Query 038503
Match_columns 107
No_of_seqs 154 out of 1037
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 20:22:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_B Syntaxin-1A; membrane p 100.0 5.8E-30 2E-34 164.2 14.6 96 10-105 9-104 (109)
2 1jth_B Syntaxin 1A; coiled-coi 99.9 4.5E-26 1.6E-30 137.9 10.3 75 15-89 3-77 (77)
3 2nps_B Syntaxin 13, vesicle-as 99.9 2.3E-24 8E-29 128.5 10.0 70 18-87 2-71 (71)
4 1sfc_B Protein (syntaxin 1A), 99.9 1.1E-22 3.6E-27 124.7 10.6 75 10-84 9-83 (83)
5 3b5n_B Protein SSO1; snare com 99.9 2.7E-22 9.3E-27 118.9 11.1 67 15-81 3-69 (69)
6 1gl2_B Syntaxin 7; membrane pr 99.8 5.2E-21 1.8E-25 112.2 8.3 64 15-78 2-65 (65)
7 1n7s_B Syntaxin 1A; neuronal s 99.8 1.1E-20 3.8E-25 111.6 9.6 64 14-77 4-67 (68)
8 1dn1_B Syntaxin 1A, syntaxin b 99.8 2.3E-21 7.8E-26 140.6 -0.5 80 10-89 188-267 (267)
9 2xhe_B Syntaxin1; exocytosis, 99.7 1.2E-18 4E-23 126.8 -2.5 72 13-84 208-279 (279)
10 3c98_B Syntaxin-1A; protein co 99.4 2.3E-14 7.8E-19 102.0 -1.3 80 10-89 200-279 (279)
11 2nps_D Syntaxin-6; vesicle fus 99.2 2E-10 6.9E-15 69.6 8.0 74 10-83 7-80 (82)
12 1gl2_D Syntaxin 8, vesicle tra 99.0 1.4E-09 4.9E-14 63.0 7.5 62 15-76 2-63 (65)
13 1n7s_D SNAP-25A; neuronal snar 98.9 2.4E-08 8.2E-13 58.0 9.7 60 16-75 4-63 (66)
14 1sfc_D Protein (SNAP-25B), pro 98.9 4.2E-08 1.4E-12 60.0 10.2 63 14-76 21-83 (87)
15 3b5n_D Protein transport prote 98.7 1.7E-07 5.9E-12 54.2 9.2 58 18-75 6-63 (64)
16 1l4a_D S-SNAP25 fusion protein 98.7 1E-07 3.6E-12 58.2 8.1 62 15-76 23-84 (87)
17 1fio_A SSO1 protein; four heli 98.5 6E-08 2.1E-12 66.5 2.4 39 11-49 158-196 (196)
18 3hd7_A Vesicle-associated memb 98.0 0.00045 1.5E-08 42.2 12.4 43 22-64 5-47 (91)
19 3hd7_B Syntaxin-1A; membrane p 98.0 0.00089 3E-08 42.1 14.1 90 9-102 15-105 (109)
20 1n7s_C SNAP-25A; neuronal snar 97.5 0.0039 1.3E-07 37.0 11.1 55 21-75 22-76 (79)
21 1nhl_A Synaptosomal-associated 97.5 0.0015 5.3E-08 36.0 8.3 48 27-74 5-52 (54)
22 3b5n_C Protein transport prote 97.1 0.011 3.6E-07 34.4 9.6 54 26-79 16-69 (70)
23 1l4a_C S-SNAP25 fusion protein 97.0 0.0069 2.4E-07 36.3 7.9 50 24-73 29-78 (83)
24 2kog_A Vesicle-associated memb 96.2 0.00061 2.1E-08 43.6 -0.5 40 22-61 33-72 (119)
25 1gl2_C VTI1B, vesicle transpor 95.6 0.14 4.9E-06 28.9 8.8 54 22-75 9-62 (65)
26 3hd7_A Vesicle-associated memb 94.2 0.48 1.6E-05 28.5 12.7 27 55-81 35-61 (91)
27 2nps_C Vesicle transport throu 91.3 1.3 4.6E-05 25.9 11.4 65 15-79 12-76 (81)
28 3na7_A HP0958; flagellar bioge 90.1 3.6 0.00012 28.8 10.6 74 2-75 12-85 (256)
29 1n7s_B Syntaxin 1A; neuronal s 87.1 2.7 9.1E-05 23.6 9.6 61 23-83 6-66 (68)
30 1gl2_B Syntaxin 7; membrane pr 86.7 2.7 9.4E-05 23.3 8.7 54 28-81 8-61 (65)
31 1jth_B Syntaxin 1A; coiled-coi 86.5 3.1 0.00011 23.8 9.9 64 14-77 9-72 (77)
32 2kog_A Vesicle-associated memb 85.6 1.3 4.4E-05 27.9 4.3 6 76-81 84-89 (119)
33 2nps_B Syntaxin 13, vesicle-as 85.5 3.4 0.00012 23.3 8.7 62 15-76 6-67 (71)
34 3b5n_B Protein SSO1; snare com 85.4 3.4 0.00012 23.2 9.7 60 24-83 5-64 (69)
35 3efg_A Protein SLYX homolog; x 84.6 4.2 0.00015 23.6 6.3 48 22-69 14-61 (78)
36 3n27_A Fusion glycoprotein F0, 80.5 6.7 0.00023 23.0 6.4 26 54-79 50-75 (80)
37 1sfc_A VAMP 2, protein (synapt 77.4 9.3 0.00032 22.9 9.6 42 22-63 30-71 (96)
38 1sfc_B Protein (syntaxin 1A), 74.7 10 0.00034 22.0 9.7 63 21-83 13-75 (83)
39 2ww9_B Protein transport prote 72.4 2.2 7.4E-05 25.2 2.0 31 50-80 13-43 (80)
40 3p8c_F ABL interactor 2; actin 67.1 24 0.00083 23.3 9.7 50 17-66 49-98 (159)
41 2l8s_A Integrin alpha-1; trans 67.0 6 0.0002 21.5 2.9 17 91-107 15-31 (54)
42 1jcd_A Major outer membrane li 66.8 13 0.00044 20.0 6.9 27 52-78 20-46 (52)
43 2knc_B Integrin beta-3; transm 66.3 5.5 0.00019 23.2 2.9 18 90-107 15-32 (79)
44 2knc_A Integrin alpha-IIB; tra 66.1 6.3 0.00022 21.4 2.9 15 93-107 20-34 (54)
45 1qu7_A Methyl-accepting chemot 66.1 29 0.00098 23.7 9.1 58 14-71 139-196 (227)
46 1ic2_A Tropomyosin alpha chain 63.1 19 0.00065 20.7 8.9 57 23-79 21-77 (81)
47 2beq_A E2 glycoprotein; viral 63.0 13 0.00044 18.7 4.3 33 25-57 2-34 (38)
48 1n7s_A Vesicle-associated memb 61.1 18 0.00061 19.7 9.9 43 22-64 4-46 (63)
49 3zx6_A HAMP, methyl-accepting 59.4 46 0.0016 23.9 11.7 60 14-73 219-278 (341)
50 2k1a_A Integrin alpha-IIB; sin 59.2 11 0.00037 19.3 2.9 15 93-107 18-32 (42)
51 1l4a_A Synaptobrevin; snare, s 58.3 24 0.00082 20.2 5.9 40 22-61 15-54 (80)
52 3fym_A Putative uncharacterize 56.6 2.3 7.9E-05 26.6 0.0 6 24-29 33-38 (130)
53 3b5n_A Synaptobrevin homolog 1 56.0 22 0.00077 19.2 9.7 39 23-61 3-41 (61)
54 1urq_A M-tomosyn isoform; tran 55.5 24 0.00083 19.5 8.5 40 23-62 5-44 (63)
55 2k9j_B Integrin beta-3; transm 52.1 16 0.00056 18.6 2.9 17 91-107 15-31 (43)
56 1rh5_B Preprotein translocase 50.5 4.7 0.00016 23.3 0.7 25 54-78 4-28 (74)
57 3nmd_A CGMP dependent protein 50.0 34 0.0012 19.5 7.2 30 15-44 33-62 (72)
58 2nps_A VAMP-4, vesicle-associa 49.0 34 0.0012 19.2 7.7 40 23-62 9-48 (74)
59 1gl2_A Endobrevin; membrane pr 46.4 35 0.0012 18.6 7.9 41 22-62 9-49 (65)
60 1deq_A Fibrinogen (alpha chain 44.5 99 0.0034 23.3 9.8 18 33-50 106-123 (390)
61 4aj5_A SKA1, spindle and kinet 44.4 49 0.0017 19.7 5.6 34 24-57 39-72 (91)
62 3vmt_A Monofunctional glycosyl 44.2 13 0.00044 26.5 2.3 21 78-98 29-49 (263)
63 3din_D Preprotein translocase 43.9 40 0.0014 18.5 4.1 36 62-97 4-39 (65)
64 4etp_A Kinesin-like protein KA 42.0 1E+02 0.0036 22.9 7.1 37 4-40 6-42 (403)
65 1pp9_D Cytochrome C-1, cytochr 41.0 57 0.0019 22.9 5.2 42 62-103 179-220 (241)
66 3cx5_D Cytochrome C1, heme pro 40.2 59 0.002 22.9 5.2 43 62-104 183-225 (248)
67 2qjy_B Cytochrome C1; cytochro 39.5 47 0.0016 23.7 4.6 42 62-103 204-245 (269)
68 1zrt_D Cytochrome C1; cytochro 39.3 47 0.0016 23.5 4.6 42 62-103 202-243 (258)
