BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038509
(806 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 1046 bits (2705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/802 (62%), Positives = 636/802 (79%), Gaps = 14/802 (1%)
Query: 10 DDECSVTGEKREIGFIDFQDDHSVLSYDPSGEGPVIISVPFPFVQGKPQSILVGETSKCS 69
DDE SV +K EIGFID+Q+D S Y+P EGPV++SVPFPF + KPQS+ VGETS S
Sbjct: 9 DDEYSVIADKGEIGFIDYQNDGSSGCYNPFDEGPVVVSVPFPFKKEKPQSVTVGETSFDS 68
Query: 70 ITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSIEDRVLQP 129
T++NT EPV++W +IY S P +S TLS+++PPS D ++ Q F E F++EDR+L+P
Sbjct: 69 FTVKNTMDEPVDLW-TKIYASNPEDSFTLSILKPPSKDSDLKERQCFYETFTLEDRMLEP 127
Query: 130 LRTLTIWLSCKPKEMGLHKSVVQFDIGDDRFERMVLLLAEDSVSRSLASNRPYSRVPR-- 187
TLTIW+SCKPK++GLH +VV D G DR ER+V LLAED +S SL SNRPYSR R
Sbjct: 128 GDTLTIWVSCKPKDIGLHTTVVTVDWGSDRVERVVFLLAEDKISSSLTSNRPYSRSRRAP 187
Query: 188 KMQSAVDEYVASSSPARTTTEARTTKRGSNYKLPEFPIPNDVRESLANKILPQFLVEGLV 247
K AVD+YV S P++ +R +LP + IP ++RE + NK P L EGL
Sbjct: 188 KKDFAVDDYVKGSRPSKVV------ERSFRNRLPLYEIPKEIREMIENKEFPDDLNEGLT 241
Query: 248 RKNYFSFFSTLLVMEELRLEEDMRCHSMECVTMRRKGAHLLALDVPGLAERRPSLVHGDF 307
+NY +++ TLL+MEEL+LEEDMR + ME V+M+R+G +L +L+VPGLAERRPSLVHGDF
Sbjct: 242 ARNYANYYKTLLIMEELQLEEDMRAYDMENVSMKRRGIYL-SLEVPGLAERRPSLVHGDF 300
Query: 308 VFVKLAAANA--DAKKGSIYRVEADEVILKFAKEFHTQHRNGSLYNVSFTYNRINMRRMY 365
+FV+ A + A +G ++RVEADEV +KFA EFH +H GS+YNV FTYNRIN RR+Y
Sbjct: 301 IFVRHAYDDGTDHAYQGFVHRVEADEVHMKFASEFHQRHTAGSVYNVRFTYNRINTRRLY 360
Query: 366 QAVQAAENLEPNLLFPSQSTKRRSIKAAPFVPFN-SLNEEQTRSVEIILGCKGAPPYVIY 424
QAV AAE L+PN LFPS + +R IK PFVP + +LN EQ S+E++LGCKGAPPYVI+
Sbjct: 361 QAVDAAEMLDPNFLFPSLHSGKRMIKTKPFVPISPALNAEQICSIEMVLGCKGAPPYVIH 420
Query: 425 GPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRL 484
GPPGTGKTMTLVEAI+Q+Y+T+ ++R+LVCA SNSAADH+LE+L+ E IK+NEI RL
Sbjct: 421 GPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCLEGVRIKDNEIFRL 480
Query: 485 NATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFS 544
NA +R YE++ + IRFCFF+E IFKCPP +AL RY++++STYMS+SLLN G+ RG+F+
Sbjct: 481 NAATRSYEEIKPEIIRFCFFDELIFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFT 540
Query: 545 HIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERL 604
HI LDEAGQASEPE+MI ++NLC +TVVVLAGDP+QLGPVIYS+DAE+ GLGKSYLERL
Sbjct: 541 HILLDEAGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERL 600
Query: 605 FECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPN 664
FEC++Y GDE YVTKLV+NYRCHP ILDLPSKLFY GEL+A K+D S+ A ++ PN
Sbjct: 601 FECDYYCEGDENYVTKLVKNYRCHPEILDLPSKLFYDGELVASKEDTDSV-LASLNFLPN 659
Query: 665 KDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQV 724
K+FP++F+GIQGCDEREGNNPSWFNR E+SKV++ I +L N + E DIGVITPYRQQV
Sbjct: 660 KEFPMVFYGIQGCDEREGNNPSWFNRIEISKVIETIKRLTANDCVQEEDIGVITPYRQQV 719
Query: 725 LKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRF 784
+KIK+VL+ DM +VKVG+VEQFQGQE++VII+STVRST+KHNEFDR YCLGFLSNPRRF
Sbjct: 720 MKIKEVLDRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRF 779
Query: 785 NVAITRARSLLIIVGNPHIVCQ 806
NVAITRA SLL+I+GNPHI+C+
Sbjct: 780 NVAITRAISLLVIIGNPHIICK 801
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust.
Identities = 289/754 (38%), Positives = 414/754 (54%), Gaps = 106/754 (14%)
Query: 139 CKPKEMGLHKSVVQFDIGD---DRFERMVLLLAEDSVSRSLASNRPYSRVPRKMQSAVDE 195
C K G K ++ D R+ + ++ E+S+ +A+ P+S +K++S+
Sbjct: 417 CDGKNPGRCKELLLLCFSDFLIGRYLEVNVISGEESL---IAAREPFSW--KKLKSS-QA 470
Query: 196 YVASSSPARTTTEARTTKRGSNYKLPEFPIPNDVRESLANKI----LPQFLVEGLVRKNY 251
++ + T + R ++R LP++PIP+ +R+ + KI L E L NY
Sbjct: 471 LTSAKTTVVVTAQKRNSRRQLPSFLPQYPIPDRLRKCVEQKIDILTFQPLLAELLNMSNY 530
Query: 252 FSFFSTLLVMEELRLEEDMRCHSMECVTMRRKGAHLLALDVPGLAERRPSLVHGDFVFVK 311
FSTLL +EE+ E +++ ++M + +RR G LL L+VPGLAE RPSL GD + +K
Sbjct: 531 KEKFSTLLWLEEIYAEMELKEYNMSGIILRRNG-DLLVLEVPGLAEGRPSLYAGDKLILK 589
Query: 312 LAAANADAKKGSIYRVEADE--VILKFAKEFHTQHRNGSLYNVSFTYNRINMRRMYQAVQ 369
N A + Y E E V LK EF Q N +V FTYNR RR + A++
Sbjct: 590 TQEYNGHAIEYISYVTEIHEEDVTLKINPEFE-QAYNFEPMDVEFTYNRTTSRRCHFALE 648
Query: 370 AAENLEPNLLFP-----------------------SQSTKRRSIKA-------------- 392
+L +LFP QST +++ K
Sbjct: 649 HVIHLGVKVLFPEEIILQSPQVTGNWNHAQDTKSSGQSTSKKNRKTMTDQAEHGTEERRV 708
Query: 393 --------APFVP-------------------FNS-LNEEQTRSVEIILGCKGAP-PYVI 423
APF FN LNE Q +V+ IL P PY++
Sbjct: 709 GDKDLPVLAPFTAEMSDWVDEIQTPKARKMEFFNPVLNENQKLAVKRILSGDCRPLPYIL 768
Query: 424 YGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILR 483
+GPPGTGKT+T++EA+LQV+ SRILVCA SNSAAD + RL ++V ++ ++R
Sbjct: 769 FGPPGTGKTVTIIEAVLQVHFALPDSRILVCAPSNSAADLVCLRLHESKV--LQPATMVR 826
Query: 484 LNATSRPYEDVPTDFIR-FCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGN 542
+NAT R +E++ D ++ +C E I+K R+RIII+T SS L G++ G+
Sbjct: 827 VNATCR-FEEIVIDAVKPYCRDGEDIWKA------SRFRIIITTCSSSGLFYQIGVRVGH 879
Query: 543 FSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLE 602
F+H+F+DEAGQASEPE +IP+ + +VLAGDP QLGPVI S+ A +GL S+LE
Sbjct: 880 FTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGDPMQLGPVIKSRLAMAYGLNVSFLE 939
Query: 603 RLFECEFYRNGDEGY----------VTKLVRNYRCHPAILDLPSKLFYGGELLACKDDAT 652
RL Y+ + + VTKLV+NYR H A+L LPS+LFY EL C D
Sbjct: 940 RLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSHEALLMLPSRLFYHRELEVCADPTV 999
Query: 653 SLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRE--NTELN 710
S + P K FP++F G++G + REG +PSWFN E +V+ L +++++
Sbjct: 1000 VTSLLGWEKLPKKGFPLIFHGVRGSEAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVS 1059
Query: 711 ETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFD 770
+DIGVITPYR+QV KI+ +L D+ D+KVG+VE+FQGQE VII+STVRS E D
Sbjct: 1060 ASDIGVITPYRKQVEKIRILLRNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDD 1119
Query: 771 RTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
R Y LGFLSN +RFNVAITR ++LLI++GNPH++
Sbjct: 1120 R-YFLGFLSNSKRFNVAITRPKALLIVLGNPHVL 1152
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 282/752 (37%), Positives = 424/752 (56%), Gaps = 71/752 (9%)
Query: 113 DQGFLEGFSIEDRVLQPLRTLTIWLSCKPKEMGLHKSVVQFDI-----GDDRFERMVLLL 167
+QG +G ++ VL P I + C G ++VV F+ G R + +
Sbjct: 186 EQGVTQGQAL---VLHPGGAYPIQVRCLTSHNGFFRAVVMFEFSKEPDGSFSIGRSIAAI 242
Query: 168 AEDSVSRSLASNRPYSRVPRKMQSAVDEYVASSSPARTTTEARTTKRGSNYKLPEFPIPN 227
A+ ++R L + PY +Q + P ++ + K L +P P
Sbjct: 243 AQSPLARELGPSAPYRPYQASLQRPITVVTEDGVPPVSSLKNELEK---EIPLGTYPYPK 299
Query: 228 DVRES--LANKILP-------QFLVEG-LVRKNYFSFFSTLLVMEELRLEEDMRCHSMEC 277
++E+ L K P Q L+E L +NY F LL +EE++LE D+R + ++
Sbjct: 300 SLKETIMLGPKTSPDSSWMKMQSLLEAPLQPENYKQKFELLLHLEEIQLEVDIRRYDLQE 359
Query: 278 VTMRRKGAHLLALDVPGLAERRPSLVHGDFVFVKLAAANADAK----KGSIYRVEADEVI 333
V M + A LL L+VPG+AE RPS++ GD +F L++ + KG ++ VE + V
Sbjct: 360 VPMVQNRA-LLLLNVPGVAENRPSVLRGDHLFASLSSERDSSPRVLYKGYVHGVELERVQ 418
Query: 334 LKFAKEFHTQHRNGSLYNVSFTYNRINMRRMYQAVQAA--ENLEPNLLFPSQSTKRRSIK 391
L F+ + + N ++V+FT+NR+ ++ ++A A + L+ ++LFPS S +R S+
Sbjct: 419 LGFSPKLMKKFVNDLKFDVTFTFNRLPLQVQHRAAAMAMQKGLD-SVLFPSASCQR-SLF 476
Query: 392 AAPFVP--FN---SLNEEQTRSVE-IILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST 445
F P F+ NEEQ ++V+ I+ G PY+I+GPPGTGKT+TLVEAI QV+S
Sbjct: 477 TGIFQPRWFDRKVEANEEQCQAVKHIVTGMSRPAPYLIFGPPGTGKTVTLVEAIKQVWSC 536
Query: 446 REHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFE 505
+ +RIL CA SNSAAD + +RL++N I I R+ A+S Y+DVP D C ++
Sbjct: 537 FKDARILACAPSNSAADLLCQRLLTN----IAPRYIYRIMASSANYKDVPADVRPCCNWD 592
Query: 506 ES--IFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPI 563
+S + P ++ L YRI+I+T +++ L + G FSH+F+DE G A EPES++ I
Sbjct: 593 DSEKCYVYPSKKLLKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVVAI 652
Query: 564 ANLCTKQT--------VVVLAGDPKQLGPVIYSKDAETFGLGKSYLERL-FECEFYRNGD 614
