Query 038503
Match_columns 107
No_of_seqs 154 out of 1037
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:42:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0811 SNARE protein PEP12/VA 99.9 6.2E-27 1.3E-31 170.5 13.8 105 2-106 159-264 (269)
2 KOG0810 SNARE protein Syntaxin 99.9 5.3E-26 1.1E-30 167.8 11.3 94 12-105 196-289 (297)
3 COG5325 t-SNARE complex subuni 99.9 8.8E-24 1.9E-28 152.8 12.9 105 1-105 174-278 (283)
4 KOG0809 SNARE protein TLG2/Syn 99.9 2.2E-23 4.7E-28 151.9 9.7 93 13-105 209-301 (305)
5 COG5074 t-SNARE complex subuni 99.8 8.9E-19 1.9E-23 124.6 11.5 94 11-104 174-267 (280)
6 KOG0812 SNARE protein SED5/Syn 99.7 5.1E-17 1.1E-21 118.4 12.8 97 2-105 211-307 (311)
7 PF05739 SNARE: SNARE domain; 99.7 8.1E-17 1.8E-21 93.9 10.3 63 19-81 1-63 (63)
8 cd00193 t_SNARE Soluble NSF (N 99.6 7.6E-15 1.7E-19 84.1 7.9 59 18-76 2-60 (60)
9 KOG3202 SNARE protein TLG1/Syn 99.6 1.8E-13 3.8E-18 98.4 13.8 97 8-105 138-234 (235)
10 smart00397 t_SNARE Helical reg 99.5 1E-13 2.2E-18 80.6 9.3 64 13-76 3-66 (66)
11 KOG3894 SNARE protein Syntaxin 99.2 5.5E-10 1.2E-14 82.7 12.5 97 2-98 212-308 (316)
12 KOG3385 V-SNARE [Intracellular 99.1 6.1E-10 1.3E-14 71.8 9.1 90 11-102 24-114 (118)
13 PF00957 Synaptobrevin: Synapt 98.2 0.0002 4.3E-09 44.1 12.8 52 22-73 3-54 (89)
14 KOG3065 SNAP-25 (synaptosome-a 97.9 7.6E-05 1.6E-09 55.1 8.2 57 19-75 215-271 (273)
15 KOG0860 Synaptobrevin/VAMP-lik 97.9 0.00099 2.1E-08 43.3 12.3 44 20-63 27-70 (116)
16 PF09753 Use1: Membrane fusion 97.6 0.0072 1.6E-07 43.9 14.4 52 25-76 170-221 (251)
17 KOG0811 SNARE protein PEP12/VA 97.1 0.043 9.2E-07 40.6 13.3 88 13-103 178-265 (269)
18 PF00957 Synaptobrevin: Synapt 97.0 0.035 7.6E-07 34.0 12.1 55 28-82 6-60 (89)
19 KOG0810 SNARE protein Syntaxin 96.9 0.044 9.6E-07 41.1 11.9 68 9-76 200-267 (297)
20 COG5074 t-SNARE complex subuni 96.6 0.086 1.9E-06 38.4 11.2 64 13-76 183-246 (280)
21 COG5325 t-SNARE complex subuni 96.5 0.15 3.2E-06 37.9 11.9 83 13-99 193-275 (283)
22 KOG1666 V-SNARE [Intracellular 95.8 0.47 1E-05 34.0 12.6 74 22-96 135-208 (220)
23 PF03908 Sec20: Sec20; InterP 95.6 0.29 6.2E-06 30.2 12.4 61 24-84 10-70 (92)
24 KOG3208 SNARE protein GS28 [In 95.2 0.62 1.4E-05 33.6 10.6 80 23-107 150-229 (231)
25 PF12352 V-SNARE_C: Snare regi 95.1 0.32 6.8E-06 28.0 10.1 57 23-79 9-65 (66)
26 KOG2678 Predicted membrane pro 95.1 0.88 1.9E-05 33.0 13.6 67 33-101 166-232 (244)
27 PF11166 DUF2951: Protein of u 94.5 0.7 1.5E-05 29.0 12.0 81 19-102 8-89 (98)
28 PF09753 Use1: Membrane fusion 94.3 1.4 3E-05 31.9 11.3 58 25-85 166-227 (251)
29 KOG3251 Golgi SNAP receptor co 93.4 2.1 4.5E-05 30.7 10.8 77 23-99 130-206 (213)
30 KOG0809 SNARE protein TLG2/Syn 93.3 2.1 4.5E-05 32.2 10.1 86 20-105 209-298 (305)
31 PF09889 DUF2116: Uncharacteri 92.5 0.43 9.4E-06 27.4 4.5 24 79-102 31-54 (59)
32 PF05478 Prominin: Prominin; 91.7 7.4 0.00016 33.0 12.9 25 55-79 388-412 (806)
33 KOG0860 Synaptobrevin/VAMP-lik 91.6 2.6 5.7E-05 27.4 11.3 6 68-73 78-83 (116)
34 PF04102 SlyX: SlyX; InterPro 91.1 2 4.3E-05 25.2 6.9 50 21-70 3-52 (69)
35 PRK11637 AmiB activator; Provi 89.7 8.2 0.00018 30.1 12.2 51 24-74 77-127 (428)
36 KOG3065 SNAP-25 (synaptosome-a 89.1 7.6 0.00017 28.9 9.7 50 30-79 87-136 (273)
37 PF06072 Herpes_US9: Alphaherp 89.0 1.7 3.8E-05 24.9 4.8 14 67-80 9-22 (60)
38 PF03904 DUF334: Domain of unk 88.0 8.3 0.00018 28.0 13.1 76 18-95 67-158 (230)
39 PF07889 DUF1664: Protein of u 88.0 5.2 0.00011 26.4 7.2 52 22-73 68-119 (126)
40 PF10779 XhlA: Haemolysin XhlA 87.7 3.9 8.5E-05 24.0 10.1 38 42-79 12-49 (71)
41 PF12325 TMF_TATA_bd: TATA ele 87.7 1.5 3.2E-05 28.7 4.5 37 4-40 78-114 (120)
42 PRK00295 hypothetical protein; 86.4 4.8 0.0001 23.6 7.8 47 23-69 6-52 (68)
43 PF09548 Spore_III_AB: Stage I 85.8 4.3 9.2E-05 27.8 6.2 36 66-101 133-168 (170)
44 TIGR02833 spore_III_AB stage I 85.5 4.5 9.7E-05 27.8 6.2 34 67-100 134-167 (170)
45 PRK08307 stage III sporulation 85.4 4.5 9.7E-05 27.8 6.2 34 67-100 135-168 (171)
46 PF05478 Prominin: Prominin; 85.2 22 0.00048 30.2 13.3 37 33-69 361-398 (806)
47 PRK02793 phi X174 lysis protei 85.2 5.8 0.00013 23.5 7.8 48 21-68 7-54 (72)
48 PRK04325 hypothetical protein; 85.2 6 0.00013 23.6 7.8 48 22-69 9-56 (74)
49 PRK00736 hypothetical protein; 84.9 5.8 0.00013 23.2 7.8 47 22-68 5-51 (68)
50 PRK02119 hypothetical protein; 84.9 6.1 0.00013 23.5 8.0 51 18-68 5-55 (73)
51 PRK11637 AmiB activator; Provi 84.6 17 0.00037 28.3 12.4 74 6-79 52-125 (428)
52 PF04505 Dispanin: Interferon- 84.2 0.77 1.7E-05 27.9 1.7 32 62-93 42-73 (82)
53 PF01519 DUF16: Protein of unk 83.0 9.7 0.00021 24.3 9.2 49 19-67 50-98 (102)
54 PLN03160 uncharacterized prote 82.9 0.74 1.6E-05 32.9 1.5 8 99-106 51-58 (219)
55 KOG3894 SNARE protein Syntaxin 81.2 22 0.00047 27.1 12.1 82 26-107 226-313 (316)
56 PF00523 Fusion_gly: Fusion gl 80.8 3.6 7.8E-05 33.0 4.8 33 51-84 433-465 (490)
57 KOG0859 Synaptobrevin/VAMP-lik 80.8 6.6 0.00014 28.1 5.5 28 24-51 127-154 (217)
58 PF01601 Corona_S2: Coronaviru 80.5 0.54 1.2E-05 38.4 0.1 45 62-107 523-567 (610)
59 PHA02844 putative transmembran 80.5 3.5 7.6E-05 24.7 3.5 20 85-104 47-66 (75)
60 PF00523 Fusion_gly: Fusion gl 79.9 1.7 3.7E-05 34.8 2.7 31 49-79 437-467 (490)
61 PF02346 Vac_Fusion: Chordopox 79.7 9.1 0.0002 21.8 6.5 47 23-69 2-48 (57)
62 PF11239 DUF3040: Protein of u 79.0 5.4 0.00012 24.0 4.2 23 50-72 9-31 (82)
63 PHA02650 hypothetical protein; 78.8 4.1 8.9E-05 24.7 3.5 21 84-104 47-67 (81)
64 PHA03054 IMV membrane protein; 78.7 4.4 9.6E-05 24.1 3.5 19 86-104 48-66 (72)
65 cd00193 t_SNARE Soluble NSF (N 78.6 8.4 0.00018 20.8 8.6 55 27-81 4-58 (60)
66 PHA02819 hypothetical protein; 78.2 4.7 0.0001 23.9 3.5 19 86-104 46-64 (71)
67 PF07432 Hc1: Histone H1-like 77.5 17 0.00037 23.7 6.5 46 34-79 2-47 (123)
68 PRK00846 hypothetical protein; 77.3 13 0.00029 22.4 7.8 48 22-69 13-60 (77)
69 KOG3202 SNARE protein TLG1/Syn 76.7 26 0.00057 25.5 9.7 64 44-107 146-233 (235)
70 PHA02975 hypothetical protein; 76.7 6 0.00013 23.4 3.7 23 82-104 40-62 (69)
71 PRK13673 hypothetical protein; 76.4 8.9 0.00019 25.0 4.8 37 69-105 75-111 (118)
72 PF09889 DUF2116: Uncharacteri 76.4 8.3 0.00018 22.1 4.2 32 70-101 25-56 (59)
73 PRK04406 hypothetical protein; 75.7 14 0.00031 22.0 8.4 48 21-68 10-57 (75)
74 PF01519 DUF16: Protein of unk 75.3 18 0.0004 23.0 7.0 57 19-75 34-92 (102)
75 PF05739 SNARE: SNARE domain; 74.3 13 0.00027 20.7 9.0 54 29-82 4-57 (63)
76 PRK15136 multidrug efflux syst 72.5 4.1 8.8E-05 31.4 2.9 14 83-96 18-31 (390)
77 PF11657 Activator-TraM: Trans 72.0 27 0.0006 23.5 14.9 21 6-26 37-57 (144)
78 PF11190 DUF2976: Protein of u 71.4 19 0.00041 22.2 5.2 44 62-107 36-79 (87)
79 PRK15041 methyl-accepting chem 71.2 52 0.0011 26.4 11.4 57 12-68 430-486 (554)
80 PF13829 DUF4191: Domain of un 71.0 8.9 0.00019 27.8 4.2 21 68-88 8-28 (224)
81 PHA02414 hypothetical protein 70.3 25 0.00054 22.3 8.7 76 24-103 31-109 (111)
82 PF04728 LPP: Lipoprotein leuc 69.9 18 0.00039 20.5 6.9 46 23-75 4-49 (56)
83 PHA03240 envelope glycoprotein 69.8 4.5 9.7E-05 29.3 2.4 20 83-102 210-229 (258)
84 PRK10856 cytoskeletal protein 69.3 5.1 0.00011 30.5 2.8 11 87-97 114-124 (331)
85 PF05377 FlaC_arch: Flagella a 69.0 19 0.0004 20.4 5.9 9 51-59 29-37 (55)
86 PHA02692 hypothetical protein; 68.4 10 0.00022 22.5 3.4 12 93-104 53-64 (70)
87 COG4942 Membrane-bound metallo 68.2 59 0.0013 25.8 10.0 61 17-77 40-100 (420)
88 PF11598 COMP: Cartilage oligo 68.2 17 0.00037 19.7 4.1 28 25-52 4-31 (45)
89 smart00502 BBC B-Box C-termina 68.1 26 0.00056 21.6 8.7 52 26-77 36-88 (127)
90 PF09548 Spore_III_AB: Stage I 67.6 35 0.00075 23.2 6.5 43 57-99 127-169 (170)
91 PRK09793 methyl-accepting prot 67.5 62 0.0013 25.8 11.4 57 14-70 428-484 (533)
92 PRK15048 methyl-accepting chem 67.0 63 0.0014 25.7 11.4 55 14-68 430-484 (553)
93 PF06072 Herpes_US9: Alphaherp 65.7 24 0.00051 20.3 5.3 13 59-71 8-20 (60)
94 smart00397 t_SNARE Helical reg 64.9 21 0.00045 19.4 9.5 59 22-80 5-63 (66)
95 KOG2678 Predicted membrane pro 64.9 52 0.0011 24.0 10.6 77 26-105 155-232 (244)
96 PF04728 LPP: Lipoprotein leuc 64.6 24 0.00052 20.0 8.9 41 39-79 6-46 (56)
97 KOG2546 Abl interactor ABI-1, 63.8 55 0.0012 26.2 7.5 53 15-67 48-100 (483)
98 PF00015 MCPsignal: Methyl-acc 63.4 44 0.00095 22.6 12.4 65 13-77 126-190 (213)
99 PRK10884 SH3 domain-containing 63.2 52 0.0011 23.4 13.1 40 36-75 118-157 (206)
100 PHA02675 ORF104 fusion protein 62.9 33 0.00072 21.1 7.5 45 26-70 34-78 (90)
101 PF03908 Sec20: Sec20; InterP 62.5 33 0.00071 20.9 11.7 73 34-107 10-89 (92)
102 PRK09400 secE preprotein trans 61.9 28 0.00061 19.9 5.3 30 57-86 5-34 (61)
103 PTZ00478 Sec superfamily; Prov 61.7 34 0.00075 20.9 5.4 36 53-88 14-49 (81)
104 KOG0812 SNARE protein SED5/Syn 61.0 71 0.0015 24.2 11.7 53 21-73 233-285 (311)
105 PF06143 Baculo_11_kDa: Baculo 60.8 14 0.00031 22.7 3.1 10 70-79 19-28 (84)
106 PF07457 DUF1516: Protein of u 59.9 22 0.00048 22.8 4.1 31 68-98 76-106 (110)
107 PF04210 MtrG: Tetrahydrometha 59.7 35 0.00075 20.2 8.1 19 55-73 17-35 (70)
108 COG4238 Murein lipoprotein [Ce 59.4 37 0.0008 20.5 6.5 40 40-79 29-68 (78)
109 PF05957 DUF883: Bacterial pro 58.5 39 0.00085 20.5 11.7 44 28-71 8-52 (94)
110 PF14992 TMCO5: TMCO5 family 58.2 77 0.0017 23.8 14.0 61 8-68 116-176 (280)
111 PF11945 WASH_WAHD: WAHD domai 56.3 85 0.0018 23.7 7.3 36 34-69 34-69 (297)
112 PF11812 DUF3333: Domain of un 55.9 28 0.0006 23.7 4.2 15 89-103 20-34 (155)
113 PF00517 GP41: Retroviral enve 54.4 48 0.001 23.4 5.4 17 85-101 152-168 (204)
114 PF06195 DUF996: Protein of un 54.2 62 0.0013 21.5 6.2 44 64-107 93-138 (139)
115 PF02009 Rifin_STEVOR: Rifin/s 54.1 12 0.00026 28.3 2.4 17 91-107 263-279 (299)
116 PF07544 Med9: RNA polymerase 53.4 38 0.00083 20.4 4.2 27 41-67 50-76 (83)
117 PF08317 Spc7: Spc7 kinetochor 53.3 95 0.0021 23.4 9.9 63 22-84 209-271 (325)
118 PF12718 Tropomyosin_1: Tropom 52.5 67 0.0015 21.4 11.4 65 17-81 44-111 (143)
119 COG4942 Membrane-bound metallo 52.3 1.2E+02 0.0026 24.2 10.4 67 3-69 40-106 (420)
120 KOG0859 Synaptobrevin/VAMP-lik 52.1 59 0.0013 23.4 5.4 13 48-60 138-150 (217)
121 PF13198 DUF4014: Protein of u 52.1 26 0.00055 20.9 3.1 9 78-86 8-16 (72)
122 PF06388 DUF1075: Protein of u 51.9 32 0.0007 23.3 4.0 24 82-105 90-113 (146)
123 PF13060 DUF3921: Protein of u 51.7 39 0.00085 18.7 3.6 26 33-58 12-37 (58)
124 PF05531 NPV_P10: Nucleopolyhe 51.7 51 0.0011 19.8 6.4 51 14-64 10-63 (75)
125 PF09125 COX2-transmemb: Cytoc 51.7 32 0.0007 17.8 3.0 11 87-97 15-25 (38)
126 COG4640 Predicted membrane pro 51.6 21 0.00045 28.3 3.4 16 67-82 30-45 (465)
127 PF08317 Spc7: Spc7 kinetochor 51.3 1E+02 0.0022 23.2 9.5 71 3-73 211-281 (325)
128 PF07798 DUF1640: Protein of u 50.4 79 0.0017 21.6 13.8 56 51-107 121-176 (177)
129 KOG1693 emp24/gp25L/p24 family 50.1 93 0.002 22.3 6.7 26 55-80 132-157 (209)
130 PF00584 SecE: SecE/Sec61-gamm 50.1 43 0.00092 18.4 3.8 18 64-81 4-21 (57)
131 PF03597 CcoS: Cytochrome oxid 50.0 26 0.00055 18.9 2.7 18 90-107 6-23 (45)
132 PF15106 TMEM156: TMEM156 prot 49.7 23 0.0005 25.6 3.1 14 84-97 174-187 (226)
133 PRK09731 putative general secr 49.7 31 0.00067 24.1 3.7 41 65-107 17-57 (178)
134 PF02167 Cytochrom_C1: Cytochr 49.4 74 0.0016 22.9 5.8 42 61-102 167-208 (219)
135 PF06789 UPF0258: Uncharacteri 49.0 11 0.00025 25.7 1.4 17 69-85 115-131 (159)
136 TIGR03503 conserved hypothetic 48.7 30 0.00065 27.0 3.9 11 84-94 344-354 (374)
137 KOG0862 Synaptobrevin/VAMP-lik 47.9 1E+02 0.0023 22.2 10.0 33 25-57 137-169 (216)
138 TIGR00327 secE_euk_arch protei 47.6 54 0.0012 18.8 4.5 26 60-85 4-29 (61)
139 PF02255 PTS_IIA: PTS system, 47.1 32 0.00069 21.4 3.2 26 56-81 27-52 (96)
140 PHA02673 ORF109 EEV glycoprote 46.9 30 0.00064 23.8 3.2 10 76-85 21-30 (161)
141 TIGR00847 ccoS cytochrome oxid 46.4 33 0.00072 19.0 2.8 17 91-107 8-24 (51)
142 PF10749 DUF2534: Protein of u 46.4 35 0.00077 20.9 3.2 16 82-97 11-26 (85)
143 PF13870 DUF4201: Domain of un 46.1 92 0.002 21.1 11.9 66 12-77 53-118 (177)
144 PRK10600 nitrate/nitrite senso 46.1 1.5E+02 0.0032 23.7 7.6 48 32-79 178-225 (569)
145 PF04740 LXG: LXG domain of WX 46.1 95 0.0021 21.2 9.1 56 25-80 113-168 (204)
146 PF05008 V-SNARE: Vesicle tran 46.0 59 0.0013 18.8 8.3 29 18-46 21-49 (79)
147 PF01105 EMP24_GP25L: emp24/gp 45.8 6.8 0.00015 25.9 0.0 22 51-72 113-134 (183)
148 PF00429 TLV_coat: ENV polypro 45.4 1.7E+02 0.0037 24.0 8.2 41 13-53 426-466 (561)
149 PRK13865 type IV secretion sys 44.9 1.2E+02 0.0025 21.9 6.7 11 82-92 35-45 (229)
150 TIGR01149 mtrG N5-methyltetrah 44.9 66 0.0014 19.1 8.0 12 51-62 20-31 (70)
151 cd00215 PTS_IIA_lac PTS_IIA, P 44.9 34 0.00074 21.4 3.1 26 56-81 28-53 (97)
152 PRK01026 tetrahydromethanopter 44.8 70 0.0015 19.3 8.0 15 59-73 24-38 (77)
153 PF03408 Foamy_virus_ENV: Foam 44.7 49 0.0011 28.6 4.7 24 81-104 57-80 (981)
154 PRK11677 hypothetical protein; 44.6 93 0.002 20.7 9.1 52 24-75 35-86 (134)
155 PRK10884 SH3 domain-containing 44.5 1.1E+02 0.0025 21.7 13.6 16 58-73 147-162 (206)
156 PF02050 FliJ: Flagellar FliJ 44.4 70 0.0015 19.3 10.8 43 37-79 53-95 (123)
157 PF06738 DUF1212: Protein of u 44.4 57 0.0012 22.2 4.5 37 50-86 68-104 (193)
158 PF11837 DUF3357: Domain of un 44.4 7.4 0.00016 24.7 0.0 13 86-98 28-40 (106)
159 PF05393 Hum_adeno_E3A: Human 44.3 29 0.00063 21.6 2.6 17 87-103 35-51 (94)
160 PRK09973 putative outer membra 44.3 75 0.0016 19.5 6.6 35 45-79 33-67 (85)
161 PF09577 Spore_YpjB: Sporulati 44.1 1.2E+02 0.0027 22.0 6.4 21 86-107 199-219 (232)
162 COG2443 Sss1 Preprotein transl 44.0 66 0.0014 18.8 5.7 26 54-79 3-28 (65)
163 PF14979 TMEM52: Transmembrane 43.7 32 0.0007 23.4 3.0 20 86-105 18-37 (154)
164 PF15188 CCDC-167: Coiled-coil 42.8 79 0.0017 19.4 9.1 31 55-88 41-71 (85)
165 PF10498 IFT57: Intra-flagella 42.7 1.6E+02 0.0034 22.8 7.6 64 5-68 245-319 (359)
166 PF07260 ANKH: Progressive ank 42.6 63 0.0014 24.9 4.7 38 70-107 69-106 (345)
167 TIGR03745 conj_TIGR03745 integ 42.4 66 0.0014 20.6 4.1 45 61-105 51-96 (104)
168 PRK15396 murein lipoprotein; P 42.4 77 0.0017 19.1 6.7 17 58-74 54-70 (78)
169 PF12911 OppC_N: N-terminal TM 42.2 57 0.0012 17.5 4.7 11 75-85 7-17 (56)
170 PF13124 DUF3963: Protein of u 41.6 53 0.0011 17.0 3.0 13 80-92 17-29 (40)
171 PF14812 PBP1_TM: Transmembran 41.4 1.1 2.3E-05 27.5 -4.0 8 82-89 63-70 (81)
172 COG3736 VirB8 Type IV secretor 41.0 1.3E+02 0.0028 22.1 5.9 30 68-98 25-54 (239)
173 PF07889 DUF1664: Protein of u 41.0 1E+02 0.0023 20.2 10.6 38 42-79 74-111 (126)
174 PRK09039 hypothetical protein; 40.0 1.7E+02 0.0036 22.4 11.7 67 4-70 119-185 (343)
175 TIGR03513 GldL_gliding gliding 39.9 1.4E+02 0.003 21.4 10.0 61 18-78 133-193 (202)
176 PRK10361 DNA recombination pro 39.7 2E+02 0.0044 23.2 8.2 57 19-75 363-419 (475)
177 TIGR00823 EIIA-LAC phosphotran 39.5 46 0.001 20.9 3.1 26 56-81 30-55 (99)
178 PHA03011 hypothetical protein; 39.2 84 0.0018 20.1 4.2 35 25-59 81-115 (120)
179 COG2857 CYT1 Cytochrome c1 [En 39.0 24 0.00051 25.8 1.9 45 58-102 194-238 (250)
180 KOG3498 Preprotein translocase 39.0 82 0.0018 18.4 4.9 26 53-78 2-27 (67)
181 PF11119 DUF2633: Protein of u 39.0 49 0.0011 19.0 2.8 12 86-97 10-21 (59)
182 COG4372 Uncharacterized protei 38.8 2E+02 0.0044 23.0 10.4 50 27-80 236-285 (499)
183 PRK10404 hypothetical protein; 38.8 1E+02 0.0022 19.4 12.1 75 27-104 14-97 (101)
184 PRK09591 celC cellobiose phosp 38.7 48 0.001 21.0 3.1 26 56-81 33-58 (104)
185 COG3883 Uncharacterized protei 38.3 1.7E+02 0.0036 21.8 11.8 68 10-77 33-100 (265)
186 KOG1666 V-SNARE [Intracellular 38.3 1.5E+02 0.0033 21.4 12.7 63 25-88 128-194 (220)
187 COG1580 FliL Flagellar basal b 37.8 27 0.00059 23.9 2.0 10 86-95 17-26 (159)
188 KOG4677 Golgi integral membran 37.6 2.2E+02 0.0049 23.1 9.0 45 58-102 502-547 (554)
189 smart00503 SynN Syntaxin N-ter 37.1 99 0.0022 18.9 8.7 62 16-77 9-70 (117)
190 PHA03046 Hypothetical protein; 37.1 1.3E+02 0.0028 20.2 8.2 56 14-69 76-131 (142)
191 PRK10454 PTS system N,N'-diace 36.9 56 0.0012 21.1 3.2 26 56-81 44-69 (115)
192 PRK08307 stage III sporulation 36.8 1.4E+02 0.003 20.4 6.3 23 65-87 136-158 (171)
193 COG5278 Predicted periplasmic 36.6 1.6E+02 0.0034 21.1 10.6 31 77-107 174-204 (207)
194 PF10186 Atg14: UV radiation r 36.3 1.6E+02 0.0035 21.1 12.6 21 55-75 117-137 (302)
195 PF13038 DUF3899: Domain of un 36.2 78 0.0017 19.0 3.7 13 52-64 27-39 (92)
196 PRK01844 hypothetical protein; 36.2 74 0.0016 19.0 3.4 8 87-94 5-12 (72)
197 cd00179 SynN Syntaxin N-termin 36.0 1.2E+02 0.0026 19.5 8.8 61 17-77 8-68 (151)
198 PF05624 LSR: Lipolysis stimul 35.8 42 0.00092 18.3 2.1 17 91-107 7-23 (49)
199 KOG3251 Golgi SNAP receptor co 35.6 1.7E+02 0.0037 21.1 8.8 59 49-107 135-211 (213)
200 PHA02141 hypothetical protein 35.6 80 0.0017 19.6 3.6 28 38-65 22-49 (105)
201 COG2900 SlyX Uncharacterized p 35.2 1E+02 0.0022 18.4 7.7 48 21-68 7-54 (72)
202 PF00858 ASC: Amiloride-sensit 34.8 45 0.00097 25.2 3.0 26 82-107 20-45 (439)
203 PRK12800 fliF flagellar MS-rin 34.7 1.7E+02 0.0037 24.1 6.4 6 102-107 47-52 (574)
204 KOG3950 Gamma/delta sarcoglyca 34.6 51 0.0011 24.5 3.0 12 83-94 32-43 (292)
205 PF02038 ATP1G1_PLM_MAT8: ATP1 34.2 76 0.0017 17.6 3.0 14 92-105 19-32 (50)
206 TIGR01478 STEVOR variant surfa 33.9 42 0.00091 25.3 2.5 12 96-107 270-281 (295)
207 PF14316 DUF4381: Domain of un 33.8 49 0.0011 21.8 2.7 18 87-104 22-39 (146)
208 PF08614 ATG16: Autophagy prot 33.5 1.6E+02 0.0035 20.3 9.9 70 7-76 101-170 (194)
209 PRK14710 hypothetical protein; 33.4 75 0.0016 19.0 3.1 13 92-104 14-26 (86)
210 PTZ00046 rifin; Provisional 33.3 2.3E+02 0.0051 22.1 8.4 14 91-104 319-332 (358)
211 PHA02690 hypothetical protein; 33.2 1.2E+02 0.0025 18.6 6.4 18 53-70 11-28 (90)
212 PTZ00370 STEVOR; Provisional 32.9 44 0.00096 25.2 2.5 12 96-107 266-277 (296)
213 COG1459 PulF Type II secretory 32.9 2.4E+02 0.0052 22.1 7.3 28 38-65 107-134 (397)
214 PF06422 PDR_CDR: CDR ABC tran 32.8 95 0.0021 19.3 3.8 18 68-85 32-49 (103)
215 COG0840 Tar Methyl-accepting c 32.7 2.1E+02 0.0046 21.4 11.5 53 18-70 327-379 (408)
216 PF02009 Rifin_STEVOR: Rifin/s 32.7 1.9E+02 0.004 21.9 5.9 18 89-106 258-275 (299)
217 PRK11466 hybrid sensory histid 32.4 3.1E+02 0.0067 23.1 12.9 12 83-94 329-340 (914)
218 PF09472 MtrF: Tetrahydrometha 32.2 1.1E+02 0.0023 17.8 6.3 23 85-107 42-64 (64)
219 PF08650 DASH_Dad4: DASH compl 31.8 1.2E+02 0.0025 18.1 5.0 33 47-79 8-40 (72)
220 COG1579 Zn-ribbon protein, pos 31.8 2.1E+02 0.0045 21.0 9.9 69 5-73 14-82 (239)
