BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038498
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 298 bits (763), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 144/238 (60%), Positives = 182/238 (76%), Gaps = 2/238 (0%)
Query: 9 LALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYV 68
L LFDVDGTLTAPR+ T + +F+++LR+ + +GVVGGSD K+ EQLG V+++YDYV
Sbjct: 8 LCLFDVDGTLTAPRQKITKEXDDFLQKLRQKIKIGVVGGSDFEKVQEQLGNDVVEKYDYV 67
Query: 69 FSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGML 128
F ENGLVA+KDGKL+ Q+++S LG +++ IN+ L YIA + +P KRGTFIEFR+G L
Sbjct: 68 FPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRNGXL 127
Query: 129 NISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQGW 188
N+SPIGR+CSQEER EF DK NIR K V+ LR++FA LTFSIGGQISFDVFP GW
Sbjct: 128 NVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQISFDVFPDGW 187
Query: 189 DKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 244
DK YCLR++ D + I+FFGDKT GGNDHEIF RT G++VT+PEDT C+ LF
Sbjct: 188 DKRYCLRHVENDGYKTIYFFGDKTXPGGNDHEIFTDPRTXGYSVTAPEDTRRICELLF 245
>pdb|2I54|A Chain A, Phosphomannomutase From Leishmania Mexicana
pdb|2I54|B Chain B, Phosphomannomutase From Leishmania Mexicana
pdb|2I54|C Chain C, Phosphomannomutase From Leishmania Mexicana
pdb|2I55|A Chain A, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
pdb|2I55|B Chain B, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
pdb|2I55|C Chain C, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
Length = 247
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 177/238 (74%), Gaps = 2/238 (0%)
Query: 9 LALFDVDGTLTAPRKAATPQMLEFMRELRKV-VTVGVVGGSDLSKISEQLGKTVIDEYDY 67
+ LFDVDGTLT PR T M E + + R +GVVGGSD +K EQLG+++++++DY
Sbjct: 6 ILLFDVDGTLTPPRNPETHDMKEALLKARAAGFKLGVVGGSDFAKQKEQLGESILEDFDY 65
Query: 68 VFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSGM 127
VFSENGL+A+KDGK SL LG EK+ F+ LH IADLDIP++RGTF+EFR+GM
Sbjct: 66 VFSENGLLAYKDGKEFHRNSLLRALGNEKVVAFVKKCLHLIADLDIPVQRGTFVEFRNGM 125
Query: 128 LNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQG 187
N+SPIGRNCSQ+ERDEFE DK +IR K++ L+E F L +S+GGQISFDVFP+G
Sbjct: 126 FNVSPIGRNCSQQERDEFENLDKERHIREKLIRELKEAFPDYQLAYSVGGQISFDVFPKG 185
Query: 188 WDKTYCLRYL-DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALF 244
WDKTYCL+++ +DF IHFFGDKT +GGND+EIF RT+GH+V + +DT+ +AL
Sbjct: 186 WDKTYCLQFVENDFETIHFFGDKTSEGGNDYEIFTDSRTIGHSVKTYKDTIAILEALL 243
>pdb|3F9R|A Chain A, Crystal Structure Of Trypanosoma Brucei
Phosphomannosemutase, Tb.10.700.370
pdb|3F9R|B Chain B, Crystal Structure Of Trypanosoma Brucei
Phosphomannosemutase, Tb.10.700.370
Length = 246
Score = 280 bits (716), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 133/242 (54%), Positives = 178/242 (73%), Gaps = 2/242 (0%)
Query: 8 LLALFDVDGTLTAPRKAATPQMLEFMRELRKV-VTVGVVGGSDLSKISEQLGKTVIDEYD 66
+L LFDVDGTLT PR T +M ++ R VG VGGSD +K EQLG+ V+ ++D
Sbjct: 5 VLLLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGGSDFAKQVEQLGRDVLTQFD 64
Query: 67 YVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGTFIEFRSG 126
YVF+ENGL+A+++G I QSL + LG +++ +F+ TL IADLDIP++RGTF+E+R+G
