BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038499
(609 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase
Length = 408
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 116/284 (40%), Gaps = 33/284 (11%)
Query: 184 VFVGPHEHHSNLLSWRQSLAEV-VEIXXXXXXXXXIEALRSKLELYKDAKRPILGSFSAC 242
+ + EHH+N++ W+ A V E+ L + L+ + R L + +
Sbjct: 118 IIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTR--LLAITHV 175
Query: 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG 302
SNV G + + L HQ+G D A + + +DV++ D Y S HK L G
Sbjct: 176 SNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFY---VFSGHK-LYG 231
Query: 303 PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362
P GIL + +AL Q PP GG + V+ +E T R GTP +
Sbjct: 232 PTGIGILYVKEALLQ--EMPPWEGGGSMIATVS-LSEGTT--WTKAPWRFEAGTPNTGGI 286
Query: 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422
I A +G I + E+ + AL +L ++ + G R +++FN
Sbjct: 287 IGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG--PQNRLGVIAFN---- 340
Query: 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
LG++ H V + L++ +GI R G CA P
Sbjct: 341 -----LGKH---------HAYDVGSFLDN-YGIAVRTGHHCAMP 369
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 115/284 (40%), Gaps = 33/284 (11%)
Query: 184 VFVGPHEHHSNLLSWRQSLAEV-VEIXXXXXXXXXIEALRSKLELYKDAKRPILGSFSAC 242
+ + EHH+N++ W+ A V E+ L + L+ A R L + +
Sbjct: 116 IIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDAATR--LLAITHV 173
Query: 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG 302
SNV G + + L HQ+G D A + + +DV++ D Y S HK L G
Sbjct: 174 SNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFY---VFSGHK-LYG 229
Query: 303 PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362
P GIL + +AL Q PP GG + V+ +E T R GTP +
Sbjct: 230 PTGIGILYVKEALLQ--EMPPWEGGGSMIATVS-LSEGTT--WTKAPWRFEAGTPNTGGI 284
Query: 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422
I A +G I + E+ + AL +L ++ + G + R +++FN+ +
Sbjct: 285 IGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQA--RLGVIAFNLGAH 342
Query: 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
H V + L++ +GI R G CA P
Sbjct: 343 ------------------HAYDVGSFLDN-YGIAVRTGHHCAMP 367
>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With
L-Propargylglycine
Length = 406
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 116/284 (40%), Gaps = 33/284 (11%)
Query: 184 VFVGPHEHHSNLLSWRQSLAEV-VEIXXXXXXXXXIEALRSKLELYKDAKRPILGSFSAC 242
+ + EHH+N++ W+ A V E+ L + L+ + R L + +
Sbjct: 116 IIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTR--LLAITHV 173
Query: 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG 302
SNV G + + L HQ+G D A + + +DV++ D Y S HK L G
Sbjct: 174 SNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFY---VFSGHK-LYG 229
Query: 303 PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362
P GIL + +AL Q PP GG + V+ +E T R GTP +
Sbjct: 230 PTGIGILYVKEALLQ--EMPPWEGGGSMIATVS-LSEGTT--WTKAPWRFEAGTPNTGGI 284
Query: 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422
I A +G I + E+ + AL +L ++ + G R +++FN
Sbjct: 285 IGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG--PQNRLGVIAFN---- 338
Query: 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
LG++ H V + L++ +GI R G CA P
Sbjct: 339 -----LGKH---------HAYDVGSFLDN-YGIAVRTGHHCAMP 367
>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE
PERSULFIDE Intermediate (Residue Css).
