161 FDSRMKLFQDVVEALRN----DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 161 ~~gR~~~~~~l~~~L~~----~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
++|....+..+...+.. ....+|+|.|..|+||||+|+.+.........-..+..+....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 44555555555554442 2345899999999999999999987765211112355555544
No 287
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=92.71 E-value=0.14 Score=55.90 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHh----CCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 163 SRMKLFQDVVEALR----NDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 163 gR~~~~~~l~~~L~----~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+-+...+.+++.+. .+....|.|+|+.|+||||+++.++.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33444555555543 455667999999999999999999887653
No 288
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.70 E-value=0.35 Score=54.53 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=89.8
Q ss_pred CCCCccEEEeccCCCcccccChhhhcCCCCCcEEEecCcccccccc-cccCCCCCcEEeccCcccCCc--ccccCCCCCC
Q 038494 539 ECPQLKLLLLLANGDSYLEISHLFFEGTEDLKVLSLSGIHFSSLSS-SLGHLINLQTLCLDWCQLEDV--AAIGQLKKLE 615 (1209)
Q Consensus 539 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~ 615 (1209)
.+.+|+.+.+..+ ...+....|.++..|..+.+..+ +..++. .+..+.+|+.+.+.++.++.+ ..|.++.+|+
T Consensus 238 ~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 238 GMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred CCccceEEEcCCC---ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 6888999888653 56677788899999999999754 666654 688999999999999888888 7789999999
Q ss_pred EEEccCCCCCccch-hccCCCCCCEEeccCCCCCcccCchhhcCCC
Q 038494 616 ILSFRYSDIKQLPL-EIGQLAQLQLLDLSNCSSLVVIAPNVISKFS 660 (1209)
Q Consensus 616 ~L~l~~~~~~~lp~-~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~ 660 (1209)
.+.+.. .++.++. .+.++.+|+.+.+.. .++.+....+.++.
T Consensus 314 ~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c~ 356 (379)
T 4h09_A 314 SVTLPT-ALKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGSS 356 (379)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTSS
T ss_pred EEEcCc-cccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCCC
Confidence 999975 4776754 578889999888864 36666555565553
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.67 E-value=0.085 Score=53.40 Aligned_cols=29 Identities=31% Similarity=0.474 Sum_probs=25.5
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 177 NDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 177 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.....+|+|+|++|.||||+|+.++....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999998875
No 290
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.58 E-value=0.076 Score=53.02 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...+|.|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999988764
No 291
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.50 E-value=0.067 Score=52.81 Aligned_cols=20 Identities=35% Similarity=0.649 Sum_probs=18.8
Q ss_pred eEEEEEcCCCChHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQI 200 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~ 200 (1209)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 292
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.49 E-value=0.049 Score=63.26 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=36.3
Q ss_pred chhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 160 AFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++|+++.++.+...+..+ .-|.|+|++|+|||++|+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 5778888888888777654 3688999999999999999988664
No 293
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.49 E-value=0.21 Score=52.51 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i 231 (1209)
..++.|.|.+|+|||++|.+++.....+. -..+++++... +..++.+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccC--CHHHHHHHH
Confidence 46899999999999999999876543221 23566666544 344444443
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.49 E-value=0.28 Score=65.67 Aligned_cols=86 Identities=17% Similarity=0.158 Sum_probs=58.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLC 253 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 253 (1209)
..+.|.|+|++|+|||+||.+++.....+ =..++|+++.+.++... ++.++.+.+. ....+...+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 35689999999999999999999876643 24678898888777665 4555533221 112233334444
Q ss_pred HHHhcCCeEEEEEeCCCc
Q 038494 254 QRLTKEKRVLIILDNIWK 271 (1209)
Q Consensus 254 ~~l~~~k~~LlvlDdv~~ 271 (1209)
....+.+.-+||+|.+..
T Consensus 1499 ~lvr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHhcCCCCEEEEcChhH
Confidence 444456788999999853
No 295
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.44 E-value=0.18 Score=46.74 Aligned_cols=51 Identities=14% Similarity=0.197 Sum_probs=25.5
Q ss_pred EEEecCcccc--cccccccCCCCCcEEeccCcccCCc--ccccCCCCCCEEEccCCC
Q 038494 571 VLSLSGIHFS--SLSSSLGHLINLQTLCLDWCQLEDV--AAIGQLKKLEILSFRYSD 623 (1209)
Q Consensus 571 ~L~L~~~~i~--~lp~~i~~l~~L~~L~l~~~~l~~l--~~i~~L~~L~~L~l~~~~ 623 (1209)
+++.+++.++ .+|..+. .+|++|+|++|.++.+ ..|..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 5554322 2455555555555554 334445555555555543
No 296
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.44 E-value=0.072 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAK 202 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~ 202 (1209)
.+|.|.|++|+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.37 E-value=0.082 Score=53.50 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
....+|+|+|+.|.||||+++.++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998765
No 298
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.37 E-value=0.11 Score=53.54 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 163 SRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+.++....+.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 13 ENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred hcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3344455555555455678999999999999999999988764
No 299
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.30 E-value=0.076 Score=53.26 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
...+|+|+|++|.||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.27 E-value=0.085 Score=52.34 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987653
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.25 E-value=0.066 Score=52.68 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987754
No 302
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.25 E-value=1 Score=49.11 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=38.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC-CcCHHHHHHHHHHHhCC
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE-NPDVQKIQDKLASDLDL 237 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~l~~~i~~~l~~ 237 (1209)
.+..+++|+|+.|+||||+++.++...+.. -..+.++...- .....+-++...+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 446799999999999999999999877653 22445554332 12344445555666664
No 303
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.23 E-value=0.084 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.+|.|.|++|+||||+|+.+++....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999988763
No 304
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.12 E-value=1.1 Score=51.78 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..++|+|+|.+|+||||++..++.....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999987764
No 305
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.09 E-value=0.081 Score=52.49 Aligned_cols=26 Identities=46% Similarity=0.494 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++|.|.|++|+||||+|+.+++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999987763
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.08 E-value=0.098 Score=52.51 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|.|.|++|+||||+|+.++....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987663
No 307
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.03 E-value=0.085 Score=53.94 Aligned_cols=113 Identities=13% Similarity=0.016 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCC--CChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLN--DSKPHRAKQLCQRL 256 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l 256 (1209)
...++.|+|..|.||||++..++++...+. ..++.+....... ...+++++++...... ....+..+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 356889999999999999999998886542 2334443332211 1224455555432211 11122222232222
Q ss_pred hcCCeEEEEEeCCCccc--CccccCCCCCCCCccccccccCCcEEEEeccchh
Q 038494 257 TKEKRVLIILDNIWKKL--GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 257 ~~~k~~LlvlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 307 (1209)
.+++.-+||+|.+.... .++.+.. + . ..|..||+|-+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L---------~-~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-L---------A-ENGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-H---------H-HTTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-H---------H-hCCCeEEEEecccc
Confidence 22345699999997531 2222211 0 0 13667888888654
No 308
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.95 E-value=0.077 Score=53.82 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+|+|.|+.|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.92 E-value=0.094 Score=52.56 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|.|.|++|+||||+|+.+++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 310
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.87 E-value=0.11 Score=58.28 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=36.3
Q ss_pred chhhHHHHHHHHHHHHh-------------C--CCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 160 AFDSRMKLFQDVVEALR-------------N--DKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++|.+..++.+..++. . .....|.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35788888888887772 1 1235689999999999999999998763
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.79 E-value=0.1 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|.|.|++|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988764
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.74 E-value=0.86 Score=51.46 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=48.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHH--HHHHHHHHhCCCCCC---CCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQK--IQDKLASDLDLNFDL---NDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~--l~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 254 (1209)
..+|+|+|.+|+||||++..++.....+ -..+..+.. +.+.... .++...+..+.+... ..+..+......+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 4689999999999999999999887653 234555554 3333322 234444555443211 1222333344445
Q ss_pred HHhcCCeEEEEEeCC
Q 038494 255 RLTKEKRVLIILDNI 269 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv 269 (1209)
.+....--++|+|-.
