Query 038502
Match_columns 100
No_of_seqs 128 out of 1084
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:41:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03024 Putative EG45-like do 100.0 4.6E-31 9.9E-36 176.6 10.0 96 2-100 18-124 (125)
2 PLN00193 expansin-A; Provision 99.9 4.3E-24 9.4E-29 157.2 8.5 96 5-100 30-154 (256)
3 PLN00050 expansin A; Provision 99.9 8.7E-24 1.9E-28 155.0 7.7 94 6-100 26-146 (247)
4 PLN03023 Expansin-like B1; Pro 99.9 1.1E-21 2.4E-26 143.9 9.4 91 6-100 26-137 (247)
5 PF03330 DPBB_1: Rare lipoprot 99.9 4.6E-22 1E-26 122.7 3.7 65 32-99 1-78 (78)
6 smart00837 DPBB_1 Rare lipopro 99.8 7.2E-21 1.6E-25 120.3 5.3 68 32-99 1-87 (87)
7 COG4305 Endoglucanase C-termin 99.5 8E-14 1.7E-18 98.1 6.4 91 5-100 30-128 (232)
8 TIGR00413 rlpA rare lipoprotei 99.4 6.1E-13 1.3E-17 95.4 8.1 83 8-99 1-88 (208)
9 COG0797 RlpA Lipoproteins [Cel 99.3 4E-12 8.7E-17 92.5 7.8 87 4-99 81-172 (233)
10 PRK10672 rare lipoprotein A; P 99.2 6.6E-11 1.4E-15 90.9 9.4 87 4-99 77-168 (361)
11 PF00967 Barwin: Barwin family 98.9 4.6E-10 1E-14 73.8 1.2 54 42-100 56-115 (119)
12 PF07249 Cerato-platanin: Cera 98.3 2.7E-06 5.8E-11 56.7 5.9 63 31-100 44-110 (119)
13 PRK08061 rpsN 30S ribosomal pr 56.7 9.7 0.00021 22.4 1.8 37 61-99 17-61 (61)
14 PF02015 Glyco_hydro_45: Glyco 51.2 12 0.00026 27.1 1.9 35 44-81 82-122 (201)
15 PHA02945 interferon resistance 36.9 40 0.00086 21.3 2.5 22 56-81 59-81 (88)
16 TIGR02645 ARCH_P_rylase putati 34.6 80 0.0017 25.9 4.4 48 47-97 30-78 (493)
17 PRK06911 rpsN 30S ribosomal pr 33.0 32 0.0007 22.0 1.6 43 57-99 52-100 (100)
18 COG0199 RpsN Ribosomal protein 31.2 31 0.00067 20.3 1.2 39 59-99 15-61 (61)
19 CHL00074 rps14 ribosomal prote 28.6 23 0.00051 22.6 0.4 43 57-99 52-100 (100)
20 PRK08881 rpsN 30S ribosomal pr 26.6 30 0.00065 22.2 0.7 43 57-99 53-101 (101)
21 PF11023 DUF2614: Protein of u 24.8 35 0.00076 22.6 0.7 14 66-81 86-99 (114)
22 PHA03078 transcriptional elong 21.6 35 0.00076 25.0 0.3 14 56-69 165-178 (219)
23 PF05796 Chordopox_G2: Chordop 21.4 32 0.0007 25.2 0.1 29 56-84 169-198 (216)
24 PF13453 zf-TFIIB: Transcripti 21.3 1.4E+02 0.003 15.4 2.8 23 62-87 16-38 (41)
No 1
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.97 E-value=4.6e-31 Score=176.57 Aligned_cols=96 Identities=54% Similarity=0.950 Sum_probs=84.9
Q ss_pred CcCceeeeEEEeCCCCCCCCcCCCCCCCCeEEEecccccCCCCCCCCCcc-----------cCCCCCCeEEEEEeecCCC
Q 038502 2 ASAQNHGTATYYTPPYIPSACYGFADQGVMIAAASEAIWNGGGACGQGTP-----------NPCQGSSSVVVKIVDLCPA 70 (100)
Q Consensus 2 ~~~~~~g~aT~Y~~~~~~gaC~~~~~~~~~~aAls~~~~~~g~~CG~~i~-----------~~~~~g~sv~v~V~D~Cp~ 70 (100)
.+.+..|+||||++ ..++|||+....+.++||+|+.+|++|+.||++++ ++| +||+|+|+|+|+||+
T Consensus 18 ~~~~~~G~AT~Y~~-~~~gAC~~~~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c-~gksV~V~VtD~CP~ 95 (125)
T PLN03024 18 VSYATPGIATFYTS-YTPSACYRGTSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPC-TGKSVTVKIVDHCPS 95 (125)
T ss_pred hhcccceEEEEeCC-CCCccccCCCCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccc-cCCeEEEEEEcCCCC
Confidence 46788999999997 45799977777889999999999999999999532 367 889999999999994