A L T +VLAGDP+QLGPV S A GLG S LERL Y D
Sbjct: 653 AGLLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSD 712
Query: 615 EGY----VTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSS--AKVDIFPNKDFP 668
EGY VTKL+ NYR H AIL +P++LFY EL A + + + + PN+ P
Sbjct: 713 EGYNPQFVTKLLWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGVP 772
Query: 669 VLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKL------RENTELNETDIGVITPYRQ 722
++F G+ G DERE +PS+FN E+ VV + KL R ++ +IG+I+PYR+
Sbjct: 773 IIFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRK 832
Query: 723 QVLKIKKVLETWD-----MPDV---KVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYC 774
QV KI+ + + D +PD+ KVG+VE+FQGQER VI++STVRS ++ + D+T+
Sbjct: 833 QVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFR 892
Query: 775 LGFLSNPRRFNVAITRARSLLIIVGNPHIVCQ 806
LGFL NP+R NVA+TRA++LLI+VGN ++ +
Sbjct: 893 LGFLKNPKRLNVALTRAKALLIVVGNAAVLSK 924
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 245/600 (40%), Positives = 366/600 (61%), Gaps = 34/600 (5%)
Query: 236 KILPQFLVEGLVRKNYFSFFSTLLVMEELRLEEDMRCHSMECVTMRR-KGAHLLALDVPG 294
K L L L NY F LL +EE ++ D++ ++ + VT+ R + L+ L++PG
Sbjct: 355 KDLQSLLQSPLTFDNYAERFDLLLYLEECQMHVDIKRYNKDSVTLHRDRDKRLMGLNLPG 414
Query: 295 LAERRPSLVHGDFVFV----KLAAANADAKKGSIYRVEADEVILKFAKEFHTQ-HRNGSL 349
++E RPS++ GD + + ++ +N KG ++RVE D+V L +K F + +
Sbjct: 415 VSENRPSVLRGDHLLLTKSEEVTFSNVTKYKGYVHRVELDQVKLGLSKRFLKDVYIDKMK 474
Query: 350 YNVSFTYNRINMRRMYQAVQAA--ENLEPNLLFPSQSTKRRSIKAAPFVPFN---SLNEE 404
+ V FT NRI +R ++AV A NL+ ++LFP S + F+ N +
Sbjct: 475 FRVEFTVNRIPVRLQHRAVHMAVQHNLK-DVLFPMASRSLNPVSPPALRLFDRKLEYNFQ 533
Query: 405 QTRSV-EIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADH 463
Q +V I+ G PY+++GPPGTGKT+T+VEAI QV + IL CA SNSAAD
Sbjct: 534 QYSAVCNIVAGTSKPAPYLVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQ 593
Query: 464 MLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRII 523
+ E+LI++E + ++I RL A+SR +D+P C +E + P +E L Y+I+
Sbjct: 594 LCEKLITSE--HVDAHKIYRLYASSRNQKDIPKILKDNCNVDEEMIDFPCKEDLMSYKIL 651
Query: 524 ISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLC-TKQTVVVLAGDPKQL 582
I T +++ L T G +F+H F+DEAG A E E++I +A L ++ +VLAGDPKQL
Sbjct: 652 ICTLVTAGRLVTGGFSEDHFTHNFVDEAGHAVESETIISVAGLLNAEKGQLVLAGDPKQL 711
Query: 583 GPVIYSKDAETFGLGKSYLERLF-ECEFYRNGD----EGYVTKLVRNYRCHPAILDLPSK 637
GP++ S A GL S LERL + + Y+ GD YV+KL+ NYR HP IL++P++
Sbjct: 712 GPILRSPLAINHGLDVSLLERLMTQNDLYKRGDVEFDNRYVSKLIMNYRSHPYILEVPNR 771
Query: 638 LFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVV 697
LFY GEL AC D+ +S + P+K FPV+F G+ G DERE N+PS+FN +E++ +V
Sbjct: 772 LFYDGELKACADEISSNQYCMWEHLPSKGFPVIFHGVPGKDERESNSPSFFNIYEINILV 831
Query: 698 DIINKL------RENTELNETDIGVITPYRQQVLKIKKVLET-------WDMPDVKVGTV 744
D + KL + + + DIG+I PYR+QV KIK+ ++ + ++KVG+V
Sbjct: 832 DYLKKLLLTQPKKGISRIFPKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSV 891
Query: 745 EQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
E+FQGQER+VI+VSTVRS+VK+ D T+ +GFL N +RFNVA+TRA+SLLI+VGNP I+
Sbjct: 892 EEFQGQERKVIMVSTVRSSVKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMIL 951
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust.
Identities = 238/584 (40%), Positives = 360/584 (61%), Gaps = 31/584 (5%)
Query: 250 NYFSFFSTLLVMEELRLEEDMRCHSMECVTM-RRKGAHLLALDVPGLAERRPSLVHGDFV 308
NY F LL +EE ++ D++ ++ + V+M R + LL L++PG++E RPS++ GD +
Sbjct: 365 NYMDRFDLLLYLEEDQMRMDIKRYNKKDVSMVRDRDKKLLVLELPGVSENRPSVLRGDHL 424
Query: 309 FV----KLAAANADAKKGSIYRVEADEVILKFAKEFHTQHRNGSLYNVSFTYNRINMRRM 364
+ +L +N KG ++RVE D+V L F+K + + ++V FT NR+ +R
Sbjct: 425 LLTKSEELQNSNVTKYKGYVHRVELDQVKLGFSKRLLERFIDNMKFSVEFTINRLPLRLQ 484
Query: 365 YQAVQ-AAENLEPNLLFPSQSTKRRSIKAAPFVPFNSL---NEEQTRSV-EIILGCKGAP 419
++AV ++ ++LFP S + + + F+ N EQ +V I+ G
Sbjct: 485 HRAVHMVVQHHLKDVLFPVASRRLNPVSPSALRLFDQKLEKNPEQKTAVCNIVAGTSKPA 544
Query: 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479
PY+++GPPGTGKT+T+VEAI QV +RIL CA SNSAAD + E+LI+++ +
Sbjct: 545 PYLVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLITSQ--HVDAR 602
Query: 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIK 539
I R+ A+SR +++P E P +E L Y+I++ T +++ L + G
Sbjct: 603 NIYRIYASSRNPKEIPKVLENNSNVEGENIIFPCKEDLMPYKIVVCTLVTAGRLVSGGFP 662
Query: 540 RGNFSHIFLDEAGQASEPESMIPIANLCTKQT-VVVLAGDPKQLGPVIYSKDAETFGLGK 598
G+FSHIF+DEAG A EPE +I +A L +T +VLAGDPKQLGP++ S A +GLG
Sbjct: 663 VGHFSHIFVDEAGHAVEPEIVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGL 722
Query: 599 SYLERLF-ECEFYRNGDEG----YVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATS 653
S LERL + E Y+ GD G YVTKL++NYR HP+IL +P++LFY EL AC D+ +S
Sbjct: 723 SLLERLMTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNELKACADEISS 782
Query: 654 LSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKL------RENT 707
+ P + FPV+F G+ G DERE +PS+FN E+ K++D + KL +
Sbjct: 783 RQYCTWEHLPKRGFPVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIA 842
Query: 708 ELNETDIGVITPYRQQVLKIKKVLETW-------DMPDVKVGTVEQFQGQEREVIIVSTV 760
+++ DIG+I PYR+QV KI++ ++ + ++KVG+VE+FQGQER+VIIVSTV
Sbjct: 843 KISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTV 902
Query: 761 RSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
RS+ +H D + +GFL N +RFNVA+TRA++LLI+VGNP I+
Sbjct: 903 RSSKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNPIIL 946
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 235/588 (39%), Positives = 345/588 (58%), Gaps = 60/588 (10%)
Query: 265 RLEEDMRCHSMECVTMR----RKGAHLLALDVPGLAERRPSLVHGDFVFVKLAAANAD-- 318
++E D+R + +E V M + LL L+VPG+AE RPS++ GD +F L++
Sbjct: 350 QMEHDIRHYDLESVPMTWDPIDRNPRLLTLEVPGVAESRPSVLRGDHLFALLSSETHHED 409
Query: 319 --AKKGSIYRVEADEVILKFAKEFHTQHRNGSLYNVSFTYNRINMRRMYQAVQAAEN--L 374
KG +++VE D V L F+ ++ +G + V+FT+NR +R ++A++ L
Sbjct: 410 PVTYKGFVHKVELDRVKLSFSTSLLSRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWPL 469
Query: 375 EPNLLFPSQSTKRRSIKAAPFVPFN--------SL--NEEQTRSVE-IILGCKGAPPYVI 423
EP +LFP S + P +P + SL N EQ ++++ I++G PY+I
Sbjct: 470 EP-MLFPVAS------RGVPLLPSDVKLKLYDRSLESNPEQLQAMKHIVMGTTRPAPYII 522
Query: 424 YGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILR 483
+GPPGTGKT+TLVEAI QV + IL CA SNS AD + +RL + + I R
Sbjct: 523 FGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVH-----LPSSIYR 577
Query: 484 LNATSRPYEDVPTDFIRFCFFE--ESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRG 541
L A SR VP D C ++ + F P ++ L YR++I+T +++S L +
Sbjct: 578 LLAPSRDIHLVPEDIKPCCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPID 637
Query: 542 NFSHIFLDEAGQASEPESMIPIANLCTKQTV------VVLAGDPKQLGPVIYSKDAETFG 595
+F+HIF+DEAG A EPES++ IA L + +VLAGDP+QLGPV+ + G
Sbjct: 638 HFTHIFIDEAGHAMEPESLVAIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHG 697
Query: 596 LGKSYLERLFECE-FYRNGDEGY----VTKLVRNYRCHPAILDLPSKLFYGGELLACKDD 650
LG S LERL Y+ G +GY +TKL+RNYR HP ILD+P++L+Y GEL AC D
Sbjct: 698 LGYSLLERLLTFNALYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACADV 757
Query: 651 ATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKL------R 704
+ + P +DFP++F G+ G DEREGN+PS+FN E + V + +L +
Sbjct: 758 VDRERFCRWEGLPRQDFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKK 817
Query: 705 ENTELNETDIGVITPYRQQVLKIKKVLETW--------DMPDVKVGTVEQFQGQEREVII 756
L+ +GVI+PYR+QV KI+ + D+ D+KVG+VE+FQGQER VI+
Sbjct: 818 GKARLSPRSVGVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVIL 877
Query: 757 VSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
+STVRS+ + D + LGFL NP+RFNVA+TRA++LLI+VGNP ++
Sbjct: 878 ISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLL 925
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 380 bits (977), Expect = e-104, Method: Compositional matrix adjust.