T Consensus 175 ~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 175 KARLEARDLILVDTA 189 (425)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHHCCCCEEEEcCC
Confidence 543112225666754
No 313
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.73 E-value=0.11 Score=51.71 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
....|.|+|+.|+||||+|+.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.71 E-value=0.13 Score=49.94 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..+++.|.|..|+||||++..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 3578999999999999999999988764
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.71 E-value=0.088 Score=51.94 Aligned_cols=24 Identities=38% Similarity=0.482 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|.|.|++|+||||+|+.++....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988764
No 316
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.67 E-value=0.11 Score=50.85 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|.|.|+.|+||||+|+.++....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 317
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.65 E-value=0.13 Score=58.17 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998763
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.64 E-value=0.12 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+|+|+|+.|.||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 319
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.56 E-value=0.18 Score=55.19 Aligned_cols=102 Identities=20% Similarity=0.210 Sum_probs=54.7
Q ss_pred HHHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCC-EEEEEEcCCCcC-HHHHHHHHHHHhCCCCCCCCCh-
Q 038494 170 DVVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD-KVVMAEVTENPD-VQKIQDKLASDLDLNFDLNDSK- 245 (1209)
Q Consensus 170 ~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~s~~~~-~~~l~~~i~~~l~~~~~~~~~~- 245 (1209)
+.++.+.. .+...+.|+|.+|+|||+|+..+++....+ +-+ .++++-+.+... +.++.+.+...+-....+.+..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~ 242 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDK 242 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHH
Confidence 45555552 345688999999999999999999877542 223 235677765431 1111111100000001111110
Q ss_pred ----HHHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 246 ----PHRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 ----~~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++.+||++||+...
T Consensus 243 r~~~a~~altiAEyfrd~G~dVLil~DslTR~ 274 (427)
T 3l0o_A 243 QVKVAELTLEMAKRLVEFNYDVVILLDSLTRL 274 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecccchHH
Confidence 111122334443 479999999998755
No 320
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.52 E-value=0.11 Score=52.89 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+|+|+|+.|+||||+++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987653
No 321
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.49 E-value=0.18 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+|.|.|++|+||||+|+.+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.44 E-value=0.097 Score=53.18 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+|+|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998765
No 323
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.42 E-value=0.18 Score=50.06 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHhC-CCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 168 FQDVVEALRN-DKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 168 ~~~l~~~L~~-~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+..+..++.. ++...+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444455443 2334799999999999999999998874
No 324
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.40 E-value=0.097 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+.|.|.|++|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4688999999999999999977643
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.40 E-value=0.11 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988765
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.35 E-value=0.13 Score=51.87 Aligned_cols=26 Identities=38% Similarity=0.368 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|+|.|++|+||||+|+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 327
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.34 E-value=0.24 Score=51.71 Aligned_cols=27 Identities=22% Similarity=0.099 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.....|.|.|++|+||||+|+.+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 328
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.34 E-value=1.4 Score=50.25 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=30.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD 223 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~ 223 (1209)
...+++|+|..|+||||+++.++...... .+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35699999999999999999999877643 3344454444444
No 329
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.29 E-value=0.096 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
++|.|.|++|+||||+|+.++....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988764
No 330
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.17 E-value=0.15 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+.++|.|.|++|+||||.|+.+++...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999999998764
No 331
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.14 E-value=0.65 Score=53.64 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
..++.|.|.+|+||||+|..++....... -..++|++... +..++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 46899999999999999999998876531 12577877654 3455555543
No 332
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.11 E-value=0.14 Score=51.19 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..++|+|+|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987643
No 333
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.02 E-value=0.15 Score=55.35 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
++.++|+|.|-||+||||.|..++.-..... ..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4578999999999999999999998887542 2466666653
No 334
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.01 E-value=0.11 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|.|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.01 E-value=0.15 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+|+|.|+.|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998764
No 336
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.96 E-value=0.14 Score=52.07 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998763
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.95 E-value=0.14 Score=50.94 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|+|.|++|+||||+|+.+++...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987653
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.94 E-value=0.14 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|+|.|++|+||||+|+.+++...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987653
No 339
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.90 E-value=0.69 Score=53.22 Aligned_cols=51 Identities=12% Similarity=0.058 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
..++.|.|.+|+||||+|.+++....... -..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 46899999999999999999998876431 1357777765 345566666543
No 340
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.90 E-value=0.13 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAK 202 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~ 202 (1209)
.+++|+|+.|.||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.85 E-value=0.16 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..|+|.|++|+||||+|+.+++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999988764
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.81 E-value=0.14 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|+|.|++|+||||+|+.+++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988764
No 343
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.70 E-value=0.15 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|+|+|+.|+||||+++.+++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997764
No 344
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.68 E-value=0.15 Score=51.83 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999997765
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.64 E-value=0.15 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|.|.|++|+||||+|+.++....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 346
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.63 E-value=0.15 Score=52.81 Aligned_cols=25 Identities=36% Similarity=0.598 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|+|+|+.|+||||+|+.++....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.61 E-value=0.16 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|.|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988764
No 348
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.61 E-value=0.15 Score=51.56 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
.+..+|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999875
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.55 E-value=0.18 Score=51.03 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|.|.|++|+||||+|+.++....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999999988764
No 350
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.48 E-value=0.14 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAK 202 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~ 202 (1209)
.+|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.48 E-value=0.16 Score=50.88 Aligned_cols=26 Identities=31% Similarity=0.326 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999987653
No 352
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.40 E-value=0.13 Score=51.38 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999987765
No 353
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.39 E-value=0.24 Score=49.24 Aligned_cols=108 Identities=16% Similarity=0.104 Sum_probs=53.7
Q ss_pred hcCCCCCcEEEecCc-ccc-----cccccccCCCCCcEEeccCcccCCc------ccccCCCCCCEEEccCCCCC-----
Q 038494 563 FEGTEDLKVLSLSGI-HFS-----SLSSSLGHLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRYSDIK----- 625 (1209)