Q ss_pred CCCCCceecCHHHHHhhhcCCCcEEEEEEC
Q 038502 71 GSCRGTIDLSQEAFASIADTACGVINISYQ 100 (100)
Q Consensus 71 ~~C~~~lDLS~~aF~~l~~~~~G~~~v~w~ 100 (100)
.|.+|||||++||++||+++.|+++|+|+
T Consensus 96 -~C~~~~DLS~~AF~~iA~~~aG~v~V~y~ 124 (125)
T PLN03024 96 -GCASTLDLSREAFAQIANPVAGIINIDYI 124 (125)
T ss_pred -CCCCceEcCHHHHHHhcCccCCEEEEEEe
Confidence 47799999999999999999999999995
No 2
>PLN00193 expansin-A; Provisional
Probab=99.90 E-value=4.3e-24 Score=157.23 Aligned_cols=96 Identities=30% Similarity=0.538 Sum_probs=80.4
Q ss_pred ceeeeEEEeCCCCC----CCCc-CCCC---CCCCeEEEecccccCCCCCCCCCccc---------CCCCCCeEEEEEeec
Q 038502 5 QNHGTATYYTPPYI----PSAC-YGFA---DQGVMIAAASEAIWNGGGACGQGTPN---------PCQGSSSVVVKIVDL 67 (100)
Q Consensus 5 ~~~g~aT~Y~~~~~----~gaC-~~~~---~~~~~~aAls~~~~~~g~~CG~~i~~---------~~~~g~sv~v~V~D~ 67 (100)
-..++||||+.+++ +||| |+.. +.+.++||+|+.+|++|..||++... .|.+|++|+|+|+|+
T Consensus 30 W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~Vt~td~ 109 (256)
T PLN00193 30 WTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNF 109 (256)
T ss_pred ceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEEEEecC
Confidence 46899999997543 5999 7754 46779999999999999999994322 354567999999999
Q ss_pred CCCC---------CCC---CceecCHHHHHhhhcCCCcEEEEEEC
Q 038502 68 CPAG---------SCR---GTIDLSQEAFASIADTACGVINISYQ 100 (100)
Q Consensus 68 Cp~~---------~C~---~~lDLS~~aF~~l~~~~~G~~~v~w~ 100 (100)
||++ +|. .|||||+.||.+||.+..|+++|+||
T Consensus 110 CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yr 154 (256)
T PLN00193 110 CPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQ 154 (256)
T ss_pred CCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEE
Confidence 9962 385 89999999999999999999999996
No 3
>PLN00050 expansin A; Provisional
Probab=99.90 E-value=8.7e-24 Score=155.02 Aligned_cols=94 Identities=32% Similarity=0.582 Sum_probs=79.1
Q ss_pred eeeeEEEeCCCCC----CCCc-CCCC---CCCCeEEEecccccCCCCCCCCC--cc-----cCCCCCCeEEEEEeecCCC
Q 038502 6 NHGTATYYTPPYI----PSAC-YGFA---DQGVMIAAASEAIWNGGGACGQG--TP-----NPCQGSSSVVVKIVDLCPA 70 (100)
Q Consensus 6 ~~g~aT~Y~~~~~----~gaC-~~~~---~~~~~~aAls~~~~~~g~~CG~~--i~-----~~~~~g~sv~v~V~D~Cp~ 70 (100)
..++||||+.+++ +||| |+.+ +.+.++||+|+.+|++|..||++ |+ .+| .+++|+|+|+|+||+
T Consensus 26 ~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C-~~gsV~V~itd~CP~ 104 (247)
T PLN00050 26 TGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWC-LPGSIIITATNFCPP 104 (247)
T ss_pred cccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCccc-CCCcEEEEEecCCCC
Confidence 5799999987654 5999 7764 46789999999999999999994 32 135 445899999999996
Q ss_pred C---------CCC---CceecCHHHHHhhhcCCCcEEEEEEC
Q 038502 71 G---------SCR---GTIDLSQEAFASIADTACGVINISYQ 100 (100)
Q Consensus 71 ~---------~C~---~~lDLS~~aF~~l~~~~~G~~~v~w~ 100 (100)
+ +|. .|||||+.||.+||.+..|+++|+||
T Consensus 105 ~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yR 146 (247)
T PLN00050 105 NLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYR 146 (247)
T ss_pred CcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEE
Confidence 2 384 99999999999999999999999996
No 4
>PLN03023 Expansin-like B1; Provisional
Probab=99.86 E-value=1.1e-21 Score=143.93 Aligned_cols=91 Identities=32% Similarity=0.562 Sum_probs=76.8
Q ss_pred eeeeEEEeCCCCC----CCCc-CCCC---CCCCeEEEecccccCCCCCCCCC--c----ccCCCCCCeEEEEEeecCCCC
Q 038502 6 NHGTATYYTPPYI----PSAC-YGFA---DQGVMIAAASEAIWNGGGACGQG--T----PNPCQGSSSVVVKIVDLCPAG 71 (100)
Q Consensus 6 ~~g~aT~Y~~~~~----~gaC-~~~~---~~~~~~aAls~~~~~~g~~CG~~--i----~~~~~~g~sv~v~V~D~Cp~~ 71 (100)
..++||||+++++ +||| |++. ..+.++||+| .+|++|..||++ | ...| .+++|+|+|||.||
T Consensus 26 ~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C-~~~~v~V~iTd~~~-- 101 (247)
T PLN03023 26 TYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLC-SDDGVNVVVTDYGE-- 101 (247)
T ss_pred ccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCcc-CCCCeEEEEEeCCC--
Confidence 5789999998763 6899 7764 3567899998 999999999994 3 3457 66799999999998
Q ss_pred CCCCceecCHHHHHhhhc-------CCCcEEEEEEC
Q 038502 72 SCRGTIDLSQEAFASIAD-------TACGVINISYQ 100 (100)
Q Consensus 72 ~C~~~lDLS~~aF~~l~~-------~~~G~~~v~w~ 100 (100)
.+..|||||..||.+||. ...|+++|+||
T Consensus 102 ~~~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~Yr 137 (247)
T PLN03023 102 GDKTDFILSPRAYARLARPNMAAELFAYGVVDVEYR 137 (247)
T ss_pred CCCCccccCHHHHHHHhCccccchhccCcEEEeEEE
Confidence 666999999999999997 46799999986
No 5
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.85 E-value=4.6e-22 Score=122.68 Aligned_cols=65 Identities=42% Similarity=0.754 Sum_probs=54.3
Q ss_pred EEEecccccCCCCCCCCCcccC----------CCCC--CeEEEEEeecCCCCCCC-CceecCHHHHHhhhcCCCcEEEEE
Q 038502 32 IAAASEAIWNGGGACGQGTPNP----------CQGS--SSVVVKIVDLCPAGSCR-GTIDLSQEAFASIADTACGVINIS 98 (100)
Q Consensus 32 ~aAls~~~~~~g~~CG~~i~~~----------~~~g--~sv~v~V~D~Cp~~~C~-~~lDLS~~aF~~l~~~~~G~~~v~ 98 (100)
+||++..+|++|..||+++... | .. |+|+|+|+|+|| .|. +|||||+.||++|++++.|+++|+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~-~~~~ksV~v~V~D~Cp--~~~~~~lDLS~~aF~~la~~~~G~i~V~ 77 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTC-KVGNKSVTVTVVDRCP--GCPPNHLDLSPAAFKALADPDAGVIPVE 77 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--B-ESEECEEEEEEEEE-T--TSSSSEEEEEHHHHHHTBSTTCSSEEEE
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceE-EecCCeEEEEEEccCC--CCcCCEEEeCHHHHHHhCCCCceEEEEE
Confidence 5889999999999999942111 3 23 999999999999 899 999999999999999999999999
Q ss_pred E
Q 038502 99 Y 99 (100)
Q Consensus 99 w 99 (100)
|
T Consensus 78 w 78 (78)
T PF03330_consen 78 W 78 (78)
T ss_dssp E
T ss_pred C
Confidence 9
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.83 E-value=7.2e-21 Score=120.32 Aligned_cols=68 Identities=35% Similarity=0.678 Sum_probs=58.3
Q ss_pred EEEecccccCCCCCCCCC--cc-----cCCCCCCeEEEEEeecCCCC---------CCC---CceecCHHHHHhhhcCCC
Q 038502 32 IAAASEAIWNGGGACGQG--TP-----NPCQGSSSVVVKIVDLCPAG---------SCR---GTIDLSQEAFASIADTAC 92 (100)
Q Consensus 32 ~aAls~~~~~~g~~CG~~--i~-----~~~~~g~sv~v~V~D~Cp~~---------~C~---~~lDLS~~aF~~l~~~~~ 92 (100)
+||+|+.+|++|..||++ |+ ..|.++++|+|+|+|+||++ +|. .|||||+.||.+||.+..