69 2yiu_B Cytochrome C1, heme pro 39.2 62 0.0021 23.0 5.2 42 62-103 205-246 (263)
70 3oja_A Leucine-rich immune mol 38.0 1.2E+02 0.0042 22.5 11.4 56 24-79 423-478 (487)
71 4dzo_A Mitotic spindle assembl 37.1 75 0.0026 19.8 5.7 31 16-46 5-35 (123)
72 2akf_A Coronin-1A; coiled coil 37.1 36 0.0012 16.0 3.5 14 47-60 17-30 (32)
73 2lhr_A Iron-regulated surface 36.3 34 0.0012 19.5 2.8 40 8-47 6-45 (78)
74 1pi7_A VPU protein, U ORF prot 36.0 40 0.0014 16.6 2.7 9 95-103 11-19 (36)
75 2nps_D Syntaxin-6; vesicle fus 36.0 61 0.0021 18.4 6.9 67 14-80 4-70 (82)
76 1wcr_A PTS system, N, N'-diace 35.6 34 0.0012 20.8 2.9 26 56-81 31-56 (103)
77 3k1s_A PTS system, cellobiose- 35.1 35 0.0012 21.0 2.9 26 56-81 35-60 (109)
78 2e2a_A Protein (enzyme IIA); h 34.9 35 0.0012 20.8 2.9 26 56-81 33-58 (105)
79 1ezj_A Nucleocapsid phosphopro 34.2 80 0.0027 19.2 6.5 40 14-53 65-104 (115)
80 3dl8_C SECE; RECA-type ATPase 34.1 44 0.0015 18.3 3.0 18 62-79 4-21 (65)
81 3u1c_A Tropomyosin alpha-1 cha 32.5 81 0.0028 18.8 9.6 56 25-80 26-81 (101)
82 3oja_A Leucine-rich immune mol 32.4 1.5E+02 0.0052 21.9 11.0 40 27-66 433-472 (487)
83 2wwb_B SEC61gamma, protein tra 32.3 3.2 0.00011 23.7 -2.0 22 58-79 7-28 (68)
84 3l8r_A PTCA, putative PTS syst 32.0 41 0.0014 21.1 2.9 26 56-81 50-75 (120)
85 3u59_A Tropomyosin beta chain; 31.9 82 0.0028 18.6 9.6 55 25-79 26-80 (101)
86 2jp3_A FXYD domain-containing 30.3 57 0.0019 18.4 3.0 10 93-102 23-32 (67)
87 1c94_A Retro-GCN4 leucine zipp 30.2 52 0.0018 15.8 2.5 24 3-26 11-34 (38)
88 1pl5_A Regulatory protein SIR4 29.1 1E+02 0.0036 19.0 10.5 67 9-75 54-120 (142)
89 2zxe_G FXYD10, phospholemman-l 29.1 60 0.002 18.6 3.0 15 91-105 23-37 (74)
90 2jo1_A Phospholemman; FXYD1, N 29.1 61 0.0021 18.4 3.0 9 93-101 22-30 (72)
91 3zrx_A AF1503 protein, osmolar 28.7 78 0.0027 17.4 6.2 33 35-67 47-79 (115)
92 2b9c_A Striated-muscle alpha t 27.3 1.3E+02 0.0043 19.3 7.5 48 24-71 54-101 (147)
93 3ajw_A Flagellar FLIJ protein; 27.0 1.1E+02 0.0038 18.7 8.5 46 35-80 73-118 (150)
94 2ch7_A Methyl-accepting chemot 26.8 1.5E+02 0.0053 20.2 10.9 41 22-62 219-259 (309)
95 3kqg_A Langerin, C-type lectin 26.4 1.2E+02 0.0042 19.0 5.0 33 18-50 12-44 (182)
96 1nyh_A Regulatory protein SIR4 26.3 1.3E+02 0.0044 19.1 10.3 67 9-75 78-144 (166)
97 4gwp_A Mediator of RNA polymer 25.8 1.2E+02 0.0042 18.8 7.3 65 15-79 4-72 (115)
98 3htk_A Structural maintenance 25.5 81 0.0028 16.5 9.0 47 23-69 6-52 (60)
99 2zi0_A Protein 2B, TAV2B; RNAI 25.4 60 0.0021 18.4 2.5 30 55-84 4-33 (75)
100 2qts_A Acid-sensing ION channe 25.0 48 0.0016 24.4 2.8 26 82-107 16-41 (438)
101 3mp7_B Preprotein translocase 24.9 28 0.00097 19.1 1.1 18 62-79 8-25 (61)
102 3na7_A HP0958; flagellar bioge 23.9 1.8E+02 0.0061 19.9 12.3 49 25-73 107-155 (256)
103 1svf_B Protein (fusion glycopr 23.8 76 0.0026 15.6 3.9 19 54-72 16-34 (38)
104 2ieq_A S glycoprotein, spike g 23.4 1.4E+02 0.0046 18.4 5.8 37 19-55 12-48 (109)
105 3ayf_A Nitric oxide reductase; 22.9 61 0.0021 26.7 3.1 25 81-105 16-40 (800)
106 3b5n_D Protein transport prote 21.9 1.1E+02 0.0037 16.7 9.3 55 25-79 6-60 (64)
107 3bo0_B Preprotein translocase 21.4 1.1E+02 0.0037 16.4 5.0 20 62-81 6-25 (65)
108 2dfs_A Myosin-5A; myosin-V, in 21.4 3.8E+02 0.013 22.7 12.1 31 24-54 986-1016(1080)
109 3n27_A Fusion glycoprotein F0, 21.2 1.3E+02 0.0045 17.4 7.4 67 20-86 4-75 (80)
110 1vcs_A Vesicle transport throu 20.7 1.4E+02 0.0049 17.6 7.2 31 18-48 34-64 (102)
111 3zx6_A HAMP, methyl-accepting 20.7 2.3E+02 0.008 20.1 11.4 46 21-66 58-103 (341)
112 3ghg_A Fibrinogen alpha chain; 20.6 3.2E+02 0.011 21.6 8.8 23 24-46 73-95 (562)
113 2w3z_A Putative deacetylase; P 20.6 21 0.00072 25.6 0.0 16 79-94 15-30 (311)
114 2fyz_B Fusion protein, fusion 20.5 1.1E+02 0.0036 16.0 4.4 28 55-82 12-39 (48)
No 1
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.97 E-value=5.8e-30 Score=164.23 Aligned_cols=96 Identities=28% Similarity=0.393 Sum_probs=88.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503 10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL 89 (107)
Q Consensus 10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~ 89 (107)
.......+++|++++++|++++.+|+++|.||+.+|++||+++|+||+|+++|.+|+++|+.+|++|.+|+|++|||+||
T Consensus 9 a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i 88 (109)
T 3hd7_B 9 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 88 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccee
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 038503 90 LLVIFGIILLIVIILI 105 (107)
Q Consensus 90 ~~~i~~ii~~i~~~~~ 105 (107)
+++|++++++++.+++
T Consensus 89 ~l~~~~i~~~i~~~~~ 104 (109)
T 3hd7_B 89 IIICCVILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 9888887777766655
No 2
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.94 E-value=4.5e-26 Score=137.89 Aligned_cols=75 Identities=32% Similarity=0.465 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL 89 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~ 89 (107)
+.+++|++++.+|+++|.+|++||.||+.+|.+||+++|+||+|++.|..|+++|+.+|.+|.+|++++||++||
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999886
No 3
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.92 E-value=2.3e-24 Score=128.52 Aligned_cols=70 Identities=41% Similarity=0.636 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLS 87 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~ 87 (107)
++|++++.+|+++|.+|++||.||+.+|.+||++||+||+|++.|..|+++|+.+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999999874
No 4
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.89 E-value=1.1e-22 Score=124.66 Aligned_cols=75 Identities=32% Similarity=0.434 Sum_probs=69.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503 10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS 84 (107)