Q Consensus 563 ~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~L~~L~l~~~~l~~l------~~i~~L~~L~~L~l~~~~~~----- 625 (1209)
+.+-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.+.+. ..+..-+.|++|+|++|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344455666666553 443 2333444455666666666665432 33334456666666666655
Q ss_pred ccchhccCCCCCCEEeccCCC--CCcccC----chhhcCCCCCcEEECCCC
Q 038494 626 QLPLEIGQLAQLQLLDLSNCS--SLVVIA----PNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 626 ~lp~~i~~L~~L~~L~l~~~~--~l~~~~----~~~l~~L~~L~~L~l~~~ 670 (1209)
.+-..+..-+.|++|+++++. .+.... ...+..=+.|..|+++.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 223334444567777776532 122110 112333456777776543
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=90.37 E-value=0.11 Score=51.56 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=18.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987654
No 355
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=90.35 E-value=0.17 Score=49.82 Aligned_cols=25 Identities=48% Similarity=0.619 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.++|+|+.|+|||||++.++....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987753
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.29 E-value=0.17 Score=50.57 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+|+|+|+.|+||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 357
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.29 E-value=1.2 Score=52.25 Aligned_cols=51 Identities=27% Similarity=0.210 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
..++.|.|.+|+||||+|.+++.....+. =..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHH
Confidence 46899999999999999999998876531 13577877644 45566665543
No 358
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.26 E-value=0.16 Score=51.74 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+|+|+|..|.|||||++.++....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988754
No 359
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.21 E-value=0.48 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.|+|.|..|+||||+|+.+++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 360
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.19 E-value=0.18 Score=51.81 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|.|.|++|+||||+|+.+++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999988764
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.10 E-value=0.18 Score=53.06 Aligned_cols=28 Identities=25% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
....+|+|.|+.|+||||+|+.++....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988654
No 362
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.08 E-value=0.18 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+|+|.|+.|+||||+|+.+++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987743
No 363
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.07 E-value=0.66 Score=61.36 Aligned_cols=86 Identities=17% Similarity=0.169 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCC-----CCCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFD-----LNDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 254 (1209)
..+|.|.|.+|+||||||.+++...... -..++|++........ .++.++.+.. ......+....+.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 4689999999999999999999887643 2367888877765543 2566664321 12232333333433
Q ss_pred HHhcCCeEEEEEeCCCcc
Q 038494 255 RLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv~~~ 272 (1209)
...+.+.-+||+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 333456679999998754
No 364
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.06 E-value=0.17 Score=51.36 Aligned_cols=24 Identities=46% Similarity=0.686 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
..+|+|+|.+|.||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998764
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.06 E-value=0.19 Score=51.29 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=26.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCE
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDK 212 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 212 (1209)
..+|+|.|+.|+||||+|+.+++.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999987754 23444
No 366
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.00 E-value=0.18 Score=49.21 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
++++|+|..|.|||||++.+..-...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999877653
No 367
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.99 E-value=0.14 Score=51.59 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987653
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.96 E-value=0.2 Score=51.25 Aligned_cols=27 Identities=19% Similarity=0.354 Sum_probs=24.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..+|+|.|+.|+||||+|+.+++....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988764
No 369
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.93 E-value=0.17 Score=60.92 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=40.4
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 155 AKDFEAFDSRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 155 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||+|+.++....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344667899988888888777655 4789999999999999999998664
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.92 E-value=0.28 Score=51.70 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|.|.|++|.||||+|+.++....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987653
No 371
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.86 E-value=0.7 Score=61.96 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLC 253 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 253 (1209)
...++.|+|.+|+||||||.+++...... -..++|++.....+... ++.++.+.+. .....+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34699999999999999999999887643 24688998887776542 5666654321 222233333333
Q ss_pred HHHhcCCeEEEEEeCCCcc
Q 038494 254 QRLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 254 ~~l~~~k~~LlvlDdv~~~ 272 (1209)
....+.+.-+||+|-+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 2233456679999998654
No 372
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.77 E-value=0.16 Score=49.72 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCChHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQI 200 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~ 200 (1209)
..+++|+|+.|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999964
No 373
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.77 E-value=0.3 Score=52.72 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhc
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMED 207 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~ 207 (1209)
+..+|+|+|++|+||||+++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 34699999999999999999999887653
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.75 E-value=0.2 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.|+|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987753
No 375
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.72 E-value=0.18 Score=57.22 Aligned_cols=47 Identities=30% Similarity=0.282 Sum_probs=35.7
Q ss_pred chhhHHHHHHHHHHHHhC--------------CCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 160 AFDSRMKLFQDVVEALRN--------------DKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 160 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 467877777777666531 12356889999999999999999988753
No 376
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.71 E-value=0.18 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAK 202 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~ 202 (1209)
.+|+|+|+.|.||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 377
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.69 E-value=0.21 Score=52.64 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+|+|+|+.|.||||+++.+++...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346999999999999999999987764
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.68 E-value=0.18 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...|.|.|++|+||||+|+.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998765
No 379
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.63 E-value=0.32 Score=48.10 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=59.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC---CcCHHHHHHHHH---HHhCCCCCCCC-C-------hH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE---NPDVQKIQDKLA---SDLDLNFDLND-S-------KP 246 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~---~~~~~~l~~~i~---~~l~~~~~~~~-~-------~~ 246 (1209)
..|.|++-.|.||||.|-..+-+..... -.+.++..-. ......+++.+. ...+....... . ..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4666777777999999999998876532 2455554433 223333333321 00011011110 0 01
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCccc-----CccccCCCCCCCCccccccccCCcEEEEeccchh
Q 038494 247 HRAKQLCQRLTKEKRVLIILDNIWKKL-----GLEEIGIPFGDVDEKDRKQDLRRRTIILTSRSKH 307 (1209)
Q Consensus 247 ~~~~~l~~~l~~~k~~LlvlDdv~~~~-----~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 307 (1209)
.....+.+.+.+++--|||||++-... ..+.+...+.... ....||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp--------~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP--------GHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC--------TTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc--------CCCEEEEECCCCc
Confidence 222344445545566799999985431 1122211111111 4667999999864
No 380
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.60 E-value=0.22 Score=47.88 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
....+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445699999999999999999999876
No 381
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.56 E-value=0.43 Score=47.41 Aligned_cols=81 Identities=12% Similarity=0.070 Sum_probs=42.1
Q ss_pred cCCCCCcEEEecCcccc-----cccccccCCCCCcEEeccCcccCCc------ccccCCCCCCEEEccCCCC---C----
Q 038494 564 EGTEDLKVLSLSGIHFS-----SLSSSLGHLINLQTLCLDWCQLEDV------AAIGQLKKLEILSFRYSDI---K---- 625 (1209)
Q Consensus 564 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~L~~L~l~~~~l~~l------~~i~~L~~L~~L~l~~~~~---~---- 625 (1209)
..-+.|+.|+|++|.+. .|-+.+..-+.|++|+|++|.|..- ..+..-+.|++|+++++.. .