pdb|1KMK|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.20A WITH THE CYSTEINE
PERSELENIDE Intermediate (Residue Csz)
Length = 406
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 14/237 (5%)
Query: 184 VFVGPHEHHSNLLSWRQSLAEV-VEIXXXXXXXXXIEALRSKLELYKDAKRPILGSFSAC 242
+ + EHH+N++ W+ A V E+ L + L+ + R L + +
Sbjct: 116 IIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTR--LLAITHV 173
Query: 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG 302
SNV G + + L HQ+G D A + + +DV++ D Y S HK L G
Sbjct: 174 SNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFY---VFSGHK-LYG 229
Query: 303 PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362
P GIL + +AL Q PP GG + V+ +E T R GTP +
Sbjct: 230 PTGIGILYVKEALLQ--EMPPWEGGGSMIATVS-LSEGTT--WTKAPWRFEAGTPNTGGI 284
Query: 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419
I A +G I + E+ + AL +L ++ + G R +++FN+
Sbjct: 285 IGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG--PQNRLGVIAFNL 339
>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
Desulfurase From Synechocystis Pcc 6803
Length = 420
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 106/288 (36%), Gaps = 37/288 (12%)
Query: 190 EHHSNLLSWRQSLAEVVEIXXXXXXXXXIEALRSKLELYKD--AKRPILGSFSACSNVTG 247
EHHSNL+ W+ A+ + E LE +K +++ L + SN G
Sbjct: 127 EHHSNLVPWQMVAAKTGAVLKFVQLD---EQESFDLEHFKTLLSEKTKLVTVVHISNTLG 183
Query: 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPG 307
+ IA+L HQ G D S P+ +DV Q D + S HK + P G
Sbjct: 184 CVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDV---QLIDCDWLVASGHK-MCAPTGIG 239
Query: 308 ILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAAL 367
L + + L + PP GG + V D ++ + GTP + + I
Sbjct: 240 FLYGKEEI--LEAMPPFFGGGEMIAEVF----FDHFTTGELPHKFEAGTPAIAEAIALGA 293
Query: 368 AFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTST--KRQAILSFNIHSSTIN 425
A +G E I E + L +++ G R A+ SFN+
Sbjct: 294 AVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG---- 349
Query: 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473
LH VAT++ D GI R G C P H L D
Sbjct: 350 --------------LHASDVATMV-DQDGIAIRSGHHCTQPL-HRLFD 381
>pdb|3CAI|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
pdb|3CAI|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Rv3778c
Protein
Length = 406
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLS 295
L + ++ S G +D R++ +L+H G D +A+ PY +D+R +TD D + ++
Sbjct: 168 LVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIR--ETDA-DVVTVN 224
Query: 296 THKFLGGP 303
H + GGP
Sbjct: 225 AHAW-GGP 231
>pdb|1RN4|A Chain A, His92ala Mutation In Ribonuclease T1 Induces Segmental
Flexibility. An X-Ray Study
pdb|4RNT|A Chain A, His 92 Ala Mutation In Ribonuclease T1 Induces Segmental
Flexibility. An X-Ray Study
Length = 104
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|3BIR|A Chain A, Disecting Histidine Interactions In Ribonuclease T1 By Asn
And Gln Substitutions
Length = 104
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1RGK|A Chain A, Rnase T1 Mutant Glu46gln Binds The Inhibitors 2'gmp And
2'amp At The 3' Subsite
pdb|1RGL|A Chain A, Rnase T1 Mutant Glu46gln Binds The Inhibitors 2'gmp And
2'amp At The 3' Subsite
Length = 104
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYQGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|4HOH|A Chain A, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
pdb|4HOH|B Chain B, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
pdb|4HOH|C Chain C, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
pdb|4HOH|D Chain D, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
Length = 104
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|5BIR|A Chain A, Disecting Histidine Interactions In Ribonuclease T1 Using
Asn And Gln Mutations
pdb|5BIR|B Chain B, Disecting Histidine Interactions In Ribonuclease T1 Using
Asn And Gln Mutations
pdb|4BIR|A Chain A, Ribonuclease T1: Free His92gln Mutant
Length = 104
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|5HOH|A Chain A, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
pdb|5HOH|B Chain B, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
pdb|5HOH|D Chain D, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
pdb|5HOH|C Chain C, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
Length = 104
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1RHL|A Chain A, Ribonuclease T1 Complexed With 2'gmpG23A MUTANT
Length = 104
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1RGC|A Chain A, The Complex Between Ribonuclease T1 And 3'-guanylic Acid