Identities = 236/585 (40%), Positives = 345/585 (58%), Gaps = 54/585 (9%)
Query: 265 RLEEDMRCHSMECVTMR----RKGAHLLALDVPGLAERRPSLVHGDFVFVKLAAANAD-- 318
++E D+R + ++ V M + LL L+VPG+AE RPS++ GD +F L++
Sbjct: 351 QMEHDIRHYDLDSVPMTWDPVDQNPRLLTLEVPGVAESRPSVLRGDHLFALLSSETQQDD 410
Query: 319 --AKKGSIYRVEADEVILKFAKEFHTQHRNGSLYNVSFTYNRINMRRMYQAVQAAEN--L 374
KG +++VE D V L F+ ++ +G + V+FT+NR +R ++A++ L
Sbjct: 411 PVTYKGFVHKVELDRVKLSFSTSLLSRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWVL 470
Query: 375 EPNLLFPSQSTKRRSIKAAPF-VPFN----SL--NEEQTRSVE-IILGCKGAPPYVIYGP 426
P +LFP S R + P V F SL N EQ ++++ I+ G PY+I+GP
Sbjct: 471 WP-MLFPVAS---RGVSLLPSDVKFKLYDRSLESNPEQLQAMKHIVRGTTRPAPYIIFGP 526
Query: 427 PGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNA 486
PGTGKT+TLVEAI QV + IL CA SNS AD + +RL + + I RL A
Sbjct: 527 PGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVH-----LPSSIYRLLA 581
Query: 487 TSRPYEDVPTDFIRFCFFE--ESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFS 544
SR VP D C ++ + + P ++ L +YR++I+T +++S L + +F+
Sbjct: 582 PSRDIRMVPEDIKTCCNWDAKKGEYVYPAKKHLQQYRVLITTLITASRLVSAQFPIDHFT 641
Query: 545 HIFLDEAGQASEPESMIPIANLC-TKQT-----VVVLAGDPKQLGPVIYSKDAETFGLGK 598
HIF+DEAG EPES++ IA L K+T +VLAGDP+QLGPV+ S A GLG
Sbjct: 642 HIFIDEAGHCMEPESLVAIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLGY 701
Query: 599 SYLERLFEC-EFYRNGDEGY----VTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATS 653
S LERL Y+ G GY +TKL+RNYR HP ILD+P++L+Y GEL AC D
Sbjct: 702 SLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQACADVVDR 761
Query: 654 LSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKL------RENT 707
+ + P + FP++F G+ G DEREGN+PS+FN E + V + +L +
Sbjct: 762 ERFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKA 821
Query: 708 ELNETDIGVITPYRQQVLKIKKVLETW--------DMPDVKVGTVEQFQGQEREVIIVST 759
L+ ++GVI+PYR+QV KI+ + D+ D+KVG+VE+FQGQER VI++ST
Sbjct: 822 RLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVILIST 881
Query: 760 VRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
VRS+ + D + LGFL NP+RFNVA+TRA++LLI+VGNP ++
Sbjct: 882 VRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNPLLL 926
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 233/589 (39%), Positives = 339/589 (57%), Gaps = 62/589 (10%)
Query: 265 RLEEDMRCHSMECVTMR----RKGAHLLALDVPGLAERRPSLVHGDFVFVKLAAANAD-- 318
++E D+R + +E V M + LL L+VPG+ E RPS++ GD +F L++
Sbjct: 350 QMEHDIRHYDLESVPMTWDPVDQNPRLLTLEVPGVTESRPSVLRGDHLFALLSSETHQED 409
Query: 319 --AKKGSIYRVEADEVILKFAKEFHTQHRNGSLYNVSFTYNRINMRRMYQAVQ-AAENLE 375
KG +++VE D V L F+ ++ +G + V+FT+NR +R ++A++ L
Sbjct: 410 PITYKGFVHKVELDRVKLSFSMSLLSRFVDGLTFKVNFTFNRQPLRVQHRALELTGRWLL 469
Query: 376 PNLLFPSQSTKRRSIKAAPFVPFN--------SL--NEEQTRSV-EIILGCKGAPPYVIY 424
+LFP + + P +P + SL N EQ +++ I+ G PY+I+
Sbjct: 470 WPMLFPV------APRDVPLLPSDVKLKLYDRSLESNPEQLQAMRHIVTGTTRPAPYIIF 523
Query: 425 GPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRL 484
GPPGTGKT+TLVEAI QV + IL CA SNS AD + +RL + + I RL
Sbjct: 524 GPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRLRVH-----LPSSIYRL 578
Query: 485 NATSRPYEDVPTDFIRFCFFE----ESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKR 540
A SR VP D C ++ E +F P ++ L YR++I+T +++ L +
Sbjct: 579 LAPSRDIRMVPEDIKPCCNWDAKKGEYVF--PAKKKLQEYRVLITTLITAGRLVSAQFPI 636
Query: 541 GNFSHIFLDEAGQASEPESMIPIANLC-TKQT-----VVVLAGDPKQLGPVIYSKDAETF 594
+F+HIF+DEAG EPES++ IA L K+T +VLAGDP+QLGPV+ S +
Sbjct: 637 DHFTHIFIDEAGHCMEPESLVAIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKH 696
Query: 595 GLGKSYLERLFEC-EFYRNGDEGY----VTKLVRNYRCHPAILDLPSKLFYGGELLACKD 649
GLG S LERL Y+ G +GY +TKL+RNYR HP ILD+P++L+Y GEL AC D
Sbjct: 697 GLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQACAD 756
Query: 650 DATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKL------ 703
+ P + FP++F G+ G DEREGN+PS+FN E + V + L
Sbjct: 757 VVDRERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLAPSSK 816
Query: 704 RENTELNETDIGVITPYRQQVLKIKKVLETWD--------MPDVKVGTVEQFQGQEREVI 755
+ L+ +GVI+PYR+QV KI+ + D + D+KVG+VE+FQGQER VI
Sbjct: 817 KGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVI 876
Query: 756 IVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
++STVRS+ + D + LGFL NP+RFNVA+TRA++LLIIVGNP ++
Sbjct: 877 LISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNPLLL 925
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 345 bits (884), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 198/418 (47%), Positives = 267/418 (63%), Gaps = 24/418 (5%)
Query: 401 LNEEQTRSVEIILGCKGAP-PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNS 459
LNE Q +V IL P PY+++GPPGTGKT+T++EA+LQV+ SRILVCA SNS
Sbjct: 747 LNENQKLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRILVCAPSNS 806
Query: 460 AADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIR-FCFFEESIFKCPPREALG 518
AAD + RL ++V K ++R+NAT R +E+ D I+ +C E I++
Sbjct: 807 AADLVCLRLHESKVP--KPAAMVRVNATCR-FEETIIDAIKPYCRDGEDIWRA------S 857
Query: 519 RYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGD 578
R+RIII+T S+ L G++ G F+H+F+DEAGQASEPE +IP+ + +VLAGD
Sbjct: 858 RFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVLAGD 917
Query: 579 PKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGY----------VTKLVRNYRCH 628
P QLGPVI S+ A +GL S LERL Y + + VTKLV+NYR H
Sbjct: 918 PMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKNYRSH 977
Query: 629 PAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWF 688
A+L LPS+LFY EL C D S + P K FP++F G++G + REG +PSWF
Sbjct: 978 SALLALPSRLFYHRELEVCADPKVVTSLLGWEKLPRKGFPLIFHGVRGNEAREGRSPSWF 1037
Query: 689 NRFEVSKVVDIINKLRE--NTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQ 746
+ E +V+ L +++++ DIGVITPYR+QV KIK +L D+ D+KVG+VE+
Sbjct: 1038 SPAEAVQVMRYCCLLARSVSSQVSSKDIGVITPYRKQVEKIKILLRNVDLTDIKVGSVEE 1097
Query: 747 FQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
FQGQE VI++STVRS E DR Y LGFLSN +RFNVAITR ++LLII+GNPH++
Sbjct: 1098 FQGQEYLVIVISTVRSNEDRFEDDR-YFLGFLSNSKRFNVAITRPKALLIILGNPHVL 1154
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/265 (30%), Positives = 131/265 (49%), Gaps = 13/265 (4%)
Query: 126 VLQPLRTLTIWLSCKPKEMGLHKSVVQFDIGDDRFERMVLLLAEDSVSRSLASNRPYS-R 184
++ P I ++C K G K ++ D R + + S +A P+S +
Sbjct: 344 LIPPGEKTHIVVTCSAKNPGRCKELLLLCFSDFLIGRHLEVSVVSSEEALIAVREPFSWK 403
Query: 185 VPRKMQSAVDEYVASSSPARTTTEARTTKRGSNYKLPEFPIPNDVRESLANKI----LPQ 240
P+ Q+ V++ + TT+ R ++R LP++PIP+ +++ + KI
Sbjct: 404 KPKSSQT----LVSAKTTVVVTTQKRNSRRQLPSFLPQYPIPDRLKKCVEQKIDILTFQP 459
Query: 241 FLVEGLVRKNYFSFFSTLLVMEELRLEEDMRCHSMECVTMRRKGAHLLALDVPGLAERRP 300
L E L NY FSTLL +EE+ E +++ ++M V ++RKG LL L+VPGLAE RP
Sbjct: 460 LLAELLNMSNYKEKFSTLLWLEEIHAEIELKEYNMSRVVLKRKG-DLLVLEVPGLAESRP 518
Query: 301 SLVHGDFVFVKLAAANADAKK--GSIYRVEADEVILKFAKEFHTQHRNGSLYNVSFTYNR 358
SL GD + +K N + G + + ++V LK F Q N +V FTYNR
Sbjct: 519 SLYAGDKLILKSQEYNGHVIEYIGYVMEIHEEDVTLKLNPGFE-QMYNFEPMDVEFTYNR 577
Query: 359 INMRRMYQAVQAAENLEPNLLFPSQ 383
RR + A++ +L +LFP +
Sbjct: 578 TTSRRCHYALEQVIHLGVKVLFPEE 602
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 226/664 (34%), Positives = 357/664 (53%), Gaps = 75/664 (11%)
Query: 211 TTKRGSNYKLPEFPIPNDVRESLAN--------KILPQ---FLVEGLVRKNYFSFFSTLL 259
T +R +L F +P ++R+ K + Q FL E L K Y F LL