Q Consensus 10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r 84 (107)
.......+++|++++.+|+++|.+|++||.||+.+|.+||++||+||+|++.|..|+++|+.+|.+|.+|++++|
T Consensus 9 ~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 9 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 344677899999999999999999999999999999999999999999999999999999999999999999875
No 5
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.89 E-value=2.7e-22 Score=118.92 Aligned_cols=67 Identities=27% Similarity=0.426 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
..+++|++++.+|+++|.+|++||.||+.+|.+||+++|+||+|++.|..|+++|+.+|.+|.+|+|
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999985
No 6
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.85 E-value=5.2e-21 Score=112.17 Aligned_cols=64 Identities=42% Similarity=0.736 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
.++++|++++.+|+++|.+|++||.||+.+|++||+++|+||+|++.|..|+++|+.+|.+|.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999999999999999999999999999999999999999999864
No 7
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.85 E-value=1.1e-20 Score=111.63 Aligned_cols=64 Identities=34% Similarity=0.500 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
...+++|++++.+|+++|.+|++||.+|+.+|.+||+++|+||+|++.|..|+++|+.+|.+|.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999999999999999999985
No 8
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.80 E-value=2.3e-21 Score=140.62 Aligned_cols=80 Identities=30% Similarity=0.405 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503 10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL 89 (107)
Q Consensus 10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~ 89 (107)
.......+++|++++.+|+++|.+|++||.||+.+|++||++||+||+|++.|..|++.|+.+|.+|.+|++++|||+||
T Consensus 188 ~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 188 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999886
No 9
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.67 E-value=1.2e-18 Score=126.77 Aligned_cols=72 Identities=33% Similarity=0.526 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503 13 NEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSS 84 (107)
Q Consensus 13 ~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r 84 (107)
....+++|+++|.+|+++|.+|++||.+|+.||++||++||+||+||+.|..|+++|+.+|.+|.+|+|++|
T Consensus 208 ~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 208 KLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp --CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 345799999999999999999999999999999999999999999999999999999999999999999876
No 10
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.38 E-value=2.3e-14 Score=101.97 Aligned_cols=80 Identities=30% Similarity=0.405 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHH
Q 038503 10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSCL 89 (107)
Q Consensus 10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~~ 89 (107)
.......++++.+.+.+|+.++.+++++|.+++.++.+|++++|+|+.|++.+..++..|+.++.+|.+|++++|||+||
T Consensus 200 ~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 200 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 44456789999999999999999999999999999999999999999999999999999999999999999999999885
No 11
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.15 E-value=2e-10 Score=69.62 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038503 10 ITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSS 83 (107)
Q Consensus 10 ~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~ 83 (107)
++.+..++++.++.++.|..++..++++..+|+.++..|++++|++++.++.+...+..+++.+.+..+..+.+
T Consensus 7 ~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~ 80 (82)
T 2nps_D 7 MTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDR 80 (82)
T ss_dssp -----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence 34567889999999999999999999999999999999999999999999999999999999999988875544
No 12
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.02 E-value=1.4e-09 Score=63.04 Aligned_cols=62 Identities=16% Similarity=0.346 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
+++++.++.++.|+.++..++++..+|+.++..|+.++|++++.++.+...+..+++.+.+.
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999999999999999999999887654
No 13
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=98.91 E-value=2.4e-08 Score=57.96 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 16 IIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 16 ~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
+-++.++.++.|..++..++++..+|+.++..|+.++|++++.++.+...+..+++.+.+
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 346778899999999999999999999999999999999999999999999999988865
No 14
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.87 E-value=4.2e-08 Score=59.95 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
....++.++.++.|...+..++++..+|+.++..|+++||++++.++.+...+..+++.+.+.
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999999999999888764
No 15
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.7e-07 Score=54.16 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
.+.++.+..++..+..++.|...++.++..|.++||+|++.++.+..++..+++.|.+
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677889999999999999999999999999999999999999999999999988864
No 16
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=98.70 E-value=1e-07 Score=58.21 Aligned_cols=62 Identities=21% Similarity=0.300 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
..-.+.++.++.|...+..|++|..+|+.++..|+++||+|++.++.+..++..+++.+.+.