221 COG1447 CelC Phosphotransferas 31.6 74 0.0016 20.3 3.1 26 56-81 32-57 (105)
222 PF01998 DUF131: Protein of un 31.4 1.1E+02 0.0024 17.7 3.6 20 87-106 44-63 (64)
223 KOG2196 Nuclear porin [Nuclear 31.1 2.2E+02 0.0048 21.1 7.8 32 51-82 179-210 (254)
224 PRK04406 hypothetical protein; 30.9 1.2E+02 0.0026 18.0 8.1 51 28-78 3-53 (75)
225 KOG3684 Ca2+-activated K+ chan 30.8 2.9E+02 0.0064 22.4 8.4 47 28-74 419-465 (489)
226 smart00787 Spc7 Spc7 kinetocho 30.6 2.4E+02 0.0052 21.3 11.8 63 23-85 205-267 (312)
227 TIGR01000 bacteriocin_acc bact 30.5 81 0.0017 24.7 3.8 27 78-104 11-37 (457)
228 PF13758 Prefoldin_3: Prefoldi 30.2 77 0.0017 20.1 3.0 33 46-78 64-96 (99)
229 COG1340 Uncharacterized archae 30.1 2.5E+02 0.0053 21.3 11.9 58 6-63 184-241 (294)
230 COG3197 FixS Uncharacterized p 30.0 47 0.001 19.0 1.8 17 91-107 8-24 (58)
231 COG3162 Predicted membrane pro 29.9 1.5E+02 0.0032 18.9 4.1 26 78-103 17-42 (102)
232 TIGR03758 conj_TIGR03758 integ 29.7 58 0.0013 19.0 2.2 20 88-107 18-37 (65)
233 PRK04654 sec-independent trans 29.5 2.2E+02 0.0048 20.6 8.9 53 26-78 31-89 (214)
234 TIGR01477 RIFIN variant surfac 29.5 2.7E+02 0.0059 21.6 8.4 10 93-102 316-325 (353)
235 PF05384 DegS: Sensor protein 29.4 1.9E+02 0.0041 19.8 10.0 61 9-69 88-152 (159)
236 PRK15041 methyl-accepting chem 28.9 3.1E+02 0.0067 22.1 10.6 44 23-66 273-316 (554)
237 PF08006 DUF1700: Protein of u 28.9 1.9E+02 0.0041 19.6 9.1 13 34-46 22-34 (181)
238 PF10158 LOH1CR12: Tumour supp 28.8 1.8E+02 0.0038 19.2 8.2 23 52-74 89-111 (131)
239 PF04678 DUF607: Protein of un 28.6 2E+02 0.0043 19.7 9.7 27 81-107 89-115 (180)
240 PF10046 BLOC1_2: Biogenesis o 28.5 1.5E+02 0.0032 18.3 9.3 35 24-62 44-78 (99)
241 COG1459 PulF Type II secretory 28.4 2.9E+02 0.0063 21.6 6.7 43 26-68 109-151 (397)
242 PRK09793 methyl-accepting prot 28.3 3.1E+02 0.0067 21.9 10.7 45 25-69 271-315 (533)
243 PF03356 Pox_LP_H2: Viral late 28.3 99 0.0022 21.7 3.5 17 91-107 31-47 (189)
244 PF06295 DUF1043: Protein of u 28.2 1.7E+02 0.0038 18.9 8.8 50 25-74 32-81 (128)
245 PF04888 SseC: Secretion syste 28.1 2.5E+02 0.0054 20.7 8.0 32 24-55 271-302 (306)
246 PRK00720 tatA twin arginine tr 27.9 71 0.0015 19.3 2.4 12 90-101 9-20 (78)
247 PF05781 MRVI1: MRVI1 protein; 27.8 3.2E+02 0.0069 22.5 6.7 44 58-104 454-497 (538)
248 PRK00523 hypothetical protein; 27.8 1.2E+02 0.0027 18.0 3.4 7 88-94 7-13 (72)
249 PRK10582 cytochrome o ubiquino 27.6 88 0.0019 20.0 3.0 23 85-107 75-97 (109)
250 PF04906 Tweety: Tweety; Inte 27.6 3E+02 0.0065 21.5 10.0 9 71-79 176-184 (406)
251 PF07011 DUF1313: Protein of u 27.4 1E+02 0.0023 19.0 3.1 22 24-45 51-72 (87)
252 KOG0994 Extracellular matrix g 27.2 5.1E+02 0.011 24.1 8.6 65 15-79 1204-1275(1758)
253 PF04888 SseC: Secretion syste 27.2 2.6E+02 0.0056 20.6 7.5 20 63-82 36-55 (306)
254 PRK15048 methyl-accepting chem 27.0 3.2E+02 0.007 21.7 10.7 42 25-66 273-314 (553)
255 PRK10132 hypothetical protein; 26.9 1.7E+02 0.0038 18.6 12.4 16 52-67 47-62 (108)
256 PF08173 YbgT_YccB: Membrane b 26.8 89 0.0019 15.1 2.5 9 88-96 2-10 (28)
257 PF10140 YukC: WXG100 protein 26.8 32 0.00069 26.6 0.9 30 71-100 181-210 (359)
258 KOG4112 Signal peptidase subun 26.7 1.1E+02 0.0024 19.3 3.2 24 81-104 22-45 (101)
259 PF12777 MT: Microtubule-bindi 26.7 2.8E+02 0.0062 21.0 7.7 58 7-71 227-284 (344)
260 KOG1326 Membrane-associated pr 26.7 82 0.0018 27.9 3.4 23 83-105 1069-1091(1105)
261 PF09788 Tmemb_55A: Transmembr 26.5 89 0.0019 23.2 3.1 16 88-103 198-213 (256)
262 PF04639 Baculo_E56: Baculovir 26.3 64 0.0014 24.4 2.4 22 84-105 275-296 (305)
263 PF06814 Lung_7-TM_R: Lung sev 26.3 2.6E+02 0.0057 20.4 5.8 15 67-81 210-224 (295)
264 COG1766 fliF Flagellar basal b 26.3 1.7E+02 0.0038 24.0 5.0 25 83-107 20-44 (545)
265 PF05615 THOC7: Tho complex su 26.2 1.9E+02 0.0041 18.7 9.4 59 23-81 54-112 (139)
266 KOG3637 Vitronectin receptor, 26.2 44 0.00096 29.5 1.8 22 86-107 979-1000(1030)
267 PF13937 DUF4212: Domain of un 26.1 1.3E+02 0.0029 18.2 3.4 27 75-101 2-28 (81)
268 PF11286 DUF3087: Protein of u 26.1 1.5E+02 0.0032 20.6 4.0 23 78-100 10-32 (165)
269 KOG3557 Epidermal growth facto 26.1 2.5E+02 0.0053 23.9 5.8 26 21-46 260-285 (721)
270 COG3152 Predicted membrane pro 26.1 1.1E+02 0.0024 20.0 3.3 19 81-99 17-35 (125)
271 PRK07193 fliF flagellar MS-rin 26.0 2.5E+02 0.0054 23.1 5.9 8 100-107 40-47 (552)
272 PRK02958 tatA twin arginine tr 26.0 81 0.0017 18.8 2.4 10 91-100 10-19 (73)
273 PF03581 Herpes_UL33: Herpesvi 25.9 1.3E+02 0.0029 18.0 3.3 27 13-39 48-74 (75)
274 PF11293 DUF3094: Protein of u 25.9 1.1E+02 0.0023 17.3 2.7 17 88-104 31-47 (55)
275 PF10498 IFT57: Intra-flagella 25.9 3.1E+02 0.0068 21.2 10.1 53 23-75 253-305 (359)
276 PF14728 PHTB1_C: PTHB1 C-term 25.9 3.2E+02 0.007 21.3 12.5 75 12-86 208-283 (377)
277 PRK06007 fliF flagellar MS-rin 25.9 2.3E+02 0.0049 23.2 5.6 6 71-76 10-15 (542)
278 TIGR02106 cyd_oper_ybgT cyd op 25.4 99 0.0022 15.2 2.5 9 88-96 2-10 (30)
279 COG3125 CyoD Heme/copper-type 25.4 71 0.0015 20.6 2.2 25 83-107 75-99 (111)
280 COG0497 RecN ATPase involved i 25.3 4E+02 0.0086 22.1 8.3 65 14-82 299-367 (557)
281 PRK11901 hypothetical protein; 25.2 86 0.0019 24.1 3.0 15 87-101 38-52 (327)
282 KOG4111 Translocase of outer m 25.0 2.2E+02 0.0048 19.1 5.5 27 77-103 75-101 (136)
283 KOG0614 cGMP-dependent protein 24.9 3.4E+02 0.0074 22.8 6.4 45 5-49 28-72 (732)
284 PF07160 DUF1395: Protein of u 24.9 2.8E+02 0.006 20.2 8.5 48 23-70 23-70 (243)
285 KOG0243 Kinesin-like protein [ 24.9 5.1E+02 0.011 23.3 11.5 27 13-39 446-472 (1041)
286 TIGR03503 conserved hypothetic 24.8 79 0.0017 24.7 2.8 18 81-98 344-361 (374)
287 COG1426 Predicted transcriptio 24.8 95 0.0021 23.1 3.1 24 79-102 95-118 (284)
288 TIGR02847 CyoD cytochrome o ub 24.7 1.1E+02 0.0024 19.1 3.0 24 84-107 63-86 (96)
289 PF10234 Cluap1: Clusterin-ass 24.6 3E+02 0.0065 20.5 9.0 58 20-80 156-213 (267)
290 PRK10869 recombination and rep 24.6 3.9E+02 0.0084 21.8 8.3 63 15-81 299-365 (553)
291 PF04791 LMBR1: LMBR1-like mem 24.5 3.4E+02 0.0074 21.1 12.1 14 94-107 328-341 (471)
292 PF10154 DUF2362: Uncharacteri 24.5 4E+02 0.0086 21.8 9.3 56 3-58 109-175 (510)
293 COG5375 Uncharacterized protei 24.4 92 0.002 22.5 2.8 36 72-107 21-56 (216)
294 KOG3443 Uncharacterized conser 24.4 2.6E+02 0.0055 19.6 6.1 49 33-81 23-73 (184)
295 COG3763 Uncharacterized protei 24.2 1.6E+02 0.0035 17.5 3.4 9 88-96 6-14 (71)
296 PF15176 LRR19-TM: Leucine-ric 24.2 1.3E+02 0.0028 19.2 3.1 22 83-104 14-35 (102)
297 PF04912 Dynamitin: Dynamitin 23.9 3.4E+02 0.0074 20.9 9.6 49 21-69 328-376 (388)
298 PF14523 Syntaxin_2: Syntaxin- 23.8 1.7E+02 0.0038 17.5 7.0 52 24-76 5-56 (102)
299 KOG3385 V-SNARE [Intracellular 23.7 2.2E+02 0.0048 18.6 7.1 51 31-81 38-88 (118)
300 PF05377 FlaC_arch: Flagella a 23.7 1.5E+02 0.0032 16.7 6.0 15 24-38 30-44 (55)
301 PF06120 Phage_HK97_TLTM: Tail 23.7 3.3E+02 0.0072 20.6 9.8 24 14-37 80-103 (301)
302 PF04415 DUF515: Protein of un 23.7 64 0.0014 25.6 2.1 12 91-102 36-47 (416)
303 PF06645 SPC12: Microsomal sig 23.6 1.4E+02 0.003 17.7 3.2 9 90-98 16-24 (76)
304 PF06120 Phage_HK97_TLTM: Tail 23.5 3.3E+02 0.0072 20.6 9.1 31 7-37 80-110 (301)
305 KOG0250 DNA repair protein RAD 23.4 5.5E+02 0.012 23.2 11.8 69 16-84 704-782 (1074)
306 PF01616 Orbi_NS3: Orbivirus N 23.4 2.8E+02 0.0061 19.7 5.6 6 50-55 62-67 (195)
307 KOG3088 Secretory carrier memb 23.2 1.4E+02 0.003 22.7 3.7 32 3-34 62-93 (313)
308 PF13215 DUF4023: Protein of u 22.9 1.1E+02 0.0024 15.9 2.2 23 59-81 1-23 (38)
309 KOG4552 Vitamin-D-receptor int 22.8 3.1E+02 0.0067 20.0 8.9 63 15-77 50-119 (272)
310 COG1196 Smc Chromosome segrega 22.7 5.6E+02 0.012 22.9 12.3 68 10-77 255-322 (1163)
311 PF01130 CD36: CD36 family; I 22.6 2.4E+02 0.0052 22.2 5.2 18 87-104 446-463 (467)
312 PF10779 XhlA: Haemolysin XhlA 22.3 1.7E+02 0.0037 16.8 9.7 20 42-61 5-24 (71)
313 PF02646 RmuC: RmuC family; I 22.1 3.4E+02 0.0074 20.2 9.9 54 20-73 231-284 (304)
314 TIGR02908 CoxD_Bacillus cytoch 22.1 2.3E+02 0.0049 18.3 4.1 16 86-101 26-41 (110)
315 PF07851 TMPIT: TMPIT-like pro 21.9 3.8E+02 0.0081 20.7 10.3 47 26-72 40-90 (330)
316 PF00804 Syntaxin: Syntaxin; 21.8 1.8E+02 0.004 17.0 8.1 63 17-79 9-71 (103)
317 PF10831 DUF2556: Protein of u 21.8 1E+02 0.0023 16.9 2.1 9 86-94 4-12 (53)
318 PRK04561 tatA twin arginine tr 21.7 1.1E+02 0.0024 18.4 2.4 6 95-100 14-19 (75)
319 PRK01833 tatA twin arginine tr 21.7 1.1E+02 0.0024 18.3 2.4 9 92-100 11-19 (74)
320 TIGR02968 succ_dehyd_anc succi 21.5 2.1E+02 0.0045 17.6 5.2 43 65-107 63-105 (105)
321 PF03302 VSP: Giardia variant- 21.4 53 0.0012 25.6 1.3 17 91-107 374-390 (397)
322 COG4499 Predicted membrane pro 21.3 1.9E+02 0.0041 23.0 4.2 12 50-61 185-196 (434)
323 PF11660 DUF3262: Protein of u 21.3 99 0.0022 18.3 2.2 17 91-107 22-38 (76)
324 PF08649 DASH_Dad1: DASH compl 21.3 1.8E+02 0.0038 16.6 5.1 30 16-45 3-32 (58)
325 PF15183 MRAP: Melanocortin-2 21.3 1.8E+02 0.0038 18.0 3.3 10 93-102 48-57 (90)
326 PF05266 DUF724: Protein of un 21.1 3E+02 0.0065 19.2 10.8 51 19-69 128-178 (190)
327 COG2966 Uncharacterized conser 20.8 1.7E+02 0.0037 21.4 3.7 38 51-88 91-128 (250)
328 PF12409 P5-ATPase: P5-type AT 20.8 1.5E+02 0.0033 18.7 3.2 11 97-107 27-37 (119)
329 PRK14749 hypothetical protein; 20.8 1.3E+02 0.0028 14.8 2.6 9 88-96 2-10 (30)
330 TIGR03521 GldG gliding-associa 20.7 1.2E+02 0.0027 24.5 3.3 12 96-107 534-545 (552)
331 PF13805 Pil1: Eisosome compon 20.6 3.7E+02 0.0081 20.1 8.0 37 32-68 96-132 (271)
332 COG4218 MtrF Tetrahydromethano 20.4 2.1E+02 0.0045 17.0 5.6 18 50-67 17-34 (73)
333 TIGR02338 gimC_beta prefoldin, 20.4 2.3E+02 0.005 17.6 9.4 62 16-77 25-94 (110)
334 PF11669 WBP-1: WW domain-bind 20.4 1.5E+02 0.0032 18.6 3.0 7 87-93 21-27 (102)
335 PF05546 She9_MDM33: She9 / Md 20.4 3.4E+02 0.0073 19.5 9.8 23 55-77 111-133 (207)
336 COG5374 Uncharacterized conser 20.2 3.3E+02 0.0071 19.3 5.3 44 38-81 121-167 (192)
337 COG3352 FlaC Putative archaeal 20.2 3E+02 0.0065 18.9 8.0 56 19-74 76-139 (157)
338 PF12777 MT: Microtubule-bindi 20.2 3.9E+02 0.0085 20.2 9.6 56 25-80 231-286 (344)
339 PF13807 GNVR: G-rich domain o 20.1 2E+02 0.0043 16.8 8.1 21 25-45 7-27 (82)
340 PF13608 Potyvirid-P3: Protein 20.1 42 0.00092 26.6 0.5 35 25-61 366-400 (445)
No 1
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.2e-27 Score=170.50 Aligned_cols=105 Identities=42% Similarity=0.665 Sum_probs=96.0
Q ss_pred hhhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 2 EVVLLDNE-ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 2 ~~~~~~~~-~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
|.+..+++ .+++..++++|.+.+.+|+++|.|+++||+||+.+|++||+++|+||+|+++|..|++.|+.+|.+|.+|+
T Consensus 159 e~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 159 EEQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQ 238 (269)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666 78899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHh
Q 038503 81 KSSSSLSCLLLVIFGIILLIVIILIV 106 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~~i~~~~~~ 106 (107)
+++||++|+++++++++++++.++++
T Consensus 239 ~~~~k~~~~ll~v~~~v~lii~l~i~ 264 (269)
T KOG0811|consen 239 RKARKKKCILLLVGGPVGLIIGLIIA 264 (269)
T ss_pred HHhcCchhhhhHHHHHHHHHHHHHHH
Confidence 99999999888888777777766654
No 2
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=5.3e-26 Score=167.83 Aligned_cols=94 Identities=34% Similarity=0.569 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Q 038503 12 FNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLL 91 (107)
Q Consensus 12 ~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~ 91 (107)
--...+++|+.++++||++|.+|++||.||+.+|..||+|+|+||.||.+|.+|+++|+.++++|.+|++++|||+||++
T Consensus 196 ~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~i 275 (297)
T KOG0810|consen 196 QTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIII 275 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHH
Q 038503 92 VIFGIILLIVIILI 105 (107)
Q Consensus 92 ~i~~ii~~i~~~~~ 105 (107)
++++|+++|+++++
T Consensus 276 i~~iii~~v~v~~i 289 (297)
T KOG0810|consen 276 IILIIIIVVLVVVI 289 (297)
T ss_pred hHHHHHHHHHhhhh
Confidence 88888777776665
No 3
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.91 E-value=8.8e-24 Score=152.83 Aligned_cols=105 Identities=35% Similarity=0.551 Sum_probs=96.4
Q ss_pred ChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 1 QEVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 1 ~~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
|+..+...+.+|+..++.+|++++.+|+++|.+|+++|.||+++|.+||+.+|+||.|++++..|++.|+++|.+|..|+
T Consensus 174 qq~~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hq 253 (283)
T COG5325 174 QQQGLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQ 253 (283)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHH
Confidence 35566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHH
Q 038503 81 KSSSSLSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~~i~~~~~ 105 (107)
|+++||..|++++++|+.+++++++
T Consensus 254 rrt~k~~~~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 254 RRTKKCRFYLLLILLVVLLFVSLIK 278 (283)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHH
Confidence 9999999988888877776666553
No 4
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.2e-23 Score=151.93 Aligned_cols=93 Identities=34% Similarity=0.632 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLV 92 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~ 92 (107)
+++...+|++++.++.++|.+|+++|.||+.+|.+||..+|+||+|++++..+++.|.++|.||..|||+++|++||+++
T Consensus 209 ~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L 288 (305)
T KOG0809|consen 209 NEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILML 288 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHH
Q 038503 93 IFGIILLIVIILI 105 (107)
Q Consensus 93 i~~ii~~i~~~~~ 105 (107)
+++|+++++++++
T Consensus 289 ~l~ii~llvllil 301 (305)
T KOG0809|consen 289 TLLIIALLVLLIL 301 (305)
T ss_pred HHHHHHHHHHHHh
Confidence 8877776666654
No 5
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.80 E-value=8.9e-19 Score=124.62 Aligned_cols=94 Identities=26% Similarity=0.381 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHH
Q 038503 11 TFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLL 90 (107)
Q Consensus 11 ~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~ 90 (107)
.--...+++|++++++||++|.+|-++|++|+++|.+|.+++|.|+.|+.+++.|++.|+..+.+|.++.+++||++|+|
T Consensus 174 ktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c 253 (280)
T COG5074 174 KTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRC 253 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceeh
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHHHH
Q 038503 91 LVIFGIILLIVIIL 104 (107)
Q Consensus 91 ~~i~~ii~~i~~~~ 104 (107)
+.|++|+++++..+
T Consensus 254 ~gI~~iii~viv~v 267 (280)
T COG5074 254 YGICFIIIIVIVVV 267 (280)
T ss_pred hhhHHHHHHHHHHH
Confidence 66665554444443
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.1e-17 Score=118.40 Aligned_cols=97 Identities=30% Similarity=0.531 Sum_probs=81.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 2 EVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 2 ~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
|+++++.. ++++++|...+.+||.+|.||.++|.+|++||.+|||++.+||+||+.+..|++.|..+|.|....-+
T Consensus 211 Qm~ll~es----~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS 286 (311)
T KOG0812|consen 211 QMALLDES----DEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS 286 (311)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence 44555544 78999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 038503 82 SSSSLSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ii~~i~~~~~ 105 (107)
++|.. ++-+|+|++++|++|+
T Consensus 287 SNRwL---mvkiF~i~ivFflvfv 307 (311)
T KOG0812|consen 287 SNRWL---MVKIFGILIVFFLVFV 307 (311)
T ss_pred cchHH---HHHHHHHHHHHHHHHH
Confidence 88854 4444444444444444
No 7
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.73 E-value=8.1e-17 Score=93.92 Aligned_cols=63 Identities=32% Similarity=0.566 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+|+++++.|++++.+|+++|.+|+.+|.+|+++||+|++|++.|..++.+|+.+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999975
No 8
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.60 E-value=7.6e-15 Score=84.08 Aligned_cols=59 Identities=32% Similarity=0.616 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
++|++++.+|++++.+++++|.+|+.+|.+|++++|+|++|++.+..++..|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999875
No 9
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=1.8e-13 Score=98.43 Aligned_cols=97 Identities=22% Similarity=0.524 Sum_probs=85.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 038503 8 NEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLS 87 (107)
Q Consensus 8 ~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~ 87 (107)
....++..++++++++++.|+++++.++++...++.++.+|+.++|+.++.++.+...+.++.+.+.+..+ .++.+.+|
T Consensus 138 ~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~~~ 216 (235)
T KOG3202|consen 138 EIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCSQW 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhccccch
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999 56666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038503 88 CLLLVIFGIILLIVIILI 105 (107)
Q Consensus 88 ~~~~~i~~ii~~i~~~~~ 105 (107)
|+++++++++++++++|+
T Consensus 217 ~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 217 CAILLLVGLLLLVVIIFI 234 (235)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 767777766666666654
No 10
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.54 E-value=1e-13 Score=80.57 Aligned_cols=64 Identities=28% Similarity=0.551 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
..+.+++|+++++++++++.+++++|.+++.+|.+|++++|+|+++++.+..++..|..+|.+|
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999999999999999999999999999998764
No 11
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=5.5e-10 Score=82.72 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=84.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 2 EVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 2 ~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+++++++|...-...+++..++++.+++.+.++..+-..+++.|-.|...||.|-+++..|..|++.||+.+++|.+...