Sbjct: 565 TKRRFVALRLGCFEVPKELRQICLTSERRQEMIKAIEQHYSFLTEPLSIKTYMHRFRLLL 624
Query: 260 VMEELRLEEDMRCHSMECVTMRRKGAHLLALDVPGLAERRPSLVHGDFVFVKLAAANADA 319
+EE+ + R + + R G L L + LAERRPSLV GD + V ++ D+
Sbjct: 625 HLEEIECFVNFRNYDRDRAHFLRDG-EFLTLQIENLAERRPSLVIGDTLRVINPWSDPDS 683
Query: 320 K-----KGSIYRVEADEVILKFAKEFHTQHRNGSLYNVSFTYNRINMRRMYQAVQAAEN- 373
+ +G I++V D ++LKF F ++ NG Y + F ++R + R+ + A+
Sbjct: 684 QTTKSYEGIIHKVLFDRILLKFHSSFQEKY-NGEDYRLEFYFSRYSFRKQHHAISKIVGV 742
Query: 374 LEPNLLFPSQSTKRRSIKAAPFVP-------------FN-SLNEEQTRSV-EIILGCKGA 418
+ + LFPS+ TKR + + ++ +N SLN Q R+V I+ G
Sbjct: 743 MGEDFLFPSKVTKRENPQLDVYMKDDDMYLYDSKLEWYNQSLNSIQKRAVFNILRGEAEN 802
Query: 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKE 478
PYV++GPPG+GKTMTL+E +LQ+ +RILV SNS+AD + +RLI ++ + +
Sbjct: 803 IPYVLFGPPGSGKTMTLIETLLQLVRNLPGARILVGTPSNSSADLVTKRLIDSK--ALLQ 860
Query: 479 NEILRLNATSRPYED-VPTDFIRFCFFEE--SIFKCPPR--------------EALGRYR 521
+ +RL + ++ +D +P + + +C + ++ C + + +G +R
Sbjct: 861 GDFIRLVSYNQVEKDLIPPEIMSYCATSDVGAVGSCEDKMMVTESGLKLRCQAKFIGTHR 920
Query: 522 IIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQ 581
I IST + G G+F+H+ DEAGQ +EPE+M+PI L K++ VVL+GDP+Q
Sbjct: 921 ITISTCTTLGNFLQLGFPAGHFTHVLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQ 980
Query: 582 LGPVIYSKDAETFGLGKSYLERLFECEFYRNG------DEGY----VTKLVRNYRCHPAI 631
L ++ S+ A G S+LERL E YR GY +TKL+ NYR P+I
Sbjct: 981 LQSIVTSRIASKMGFSISFLERLLERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSI 1040
Query: 632 LDLPSKLFYGGEL---LACKDDATS--LSSAKVDIFPNKDFP----VLFFGIQGCDEREG 682
+ + S+LFY EL L+ KD S LS + KD P F+GI G + +
Sbjct: 1041 MSIYSRLFYDDELIPVLSEKDSRESRLLSKLRCVFESEKDIPQAHGTFFYGIIGENRQNN 1100
Query: 683 NNPSWFNRFEVSKV-VDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKV 741
++PSWFN EV +V + I R N ++ IG+ITPY++QV ++ + D+ K+
Sbjct: 1101 DSPSWFNPQEVREVFLMTIALYRANVTADQ--IGIITPYQKQVKMLRSMFIGTDVVMPKI 1158
Query: 742 GTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNP 801
G+VE+FQGQER++I++STVRS+ + D + LGF+ +R NVA++RAR+++II GNP
Sbjct: 1159 GSVEEFQGQERDIILISTVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNP 1218
Query: 802 HIVC 805
H++
Sbjct: 1219 HLLA 1222
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 165/490 (33%), Positives = 252/490 (51%), Gaps = 61/490 (12%)
Query: 352 VSFTYNRINMRRMYQAVQAAENLEPNLLFPSQSTKRRSIKAAPFVPFNS----------- 400
+ F NR+ + M+ A+ + ++LFP I P +P++
Sbjct: 584 LQFQLNRLPLCEMHYALDRVRDN--SILFPD-------ISLTPTIPWSPNRQWDEQLDPR 634
Query: 401 LNEEQTRSVEIILG--CKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458
LN +Q ++ I PP +I GP GTGKT TL +A+ + E SR+L+C SN
Sbjct: 635 LNAKQKEAILAITTPLSINLPPVLIIGPYGTGKTFTLAQAVKHILKQPE-SRVLICTHSN 693
Query: 459 SAADHMLERLISNEV-AGIKENEILRLNATSRPYEDVPTDFIRFCFFEES--IFKCPPRE 515
SAAD ++ + V AG LR+ +R + V ++C + F+ P R+
Sbjct: 694 SAADLYIKDYLHPYVEAGNPHARPLRVYFRNRWVKTVHPLVQQYCLISGAHFTFQMPTRQ 753
Query: 516 ALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVL 575
+ R+R+++ T +S L ++ G F+HI LDEA QA E E+++P+A L K T VVL
Sbjct: 754 DVERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLA-LAVKSTRVVL 812
Query: 576 AGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLP 635
AGD QL P +YS+ A L S L+RL+E + + L NYR H AI++
Sbjct: 813 AGDHMQLSPFVYSEFARERNLHVSLLDRLYE---HYPSEYPCRILLCENYRSHEAIINYT 869
Query: 636 SKLFYGGELLACKDDATSLSSAKVDIFPNKDF-PVLFFGIQGCDEREGNNPSWFNRFEVS 694
S LFY G+L+A P+KDF P+ FF +G D +E N+ +++N EV
Sbjct: 870 SDLFYEGKLMASGKQP-----------PHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVF 918
Query: 695 KVVDIINKLREN-----TELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQG 749
++V+ + ++R+ +L E IGV++PY QV +I+ L M +V V V QG
Sbjct: 919 EIVERVEEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRAELRKKRMSEVSVERVLNVQG 978
Query: 750 QEREVIIVSTVRS--TVKHNEF----------DRTYCL--GFLSNPRRFNVAITRARSLL 795
++ V+ +STVR+ T KH + D T L GFLSN + N AITRA+SL+
Sbjct: 979 KQFRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLV 1038
Query: 796 IIVGNPHIVC 805
+VG+P +C
Sbjct: 1039 AVVGDPIALC 1048
>sp|P42694|HELZ_HUMAN Probable helicase with zinc finger domain OS=Homo sapiens GN=HELZ
PE=1 SV=2
Length = 1942
Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/490 (33%), Positives = 255/490 (52%), Gaps = 61/490 (12%)
Query: 352 VSFTYNRINMRRMYQAVQAAENLEPNLLFPSQSTKRRSIKAAPFVPFNS----------- 400
+ F NR+ + M+ A+ + + +LFP I P +P++
Sbjct: 591 LQFQLNRLPLCEMHYALDRIK--DNGVLFPD-------ISMTPTIPWSPNRQWDEQLDPR 641
Query: 401 LNEEQTRSVEIILG--CKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458
LN +Q +V I PP +I GP GTGKT TL +A+ + +E +RIL+C SN
Sbjct: 642 LNAKQKEAVLAITTPLAIQLPPVLIIGPYGTGKTFTLAQAVKHILQQQE-TRILICTHSN 700
Query: 459 SAADHMLERLISNEV-AGIKENEILRLNATSRPYEDVPTDFIRFCFFE--ESIFKCPPRE 515
SAAD ++ + V AG + LR+ +R + V ++C S F+ P +E
Sbjct: 701 SAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKE 760
Query: 516 ALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVL 575
+ ++R+++ T +S L ++ G F+HI LDEA QA E E+++P+A L T+ T +VL
Sbjct: 761 DILKHRVVVVTLNTSQYLCQLDLEPGFFTHILLDEAAQAMECETIMPLA-LATQNTRIVL 819
Query: 576 AGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLP 635
AGD QL P +YS+ A L S L+RL+E + + L NYR H AI++
Sbjct: 820 AGDHMQLSPFVYSEFARERNLHVSLLDRLYE---HYPAEFPCRILLCENYRSHEAIINYT 876
Query: 636 SKLFYGGELLACKDDATSLSSAKVDIFPNKDF-PVLFFGIQGCDEREGNNPSWFNRFEVS 694
S+LFY G+L+A +KDF P+ FF +G D +E N+ +++N EV
Sbjct: 877 SELFYEGKLMASGKQPA-----------HKDFYPLTFFTARGEDVQEKNSTAFYNNAEVF 925
Query: 695 KVVDIINKLREN-----TELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQG 749
+VV+ + +LR +L++ IGV+TPY QV +I+ L + DV V V QG
Sbjct: 926 EVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQG 985
Query: 750 QEREVIIVSTVRS--TVKHNEF----------DRTYCL--GFLSNPRRFNVAITRARSLL 795
++ V+ +STVR+ T KH + D T L GFLSN + N AITRA+SL+
Sbjct: 986 KQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLV 1045
Query: 796 IIVGNPHIVC 805
+VG+P +C
Sbjct: 1046 AVVGDPIALC 1055
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 166/490 (33%), Positives = 255/490 (52%), Gaps = 61/490 (12%)
Query: 352 VSFTYNRINMRRMYQAVQAAENLEPNLLFPSQSTKRRSIKAAPFVPFNS----------- 400
+ F NR+ + M+ A+ ++ +LFP I P +P++
Sbjct: 591 LQFQLNRLPLCEMHYALDRIKDNA--VLFPD-------ISMTPTIPWSPNRQWDEQLDPR 641
Query: 401 LNEEQTRSVEIILG--CKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458
LN +Q +V I PP +I GP GTGKT TL +A + +E +RIL+C SN
Sbjct: 642 LNAKQKEAVLAITTPLSIQLPPVLIIGPYGTGKTFTLAQAAKHILQQQE-TRILICTHSN 700
Query: 459 SAADHMLERLISNEV-AGIKENEILRLNATSRPYEDVPTDFIRFCFFE--ESIFKCPPRE 515
SAAD ++ + V AG + LR+ +R + V ++C +S F+ P +E
Sbjct: 701 SAADLYIKDYLHPYVEAGNPQARPLRVYFRNRWVKTVHPVVHQYCLISSTQSTFQMPQKE 760
Query: 516 ALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVL 575
+ ++R+++ T +S L ++ G F+H+ LDEA QA E E+++P+A L TK T +VL
Sbjct: 761 DILKHRVVVVTLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLA-LATKNTRIVL 819
Query: 576 AGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLP 635
AGD QL P +YS+ A L S L+RL+E + + L NYR H AI++
Sbjct: 820 AGDHMQLSPFVYSEFARERNLHVSLLDRLYE---HYPAEFPCRILLCENYRSHEAIINYT 876
Query: 636 SKLFYGGELLACKDDATSLSSAKVDIFPNKDF-PVLFFGIQGCDEREGNNPSWFNRFEVS 694
S+LFY G+L+A +KDF P+ FF +G D +E N+ +++N EV
Sbjct: 877 SELFYEGKLMASGKQPA-----------HKDFYPLTFFTARGEDVQEKNSTAFYNNAEVF 925