T Consensus 23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999888653
No 17
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=98.46 E-value=6e-08 Score=66.49 Aligned_cols=39 Identities=26% Similarity=0.446 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 11 TFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQG 49 (107)
Q Consensus 11 ~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qg 49 (107)
......+++|+++|.+|+++|.+|++||.||+.+|++||
T Consensus 158 ~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 158 KTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345678999999999999999999999999999999997
No 18
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=98.00 E-value=0.00045 Score=42.19 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHA 64 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~ 64 (107)
+.+.++...+.++++++.+=-.-+-+.||-+|.+++..++-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 5688999999999999998888888999999998877665444
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.97 E-value=0.00089 Score=42.10 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Q 038503 9 EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSSSSLSC 88 (107)
Q Consensus 9 ~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~rk~~~ 88 (107)
+++...+.+++=.+.+.+|..-..++..+..+=+.+++.=...+++..+|++.+...+.+|.+.=++++ +...+++
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r----kk~~i~l 90 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR----RKKIMII 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcceehH
Confidence 344456677778888888888889999999888889988888999999999999999999875533333 3334444
Q ss_pred HH-HHHHHHHHHHHH
Q 038503 89 LL-LVIFGIILLIVI 102 (107)
Q Consensus 89 ~~-~~i~~ii~~i~~ 102 (107)
++ +++++|+.+++.
T Consensus 91 ~~~~i~~~i~~~~~~ 105 (109)
T 3hd7_B 91 ICCVILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 44 344444444443
No 20
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=97.54 E-value=0.0039 Score=37.04 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
-+.+++--+.+.+-.++.......++.||+.|++++.+++.+..++..|.+.|..
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 3446677777778888999999999999999999999999999999999988764
No 21
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=97.49 E-value=0.0015 Score=36.03 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 27 IQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLA 74 (107)
Q Consensus 27 le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~ 74 (107)
..+-+.+..++......+++.||+.+++++.+++....++..|.+.|.
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 344566677778888889999999999999999999999999988774
No 22
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.15 E-value=0.011 Score=34.41 Aligned_cols=54 Identities=9% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 26 EIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 26 ~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+.-+-..+-.+....-..++..||+.|+++|.+++.+..+...|.+.+..-..+
T Consensus 16 r~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 16 NTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333444455556666667889999999999999999999999999988766554
No 23
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.97 E-value=0.0069 Score=36.34 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
.++.-+-+.+..+....-..+++.||+.|++|+.+++....++..|-+.|
T Consensus 29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666777778888999999999999999999999988876554
No 24
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=96.20 E-value=0.00061 Score=43.62 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIES 61 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~ 61 (107)
+.+.++...+.++++++.+=-.-|-+.||-+|.+++..++
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4577888889999888888888888889988888766554
No 25
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=95.56 E-value=0.14 Score=28.95 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
+.+++-.+.+.+--++...+...++.|.|.|.+....+..+..++.++.+-|..
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~ 62 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRS 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHh
Confidence 456677778888899999999999999999999999999999999999877653
No 26
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=94.25 E-value=0.48 Score=28.47 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 55 ISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+|.-++.|.+=...+..--+.|.+.++
T Consensus 35 L~~L~~kt~~L~~~s~~F~~~A~~l~r 61 (91)
T 3hd7_A 35 LSELDDRADALQAGASQFETSAAKLKR 61 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333333333333333
No 27
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=91.34 E-value=1.3 Score=25.92 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+-+..=...++.-...+.+-.++...+-..+..|.|.|.+....+..+..++.++.+-|..-.+.
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 34444455688888889999999999999999999999999999999999999999888776654
No 28
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.07 E-value=3.6 Score=28.79 Aligned_cols=74 Identities=16% Similarity=0.246 Sum_probs=57.6
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 2 EVVLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 2 ~~~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
+|+.+|.+++.-.....+-..++..++..+..++.-+..+...+.+-...+.+.+..++.+...+.+...++..
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666666655555556666778888888888888888888888888888888888888888888888877754
No 29
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=87.10 E-value=2.7 Score=23.57 Aligned_cols=61 Identities=11% Similarity=0.222 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSS 83 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~ 83 (107)
.+..=++.+..+..-..+++.+..+=+.++..=...+++...|+..+.....+|.+.-+++
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666666666666666666554443
No 30
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=86.69 E-value=2.7 Score=23.34 Aligned_cols=54 Identities=19% Similarity=0.319 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 28 QEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 28 e~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
++.+..+..-..+++.+..+=+.++..=...+++...|+..+.....+|.+.-+
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~ 61 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLS 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555554433
No 31
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=86.49 E-value=3.1 Score=23.81 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKAS 77 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~ 77 (107)
.+.+++=.+.+.+|..-..++..|..+=+.+++.=...++....|++.+...+.+|.+.-+++.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~r 72 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555666667777777777777777777776667777777777777777777765444433
No 32
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=85.59 E-value=1.3 Score=27.93 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.2
Q ss_pred HHHHhh
Q 038503 76 ASKIQK 81 (107)
Q Consensus 76 A~~~~~ 81 (107)
|.+.++
T Consensus 84 A~kl~r 89 (119)
T 2kog_A 84 AAKLKR 89 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 33
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=85.50 E-value=3.4 Score=23.30 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKA 76 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A 76 (107)
..+++=.+.+.+|..-..++..|..+=+.+++.=...++....|++.+...+.+|.+.-+++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 67 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566777777778888888888888888778888888888888888888887654443
No 34
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=85.41 E-value=3.4 Score=23.20 Aligned_cols=60 Identities=7% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSS 83 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~ 83 (107)
+..=++.+..+..-..+++.+..+=+.++..=..-+++...|+..+.....+|.+.-+++
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555666666666666666666666666666666666666666666666554443
No 35
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.60 E-value=4.2 Score=23.64 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
..+..||..+.-.-+...+|+..|..|...||++...+..-...+...
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999998888777766543
No 36
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=80.46 E-value=6.7 Score=22.99 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 54 DISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 54 ~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+|.-+...|...++.....+.++++.
T Consensus 50 dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 50 DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 46667888888888888888887764
No 37
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=77.40 E-value=9.3 Score=22.93 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSH 63 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~ 63 (107)
..+.++...+.++..++.+=-.-|-+-|+-||.+++..+.-.
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~ 71 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 568899999999999999988889999999999887655533
No 38
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=74.65 E-value=10 Score=21.97 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQKSS 83 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~ 83 (107)
...+..=++.+..|..-..+++.+..+=+.++..=..-++....|+..+.....+|.+.-+++
T Consensus 13 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 75 (83)
T 1sfc_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666666666666666666666666666554433
No 39
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=72.45 E-value=2.2 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 50 VMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 50 e~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
.|.|.++..++...+.++.+.+=++++.+--
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPd 43 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKKPD 43 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3557777777888888888877776665443
No 40
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=67.12 E-value=24 Score=23.26 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038503 17 IEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHAST 66 (107)
Q Consensus 17 i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v 66 (107)
=+.+.-..+.|......++.+...+-.+++.|.+.++.+|..+......+
T Consensus 49 eeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 49 EETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444557889999999999999999999999999999999998765543
No 41
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=67.03 E-value=6 Score=21.52 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
.++.+++++.++++++|
T Consensus 15 svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 15 SAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555566666665
No 42
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=66.79 E-value=13 Score=19.96 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 52 IDDISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 52 id~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
+|.+...+......+..+..+-.+|.+
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~RAN~ 46 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAARANQ 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555554444443
No 43
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=66.29 E-value=5.5 Score=23.19 Aligned_cols=18 Identities=28% Similarity=0.347 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 038503 90 LLVIFGIILLIVIILIVA 107 (107)
Q Consensus 90 ~~~i~~ii~~i~~~~~~~ 107 (107)
+.++++++++.++++++|
T Consensus 15 ~gvi~gilliGllllliw 32 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555555
No 44
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=66.14 E-value=6.3 Score=21.40 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhC
Q 038503 93 IFGIILLIVIILIVA 107 (107)
Q Consensus 93 i~~ii~~i~~~~~~~ 107 (107)
+.+++++.++++++|
T Consensus 20 l~GLllL~li~~~Lw 34 (54)
T 2knc_A 20 LGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 335555556666665
No 45
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=66.13 E-value=29 Score=23.74 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATT 71 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~ 71 (107)
...+.+=.+.+..+...+.++.+.+.+++....+|...++.|..+++....-++....