Suggests Geometry Of Enzymatic Reaction Path. An X-ray
Study
pdb|1RGC|B Chain B, The Complex Between Ribonuclease T1 And 3'-guanylic Acid
Suggests Geometry Of Enzymatic Reaction Path. An X-ray
Study
pdb|7GSP|A Chain A, Ribonuclease T12',3'-Cgps, Non-Productive
pdb|7GSP|B Chain B, Ribonuclease T12',3'-Cgps, Non-Productive
pdb|1BVI|A Chain A, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|1BVI|B Chain B, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|1BVI|C Chain C, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|1BVI|D Chain D, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|2BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|3BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|4BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|5BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|1I0V|A Chain A, Ribonuclease T1 In Complex With 2'gmp (Form I Crystal)
pdb|1I0X|A Chain A, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1I0X|B Chain B, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1I0X|C Chain C, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1I0X|D Chain D, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1BU4|A Chain A, Ribonuclease 1 Complex With 2'gmp
pdb|1GSP|A Chain A, Ribonuclease T1 Complexed With 2',3'-Cgps, 1 Day
pdb|1RGA|A Chain A, Crystal Structure Of Rnase T1 With 3'-Gmp And Guanosine: A
Product Complex
pdb|1RNT|A Chain A, Restrained Least-Squares Refinement Of The Crystal
Structure Of The Ribonuclease T1(Asterisk)2(Prime)-
Guanylic Acid Complex At 1.9 Angstroms Resolution
pdb|2GSP|A Chain A, Ribonuclease T12',3'-Cgps And 3'-Gmp, 2 Days
pdb|2RNT|A Chain A, Three-Dimensional Structure Of Ribonuclease T1 Complexed
With Guanylyl-2(Prime),5(Prime)-Guanosine At 1.8
Angstroms Resolution
pdb|3GSP|A Chain A, Ribonuclease T1 Complexed With 2',3'-Cgps + 3'-Gmp, 4 Days
pdb|3RNT|A Chain A, Crystal Structure Of Guanosine-Free Ribonuclease T1,
Complexed With Vanadate(V), Suggests Conformational
Change Upon Substrate Binding
pdb|4GSP|A Chain A, Ribonuclease T1 Complexed With 2',3'-Cgps + 3'-Gmp, 7 Days
pdb|5GSP|A Chain A, Ribonuclease T13'-Gmp, 9 Weeks
pdb|5RNT|A Chain A, X-Ray Analysis Of Cubic Crystals Of The Complex Formed
Between Ribonuclease T1 And Guanosine-3',5'-Bisphosphate
pdb|6GSP|A Chain A, Ribonuclease T1/3'-gmp, 15 Weeks
pdb|6RNT|A Chain A, Crystal Structure Of Ribonuclease T1 Complexed With
Adenosine 2'-monophosphate At 1.8-angstroms Resolution
pdb|8RNT|A Chain A, Structure Of Ribonuclease T1 Complexed With Zinc(Ii) At
1.8 Angstroms Resolution: A Zn2+.6h2o.Carboxylate
Clathrate
pdb|9RNT|A Chain A, Ribonuclease T1 With Free Recognition And Catalytic Site:
Crystal Structure Analysis At 1.5 Angstroms Resolution
pdb|3URP|A Chain A, Re-refinement Of Pdb Entry 5rnt - Ribonuclease T1 With
Guanosine-3', 5'-diphosphate And Phosphate Ion Bound
Length = 104
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|2HOH|A Chain A, Ribonuclease T1 (n9a Mutant) Complexed With 2'gmp
pdb|2HOH|B Chain B, Ribonuclease T1 (n9a Mutant) Complexed With 2'gmp
pdb|2HOH|C Chain C, Ribonuclease T1 (n9a Mutant) Complexed With 2'gmp
pdb|2HOH|D Chain D, Ribonuclease T1 (n9a Mutant) Complexed With 2'gmp
Length = 104
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1BIR|A Chain A, Ribonuclease T1, Phe 100 To Ala Mutant Complexed With 2'
Gmp
pdb|1BIR|B Chain B, Ribonuclease T1, Phe 100 To Ala Mutant Complexed With 2'
Gmp
Length = 104
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1YGW|A Chain A, Nmr Structure Of Ribonuclease T1, 34 Structures
Length = 104
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1TRP|A Chain A, X-ray Crystallographic And Calorimeric Studies Of The
Effects Of The Mutation Trp 59 Tyr In Ribonuclease T1
pdb|1TRP|B Chain B, X-ray Crystallographic And Calorimeric Studies Of The
Effects Of The Mutation Trp 59 Tyr In Ribonuclease T1
Length = 104
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNWEGFDFSVSSPYYEYPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|7RNT|A Chain A, Crystal Structure Of The Tyr45trp Mutant Of Ribonuclease
T1 In A Complex With 2'-Adenylic Acid
Length = 104
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNWEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1FUS|A Chain A, Crystal Structures Of Ribonuclease F1 Of Fusarium
Moniliforme In Its Free Form And In Complex With 2'gmp
pdb|1FUT|A Chain A, Crystal Structures Of Ribonuclease F1 Of Fusarium