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 44556666666666664 2334444555666666666665432 3344444566666654322 2
Q ss_pred -ccchhccCCCCCCEEeccC
Q 038494 626 -QLPLEIGQLAQLQLLDLSN 644 (1209)
Q Consensus 626 -~lp~~i~~L~~L~~L~l~~ 644 (1209)
.+...+..-+.|..|+++.
T Consensus 147 ~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 147 MDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHhCCCcCeEeccC
Confidence 1222333445566666654
No 382
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=89.49 E-value=0.37 Score=49.09 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
....+|.|.|+.|+||||+|+.++....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4457899999999999999999998775
No 383
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=89.44 E-value=0.2 Score=50.92 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998765
No 384
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.38 E-value=0.2 Score=51.65 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|.|.|++|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999988764
No 385
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.34 E-value=0.65 Score=50.19 Aligned_cols=49 Identities=33% Similarity=0.365 Sum_probs=34.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCC-EEEEEEcCCCcCHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFD-KVVMAEVTENPDVQKIQDKL 231 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~l~~~i 231 (1209)
...+++|.|.+|+|||||++.++...... -+ .++|+.... ...++.+.+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~ 83 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDL 83 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHH
Confidence 34699999999999999999999887653 22 466776543 334444333
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.31 E-value=0.13 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.654 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
+|+|.|..|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999988754
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.24 E-value=0.22 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 388
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.15 E-value=1.3 Score=50.80 Aligned_cols=98 Identities=15% Similarity=0.155 Sum_probs=58.6
Q ss_pred HHHHHh-CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcC-HHHHHHHHHH----HhCCC------
Q 038494 171 VVEALR-NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPD-VQKIQDKLAS----DLDLN------ 238 (1209)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~l~~~i~~----~l~~~------ 238 (1209)
.++.+. =.+...++|.|.+|+|||+|++++++... -+.++++-+.+... +.++++.+-+ ..+..
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~~el~d~~~g~~~m~rtv 292 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTV 292 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHTTTCEETTTTEEGGGGEE
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHHhcccccccccccceE
Confidence 445554 23446889999999999999999876532 35788888887654 5555555422 11100
Q ss_pred ---CCCCCChHH------HHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 239 ---FDLNDSKPH------RAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 239 ---~~~~~~~~~------~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
......... ..-.+-+++. +++.+||++||+..-
T Consensus 293 vV~~tsd~p~~~r~~~~~~a~tiAEyfrd~G~dVLl~~DsltR~ 336 (588)
T 3mfy_A 293 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRW 336 (588)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTTC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecchHHH
Confidence 011111111 1123444454 479999999999754
No 389
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.12 E-value=0.18 Score=51.68 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 390
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.10 E-value=0.69 Score=53.58 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE
Q 038494 163 SRMKLFQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE 217 (1209)
Q Consensus 163 gR~~~~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 217 (1209)
+..+.+..+.+++.+++ +.+.|.|.+|+|||+++..++........ ..++.+.
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a 81 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAA 81 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEE
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEec
Confidence 45556666777776544 48999999999999999999988765422 2344443
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.07 E-value=0.23 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...|+|.|+.|+||||+++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.06 E-value=0.27 Score=48.49 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..+|+|.|+.|.||||+++.++.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999887643
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.00 E-value=0.41 Score=46.74 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.++++|+|..|+||||++..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987653
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.97 E-value=0.22 Score=52.09 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|+|+|+.|.||||+++.++....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 395
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.93 E-value=0.81 Score=49.78 Aligned_cols=39 Identities=36% Similarity=0.427 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcC
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVT 219 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s 219 (1209)
...+|+|+|.+|+||||++..++...... -..+.++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 35699999999999999999999877653 2345556543
No 396
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.89 E-value=0.24 Score=53.84 Aligned_cols=43 Identities=23% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
....+|+|.|..|.|||||++.++.-......-..+.++....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 4457999999999999999999988765421112356666543
No 397
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.87 E-value=0.86 Score=60.33 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=63.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCC-----CCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDL-----NDSKPHRAKQLCQ 254 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 254 (1209)
.++|-|+|+.|.||||||.++....... =+.++|+++.+..+... ++.+|.+.+. .+..+..+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 4789999999999999999999776543 35789999988888764 7888877543 2222444444555
Q ss_pred HHhcCCeEEEEEeCCCcc
Q 038494 255 RLTKEKRVLIILDNIWKK 272 (1209)
Q Consensus 255 ~l~~~k~~LlvlDdv~~~ 272 (1209)
.+..+..-+||+|-|...