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~~ 80 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYKA 80 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhcC
Confidence 479999999999999994 43 14644579999999999953 474 899999999999999999
Q ss_pred cEEEEEE
Q 038502 93 GVINISY 99 (100)
Q Consensus 93 G~~~v~w 99 (100)
|+|+|+|
T Consensus 81 Gvi~v~y 87 (87)
T smart00837 81 GIVPVKY 87 (87)
T ss_pred CEEeeEC
Confidence 9999997
No 7
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.48 E-value=8e-14 Score=98.07 Aligned_cols=91 Identities=30% Similarity=0.390 Sum_probs=75.9
Q ss_pred ceeeeEEEeCCCCCCCCc-CCCCCCCCeEEEecccccCCC----CCCCC--CcccCCCCCCeEEEEEeecCCCCCCC-Cc
Q 038502 5 QNHGTATYYTPPYIPSAC-YGFADQGVMIAAASEAIWNGG----GACGQ--GTPNPCQGSSSVVVKIVDLCPAGSCR-GT 76 (100)
Q Consensus 5 ~~~g~aT~Y~~~~~~gaC-~~~~~~~~~~aAls~~~~~~g----~~CG~--~i~~~~~~g~sv~v~V~D~Cp~~~C~-~~ 76 (100)
.+.|.|||-+..+.+||- ..+.+.+.-|.||++.+-|-| ++-|. +|.++ +| +.+|.|+|+-| +-. +.
T Consensus 30 ~f~G~ATyTgsGYsGGAflLDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGP--KG-~TTVYVTDlYP--egasGa 104 (232)
T COG4305 30 LFEGYATYTGSGYSGGAFLLDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQGP--KG-KTTVYVTDLYP--EGASGA 104 (232)
T ss_pred ccceeEEEecccccCceEEecCcCCcceeeecCHHHcccCCchhhhccceEEEECC--CC-ceEEEEecccc--cccccc
Confidence 478999999888888888 445566777999999888754 46677 56666 56 78999999999 555 99
Q ss_pred eecCHHHHHhhhcCCCcEEEEEEC
Q 038502 77 IDLSQEAFASIADTACGVINISYQ 100 (100)
Q Consensus 77 lDLS~~aF~~l~~~~~G~~~v~w~ 100 (100)
|||||.||.+|+++.+|+|+|+||
T Consensus 105 LDLSpNAFakIGnm~qGrIpvqWr 128 (232)
T COG4305 105 LDLSPNAFAKIGNMKQGRIPVQWR 128 (232)
T ss_pred cccChHHHhhhcchhcCccceeEE
Confidence 999999999999999999999996
No 8
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=99.43 E-value=6.1e-13 Score=95.37 Aligned_cols=83 Identities=27% Similarity=0.295 Sum_probs=67.0
Q ss_pred eeEEEeCCCCCC--CCcCCCCCCCCeEEEecccccCCCCCCCC--CcccCCCCCCeEEEEEeecCCCCCCC-CceecCHH
Q 038502 8 GTATYYTPPYIP--SACYGFADQGVMIAAASEAIWNGGGACGQ--GTPNPCQGSSSVVVKIVDLCPAGSCR-GTIDLSQE 82 (100)
Q Consensus 8 g~aT~Y~~~~~~--gaC~~~~~~~~~~aAls~~~~~~g~~CG~--~i~~~~~~g~sv~v~V~D~Cp~~~C~-~~lDLS~~ 82 (100)
|.|+||++...+ +|.+.......|.|| +..+. .|. +|+++- |||+|+|+|+|++| .=. ..||||++
T Consensus 1 G~ASwYg~~f~G~~TAnGe~y~~~~~tAA-HktLP-----lgT~V~VtNl~-ngrsviVrVnDRGP--f~~gRiIDLS~a 71 (208)
T TIGR00413 1 GLASWYGPKFHGRKTANGEVYNMKALTAA-HKTLP-----FNTYVKVTNLH-NNRSVIVRINDRGP--FSDDRIIDLSHA 71 (208)
T ss_pred CEEeEeCCCCCCCcCCCCeecCCCccccc-cccCC-----CCCEEEEEECC-CCCEEEEEEeCCCC--CCCCCEEECCHH
Confidence 689999986553 777666555667665 44454 688 577777 99999999999999 655 89999999
Q ss_pred HHHhhhcCCCcEEEEEE
Q 038502 83 AFASIADTACGVINISY 99 (100)
Q Consensus 83 aF~~l~~~~~G~~~v~w 99 (100)
|+++|+....|+.+|+.