T Consensus 212 ~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~ 291 (316)
T KOG3894|consen 212 QVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNG 291 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcc
Confidence 56778888666667777888999999999999999999999999999999999999999999999999999999999988
Q ss_pred cchhhHHHHHHHHHHHH
Q 038503 82 SSSSLSCLLLVIFGIIL 98 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ii~ 98 (107)
+.|+|..++++++.+++
T Consensus 292 ~~r~~~lf~llvlsf~l 308 (316)
T KOG3894|consen 292 GLRVFLLFFLLVLSFSL 308 (316)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 88887665555554443
No 12
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=6.1e-10 Score=71.76 Aligned_cols=90 Identities=18% Similarity=0.301 Sum_probs=75.6
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503 11 TFNEAII-EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL 89 (107)
Q Consensus 11 ~~~~~~i-~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~ 89 (107)
.++.+.. +|.++.++++...+..|+.+.-+++.+|..|+.++|.+++..+.+...+.++...++...+. ++++.+||
T Consensus 24 s~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~ 101 (118)
T KOG3385|consen 24 SSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCW 101 (118)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHH
Confidence 3445555 77778899999999999999999999999999999999999999999999999999888877 67777777
Q ss_pred HHHHHHHHHHHHH
Q 038503 90 LLVIFGIILLIVI 102 (107)
Q Consensus 90 ~~~i~~ii~~i~~ 102 (107)
+++.++|.++++.
T Consensus 102 m~~f~lV~~fi~~ 114 (118)
T KOG3385|consen 102 MAVFSLVAFFILW 114 (118)
T ss_pred HHHHHHHHHHHhh
Confidence 7666555544443
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.20 E-value=0.0002 Score=44.12 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
+.+.++...+.+++++..+=-..+-+-|+.++.+++..+.-......-.+.=
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a 54 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNA 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHH
Confidence 5678899999999999888888888999999999987666555555444333
No 14
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=7.6e-05 Score=55.11 Aligned_cols=57 Identities=12% Similarity=0.278 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
+-+..+..|...+..|+.|..+++.+++.|++.||+|+++++....+|...++.+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 567789999999999999999999999999999999999999999999999988765
No 15
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00099 Score=43.26 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038503 20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSH 63 (107)
Q Consensus 20 r~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~ 63 (107)
.++.++..+..+.++.+++.+=-.=|-+-|+-+|.+++..++-.
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~ 70 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQ 70 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHH
Confidence 46678899999999999999988889999999999987655433
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.61 E-value=0.0072 Score=43.90 Aligned_cols=52 Identities=12% Similarity=0.237 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
+++-.-...|++-...++..+.+-...+++.+..++.....+......|+.-
T Consensus 170 ~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 170 EEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555567777778889999999999999999999999999999998664
No 17
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.043 Score=40.63 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLV 92 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~ 92 (107)
..+-+++=+.+|..++.-..+|..|..+=+..|+.=.+.+++-..|++.+..++.+|.+.=+++.+.. .-..|++++
T Consensus 178 R~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~---~~ll~v~~~ 254 (269)
T KOG0811|consen 178 REQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK---CILLLVGGP 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---hhhhHHHHH
Confidence 56677888888999999999999999999999999999999999999999999999987655544432 445566666
Q ss_pred HHHHHHHHHHH
Q 038503 93 IFGIILLIVII 103 (107)
Q Consensus 93 i~~ii~~i~~~ 103 (107)
+++++.++++.
T Consensus 255 v~lii~l~i~~ 265 (269)
T KOG0811|consen 255 VGLIIGLIIAG 265 (269)
T ss_pred HHHHHHHHHHH
Confidence 66666555544
No 18
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.95 E-value=0.035 Score=33.95 Aligned_cols=55 Identities=9% Similarity=0.065 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038503 28 QEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKS 82 (107)
Q Consensus 28 e~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~ 82 (107)
.+--.++.+.-.-+..-++.=-+-=+++|.-.+.|+.=...|..--+.|.+-+++
T Consensus 6 ~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 6 EQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333344444444444443333333344444444444444444333444444443
No 19
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.044 Score=41.08 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=50.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 9 EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 9 ~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
|++-.-..++.=.+.+.+|+.--.++..+-..=+.+|+.=...+.+-.++|+.+.+++++|...=++|
T Consensus 200 Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka 267 (297)
T KOG0810|consen 200 EIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556667777888888888888888888888888888888888888888888888885443333
No 20
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.086 Score=38.41 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
.-+.++.=.+.+.+|..-..++.++..+=..+|+.=...+.+.+.|++.+..++++|.+..++|
T Consensus 183 Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 183 RHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 3444555555666666666666777777777888777888889999999999999998774333
No 21
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.15 Score=37.89 Aligned_cols=83 Identities=17% Similarity=0.275 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLV 92 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~ 92 (107)
..+.+..=.+++.++..-..++..+..+=+.+|..=...|++..+|+..|...+.+|...=+ ..++.+..+.++++
T Consensus 193 r~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqr----rt~k~~~~~Llil~ 268 (283)
T COG5325 193 RDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQR----RTKKCRFYLLLILL 268 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHh----hhccchhhHHHHHH
Confidence 56677777888888888888888888888888888888888888888888888888885544 44445665555555
Q ss_pred HHHHHHH
Q 038503 93 IFGIILL 99 (107)
Q Consensus 93 i~~ii~~ 99 (107)
+++.+++
T Consensus 269 vv~lfv~ 275 (283)
T COG5325 269 VVLLFVS 275 (283)
T ss_pred HHHHHHH
Confidence 5544333
No 22
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.47 Score=34.05 Aligned_cols=74 Identities=11% Similarity=0.163 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGI 96 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~i 96 (107)
+.++.=.+...+--++..+|-.-++.|-+.+.+--.-.-.+.+|+.++.+-|..-.+.--++ |+.|+.++++.+
T Consensus 135 ~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~n-k~~~~aii~~l~ 208 (220)
T KOG1666|consen 135 DRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRN-KFTLTAIIALLV 208 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 34555566667888888899999999999999988888888888888888776665543333 333433333333
No 23
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=95.56 E-value=0.29 Score=30.23 Aligned_cols=61 Identities=8% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS 84 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r 84 (107)
+....+.+.+--+-...-...+.+|.+.+....+.......-+..+.+=+.+..+..+.-+
T Consensus 10 L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~ 70 (92)
T PF03908_consen 10 LRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDR 70 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444444444444445555677888899999999999888888888887777666655444
No 24
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.62 Score=33.59 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVI 102 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~ 102 (107)
.+.+=-+-+.++-++...--.-.+.|+.++..|...+.++....=.-+.=|.+...++++. . +++-.+|-+++++
T Consensus 150 ~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrd---s--lILa~Vis~C~ll 224 (231)
T KOG3208|consen 150 HINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRD---S--LILAAVISVCTLL 224 (231)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhh---h--HHHHHHHHHHHHH
Confidence 4555555666666777777777889999999999999999888766665555554433222 2 3333344445555
Q ss_pred HHHhC
Q 038503 103 ILIVA 107 (107)
Q Consensus 103 ~~~~~ 107 (107)
++++|
T Consensus 225 llfy~ 229 (231)
T KOG3208|consen 225 LLFYW 229 (231)
T ss_pred HHHHH
Confidence 55555
No 25
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=95.10 E-value=0.32 Score=27.95 Aligned_cols=57 Identities=11% Similarity=0.158 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
.+..-.+.+.+..++..+....+..|++.+.++...+..+..++..++.-+.+..+.
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 678888889999999999999999999999999999999999999999888776553
No 26
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=95.08 E-value=0.88 Score=32.95 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 038503 33 EVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIV 101 (107)
Q Consensus 33 ~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~ 101 (107)
.++........-+.+=.+.+-.-+.-++.....+...+..+++-.+... ..|..+.++|+.++.+|+
T Consensus 166 slKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~--s~wf~~~miI~v~~sFVs 232 (244)
T KOG2678|consen 166 SLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKL--SYWFYITMIIFVILSFVS 232 (244)
T ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhh--hHHHHHHHHHHHHHHHHH
Confidence 3455555566677777888888888888888888888877766554432 333333334443333333
No 27
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=94.49 E-value=0.7 Score=29.03 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHH
Q 038503 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS-SLSCLLLVIFGII 97 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r-k~~~~~~~i~~ii 97 (107)
+.+..+..||..-..+..=+.++..=.+.|...-+..+.+++.-... ..-.++.++... |.-+ -++|++.++..|+
T Consensus 8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~~n~--Knir~~KmwilGlvgTi~ 84 (98)
T PF11166_consen 8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKKKND--KNIRDIKMWILGLVGTIF 84 (98)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 44566888888888888888888888899999999988888874332 112222222111 1222 2567776666665
Q ss_pred HHHHH
Q 038503 98 LLIVI 102 (107)
Q Consensus 98 ~~i~~ 102 (107)
..+++
T Consensus 85 gslii 89 (98)
T PF11166_consen 85 GSLII 89 (98)
T ss_pred HHHHH
Confidence 54443
No 28
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=94.35 E-value=1.4 Score=31.95 Aligned_cols=58 Identities=7% Similarity=0.165 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDD----ISSNIESSHASTAQATTQLAKASKIQKSSSS 85 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~----Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk 85 (107)
++|..++..+..-.++=+... +..|.. ++.....+..|...-..+=.+..+|.+++.+
T Consensus 166 E~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~ 227 (251)
T PF09753_consen 166 EDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG 227 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 355555555444444332222 333333 4444555555555555555566666655555
No 29
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=2.1 Score=30.72 Aligned_cols=77 Identities=8% Similarity=0.064 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILL 99 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~ 99 (107)
.+++-++.+.++-.....+-.-+.+|+..+-.+-..+-....-+.=.+.-+.-..+..+.-+..+|+.+++++|+++
T Consensus 130 ~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~y 206 (213)
T KOG3251|consen 130 SLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMY 206 (213)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45556666666666667777777889988888888888888888777777877777766666555555544444433
No 30
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=2.1 Score=32.23 Aligned_cols=86 Identities=14% Similarity=0.291 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---cchhhHHHHHHHHH
Q 038503 20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI-QK---SSSSLSCLLLVIFG 95 (107)
Q Consensus 20 r~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~-~~---~~rk~~~~~~~i~~ 95 (107)
-++...+=|+.+..+.+=..|++++..+=+.++-.=-.-+|...-|+++..-.++.|.+- +| .-|+-.-+.+++++
T Consensus 209 ~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L 288 (305)
T KOG0809|consen 209 NEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILML 288 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHH
Confidence 333444555555555555555555555555555554455555555555555555555433 11 11223345555555
Q ss_pred HHHHHHHHHH
Q 038503 96 IILLIVIILI 105 (107)
Q Consensus 96 ii~~i~~~~~ 105 (107)
++++|+++++
T Consensus 289 ~l~ii~llvl 298 (305)
T KOG0809|consen 289 TLLIIALLVL 298 (305)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 31
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=92.52 E-value=0.43 Score=27.43 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=10.7
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHH
Q 038503 79 IQKSSSSLSCLLLVIFGIILLIVI 102 (107)
Q Consensus 79 ~~~~~rk~~~~~~~i~~ii~~i~~ 102 (107)
.+++.++..+++++++++++++.+
T Consensus 31 ~qk~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 31 RQKRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444444433
No 32
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=91.74 E-value=7.4 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 55 ISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+.+-...+...+.......++...|
T Consensus 388 ~s~~~~~~~~~~~~~~~~~~~y~~y 412 (806)
T PF05478_consen 388 ISDILNNTERSSRSFEDEYEKYDSY 412 (806)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHH
Confidence 3333444444444444444444444
No 33
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=2.6 Score=27.44 Aligned_cols=6 Identities=17% Similarity=0.456 Sum_probs=2.1
Q ss_pred HHHHHH
Q 038503 68 QATTQL 73 (107)
Q Consensus 68 ~~~~eL 73 (107)
++...|
T Consensus 78 ~~A~kl 83 (116)
T KOG0860|consen 78 KTAVKL 83 (116)
T ss_pred HHHHHH
Confidence 333333
No 34
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=91.11 E-value=2 Score=25.19 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQAT 70 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~ 70 (107)
.+.+..||..+.-.-+...+++..|..|...||++...+..-...+....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35688899999999999999999999999999999998888887777654
No 35
>PRK11637 AmiB activator; Provisional
Probab=89.70 E-value=8.2 Score=30.05 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLA 74 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~ 74 (107)
+..+++.+..+..-..++...+..-..-++..+..+..++..+......+.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444443
No 36
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.11 E-value=7.6 Score=28.91 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 30 QISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 30 ~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
.+.+.......-..++.+|++.|++||.+++........+-+.|..-..+
T Consensus 87 ~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~ 136 (273)
T KOG3065|consen 87 LAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGL 136 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34455666677788999999999999999999999999998888655544
No 37
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=89.02 E-value=1.7 Score=24.94 Aligned_cols=14 Identities=29% Similarity=0.295 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHh
Q 038503 67 AQATTQLAKASKIQ 80 (107)
Q Consensus 67 ~~~~~eL~~A~~~~ 80 (107)
+.|+.-|.+.-++|
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 44555666666655
No 38
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=88.03 E-value=8.3 Score=27.99 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDIS----------------SNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie----------------~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
..|.++.++|-.++.+-..=|.+-+.-+ |..-++.+- .++....+..++..++++.+.+.-+
T Consensus 67 d~reK~~~~I~ssL~eTtkdf~~~~~k~--~~dF~~~Lq~~Lk~V~tde~k~~~~~ei~k~r~e~~~ml~evK~~~E~y~ 144 (230)
T PF03904_consen 67 DIREKNLKEIKSSLEETTKDFIDKTEKV--HNDFQDILQDELKDVDTDELKNIAQNEIKKVREENKSMLQEVKQSHEKYQ 144 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666555555543332 333333332 2334445556667777777777766
Q ss_pred cchhhHHHHHHHHH
Q 038503 82 SSSSLSCLLLVIFG 95 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ 95 (107)
++.+.++..+..++
T Consensus 145 k~~k~~~~gi~aml 158 (230)
T PF03904_consen 145 KRQKSMYKGIGAML 158 (230)
T ss_pred HHHHHHHHhHHHHH
Confidence 66666664444433
No 39
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.99 E-value=5.2 Score=26.41 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
..|+.+..++.+..++...+...|.+=++-+++|.+.++..+.-+..=-..+
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777777777777777777777666665555443333
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=87.74 E-value=3.9 Score=23.95 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=23.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 42 AVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 42 ~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
..-++...+-++.+|.+-+.....+...+++|.+-...
T Consensus 12 e~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 12 ETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666777777766666667777777655543
No 41
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=87.68 E-value=1.5 Score=28.68 Aligned_cols=37 Identities=11% Similarity=0.390 Sum_probs=24.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 4 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKD 40 (107)
Q Consensus 4 ~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~ 40 (107)
..++..++.-.+++=|+.+++.+|..++.++++||..
T Consensus 78 ~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666777777777777777777777765
No 42
>PRK00295 hypothetical protein; Provisional
Probab=86.38 E-value=4.8 Score=23.56 Aligned_cols=47 Identities=11% Similarity=0.196 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
.+..||..+.-.-+...+++..|..|...||.+...+..-...+...
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999998887776666553
No 43
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=85.78 E-value=4.3 Score=27.75 Aligned_cols=36 Identities=31% Similarity=0.305 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 038503 66 TAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIV 101 (107)
Q Consensus 66 v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~ 101 (107)
.++=..++..|.+..+++.|.+-++.+++++.++|+
T Consensus 133 ~~~L~~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIl 168 (170)
T PF09548_consen 133 LEQLEQQLEEAREEAKKKGKLYRSLGVLGGLFLVIL 168 (170)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333344455566555555554444444444443333
No 44
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=85.46 E-value=4.5 Score=27.78 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 038503 67 AQATTQLAKASKIQKSSSSLSCLLLVIFGIILLI 100 (107)
Q Consensus 67 ~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i 100 (107)
+.=..++..|.+.++++.|.+-++-+++++.++|
T Consensus 134 ~~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvI 167 (170)
T TIGR02833 134 EHLERQLTEAEDEQKKNEKMYRYLGVLVGLMIVL 167 (170)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3334455566666666666544454444444333
No 45
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=85.42 E-value=4.5 Score=27.80 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 038503 67 AQATTQLAKASKIQKSSSSLSCLLLVIFGIILLI 100 (107)
Q Consensus 67 ~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i 100 (107)
+.=..++.+|.+.++++.|.+-++-+++++.++|
T Consensus 135 e~L~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvI 168 (171)
T PRK08307 135 EHLEREEEEAEEEQKKNEKMYKYLGFLAGLLIVI 168 (171)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3334445566666666666544454444444333
No 46
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=85.25 E-value=22 Score=30.17 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHH
Q 038503 33 EVNEIFKDLAVLVHEQGVMIDD-ISSNIESSHASTAQA 69 (107)
Q Consensus 33 ~l~~l~~~l~~~V~~Qge~id~-Ie~nv~~a~~~v~~~ 69 (107)
+++....+++..+..+.+.+-. +..++.....++.+.
T Consensus 361 ~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~ 398 (806)
T PF05478_consen 361 PIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERS 398 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433332 333444444444443
No 47
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.23 E-value=5.8 Score=23.47 Aligned_cols=48 Identities=10% Similarity=0.199 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
...+..||..+.-.-+...+|+..|..|...||.+...+..-...+..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999999999999999999999988887777666554
No 48
>PRK04325 hypothetical protein; Provisional
Probab=85.20 E-value=6 Score=23.55 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
+.+..||..+.-.-+...+|+..|..|+..|+.+...+..-...+...
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348999999999999999999999999999999998877776666543
No 49
>PRK00736 hypothetical protein; Provisional
Probab=84.91 E-value=5.8 Score=23.20 Aligned_cols=47 Identities=11% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
..+..||..+.-.-+...+|+..|..|...||.+...+..-.+.+..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999887777666654
No 50
>PRK02119 hypothetical protein; Provisional
Probab=84.90 E-value=6.1 Score=23.45 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
..=.+.+..||..+.-.-+...+|+..|..|...||.+...+..-...+..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334567889999999999999999999999999999998887777666644
No 51
>PRK11637 AmiB activator; Provisional
Probab=84.65 E-value=17 Score=28.31 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=40.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 6 LDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 6 ~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+..+++.....+++-..++.++++.+..+..=...+...+..-..-++.++..++.....+.....++....+.
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555555555555566666666666666666666666666555544
No 52
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=84.23 E-value=0.77 Score=27.91 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVI 93 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i 93 (107)
.+.+-.....+...|.++.+++|++.++-+++
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 33444445556788888888887765544333
No 53
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=83.01 E-value=9.7 Score=24.26 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038503 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTA 67 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~ 67 (107)
...+++..+...+....+-...+...+..||+.++.|...+..-..++.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666677777666666555554443
No 54
>PLN03160 uncharacterized protein; Provisional
Probab=82.91 E-value=0.74 Score=32.93 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 038503 99 LIVIILIV 106 (107)
Q Consensus 99 ~i~~~~~~ 106 (107)
.+++++++
T Consensus 51 ~~v~~~l~ 58 (219)
T PLN03160 51 ATTILVLV 58 (219)
T ss_pred HHHHHhee
Confidence 33333333
No 55
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.20 E-value=22 Score=27.08 Aligned_cols=82 Identities=20% Similarity=0.286 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhhHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVLVHEQGVMIDD---ISSNIESSHASTAQATTQLAKASKIQK---SSSSLSCLLLVIFGIILL 99 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~V~~Qge~id~---Ie~nv~~a~~~v~~~~~eL~~A~~~~~---~~rk~~~~~~~i~~ii~~ 99 (107)
.++.-+.++.++=..+-.+..-|..+-.. =+.|++--.+.+..+..+++.+++--+ .++.+.--+++++++++.
T Consensus 226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvls 305 (316)
T KOG3894|consen 226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLS 305 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 44444555555555555556666655444 477888888888899999988876533 233333445566677777
Q ss_pred HHHHHHhC
Q 038503 100 IVIILIVA 107 (107)
Q Consensus 100 i~~~~~~~ 107 (107)
++++++-|
T Consensus 306 f~lLFldw 313 (316)
T KOG3894|consen 306 FSLLFLDW 313 (316)
T ss_pred HHHHHHhh
Confidence 77888777
No 56
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=80.84 E-value=3.6 Score=33.05 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503 51 MIDDISSNIESSHASTAQATTQLAKASKIQKSSS 84 (107)
Q Consensus 51 ~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r 84 (107)
.+| |..+..++...++++...|+++.+.=.+..