T Consensus 1504 ~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHcCCCCEEEEccHHhC
Confidence 555677889999988543
No 398
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.85 E-value=0.26 Score=50.71 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+|+|.|++|.||||+|+.+++...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999988764
No 399
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=88.83 E-value=0.23 Score=50.76 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356999999999999999999987654
No 400
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.82 E-value=0.26 Score=51.60 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
....+|+|.|..|.||||+++.++...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999998765
No 401
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.76 E-value=0.58 Score=52.05 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=30.3
Q ss_pred HHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 168 FQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 168 ~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...+.+.+. .....+|+|+|.+|+||||++..++.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 445555554 456789999999999999999999887654
No 402
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.74 E-value=0.62 Score=42.98 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=37.0
Q ss_pred EEEccCCCCC--ccchhccCCCCCCEEeccCCCCCcccCchhhcCCCCCcEEECCCC
Q 038494 616 ILSFRYSDIK--QLPLEIGQLAQLQLLDLSNCSSLVVIAPNVISKFSRLEELYMGDS 670 (1209)
Q Consensus 616 ~L~l~~~~~~--~lp~~i~~L~~L~~L~l~~~~~l~~~~~~~l~~L~~L~~L~l~~~ 670 (1209)
.++.+++.++ .+|..+ -.+|++|++++ +.++.++.+.+..+++|+.|++.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCC
Confidence 5666666776 777543 24677888887 6777777777777778888877765
No 403
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.66 E-value=0.75 Score=47.40 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEE
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAE 217 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~ 217 (1209)
...|+|.|+.|+||||+++.+++..... .+..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeeec
Confidence 4689999999999999999999988753 455344443
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=88.61 E-value=0.28 Score=49.59 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+|.|.|++|+||||.|+.+++...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999998764
No 405
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.55 E-value=0.52 Score=51.26 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCC
Q 038494 177 NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTEN 221 (1209)
Q Consensus 177 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~ 221 (1209)
....++|+|+|-||+||||+|..++....... ..+.-|++...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 44678999999999999999999998887542 25666776543
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.45 E-value=0.81 Score=46.40 Aligned_cols=52 Identities=17% Similarity=0.235 Sum_probs=34.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
..|+|.|..|+||||+++.+++..... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 589999999999999999999988754 3433344433333334455555554
No 407
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.44 E-value=0.27 Score=53.48 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+|+|.|++|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999988653
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.38 E-value=0.25 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..|.|.|++|+||||+|+.+++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988763
No 409
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.31 E-value=0.28 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
++|.|+|+.|+||||+|+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998765
No 410
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.30 E-value=0.88 Score=51.88 Aligned_cols=102 Identities=19% Similarity=0.222 Sum_probs=58.2
Q ss_pred HHHHHh-CCCceEEEEEcCCCChHHHHHH-HHHHHHhh----cccCC-EEEEEEcCCCc-CHHHHHHHHHHHhCCC----
Q 038494 171 VVEALR-NDKLNIIGVHGMGGVGKTTLVK-QIAKQVME----DKVFD-KVVMAEVTENP-DVQKIQDKLASDLDLN---- 238 (1209)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~-~~~~~~~~----~~~f~-~~~wv~~s~~~-~~~~l~~~i~~~l~~~---- 238 (1209)
.++.+. =.+...+.|+|.+|+|||+||. .+++.... .++-+ .++++-+.+.. .+.++.+.+...-...
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 344443 2334578999999999999965 55555442 12234 46778887765 4566666665421111
Q ss_pred --CCCCCChHH------HHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 239 --FDLNDSKPH------RAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 239 --~~~~~~~~~------~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
......... ..-.+-+++. +++..||++||+...
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 011111111 1123445554 479999999998754
No 411
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.16 E-value=0.45 Score=51.32 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..+++|+|+.|+||||+++.++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999999999988764
No 412
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.14 E-value=0.29 Score=50.34 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998775
No 413
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.12 E-value=0.49 Score=53.20 Aligned_cols=93 Identities=22% Similarity=0.205 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc-ccCC-EEEEEEcCCCc-CHHHHHHHHHHHhCCC------CCCCCCh-----
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED-KVFD-KVVMAEVTENP-DVQKIQDKLASDLDLN------FDLNDSK----- 245 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~-~~f~-~~~wv~~s~~~-~~~~l~~~i~~~l~~~------~~~~~~~----- 245 (1209)
...+.|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. .+.++++.+...-... ...+...
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 3467899999999999999998876542 1122 56777777654 4566666654431110 0111111
Q ss_pred -HHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 246 -PHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 -~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++.+||++||+..-
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslTr~ 260 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMTNY 260 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 112234666666 389999999998754
No 414
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.11 E-value=0.3 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.++|+|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 415
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.11 E-value=0.27 Score=48.91 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
.+++|+|..|+||||+++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 416
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.10 E-value=1.3 Score=50.82 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=35.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLA 232 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~ 232 (1209)
..++.|.|.+|+||||+|.+++.....+ =..++|++.... ..++...+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC--TTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC--HHHHHHHHH
Confidence 4689999999999999999999887654 236777765433 334444433
No 417
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.08 E-value=0.29 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.05 E-value=0.32 Score=49.88 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAK 202 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~ 202 (1209)
..+|+|.|+.|.||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 419
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=87.96 E-value=0.38 Score=54.48 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=58.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhhccc--CCEEEEEEcCCCc-CHHHHHHHHHHHhCCC------CCCCCCh----
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVMEDKV--FDKVVMAEVTENP-DVQKIQDKLASDLDLN------FDLNDSK---- 245 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~s~~~-~~~~l~~~i~~~l~~~------~~~~~~~---- 245 (1209)
+...++|.|.+|+|||+|+.++++.....+. =+.++++-+.+.. .+.++++.+...-... ...+...