T Consensus 72 AA~~Lg~~~~G~a~V~v 88 (208)
T TIGR00413 72 AAREIGLISRGVGQVRI 88 (208)
T ss_pred HHHHcCCCcCceEEEEE
Confidence 99999999999988764
No 9
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=4e-12 Score=92.49 Aligned_cols=87 Identities=25% Similarity=0.244 Sum_probs=66.7
Q ss_pred CceeeeEEEeCCCCCC--CCcCCCCCCCCeEEEecccccCCCCCCCC--CcccCCCCCCeEEEEEeecCCCCCCC-Ccee
Q 038502 4 AQNHGTATYYTPPYIP--SACYGFADQGVMIAAASEAIWNGGGACGQ--GTPNPCQGSSSVVVKIVDLCPAGSCR-GTID 78 (100)
Q Consensus 4 ~~~~g~aT~Y~~~~~~--gaC~~~~~~~~~~aAls~~~~~~g~~CG~--~i~~~~~~g~sv~v~V~D~Cp~~~C~-~~lD 78 (100)
....|.|+||+...++ +|-+...+...++|| +..|. -|. +|+|.- |||+|+|+|+||+| .=. ..||
T Consensus 81 ~~~~G~ASwYg~~fhgr~TA~Ge~~n~~~~tAA-H~TLP-----~~t~v~VtNl~-NgrsvvVRINDRGP--f~~gRiID 151 (233)
T COG0797 81 FEQVGYASWYGEKFHGRKTANGERYDMNALTAA-HKTLP-----LPTYVRVTNLD-NGRSVVVRINDRGP--FVSGRIID 151 (233)
T ss_pred ccccceeeeeccccCCccccCcccccccccccc-cccCC-----CCCEEEEEEcc-CCcEEEEEEeCCCC--CCCCcEeE
Confidence 3467999999987765 444444444556655 55554 255 688887 99999999999999 445 8999
Q ss_pred cCHHHHHhhhcCCCcEEEEEE
Q 038502 79 LSQEAFASIADTACGVINISY 99 (100)
Q Consensus 79 LS~~aF~~l~~~~~G~~~v~w 99 (100)
||.+|+++|+....|+.+|..
T Consensus 152 lS~aAA~~l~~~~~G~a~V~i 172 (233)
T COG0797 152 LSKAAADKLGMIRSGVAKVRI 172 (233)
T ss_pred cCHHHHHHhCCccCceEEEEE
Confidence 999999999999999887654
No 10
>PRK10672 rare lipoprotein A; Provisional
Probab=99.23 E-value=6.6e-11 Score=90.89 Aligned_cols=87 Identities=22% Similarity=0.174 Sum_probs=68.1
Q ss_pred CceeeeEEEeCCCCCC--CCcCCCCCCCCeEEEecccccCCCCCCCC--CcccCCCCCCeEEEEEeecCCCCCCC-Ccee
Q 038502 4 AQNHGTATYYTPPYIP--SACYGFADQGVMIAAASEAIWNGGGACGQ--GTPNPCQGSSSVVVKIVDLCPAGSCR-GTID 78 (100)
Q Consensus 4 ~~~~g~aT~Y~~~~~~--gaC~~~~~~~~~~aAls~~~~~~g~~CG~--~i~~~~~~g~sv~v~V~D~Cp~~~C~-~~lD 78 (100)
....|.|+||+...++ +|.+.......|.||-. .|. .|. +|+++- |||+|+|+|+||+| .=. ..||
T Consensus 77 ~~~~G~ASwYg~~f~G~~TA~Ge~~~~~~~tAAH~-tLP-----lps~vrVtNl~-ngrsvvVrVnDRGP--~~~gRiiD 147 (361)
T PRK10672 77 FSQAGLAAIYDAEAGSNLTASGERFDPNALTAAHP-TLP-----IPSYVRVTNLA-NGRMIVVRINDRGP--YGPGRVID 147 (361)
T ss_pred cceEEEEEEeCCccCCCcCcCceeecCCcCeeecc-CCC-----CCCEEEEEECC-CCcEEEEEEeCCCC--CCCCCeeE
Confidence 3468999999987654 55555555566776644 443 466 678887 99999999999999 556 9999
Q ss_pred cCHHHHHhhhcCCCcEEEEEE
Q 038502 79 LSQEAFASIADTACGVINISY 99 (100)
Q Consensus 79 LS~~aF~~l~~~~~G~~~v~w 99 (100)
||++|+++|+....+++.|+.