Query: 695 KVVDIINKLREN-----TELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQG 749
+VV+ + +LR +L++ IGV+TPY QV +I+ L + DV V V QG
Sbjct: 926 EVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVNVERVLNVQG 985
Query: 750 QEREVIIVSTVRS--TVKHNEF----------DRTYCL--GFLSNPRRFNVAITRARSLL 795
++ V+ +STVR+ T KH + D T L GFLSN + N AITRA+SL+
Sbjct: 986 KQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLV 1045
Query: 796 IIVGNPHIVC 805
+VG+P +C
Sbjct: 1046 AVVGDPVALC 1055
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 138/439 (31%), Positives = 226/439 (51%), Gaps = 61/439 (13%)
Query: 401 LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSA 460
LN Q +++ +L P +I GPPGTGKT+T I + + +S++LVCA SN A
Sbjct: 456 LNASQIAAIKQVLS---NPLSLIQGPPGTGKTVTSATIIYHL-AKMSNSQVLVCAPSNVA 511
Query: 461 ADHMLERL-----------------ISNEVAGIKENEILRLNATSRPYE---DVPTDFIR 500
D + ER+ + + V+ + +E +R+N T++ + + T+
Sbjct: 512 VDQLCERIHRTGLKVVRLTAKSREDVESSVSFLALHEQVRMNTTNKELDGLVKLKTETGE 571
Query: 501 FCFFEESIFKCPPREA----LGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASE 556
+E FK R+A L ++ T + + + +K F ++ +DE+ Q++E
Sbjct: 572 LSSQDEKRFKQLTRQAEREILQNADVVCCTCVGAGDPRLSKMK---FRNVLIDESTQSAE 628
Query: 557 PESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEG 616
PE MIP+ C + VVL GD KQLGPVI +K A GL +S ERL + +F
Sbjct: 629 PECMIPLVLGCKQ---VVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKLQFTP----- 680
Query: 617 YVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDI---FPNKDFPVLFFG 673
+L YR HP + + PS +FY G L ++ T+ + D+ +P + P++F+
Sbjct: 681 --IRLKVQYRMHPCLSEFPSNMFYEGSL---QNGVTAAERLRKDVDFPWPVPETPMMFWS 735
Query: 674 IQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLET 733
G +E + S+ NR E + V I+ + + + DIGVITPY Q I ++
Sbjct: 736 NLGNEEISASGTSYLNRTEAANVEKIVTRFFK-AGVKPADIGVITPYEGQRSYIVNTMQN 794
Query: 734 W------DMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVA 787
+V+V +V+ FQG+E++ I++S VRS + +GFLS+PRR NVA
Sbjct: 795 TGTFKKESYREVEVASVDAFQGREKDFIVLSCVRS-------NENQGIGFLSDPRRLNVA 847
Query: 788 ITRARSLLIIVGNPHIVCQ 806
+TRA+ L+I+GNP ++C+
Sbjct: 848 LTRAKYGLVIIGNPKVLCK 866
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 183 bits (464), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 214/458 (46%), Gaps = 66/458 (14%)
Query: 377 NLLFPSQSTKRRSIKAAPFVPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLV 436
+++ Q KR + + P LN Q +V+ +L P +I GPPGTGKT+T
Sbjct: 463 DVIIKCQLPKRFTAQGLP-----DLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSA 514
Query: 437 EAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPT 496
+ + + + + +LVCA SN A D + E++ G+K ++RL A SR D P
Sbjct: 515 TIVYHL-ARQGNGPVLVCAPSNIAVDQLTEKI---HQTGLK---VVRLCAKSREAIDSPV 567
Query: 497 DFIRFCFFEESIFKCPPREAL---------------GRYRIIISTYMSSSLLNTNGI--- 538
F+ ++ P + L RYR + T L+N + I
Sbjct: 568 SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT 627
Query: 539 ---------KRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSK 589
+ F I +DE+ QA+EPE M+P+ L KQ ++L GD QLGPV+ K
Sbjct: 628 CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV-LGAKQ--LILVGDHCQLGPVVMCK 684
Query: 590 DAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKD 649
A GL +S ERL +L YR HPA+ PS +FY G L
Sbjct: 685 KAAKAGLSQSLFERLVVLGIRP-------IRLQVQYRMHPALSAFPSNIFYEGSLQNGVT 737
Query: 650 DATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTEL 709
A + +P D P+ F+ QG +E + S+ NR E + V I KL +
Sbjct: 738 AADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK-AGA 796
Query: 710 NETDIGVITPYRQQ------VLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRST 763
IG+ITPY Q ++ L T +V++ +V+ FQG+E++ II+S VR+
Sbjct: 797 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 856
Query: 764 VKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNP 801
+GFL++PRR NVA+TRAR +IIVGNP
Sbjct: 857 EHQG-------IGFLNDPRRLNVALTRARYGVIIVGNP 887
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 214/458 (46%), Gaps = 66/458 (14%)
Query: 377 NLLFPSQSTKRRSIKAAPFVPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLV 436
+++ Q KR + + P LN Q +V+ +L P +I GPPGTGKT+T
Sbjct: 458 DVVIKCQLPKRFTAQGLP-----DLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSA 509
Query: 437 EAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPT 496
+ + + + + +LVCA SN A D + E++ G+K ++RL A SR D P
Sbjct: 510 TIVYHL-ARQGNGPVLVCAPSNIAVDQLTEKI---HQTGLK---VVRLCAKSREAIDSPV 562
Query: 497 DFIRFCFFEESIFKCPPREAL---------------GRYRIIISTYMSSSLLNTNGI--- 538
F+ ++ P + L RYR + T L+N + I
Sbjct: 563 SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT 622
Query: 539 ---------KRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSK 589
+ F I +DE+ QA+EPE M+P+ L KQ ++L GD QLGPV+ K
Sbjct: 623 CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV-LGAKQ--LILVGDHCQLGPVVMCK 679
Query: 590 DAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKD 649
A GL +S ERL +L YR HPA+ PS +FY G L
Sbjct: 680 KAAKAGLSQSLFERLVVLGIRP-------IRLQVQYRMHPALSAFPSNIFYEGSLQNGVT 732
Query: 650 DATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTEL 709
A + +P D P+ F+ QG +E + S+ NR E + V I KL +
Sbjct: 733 AADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLK-AGA 791
Query: 710 NETDIGVITPYRQQ------VLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRST 763
IG+ITPY Q ++ L T +V++ +V+ FQG+E++ II+S VR+
Sbjct: 792 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRAN 851
Query: 764 VKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNP 801
+GFL++PRR NVA+TRAR +IIVGNP
Sbjct: 852 EHQG-------IGFLNDPRRLNVALTRARYGVIIVGNP 882
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 216/451 (47%), Gaps = 70/451 (15%)
Query: 392 AAPFVPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRI 451
+AP +P LN Q +V+ L P +I GPPGTGKT+T + Q+ + +
Sbjct: 445 SAPHLP--DLNRSQVYAVKHALQ---RPLSLIQGPPGTGKTVTSATIVYQLVKLHGGT-V 498
Query: 452 LVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFI------------ 499
LVCA SN+A D + E++ + +++R+ A SR D P F+
Sbjct: 499 LVCAPSNTAVDQLTEKIHRTNL------KVVRVCAKSREAIDSPVSFLALHNQIRNMETN 552
Query: 500 --------------RFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNG-IKRGNFS 544
+E ++ R A + + + +G + R F+
Sbjct: 553 SELKKLQQLKDETGELSSADEKRYRNLKRAAENQLLEAADVICCTCVGAGDGRLSRVKFT 612
Query: 545 HIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERL 604
I +DE+ Q++EPE M+P+ L KQ ++L GD QLGPV+ K A GL +S ERL
Sbjct: 613 SILIDESMQSTEPECMVPVV-LGAKQ--LILVGDHCQLGPVVMCKKAARAGLSQSLFERL 669
Query: 605 FECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELL--ACKDDATSLSSAKVDI- 661
G + +L YR HP + PS FY G L C +D K+D
Sbjct: 670 VVL-----GIRPF--RLEVQYRMHPELSQFPSNFFYEGSLQNGVCAED----RRLKLDFP 718
Query: 662 FPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYR 721
+P + P+ F QG +E G+ S+ NR E + V I + + + IG+ITPY
Sbjct: 719 WPQPERPMFFLVTQGQEEIAGSGTSFLNRTEAANVEKITTRFLK-AGIKPEQIGIITPYE 777
Query: 722 QQ------VLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCL 775
Q ++ + L + ++++ +V+ FQG+E+++II+S VRS + +
Sbjct: 778 GQRAYLVQYMQYQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQG-------I 830
Query: 776 GFLSNPRRFNVAITRARSLLIIVGNPHIVCQ 806
GFL++PRR NVA+TRA+ +IIVGNP ++ +
Sbjct: 831 GFLNDPRRLNVALTRAKFGIIIVGNPKVLAK 861