T Consensus 433 PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~ 465 (490)
T PF00523_consen 433 PLD-ISSELGQVNNSLNNAKDLLDKSNQILDSVN 465 (490)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345 666666666666666666666666544433
No 57
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.80 E-value=6.6 Score=28.08 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVM 51 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~ 51 (107)
+-++...+.+++.++-+==+-|-+-||-
T Consensus 127 lskvkaqv~evk~vM~eNIekvldRGek 154 (217)
T KOG0859|consen 127 LAKVKAQVTEVKGVMMENIEKVLDRGEK 154 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCe
Confidence 3444455555555554444444444443
No 58
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=80.52 E-value=0.54 Score=38.40 Aligned_cols=45 Identities=4% Similarity=0.074 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
.-.++....-+|++-.++. ..-||-||.++++++.+++++++++|
T Consensus 523 ~I~~LN~tlVdLe~Ln~~e-~YiKWPWyVWL~i~~~li~~~~~l~~ 567 (610)
T PF01601_consen 523 VIDNLNNTLVDLEWLNRYE-TYIKWPWYVWLAIILALIAFALILLW 567 (610)
T ss_dssp HHHHHHCCHHHCCHHTTCC-CHH-----------------------
T ss_pred HHHHhhhhheeHHHhccee-EEeehHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555565555552 34477788888777777777777766
No 59
>PHA02844 putative transmembrane protein; Provisional
Probab=80.47 E-value=3.5 Score=24.73 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 038503 85 SLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 85 k~~~~~~~i~~ii~~i~~~~ 104 (107)
.+.+++++++++++++++++
T Consensus 47 ~~~~~ii~i~~v~~~~~~~f 66 (75)
T PHA02844 47 STKIWILTIIFVVFATFLTF 66 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 60
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=79.89 E-value=1.7 Score=34.84 Aligned_cols=31 Identities=3% Similarity=0.112 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 49 GVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 49 ge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+..++.+...+++|++.++++++-|.+....
T Consensus 437 S~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~ 467 (490)
T PF00523_consen 437 SSELGQVNNSLNNAKDLLDKSNQILDSVNPG 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3457889999999999999999999877764
No 61
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=79.71 E-value=9.1 Score=21.80 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
+++.++.-+..|-..|.....-=..+++.++++|.++++-..++-.=
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L 48 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVIL 48 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888889999999999999999887766443
No 62
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=79.04 E-value=5.4 Score=23.97 Aligned_cols=23 Identities=9% Similarity=0.185 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038503 50 VMIDDISSNIESSHASTAQATTQ 72 (107)
Q Consensus 50 e~id~Ie~nv~~a~~~v~~~~~e 72 (107)
..++.||.+.........+....
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 38899999888877777666544
No 63
>PHA02650 hypothetical protein; Provisional
Probab=78.79 E-value=4.1 Score=24.75 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 038503 84 SSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 84 rk~~~~~~~i~~ii~~i~~~~ 104 (107)
..+.+.+++++++++++++++
T Consensus 47 ~~~~~~ii~i~~v~i~~l~~f 67 (81)
T PHA02650 47 FNGQNFIFLIFSLIIVALFSF 67 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 333343444444444444443
No 64
>PHA03054 IMV membrane protein; Provisional
Probab=78.67 E-value=4.4 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.644 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 038503 86 LSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 86 ~~~~~~~i~~ii~~i~~~~ 104 (107)
+.+.+++++++++++++++
T Consensus 48 ~~~~ii~l~~v~~~~l~~f 66 (72)
T PHA03054 48 WYWLIIIFFIVLILLLLIY 66 (72)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 65
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=78.64 E-value=8.4 Score=20.78 Aligned_cols=55 Identities=13% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 27 IQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 27 le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
-.+.+..+.....+++.+..+=+..+..=..-++....++..+...++.|.+.-+
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567777888888888888888888888888888888888888888888776543
No 66
>PHA02819 hypothetical protein; Provisional
Probab=78.15 E-value=4.7 Score=23.94 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 038503 86 LSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 86 ~~~~~~~i~~ii~~i~~~~ 104 (107)
+.+.+++++++++++++++
T Consensus 46 ~~~~ii~l~~~~~~~~~~f 64 (71)
T PHA02819 46 RYYLIIGLVTIVFVIIFII 64 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 67
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=77.53 E-value=17 Score=23.74 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 34 VNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 34 l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
|++.|..|.++++.=..-.+.+|...-.|..++..+..+|++..+-
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaKe 47 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAKE 47 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665544445568999999999999999999887654
No 68
>PRK00846 hypothetical protein; Provisional
Probab=77.33 E-value=13 Score=22.40 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
..+..||..+.-.-+...+++..|..|...+|++...+..-.+.++..
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888889999999999999999999999999988887777766554
No 69
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.75 E-value=26 Score=25.52 Aligned_cols=64 Identities=16% Similarity=0.323 Sum_probs=38.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhhcc--hhhHH-HHHHHHHHHHH
Q 038503 44 LVHEQGVMIDDISSNIESSHA---------------------STAQATTQLAKASKIQKSS--SSLSC-LLLVIFGIILL 99 (107)
Q Consensus 44 ~V~~Qge~id~Ie~nv~~a~~---------------------~v~~~~~eL~~A~~~~~~~--rk~~~-~~~~i~~ii~~ 99 (107)
++.+|.+.+|.|+..+...+. .+......|....+.-.+- .+..| +++++++++++
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~ 225 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGL 225 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 677788888888877655433 3344444454454443321 12234 56777777777
Q ss_pred HHHHHHhC
Q 038503 100 IVIILIVA 107 (107)
Q Consensus 100 i~~~~~~~ 107 (107)
+++++++|
T Consensus 226 ~~lvv~i~ 233 (235)
T KOG3202|consen 226 LLLVVIIF 233 (235)
T ss_pred HHHHHHHh
Confidence 77777777
No 70
>PHA02975 hypothetical protein; Provisional
Probab=76.70 E-value=6 Score=23.37 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=9.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 038503 82 SSSSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ii~~i~~~~ 104 (107)
+++.+.+.+++++.+++++++++
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~f 62 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTF 62 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443
No 71
>PRK13673 hypothetical protein; Provisional
Probab=76.39 E-value=8.9 Score=25.04 Aligned_cols=37 Identities=5% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHH
Q 038503 69 ATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 69 ~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~ 105 (107)
|.-|..-+++.+.+..+..|+..++++++.+.+.+.+
T Consensus 75 g~mEm~l~r~kk~k~~~~~~~~~ii~lvlti~lG~~L 111 (118)
T PRK13673 75 GLMEMSLAKRKKGKPTGGFWWIFIIVLVLTILLGLIL 111 (118)
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4556666776666666666767666666665555543
No 72
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=76.38 E-value=8.3 Score=22.10 Aligned_cols=32 Identities=9% Similarity=0.221 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Q 038503 70 TTQLAKASKIQKSSSSLSCLLLVIFGIILLIV 101 (107)
Q Consensus 70 ~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~ 101 (107)
.++..+..+..++.+..++.++++++++.+++
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655554444443
No 73
>PRK04406 hypothetical protein; Provisional
Probab=75.69 E-value=14 Score=21.99 Aligned_cols=48 Identities=13% Similarity=0.270 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
...+..||..+.-.-+...+|+..|..|...||.+...+..-...+..
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888899999999999999999999999999888777776665543
No 74
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=75.27 E-value=18 Score=22.99 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 19 EREQGIKEIQEQIS--EVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 19 er~~~i~~le~~i~--~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
.-++.+.++|..+. ...+-.+.+..-|..|||.|......+.....-++.-...|..
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ 92 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQS 92 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888 5566667777888888988888877777544444444444433
No 75
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=74.35 E-value=13 Score=20.66 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038503 29 EQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKS 82 (107)
Q Consensus 29 ~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~ 82 (107)
..+..|..-..++..+..+=+..++.=..-++....++..+...+.++.+.-++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555666665566666666666666666666555433
No 76
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=72.46 E-value=4.1 Score=31.40 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=5.8
Q ss_pred chhhHHHHHHHHHH
Q 038503 83 SSSLSCLLLVIFGI 96 (107)
Q Consensus 83 ~rk~~~~~~~i~~i 96 (107)
.+++.|++++++++
T Consensus 18 ~~~~~~~~~~~~~~ 31 (390)
T PRK15136 18 GKRKRALLLLTLLF 31 (390)
T ss_pred cchhHHHHHHHHHH
Confidence 33443544443333
No 77
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=72.02 E-value=27 Score=23.53 Aligned_cols=21 Identities=10% Similarity=0.324 Sum_probs=9.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 038503 6 LDNEITFNEAIIEEREQGIKE 26 (107)
Q Consensus 6 ~~~~~~~~~~~i~er~~~i~~ 26 (107)
+++..+-+..++.+..++++.
T Consensus 37 l~~~~~aq~~~l~~fk~elE~ 57 (144)
T PF11657_consen 37 LEDSAKAQQEQLDQFKEELEE 57 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 78
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=71.37 E-value=19 Score=22.24 Aligned_cols=44 Identities=7% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
|-..+.-+..-+...++.+. .|+.|-=+...+++.++++++++|
T Consensus 36 a~afi~Va~~~i~~y~eir~--gK~~W~~fg~~~vVGvvLlv~viw 79 (87)
T PF11190_consen 36 AAAFIVVAKAAISTYNEIRD--GKKTWGDFGATVVVGVVLLVFVIW 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHc--CcccHHHhhhHHHHHHHHHHHHHH
Confidence 44444455555655555544 333443334444444444444444
No 79
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=71.25 E-value=52 Score=26.43 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 12 FNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 12 ~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
.....+.+=.+.+.++...+.++.+.+.+++.-+.+|...++.|..+++....-++.
T Consensus 430 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 430 VGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667889999999999999999999999999999998888776555444
No 80
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=70.96 E-value=8.9 Score=27.77 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcchhhHH
Q 038503 68 QATTQLAKASKIQKSSSSLSC 88 (107)
Q Consensus 68 ~~~~eL~~A~~~~~~~rk~~~ 88 (107)
.-.+++..|.+.+++..++..
T Consensus 8 ~~~~Qi~q~y~~trk~dp~l~ 28 (224)
T PF13829_consen 8 GRRKQIWQAYKMTRKEDPKLP 28 (224)
T ss_pred hHHHHHHHHHHHHHHHCcchH
Confidence 345788999999887776443
No 81
>PHA02414 hypothetical protein
Probab=70.34 E-value=25 Score=22.33 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---hHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSS---LSCLLLVIFGIILLI 100 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk---~~~~~~~i~~ii~~i 100 (107)
-.+|+..+.+|++|...+..-+.-|.+-=..|-+.++.- +.+...|....+..-..+| -+.+++++.+++-.+
T Consensus 31 n~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~L----ee~i~aL~~~n~ked~~KkD~vEkVfmivLGAvvtyV 106 (111)
T PHA02414 31 NKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERL----EEKISALAESNKKEDTEKKDTVEKVFMIVLGAVVTYV 106 (111)
T ss_pred hHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHH----HHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 468899999999999998888888887777776666554 4444555555444322222 234455555666666
Q ss_pred HHH
Q 038503 101 VII 103 (107)
Q Consensus 101 ~~~ 103 (107)
|..
T Consensus 107 Fs~ 109 (111)
T PHA02414 107 FSK 109 (111)
T ss_pred HHh
Confidence 644
No 82
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.86 E-value=18 Score=20.53 Aligned_cols=46 Identities=15% Similarity=0.364 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
.+++|+.++..|+.=...|+..| +.+-..+..|++...+|+..|.-
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv-------~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV-------NALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666655444444333 23333445566666666666543
No 83
>PHA03240 envelope glycoprotein M; Provisional
Probab=69.83 E-value=4.5 Score=29.34 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=10.8
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 038503 83 SSSLSCLLLVIFGIILLIVI 102 (107)
Q Consensus 83 ~rk~~~~~~~i~~ii~~i~~ 102 (107)
+-.-.|+++++++|+++|++
T Consensus 210 aaH~~WIiilIIiIiIIIL~ 229 (258)
T PHA03240 210 AAHIAWIFIAIIIIIVIILF 229 (258)
T ss_pred cchHhHHHHHHHHHHHHHHH
Confidence 44456666665555544444
No 84
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=69.28 E-value=5.1 Score=30.46 Aligned_cols=11 Identities=0% Similarity=0.184 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 038503 87 SCLLLVIFGII 97 (107)
Q Consensus 87 ~~~~~~i~~ii 97 (107)
+.+.+++++++
T Consensus 114 ~~~~~lv~~vv 124 (331)
T PRK10856 114 MTFTWLVLFVV 124 (331)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 85
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.99 E-value=19 Score=20.38 Aligned_cols=9 Identities=22% Similarity=0.601 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 038503 51 MIDDISSNI 59 (107)
Q Consensus 51 ~id~Ie~nv 59 (107)
.++.|+.|+
T Consensus 29 ~ve~i~env 37 (55)
T PF05377_consen 29 SVEKIEENV 37 (55)
T ss_pred HHHHHHHHH
Confidence 333333333
No 86
>PHA02692 hypothetical protein; Provisional
Probab=68.44 E-value=10 Score=22.46 Aligned_cols=12 Identities=0% Similarity=0.271 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 038503 93 IFGIILLIVIIL 104 (107)
Q Consensus 93 i~~ii~~i~~~~ 104 (107)
++.+++++++++
T Consensus 53 ~~~~~~~vll~f 64 (70)
T PHA02692 53 LIAAAIGVLLCF 64 (70)
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.25 E-value=59 Score=25.82 Aligned_cols=61 Identities=11% Similarity=0.201 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 17 i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
+++=..++...++.+.+..+-+..+...+.++..-++.++..+-.+.....+-.+++....
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 4445566778888888888888888888888888888887777776666655555554433
No 88
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=68.20 E-value=17 Score=19.65 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMI 52 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~i 52 (107)
..|-+.+.+++++..++...+.+|-.=+
T Consensus 4 ~~l~~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 4 SQLIKQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566888899999999999888875433
No 89
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=68.09 E-value=26 Score=21.64 Aligned_cols=52 Identities=12% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVLVHEQG-VMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~V~~Qg-e~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
+.+..-.++..-|..+...+.+.. .+++.++..-......+..-...+....
T Consensus 36 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l 88 (127)
T smart00502 36 NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQ 88 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677777777777554 4778888766665555555555444433
No 90
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=67.59 E-value=35 Score=23.23 Aligned_cols=43 Identities=21% Similarity=0.118 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 038503 57 SNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILL 99 (107)
Q Consensus 57 ~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~ 99 (107)
.+++-+..+++....+.+.-.+.+.+-.+..-++.-++++|++
T Consensus 127 k~i~l~~~~L~~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 127 KHIELYLEQLEQQLEEAREEAKKKGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555556666666666666666665554
No 91
>PRK09793 methyl-accepting protein IV; Provisional
Probab=67.54 E-value=62 Score=25.82 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQAT 70 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~ 70 (107)
...+.+=...+.++...+.++.+...+++.-+.+|...++.|..+++....-++...
T Consensus 428 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 484 (533)
T PRK09793 428 SKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNA 484 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556678888899999999999999999999999888887776655544443
No 92
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=66.95 E-value=63 Score=25.72 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
...+++=.+.+.++...+.++.+.+.+++.-+.+|...++.|..+++....-.+.
T Consensus 430 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~ 484 (553)
T PRK15048 430 SVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQ 484 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666788889999999999999999999999999988888776666553
No 93
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=65.66 E-value=24 Score=20.31 Aligned_cols=13 Identities=8% Similarity=-0.031 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 038503 59 IESSHASTAQATT 71 (107)
Q Consensus 59 v~~a~~~v~~~~~ 71 (107)
-++|.+.+.+--+
T Consensus 8 nETA~~FL~RvGr 20 (60)
T PF06072_consen 8 NETATEFLRRVGR 20 (60)
T ss_pred cccHHHHHHHHhH
Confidence 3556666655443
No 94
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=64.90 E-value=21 Score=19.45 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
..+.+-...+..+.....+++.+..+=+..++.=...++....++..+...++.|.+.-
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l 63 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRL 63 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777777778888888888888877777553
No 95
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=64.87 E-value=52 Score=24.02 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS-SLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r-k~~~~~~~i~~ii~~i~~~~ 104 (107)
+|..++..+..-+.. .--.=+..|+.=..-+..+..-++.....|..+...-.+.. +|..+++.+..||+++++++
T Consensus 155 eLaesll~LArslKt---nalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFV 231 (244)
T KOG2678|consen 155 ELAESLLKLARSLKT---NALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFV 231 (244)
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 444444444444433 32333445555445556666667777777777776654444 44455556666666666555
Q ss_pred H
Q 038503 105 I 105 (107)
Q Consensus 105 ~ 105 (107)
.
T Consensus 232 s 232 (244)
T KOG2678|consen 232 S 232 (244)
T ss_pred H
Confidence 3
No 96
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=64.55 E-value=24 Score=20.02 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 39 KDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 39 ~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
.+|+.-|.+=+..+|.+...+......+..+..|-.+|..+
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556778899999999999999999988888765
No 97
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=63.75 E-value=55 Score=26.17 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTA 67 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~ 67 (107)
.+=+.|....+.++..-..+|.|..+...+++.|...+...|.+++....-|.
T Consensus 48 aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 48 ALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 34456677788899999999999999999999999999999999998876653
No 98
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=63.37 E-value=44 Score=22.62 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
....+.+=.+.+..+...+.++...+.++..-+.+|...+..|...+.....-++..........
T Consensus 126 ~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~ 190 (213)
T PF00015_consen 126 GSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEEIA 190 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566777777777777788888888888887777777766665555555544444433
No 99
>PRK10884 SH3 domain-containing protein; Provisional
Probab=63.25 E-value=52 Score=23.41 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 36 EIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 36 ~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
+-..++..-+.+-...+.+++..-......+..+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555666666666666666666666654
No 100
>PHA02675 ORF104 fusion protein; Provisional
Probab=62.94 E-value=33 Score=21.11 Aligned_cols=45 Identities=13% Similarity=0.337 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQAT 70 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~ 70 (107)
.++.-+..|-+.|..+...-..=++.++++|.+.++-..++-.=+
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~ 78 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLN 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666678888888888899999999999998776665443
No 101
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=62.47 E-value=33 Score=20.87 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh----cchhhHHHHHHHHHHHHHHHHHHHh
Q 038503 34 VNEIFKDLAVLVHEQGVMIDDISS---NIESSHASTAQATTQLAKASKIQK----SSSSLSCLLLVIFGIILLIVIILIV 106 (107)
Q Consensus 34 l~~l~~~l~~~V~~Qge~id~Ie~---nv~~a~~~v~~~~~eL~~A~~~~~----~~rk~~~~~~~i~~ii~~i~~~~~~ 106 (107)
|...-..|+..++.=...++.++. .+..+.+....-...+.++.+.-+ +...=+|++.+.+++.+++ .++|+
T Consensus 10 L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~-v~yI~ 88 (92)
T PF03908_consen 10 LRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLV-VLYIL 88 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHh
Confidence 344444555566655555555543 344555555555556666655433 3333456555554444433 34444
Q ss_pred C
Q 038503 107 A 107 (107)
Q Consensus 107 ~ 107 (107)
|
T Consensus 89 ~ 89 (92)
T PF03908_consen 89 W 89 (92)
T ss_pred h
Confidence 3
No 102
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=61.87 E-value=28 Score=19.95 Aligned_cols=30 Identities=17% Similarity=-0.010 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 038503 57 SNIESSHASTAQATTQLAKASKIQKSSSSL 86 (107)
Q Consensus 57 ~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~ 86 (107)
...+...+.+....+=++.|.+--++-.++
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ 34 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLL 34 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 345666677777777777776654443333
No 103
>PTZ00478 Sec superfamily; Provisional
Probab=61.68 E-value=34 Score=20.85 Aligned_cols=36 Identities=6% Similarity=0.062 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 038503 53 DDISSNIESSHASTAQATTQLAKASKIQKSSSSLSC 88 (107)
Q Consensus 53 d~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~ 88 (107)
|.+++-++...+.+..+.+=+++..|--++-..+.+
T Consensus 14 ~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kia 49 (81)
T PTZ00478 14 NPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIA 49 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 346667777888888888777776654444333333
No 104
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.99 E-value=71 Score=24.22 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
...|-+|-.-..+|..|..+=++.+.-=++.+|.++-|++-|...+-+--..+
T Consensus 233 EstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~v 285 (311)
T KOG0812|consen 233 ESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERV 285 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHh
Confidence 33444444445555555555555555555566667777777776666655444
No 105
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=60.81 E-value=14 Score=22.69 Aligned_cols=10 Identities=20% Similarity=0.062 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q 038503 70 TTQLAKASKI 79 (107)
Q Consensus 70 ~~eL~~A~~~ 79 (107)
..+|.+-...
T Consensus 19 ~DQL~qlVsr 28 (84)
T PF06143_consen 19 YDQLEQLVSR 28 (84)
T ss_pred HHHHHHHHHh
Confidence 3456555544
No 106
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=59.90 E-value=22 Score=22.77 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 038503 68 QATTQLAKASKIQKSSSSLSCLLLVIFGIIL 98 (107)
Q Consensus 68 ~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~ 98 (107)
=|.-|..-+++.+++..+..|+.+++++++.
T Consensus 76 I~lmEm~l~rkkk~k~~~~~~~~~ii~~vlt 106 (110)
T PF07457_consen 76 IGLMEMALARKKKGKPTKILWWLFIILLVLT 106 (110)
T ss_pred HHHHHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 3555666777777666666665555554443
No 107
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=59.71 E-value=35 Score=20.24 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038503 55 ISSNIESSHASTAQATTQL 73 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL 73 (107)
+....+..++.++.++.|+
T Consensus 17 i~~rLd~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 17 IMKRLDEIEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3444444555555555554
No 108
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=59.36 E-value=37 Score=20.46 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 40 DLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 40 ~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
++++-|.+=+..+|.+|..++.+...+..+..+-.+|...
T Consensus 29 qlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~r 68 (78)
T COG4238 29 QLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQR 68 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 3444444445667888888888888888888777776654
No 109
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=58.49 E-value=39 Score=20.50 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH
Q 038503 28 QEQISEVNEIFKDLAVLVHEQGV-MIDDISSNIESSHASTAQATT 71 (107)
Q Consensus 28 e~~i~~l~~l~~~l~~~V~~Qge-~id~Ie~nv~~a~~~v~~~~~ 71 (107)
+.-..++.++....+.......+ .-++++..++.+.........
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~ 52 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAAD 52 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333322 334455555555555544433
No 110
>PF14992 TMCO5: TMCO5 family
Probab=58.22 E-value=77 Score=23.79 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=44.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 8 NEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 8 ~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
+.++.-..-.....+++.+++.+...++++-.|=+..++.=.+.+.+||+..+..--+.+-
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el 176 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKEL 176 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556677788888888888888888888888887777778888866655544443
No 111
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=56.27 E-value=85 Score=23.67 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 34 VNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 34 l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
.+++|..+..-|..-.+-++.|..-++.++..+++=
T Consensus 34 ~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l 69 (297)
T PF11945_consen 34 SNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKL 69 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777766643
No 112
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=55.87 E-value=28 Score=23.72 Aligned_cols=15 Identities=13% Similarity=0.560 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 038503 89 LLLVIFGIILLIVII 103 (107)
Q Consensus 89 ~~~~i~~ii~~i~~~ 103 (107)
+..+++++.++++++
T Consensus 20 ~~Ai~~~l~fL~~ll 34 (155)
T PF11812_consen 20 LAAIAIALAFLVILL 34 (155)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 113
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=54.38 E-value=48 Score=23.39 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=3.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 038503 85 SLSCLLLVIFGIILLIV 101 (107)
Q Consensus 85 k~~~~~~~i~~ii~~i~ 101 (107)
++.+|+-+++.|+++++
T Consensus 152 ~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 152 KWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555544444443333
No 114
>PF06195 DUF996: Protein of unknown function (DUF996); InterPro: IPR010397 This is a family of uncharacterised bacterial and archaeal proteins.
Probab=54.16 E-value=62 Score=21.48 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHH--HhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 64 ASTAQATTQLAKASK--IQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 64 ~~v~~~~~eL~~A~~--~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
-+.+++-+.+.+... +=+.+.+..|+..+...+++..+++++.|
T Consensus 93 ~f~kks~~~l~~~tg~~~F~tag~ly~iGAiL~IIlIG~ii~lIa~ 138 (139)
T PF06195_consen 93 YFLKKSYDLLAEYTGVDLFKTAGLLYFIGAILTIILIGLIIILIAW 138 (139)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667666665552 33556677777777777777777777765
No 115
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=54.06 E-value=12 Score=28.25 Aligned_cols=17 Identities=35% Similarity=0.723 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
+.|++||++++++.++|
T Consensus 263 iaIliIVLIMvIIYLIL 279 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLIL 279 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444555555544
No 116
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=53.45 E-value=38 Score=20.38 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=16.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038503 41 LAVLVHEQGVMIDDISSNIESSHASTA 67 (107)
Q Consensus 41 l~~~V~~Qge~id~Ie~nv~~a~~~v~ 67 (107)
++.=+.+|..-|...+.++..-..-+.