Moniliforme In Its Free Form And In Complex With 2'gmp
pdb|1RCK|A Chain A, The Three Dimensional Structure Of Guanine-Specific
Ribonuclease F1 In Solution Determined By Nmr
Spectroscopy And Distance Geometry
pdb|1RCL|A Chain A, The Three Dimensional Structure Of Guanine-Specific
Ribonuclease F1 In Solution Determined By Nmr
Spectroscopy And Distance Geometry
Length = 106
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 251 DTRSIARLLHQYGGFACFDFAASGPYVEIDVRSG 284
DT + H Y + FDF GPY E ++SG
Sbjct: 31 DTAGSSTYPHTYNNYEGFDFPVDGPYQEFPIKSG 64
>pdb|1TRQ|A Chain A, X-ray Crystallographic And Calorimeric Studies Of The
Effects Of The Mutation Trp 59 Tyr In Ribonuclease T1
pdb|1TRQ|B Chain B, X-ray Crystallographic And Calorimeric Studies Of The
Effects Of The Mutation Trp 59 Tyr In Ribonuclease T1
Length = 104
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEYPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 317 QLGSFPPSTCGGGTVNYVNGFN---EKDTLYLEDIEERESGGTPQVIQMIRA 365
+ GS+ P+TCG ++++ + +KD LEDI + T +V Q+I+A
Sbjct: 14 RFGSYCPTTCG--IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKA 63
>pdb|1I2G|A Chain A, Ribonuclease T1 V16t Mutant
Length = 104
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1I3F|A Chain A, Ribonuclease T1 V89s Mutant
Length = 104
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|3HOH|A Chain A, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
pdb|3HOH|B Chain B, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
pdb|3HOH|C Chain C, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
pdb|3HOH|D Chain D, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
Length = 104
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1HZ1|A Chain A, Ribonuclease T1 V16a Mutant In Complex With Mg2+
pdb|1I2E|A Chain A, Ribonuclease T1 V16a Mutant, Form I
pdb|1I2F|A Chain A, Ribonuclease T1 V16a Mutant, Form Ii
pdb|1HYF|A Chain A, Ribonuclease T1 V16a Mutant In Complex With Sr2+
Length = 104
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1G02|A Chain A, Ribonuclease T1 V16s Mutant
Length = 104
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1RN1|A Chain A, Three-Dimensional Structure Of Gln 25-Ribonuclease T1 At
1.84 Angstroms Resolution: Structural Variations At The
Base Recognition And Catalytic Sites
pdb|1RN1|B Chain B, Three-Dimensional Structure Of Gln 25-Ribonuclease T1 At
1.84 Angstroms Resolution: Structural Variations At The
Base Recognition And Catalytic Sites
pdb|1RN1|C Chain C, Three-Dimensional Structure Of Gln 25-Ribonuclease T1 At
1.84 Angstroms Resolution: Structural Variations At The
Base Recognition And Catalytic Sites
pdb|1B2M|A Chain A, Three-Dimensional Structure Of Ribonulcease T1 Complexed
With An Isosteric Phosphonate Analogue Of Gpu: Alternate
Substrate Binding Modes And Catalysis.
pdb|1B2M|B Chain B, Three-Dimensional Structure Of Ribonulcease T1 Complexed
With An Isosteric Phosphonate Analogue Of Gpu: Alternate
Substrate Binding Modes And Catalysis.
pdb|1IYY|A Chain A, Nmr Structure Of Gln25-Ribonuclease T1, 24 Structures
pdb|1RLS|A Chain A, Crystal Structure Of Rnase T1 Complexed With The Product
Nucleotide 3'-Gmp. Structural Evidence For Direct
Interaction Of Histidine 40 And Glutamic Acid 58 With
The 2'-Hydroxyl Group Of Ribose
Length = 104
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1FYS|A Chain A, Ribonuclease T1 V16c Mutant
Length = 104
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|2ZNL|A Chain A, Crystal Structure Of Pa-Pb1 Complex Form Influenza Virus
Rna Polymerase
Length = 478
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 173 IKCLRDEERWVV--FVGPHEHHSN---LLSWRQSLAEVVEI 208
IKC+R W V PHE N LLSW+Q LAE+ +I
Sbjct: 70 IKCMRTFFGWKEPNVVKPHEKGINPNYLLSWKQVLAELQDI 110
>pdb|4IUJ|A Chain A, Structure Of Polymerase Acid Protein (pa) From
Influenzavirus A Influenza A Virus A, Wilson-smith/1933
(h1n1)
Length = 464
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 173 IKCLRDEERWVV--FVGPHEHHSN---LLSWRQSLAEVVEI 208
IKC+R W V PHE N LLSW+Q LAE+ +I
Sbjct: 56 IKCMRTFFGWKEPNVVKPHEKGINPNYLLSWKQVLAELQDI 96
>pdb|1LOV|A Chain A, X-ray Structure Of The E58a Mutant Of Ribonuclease T1
Complexed With 3'-guanosine Monophosphate
pdb|1LRA|A Chain A, Crystallographic Study Of Glu 58 Ala Rnase
T1(Asterisk)2'-Guanosine Monophosphate At 1.9 Angstroms
Resolution
Length = 104
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYAWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1DET|A Chain A, Ribonuclease T1 Carboxymethylated At Glu 58 In Complex