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 151/479 (31%), Positives = 230/479 (48%), Gaps = 81/479 (16%)
Query: 371 AENLEPNLLFPSQSTKRRSIKAAPFVPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTG 430
++ P+ L P K S + P +P LN Q+ +V +L P +I GPPGTG
Sbjct: 369 GHDIPPSFLKP----KLPSDLSVPNLP--KLNASQSEAVRAVLS---KPLSLIQGPPGTG 419
Query: 431 KTMTLVE-----AILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLN 485
KT+T A +Q + HS +LVCA SN A D + E++ G++ ++R+
Sbjct: 420 KTVTSASVVYHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKI---HRTGLR---VVRVA 473
Query: 486 ATSRPYEDVPTDFIRFCFFEESI--FKCPPR----------------EALGRYRIIISTY 527
A SR ED+ + + F E I +K P + + RI+++
Sbjct: 474 AKSR--EDIESS-VSFLSLHEQIKNYKFNPELQRLLKLRSENNELSIQDEKKLRILVAAA 530
Query: 528 MSSSLLNTN------------GIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVL 575
L + I + F + +DEA QASEPE MIP+ L KQ VVL
Sbjct: 531 EKELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLV-LGAKQ--VVL 587
Query: 576 AGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLP 635
GD +QLGPV+ +K L +S ERL G+ + +LV YR HP + + P
Sbjct: 588 VGDHQQLGPVVMNKKVALASLSQSLFERLIIL-----GNSPF--RLVVQYRMHPCLSEFP 640
Query: 636 SKLFYGGELLACKDDATSLSSAKVDIFP--NKDFPVLFFGIQGCDEREGNNPSWFNRFEV 693
S FY G L TS A+ FP D P++F+ G +E + S+ NR E
Sbjct: 641 SNTFYEGTLQ--NGVTTSERIARHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEA 698
Query: 694 SKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLET-----WDM-PDVKVGTVEQF 747
S I+ + L E IG++TPY Q I + ++ D+ V+V +V+ F
Sbjct: 699 STCEKIVTTFLRSNVLPE-QIGIVTPYDGQRSYIVQYMQNNGSMQKDLYKAVEVASVDAF 757
Query: 748 QGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIVCQ 806
QG+E++ II+S VRS+ +GF+++PRR NVA+TRA+ +I++GNP ++ +
Sbjct: 758 QGREKDFIILSCVRSSEHQG-------IGFVNDPRRLNVALTRAKYGVIVLGNPKVLAK 809
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 169 bits (428), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 140/444 (31%), Positives = 207/444 (46%), Gaps = 77/444 (17%)
Query: 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457
F LN Q+ +V +L P +I GPPGTGKT+T + + S RILVCA S
Sbjct: 406 FAQLNSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL-SKIHKDRILVCAPS 461
Query: 458 NSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL 517
N A DH+ +L G+K ++RL A SR EDV + ++ R A
Sbjct: 462 NVAVDHLAAKLRD---LGLK---VVRLTAKSR--EDVESSVSNL-----ALHNLVGRGAK 508
Query: 518 GRYRIIISTYMSSSLLNTNGIKR--------------------------------GNFSH 545
G + ++ L+ + KR F
Sbjct: 509 GELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDTKFRT 568
Query: 546 IFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLF 605
+ +DE+ QASEPE +IPI + V+L GD +QLGPVI + A GL +S ERL
Sbjct: 569 VLIDESTQASEPECLIPIVKGAKQ---VILVGDHQQLGPVILERKAADAGLKQSLFERLI 625
Query: 606 ECEFYRNGDEGYV-TKLVRNYRCHPAILDLPSKLFYGGELL-ACKDDATSLSSAKVDIFP 663
G+V +L YR +P + + PS +FY G L + ++ ++K +P
Sbjct: 626 SL--------GHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFP-WP 676
Query: 664 NKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQ 723
+ P++F+ G +E N S+ NR E II KL + + IGVITPY Q
Sbjct: 677 IRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRDG-VKPEQIGVITPYEGQ 735
Query: 724 VLKIKKVLETWDMPD------VKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGF 777
I + ++ D V+V +V+ FQG+E++ II+S VR+ + +GF
Sbjct: 736 RAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQ-------AIGF 788
Query: 778 LSNPRRFNVAITRARSLLIIVGNP 801
L +PRR NV +TRA+ L+I+GNP
Sbjct: 789 LRDPRRLNVGLTRAKYGLVILGNP 812
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 166 bits (421), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 137/447 (30%), Positives = 211/447 (47%), Gaps = 75/447 (16%)
Query: 401 LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSA 460
LN Q +V+ +L P +I GPPGTGKT+T AI+ + + ++LVCA SN A
Sbjct: 489 LNASQVNAVKSVLQ---KPISLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVA 544
Query: 461 ADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCF----------------- 503
D + E++ G+K ++RL A SR P +++ +
Sbjct: 545 VDQLAEKI---SATGLK---VVRLCAKSREAVSSPVEYLTLHYQVRHLDTSEKSELHKLQ 598
Query: 504 -----------FEESIFK----CPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFL 548
+E +K RE +I T + ++ L + + F + +
Sbjct: 599 QLKDEQGELSSSDEKKYKNLKRATEREITQSADVICCTCVGAADLRLSNFR---FRQVLI 655
Query: 549 DEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECE 608
DE+ QA+EPE +IP+ L KQ VVL GD QLGPVI K A GL +S ERL
Sbjct: 656 DESTQATEPECLIPLV-LGVKQ--VVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTLG 712
Query: 609 FYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDI---FPNK 665
+L YR HPA+ + PS FY G L ++ T + I +P
Sbjct: 713 IKP-------IRLQVQYRMHPALSEFPSNSFYEGTL---QNGVTIIERQTTGIDFPWPVP 762
Query: 666 DFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVL 725
+ P+ F+ G +E + S+ NR E + V ++ ++ + + IGVITPY Q
Sbjct: 763 NRPMFFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVV-PSQIGVITPYEGQRA 821
Query: 726 KI------KKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLS 779
I L +++V +V+ FQG+E++ II+S VRS +GFL+
Sbjct: 822 YIVNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQG-------IGFLN 874
Query: 780 NPRRFNVAITRARSLLIIVGNPHIVCQ 806
+PRR NVA+TRAR ++I+GNP ++ +
Sbjct: 875 DPRRLNVALTRARYGIVILGNPKVLSK 901
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1
SV=6
Length = 2649
Score = 166 bits (421), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 138/471 (29%), Positives = 222/471 (47%), Gaps = 31/471 (6%)
Query: 349 LYNVSFTYNRINMRRMYQAVQAAENLEPNLLFPSQSTKRRSIKAAPFVPFNSLNEEQTRS 408
+ V F + + R +QAV E L+ P T + P N +Q +
Sbjct: 466 VLEVQFQIDPMTFRLWHQAVDTLP--EEQLVVPDLPTCALP-RPWSVPPLRRGNRKQELA 522
Query: 409 VEIILGC-----KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAAD- 462
V +I G + PP +IYGP GTGKT TL A L+V R +++L+C +NSAAD
Sbjct: 523 VALIAGWGPGDGRRVPPLLIYGPFGTGKTYTLAMASLEVIR-RPETKVLICTHTNSAADI 581
Query: 463 HMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFF--EESIFKCPPREALGRY 520
++ E S+ G E LR+ T RP +++C + F+ P R L R+
Sbjct: 582 YIREYFHSHVSGGHPEATPLRVMYTDRPLSQTDPVTLQYCCLTDDRQAFRPPTRAELARH 641
Query: 521 RIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPK 580
R++++T + L + G FSHI +DEA Q E E++ P+A + T +VLAGD
Sbjct: 642 RVVVTTTSQARELR---VPVGFFSHILIDEAAQMLECEALTPLA-YASHGTRLVLAGDHM 697
Query: 581 QLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLV--RNYRCHPAILDLPSKL 638
Q+ P ++S A + L RLF C + ++LV NYRC AI+ S+
Sbjct: 698 QVTPRLFSV-ARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISRH 756
Query: 639 FYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVD 698
FY K + + KV P + +P++F + G +R+ + SW N E+++VV+
Sbjct: 757 FY-----VAKGNPIH-ARGKVPPHP-RHYPLMFCHVAGSPDRDMSMASWLNLAEIAQVVE 809
Query: 699 II----NKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREV 754
+ N E + + QV +++ L D+ V VG+ E G++ V
Sbjct: 810 KVQEAYNTWPSCWGGREQRCICVVSHGAQVSALRQELRRRDLGQVSVGSFEILPGRQFRV 869
Query: 755 IIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIVC 805
+++STV T + F ++ R N +TRA+S L++VG+ +C
Sbjct: 870 VVLSTVH-TCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALC 919
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 142/550 (25%), Positives = 221/550 (40%), Gaps = 117/550 (21%)
Query: 345 RNGSLYNVSFTYNRINMRRMYQAVQAAENLEPNL---------------LFPSQSTKRRS 389
R G+L+ V ++ R +AV+ E P + + PS+ +R++