T Consensus 50 i~~s~eeq~~~i~~Le~~i~~k~~~L~ 76 (83)
T PF07544_consen 50 IDRSVEEQEEEIEELEEQIRKKREVLQ 76 (83)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555567777777777766655444433
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.31 E-value=95 Score=23.35 Aligned_cols=63 Identities=14% Similarity=0.278 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS 84 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r 84 (107)
.++..+...+.+...-.......+.+-...+..++..++...........++..|.+.....+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 446666667777776667667777777778888888888888888888888887776654333
No 118
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.45 E-value=67 Score=21.37 Aligned_cols=65 Identities=15% Similarity=0.223 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHE---QGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 17 i~er~~~i~~le~~i~~l~~l~~~l~~~V~~---Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+..=..++++++..+.+..+-+.+-...... =+.-|..+|.-++.+..++..+...|..|.....
T Consensus 44 ~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 44 NQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333445666666666666666665544322 2335666888888888888888888887766544
No 119
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=52.28 E-value=1.2e+02 Score=24.15 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=39.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 3 VVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 3 ~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
+-..+.++...+.-+.+..++..++++.+.++..=...+-..+.+=..-++.++.++.....++..-
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 3344555566666666666666777777766666555555555555555555555555555444433
No 120
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.11 E-value=59 Score=23.35 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=7.5
Q ss_pred hhHHHHHHHHHHH
Q 038503 48 QGVMIDDISSNIE 60 (107)
Q Consensus 48 Qge~id~Ie~nv~ 60 (107)
-|-|+++||.-.+
T Consensus 138 k~vM~eNIekvld 150 (217)
T KOG0859|consen 138 KGVMMENIEKVLD 150 (217)
T ss_pred HHHHHHHHHHHHh
Confidence 3556666665443
No 121
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=52.09 E-value=26 Score=20.88 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=4.4
Q ss_pred HHhhcchhh
Q 038503 78 KIQKSSSSL 86 (107)
Q Consensus 78 ~~~~~~rk~ 86 (107)
+|.|++|+.
T Consensus 8 ~Y~rrSr~~ 16 (72)
T PF13198_consen 8 EYPRRSRKT 16 (72)
T ss_pred HccchhHHH
Confidence 344555553
No 122
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=51.88 E-value=32 Score=23.29 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=17.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH
Q 038503 82 SSSSLSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ii~~i~~~~~ 105 (107)
+.|-+.|++.+.+.|+.+++.++.
T Consensus 90 k~RIkv~~~Mi~lTiiGc~~mv~s 113 (146)
T PF06388_consen 90 KARIKVCYIMIALTIIGCIAMVIS 113 (146)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888887776553
No 123
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=51.72 E-value=39 Score=18.71 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 038503 33 EVNEIFKDLAVLVHEQGVMIDDISSN 58 (107)
Q Consensus 33 ~l~~l~~~l~~~V~~Qge~id~Ie~n 58 (107)
.++.-|.+++.+++.||...|.|...
T Consensus 12 aih~tydelgkei~~~g~~~d~i~ka 37 (58)
T PF13060_consen 12 AIHRTYDELGKEIDLQGVIADEIQKA 37 (58)
T ss_pred HHHHhHHHHhHHhhhcchHHHHHHHH
Confidence 46777899999999999999887643
No 124
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=51.68 E-value=51 Score=19.78 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKD---LAVLVHEQGVMIDDISSNIESSHA 64 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~---l~~~V~~Qge~id~Ie~nv~~a~~ 64 (107)
.+.+++=+..+..++..+.++..-+.+ +..-+..|...++.++..++...+
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777788888777776666 666677788888888776665543
No 125
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=51.67 E-value=32 Score=17.82 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 038503 87 SCLLLVIFGII 97 (107)
Q Consensus 87 ~~~~~~i~~ii 97 (107)
.|+.+.++.|+
T Consensus 15 ~Wi~F~l~mi~ 25 (38)
T PF09125_consen 15 GWIAFALAMIL 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 45554444443
No 126
>COG4640 Predicted membrane protein [Function unknown]
Probab=51.63 E-value=21 Score=28.27 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 038503 67 AQATTQLAKASKIQKS 82 (107)
Q Consensus 67 ~~~~~eL~~A~~~~~~ 82 (107)
.+|++.+......+|+
T Consensus 30 sqan~~tn~i~~trrk 45 (465)
T COG4640 30 SQANKSTNEIIQTRRK 45 (465)
T ss_pred hhhhHHHHHHHHhhcc
Confidence 3455555554444443
No 127
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.35 E-value=1e+02 Score=23.17 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=39.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 3 VVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 3 ~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
+..+..++..+...++++.+++..++.....+.+-..++.....+-...|...+.-.+........-...|
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~L 281 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRL 281 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 34445555556666666666666666666666666666655555555555555544444444333333333
No 128
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=50.44 E-value=79 Score=21.59 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 51 MIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 51 ~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
.....+..+......+......|+..-+..|.. -.+|++.++++++.++++++=+|
T Consensus 121 e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~-~lr~~~g~i~~~~a~~la~~r~~ 176 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTEIANLRTEIESLKWD-TLRWLVGVIFGCVALVLAILRLW 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666655543322 23455556666666666655444
No 129
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.13 E-value=93 Score=22.31 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 55 ISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
..+.+++|-..+.++.+.+.++..|.
T Consensus 132 ~~~~mena~~~I~~~L~~I~~~q~y~ 157 (209)
T KOG1693|consen 132 ALTQMENAIVEIHRALNKIDDTQTYY 157 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 130
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=50.12 E-value=43 Score=18.39 Aligned_cols=18 Identities=11% Similarity=0.058 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 038503 64 ASTAQATTQLAKASKIQK 81 (107)
Q Consensus 64 ~~v~~~~~eL~~A~~~~~ 81 (107)
++......|+++..--.+
T Consensus 4 ~f~~~~~~Elkkv~WP~~ 21 (57)
T PF00584_consen 4 NFFREVKKELKKVTWPSR 21 (57)
T ss_dssp HHHHCHHHHHHHHHCCCT
T ss_pred HHHHHHHHHHHHhcCCCH
Confidence 456667777776654433
No 131
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=49.97 E-value=26 Score=18.89 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 038503 90 LLVIFGIILLIVIILIVA 107 (107)
Q Consensus 90 ~~~i~~ii~~i~~~~~~~ 107 (107)
++.+.+++.++.+.+.+|
T Consensus 6 lip~sl~l~~~~l~~f~W 23 (45)
T PF03597_consen 6 LIPVSLILGLIALAAFLW 23 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555555
No 132
>PF15106 TMEM156: TMEM156 protein family
Probab=49.74 E-value=23 Score=25.57 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHH
Q 038503 84 SSLSCLLLVIFGII 97 (107)
Q Consensus 84 rk~~~~~~~i~~ii 97 (107)
-|..||.+++++++
T Consensus 174 mKITWYvLVllVfi 187 (226)
T PF15106_consen 174 MKITWYVLVLLVFI 187 (226)
T ss_pred hhhHHHHHHHHHHH
Confidence 35556655444433
No 133
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=49.72 E-value=31 Score=24.08 Aligned_cols=41 Identities=12% Similarity=0.150 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 65 STAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 65 ~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
.+.+|..=| |.+.+.-+.+=..++..+.++++++++.+++|
T Consensus 17 ~~~~~~~~~--~~~W~~ls~REq~ll~~~g~vL~l~i~Y~~iW 57 (178)
T PRK09731 17 QLSRGEHWL--AQHLAGRSPREKGMLLAAVVFLFSVGYYVLIW 57 (178)
T ss_pred HhcchhhHH--HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 55666656555555666666666777777776
No 134
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=49.43 E-value=74 Score=22.92 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 038503 61 SSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVI 102 (107)
Q Consensus 61 ~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~ 102 (107)
++....+.-..-|.-+.+-.+..|+++=+-++++++++.+++
T Consensus 167 t~~q~a~DVv~FL~w~aeP~~~~R~~~G~~vl~fL~il~~l~ 208 (219)
T PF02167_consen 167 TVDQMAKDVVNFLAWAAEPEKDERKRMGLKVLGFLLILTVLA 208 (219)
T ss_dssp -HHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566777777766666655444555555444444
No 135
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=48.97 E-value=11 Score=25.71 Aligned_cols=17 Identities=18% Similarity=0.134 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhcchh
Q 038503 69 ATTQLAKASKIQKSSSS 85 (107)
Q Consensus 69 ~~~eL~~A~~~~~~~rk 85 (107)
|-.-|-+-.+.+.+++|
T Consensus 115 GyDsLLKkKEae~kr~K 131 (159)
T PF06789_consen 115 GYDSLLKKKEAELKRSK 131 (159)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 33444443433333333
No 136
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=48.68 E-value=30 Score=26.98 Aligned_cols=11 Identities=9% Similarity=0.189 Sum_probs=4.7
Q ss_pred hhhHHHHHHHH
Q 038503 84 SSLSCLLLVIF 94 (107)
Q Consensus 84 rk~~~~~~~i~ 94 (107)
+.+.|+++++.
T Consensus 344 ~~~~~~~ii~~ 354 (374)
T TIGR03503 344 DSKFWIIIIVG 354 (374)
T ss_pred hhhhhHhhHhh
Confidence 44445333333
No 137
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.94 E-value=1e+02 Score=22.23 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISS 57 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~ 57 (107)
.++.....++..++..==..|-.-|+.++..+.
T Consensus 137 ~~~n~el~~v~~im~~niedvl~rg~~l~~l~~ 169 (216)
T KOG0862|consen 137 LKLNQELQDVQRIMVENLEDVLQRGEVLNALSS 169 (216)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhh
Confidence 344444444444444433344444555554443
No 138
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=47.56 E-value=54 Score=18.83 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Q 038503 60 ESSHASTAQATTQLAKASKIQKSSSS 85 (107)
Q Consensus 60 ~~a~~~v~~~~~eL~~A~~~~~~~rk 85 (107)
+...+.+....+=+++|.+--++-..
T Consensus 4 e~~~~f~k~~~r~lk~~~KPd~~Ef~ 29 (61)
T TIGR00327 4 EAPVEFIKEGTRVLAVCKKPDLEEYL 29 (61)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 34566667777777766655444333
No 139
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=47.10 E-value=32 Score=21.40 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+++.+.|...++.|..++.+|.+.|.
T Consensus 27 ~~~fe~A~~~l~~a~~~l~~AH~~qt 52 (96)
T PF02255_consen 27 EGDFEEAEELLKEADEELLKAHKIQT 52 (96)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998774
No 140
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=46.88 E-value=30 Score=23.82 Aligned_cols=10 Identities=30% Similarity=0.192 Sum_probs=4.9
Q ss_pred HHHHhhcchh
Q 038503 76 ASKIQKSSSS 85 (107)
Q Consensus 76 A~~~~~~~rk 85 (107)
..++||..+|
T Consensus 21 s~~r~k~~~R 30 (161)
T PHA02673 21 SVKRQKAIRR 30 (161)
T ss_pred HHHHHHHHHH
Confidence 3445555554
No 141
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=46.39 E-value=33 Score=19.00 Aligned_cols=17 Identities=6% Similarity=-0.031 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
+.+.+++.++.+.+.+|
T Consensus 8 IpiSl~l~~~~l~~f~W 24 (51)
T TIGR00847 8 IPISLLLGGVGLVAFLW 24 (51)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444455555555
No 142
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=46.39 E-value=35 Score=20.89 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=6.2
Q ss_pred cchhhHHHHHHHHHHH
Q 038503 82 SSSSLSCLLLVIFGII 97 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ii 97 (107)
++||..+.++++++++
T Consensus 11 ~~kkFl~~l~~vfiia 26 (85)
T PF10749_consen 11 EGKKFLLALAIVFIIA 26 (85)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444433333333333
No 143
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=46.13 E-value=92 Score=21.11 Aligned_cols=66 Identities=14% Similarity=0.249 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 12 FNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 12 ~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
.-..-++||+.++.++...+....+..+..-.-.+.=......+...+........+...++..+.
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k 118 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVK 118 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999988777766555555544444433333444444444444444444444444443
No 144
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=46.09 E-value=1.5e+02 Score=23.68 Aligned_cols=48 Identities=13% Similarity=0.053 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 32 SEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 32 ~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
.++..+...++.|..+=...++.++..+......++..++.|...+..
T Consensus 178 dE~g~L~~~~n~M~~~L~~~~~~l~~~~~~~t~~l~~~~~~l~~ly~~ 225 (569)
T PRK10600 178 DEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEQKNQILSFLWQA 225 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777888888888888888888888888655443
No 145
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=46.08 E-value=95 Score=21.25 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
..++.....++.+...++.+++......+.+.+++..+...+......|.......
T Consensus 113 ~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~~ 168 (204)
T PF04740_consen 113 EQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQS 168 (204)
T ss_pred HHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444556666777788888877788888888889888888888887666543
No 146
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=46.00 E-value=59 Score=18.83 Aligned_cols=29 Identities=31% Similarity=0.581 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVH 46 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~ 46 (107)
.+|...+..++..+.+..++..+|..++.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999988885
No 147
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=45.80 E-value=6.8 Score=25.87 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038503 51 MIDDISSNIESSHASTAQATTQ 72 (107)
Q Consensus 51 ~id~Ie~nv~~a~~~v~~~~~e 72 (107)
.++.++..++.....+.....+
T Consensus 113 ~~~~~~~~l~~l~~~l~~i~~~ 134 (183)
T PF01105_consen 113 HLDPLEESLEKLESNLKEIKDE 134 (183)
T ss_dssp ----------------------
T ss_pred hhhhhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 148
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=45.35 E-value=1.7e+02 Score=24.00 Aligned_cols=41 Identities=20% Similarity=0.348 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMID 53 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id 53 (107)
-.++..+=+.+++.+++++..+++=...++..|-+-.-.+|
T Consensus 426 ~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD 466 (561)
T PF00429_consen 426 YRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALD 466 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 34555566667777777777777777777777665544554
No 149
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=44.90 E-value=1.2e+02 Score=21.94 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=4.5
Q ss_pred cchhhHHHHHH
Q 038503 82 SSSSLSCLLLV 92 (107)
Q Consensus 82 ~~rk~~~~~~~ 92 (107)
+++|..|.+..
T Consensus 35 rs~k~aw~va~ 45 (229)
T PRK13865 35 RLSRVLAAVAG 45 (229)
T ss_pred HHHHHHHHHHH
Confidence 34443454433
No 150
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=44.88 E-value=66 Score=19.06 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 038503 51 MIDDISSNIESS 62 (107)
Q Consensus 51 ~id~Ie~nv~~a 62 (107)
-+|.||..++.+
T Consensus 20 rLd~iEeKVEf~ 31 (70)
T TIGR01149 20 RLDEIEEKVEFV 31 (70)
T ss_pred HHHHHHHHHHHH
Confidence 345555444444
No 151
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=44.88 E-value=34 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+++.+.|...++.|...+.+|.+.|.
T Consensus 28 ~g~fe~A~~~l~ea~~~l~~AH~~qt 53 (97)
T cd00215 28 EGDFAEAEELLEEANDSLNEAHHAQT 53 (97)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998874
No 152
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=44.81 E-value=70 Score=19.33 Aligned_cols=15 Identities=0% Similarity=0.180 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 038503 59 IESSHASTAQATTQL 73 (107)
Q Consensus 59 v~~a~~~v~~~~~eL 73 (107)
.+..++.++.++.|+
T Consensus 24 LD~iEeKVEftn~Ei 38 (77)
T PRK01026 24 LDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444445555444
No 153
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=44.70 E-value=49 Score=28.63 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=12.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHH
Q 038503 81 KSSSSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~~i~~~~ 104 (107)
-++|-++|+++++++++++++..+
T Consensus 57 TSTRim~Wilf~cvll~Iv~iscf 80 (981)
T PF03408_consen 57 TSTRIMAWILFVCVLLSIVLISCF 80 (981)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 355556665555554444444433
No 154
>PRK11677 hypothetical protein; Provisional
Probab=44.60 E-value=93 Score=20.70 Aligned_cols=52 Identities=13% Similarity=0.243 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
=+++++.=.++.+-=.++..+..+=.++++++..+-.+...++.+|..+|--
T Consensus 35 e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~Llp 86 (134)
T PRK11677 35 QYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSELLP 86 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3566677777777788889999999999999999999999999999988843
No 155
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.53 E-value=1.1e+02 Score=21.68 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 038503 58 NIESSHASTAQATTQL 73 (107)
Q Consensus 58 nv~~a~~~v~~~~~eL 73 (107)
....++...+....++
T Consensus 147 ~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 147 QLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 156
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=44.43 E-value=70 Score=19.26 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 37 IFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 37 l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
....+...+..+...++..+..++.+......+..+.+...+.
T Consensus 53 ~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L 95 (123)
T PF02050_consen 53 YISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKL 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555544444433
No 157
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=44.41 E-value=57 Score=22.22 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 038503 50 VMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSL 86 (107)
Q Consensus 50 e~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~ 86 (107)
..++++..++..-.-..+.+.++|++..+......+|
T Consensus 68 ~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~ 104 (193)
T PF06738_consen 68 AAVNRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPW 104 (193)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHH
Confidence 3456666666667777888999998888776444444
No 158
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=44.36 E-value=7.4 Score=24.70 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH
Q 038503 86 LSCLLLVIFGIIL 98 (107)
Q Consensus 86 ~~~~~~~i~~ii~ 98 (107)
.+|+.++++.+++
T Consensus 28 ~k~~~~i~~s~~~ 40 (106)
T PF11837_consen 28 LKCLAAIFSSLLF 40 (106)
T ss_dssp -------------
T ss_pred chhHHHHHHHHHH
Confidence 3555555444433
No 159
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=44.34 E-value=29 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038503 87 SCLLLVIFGIILLIVII 103 (107)
Q Consensus 87 ~~~~~~i~~ii~~i~~~ 103 (107)
+|++++++.++++|++-
T Consensus 35 m~~lvI~~iFil~Vilw 51 (94)
T PF05393_consen 35 MWFLVICGIFILLVILW 51 (94)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45444444444444333
No 160
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=44.31 E-value=75 Score=19.55 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=20.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 45 VHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 45 V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
|..=+..+|.+...+..+...+..|..+=.+|.++
T Consensus 33 V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 33 VQTLNAKIARLEQDMKALRPQIYAAKSEANRANTR 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455666666666666666666665555554
No 161
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=44.12 E-value=1.2e+02 Score=22.00 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 038503 86 LSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 86 ~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
..|.++.+.++| +..|.+++|
T Consensus 199 l~Wv~l~iG~iI-i~tLtYvGw 219 (232)
T PF09577_consen 199 LIWVMLSIGGII-IATLTYVGW 219 (232)
T ss_pred hHHHHHHHHHHH-HHHHHHHHH
Confidence 444434444444 455556665
No 162
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=43.97 E-value=66 Score=18.80 Aligned_cols=26 Identities=15% Similarity=0.013 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 54 DISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 54 ~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
..++-.+...++++...+=++.|.+-
T Consensus 3 ~~~~~~e~~~~~lke~~rvl~~arKP 28 (65)
T COG2443 3 QMMDKPEELREFLKEYRRVLKVARKP 28 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35566777888888888877777654
No 163
>PF14979 TMEM52: Transmembrane 52
Probab=43.67 E-value=32 Score=23.40 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 038503 86 LSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 86 ~~~~~~~i~~ii~~i~~~~~ 105 (107)
..|+++++++++++.++..+
T Consensus 18 ~LWyIwLill~~~llLLCG~ 37 (154)
T PF14979_consen 18 SLWYIWLILLIGFLLLLCGL 37 (154)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 45777777777666666543
No 164
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.83 E-value=79 Score=19.41 Aligned_cols=31 Identities=6% Similarity=0.042 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 038503 55 ISSNIESSHASTAQATTQLAKASKIQKSSSSLSC 88 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~ 88 (107)
+|.........+..--++|..-++. +||-++
T Consensus 41 lE~E~~~l~~~l~~~E~eL~~LrkE---NrK~~~ 71 (85)
T PF15188_consen 41 LEKELNELKEKLENNEKELKLLRKE---NRKSML 71 (85)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh---hhhhHH
Confidence 4566666666666667777666664 444444
No 165
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.67 E-value=1.6e+02 Score=22.82 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=38.6
Q ss_pred hhhhhhhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 5 LLDNEITFNEAIIEEREQGI-----------KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 5 ~~~~~~~~~~~~i~er~~~i-----------~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
.+.+++....+-|..|.+.+ +.....+.++.+-+++.+.-|.+....+.+|.+-.+.++..++.
T Consensus 245 kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 245 KLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566665544 34455555566666666666777777777777776666666543
No 166
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=42.60 E-value=63 Score=24.93 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 70 TTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 70 ~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
+++..-+--+.+++|++.+.+..+.++++.++...+.|
T Consensus 69 ~~~igl~~V~s~rsrr~~vl~~~vag~v~avi~~LIa~ 106 (345)
T PF07260_consen 69 FHHIGLVFVNSKRSRRKAVLCMAVAGAVAAVIHLLIAW 106 (345)
T ss_pred hHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555666665555555555445444443
No 167
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=42.45 E-value=66 Score=20.55 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHH-HHHHHHHHHHHHHHHHH
Q 038503 61 SSHASTAQATTQLAKASKIQKSSSSLSC-LLLVIFGIILLIVIILI 105 (107)
Q Consensus 61 ~a~~~v~~~~~eL~~A~~~~~~~rk~~~-~~~~i~~ii~~i~~~~~ 105 (107)
.|...+.-+..-+.+..+.+..+.+|.= -...++.++++++.+++
T Consensus 51 ~a~aFi~Va~~a~~ty~Ei~~Gk~~W~~fg~~v~VGviLLv~vIwL 96 (104)
T TIGR03745 51 AAIAFIGVAYHALGTYHEIRTGKATWGDFGATVVVGAILLVVIIWL 96 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhhHHhCcchhhhHhHHHHHHHHH
Confidence 3556666677777777777654443322 22333344444444443
No 168
>PRK15396 murein lipoprotein; Provisional
Probab=42.40 E-value=77 Score=19.12 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038503 58 NIESSHASTAQATTQLA 74 (107)
Q Consensus 58 nv~~a~~~v~~~~~eL~ 74 (107)
.+..|++.-.++|.+|.
T Consensus 54 ~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 54 DVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 169
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=42.20 E-value=57 Score=17.55 Aligned_cols=11 Identities=9% Similarity=-0.037 Sum_probs=4.4
Q ss_pred HHHHHhhcchh
Q 038503 75 KASKIQKSSSS 85 (107)
Q Consensus 75 ~A~~~~~~~rk 85 (107)
.+.+.=++++.
T Consensus 7 ~~~~~f~~nk~ 17 (56)
T PF12911_consen 7 DAWRRFRRNKL 17 (56)
T ss_pred HHHHHHHhCch
Confidence 33344344443
No 170
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=41.56 E-value=53 Score=16.99 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=6.0
Q ss_pred hhcchhhHHHHHH
Q 038503 80 QKSSSSLSCLLLV 92 (107)
Q Consensus 80 ~~~~rk~~~~~~~ 92 (107)
||--|...||+.+
T Consensus 17 qkwirnit~cfal 29 (40)
T PF13124_consen 17 QKWIRNITFCFAL 29 (40)
T ss_pred HHHHHHHHHHHHH
Confidence 4444554454433
No 171
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=41.43 E-value=1.1 Score=27.48 Aligned_cols=8 Identities=13% Similarity=0.002 Sum_probs=0.0
Q ss_pred cchhhHHH
Q 038503 82 SSSSLSCL 89 (107)
Q Consensus 82 ~~rk~~~~ 89 (107)
+.|+|.|+
T Consensus 63 kKrrwlwL 70 (81)
T PF14812_consen 63 KKRRWLWL 70 (81)
T ss_dssp --------
T ss_pred ccchhHHH
Confidence 34444443
No 172
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=41.01 E-value=1.3e+02 Score=22.08 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 038503 68 QATTQLAKASKIQKSSSSLSCLLLVIFGIIL 98 (107)
Q Consensus 68 ~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~ 98 (107)
.+.=+..+..+.-|+. +..|+++.+++++.
T Consensus 25 a~~~~~~r~~~~~r~r-~~~~~va~~~~~l~ 54 (239)
T COG3736 25 ARNWEEDRVIKLERSR-RLAWRVAILFTLLA 54 (239)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3333333444443333 55555544444433
No 173
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.98 E-value=1e+02 Score=20.25 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=25.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 42 AVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 42 ~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
..-+++|.+....|.+.|..+..++..-..++......
T Consensus 74 d~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 74 DDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33456666677777777777777777777666655544
No 174
>PRK09039 hypothetical protein; Validated
Probab=40.00 E-value=1.7e+02 Score=22.36 Aligned_cols=67 Identities=10% Similarity=0.079 Sum_probs=44.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038503 4 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQAT 70 (107)
Q Consensus 4 ~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~ 70 (107)
..+..++.-......+-+.++..|.+.|..|+.--..+...+..-..........++.-...+..+.