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~ 196 (227)
T 1qu7_A 139 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAA 196 (227)
T ss_dssp HHHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556788888889999999999999999999999988888776555544433
No 46
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.06 E-value=19 Score=20.65 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
.....+..+.+...-.......|..=..-+..+++.++.+...+..++..|..|.+.
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666777777777778888889999999999999999999887653
No 47
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=63.01 E-value=13 Score=18.69 Aligned_cols=33 Identities=15% Similarity=0.333 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISS 57 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~ 57 (107)
..+.+.+...+.-+..+...|..||..+..+-.
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~Lt~ 34 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTLVK 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356778888889999999999999998887643
No 48
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=61.08 E-value=18 Score=19.68 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHA 64 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~ 64 (107)
..+.++...+.++..++.+=-.-|-+.|+-||.+++..+.-..
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~ 46 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4678899999999999998888899999999988876554433
No 49
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=59.45 E-value=46 Score=23.90 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
...+.+=.+.+..+...+.++.+.+.+++.-..+|...++.|..+++....-++......
T Consensus 219 ~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~ 278 (341)
T 3zx6_A 219 STLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALV 278 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566678888888889999999999999999888888887776665555444333
No 50
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=59.18 E-value=11 Score=19.34 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhC
Q 038503 93 IFGIILLIVIILIVA 107 (107)
Q Consensus 93 i~~ii~~i~~~~~~~ 107 (107)
+.+++++.++++++|
T Consensus 18 l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 18 LGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555555555
No 51
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=58.32 E-value=24 Score=20.23 Aligned_cols=40 Identities=20% Similarity=0.320 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIES 61 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~ 61 (107)
..+.++...+.++..++.+=-.-|-+-|+-||.+++..+.
T Consensus 15 d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 15 KRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3578899999999999998888889999999998876654
No 52
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=56.64 E-value=2.3 Score=26.61 Aligned_cols=6 Identities=17% Similarity=0.451 Sum_probs=2.5
Q ss_pred HHHHHH
Q 038503 24 IKEIQE 29 (107)
Q Consensus 24 i~~le~ 29 (107)
+.++|+
T Consensus 33 is~iE~ 38 (130)
T 3fym_A 33 LVHIEN 38 (130)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 344444
No 53
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=56.03 E-value=22 Score=19.20 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIES 61 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~ 61 (107)
.+.++...+.++..++.+=-.-|-+.|+-||.+.+..+.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 577889999999999988888888999999988766554
No 54
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=55.51 E-value=24 Score=19.45 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESS 62 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a 62 (107)
.+..+...+.++..++.+=-.-|.+-|+-|+.+++..++-
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L 44 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAM 44 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999988776653
No 55
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=52.08 E-value=16 Score=18.62 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhC
Q 038503 91 LVIFGIILLIVIILIVA 107 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~~~ 107 (107)
.++.+++++-++++++|
T Consensus 15 gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555555
No 56
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=50.54 E-value=4.7 Score=23.31 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 54 DISSNIESSHASTAQATTQLAKASK 78 (107)
Q Consensus 54 ~Ie~nv~~a~~~v~~~~~eL~~A~~ 78 (107)
.++..++...+.++.+.+=++.|.+
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~K 28 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKK 28 (74)
T ss_dssp --------CCHHHHHHHHHHHSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444555566666666655555543
No 57
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.98 E-value=34 Score=19.54 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQISEVNEIFKDLAVL 44 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i~~l~~l~~~l~~~ 44 (107)
+.++.++..|+.+++.+.+.......|...
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544444444444433
No 58
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=49.05 E-value=34 Score=19.21 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESS 62 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a 62 (107)
.+.++...+.++..++.+=-.-|-+-|+-||.+.+..+.-
T Consensus 9 ~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L 48 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3667888889999888887778888999999887665543
No 59
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=46.42 E-value=35 Score=18.65 Aligned_cols=41 Identities=15% Similarity=0.327 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESS 62 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a 62 (107)
..+.++...+.++..++.+==.-|-+.|+-||.+.+..+.-
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L 49 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDL 49 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45788999999999999887788889999999887665543
No 60
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.47 E-value=99 Score=23.26 Aligned_cols=18 Identities=11% Similarity=0.124 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 038503 33 EVNEIFKDLAVLVHEQGV 50 (107)
Q Consensus 33 ~l~~l~~~l~~~V~~Qge 50 (107)
+....|.+++..++.+-.
T Consensus 106 dndn~~~e~s~eLe~~i~ 123 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIE 123 (390)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 61
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=44.41 E-value=49 Score=19.74 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISS 57 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~ 57 (107)
+.+|...+.-++++.+.+-..|..|.+....+-+
T Consensus 39 L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~~~sLKE 72 (91)
T 4aj5_A 39 LNKIGDEIIVINELLNKLELEIQYQEQTNNSLKE 72 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777766666555443
No 62
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=44.18 E-value=13 Score=26.54 Aligned_cols=21 Identities=43% Similarity=0.387 Sum_probs=6.6
Q ss_pred HHhhcchhhHHHHHHHHHHHH
Q 038503 78 KIQKSSSSLSCLLLVIFGIIL 98 (107)
Q Consensus 78 ~~~~~~rk~~~~~~~i~~ii~ 98 (107)
|.++..|-..+++++++++++
T Consensus 29 kk~~~~~~~~~~~~~~l~~~~ 49 (263)
T 3vmt_A 29 KKKKSKRILLKILLTILIIIA 49 (263)
T ss_dssp ------CCTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 333334434444444444433
No 63
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=43.86 E-value=40 Score=18.51 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGII 97 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii 97 (107)
...+.+....|++|..=-.|+--......++++.++
T Consensus 4 ~~~f~~~v~~ElkKV~WPtr~e~~~~T~vViv~~~i 39 (65)
T 3din_D 4 LRKFFREVIAEAKKISWPSRKELLTSFGVVLVILAV 39 (65)
T ss_dssp ------CHHHHHHHHHHHHCCCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCcCHHHHHhHHHHHHHHHHH
Confidence 445667778888777655444333333344444333
No 64
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.99 E-value=1e+02 Score=22.87 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=21.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 4 VLLDNEITFNEAIIEEREQGIKEIQEQISEVNEIFKD 40 (107)
Q Consensus 4 ~~~~~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~ 40 (107)
..++.++..-.+-.++..+.+++++..+.++.+.+..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555566666666666666666555444
No 65
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=41.02 E-value=57 Score=22.87 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVII 103 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~ 103 (107)
+...+..-..-|..+.+-.+..||.+=+.++++++++.+++.