Sbjct: 2084 RPGTLFTVELLPKQLPDLRKEEAVRGLEEASPLVTSIALGRPVPQPLCRVIPSRFLERQT 2143
Query: 390 IKAAPFVPF--NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE 447
+P + LN Q +V L P VI GPPGTGKT+ + + + + +
Sbjct: 2144 YN----IPGGRHKLNPSQNVAVREALE---KPFTVIQGPPGTGKTIVGLHIVFWFHKSNQ 2196
Query: 448 HSR----------------ILVCAASNSAAD----HMLERL------ISNEVAGIKENEI 481
IL C SN + D +L R+ + +E A E +
Sbjct: 2197 EQVQPGGPPRGEKRLGGPCILYCGPSNKSVDVLAGLLLRRMELKPLRVYSEQAEASEFPV 2256
Query: 482 LRLNATS----RPYEDVPTDFIRFCFFEESIFKCP--------------------PREAL 517
R+ + P E P +R I + P RE L
Sbjct: 2257 PRVGSRKLLRKSPREGRPNQSLRSITLHHRIRQAPNPYSSEIKAFDTRLQRGELFSREDL 2316
Query: 518 GRYRIIIS------------TYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIAN 565
Y+ ++ + S + +K + I +DEAG A+EPE++IP+
Sbjct: 2317 VWYKKVLWEARKFELDRHEVILCTCSCAASASLKILDVRQILVDEAGMATEPETLIPLVQ 2376
Query: 566 LCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNY 625
+ VV+L GD KQL PV+ ++ + GL +S ER E L Y
Sbjct: 2377 FPQAEKVVLL-GDHKQLRPVVKNERLQNLGLDRSLFERYHE----------DAHMLDTQY 2425
Query: 626 RCHPAILDLPSKLFYGGEL---LACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDER-- 680
R H I PS FY +L + + L A + PV+F +QG +
Sbjct: 2426 RMHEGICAFPSVAFYKSKLKTWQGLRRPPSVLGHAG-----KESCPVIFGHVQGHERSLL 2480
Query: 681 ----EGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDM 736
EGN S N EV++VV I +L + DI V+TPY Q +I K L +
Sbjct: 2481 VSTDEGNENSKANLEEVAEVVRITKQLTLGRTVEPQDIAVLTPYNAQASEISKALRREGI 2540
Query: 737 PDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDR------TYCLGFLSNPRRFNVAITR 790
V V ++ + QG E ++VSTVR+ K + R LGF+ +P + NVA+TR
Sbjct: 2541 AGVAVSSITKSQGSEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTR 2600
Query: 791 ARSLLIIVGN 800
A+ L ++G+
Sbjct: 2601 AQEGLCLIGD 2610
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 142/448 (31%), Positives = 213/448 (47%), Gaps = 76/448 (16%)
Query: 401 LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQ-VYSTREHSRILVCAASNS 459
LNE Q +V +L AP +I GPPGTGKT+ I V + + ++LVC SN
Sbjct: 537 LNESQISAVNKVLT---APLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCTPSNV 593
Query: 460 AADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPP------ 513
A D + +L +E+ G+K ++RL++ R P + + + ++K
Sbjct: 594 AIDQLTGKL--HEI-GLK---VVRLSSKLREEVASPVEHLTL---HKQVYKLDQMGDGEL 644
Query: 514 ------REALG--------RYRIIISTYMSSSLLNTNGI-------------KRGNFSHI 546
+EA G RY I + M ++L + + F HI
Sbjct: 645 GKLRKLKEAFGSLSNEDEKRY-IYLRRMMEMAILRKADVICATCVGAGDPRLSQFRFPHI 703
Query: 547 FLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFE 606
+DE+ QASEPE +IP+ + KQ V+L GD +QLGPV+ K GL +S ERL
Sbjct: 704 LIDESTQASEPECLIPLM-MGAKQ--VILVGDHRQLGPVLLCKKVVDAGLSQSLFERLIS 760
Query: 607 CEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKD 666
+ +L YR HP++ + PS Y G+L++ S +K +P
Sbjct: 761 LGHHPE-------RLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFP-WPQPK 812
Query: 667 FPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLK 726
P+ FF G +E + S+ N E S I+ K E L IG+ITPY Q
Sbjct: 813 DPMFFFNCTGSEEISSSGTSFINTTEASICEKIVTKFLELGSL-PGQIGIITPYEGQRAY 871
Query: 727 I--------KKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFL 778
I K LE + ++V +V+ FQG+E++ II+S VRS N++ +GFL
Sbjct: 872 ITSHMQKSGKLNLELYK--SIEVASVDSFQGREKDYIILSCVRS----NDYQ---GIGFL 922
Query: 779 SNPRRFNVAITRARSLLIIVGNPHIVCQ 806
+PRR NVA+TRAR LII+GN ++ +
Sbjct: 923 QDPRRLNVALTRARFGLIILGNAKVLSK 950
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/440 (29%), Positives = 214/440 (48%), Gaps = 69/440 (15%)
Query: 422 VIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERL------------- 468
+I+GPPGTGKT TL+E I Q+ RIL+C SN + D +LERL
Sbjct: 226 IIHGPPGTGKTFTLIELIQQLLIKNPEERILICGPSNISVDTILERLTPLVPNNLLLRIG 285
Query: 469 ----------------ISNEVAGIKE-----NEILRLNATSRPYEDVPTDFIRFCFFEES 507
+S + +K+ +++++ N + Y+ ++ +
Sbjct: 286 HPARLLDSNKRHSLDILSKKNTIVKDISQEIDKLIQENKKLKNYKQRKENWNEIKLLRKD 345
Query: 508 IFK---CPPREALGRYRIIISTYMSSSLLNTNGIKRGN-----FSHIFLDEAGQASEPES 559
+ K ++ + + RI+++T SS + R + F + +DE QA EP+
Sbjct: 346 LKKREFKTIKDLIIQSRIVVTTLHGSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQC 405
Query: 560 MIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETF--GLGKSYLERLFECEFYRNGDEGY 617
IP+ + +VLAGD KQL P I ++D + L + +R+ + R+
Sbjct: 406 WIPLIAHQNQFHKLVLAGDNKQLPPTIKTEDDKNVIHNLETTLFDRIIKIFPKRD----M 461
Query: 618 VTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSL--SSAKVDIFPNKD-----FPVL 670
V L YR + I++ PS Y G+LLA A L VD P++D P++
Sbjct: 462 VKFLNVQYRMNQKIMEFPSHSMYNGKLLADATVANRLLIDLPTVDATPSEDDDDTKIPLI 521
Query: 671 FFGIQGCDEREGNNP-----SWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVL 725
++ QG + +E + S +N E++ V + I LR + + E IGVI+PY QV
Sbjct: 522 WYDTQGDEFQETADEATILGSKYNEGEIAIVKEHIENLR-SFNVPENSIGVISPYNAQVS 580
Query: 726 KIKKVL-ETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRF 784
+KK++ + + D+++ TV+ FQG+E++VII+S VRS K + +GFL RR
Sbjct: 581 HLKKLIHDELKLTDIEISTVDGFQGREKDVIILSLVRSNEK-------FEVGFLKEERRL 633
Query: 785 NVAITRARSLLIIVGNPHIV 804
NVA+TR R L++VGN ++
Sbjct: 634 NVAMTRPRRQLVVVGNIEVL 653
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/509 (27%), Positives = 228/509 (44%), Gaps = 87/509 (17%)
Query: 349 LYNVSFTYNRINMRRMYQAVQAAEN----LEPNLL-----FPSQST-------KRRSIKA 392
++ V +N R Y+A+ A N + P L P++ +R S+
Sbjct: 383 MFTVDVVWNATTFERQYKALAALLNDSKAISPYLYQKLLGHPAEEMMLKFDLPRRLSVAG 442
Query: 393 APFVPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRIL 452
P LN Q ++V+ +L P +I GPPGTGKT+ + + E +L
Sbjct: 443 LP-----ELNSSQMQAVKQVLT---RPLSLIQGPPGTGKTVVSATIVYHLVQKTE-GNVL 493
Query: 453 VCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCF--------- 503
VC+ SN A DH+ E++ G+K ++RL A SR + + ++
Sbjct: 494 VCSPSNIAVDHLAEKI---HKTGLK---VVRLCARSREHSETTVPYLTLQHQLKVMGGAE 547
Query: 504 ---------------FEESIF-----KCPPREALGRYRIIISTYMSSSLLNTNGIKRGNF 543
F++ + + E L +I T S++ + I+
Sbjct: 548 LQKLIQLKDEAGELEFKDDLRYMQLKRVKEHELLAAADVICCTCSSAADARLSKIRTRT- 606
Query: 544 SHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLER 603
+ +DE+ QA+EPE ++ I + +VL GD QLGPV+ K A GL +S ER
Sbjct: 607 --VLIDESTQATEPEILVSIMRGVRQ---LVLVGDHCQLGPVVICKKAAIAGLSQSLFER 661
Query: 604 LFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFP 663
L G + +L YR HP + + PS +FY G L + + +P
Sbjct: 662 LVLL-----GIRPF--RLQVQYRMHPVLSEFPSNVFYDGSLQNGVTENDRHMTGVDWHWP 714
Query: 664 NKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQ 723
+ P F+ G +E + S+ NR E + V +++KL + + IGVIT Y Q
Sbjct: 715 KPNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIK-AGVQPHQIGVITSYEGQ 773
Query: 724 ------VLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGF 777
+ + L + +V++ +V+ FQG+E++ IIV+ VRS + +GF
Sbjct: 774 RSFIVNYMHTQGTLNSKLYENVEIASVDAFQGREKDYIIVTCVRS-------NDILGIGF 826
Query: 778 LSNPRRFNVAITRARSLLIIVGNPHIVCQ 806
LS+PRR NVAITRA+ L++VGN ++ +
Sbjct: 827 LSDPRRLNVAITRAKYGLVLVGNAKVLAR 855
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 198/434 (45%), Gaps = 63/434 (14%)
Query: 401 LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSA 460
LN Q +V+ +L P +I GPPGTGKT+T + + S + + +LVCA SN A
Sbjct: 453 LNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHL-SRQGNGPVLVCAPSNIA 508
Query: 461 ADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL--- 517