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777788888888888888877666666666555555555555555555555554
No 175
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=39.87 E-value=1.4e+02 Score=21.36 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
.+..++++.+.+.+..++.+|.-=-.-...|-+.+|.+-.|...-++.+++=.++|.....
T Consensus 133 ~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sLN~ 193 (202)
T TIGR03513 133 KKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEMEKMAANLTSLNE 193 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666778888888888888887666666677788888877777777778777777766554
No 176
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=39.73 E-value=2e+02 Score=23.24 Aligned_cols=57 Identities=9% Similarity=0.165 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
.+.+..++|.+...++.+-|..+...+..=|..++....+.+.|...+..|..++-.
T Consensus 363 ~q~~na~eIa~~a~~Lydkl~~f~~~~~klG~~L~~a~~~y~~A~~~L~~Grgnli~ 419 (475)
T PRK10361 363 HQSRNAQQIADRASKLYDKMRLFVDDMSAIGQSLDKAQDNYRQAMKKLSSGRGNVLA 419 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 345567778888888888888888888888889999999998888888776555433
No 177
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=39.49 E-value=46 Score=20.85 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.+.+.|...++.|...+.+|.+.|.
T Consensus 30 ~gdfe~A~~~l~eA~~~l~~AH~~qt 55 (99)
T TIGR00823 30 AGDFAKARALVEQAGMCLNEAHLAQT 55 (99)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999998874
No 178
>PHA03011 hypothetical protein; Provisional
Probab=39.16 E-value=84 Score=20.10 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNI 59 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv 59 (107)
..++..+.++-.+.+|=..+++-=...+|++-.|+
T Consensus 81 n~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 81 NLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 34445555444444444444433333444444333
No 179
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=39.01 E-value=24 Score=25.80 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH
Q 038503 58 NIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVI 102 (107)
Q Consensus 58 nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~ 102 (107)
+...+...+++-..-|+.+..-.+..||++=+.++++++++.+|.
T Consensus 194 ~~~~tdq~~~dlvaYL~~~~ep~~~~rk~~g~~v~~fl~~~~~l~ 238 (250)
T COG2857 194 NPALTDQEVKDLVAYLKWAAEPEKEERKRLGFKVMIFLVVFTILA 238 (250)
T ss_pred ChhhHHHHHHHHHHHHHHccCccHHHhhcCCeeehhHHHHHHHHH
Confidence 455566666666777777776666666655444455555444443
No 180
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.96 E-value=82 Score=18.44 Aligned_cols=26 Identities=12% Similarity=0.220 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 53 DDISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 53 d~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
|.++.-++-..++...+.+-.++..+
T Consensus 2 ~~~~~~~~~~~~f~k~s~rf~krC~K 27 (67)
T KOG3498|consen 2 DQVDQLVEPLRDFAKDSIRFVKRCTK 27 (67)
T ss_pred chHHHhcchHHHHHHHHHHHHHHhcC
Confidence 45566666777777777766665544
No 181
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=38.96 E-value=49 Score=18.98 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHH
Q 038503 86 LSCLLLVIFGII 97 (107)
Q Consensus 86 ~~~~~~~i~~ii 97 (107)
-+|.+++-++|+
T Consensus 10 triVLLISfiIl 21 (59)
T PF11119_consen 10 TRIVLLISFIIL 21 (59)
T ss_pred HHHHHHHHHHHH
Confidence 334443333333
No 182
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=38.84 E-value=2e+02 Score=22.95 Aligned_cols=50 Identities=20% Similarity=0.188 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 27 IQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 27 le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
....+...++-...-.+-|.++.+.+.+ .+++.++.++-..+|++++...
T Consensus 236 rd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~yyQ~y 285 (499)
T COG4372 236 RDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAYYQAY 285 (499)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444455555554 4566777777777777766543
No 183
>PRK10404 hypothetical protein; Provisional
Probab=38.76 E-value=1e+02 Score=19.41 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhcchhhHHHHHHHHHHH
Q 038503 27 IQEQISEVNEIFKDLAVLVHEQGV-MIDDISSNIESSHASTAQATT--------QLAKASKIQKSSSSLSCLLLVIFGII 97 (107)
Q Consensus 27 le~~i~~l~~l~~~l~~~V~~Qge-~id~Ie~nv~~a~~~v~~~~~--------eL~~A~~~~~~~rk~~~~~~~i~~ii 97 (107)
|..-+.++.+++..-+..-.+..+ .=++++..++.+...+..+.. -...+..|-+.+. |-.+.+.+.+
T Consensus 14 l~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P---w~avGiaagv 90 (101)
T PRK10404 14 LTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP---WQGIGVGAAV 90 (101)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHH
Confidence 333334444444444444333332 334566666666654444333 3333444544433 3344444445
Q ss_pred HHHHHHH
Q 038503 98 LLIVIIL 104 (107)
Q Consensus 98 ~~i~~~~ 104 (107)
.+++.++
T Consensus 91 GlllG~L 97 (101)
T PRK10404 91 GLVLGLL 97 (101)
T ss_pred HHHHHHH
Confidence 4444443
No 184
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=38.67 E-value=48 Score=20.98 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+++.+.|...++.|...+.+|.+.|.
T Consensus 33 ~gdf~~A~~~l~eA~~~l~~AH~~qt 58 (104)
T PRK09591 33 EGNFDLAEQKLNQSNEELLEAHHAQT 58 (104)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999998874
No 185
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.31 E-value=1.7e+02 Score=21.85 Aligned_cols=68 Identities=16% Similarity=0.270 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
+.-.+..+.+=+.+..+++..+..|..=..++..-+.+..+-+|....++...+..+......+..=.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777788888888888777888888888888888888888777777777777765433
No 186
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.29 E-value=1.5e+02 Score=21.42 Aligned_cols=63 Identities=13% Similarity=0.285 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGV-MIDDIS---SNIESSHASTAQATTQLAKASKIQKSSSSLSC 88 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge-~id~Ie---~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~ 88 (107)
+.|+++-..+.+-. .++.+.++=|. ++.++. +.+..|.+.+..+..+|.++.+.-++..++.|
T Consensus 128 erLeRst~rl~ds~-Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~ 194 (220)
T KOG1666|consen 128 ERLERSTDRLKDSQ-RIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI 194 (220)
T ss_pred HHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence 45666666666543 34444444443 555554 35677888888888888888888776655555
No 187
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=37.81 E-value=27 Score=23.88 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=4.1
Q ss_pred hHHHHHHHHH
Q 038503 86 LSCLLLVIFG 95 (107)
Q Consensus 86 ~~~~~~~i~~ 95 (107)
..|+++++++
T Consensus 17 ~~~I~liv~i 26 (159)
T COG1580 17 SLWILLIVLI 26 (159)
T ss_pred eeehHHHHHH
Confidence 3444444433
No 188
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=37.57 E-value=2.2e+02 Score=23.11 Aligned_cols=45 Identities=7% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHHH
Q 038503 58 NIESSHASTAQATTQLAKASKIQKSSSS-LSCLLLVIFGIILLIVI 102 (107)
Q Consensus 58 nv~~a~~~v~~~~~eL~~A~~~~~~~rk-~~~~~~~i~~ii~~i~~ 102 (107)
.+-.|...+.+|.-+|.+..+..-++|- +..|++++=+=+++|++
T Consensus 502 q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlL 547 (554)
T KOG4677|consen 502 QLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLL 547 (554)
T ss_pred HHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHh
Confidence 5677888899999999998888777664 33344443344444443
No 189
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=37.14 E-value=99 Score=18.91 Aligned_cols=62 Identities=13% Similarity=0.261 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 16 IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 16 ~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
.+++=...|..|...+..|..+...+..-...-.+.=+.++..++.+..........|+...
T Consensus 9 ~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~ 70 (117)
T smart00503 9 KVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELE 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777777777777777777655431122334455555555555555555554443
No 190
>PHA03046 Hypothetical protein; Provisional
Probab=37.09 E-value=1.3e+02 Score=20.16 Aligned_cols=56 Identities=13% Similarity=0.212 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
.+++..-..+++.+-.-+..|-.+|+.....-..-++.++++|.+.++...++-.-
T Consensus 76 DsFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~Ml~L 131 (142)
T PHA03046 76 DSFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNMITL 131 (142)
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556678888888888889999988888899999999999999877665443
No 191
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=36.90 E-value=56 Score=21.13 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+++.+.|...++.|...+.+|.+.|.
T Consensus 44 ~gdfe~A~~~l~eA~e~l~~AH~~qt 69 (115)
T PRK10454 44 QGDFAAAKAMMDQSRMALNEAHLVQT 69 (115)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999998874
No 192
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=36.84 E-value=1.4e+02 Score=20.42 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhcchhhH
Q 038503 65 STAQATTQLAKASKIQKSSSSLS 87 (107)
Q Consensus 65 ~v~~~~~eL~~A~~~~~~~rk~~ 87 (107)
+++....+.+.-.+.+.|-.+..
T Consensus 136 ~L~~~~~~a~~~~~k~~Kmy~~L 158 (171)
T PRK08307 136 HLEREEEEAEEEQKKNEKMYKYL 158 (171)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHH
Confidence 33333333333333444444433
No 193
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=36.59 E-value=1.6e+02 Score=21.05 Aligned_cols=31 Identities=23% Similarity=0.402 Sum_probs=15.1
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 77 SKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 77 ~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
.+.+.+.....-+.+++.++++++++++++|
T Consensus 174 ~~~q~~a~~~~~~~li~~~~~i~l~~~~~~~ 204 (207)
T COG5278 174 LAEQQNAARTLRIALIIGGIVILLVAVMLAL 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444555555555555555544
No 194
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=36.31 E-value=1.6e+02 Score=21.08 Aligned_cols=21 Identities=10% Similarity=0.197 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038503 55 ISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
...........+......+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 117 RQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 195
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=36.22 E-value=78 Score=19.03 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 038503 52 IDDISSNIESSHA 64 (107)
Q Consensus 52 id~Ie~nv~~a~~ 64 (107)
.|..-+...+...
T Consensus 27 Fd~~~ygfrr~~~ 39 (92)
T PF13038_consen 27 FDGFSYGFRRLFR 39 (92)
T ss_pred hHHHHHHHHHHHH
Confidence 3444333333333
No 196
>PRK01844 hypothetical protein; Provisional
Probab=36.17 E-value=74 Score=18.98 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 038503 87 SCLLLVIF 94 (107)
Q Consensus 87 ~~~~~~i~ 94 (107)
.|+++.++
T Consensus 5 ~~I~l~I~ 12 (72)
T PRK01844 5 LGILVGVV 12 (72)
T ss_pred HHHHHHHH
Confidence 34444444
No 197
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=35.95 E-value=1.2e+02 Score=19.54 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 17 i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
+.+=...+..|...+..|..+...+.+-.......=+.+++-++.+..........|+...
T Consensus 8 v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 8 VEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456667777777777777776666542223444555555555555555555554443
No 198
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=35.85 E-value=42 Score=18.30 Aligned_cols=17 Identities=41% Similarity=0.727 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
+++++.+++++++-+-|
T Consensus 7 ~iilg~~ll~~LigiCw 23 (49)
T PF05624_consen 7 LIILGALLLLLLIGICW 23 (49)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 199
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=1.7e+02 Score=21.12 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 49 GVMIDDISSNIESSHASTAQATTQLAKASKIQ------------------KSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 49 ge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~------------------~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
..++|.+=.+-..+-+++..-+..|+.+.+.- |+.+.-++++++-+++.++++-++..|
T Consensus 135 ~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~i~~~v~~yl~~~w 211 (213)
T KOG3251|consen 135 HNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGVILTLVIMYLFYRW 211 (213)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554444445555555555555554432 334445555555555555555555555
No 200
>PHA02141 hypothetical protein
Probab=35.59 E-value=80 Score=19.56 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038503 38 FKDLAVLVHEQGVMIDDISSNIESSHAS 65 (107)
Q Consensus 38 ~~~l~~~V~~Qge~id~Ie~nv~~a~~~ 65 (107)
..-++-++..|.+.+|+++..++..+..
T Consensus 22 ~~l~~~m~knq~~~i~~l~t~~es~~~f 49 (105)
T PHA02141 22 IGLLGWMIKNQSEQIDNLETKIETIQKF 49 (105)
T ss_pred HHHHHHHHhchHHHHhHHHHHHHHHHHH
Confidence 3456667777777777777777665543
No 201
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.20 E-value=1e+02 Score=18.40 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
++.+..||..+..--+...+++..|.+|.-.+|+.-..+..-.+.+..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~ 54 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKD 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777888888888888888877777665555443
No 202
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=34.78 E-value=45 Score=25.17 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=16.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 82 SSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
..+|..|++++++++++++..++..|
T Consensus 20 ~~~R~~W~~~~~~~~~~~~~~~~~~~ 45 (439)
T PF00858_consen 20 WFERLFWLLVVVVSFILFIYQIYLLI 45 (439)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776666665544
No 203
>PRK12800 fliF flagellar MS-ring protein; Reviewed
Probab=34.72 E-value=1.7e+02 Score=24.13 Aligned_cols=6 Identities=0% Similarity=0.074 Sum_probs=2.4
Q ss_pred HHHHhC
Q 038503 102 IILIVA 107 (107)
Q Consensus 102 ~~~~~~ 107 (107)
+++++|
T Consensus 47 ~~l~~~ 52 (574)
T PRK12800 47 LAVFFW 52 (574)
T ss_pred HHHHHh
Confidence 333344
No 204
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=34.60 E-value=51 Score=24.47 Aligned_cols=12 Identities=8% Similarity=0.055 Sum_probs=5.4
Q ss_pred chhhHHHHHHHH
Q 038503 83 SSSLSCLLLVIF 94 (107)
Q Consensus 83 ~rk~~~~~~~i~ 94 (107)
.||+|.|+++++
T Consensus 32 WRKrcLY~fvLl 43 (292)
T KOG3950|consen 32 WRKRCLYTFVLL 43 (292)
T ss_pred hHHHHHHHHHHH
Confidence 344444444443
No 205
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=34.24 E-value=76 Score=17.55 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 038503 92 VIFGIILLIVIILI 105 (107)
Q Consensus 92 ~i~~ii~~i~~~~~ 105 (107)
++++.+++++.+++
T Consensus 19 Li~A~vlfi~Gi~i 32 (50)
T PF02038_consen 19 LIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 44444444444443
No 206
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=33.86 E-value=42 Score=25.32 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=4.4
Q ss_pred HHHHHHHHHHhC
Q 038503 96 IILLIVIILIVA 107 (107)
Q Consensus 96 ii~~i~~~~~~~ 107 (107)
|+.+++++.-+|
T Consensus 270 il~vvliiLYiW 281 (295)
T TIGR01478 270 ILTVVLIILYIW 281 (295)
T ss_pred HHHHHHHHHHHH
Confidence 333333333334
No 207
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=33.76 E-value=49 Score=21.82 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038503 87 SCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 87 ~~~~~~i~~ii~~i~~~~ 104 (107)
.|++++++++++++++++
T Consensus 22 GWwll~~lll~~~~~~~~ 39 (146)
T PF14316_consen 22 GWWLLLALLLLLLILLLW 39 (146)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555544444444433
No 208
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.51 E-value=1.6e+02 Score=20.29 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 7 DNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 7 ~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
..++.--...+.++...+..+...+..+..-..++...+.+....++.+-+-...-..........+.+.
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666677777777766666666666666666666666555544444444444444333
No 209
>PRK14710 hypothetical protein; Provisional
Probab=33.39 E-value=75 Score=19.01 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 038503 92 VIFGIILLIVIIL 104 (107)
Q Consensus 92 ~i~~ii~~i~~~~ 104 (107)
.+++|++++++++
T Consensus 14 fifaiii~v~lcv 26 (86)
T PRK14710 14 FIFAIIIIVVLCV 26 (86)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555544
No 210
>PTZ00046 rifin; Provisional
Probab=33.34 E-value=2.3e+02 Score=22.05 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 038503 91 LVIFGIILLIVIIL 104 (107)
Q Consensus 91 ~~i~~ii~~i~~~~ 104 (107)
.-+++|+++||+.+
T Consensus 319 aSiiAIvVIVLIMv 332 (358)
T PTZ00046 319 ASIVAIVVIVLIMV 332 (358)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333343333
No 211
>PHA02690 hypothetical protein; Provisional
Probab=33.23 E-value=1.2e+02 Score=18.57 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038503 53 DDISSNIESSHASTAQAT 70 (107)
Q Consensus 53 d~Ie~nv~~a~~~v~~~~ 70 (107)
|.|++..-....|++.-.
T Consensus 11 ~gi~~Ra~adrrYLeAIq 28 (90)
T PHA02690 11 DGIVERARADRRYLEAIQ 28 (90)
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 334333333333333333
No 212
>PTZ00370 STEVOR; Provisional
Probab=32.94 E-value=44 Score=25.22 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=4.4
Q ss_pred HHHHHHHHHHhC
Q 038503 96 IILLIVIILIVA 107 (107)
Q Consensus 96 ii~~i~~~~~~~ 107 (107)
|+.+++++.-+|
T Consensus 266 il~vvliilYiw 277 (296)
T PTZ00370 266 ILAVVLIILYIW 277 (296)
T ss_pred HHHHHHHHHHHH
Confidence 333333333334
No 213
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.89 E-value=2.4e+02 Score=22.09 Aligned_cols=28 Identities=11% Similarity=0.051 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 038503 38 FKDLAVLVHEQGVMIDDISSNIESSHAS 65 (107)
Q Consensus 38 ~~~l~~~V~~Qge~id~Ie~nv~~a~~~ 65 (107)
...++......+...++...++=.+.+.
T Consensus 107 G~sls~al~~~~~~F~~~~~~~v~~gE~ 134 (397)
T COG1459 107 GKSLSEALAQLPGVFPDLYVAMVAAGER 134 (397)
T ss_pred CCcHHHHHHhCcccCCHHHHHHHHHHHh
Confidence 3444555555555555555554444443
No 214
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=32.83 E-value=95 Score=19.34 Aligned_cols=18 Identities=11% Similarity=-0.031 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhcchh
Q 038503 68 QATTQLAKASKIQKSSSS 85 (107)
Q Consensus 68 ~~~~eL~~A~~~~~~~rk 85 (107)
.|..-|.....|..+.+.
T Consensus 32 ~G~~YL~~~y~y~~sh~W 49 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRW 49 (103)
T ss_pred eHHHHHhhhccccccchh
Confidence 455666666666555443
No 215
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.74 E-value=2.1e+02 Score=21.40 Aligned_cols=53 Identities=26% Similarity=0.452 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQAT 70 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~ 70 (107)
.+=...+..+...+.++.++...++....+|...++.+..++.....-+....
T Consensus 327 ~~~~~~~~~i~~~i~~i~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 379 (408)
T COG0840 327 EETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEELDDVTQENA 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344578888888999999999999999999888888888877777666665
No 216
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=32.68 E-value=1.9e+02 Score=21.89 Aligned_cols=18 Identities=22% Similarity=0.770 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 038503 89 LLLVIFGIILLIVIILIV 106 (107)
Q Consensus 89 ~~~~i~~ii~~i~~~~~~ 106 (107)
++..+++|+++|++++++
T Consensus 258 I~aSiiaIliIVLIMvII 275 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVII 275 (299)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444555555555544
No 217
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=32.36 E-value=3.1e+02 Score=23.14 Aligned_cols=12 Identities=17% Similarity=-0.039 Sum_probs=5.6
Q ss_pred chhhHHHHHHHH
Q 038503 83 SSSLSCLLLVIF 94 (107)
Q Consensus 83 ~rk~~~~~~~i~ 94 (107)
.+...+++.+++
T Consensus 329 ~~~~~~~~~~~~ 340 (914)
T PRK11466 329 GQYSLLLLGMVS 340 (914)
T ss_pred HHHHHHHHHHHH
Confidence 444555444443
No 218
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=32.17 E-value=1.1e+02 Score=17.81 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhC
Q 038503 85 SLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 85 k~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
-.-..+-++++++++++.+++.|
T Consensus 42 ~~GfaiG~~~AlvLv~ip~~l~~ 64 (64)
T PF09472_consen 42 IKGFAIGFLFALVLVGIPILLMF 64 (64)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555566666666666666
No 219
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=31.80 E-value=1.2e+02 Score=18.10 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 47 EQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 47 ~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
.|...+.||=.|++.-.+.+..-++.|+....+
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~~ 40 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEINRA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555555555555555444443
No 220
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.77 E-value=2.1e+02 Score=20.98 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=32.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 5 LLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 5 ~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
.+|.+...-.....+..+.+++.......++.-+.++...+.+=...+-.++..+..+.....++...+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433444444444555555555555555555555444444444444444444444444444333
No 221
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=31.56 E-value=74 Score=20.34 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.+.+.|...+..|+..|..|...|.
T Consensus 32 ~g~f~~A~~~i~eA~~~l~eAH~~QT 57 (105)
T COG1447 32 EGDFEEAEELIQEANDALNEAHHVQT 57 (105)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999988764
No 222
>PF01998 DUF131: Protein of unknown function DUF131; InterPro: IPR002849 This archaebacterial protein family has no known function. The proteins are predicted to contain two transmembrane helices.
Probab=31.44 E-value=1.1e+02 Score=17.70 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 038503 87 SCLLLVIFGIILLIVIILIV 106 (107)
Q Consensus 87 ~~~~~~i~~ii~~i~~~~~~ 106 (107)
.....+++++++.++.++++
T Consensus 44 ~~~~~~ilaiil~i~~~l~~ 63 (64)
T PF01998_consen 44 IAKIAMILAIILMILALLLF 63 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544443
No 223
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=31.09 E-value=2.2e+02 Score=21.07 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038503 51 MIDDISSNIESSHASTAQATTQLAKASKIQKS 82 (107)
Q Consensus 51 ~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~ 82 (107)
|.++|+.++.....++..-.++|..+.+-.-+
T Consensus 179 ~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~ 210 (254)
T KOG2196|consen 179 MAENIDSQLKRLSEDLKQIIKSLNTMSKTVDK 210 (254)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccCcccc
Confidence 77788888888888888877777666554433
No 224
>PRK04406 hypothetical protein; Provisional
Probab=30.86 E-value=1.2e+02 Score=17.97 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 28 QEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 28 e~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
++++..+.+=+.+|-.-+..|...|+.++.-|..-...+..=.++++....
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777788888888888888888888877666655555554433
No 225
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=30.77 E-value=2.9e+02 Score=22.41 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 28 QEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLA 74 (107)
Q Consensus 28 e~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~ 74 (107)
..++-++..+++++.+++.+=...=|.+|..++.-+.+++.-...+.
T Consensus 419 ~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~ 465 (489)
T KOG3684|consen 419 ANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLS 465 (489)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555544444444455555555555554444443
No 226
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.59 E-value=2.4e+02 Score=21.34 Aligned_cols=63 Identities=14% Similarity=0.185 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSS 85 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk 85 (107)
+++.+...+..+..=.......+.+..+.+..++..++........-..++..|.+.....|.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~ 267 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRG 267 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456666777777766677777788888899999999999999999999999999886544443
No 227
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=30.46 E-value=81 Score=24.75 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=12.2
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHHH
Q 038503 78 KIQKSSSSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 78 ~~~~~~rk~~~~~~~i~~ii~~i~~~~ 104 (107)
-|.++.+++..+++.+++++++++++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~W 37 (457)
T TIGR01000 11 FYQKRYHNFSTLVIVPIFLLLVFLVLF 37 (457)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHHHH
Confidence 345555554444444444444444444
No 228
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=30.24 E-value=77 Score=20.06 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=27.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 46 HEQGVMIDDISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 46 ~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
..-+.+++-|+.-++-+..|+..-.++|..|..
T Consensus 64 Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~ 96 (99)
T PF13758_consen 64 RTREQVVDVLSRRIDYVQQNIETLEKQLEAAEN 96 (99)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578899999999999999999999988765
No 229
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=30.13 E-value=2.5e+02 Score=21.32 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=33.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038503 6 LDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSH 63 (107)
Q Consensus 6 ~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~ 63 (107)
+.++.+-....|-+-.+..+.+.+...++|..|.+.+..+.+..+-++++...+....