T Consensus 151 rGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~ 230 (469)
T 2c61_A 151 RGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERI 230 (469)
T ss_dssp TTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHH
Confidence 3456789999999999999999988764221 1356677776654 4566666665432111 0111111
Q ss_pred --HHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 246 --PHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 246 --~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
....-.+-+++. +++.+|+++||+..-
T Consensus 231 ~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~ 261 (469)
T 2c61_A 231 VTPRMALTAAEYLAYEHGMHVLVILTDITNY 261 (469)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 112234555665 489999999998654
No 420
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.95 E-value=0.31 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
++|+|.|+.|+||||+|+.++....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988764
No 421
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.90 E-value=0.35 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.194 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|.|.|+.|+||||+|+.+++...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.81 E-value=0.29 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..++|+|+|+.|+||||||..+++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998754
No 423
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.80 E-value=0.84 Score=46.49 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.....|+|.|..|+||||+++.+++....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44578999999999999999999988865
No 424
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.71 E-value=0.31 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.785 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIA 201 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~ 201 (1209)
..+|+|.|+.|+||||+|+.+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.59 E-value=0.59 Score=48.18 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
....|+|.|+.|+||||+++.+++....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999988864
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.52 E-value=0.34 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.++|.|.|+.|+||||||..+++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 427
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.51 E-value=0.63 Score=50.55 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
....+|+|+|..|.|||||++.+.........-+.+.+++...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 3457999999999999999999987654100012355665544
No 428
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.91 E-value=2.3 Score=59.38 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=76.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHhcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLASDLDLNFDLNDSKPHRAKQLCQRLTKEK 260 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 260 (1209)
+-|.++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+...+......... +..--..++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 4678999999999999987765431 12 456678888778877777766655322100000 000000267
Q ss_pred eEEEEEeCCCcc--cCc------cccCCCCCCCCcccc----ccccCCcEEEEeccchh------hhcccCCcceEEEcC
Q 038494 261 RVLIILDNIWKK--LGL------EEIGIPFGDVDEKDR----KQDLRRRTIILTSRSKH------LLTNDMNSQKIFLIE 322 (1209)
Q Consensus 261 ~~LlvlDdv~~~--~~~------~~l~~~~~~~~~~~~----~~~~~~s~ilvTtR~~~------v~~~~~~~~~~~~l~ 322 (1209)
+.++.+||+.-. +.| +.+...+..++...+ .....+..+|.++-... +.........++.++
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Confidence 899999997543 111 001100000000000 00002233444443221 111112344688999
Q ss_pred CCCHHHHHHHHHHHh
Q 038494 323 VLSKEEALQFFEKIV 337 (1209)
Q Consensus 323 ~L~~~e~~~lf~~~~ 337 (1209)
..+.++-..+|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999988888887765
No 429
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=86.84 E-value=0.36 Score=50.12 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.. .+++|+|+.|.|||||.+.++--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 789999999999999999986543
No 430
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=86.84 E-value=0.25 Score=51.22 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=16.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHH-HHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIA-KQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~-~~~ 204 (1209)
..+++|+|+.|+||||+++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 554
No 431
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.82 E-value=0.59 Score=51.54 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
..+++|+|..|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 469999999999999999999988764
No 432
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.56 E-value=0.48 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999999998776
No 433
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.54 E-value=0.29 Score=49.50 Aligned_cols=24 Identities=38% Similarity=0.261 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
..+++|+|+.|.|||||++.++--
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999876
No 434
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=86.53 E-value=0.34 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+++|+|+.|.|||||.+.++--.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999886543
No 435
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=86.49 E-value=1 Score=50.54 Aligned_cols=93 Identities=19% Similarity=0.209 Sum_probs=56.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhc--------ccCC-EEEEEEcCCCc-CHHHHHHHHHHHhCC-------CCCCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMED--------KVFD-KVVMAEVTENP-DVQKIQDKLASDLDL-------NFDLN 242 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~l~~~i~~~l~~-------~~~~~ 242 (1209)
...+.|.|.+|+|||+|+.++++..... ++-+ .++++-+.+.. .+.++.+.+...-.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 4567899999999999999998876541 1222 56677777654 455666655432100 01111
Q ss_pred CCh-----HHHHHHHHHHHh--cCCeEEEEEeCCCcc
Q 038494 243 DSK-----PHRAKQLCQRLT--KEKRVLIILDNIWKK 272 (1209)
Q Consensus 243 ~~~-----~~~~~~l~~~l~--~~k~~LlvlDdv~~~ 272 (1209)
+.. ....-.+-+++. +++.+||++||+..-
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~ 263 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNY 263 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHH
Confidence 111 112234566666 379999999998754
No 436
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.41 E-value=1.3 Score=44.82 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCE
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDK 212 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~ 212 (1209)
...|+|.|+.|+||||+++.+++..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 4689999999999999999999888753 3444
No 437
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=86.40 E-value=1 Score=45.64 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=27.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
.|.+.|.||+||||+|..++.....+. + .+..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCC
Confidence 478999999999999999998887542 3 344455544
No 438
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=86.40 E-value=0.91 Score=49.96 Aligned_cols=47 Identities=30% Similarity=0.430 Sum_probs=34.8
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHHHHh--hcccCCEEEEEEcCCCcCHH
Q 038494 177 NDKLNIIGVHGMGGVGKTTLVKQIAKQVM--EDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 177 ~~~~~vi~I~G~~GiGKTtLa~~~~~~~~--~~~~f~~~~wv~~s~~~~~~ 225 (1209)
+...+++.+.|-||+||||+|..++.... .. =..+.-++.....+..
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l~ 63 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNLS 63 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCChH
Confidence 45568999999999999999999998876 32 2356667766544433
No 439
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.17 E-value=0.73 Score=48.06 Aligned_cols=38 Identities=26% Similarity=0.246 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCC--CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 167 LFQDVVEALRND--KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 167 ~~~~l~~~L~~~--~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
....+..|+... +...|.++|++|+|||.+|..+++..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 345577777643 34579999999999999999998864
No 440
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=86.14 E-value=1.5 Score=50.59 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHHHh-CCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCc-CHHHHHHHHHH----HhCCCC-----
Q 038494 171 VVEALR-NDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENP-DVQKIQDKLAS----DLDLNF----- 239 (1209)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~l~~~i~~----~l~~~~----- 239 (1209)
.++.|. =.+...++|.|.+|+|||+|+.++++... -+.++++-+.+.. .+.++++.+-+ ..+...
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~~el~d~~~G~~~m~rtv 297 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEFPELIDPNTGESLMERTV 297 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHTTTCBCTTTCSBGGGGEE
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHHHhhcccccccccccceE
Confidence 445554 23456889999999999999999987643 3567888887763 34444444321 111110
Q ss_pred ----CCCCChHH------HHHHHHHHHh-cCCeEEEEEeCCCc
Q 038494 240 ----DLNDSKPH------RAKQLCQRLT-KEKRVLIILDNIWK 271 (1209)
Q Consensus 240 ----~~~~~~~~------~~~~l~~~l~-~~k~~LlvlDdv~~ 271 (1209)
........ ..-.+-+++. +++.+||++|++..