Sbjct: 65 YVFAENGLLAYRNGLEIHRQSLLNALGNDRIVKFVKKTLRLIADLDIPVQRGTFVEYRNG 124
Query: 127 MLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQISFDVFPQ 186
M+N+SPIGRNCSQ ERDEFE YD H +R +++ L F L +SIGGQISFDVFP
Sbjct: 125 MINVSPIGRNCSQAERDEFEVYDNEHRVRASLIAELENSFPDFGLKYSIGGQISFDVFPV 184
Query: 187 GWDKTYCLRYL-DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTMEKCKALFL 245
GWDKTYCL+++ DDF EIHFFGDKT +GGND+EI+ +RT+GH VTS +DT+ + + +
Sbjct: 185 GWDKTYCLQFVEDDFEEIHFFGDKTQEGGNDYEIYTDKRTIGHKVTSYKDTIAEVEKIIA 244
Query: 246 AK 247
K
Sbjct: 245 MK 246
>pdb|2FUC|A Chain A, Human Alpha-Phosphomannomutase 1 With Mg2+ Cofactor Bound
pdb|2FUE|A Chain A, Human Alpha-Phosphomannomutase 1 With D-Mannose
1-Phosphate And Mg2+ Cofactor Bound
Length = 262
Score = 277 bits (709), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 138/250 (55%), Positives = 179/250 (71%), Gaps = 4/250 (1%)
Query: 2 AARKQGLLALFDVDGTLTAPRKAATPQMLEFMRELRKVVTVGVVGGSDLSKISEQLGK-- 59
A RK+ +L LFDVDGTLT R+ P++ F+++LR V +GVVGGSD KI+EQLG
Sbjct: 8 ARRKERVLCLFDVDGTLTPARQKIDPEVAAFLQKLRSRVQIGVVGGSDYCKIAEQLGDGD 67
Query: 60 TVIDEYDYVFSENGLVAHKDGKLIGTQSLKSFLGGEKLKEFINFTLHYIADLDIPIKRGT 119
VI+++DYVF+ENG V +K G+L+ Q++++ LG E L++ INF L Y A L +P KRGT
Sbjct: 68 EVIEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYXALLRLPKKRGT 127
Query: 120 FIEFRSGMLNISPIGRNCSQEERDEFERYDKIHNIRPKMVSVLREKFAHLNLTFSIGGQI 179
FIEFR+G LNISPIGR+C+ EER EF DK IR K V L+ +FA L FS GG I
Sbjct: 128 FIEFRNGXLNISPIGRSCTLEERIEFSELDKKEKIREKFVEALKTEFAGKGLRFSRGGXI 187
Query: 180 SFDVFPQGWDKTYCLRYL--DDFNEIHFFGDKTYKGGNDHEIFESERTVGHTVTSPEDTM 237
SFDVFP+GWDK YCL L D F+ IHFFG++T GGND EIF RTVGH+V SP+DT+
Sbjct: 188 SFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSPQDTV 247
Query: 238 EKCKALFLAK 247
++C+ +F +
Sbjct: 248 QRCREIFFPE 257
>pdb|3SD7|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Putative
Phosphatase From Clostridium Difficile
Length = 240
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 2 AARKQGLLALFDVDGTLTAPRKAATPQM 29
A +K + LFD+DGTLT P++ T +
Sbjct: 24 AMKKNYEIVLFDLDGTLTDPKEGITKSI 51
>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
pdb|1WQG|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
pdb|1WQH|A Chain A, Crystal Structure Of Ribosome Recycling Factor From
Mycobacterium Tuberculosis
Length = 185
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 33 MRELRKVVTVGVVGGSDLSKISEQLGKTVIDEYDYVFSENGLVAHKDGKLI 83
M EL ++ G G ++ + + L KT + YV + LV HK+G+L+
Sbjct: 136 MEELHRIRKEGEAGEDEVGRAEKDLDKTT---HQYVTQIDELVKHKEGELL 183
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 11 LFDVDGTLTAP---RKAATPQMLEF----MRELRKVVTVGVVGGSDLSKISEQLGKTVID 63
+FD+DGTLT AA + L+ + R +G GG L +S + G ++ D
Sbjct: 10 IFDLDGTLTDSVYQNVAAWKEALDAENIPLAXWRIHRKIGXSGGLXLKSLSRETGXSITD 69
Query: 64 EYDYVFSENGLVA-----HKDGKLIGTQSLKSFLGGEKLKEFI 101
E SE A H+ L G L L E LK I
Sbjct: 70 EQAERLSEKHAQAYERLQHQIIALPGAVELLETLDKENLKWCI 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,653,935
Number of Sequences: 62578
Number of extensions: 337257
Number of successful extensions: 752
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 15
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)