T Consensus 184 la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 184 LANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344333344444555566667777777777777777666666666666555444433
No 230
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=29.95 E-value=47 Score=18.97 Aligned_cols=17 Identities=0% Similarity=-0.136 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
+-+.+++.++.+...+|
T Consensus 8 ipvsi~l~~v~l~~flW 24 (58)
T COG3197 8 IPVSILLGAVGLGAFLW 24 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444445555
No 231
>COG3162 Predicted membrane protein [Function unknown]
Probab=29.87 E-value=1.5e+02 Score=18.90 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=14.8
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHHH
Q 038503 78 KIQKSSSSLSCLLLVIFGIILLIVII 103 (107)
Q Consensus 78 ~~~~~~rk~~~~~~~i~~ii~~i~~~ 103 (107)
+..+++++..|.+-++++++=+.+++
T Consensus 17 eLv~kr~~Fa~~ltl~flv~Y~~fil 42 (102)
T COG3162 17 ELVRKRRRFAVPLTLIFLVVYFGFIL 42 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677776666655444443
No 232
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=29.70 E-value=58 Score=18.99 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 038503 88 CLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 88 ~~~~~i~~ii~~i~~~~~~~ 107 (107)
..-.+++.+++.+++++..|
T Consensus 18 ~l~~l~lG~~~~vllLW~aW 37 (65)
T TIGR03758 18 AMNTLILGLVLAVLFLWGAW 37 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666677776665
No 233
>PRK04654 sec-independent translocase; Provisional
Probab=29.54 E-value=2.2e+02 Score=20.56 Aligned_cols=53 Identities=4% Similarity=0.117 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVLVHEQ------GVMIDDISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~V~~Q------ge~id~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
.+-+.+..++.+|.++...+... .+.++.+...+..+...+..+..+++.+.+
T Consensus 31 tlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~ 89 (214)
T PRK04654 31 FAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGAR 89 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433221 233444444555555555555555554444
No 234
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=29.46 E-value=2.7e+02 Score=21.64 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 038503 93 IFGIILLIVI 102 (107)
Q Consensus 93 i~~ii~~i~~ 102 (107)
+++|+++|++
T Consensus 316 iIAIvvIVLI 325 (353)
T TIGR01477 316 IIAILIIVLI 325 (353)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 235
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=29.37 E-value=1.9e+02 Score=19.77 Aligned_cols=61 Identities=21% Similarity=0.440 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 9 EITFNEAIIEEREQGI----KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 9 ~~~~~~~~i~er~~~i----~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
+++....+++++...+ +.|+..+..+..+...--.++..=|-.++=+.+++......++.+
T Consensus 88 ~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 88 ELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445556666666665 467777777777766666666666666666666666655555544
No 236
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=28.89 E-value=3.1e+02 Score=22.06 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHAST 66 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v 66 (107)
....+.....++.....+++.-..+|...+..+...++.....+
T Consensus 273 ~s~~v~~~s~els~~~~~ls~~~~~qa~~ieeiaas~eeis~s~ 316 (554)
T PRK15041 273 GANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATV 316 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444444444433333
No 237
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=28.85 E-value=1.9e+02 Score=19.57 Aligned_cols=13 Identities=15% Similarity=0.143 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 038503 34 VNEIFKDLAVLVH 46 (107)
Q Consensus 34 l~~l~~~l~~~V~ 46 (107)
..++..+..++.+
T Consensus 22 ~~e~l~~Y~e~f~ 34 (181)
T PF08006_consen 22 REEILEYYEEYFD 34 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 238
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=28.81 E-value=1.8e+02 Score=19.22 Aligned_cols=23 Identities=9% Similarity=0.317 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038503 52 IDDISSNIESSHASTAQATTQLA 74 (107)
Q Consensus 52 id~Ie~nv~~a~~~v~~~~~eL~ 74 (107)
++.+..++...+..+.+...-+.
T Consensus 89 v~els~~L~~~~~lL~~~v~~ie 111 (131)
T PF10158_consen 89 VNELSQQLSRCQSLLNQTVPSIE 111 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555444444444333
No 239
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=28.64 E-value=2e+02 Score=19.75 Aligned_cols=27 Identities=19% Similarity=0.036 Sum_probs=14.7
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 81 KSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
+++++..|.++.++++=..++.-+.+|
T Consensus 89 ~~~~~~~w~gl~~l~~q~~~l~rLTf~ 115 (180)
T PF04678_consen 89 KRARRLLWGGLALLVVQFGILARLTFW 115 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666555555555444444
No 240
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=28.52 E-value=1.5e+02 Score=18.30 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESS 62 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a 62 (107)
...+++.+.++++.+..+.. +-..||.||..|+.=
T Consensus 44 ~~~l~~~~~~l~~k~~~l~~----~l~~Id~Ie~~V~~L 78 (99)
T PF10046_consen 44 AAGLEKNLEDLNQKYEELQP----YLQQIDQIEEQVTEL 78 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 34566666666666655544 445788887776543
No 241
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.37 E-value=2.9e+02 Score=21.63 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
.+++.+....+.|.++-...-.-||.--+++.-.++..+|.++
T Consensus 109 sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~ 151 (397)
T COG1459 109 SLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEK 151 (397)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4455555555556555555556666666666666666555544
No 242
>PRK09793 methyl-accepting protein IV; Provisional
Probab=28.32 E-value=3.1e+02 Score=21.88 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
..+.....++..-..+++.-..+|...+..+...++.....+...
T Consensus 271 ~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~~~ 315 (533)
T PRK09793 271 QEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQN 315 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555554444444444433333
No 243
>PF03356 Pox_LP_H2: Viral late protein H2; InterPro: IPR005023 This entry represents the late protein H2 found in Vaccinia and other poxviruses. This protein is a highly conserved viral membrane protein found in all sequenced poxviruses, containing an N-terminal transmembrane domain and four conserved cysteines thought to be involved in the formation of intramolecular disulphide bonds []. H2 has been shown to be necessary for entry into the host cell and virus-induced cell-cell fusion, but is not required for virus morphogenesis or the attachment of virus particles to cells. It is part of an entry-fusion complex composed of eight viral membrane proteins [].
Probab=28.28 E-value=99 Score=21.73 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
-+|++++++++.+++.|
T Consensus 31 Tl~ffvlil~iS~llf~ 47 (189)
T PF03356_consen 31 TLCFFVLILIISVLLFW 47 (189)
T ss_pred hHHHHHHHHHHHHHHHh
Confidence 34444444455555444
No 244
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.18 E-value=1.7e+02 Score=18.94 Aligned_cols=50 Identities=10% Similarity=0.251 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLA 74 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~ 74 (107)
++|++.=.++.+-=.+++.+...-.++++++..+......++..|..+|-
T Consensus 32 ~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a~~Ll 81 (128)
T PF06295_consen 32 QELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGAEELL 81 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666666667788888888899999999999999999999998873
No 245
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=28.07 E-value=2.5e+02 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.448 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDI 55 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~I 55 (107)
.+.+.+......+++..+...++..++.-..|
T Consensus 271 ~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~I 302 (306)
T PF04888_consen 271 IKQFKKLMESFQQIMKSISQIIQQSGDTQAQI 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444443
No 246
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=27.88 E-value=71 Score=19.31 Aligned_cols=12 Identities=25% Similarity=0.808 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 038503 90 LLVIFGIILLIV 101 (107)
Q Consensus 90 ~~~i~~ii~~i~ 101 (107)
+++|++|++++|
T Consensus 9 llIIlvIvlllF 20 (78)
T PRK00720 9 WLIVLAVVLLLF 20 (78)
T ss_pred HHHHHHHHHHHh
Confidence 344444444443
No 247
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=27.82 E-value=3.2e+02 Score=22.55 Aligned_cols=44 Identities=7% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Q 038503 58 NIESSHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 58 nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~ 104 (107)
+.......+..-...|+....+.. |..|+.+.+++|+.+++.++
T Consensus 454 ~~~s~~srves~~~~Lk~s~pKan---K~LWIsvAliVLLAaLlSfL 497 (538)
T PF05781_consen 454 DKSSRYSRVESWASYLKTSFPKAN---KVLWISVALIVLLAALLSFL 497 (538)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 248
>PRK00523 hypothetical protein; Provisional
Probab=27.82 E-value=1.2e+02 Score=18.03 Aligned_cols=7 Identities=43% Similarity=0.050 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 038503 88 CLLLVIF 94 (107)
Q Consensus 88 ~~~~~i~ 94 (107)
|+++.++
T Consensus 7 ~I~l~i~ 13 (72)
T PRK00523 7 ALGLGIP 13 (72)
T ss_pred HHHHHHH
Confidence 3333333
No 249
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=27.64 E-value=88 Score=20.03 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhC
Q 038503 85 SLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 85 k~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
++-...++..++++++++.-.+|
T Consensus 75 ~wn~~al~Ft~~i~~iiv~GSlW 97 (109)
T PRK10582 75 GWNMTAFVFTVLIIAILVVGSIW 97 (109)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444555554444
No 250
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=27.61 E-value=3e+02 Score=21.52 Aligned_cols=9 Identities=11% Similarity=-0.093 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 038503 71 TQLAKASKI 79 (107)
Q Consensus 71 ~eL~~A~~~ 79 (107)
++......|
T Consensus 176 ~~~~~~E~y 184 (406)
T PF04906_consen 176 EQVSFYEYY 184 (406)
T ss_pred HHHHHHHHH
Confidence 333333333
No 251
>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length. The function of this family is unknown.
Probab=27.37 E-value=1e+02 Score=19.00 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLV 45 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V 45 (107)
|++|...|..+-++|.||+.-.
T Consensus 51 IrELN~NI~rVv~lY~dLs~sF 72 (87)
T PF07011_consen 51 IRELNGNISRVVDLYSDLSSSF 72 (87)
T ss_pred HHHHHhhHHHHHHHHHHHhHHH
Confidence 6788888888888888887654
No 252
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.22 E-value=5.1e+02 Score=24.08 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQ-------EQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 15 ~~i~er~~~i~~le-------~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
..++++-++++++- .++..+...+..+-..+..=.+++-.+|.++.+..+.+..+.++|....+.
T Consensus 1204 ~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1204 LDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 34555556665554 456666666677777777777888888888888877777777777665554
No 253
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=27.18 E-value=2.6e+02 Score=20.59 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 038503 63 HASTAQATTQLAKASKIQKS 82 (107)
Q Consensus 63 ~~~v~~~~~eL~~A~~~~~~ 82 (107)
.++-++-.+..+++.+-+|+
T Consensus 36 ~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 36 EEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33333333334444444444
No 254
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=27.02 E-value=3.2e+02 Score=21.71 Aligned_cols=42 Identities=17% Similarity=0.229 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHAST 66 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v 66 (107)
..+.....++..-..+++.-..+|...+..+...++.....+
T Consensus 273 ~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~ 314 (553)
T PRK15048 273 DAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATV 314 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555554444444333333
No 255
>PRK10132 hypothetical protein; Provisional
Probab=26.92 E-value=1.7e+02 Score=18.57 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038503 52 IDDISSNIESSHASTA 67 (107)
Q Consensus 52 id~Ie~nv~~a~~~v~ 67 (107)
=++++.....+.+...
T Consensus 47 R~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 47 RRKAQALLKETRARMH 62 (108)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555666554444
No 256
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=26.78 E-value=89 Score=15.14 Aligned_cols=9 Identities=22% Similarity=0.478 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 038503 88 CLLLVIFGI 96 (107)
Q Consensus 88 ~~~~~i~~i 96 (107)
||+.-++++
T Consensus 2 WYfaWilG~ 10 (28)
T PF08173_consen 2 WYFAWILGV 10 (28)
T ss_pred hhHHHHHHH
Confidence 444444433
No 257
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=26.75 E-value=32 Score=26.63 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 038503 71 TQLAKASKIQKSSSSLSCLLLVIFGIILLI 100 (107)
Q Consensus 71 ~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i 100 (107)
++.....+.+-+..|+..+.+.++++++++
T Consensus 181 ~~~~~V~Kk~~k~~K~~~i~l~~l~v~l~~ 210 (359)
T PF10140_consen 181 KTYILVPKKKWKIFKYASIGLSILLVLLLI 210 (359)
T ss_dssp ------------------------------
T ss_pred hhheEecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344444334444433344444443333
No 258
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.74 E-value=1.1e+02 Score=19.29 Aligned_cols=24 Identities=25% Similarity=0.240 Sum_probs=12.7
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHH
Q 038503 81 KSSSSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~~i~~~~ 104 (107)
|++-++.=.++.+.+||.++...+
T Consensus 22 kkaEr~~q~ilti~aiVg~i~Gf~ 45 (101)
T KOG4112|consen 22 KKAERFQQLILTIGAIVGFIYGFA 45 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444556666666665543
No 259
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=26.73 E-value=2.8e+02 Score=20.95 Aligned_cols=58 Identities=14% Similarity=0.334 Sum_probs=33.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038503 7 DNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATT 71 (107)
Q Consensus 7 ~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~ 71 (107)
+.++.-....+++...++.+++..+..+..-|.+.- .-.+.++..++.+...+.+|.+
T Consensus 227 ~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~-------~e~~~l~~~~~~~~~kl~rA~~ 284 (344)
T PF12777_consen 227 EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ-------KEKQELEEEIEETERKLERAEK 284 (344)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhccHHH
Confidence 344455556666666667777766666665555432 2244555555556666665554
No 260
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=26.70 E-value=82 Score=27.92 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=10.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 038503 83 SSSLSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 83 ~rk~~~~~~~i~~ii~~i~~~~~ 105 (107)
..++..+.+++++|+++.+++++
T Consensus 1069 ~yr~~il~~l~ililll~l~~fl 1091 (1105)
T KOG1326|consen 1069 RYRWYILLLLLILILLLLLALFL 1091 (1105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 261
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.48 E-value=89 Score=23.17 Aligned_cols=16 Identities=25% Similarity=0.864 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 038503 88 CLLLVIFGIILLIVII 103 (107)
Q Consensus 88 ~~~~~i~~ii~~i~~~ 103 (107)
+++.++++++++++.+
T Consensus 198 ~i~f~llgllfliiai 213 (256)
T PF09788_consen 198 AIIFFLLGLLFLIIAI 213 (256)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3343444444334333
No 262
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=26.33 E-value=64 Score=24.42 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 038503 84 SSLSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 84 rk~~~~~~~i~~ii~~i~~~~~ 105 (107)
.+.+-+++++.+|++++|+.++
T Consensus 275 ~~l~piil~IG~vl~i~~Ig~~ 296 (305)
T PF04639_consen 275 DSLLPIILIIGGVLLIVFIGYF 296 (305)
T ss_pred hhhhHHHHHHHHHHHHHHhhhe
Confidence 3444455555566665555554
No 263
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=26.30 E-value=2.6e+02 Score=20.42 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhh
Q 038503 67 AQATTQLAKASKIQK 81 (107)
Q Consensus 67 ~~~~~eL~~A~~~~~ 81 (107)
.+..++++.++++.|
T Consensus 210 ~~t~~~lk~~~q~~K 224 (295)
T PF06814_consen 210 SKTIRDLKARRQTAK 224 (295)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445544444443
No 264
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=26.29 E-value=1.7e+02 Score=24.01 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=11.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 83 SSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 83 ~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
+++.++.++.++++++.+++++++|
T Consensus 20 ~~~~ki~l~~~~~~~v~~~v~l~l~ 44 (545)
T COG1766 20 TKKQKIVLLGAGAALVAVLVALLLW 44 (545)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhee
Confidence 3344444444444444444444444
No 265
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=26.24 E-value=1.9e+02 Score=18.73 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
++...+-++....-+..--......=...-..|+..++.+..++.....+|..|....+
T Consensus 54 ~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~ 112 (139)
T PF05615_consen 54 ELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ 112 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444333344444455667999999999999999999999887643
No 266
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=26.17 E-value=44 Score=29.47 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC
Q 038503 86 LSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 86 ~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
|.+++.++++++++.++++++|
T Consensus 979 wiIi~svl~GLLlL~llv~~Lw 1000 (1030)
T KOG3637|consen 979 WIIILSVLGGLLLLALLVLLLW 1000 (1030)
T ss_pred eeehHHHHHHHHHHHHHHHHHH
Confidence 3344555567777888888887
No 267
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=26.08 E-value=1.3e+02 Score=18.17 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=15.1
Q ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHH
Q 038503 75 KASKIQKSSSSLSCLLLVIFGIILLIV 101 (107)
Q Consensus 75 ~A~~~~~~~rk~~~~~~~i~~ii~~i~ 101 (107)
++..|=|++.+..+.++.+=+++.+++
T Consensus 2 ~~~~yWr~n~rl~~~lL~iW~vvsfg~ 28 (81)
T PF13937_consen 2 PARAYWRKNLRLIAILLAIWFVVSFGV 28 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555555555554444
No 268
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=26.06 E-value=1.5e+02 Score=20.56 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=10.9
Q ss_pred HHhhcchhhHHHHHHHHHHHHHH
Q 038503 78 KIQKSSSSLSCLLLVIFGIILLI 100 (107)
Q Consensus 78 ~~~~~~rk~~~~~~~i~~ii~~i 100 (107)
.|+|+.|+-...++..++++.+.
T Consensus 10 ~YRk~~n~v~~~~v~~lai~sl~ 32 (165)
T PF11286_consen 10 RYRKHLNRVIVACVASLAILSLA 32 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665444444444443333
No 269
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=26.05 E-value=2.5e+02 Score=23.89 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVH 46 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~ 46 (107)
...-.++|+++.-||..|.||-..|.
T Consensus 260 s~sse~~ERDv~iLNh~fDDIE~Fva 285 (721)
T KOG3557|consen 260 SLSSEKAERDVDILNHVFDDIESFVA 285 (721)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34467889999999999998877763
No 270
>COG3152 Predicted membrane protein [Function unknown]
Probab=26.05 E-value=1.1e+02 Score=20.02 Aligned_cols=19 Identities=16% Similarity=0.037 Sum_probs=9.9
Q ss_pred hcchhhHHHHHHHHHHHHH
Q 038503 81 KSSSSLSCLLLVIFGIILL 99 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~~ 99 (107)
|.+|+-.|+..++.+++.+
T Consensus 17 R~~R~~fW~~~L~~~ii~~ 35 (125)
T COG3152 17 RIGRSEFWYVILFNLIIGV 35 (125)
T ss_pred ccchHHHHHHHHHHHHHHH
Confidence 3456666655555544443
No 271
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=25.97 E-value=2.5e+02 Score=23.10 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.1
Q ss_pred HHHHHHhC
Q 038503 100 IVIILIVA 107 (107)
Q Consensus 100 i~~~~~~~ 107 (107)
+++++++|
T Consensus 40 ~~~~~~~~ 47 (552)
T PRK07193 40 AAIVLSLW 47 (552)
T ss_pred HHHHHHHh
Confidence 33333444
No 272
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=25.97 E-value=81 Score=18.81 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 038503 91 LVIFGIILLI 100 (107)
Q Consensus 91 ~~i~~ii~~i 100 (107)
+++++|++++
T Consensus 10 liIl~Ivlll 19 (73)
T PRK02958 10 LIVLVIVVLV 19 (73)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 273
>PF03581 Herpes_UL33: Herpesvirus UL33-like protein; InterPro: IPR005208 This is a family of Herpesvirus proteins including UL33 P10217 from SWISSPROT,UL51 P16792 from SWISSPROT. The proteins in this family are involved in packaging viral DNA.; GO: 0019073 viral DNA genome packaging
Probab=25.94 E-value=1.3e+02 Score=17.99 Aligned_cols=27 Identities=7% Similarity=0.415 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFK 39 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~ 39 (107)
|.+.+.+|.+.+..+=..+.++++++.
T Consensus 48 H~~vl~~K~e~~~~vi~K~ld~~~IL~ 74 (75)
T PF03581_consen 48 HGEVLERKRERFAQVINKFLDLHQILE 74 (75)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567888999999999999999998865
No 274
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.94 E-value=1.1e+02 Score=17.31 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038503 88 CLLLVIFGIILLIVIIL 104 (107)
Q Consensus 88 ~~~~~i~~ii~~i~~~~ 104 (107)
|.+++++++++..+.++
T Consensus 31 ~~Ll~~li~Vv~gl~ll 47 (55)
T PF11293_consen 31 WRLLIVLIVVVIGLGLL 47 (55)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 43444444444444443
No 275
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.92 E-value=3.1e+02 Score=21.19 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
.+++|++-=.-+|+-|..+-..-..-...++.+......+...+..-..+|.+
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~ 305 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAE 305 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444444444444444444555555555555444444444433
No 276
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=25.90 E-value=3.2e+02 Score=21.28 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Q 038503 12 FNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQG-VMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSL 86 (107)
Q Consensus 12 ~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qg-e~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~ 86 (107)
.|-+.-.+..+.-++|+....+.+.+...+-.-+.+-. ..+|.++.-++.+..++-....++.++....++.+..
T Consensus 208 ~H~~lr~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~ 283 (377)
T PF14728_consen 208 QHFELRQELKELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGAS 283 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333444444444445544444444444433 3789999999999999999999999998887665543
No 277
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=25.89 E-value=2.3e+02 Score=23.17 Aligned_cols=6 Identities=17% Similarity=0.218 Sum_probs=2.3
Q ss_pred HHHHHH
Q 038503 71 TQLAKA 76 (107)
Q Consensus 71 ~eL~~A 76 (107)
.++...
T Consensus 10 ~~~~~~ 15 (542)
T PRK06007 10 EKLKEF 15 (542)
T ss_pred HHHHHH
Confidence 334333
No 278
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=25.43 E-value=99 Score=15.23 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 038503 88 CLLLVIFGI 96 (107)
Q Consensus 88 ~~~~~i~~i 96 (107)
||+.-++++
T Consensus 2 WYfaWilG~ 10 (30)
T TIGR02106 2 WYFAWILGT 10 (30)
T ss_pred hhHHHHHHH
Confidence 444444433
No 279
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=25.38 E-value=71 Score=20.64 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=10.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 83 SSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 83 ~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
..++-....++.++++++++.-.+|
T Consensus 75 eg~w~~~~~iFt~~i~vivvvGS~W 99 (111)
T COG3125 75 EGRWNMGALIFTIFIIVIVVVGSIW 99 (111)
T ss_pred ccceehHHHHHHHHHHHHHHHHHHH
Confidence 3334343444444444444444444
No 280
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.30 E-value=4e+02 Score=22.12 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038503 14 EAIIEEREQGIKEIQEQ----ISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKS 82 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~----i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~ 82 (107)
.+.+++|-..+..|.+. +.++-+-...+... =+.+++.+.+...-+..+.....++.++.+.=..
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~e----l~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEE----LAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777666665554 34444433333333 3345555555555555555555555555444333
No 281
>PRK11901 hypothetical protein; Reviewed
Probab=25.19 E-value=86 Score=24.07 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 038503 87 SCLLLVIFGIILLIV 101 (107)
Q Consensus 87 ~~~~~~i~~ii~~i~ 101 (107)
++|.+.|++++++|+
T Consensus 38 ~MiGiGilVLlLLIi 52 (327)
T PRK11901 38 MMIGIGILVLLLLII 52 (327)
T ss_pred HHHHHHHHHHHHHHH
Confidence 343433333333333
No 282
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.98 E-value=2.2e+02 Score=19.06 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=16.9
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHH
Q 038503 77 SKIQKSSSSLSCLLLVIFGIILLIVII 103 (107)
Q Consensus 77 ~~~~~~~rk~~~~~~~i~~ii~~i~~~ 103 (107)
.+.-+.+++..|++.--++|+++.+++
T Consensus 75 kk~~~fsg~a~Wi~tTt~lIL~vP~i~ 101 (136)
T KOG4111|consen 75 KKLYSFSGKAAWIATTTFLILVVPLIF 101 (136)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 333445777778777666666665554
No 283
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=24.92 E-value=3.4e+02 Score=22.83 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=31.9
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 5 LLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQG 49 (107)
Q Consensus 5 ~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qg 49 (107)
.++..+....+.+++|+..+..+.+++..+......+..+...+.
T Consensus 28 ~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r 72 (732)
T KOG0614|consen 28 QLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLR 72 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
Confidence 345556666777888888888888888887777777766665443
No 284
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=24.92 E-value=2.8e+02 Score=20.18 Aligned_cols=48 Identities=15% Similarity=0.338 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQAT 70 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~ 70 (107)
.+..+..++..+..+..++...|..|.+.+......++....+.....
T Consensus 23 ~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~ 70 (243)
T PF07160_consen 23 TLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQ 70 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777777777777666666666666555443
No 285
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=24.89 E-value=5.1e+02 Score=23.28 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFK 39 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~ 39 (107)
....+++...++..+++.+.++.+.|.
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555554
No 286
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=24.81 E-value=79 Score=24.70 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=8.2
Q ss_pred hcchhhHHHHHHHHHHHH
Q 038503 81 KSSSSLSCLLLVIFGIIL 98 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~ 98 (107)
++.....+++.=++++++
T Consensus 344 ~~~~~~~ii~~N~v~lll 361 (374)
T TIGR03503 344 DSKFWIIIIVGNVVILLL 361 (374)
T ss_pred hhhhhHhhHhhhhhhhhh
Confidence 344444455544444443
No 287
>COG1426 Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]
Probab=24.78 E-value=95 Score=23.11 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=10.8
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHH
Q 038503 79 IQKSSSSLSCLLLVIFGIILLIVI 102 (107)
Q Consensus 79 ~~~~~rk~~~~~~~i~~ii~~i~~ 102 (107)
++++....+++.++++.++++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~i~~~~~ 118 (284)
T COG1426 95 LKKRDGLVLLLTLLLLLVILGLLG 118 (284)
T ss_pred hhcccchhhhHHHHHHHHHHHHHH
Confidence 344444444555444444443333
No 288
>TIGR02847 CyoD cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant.