T Consensus 298 vV~~tsd~p~~~R~~~~~~altiAEyfrd~G~dVLl~~Ds~tR 340 (600)
T 3vr4_A 298 LIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSR 340 (600)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHH
Confidence 01111111 1123445554 47899999999863
No 441
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.13 E-value=0.25 Score=53.04 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=20.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
+..+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988654
No 442
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.02 E-value=0.76 Score=48.36 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
....+++|+|+.|.||||+++.+......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 34579999999999999999999876543
No 443
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.93 E-value=0.32 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.+.|.|.|.+|+||||||.+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998654
No 444
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.85 E-value=1.1 Score=49.16 Aligned_cols=48 Identities=29% Similarity=0.323 Sum_probs=35.7
Q ss_pred hCCCceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHH
Q 038494 176 RNDKLNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQ 225 (1209)
Q Consensus 176 ~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 225 (1209)
.+...+++.+.|-||+||||+|..++...... =..+.-|+.....+..
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~ 59 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLS 59 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChh
Confidence 34556788999999999999999999888753 2356777776554433
No 445
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=85.80 E-value=0.39 Score=49.79 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+++|+|..|.|||||++.++.-..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346899999999999999999976543
No 446
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.78 E-value=0.43 Score=51.80 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
.+|.|.|++|+||||+|+.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 447
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=85.75 E-value=3.5 Score=46.78 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCChHHHHHH-HHHHHHhhcccCC-EEEEEEcCCCc-CHHHHHHHHHHHhCCCC------CCCCChH---
Q 038494 179 KLNIIGVHGMGGVGKTTLVK-QIAKQVMEDKVFD-KVVMAEVTENP-DVQKIQDKLASDLDLNF------DLNDSKP--- 246 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~-~~~~~~~~~~~f~-~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~~~~~~~--- 246 (1209)
+...+.|.|..|+|||+||. .+++. + +-+ .++++-+.+.. .+.++.+.+.+.-.... .......
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~-~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ-R---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT-S---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh-c---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 34578999999999999974 55543 2 233 46788888765 45666666544321110 1111111
Q ss_pred ---HHHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 247 ---HRAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 247 ---~~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
...-.+-+++. +++..||++||+...
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 11123444444 479999999998654
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=85.60 E-value=0.37 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|.|||||.+.++--.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999886443
No 449
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=85.47 E-value=0.45 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998654
No 450
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.47 E-value=0.49 Score=52.53 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999988764
No 451
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.43 E-value=0.41 Score=50.50 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+++|+|+.|.|||||.+.++--.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999986543
No 452
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.38 E-value=0.5 Score=50.75 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.+..+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445799999999999999999998766
No 453
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=85.23 E-value=0.61 Score=53.95 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHh--CCCceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 163 SRMKLFQDVVEALR--NDKLNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 163 gR~~~~~~l~~~L~--~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.|.+..+.+.+... .....+|.+.|++|.||||+|+.+++....
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 44444555555442 234578999999999999999999999864
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.12 E-value=0.59 Score=48.51 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+|+|.|+.|.||||+++.++....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999987653
No 455
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.10 E-value=0.55 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 456
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.04 E-value=0.51 Score=49.93 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
...+++|+|..|.|||||.+.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999764
No 457
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=84.98 E-value=0.45 Score=50.14 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+++|+|+.|.|||||.+.++--.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44689999999999999999986543
No 458
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=84.81 E-value=0.54 Score=45.53 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAK 202 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~ 202 (1209)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 459
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=84.79 E-value=1.7 Score=43.45 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=32.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKIQDKLAS 233 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l~~~i~~ 233 (1209)
.|+|-|.-|+||||.++.+++..+.+. . .+.+..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhh
Confidence 478999999999999999999887642 2 3344433333334444444443
No 460
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=84.76 E-value=0.48 Score=49.36 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+++|+|..|.|||||.+.++--.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999986543
No 461
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=84.71 E-value=0.42 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|.|||||++.++--.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999986543
No 462
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.70 E-value=0.52 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
..+++|+|..|.|||||.+.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999764
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.58 E-value=0.47 Score=50.80 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..++.|+|.+|+|||||+..++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987554
No 464
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=84.51 E-value=1.1 Score=49.84 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
....+++|+|++|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999754
No 465
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=84.50 E-value=0.42 Score=47.37 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAK 202 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~ 202 (1209)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999875
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.48 E-value=0.6 Score=48.65 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...|+|.|..|+||||+++.+++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999988763
No 467
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=84.41 E-value=1.3 Score=50.30 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=56.7
Q ss_pred HHHHHh-CCCceEEEEEcCCCChHHHHHH-HHHHHHhhcccCC-EEEEEEcCCCc-CHHHHHHHHHHHhCCC------CC
Q 038494 171 VVEALR-NDKLNIIGVHGMGGVGKTTLVK-QIAKQVMEDKVFD-KVVMAEVTENP-DVQKIQDKLASDLDLN------FD 240 (1209)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~-~~~~~~~~~~~f~-~~~wv~~s~~~-~~~~l~~~i~~~l~~~------~~ 240 (1209)
.++.+. =.+...+.|+|.+|+|||+||. .+++... .+ .++++-+.+.. .+.++.+.+...-... ..
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~at 240 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVAS 240 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEEC
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEEC
Confidence 344443 1334578999999999999965 5555432 45 35777777664 4566666665421111 11
Q ss_pred CCCChHH------HHHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 241 LNDSKPH------RAKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 241 ~~~~~~~------~~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
....... ..-.+-+++. +++..||++||+...
T Consensus 241 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 241 ASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 1111111 1223445554 479999999998754
No 468
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=84.31 E-value=0.57 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
..|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 469
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=84.29 E-value=0.58 Score=47.24 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 168 FQDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 168 ~~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.+.+.+.....+.-.|+|+|.+|+|||||...+.+..