T Consensus 179 ~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y 220 (241)
T 1pp9_D 179 MSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVY 220 (241)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777776776655555555555555443
No 66
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=40.17 E-value=59 Score=22.88 Aligned_cols=43 Identities=19% Similarity=0.091 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVIIL 104 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~~ 104 (107)
+...+..-..-|..+.+-.+..||.+=+.++++++++++++.+
T Consensus 183 ~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~ 225 (248)
T 3cx5_D 183 TSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIW 225 (248)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556677777776767766555555555555555443
No 67
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=39.49 E-value=47 Score=23.74 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVII 103 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~ 103 (107)
+...+..-..-|..|.+-.+..||.+=+.++++++++.+++.
T Consensus 204 ~~q~a~DVvaFL~waaEP~~~~Rk~lG~~Vl~fL~il~~l~y 245 (269)
T 2qjy_B 204 VHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLY 245 (269)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777777777655555555555555544
No 68
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=39.26 E-value=47 Score=23.53 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVII 103 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~ 103 (107)
....+..-..-|..|.+-.+..||.+=+.++++++++.+++.
T Consensus 202 ~~q~a~DVv~FL~waaEP~~~~Rk~~G~~vl~fL~il~~l~y 243 (258)
T 1zrt_D 202 VDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVMLY 243 (258)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556667777777777777655555555555555544
No 69
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=39.18 E-value=62 Score=23.01 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKIQKSSSSLSCLLLVIFGIILLIVII 103 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~~~rk~~~~~~~i~~ii~~i~~~ 103 (107)
+...+..-..-|..+.+-....||.+=+.++++++++.+++.
T Consensus 205 ~~q~a~DVvaFL~waaEP~~~~Rk~lG~~vl~fL~il~~l~y 246 (263)
T 2yiu_B 205 VDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLY 246 (263)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777776666676655555555555555443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.97 E-value=1.2e+02 Score=22.46 Aligned_cols=56 Identities=9% Similarity=-0.093 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
..+.+.......+.+..++..+....+.-++.+.-++.....+..++..++.|...
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 34444444444455555555555555555555555555555566666555555443
No 71
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=37.14 E-value=75 Score=19.77 Aligned_cols=31 Identities=10% Similarity=0.181 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 16 IIEEREQGIKEIQEQISEVNEIFKDLAVLVH 46 (107)
Q Consensus 16 ~i~er~~~i~~le~~i~~l~~l~~~l~~~V~ 46 (107)
.+.+-..++...++....|+++|..-+....
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eFR 35 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEFR 35 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778899999999999999998776654
No 72
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=37.08 E-value=36 Score=16.03 Aligned_cols=14 Identities=7% Similarity=0.257 Sum_probs=7.5
Q ss_pred HhhHHHHHHHHHHH
Q 038503 47 EQGVMIDDISSNIE 60 (107)
Q Consensus 47 ~Qge~id~Ie~nv~ 60 (107)
+=.+-+|++|+.+.
T Consensus 17 ~lq~r~drle~tvq 30 (32)
T 2akf_A 17 KLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33445666666553
No 73
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=36.31 E-value=34 Score=19.46 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=33.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 8 NEITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHE 47 (107)
Q Consensus 8 ~~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~ 47 (107)
++.+|..+-+-+-....+.|++.+.+|+.+...+..-...
T Consensus 6 ~ee~y~~ekLLapY~KAKTLERqvYEL~kiqdkLPeklka 45 (78)
T 2lhr_A 6 DEETYNLQKLLAPYHKAKTLERQVYELEKLQEKLPEKYKA 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHhhHHHHhhhHHHhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 3567788888888889999999999999998888777654
No 74
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=36.05 E-value=40 Score=16.58 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 038503 95 GIILLIVII 103 (107)
Q Consensus 95 ~ii~~i~~~ 103 (107)
+++.+++.+
T Consensus 11 livalIiaI 19 (36)
T 1pi7_A 11 LVVAIIIAI 19 (36)
T ss_pred HHHHHHHHH
Confidence 333333333
No 75
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=35.97 E-value=61 Score=18.42 Aligned_cols=67 Identities=13% Similarity=0.075 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
...++.+..-+++-...+..|......+..+-..=|+=|+.=..-++...+.+.++...|..+.+.-
T Consensus 4 ~a~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~ 70 (82)
T 2nps_D 4 MASMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKL 70 (82)
T ss_dssp --------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555666666666666666555555566655566666677777777776666553
No 76
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=35.56 E-value=34 Score=20.76 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.+.+.|...++.|...+.+|.+.|.
T Consensus 31 ~g~fe~A~~~l~eA~~~l~~AH~~Qt 56 (103)
T 1wcr_A 31 QGDFAAAKAMMDQSRMALNEAHLVQT 56 (103)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998874
No 77
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=35.10 E-value=35 Score=20.97 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.+.+.|...++.|...+.+|.+.|.
T Consensus 35 ~gdfe~A~~~l~eA~~~l~~AH~~QT 60 (109)
T 3k1s_A 35 QGKMAEADEAMVKAKEAINEAHHFQT 60 (109)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999998774
No 78
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=34.95 E-value=35 Score=20.78 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.+.+.|...++.|...+.+|.+.|.
T Consensus 33 ~g~fe~A~~~l~eA~~~l~~AH~~Qt 58 (105)
T 2e2a_A 33 NGDFAKADSLVVEAGSCIAEAHSSQT 58 (105)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999998774
No 79
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=34.20 E-value=80 Score=19.23 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 038503 14 EAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMID 53 (107)
Q Consensus 14 ~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id 53 (107)
..-+.|.+..++.|..++..+++++..+..-=.+|...+-
T Consensus 65 ~~kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~~ 104 (115)
T 1ezj_A 65 ARKVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLM 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456667777888888888888888887777666666543
No 80
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=34.12 E-value=44 Score=18.33 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKI 79 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~ 79 (107)
...+.+....|++|..=-
T Consensus 4 ~~~f~~~v~~ElkKV~WP 21 (65)
T 3dl8_C 4 LKEFLKGVRDELKRVVWP 21 (65)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHhcccCc
Confidence 345566677777665543
No 81
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.53 E-value=81 Score=18.77 Aligned_cols=56 Identities=9% Similarity=0.004 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
..++..+....+-.......|..=..-+..+++.++.+...+..+...|..+.+..
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666777777777777777777776665543
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.38 E-value=1.5e+02 Score=21.92 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038503 27 IQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHAST 66 (107)
Q Consensus 27 le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v 66 (107)
..+.+....+-.+.+...-..+...++.++..+..|....
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3333333333333333333333333333333333333333
No 83
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=32.26 E-value=3.2 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038503 58 NIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 58 nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
.++...+.++...+=+++|.+-
T Consensus 7 ~~e~~~~f~k~~~r~lk~~~KP 28 (68)
T 2wwb_B 7 FVEPSRQFVKDSIRLVKRCTKP 28 (68)
T ss_dssp SSTTHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 3455566666776666655543
No 84
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=32.01 E-value=41 Score=21.05 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 038503 56 SSNIESSHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 56 e~nv~~a~~~v~~~~~eL~~A~~~~~ 81 (107)
+.+.+.|...++.|...+.+|.+.|.