T Consensus 148 LS~aAA~~Lg~~~~~~V~ve~ 168 (361)
T PRK10672 148 LSRAAADRLNTSNNTKVRIDP 168 (361)
T ss_pred cCHHHHHHhCCCCCceEEEEE
Confidence 999999999988778887763
No 11
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=98.89 E-value=4.6e-10 Score=73.83 Aligned_cols=54 Identities=33% Similarity=0.654 Sum_probs=39.0
Q ss_pred CCCCCCC--CcccCCCCCCeEEEEEeecCCCCCCCCceecCHHHHHhhh----cCCCcEEEEEEC
Q 038502 42 GGGACGQ--GTPNPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASIA----DTACGVINISYQ 100 (100)
Q Consensus 42 ~g~~CG~--~i~~~~~~g~sv~v~V~D~Cp~~~C~~~lDLS~~aF~~l~----~~~~G~~~v~w~ 100 (100)
....||| +|++.- +|.+++|+|||+|+. ++|||.+.+|++|. ....|.+.|.|+
T Consensus 56 gq~~CGkClrVTNt~-tga~~~~RIVDqCsn----GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~ 115 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA-TGAQVTVRIVDQCSN----GGLDLDPTVFNQIDTDGQGYAQGHLIVDYE 115 (119)
T ss_dssp SGGGTT-EEEEE-TT-T--EEEEEEEEE-SS----SSEES-SSSHHHH-SSSHHHHHTEEEEEEE
T ss_pred CcccccceEEEEecC-CCcEEEEEEEEcCCC----CCcccChhHHhhhccCCcccccceEEEEEE
Confidence 3468999 577777 899999999999993 58999999999995 246789998885
No 12
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.28 E-value=2.7e-06 Score=56.65 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=45.9
Q ss_pred eEEEecc-cccCCCCCCCCCcccCCCCCCeEEEEEeecCCCCCCCCceecCHHHHHhhhc---CCCcEEEEEEC
Q 038502 31 MIAAASE-AIWNGGGACGQGTPNPCQGSSSVVVKIVDLCPAGSCRGTIDLSQEAFASIAD---TACGVINISYQ 100 (100)
Q Consensus 31 ~~aAls~-~~~~~g~~CG~~i~~~~~~g~sv~v~V~D~Cp~~~C~~~lDLS~~aF~~l~~---~~~G~~~v~w~ 100 (100)
.|.+... .-|+ .+.||++.+..+ +||+|.|..+|.-+ ..|+||++||+.|.+ .+.|+|+++|+
T Consensus 44 ~IGg~~~V~gWn-S~~CGtC~~lty-~g~si~vlaID~a~-----~gfnis~~A~n~LT~g~a~~lG~V~a~~~ 110 (119)
T PF07249_consen 44 YIGGAPAVAGWN-SPNCGTCWKLTY-NGRSIYVLAIDHAG-----GGFNISLDAMNDLTNGQAVELGRVDATYT 110 (119)
T ss_dssp SEEEETT--STT--TTTT-EEEEEE-TTEEEEEEEEEE-S-----SSEEE-HHHHHHHHTS-CCCC-EEE-EEE
T ss_pred eeccccccccCC-CCCCCCeEEEEE-CCeEEEEEEEecCC-----CcccchHHHHHHhcCCcccceeEEEEEEE
Confidence 4555554 5575 589999877667 89999999999987 679999999999964 67899999874
No 13
>PRK08061 rpsN 30S ribosomal protein S14; Reviewed
Probab=56.70 E-value=9.7 Score=22.43 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=29.2
Q ss_pred EEEEeecCCCCCCC------CceecCHHHHHhhhc--CCCcEEEEEE
Q 038502 61 VVKIVDLCPAGSCR------GTIDLSQEAFASIAD--TACGVINISY 99 (100)
Q Consensus 61 ~v~V~D~Cp~~~C~------~~lDLS~~aF~~l~~--~~~G~~~v~w 99 (100)
.+++.++|. -|. ..+.||.-.|.+++. +-.|+..-+|
T Consensus 17 ~~r~~nRC~--~tGR~rgvir~fgl~R~~FRe~A~~G~ipGv~KasW 61 (61)
T PRK08061 17 KVRAYTRCE--RCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61 (61)
T ss_pred Ccccceeee--cCCCCcceeccCCccHHHHHHHHHcCcCCCeeeccC
Confidence 367888998 664 678899999999974 5678887776
No 14
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=51.25 E-value=12 Score=27.12 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCCCCC----cc-cCCCCCCeEEEEEeecCCCCCCC-CceecCH
Q 038502 44 GACGQG----TP-NPCQGSSSVVVKIVDLCPAGSCR-GTIDLSQ 81 (100)
Q Consensus 44 ~~CG~~----i~-~~~~~g~sv~v~V~D~Cp~~~C~-~~lDLS~ 81 (100)
..|+++ .+ .+- .||+.+|+|++.-- .=. +||||..