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3344343334445678999999999999998887543
No 470
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.26 E-value=0.5 Score=49.54 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+++|+|+.|.|||||.+.++--.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999986543
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.24 E-value=0.51 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
...+++|+|+.|.|||||.+.++.-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3468999999999999999998754
No 472
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=84.23 E-value=0.46 Score=49.39 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|.|||||.+.++--.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999986543
No 473
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=84.19 E-value=0.75 Score=45.48 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.++.|+|..|+||||++..++++...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999888877654
No 474
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.15 E-value=0.98 Score=44.90 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458899999999999999998764
No 475
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=84.14 E-value=0.51 Score=50.03 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
...+++|+|..|.|||||.+.++--.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987544
No 476
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=84.13 E-value=0.5 Score=48.74 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+++|+|+.|.|||||.+.++.-..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45899999999999999999976543
No 477
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=84.07 E-value=0.5 Score=49.33 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|..|.|||||.+.++--.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999986544
No 478
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=84.06 E-value=0.49 Score=49.99 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|.|||||++.++--.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987544
No 479
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=84.06 E-value=0.67 Score=49.21 Aligned_cols=38 Identities=16% Similarity=0.385 Sum_probs=29.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
++|+|.|-||+||||+|..++.....+. ..+.-|+...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCC
Confidence 5788899999999999999998887432 2566676653
No 480
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=84.03 E-value=0.43 Score=48.47 Aligned_cols=25 Identities=44% Similarity=0.740 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|.|||||.+.++--.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999986543
No 481
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.86 E-value=0.44 Score=54.26 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 178 DKLNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 178 ~~~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
....+|.|+|++|.||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345799999999999999999987654
No 482
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=83.85 E-value=0.48 Score=49.83 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|.|||||.+.++--.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999986543
No 483
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.59 E-value=1 Score=44.60 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=25.8
Q ss_pred HHHHHHHhCCCceEEEEEcCCCChHHHHHHHHHHH
Q 038494 169 QDVVEALRNDKLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 169 ~~l~~~L~~~~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
..+.+ +.......|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34445 33455668899999999999999998753
No 484
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=83.58 E-value=0.56 Score=49.63 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
...+++|+|..|.|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3468999999999999999998654
No 485
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=83.32 E-value=1.5 Score=44.74 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
...|+|-|+.|+||||+++.+++....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988865
No 486
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=83.19 E-value=0.62 Score=44.79 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 487
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=83.13 E-value=0.57 Score=48.86 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
..+++|+|+.|.|||||.+.++--..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45899999999999999999865443
No 488
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=83.12 E-value=0.65 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
-.|+|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 489
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=83.07 E-value=1.5 Score=44.27 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=31.8
Q ss_pred EEEE-EcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHHH
Q 038494 182 IIGV-HGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQKI 227 (1209)
Q Consensus 182 vi~I-~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~l 227 (1209)
+|+| -+-||+||||+|..++.....+. .+.-++.....+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 5666 47899999999999998887542 6777887765544433
No 490
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=82.99 E-value=0.48 Score=53.89 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEc
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEV 218 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 218 (1209)
..+|+|+|.+|+||||+|..++.....+. ..+..++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G--~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG--LKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH--CCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEec
Confidence 35899999999999999999998776432 23455544
No 491
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=82.91 E-value=2.4 Score=48.18 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=56.9
Q ss_pred HHHHHh-CCCceEEEEEcCCCChHHHHHH-HHHHHHhhcccCC-EEEEEEcCCCc-CHHHHHHHHHHHhCCCC------C
Q 038494 171 VVEALR-NDKLNIIGVHGMGGVGKTTLVK-QIAKQVMEDKVFD-KVVMAEVTENP-DVQKIQDKLASDLDLNF------D 240 (1209)
Q Consensus 171 l~~~L~-~~~~~vi~I~G~~GiGKTtLa~-~~~~~~~~~~~f~-~~~wv~~s~~~-~~~~l~~~i~~~l~~~~------~ 240 (1209)
.++.+. =.+...+.|+|.+|+|||+||. .+++... -+ .++++-+.+.. .+.++.+.+...-.... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~at 227 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTAS 227 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEEC
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEEC
Confidence 344443 2334578999999999999965 5555431 45 35777777665 45666666654321111 1
Q ss_pred CCCChHHH------HHHHHHHHh-cCCeEEEEEeCCCcc
Q 038494 241 LNDSKPHR------AKQLCQRLT-KEKRVLIILDNIWKK 272 (1209)
Q Consensus 241 ~~~~~~~~------~~~l~~~l~-~~k~~LlvlDdv~~~ 272 (1209)
........ .-.+-+++. +++..||++||+...
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 228 ASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 11111111 123445554 479999999998754
No 492
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=82.76 E-value=0.6 Score=48.89 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHH
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
..+++|+|+.|.|||||.+.++--.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999987544
No 493
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=82.74 E-value=0.81 Score=49.21 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCC
Q 038494 180 LNIIGVHGMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTE 220 (1209)
Q Consensus 180 ~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~ 220 (1209)
.++|+|.|-||+||||+|..++.....+. ..+.-|+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 36788899999999999999998886532 2466666654
No 494
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=82.68 E-value=0.73 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 038494 182 IIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 182 vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
-|+|+|.+|+|||||...+....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997654
No 495
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=82.62 E-value=0.68 Score=45.95 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQV 204 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~ 204 (1209)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998653
No 496
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=82.61 E-value=1.4 Score=44.31 Aligned_cols=44 Identities=23% Similarity=0.306 Sum_probs=32.1
Q ss_pred eEEEEE-cCCCChHHHHHHHHHHHHhhcccCCEEEEEEcCCCcCHHH
Q 038494 181 NIIGVH-GMGGVGKTTLVKQIAKQVMEDKVFDKVVMAEVTENPDVQK 226 (1209)
Q Consensus 181 ~vi~I~-G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~s~~~~~~~ 226 (1209)
++|+|+ +-||+||||+|..++.....+ =..+.-++.....+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHHH
Confidence 578887 678899999999999888753 23567777765544433
No 497
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=82.60 E-value=0.58 Score=49.82 Aligned_cols=27 Identities=30% Similarity=0.301 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHHHh
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQVM 205 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~~~ 205 (1209)
...+++|+|+.|.|||||.+.++--..
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345899999999999999999875443
No 498
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.55 E-value=0.77 Score=45.45 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999864
No 499
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=82.51 E-value=0.76 Score=46.20 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=23.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhh
Q 038494 181 NIIGVHGMGGVGKTTLVKQIAKQVME 206 (1209)
Q Consensus 181 ~vi~I~G~~GiGKTtLa~~~~~~~~~ 206 (1209)
.+|+|.|+.|+||||+|+.+++....
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998753
No 500
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.43 E-value=0.53 Score=48.67 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHHH
Q 038494 179 KLNIIGVHGMGGVGKTTLVKQIAKQ 203 (1209)
Q Consensus 179 ~~~vi~I~G~~GiGKTtLa~~~~~~ 203 (1209)
...+|+|.|..|.||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3569999999999999999998664
Done!