T Consensus 50 ~gdfe~A~~~l~eA~e~l~~AH~~QT 75 (120)
T 3l8r_A 50 EKNYILAEQKLQEANDELLKAHQAQT 75 (120)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999998764
No 85
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=31.87 E-value=82 Score=18.63 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
..++..+....+-.......+..=..-+..+++.++.+...+..+...|..+.+.
T Consensus 26 e~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 26 EQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666666666677777777777777777777666554
No 86
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=30.32 E-value=57 Score=18.35 Aligned_cols=10 Identities=50% Similarity=0.600 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 038503 93 IFGIILLIVI 102 (107)
Q Consensus 93 i~~ii~~i~~ 102 (107)
+++.+++++.
T Consensus 23 ifA~vLfi~G 32 (67)
T 2jp3_A 23 IFGGLLCIAG 32 (67)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 87
>1c94_A Retro-GCN4 leucine zipper; retro-coiled coil, 4-alpha-helix-bundle, peptide synthesis, gene regulation; 2.08A {Synthetic} SCOP: k.11.1.1
Probab=30.22 E-value=52 Score=15.85 Aligned_cols=24 Identities=21% Similarity=0.581 Sum_probs=16.6
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHH
Q 038503 3 VVLLDNEITFNEAIIEEREQGIKE 26 (107)
Q Consensus 3 ~~~~~~~~~~~~~~i~er~~~i~~ 26 (107)
+-..++++.|+.+++++-..++++
T Consensus 11 lravenelhynkslleevkdelqk 34 (38)
T 1c94_A 11 LRAVENELHYNKSLLEEVKDELQK 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345677888888888777666543
No 88
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=29.13 E-value=1e+02 Score=19.01 Aligned_cols=67 Identities=16% Similarity=0.358 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 9 EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 9 ~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
.+.+....+......+++-++.+.--+++...++.+|..-.--+..+.....-+..-++.|..++..
T Consensus 54 ~LSFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqise 120 (142)
T 1pl5_A 54 GLSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISE 120 (142)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhh
Confidence 3555566677777788999999999999999999999988888888888888777777777776643
No 89
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=29.09 E-value=60 Score=18.61 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 038503 91 LVIFGIILLIVIILI 105 (107)
Q Consensus 91 ~~i~~ii~~i~~~~~ 105 (107)
-++++.|++++.+++
T Consensus 23 GLifA~vLfi~GI~i 37 (74)
T 2zxe_G 23 GLIVAAVLCVIGIII 37 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 344444444444443
No 90
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=29.07 E-value=61 Score=18.45 Aligned_cols=9 Identities=33% Similarity=0.589 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 038503 93 IFGIILLIV 101 (107)
Q Consensus 93 i~~ii~~i~ 101 (107)
+++.+++++
T Consensus 22 ifA~vLfi~ 30 (72)
T 2jo1_A 22 VIAGILFIL 30 (72)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 91
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=28.69 E-value=78 Score=17.40 Aligned_cols=33 Identities=9% Similarity=0.309 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 038503 35 NEIFKDLAVLVHEQGVMIDDISSNIESSHASTA 67 (107)
Q Consensus 35 ~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~ 67 (107)
+.|...+...+.+..+.+..+...+.+.-..+.
T Consensus 47 n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~ 79 (115)
T 3zrx_A 47 ERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIR 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333334444444444444444444433333333
No 92
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=27.30 E-value=1.3e+02 Score=19.31 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATT 71 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~ 71 (107)
+..++..+.+-..+..+-..-..+=..-+.-++...+.|......+-.
T Consensus 54 ~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~ 101 (147)
T 2b9c_A 54 MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEG 101 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544444433333444444444444444444433
No 93
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=27.05 E-value=1.1e+02 Score=18.67 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 35 NEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKIQ 80 (107)
Q Consensus 35 ~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~~ 80 (107)
+.....+...+..|...+...+..++.+......+..+.+...+..
T Consensus 73 ~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~ 118 (150)
T 3ajw_A 73 QQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQ 118 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666666666666666655544443
No 94
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=26.83 E-value=1.5e+02 Score=20.21 Aligned_cols=41 Identities=20% Similarity=0.498 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 038503 22 QGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESS 62 (107)
Q Consensus 22 ~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a 62 (107)
+.+..+...+.++.+.+.++...+.++...++.|...++..
T Consensus 219 ~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i 259 (309)
T 2ch7_A 219 EKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTEN 259 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667777777777776666666555443
No 95
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=26.41 E-value=1.2e+02 Score=18.95 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQGV 50 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge 50 (107)
+...+.+..|...+..|..-...+...+..|+.
T Consensus 12 ~~~~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~ 44 (182)
T 3kqg_A 12 KSDLEKASALNTKIRALQGSLENMSKLLKRQND 44 (182)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555444444444444433
No 96
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=26.27 E-value=1.3e+02 Score=19.08 Aligned_cols=67 Identities=16% Similarity=0.358 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 9 EITFNEAIIEEREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAK 75 (107)
Q Consensus 9 ~~~~~~~~i~er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~ 75 (107)
.+.+....+......+++-++.+.--+++...++.+|..-.--+..+.....-+..-++.|..++..
T Consensus 78 ~LSFVD~~LSk~~~aldekekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqise 144 (166)
T 1nyh_A 78 GLSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISE 144 (166)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhh
Confidence 3455566666777788999999999999999999999988888888888888777777777766643
No 97
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=25.75 E-value=1.2e+02 Score=18.75 Aligned_cols=65 Identities=18% Similarity=0.269 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 15 AIIEEREQGIKEIQEQI----SEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 15 ~~i~er~~~i~~le~~i----~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
++++||-+.+.+|-..+ ....++|..++.+=......=...+.|+..--..+..+...|++-.+.