With 2'gmp
pdb|3SYU|A Chain A, Re-Refined Coordinates For Pdb Entry 1det - Ribonuclease
T1 Carboxymethylated At Glu 58 In Complex With 2'gmp
Length = 104
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H+Y + FDF+ S PY DV SG + G D + + + L G
Sbjct: 40 HKYNNYEGFDFSVSSPYYXWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1TTO|A Chain A, Crystal Structure Of The Rnase T1 Variant R2
pdb|1TTO|B Chain B, Crystal Structure Of The Rnase T1 Variant R2
pdb|1TTO|C Chain C, Crystal Structure Of The Rnase T1 Variant R2
Length = 104
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H++ + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HEFRNWNGFDFSVSSPYYEYPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1FZU|A Chain A, Rnase T1 V78a Mutant
Length = 104
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYD-AIFLSTHKFLG 301
H+Y + FDF+ S PY E DV SG + G D A+F ++ G
Sbjct: 40 HKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRAVFNENNQLAG 88
>pdb|1CH0|A Chain A, Rnase T1 Variant With Altered Guanine Binding Segment
pdb|1CH0|B Chain B, Rnase T1 Variant With Altered Guanine Binding Segment
pdb|1CH0|C Chain C, Rnase T1 Variant With Altered Guanine Binding Segment
Length = 104
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H++ + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HEFRNWQGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1RDS|A Chain A, Crystal Structure Of Ribonuclease Ms (As Ribonuclease T1
Homologue) Complexed With A Guanylyl-3',5'-Cytidine
Analogue
pdb|1RMS|A Chain A, Crystal Structures Of Ribonuclease Ms Complexed With 3'-
Guanylic Acid A GpC Analogue,
2'-Deoxy-2'-Fluoroguanylyl- 3',5'-Cytidine
Length = 105
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVE------IDVRSGQTDGYDAIFLSTHKFLG 301
+Y +I H+Y + FDF SG Y E DV +G + G D + + L
Sbjct: 27 LYESGDTIDDYPHEYHDYEGFDFPVSGTYYEYPIMSDYDVYTGGSPGADRVIFNGDDELA 86
Query: 302 G 302
G
Sbjct: 87 G 87
>pdb|1Q9E|A Chain A, Rnase T1 Variant With Adenine Specificity
pdb|1Q9E|B Chain B, Rnase T1 Variant With Adenine Specificity
pdb|1Q9E|C Chain C, Rnase T1 Variant With Adenine Specificity
Length = 104
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 260 HQYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
H++ + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 40 HEFRNWNGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1LOW|A Chain A, X-ray Structure Of The H40a Mutant Of Ribonuclease T1
Complexed With 3'-guanosine Monophosphate
Length = 104
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 261 QYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 41 KYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|2AAD|A Chain A, The Role Of Histidine-40 In Ribonuclease T1 Catalysis:
Three-Dimensional Structures Of The Partially Active
His40lys Mutant
pdb|2AAD|B Chain B, The Role Of Histidine-40 In Ribonuclease T1 Catalysis:
Three-Dimensional Structures Of The Partially Active
His40lys Mutant
pdb|2AAE|A Chain A, The Role Of Histidine-40 In Ribonuclease T1 Catalysis:
Three-Dimensional Structures Of The Partially Active
His40lys Mutant
Length = 104
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 261 QYGGFACFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGG 302
+Y + FDF+ S PY E DV SG + G D + + + L G
Sbjct: 41 KYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAG 88
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 371 VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGE 430
+ EYIG E +K++ Y+E A R P +++ + G + + H +N +
Sbjct: 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
Query: 431 NTKTETDKPLHGPFVATLLNDL 452
E KP G A L N L
Sbjct: 71 GPAIE--KP--GDLAAILANSL 88
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 371 VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGE 430
+ EYIG E +K++ Y+E A R P +++ + G + + H +N +
Sbjct: 11 LDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTS 70
Query: 431 NTKTETDKPLHGPFVATLLNDL 452
E KP G A L N L
Sbjct: 71 GPAIE--KP--GDLAAILANSL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,465,269
Number of Sequences: 62578
Number of extensions: 770228
Number of successful extensions: 1695
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1687
Number of HSP's gapped (non-prelim): 46
length of query: 609
length of database: 14,973,337
effective HSP length: 105
effective length of query: 504
effective length of database: 8,402,647
effective search space: 4234934088
effective search space used: 4234934088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)