Probab=24.73 E-value=1.1e+02 Score=19.10 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=10.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 84 SSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 84 rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
.++....++..++++++++.-.+|
T Consensus 63 ~~~n~~~l~Ft~~i~~iiv~GSiW 86 (96)
T TIGR02847 63 QRWNLISLLFTILIIFILIGGSIW 86 (96)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444
No 289
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.65 E-value=3e+02 Score=20.50 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 20 r~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
|.-++..+++.+.. ....+...+..=..+++++...-.+-...+++-..+|.++.+.=
T Consensus 156 r~~e~~~iE~~l~~---ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL 213 (267)
T PF10234_consen 156 RPLELNEIEKALKE---AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRL 213 (267)
T ss_pred CCcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677766654 34455556666667777777777777777888888887777653
No 290
>PRK10869 recombination and repair protein; Provisional
Probab=24.63 E-value=3.9e+02 Score=21.80 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 15 AIIEEREQGIKEIQEQIS----EVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~----~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.+++|-..+.+|.+.-. ++-.-..++.. +=+.+++.+.+...-.........++.++...-.
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~----eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS 365 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLE----EQQQLDDQEDDLETLALAVEKHHQQALETAQKLH 365 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----HHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655433 33333333333 3334455555555555555555555555444333
No 291
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=24.49 E-value=3.4e+02 Score=21.12 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhC
Q 038503 94 FGIILLIVIILIVA 107 (107)
Q Consensus 94 ~~ii~~i~~~~~~~ 107 (107)
++++..++.+++.|
T Consensus 328 l~Vi~~ilSlli~~ 341 (471)
T PF04791_consen 328 LAVIFAILSLLIVW 341 (471)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555544
No 292
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=24.46 E-value=4e+02 Score=21.85 Aligned_cols=56 Identities=23% Similarity=0.362 Sum_probs=28.7
Q ss_pred hhhhhhhhh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHH---------HHHHHHHHhhHHHHHHHHH
Q 038503 3 VVLLDNEIT-FNEAIIEEREQGIKEIQE-QISEVNEIFK---------DLAVLVHEQGVMIDDISSN 58 (107)
Q Consensus 3 ~~~~~~~~~-~~~~~i~er~~~i~~le~-~i~~l~~l~~---------~l~~~V~~Qge~id~Ie~n 58 (107)
++.++.... .-.+++++|+.+++++.+ .-.++....+ +++.+...|.+....++.+
T Consensus 109 LL~LE~~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a~q~Lg~~ltd~dIN~laaqH~Ee~q~ie~k 175 (510)
T PF10154_consen 109 LLQLEHNYAKAVSELIQARDQELKKLQERQTEEMEKAMQKLGISLTDRDINHLAAQHFEEQQRIESK 175 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 344444322 236788999999885542 2223333322 3555555555555544433
No 293
>COG5375 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.39 E-value=92 Score=22.46 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 72 QLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 72 eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
....|.++.++=|+.+..+.++.+++++.+..+..|
T Consensus 21 ~y~~a~Rhs~rVr~Lki~lpl~a~~~a~~fi~~s~~ 56 (216)
T COG5375 21 AYARARRHSRRVRRLKIGLPLAAGGLALAFIAQSVW 56 (216)
T ss_pred HHHHHhhhccceeeeeehHHHHHHHHHHhhhhhhhh
Confidence 455677776666666777777777777777766665
No 294
>KOG3443 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.36 E-value=2.6e+02 Score=19.59 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=35.0
Q ss_pred HHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 33 EVNEIFK--DLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 33 ~l~~l~~--~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
.|-.+++ +...+|+.|-.|++++|..-+-.-+--.-+.+.+..|.+...
T Consensus 23 sLls~vn~~tv~~iI~aqkQml~rfektnemllNc~~l~~~rl~~as~r~l 73 (184)
T KOG3443|consen 23 SLLSMVNKRTVLEIIHAQKQMLERFEKTNEMLLNCNKLSVKRLDLASERFL 73 (184)
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443 467789999999999998777776666777777777766543
No 295
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.22 E-value=1.6e+02 Score=17.49 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 038503 88 CLLLVIFGI 96 (107)
Q Consensus 88 ~~~~~i~~i 96 (107)
+++++++++
T Consensus 6 ail~ivl~l 14 (71)
T COG3763 6 AILLIVLAL 14 (71)
T ss_pred HHHHHHHHH
Confidence 333333333
No 296
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=24.15 E-value=1.3e+02 Score=19.19 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=8.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 038503 83 SSSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 83 ~rk~~~~~~~i~~ii~~i~~~~ 104 (107)
+|.|.+...++++.+.+.++|+
T Consensus 14 g~sW~~LVGVv~~al~~SlLIa 35 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIA 35 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHH
Confidence 4444443333333344444443
No 297
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=23.90 E-value=3.4e+02 Score=20.88 Aligned_cols=49 Identities=10% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
|.+..+-...+..|.....+|...+....+.++.++.++......+..-
T Consensus 328 H~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n 376 (388)
T PF04912_consen 328 HEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKN 376 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555666666666667777777777776654444444433
No 298
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=23.77 E-value=1.7e+02 Score=17.49 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
+.+|...+..+..+...+++- .+-.+.-++|...+..+..-+......+.+.
T Consensus 5 l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l 56 (102)
T PF14523_consen 5 LFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKL 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555444444432 2333344444444444444444444444443
No 299
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.70 E-value=2.2e+02 Score=18.60 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 31 ISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 31 i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+..|.+=..-+-.+--+-|.-++.=..-++.-.+.......-|..+-..-+
T Consensus 38 ~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~ 88 (118)
T KOG3385|consen 38 AESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLK 88 (118)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 333433334444444444444444444444444555555555555554433
No 300
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=23.70 E-value=1.5e+02 Score=16.69 Aligned_cols=15 Identities=13% Similarity=0.629 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIF 38 (107)
Q Consensus 24 i~~le~~i~~l~~l~ 38 (107)
++++++++.++-.+|
T Consensus 30 ve~i~envk~ll~lY 44 (55)
T PF05377_consen 30 VEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 301
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.68 E-value=3.3e+02 Score=20.65 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEI 37 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l 37 (107)
.+-+.++.+.|.++++.+.++..=
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~~~ 103 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLKDQ 103 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555433
No 302
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=23.67 E-value=64 Score=25.58 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 038503 91 LVIFGIILLIVI 102 (107)
Q Consensus 91 ~~i~~ii~~i~~ 102 (107)
+++++++++++.
T Consensus 36 a~Vl~iIii~~~ 47 (416)
T PF04415_consen 36 AAVLIIIIIFIV 47 (416)
T ss_pred hhhHhHHHHHHH
Confidence 334444433333
No 303
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=23.62 E-value=1.4e+02 Score=17.65 Aligned_cols=9 Identities=44% Similarity=0.648 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 038503 90 LLVIFGIIL 98 (107)
Q Consensus 90 ~~~i~~ii~ 98 (107)
++.+.+++.
T Consensus 16 il~~~~iis 24 (76)
T PF06645_consen 16 ILIISAIIS 24 (76)
T ss_pred HHHHHHHHH
Confidence 333333333
No 304
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.50 E-value=3.3e+02 Score=20.63 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=21.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 7 DNEITFNEAIIEEREQGIKEIQEQISEVNEI 37 (107)
Q Consensus 7 ~~~~~~~~~~i~er~~~i~~le~~i~~l~~l 37 (107)
...+.-+...+.+.+.+++.+...+......
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666778888888888888887655433
No 305
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.43 E-value=5.5e+02 Score=23.15 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503 16 IIEEREQGIKEIQEQISEVNE----------IFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS 84 (107)
Q Consensus 16 ~i~er~~~i~~le~~i~~l~~----------l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r 84 (107)
.+.+....+.+....|.++.. ...++...+..++..|+.-+.-.+..++.++....+.....++-...+
T Consensus 704 ~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~ 782 (1074)
T KOG0250|consen 704 HIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGR 782 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555666655 356677778888888888888888888888888887777776655444
No 306
>PF01616 Orbi_NS3: Orbivirus NS3; InterPro: IPR002565 This is a family of Orbivirus non structural protein of unknown function, but which may play a role in release of the virus from infected cells [].
Probab=23.39 E-value=2.8e+02 Score=19.71 Aligned_cols=6 Identities=17% Similarity=0.025 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038503 50 VMIDDI 55 (107)
Q Consensus 50 e~id~I 55 (107)
+.+-.|
T Consensus 62 ~~~R~I 67 (195)
T PF01616_consen 62 ERTRQI 67 (195)
T ss_pred HHHHHH
Confidence 333333
No 307
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.23 E-value=1.4e+02 Score=22.71 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=21.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 3 VVLLDNEITFNEAIIEEREQGIKEIQEQISEV 34 (107)
Q Consensus 3 ~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l 34 (107)
+...+.|+...++.++.|.+++++=|+.++.+
T Consensus 62 ~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~~ 93 (313)
T KOG3088|consen 62 LAKKQAELLKKQEELRRKEQELDRRERALARA 93 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 44456666666777777777777777777663
No 308
>PF13215 DUF4023: Protein of unknown function (DUF4023)
Probab=22.88 E-value=1.1e+02 Score=15.95 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 038503 59 IESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 59 v~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
|+++.+++++-+..=.++.+.++
T Consensus 1 MenT~efv~Kl~e~Q~K~e~Nk~ 23 (38)
T PF13215_consen 1 MENTHEFVEKLNETQEKQEKNKK 23 (38)
T ss_pred CccHHHHHHHHHHHHHHHHHHHh
Confidence 35677788887777777776654
No 309
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=22.80 E-value=3.1e+02 Score=20.00 Aligned_cols=63 Identities=14% Similarity=0.354 Sum_probs=39.2
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 038503 15 AIIEEREQGIK---EIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTA----QATTQLAKAS 77 (107)
Q Consensus 15 ~~i~er~~~i~---~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~----~~~~eL~~A~ 77 (107)
.++-.|+.+++ ++...-....+.+..+-..|+...+.|..++.|...|+.-+. .|+..|+...
T Consensus 50 ~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~ 119 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIK 119 (272)
T ss_pred HHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555543 344455666777777778888888888888888877765444 3444444433
No 310
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.67 E-value=5.6e+02 Score=22.94 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
+.-....+.+..+++..+...+.++..-..........-...+.+++..+............++....
T Consensus 255 ~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 322 (1163)
T COG1196 255 LEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELE 322 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555555555555555555444444455677777777777777777666654444
No 311
>PF01130 CD36: CD36 family; InterPro: IPR002159 CD36 is a transmembrane, highly glycosylated, 88kDa glycoprotein expressed by monocytes, macrophages, platelets, microvascular endothelial cells and adipose tissues. Platelet glycoprotein IV (GP IV)(GPIIIb) (CD36 antigen) is also called GPIV, OKM5-antigen or PASIV. CD36 recognises oxidized low density lipoprotein, long chain fatty acids, anionic phospholipids, collagen types I, IV and V, thrombospondin (TSP) and Plasmodium falciparum infected erythrocytes. The recognition of apoptotic neutrophils is in co-operation with TSP and avb3. Other ligands may still be unknown. CD36 is a scavenger receptor for oxidized LDL and shed photoreceptor outer segments and in recognition and phagocytosis of apoptotic cells and is the cell adhesion molecule in platelet adhesion and aggregation, platelet-monocyte and platelet-tumor cell interaction []. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0007155 cell adhesion, 0016020 membrane
Probab=22.63 E-value=2.4e+02 Score=22.22 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038503 87 SCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 87 ~~~~~~i~~ii~~i~~~~ 104 (107)
..+++++++++++++.++
T Consensus 446 ~~~~~~~~G~~~l~~~i~ 463 (467)
T PF01130_consen 446 LQIILIALGIILLLLSIV 463 (467)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 312
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=22.28 E-value=1.7e+02 Score=16.82 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=9.1
Q ss_pred HHHHHHhhHHHHHHHHHHHH
Q 038503 42 AVLVHEQGVMIDDISSNIES 61 (107)
Q Consensus 42 ~~~V~~Qge~id~Ie~nv~~ 61 (107)
..-+..-..-+|+++..++.
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~ 24 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDK 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555444433
No 313
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=22.13 E-value=3.4e+02 Score=20.22 Aligned_cols=54 Identities=13% Similarity=0.230 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 20 r~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
+.+..++|.+...++.+=|..+...+..=|..++..-.+.+.+.....++...+
T Consensus 231 ~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~~ 284 (304)
T PF02646_consen 231 QNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGNI 284 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345556666666666666666666666666666666666666666666665443
No 314
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=22.09 E-value=2.3e+02 Score=18.30 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 038503 86 LSCLLLVIFGIILLIV 101 (107)
Q Consensus 86 ~~~~~~~i~~ii~~i~ 101 (107)
+...+..++.+++-++
T Consensus 26 k~yviGFiLSiiLT~I 41 (110)
T TIGR02908 26 KKQIVTFALMIFLTLI 41 (110)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 315
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.94 E-value=3.8e+02 Score=20.66 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVL----VHEQGVMIDDISSNIESSHASTAQATTQ 72 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~----V~~Qge~id~Ie~nv~~a~~~v~~~~~e 72 (107)
.|.+...+++++-..+... -.+..+.++.++.++..+......+...
T Consensus 40 sI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~ 90 (330)
T PF07851_consen 40 SISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAF 90 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 3444444455555555444 2344566677777777766655555444
No 316
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=21.82 E-value=1.8e+02 Score=16.99 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 17 i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+.+=...+..|...+.+|..+....-.-...-.+.=+.++.-+..+..........|+...+.
T Consensus 9 v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 9 VQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666666655544443112333445555555555555555555444443
No 317
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=21.81 E-value=1e+02 Score=16.89 Aligned_cols=9 Identities=22% Similarity=0.083 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 038503 86 LSCLLLVIF 94 (107)
Q Consensus 86 ~~~~~~~i~ 94 (107)
+.|+++++.
T Consensus 4 ky~wlvvfa 12 (53)
T PF10831_consen 4 KYWWLVVFA 12 (53)
T ss_pred eehhHHHHH
Confidence 344444333
No 318
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=21.72 E-value=1.1e+02 Score=18.37 Aligned_cols=6 Identities=50% Similarity=0.827 Sum_probs=2.2
Q ss_pred HHHHHH
Q 038503 95 GIILLI 100 (107)
Q Consensus 95 ~ii~~i 100 (107)
+|++++
T Consensus 14 vIvlLl 19 (75)
T PRK04561 14 VIVLLV 19 (75)
T ss_pred HHHHHH
Confidence 333333
No 319
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=21.68 E-value=1.1e+02 Score=18.26 Aligned_cols=9 Identities=44% Similarity=0.899 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 038503 92 VIFGIILLI 100 (107)
Q Consensus 92 ~i~~ii~~i 100 (107)
+|++|++++
T Consensus 11 iIl~i~lll 19 (74)
T PRK01833 11 IIVAIIVLL 19 (74)
T ss_pred HHHHHHHHH
Confidence 333333333
No 320
>TIGR02968 succ_dehyd_anc succinate dehydrogenase, hydrophobic membrane anchor protein. In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex.
Probab=21.53 E-value=2.1e+02 Score=17.58 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 65 STAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 65 ~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
+.-.|.+.+-.=.-+..+.|.....+..++++...+..++.+|
T Consensus 63 H~~~Glr~ii~Dy~~~~~~r~~l~~~~~~~~~~~~~~~~~~i~ 105 (105)
T TIGR02968 63 HAWIGMRVVLEDYVKPEGLRLVLQVLIILFLVAYLIWGAFILW 105 (105)
T ss_pred HHHHhHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444555543333222333444445555556666666666655
No 321
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=21.39 E-value=53 Score=25.56 Aligned_cols=17 Identities=12% Similarity=-0.025 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
+.+++||..++.++.||
T Consensus 374 vavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 374 VAVVVVVGGLVGFLCWW 390 (397)
T ss_pred ehhHHHHHHHHHHHhhh
Confidence 44455566666777777
No 322
>COG4499 Predicted membrane protein [Function unknown]
Probab=21.33 E-value=1.9e+02 Score=22.99 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 038503 50 VMIDDISSNIES 61 (107)
Q Consensus 50 e~id~Ie~nv~~ 61 (107)
+.+|.|-+=++.
T Consensus 185 ~Tld~l~e~i~e 196 (434)
T COG4499 185 ETLDDLAEFIDE 196 (434)
T ss_pred hhHHHHHHHHHH
Confidence 444555444444
No 323
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.32 E-value=99 Score=18.32 Aligned_cols=17 Identities=24% Similarity=0.618 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
.++.++++.+++++..|
T Consensus 22 ~li~g~~~avllLW~aW 38 (76)
T PF11660_consen 22 LLILGILFAVLLLWAAW 38 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555554
No 324
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=21.28 E-value=1.8e+02 Score=16.58 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 16 IIEEREQGIKEIQEQISEVNEIFKDLAVLV 45 (107)
Q Consensus 16 ~i~er~~~i~~le~~i~~l~~l~~~l~~~V 45 (107)
..++|+.=+++|..++.++-.-++.|+.-+
T Consensus 3 Fe~qR~~Li~eI~~~~e~vl~nlN~LNRsL 32 (58)
T PF08649_consen 3 FERQRDRLIQEISESMESVLNNLNALNRSL 32 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345666667777777776666666655443
No 325
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=21.26 E-value=1.8e+02 Score=17.99 Aligned_cols=10 Identities=20% Similarity=0.723 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 038503 93 IFGIILLIVI 102 (107)
Q Consensus 93 i~~ii~~i~~ 102 (107)
.+++.++.++
T Consensus 48 ~FV~~lF~iL 57 (90)
T PF15183_consen 48 AFVVFLFLIL 57 (90)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 326
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=21.15 E-value=3e+02 Score=19.25 Aligned_cols=51 Identities=24% Similarity=0.231 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
+.+..+.+++..+.++..--..+...-..=..-+-+....++.....+..+
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666655444444443333334444444444444444433
No 327
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=20.83 E-value=1.7e+02 Score=21.41 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 038503 51 MIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSC 88 (107)
Q Consensus 51 ~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~ 88 (107)
.+++|-..+++=...++.|.++|.+-.+...+.++|..
T Consensus 91 ~v~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~ 128 (250)
T COG2966 91 EVNRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLV 128 (250)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHH
Confidence 46677777777778888999999888877666666544
No 328
>PF12409 P5-ATPase: P5-type ATPase cation transporter
Probab=20.83 E-value=1.5e+02 Score=18.72 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=4.8
Q ss_pred HHHHHHHHHhC
Q 038503 97 ILLIVIILIVA 107 (107)
Q Consensus 97 i~~i~~~~~~~ 107 (107)
-++++.++.-|
T Consensus 27 T~Gll~L~~~W 37 (119)
T PF12409_consen 27 TLGLLYLVFRW 37 (119)
T ss_pred HHHHHHHHHhh
Confidence 33444444444
No 329
>PRK14749 hypothetical protein; Provisional
Probab=20.78 E-value=1.3e+02 Score=14.82 Aligned_cols=9 Identities=44% Similarity=0.597 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 038503 88 CLLLVIFGI 96 (107)
Q Consensus 88 ~~~~~i~~i 96 (107)
||+.-++++
T Consensus 2 WYfaWiLG~ 10 (30)
T PRK14749 2 WYLLWFVGI 10 (30)
T ss_pred hHHHHHHHH
Confidence 444444433
No 330
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.73 E-value=1.2e+02 Score=24.54 Aligned_cols=12 Identities=17% Similarity=0.321 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhC
Q 038503 96 IILLIVIILIVA 107 (107)
Q Consensus 96 ii~~i~~~~~~~ 107 (107)
++++++.+++||
T Consensus 534 ~~~l~~G~~~~~ 545 (552)
T TIGR03521 534 LLLLLFGLSFTY 545 (552)
T ss_pred HHHHHHHHHHHH
Confidence 344445555554
No 331
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.57 E-value=3.7e+02 Score=20.09 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 038503 32 SEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQ 68 (107)
Q Consensus 32 ~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~ 68 (107)
.+|.++...++.++.+.|+.-+.-.++.+.....++.
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~ 132 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKS 132 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999988888877766543
No 332
>COG4218 MtrF Tetrahydromethanopterin S-methyltransferase, subunit F [Coenzyme metabolism]
Probab=20.42 E-value=2.1e+02 Score=17.04 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038503 50 VMIDDISSNIESSHASTA 67 (107)
Q Consensus 50 e~id~Ie~nv~~a~~~v~ 67 (107)
..+|+|+..|++.....+
T Consensus 17 pn~~~id~yVediryr~q 34 (73)
T COG4218 17 PNTDRIDTYVEDIRYRSQ 34 (73)
T ss_pred CChhHHHHHHHHHHHHHH
Confidence 346677777766655443
No 333
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.41 E-value=2.3e+02 Score=17.64 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 16 IIEEREQGIKEIQEQISEVNE------IFKDLAVLVHEQ--GVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 16 ~i~er~~~i~~le~~i~~l~~------l~~~l~~~V~~Q--ge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
-+..-..++...+..+.++.. +|.-+|.++..+ .+.+.+++++++.....++.-.+++....
T Consensus 25 q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~ 94 (110)
T TIGR02338 25 QKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLR 94 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555544 577777776654 34555566655555555554444444333
No 334
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=20.41 E-value=1.5e+02 Score=18.60 Aligned_cols=7 Identities=0% Similarity=0.149 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 038503 87 SCLLLVI 93 (107)
Q Consensus 87 ~~~~~~i 93 (107)
.|+++++
T Consensus 21 ~w~FWlv 27 (102)
T PF11669_consen 21 LWYFWLV 27 (102)
T ss_pred HHHHHHH
Confidence 3444444
No 335
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.40 E-value=3.4e+02 Score=19.51 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038503 55 ISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
....++.|+..++++..+|.++.
T Consensus 111 ak~~l~~aE~~~e~~~~~L~~~I 133 (207)
T PF05546_consen 111 AKEALEEAEEKVEEAFDDLMRAI 133 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 336
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=20.23 E-value=3.3e+02 Score=19.29 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 38 FKDLAVLVHEQ---GVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 38 ~~~l~~~V~~Q---ge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.-+-.++..| |.-+|..+...+..+..+.+|...++.-.+.+.
T Consensus 121 ~~~v~~ml~~~~~~~~k~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~ 167 (192)
T COG5374 121 MSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQE 167 (192)
T ss_pred HHHHHHHHHHhhhcccchhhhhcchHHHHHHHhhhhHHHHHHHHHHH
Confidence 44445567777 567899999999999999988888877666543
No 337
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=20.22 E-value=3e+02 Score=18.87 Aligned_cols=56 Identities=5% Similarity=0.229 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 038503 19 EREQGIKEIQEQISEVNEIFKD-------LAVLVHEQGVM-IDDISSNIESSHASTAQATTQLA 74 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~-------l~~~V~~Qge~-id~Ie~nv~~a~~~v~~~~~eL~ 74 (107)
+-.+++..|++.+.+|..++.- +.....++.+. ++.++.+|..-..-++.+.+.++
T Consensus 76 ~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~ 139 (157)
T COG3352 76 DIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLR 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3344555555555555555444 44445555555 77777777776666655555443
No 338
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.21 E-value=3.9e+02 Score=20.20 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
...+..+.+...-..++...+..=....+............+..+...|.+|.+.-
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 33333333333333333333333333444444445555666677777777776654
No 339
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.06 E-value=2e+02 Score=16.78 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLV 45 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V 45 (107)
-+++++..--.++|..+..-.
T Consensus 7 l~L~R~~~~~~~~Y~~Ll~r~ 27 (82)
T PF13807_consen 7 LRLQRDVEIKRELYETLLQRY 27 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 377777777777777765433
No 340
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=20.06 E-value=42 Score=26.65 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIES 61 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~ 61 (107)
+.+-+.+.-++.+|..++.-|..|+ +|+|++..+.
T Consensus 366 D~VyKiLnKlK~v~st~~~~V~hQS--LDdi~~~~ee 400 (445)
T PF13608_consen 366 DCVYKILNKLKGVFSTMGQDVRHQS--LDDIEDIFEE 400 (445)
T ss_pred HHHHHHHHHHHHHHhccCCCccCCC--ccchhhhhhh
Confidence 5566778889999999999999997 9999887654
Done!