T Consensus 82 ~~Cc~Cy~LtFt~g~l-~GKkmiVQ~tNtG~--dlg~n~FDl~i 122 (201)
T PF02015_consen 82 SWCCACYELTFTSGPL-KGKKMIVQVTNTGG--DLGSNQFDLAI 122 (201)
T ss_dssp HHTT-EEEEEE-SSTT-TT-EEEEEEEEE-T--TTTTTEEEEE-
T ss_pred CcccceEEEEEcCCCc-CCCEeEEEecccCC--CCCCCeEEEEe
Confidence 469993 23 333 89999999999987 334 8999864
No 15
>PHA02945 interferon resistance protein; Provisional
Probab=36.87 E-value=40 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=16.9
Q ss_pred CCCeEEEEEeecCCCCCCC-CceecCH
Q 038502 56 GSSSVVVKIVDLCPAGSCR-GTIDLSQ 81 (100)
Q Consensus 56 ~g~sv~v~V~D~Cp~~~C~-~~lDLS~ 81 (100)
.|+.|+++|..-=+ . +++|||-
T Consensus 59 ~GqkvV~KVirVd~----~kg~IDlSl 81 (88)
T PHA02945 59 VGKTVKVKVIRVDY----TKGYIDVNY 81 (88)
T ss_pred cCCEEEEEEEEECC----CCCEEEeEe
Confidence 48899998876655 3 8999973
No 16
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=34.58 E-value=80 Score=25.90 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCCcccCCCCCCeEEEEEeecCCCCCCC-CceecCHHHHHhhhcCCCcEEEE
Q 038502 47 GQGTPNPCQGSSSVVVKIVDLCPAGSCR-GTIDLSQEAFASIADTACGVINI 97 (100)
Q Consensus 47 G~~i~~~~~~g~sv~v~V~D~Cp~~~C~-~~lDLS~~aF~~l~~~~~G~~~v 97 (100)
+.+|.... +++++.+.|++.=. -=. +.+-||..+|++|.-.+--.+.|
T Consensus 30 ~~rv~v~~-~~~~~~a~~~~~~~--~~~~~~~gl~~~~~~~l~~~~g~~v~v 78 (493)
T TIGR02645 30 QDRVEVRI-GGKSLIAILVGSDT--LVEMGEIGLSVSAVETFMAREGDIVTV 78 (493)
T ss_pred CCeEEEEe-CCEEEEEEEecccc--cccCCeeeccHHHHHHcCCCCCCEEEE
Confidence 44676666 88999998886322 223 88999999999996443333444
No 17
>PRK06911 rpsN 30S ribosomal protein S14; Reviewed
Probab=32.95 E-value=32 Score=22.03 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=32.0
Q ss_pred CCeEEEEEeecCCCCC---CC-CceecCHHHHHhhh--cCCCcEEEEEE
Q 038502 57 SSSVVVKIVDLCPAGS---CR-GTIDLSQEAFASIA--DTACGVINISY 99 (100)
Q Consensus 57 g~sv~v~V~D~Cp~~~---C~-~~lDLS~~aF~~l~--~~~~G~~~v~w 99 (100)
..+--+++.++|-.++ -. ..|-||.-.|.+++ .+-+|+..-+|
T Consensus 52 rnss~~R~rNRC~~TGR~Rgv~r~FgLsRi~~Rela~~G~lPGv~KaSW 100 (100)
T PRK06911 52 VNSNPVRYVTRCKQCGRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100 (100)
T ss_pred CccCcchhhcccCCCCCCcccccccCchHHHHHHHHHcCCCCCeecccC
Confidence 3456678888998421 12 78999999999997 45678888777
No 18
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=31.22 E-value=31 Score=20.31 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=29.8
Q ss_pred eEEEEEeecCCCCCCC------CceecCHHHHHhhhc--CCCcEEEEEE
Q 038502 59 SVVVKIVDLCPAGSCR------GTIDLSQEAFASIAD--TACGVINISY 99 (100)
Q Consensus 59 sv~v~V~D~Cp~~~C~------~~lDLS~~aF~~l~~--~~~G~~~v~w 99 (100)
+-.++..++|. .|. ..|-|+.-.|.++|. .-.|+..-+|
T Consensus 15 ~~~~r~~nRC~--~cGRprg~~Rkf~lcR~cfRE~A~~g~ipGv~K~sW 61 (61)
T COG0199 15 KSPGRGRNRCR--RCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKASW 61 (61)
T ss_pred Ccccccccccc--ccCCCccchhhhhhHHHHHHHHhhccCCCCeEeccC
Confidence 33456778888 776 569999999999985 4568887777
No 19
>CHL00074 rps14 ribosomal protein S14
Probab=28.62 E-value=23 Score=22.65 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCeEEEEEeecCCCCC---CC-CceecCHHHHHhhh--cCCCcEEEEEE
Q 038502 57 SSSVVVKIVDLCPAGS---CR-GTIDLSQEAFASIA--DTACGVINISY 99 (100)
Q Consensus 57 g~sv~v~V~D~Cp~~~---C~-~~lDLS~~aF~~l~--~~~~G~~~v~w 99 (100)