T Consensus 4 ~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~ 72 (115)
T 4gwp_A 4 PYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQL 72 (115)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887665554 444555555555443444455667777777777777777777665554
No 98
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.54 E-value=81 Score=16.52 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 038503 23 GIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQA 69 (107)
Q Consensus 23 ~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~ 69 (107)
...++++.+.+.++.+...-........-+++....+..+.+++..=
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555443
No 99
>2zi0_A Protein 2B, TAV2B; RNAI suppression, nucleus, suppressor of RNA silencing; 2.82A {Tomato aspermy virus} PDB: 3cz3_A
Probab=25.37 E-value=60 Score=18.39 Aligned_cols=30 Identities=10% Similarity=0.031 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 038503 55 ISSNIESSHASTAQATTQLAKASKIQKSSS 84 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~A~~~~~~~r 84 (107)
||.-+++....+.+-.+.-+.+.+..+++|
T Consensus 4 ~e~~~~~v~lkLarm~Ekkk~rRk~Hk~NR 33 (75)
T 2zi0_A 4 IEIPLHEIIRKLERMNQKKQAQRKRHKLNR 33 (75)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444444444444444444444444433333
No 100
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=25.05 E-value=48 Score=24.38 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=15.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhC
Q 038503 82 SSSSLSCLLLVIFGIILLIVIILIVA 107 (107)
Q Consensus 82 ~~rk~~~~~~~i~~ii~~i~~~~~~~ 107 (107)
..+|..|.+++++++.+++..+...|
T Consensus 16 ~~eR~~W~~~~l~s~~~~~~~~~~~~ 41 (438)
T 2qts_A 16 SLKRVVWALCFMGSLALLALVCTNRI 41 (438)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777666666655543
No 101
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=24.94 E-value=28 Score=19.13 Aligned_cols=18 Identities=6% Similarity=-0.110 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038503 62 SHASTAQATTQLAKASKI 79 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~ 79 (107)
..+.++...+=+++|.+-
T Consensus 8 ~~~f~kd~~rvlk~~~KP 25 (61)
T 3mp7_B 8 IRHFWKESRRAFLVTKKP 25 (61)
T ss_dssp CTTHHHHHTHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 344455555555555443
No 102
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.90 E-value=1.8e+02 Score=19.92 Aligned_cols=49 Identities=4% Similarity=0.029 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQL 73 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL 73 (107)
..++..+.++.+-...+...+..-...++..+..+............++
T Consensus 107 ~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~ 155 (256)
T 3na7_A 107 NQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNI 155 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333344444444444444444444444444333
No 103
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=23.82 E-value=76 Score=15.60 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038503 54 DISSNIESSHASTAQATTQ 72 (107)
Q Consensus 54 ~Ie~nv~~a~~~v~~~~~e 72 (107)
.+...+..|.+.+++++.-
T Consensus 16 ~~n~sl~~A~~~l~~Sn~~ 34 (38)
T 1svf_B 16 AVNKSLSDALQHLAQSDTY 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 104
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=23.39 E-value=1.4e+02 Score=18.38 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 038503 19 EREQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDI 55 (107)
Q Consensus 19 er~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~I 55 (107)
.=++.+..+..+...++.-+..+...|.+|+..+..+
T Consensus 12 ~~n~Ai~~~~~gf~tv~~Al~kiQdVVN~q~~aLs~l 48 (109)
T 2ieq_A 12 SVNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHL 48 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355677888888888888888888888888877664
No 105
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=22.90 E-value=61 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=16.0
Q ss_pred hcchhhHHHHHHHHHHHHHHHHHHH
Q 038503 81 KSSSSLSCLLLVIFGIILLIVIILI 105 (107)
Q Consensus 81 ~~~rk~~~~~~~i~~ii~~i~~~~~ 105 (107)
++..|+.|+.+++++++.+.+++++
T Consensus 16 ~~~~~~~~~~l~~v~~~~f~vL~~~ 40 (800)
T 3ayf_A 16 KTTNSFLKSILIFTILISSTVLLVG 40 (800)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777666666554
No 106
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=21.90 E-value=1.1e+02 Score=16.69 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038503 25 KEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHASTAQATTQLAKASKI 79 (107)
Q Consensus 25 ~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v~~~~~eL~~A~~~ 79 (107)
+++...+.++..+...+..+-..-|.=||.=...++.....+.+....+..+.+.
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~R 60 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNR 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999888887765
No 107
>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B 3kcr_B
Probab=21.40 E-value=1.1e+02 Score=16.43 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 038503 62 SHASTAQATTQLAKASKIQK 81 (107)
Q Consensus 62 a~~~v~~~~~eL~~A~~~~~ 81 (107)
...+......|+++...-.+
T Consensus 6 ~~~f~~~~~~E~kkV~wptr 25 (65)
T 3bo0_B 6 TVAFAREARTEVRKVIWPTR 25 (65)
T ss_dssp HHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHhheeccCC
Confidence 34566677777766654433
No 108
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.38 E-value=3.8e+02 Score=22.73 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVHEQGVMIDD 54 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~~Qge~id~ 54 (107)
+++++..+.++.+-+...........+..+.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~ 1016 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433333333
No 109
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=21.24 E-value=1.3e+02 Score=17.41 Aligned_cols=67 Identities=12% Similarity=0.171 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhcchhh
Q 038503 20 REQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIES-----SHASTAQATTQLAKASKIQKSSSSL 86 (107)
Q Consensus 20 r~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~-----a~~~v~~~~~eL~~A~~~~~~~rk~ 86 (107)
..+.|..|..++..-++-..++..-...-.-.++-|-+.+.. ..-++.+|...|+...+.-+++|++
T Consensus 4 NA~~I~~LK~SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 4 NADNINKLKSSIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGIDISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 345677888888888888888888887777888888777764 3567888888888877776666653
No 110
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.68 E-value=1.4e+02 Score=17.60 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038503 18 EEREQGIKEIQEQISEVNEIFKDLAVLVHEQ 48 (107)
Q Consensus 18 ~er~~~i~~le~~i~~l~~l~~~l~~~V~~Q 48 (107)
.+|...+.++++.+.+..++..+|..++..-
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677778888888888888888888887643
No 111
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=20.68 E-value=2.3e+02 Score=20.10 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 038503 21 EQGIKEIQEQISEVNEIFKDLAVLVHEQGVMIDDISSNIESSHAST 66 (107)
Q Consensus 21 ~~~i~~le~~i~~l~~l~~~l~~~V~~Qge~id~Ie~nv~~a~~~v 66 (107)
......+.....++.....+++.-+.+|...++.+...++.....+
T Consensus 58 ~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~~el~~~~ 103 (341)
T 3zx6_A 58 RNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATV 103 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666666666666665555554444443333
No 112
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.56 E-value=3.2e+02 Score=21.55 Aligned_cols=23 Identities=9% Similarity=0.229 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038503 24 IKEIQEQISEVNEIFKDLAVLVH 46 (107)
Q Consensus 24 i~~le~~i~~l~~l~~~l~~~V~ 46 (107)
++.++++=.+..+.|+.+..++.
T Consensus 73 LEdlsKnsKdseqy~k~~~E~Lr 95 (562)
T 3ghg_A 73 LFEYQKNNKDSHSLTTNIMEILR 95 (562)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhchhHHHHHHHHHHHHH
Confidence 33444444444455555555443
No 113
>2w3z_A Putative deacetylase; PGDA, glcnac DE-N-acetylase, hydrolase, divale metal cation dependent, carbohydrate esterase family 4; 1.45A {Streptococcus mutans UA159}
Probab=20.55 E-value=21 Score=25.55 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred HhhcchhhHHHHHHHH
Q 038503 79 IQKSSSSLSCLLLVIF 94 (107)
Q Consensus 79 ~~~~~rk~~~~~~~i~ 94 (107)
+.+++|...+++.+++
T Consensus 15 ~~~~~~~~~~~~~~~~ 30 (311)
T 2w3z_A 15 FSAKNRPNLLFSLLII 30 (311)
T ss_dssp ----------------
T ss_pred EEeccchhhhHHHHHH
Confidence 3344444334333333
No 114
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=20.54 E-value=1.1e+02 Score=16.03 Aligned_cols=28 Identities=18% Similarity=0.253 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038503 55 ISSNIESSHASTAQATTQLAKASKIQKS 82 (107)
Q Consensus 55 Ie~nv~~a~~~v~~~~~eL~~A~~~~~~ 82 (107)
|..++.++...+..+...|.++.++-.+
T Consensus 12 ISseL~~iNnsL~~A~~~I~eSn~~L~~ 39 (48)
T 2fyz_B 12 ISTELSKVNASLQNTVKYIKESNHQLQS 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666666655443
Done!