..+--++|.++|.-++ -. ..|-||.-.|.+++ ++-+|+..-+|
T Consensus 52 r~ss~tRi~NRC~~TGR~Rgv~r~F~LsRi~~Re~a~~G~ipGv~KaSW 100 (100)
T CHL00074 52 RNSAPTRLHNRCFLTGRPRGNYRDFGLSRHVLREMAHACLLPGVTKSSW 100 (100)
T ss_pred cccchHHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCcccccC
Confidence 3456678888998321 12 78999999999997 45678887777
No 20
>PRK08881 rpsN 30S ribosomal protein S14; Reviewed
Probab=26.65 E-value=30 Score=22.15 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCeEEEEEeecCCCCC---CC-CceecCHHHHHhhh--cCCCcEEEEEE
Q 038502 57 SSSVVVKIVDLCPAGS---CR-GTIDLSQEAFASIA--DTACGVINISY 99 (100)
Q Consensus 57 g~sv~v~V~D~Cp~~~---C~-~~lDLS~~aF~~l~--~~~~G~~~v~w 99 (100)
-.+--++|.++|.-++ -. ..|-||.-.|.+++ ++=+|+..-+|
T Consensus 53 r~ss~tRi~NRC~~TGR~Rgv~r~F~LsRi~fRela~~G~lpGv~KsSW 101 (101)
T PRK08881 53 RNSSPTRLRNRCELTGRPRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101 (101)
T ss_pred cccchHHHhccccCCCCCCccccCcCchHHHHHHHHHcCCCCCeecccC
Confidence 3455677888888321 12 88999999999997 45678888777
No 21
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=24.80 E-value=35 Score=22.56 Aligned_cols=14 Identities=29% Similarity=0.785 Sum_probs=9.6
Q ss_pred ecCCCCCCCCceecCH
Q 038502 66 DLCPAGSCRGTIDLSQ 81 (100)
Q Consensus 66 D~Cp~~~C~~~lDLS~ 81 (100)
|.|+ .|+..|-|.|
T Consensus 86 D~CM--~C~~pLTLd~ 99 (114)
T PF11023_consen 86 DACM--HCKEPLTLDP 99 (114)
T ss_pred hccC--cCCCcCccCc
Confidence 9999 9984444433
No 22
>PHA03078 transcriptional elongation factor; Provisional
Probab=21.58 E-value=35 Score=25.03 Aligned_cols=14 Identities=14% Similarity=0.325 Sum_probs=12.4
Q ss_pred CCCeEEEEEeecCC
Q 038502 56 GSSSVVVKIVDLCP 69 (100)
Q Consensus 56 ~g~sv~v~V~D~Cp 69 (100)
+.+.+.|.|||.|-
T Consensus 165 tN~~i~VvVTe~CI 178 (219)
T PHA03078 165 TNKDLDVVVTEKCI 178 (219)
T ss_pred cCCCceEEEeHHHH
Confidence 56799999999997
No 23
>PF05796 Chordopox_G2: Chordopoxvirus protein G2; InterPro: IPR008446 This family consists of several Chordopoxvirus isatin-beta-thiosemicarbazone dependent protein (protein G2) sequences. Inactivation of the gene coding for this protein renders the virus dependent upon isatin-beta-thiosemicarbazone (IBT) for growth [].
Probab=21.42 E-value=32 Score=25.17 Aligned_cols=29 Identities=14% Similarity=0.263 Sum_probs=18.4
Q ss_pred CCCeEEEEEeecCCCCCCC-CceecCHHHH
Q 038502 56 GSSSVVVKIVDLCPAGSCR-GTIDLSQEAF 84 (100)
Q Consensus 56 ~g~sv~v~V~D~Cp~~~C~-~~lDLS~~aF 84 (100)
+.+.+.|.|||.|-+.-=. .+.+|-...|
T Consensus 169 sN~~i~VvVTe~CI~~Ll~~~n~~ll~~lF 198 (216)
T PF05796_consen 169 SNQDIDVVVTEKCIDKLLQPQNAQLLKNLF 198 (216)
T ss_pred cCCcceEEehHHHHHHHhhhhhHHHHHHHH
Confidence 5679999999999721111 3455555555
No 24
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=21.31 E-value=1.4e+02 Score=15.44 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=14.1
Q ss_pred EEEeecCCCCCCCCceecCHHHHHhh
Q 038502 62 VKIVDLCPAGSCRGTIDLSQEAFASI 87 (100)
Q Consensus 62 v~V~D~Cp~~~C~~~lDLS~~aF~~l 87 (100)
-..+|.|| .|. .+=|...-|++|
T Consensus 16 ~~~id~C~--~C~-G~W~d~~el~~~ 38 (41)
T PF13453_consen 16 DVEIDVCP--SCG-GIWFDAGELEKL 38 (41)
T ss_pred CEEEEECC--CCC-eEEccHHHHHHH
Confidence 35679999 886 233345555554
Done!