D + E++ + G+K ++RL A SR + P F+ ++ P + L
Sbjct: 509 VDQLTEKI---DKTGLK---VVRLCAKSREAIESPVSFLALHNQISNMDSMPELQKLQQL 562
Query: 518 ------------GRYRIIISTYMSSSLLNTNGI------------KRGNFSHIFLDEAGQ 553
RYR + T L+N + I + F I +DE+ Q
Sbjct: 563 KDETGELSSADEKRYRALKRTAERELLMNADVIWCTCVRAGDPRLAKMQFRSILIDESTQ 622
Query: 554 ASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNG 613
A+EP+ + P+ L KQ ++ G+ + K A GL +S ERL
Sbjct: 623 ATEPKCIGPV-ELGAKQLIL---GEITASWSCVMCKKAAKAGLSQSLFERLVVLGIR--- 675
Query: 614 DEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFG 673
+L YR HPA+ PS +FY G L + +P + P+ F+
Sbjct: 676 ----PIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYV 731
Query: 674 IQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQ------VLKI 727
QG +E + S+ NR E + V I +L + IG+ITPY Q ++
Sbjct: 732 TQGQEEIASSGTSYLNRTEAANVEKITTRLLK-AGAKPDQIGIITPYEGQRSYLVQYMQF 790
Query: 728 KKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVA 787
L T + V++ +V+ FQG+E++ II+S VR+ +GFL++PRR NVA
Sbjct: 791 SGSLHT-KLYQVEIASVDAFQGREKDFIILSCVRANEHQG-------IGFLNDPRRLNVA 842
Query: 788 ITRARSLLIIVGNP 801
+TRA+ +IIVGNP
Sbjct: 843 LTRAKYGVIIVGNP 856
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 138/491 (28%), Positives = 220/491 (44%), Gaps = 120/491 (24%)
Query: 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA---- 455
+LNE Q +V+ + + Y+I+GPPGTGKT T+ E I+Q +H ++L A
Sbjct: 184 NLNESQKLAVKKAVLSRDL--YLIHGPPGTGKTRTITEVIVQEVKFNKH-KVLATADSNI 240
Query: 456 --------------------------ASNSAADHMLERLISN-----EVAGIKEN----- 479
S H L LI N E+ ++E
Sbjct: 241 AADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEILALREKIKEIK 300
Query: 480 --------------------EILRLNATSRPYEDVPTDFI--------------RFCFFE 505
+IL++ + Y +P + I R
Sbjct: 301 EQRDKFLKPSPRWRRGMSDEQILKVAKRKKSYRGIPKEKIVSMAEWIIRNKKIKRIINNL 360
Query: 506 ESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIAN 565
+ I + E L +I++T +S+ + +K F I +DE QA EP +IPI
Sbjct: 361 DEITEKIMNEILAEADVIVAT---NSMAGSEILKGWEFDVIVIDEGSQAMEPSCLIPI-- 415
Query: 566 LCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFEC--EFYRNGDEGYVTKLVR 623
K +++AGD KQL P + S++ E L K+ ERL + EF + L
Sbjct: 416 --VKGRKLIMAGDHKQLPPTVLSENEE---LKKTLFERLIKKYPEFS--------SILEI 462
Query: 624 NYRCHPAILDLPSKLFYGGELLACKD--DATSLSSAK------VDIFPNKDFPVLFFGIQ 675
YR + I++ P+K+FY +L A + + T L K VD + PV F ++
Sbjct: 463 QYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFINVE 522
Query: 676 GCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWD 735
G + ++ +PS++N E KV++I+ KL + + VITPY QV ++++ E +
Sbjct: 523 GIERKDKESPSYYNIEEAEKVLEIVKKLVKY----KIPTNVITPYDAQVRYLRRLFEEHN 578
Query: 736 MPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLL 795
+ D++V TV+ FQG+E E I++S F RT GFL + RR NVAITRA+ L
Sbjct: 579 I-DIEVNTVDGFQGRENEAIVIS----------FVRTKNFGFLKDLRRLNVAITRAKRKL 627
Query: 796 IIVGNPHIVCQ 806
I++GN +++ Q
Sbjct: 628 ILIGNENLLKQ 638
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 157/565 (27%), Positives = 244/565 (43%), Gaps = 91/565 (16%)
Query: 301 SLVHGDFVFVKLAAANADAKKGSIYRVEADEVILKF--AKEFHTQHRNGSLYNVSFTYNR 358
S GD V + A ++ G + R+ V + F + +F + Y + N
Sbjct: 82 SFTSGDIVGLYDANESSQLATGVLTRITQKSVTVAFDESHDFQLNLDRENTYRLLKLAND 141
Query: 359 INMRRMYQAVQA--------AENLEPNLLFPSQSTKRRSIKAAPFVPFNS-LNEEQTRSV 409
+ +R+ +A+ A +L LL S + I PF +N+ L+ Q +V
Sbjct: 142 VTYKRLKKALMTLKKYHSGPASSLIDVLLGGSSPSPTTEI--PPFTFYNTALDPSQKEAV 199
Query: 410 EIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469
L K +I+GPPGTGKT T+VE ILQ + ++ +IL CA SN A D+++ERL
Sbjct: 200 SFALAQKEV--AIIHGPPGTGKTTTVVEIILQ--AVKQGLKILCCAPSNVAVDNLVERL- 254
Query: 470 SNEVAGIKENEILRLNATSRPYE-------------------------DVPTDFIRFCFF 504
+ + ILRL +R E D+ F +
Sbjct: 255 -----ALCKKRILRLGHPARLLESAQQHSLDAVLARSDNAQIVADIRKDIDQVFGKNKKT 309
Query: 505 EESIFKCPPREALGRYR----------IIISTYMSSSLLNTNG----------IKRGNFS 544
++ K R + R I+ S + +L TN + +F
Sbjct: 310 QDKREKSNFRNEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPENHFD 369
Query: 545 HIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERL 604
+ +DE QA E IP+ K +LAGD +QL P S A GL +S +ERL
Sbjct: 370 VVVVDECAQALEASCWIPL----LKAPKCILAGDHRQLPPTTISHKAALAGLSRSLMERL 425
Query: 605 FECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPN 664
E ++G G V L YR H AI S+ Y G+L A A L +
Sbjct: 426 VE----KHG-AGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADT 480
Query: 665 KD--FPVLFFGIQGC---DEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITP 719
++ P+L GC + E ++ S N EV V I L + ++ DI VI P
Sbjct: 481 EETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVRLVTLHIQAL-VDAGVHAGDIAVIAP 539
Query: 720 YRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLS 779
Y QV +++ L P++++ +V+ FQG+E+E +I++ VRS +R +GFL+
Sbjct: 540 YNLQVDLLRQSLSN-KHPELEIKSVDGFQGREKEAVILTFVRS-------NRKGEVGFLA 591
Query: 780 NPRRFNVAITRARSLLIIVGNPHIV 804
RR NVA+TRAR + ++ + V
Sbjct: 592 EDRRINVAVTRARRHVAVICDSRTV 616
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 153/565 (27%), Positives = 243/565 (43%), Gaps = 91/565 (16%)
Query: 301 SLVHGDFVFVKLAAANADAKKGSIYRVEADEVILKFAKEFHTQHRN---GSLYNVSFTYN 357
S GD V + N+ G + R+ V + F E H N + Y + N
Sbjct: 82 SFTSGDIVGLYDTNENSQLATGVLTRITQKSVTVAF-DESHDLQLNLDRENTYRLLKLAN 140
Query: 358 RINMRRMYQAVQAAENLEP-------NLLFPSQSTKRRSIKAAPFVPFNS-LNEEQTRSV 409
+ +R+ +A+ + ++L S ST +++ P +N+ L+ Q +V
Sbjct: 141 DVTYKRLKKALMTLKKYHSGPASSLIDILLGS-STPSPAMEIPPLSFYNTTLDLSQKEAV 199
Query: 410 EIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469
L K +I+GPPGTGKT T+VE ILQ + ++ ++L CA SN A D+++ERL
Sbjct: 200 SFALAQKELA--IIHGPPGTGKTTTVVEIILQ--AVKQGLKVLCCAPSNIAVDNLVERL- 254
Query: 470 SNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFE--------------ESIF----KC 511
+ + ILRL +R E V + + +F K
Sbjct: 255 -----ALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRDIDQVFGKNKKT 309
Query: 512 PPREALGRYR-----------------IIISTYMSSSLLNTNGIKRGN----------FS 544
+ G +R I+ S + +L TN + F
Sbjct: 310 QDKREKGNFRSEIKLLRKELKEREEAAIVQSLTAADVVLATNTGASSDGPLKLLPEDYFD 369
Query: 545 HIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERL 604
+ +DE QA E IP+ K +LAGD +QL P S A GL +S +ERL
Sbjct: 370 VVVVDECAQALEASCWIPL----LKAPKCILAGDHRQLPPTTVSHRAALAGLSRSLMERL 425
Query: 605 FECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPN 664
E ++G G V L YR H AI+ S+ Y G+ + A L +
Sbjct: 426 AE----KHG-AGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDT 480
Query: 665 KD--FPVLFFGIQGC---DEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITP 719
++ P+L GC + E ++ S N EV V I L + + DI VI P
Sbjct: 481 EETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQAL-VDAGVQAGDIAVIAP 539
Query: 720 YRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLS 779
Y QV +++ L P++++ +V+ FQG+E+E ++++ VRS +R +GFL+
Sbjct: 540 YNLQVDLLRQSLSN-KHPELEIKSVDGFQGREKEAVLLTFVRS-------NRKGEVGFLA 591
Query: 780 NPRRFNVAITRARSLLIIVGNPHIV 804
RR NVA+TRAR + ++ + H V
Sbjct: 592 EDRRINVAVTRARRHVAVICDSHTV 616
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 135/465 (29%), Positives = 208/465 (44%), Gaps = 85/465 (18%)
Query: 394 PFVPFNS-LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRIL 452
P +N+ L+ Q +V L K +I+GPPGTGKT T+VE ILQ + ++ ++L
Sbjct: 183 PLTFYNTTLDPSQKEAVSFALAQKEVA--IIHGPPGTGKTTTVVEIILQ--AVKQGLKVL 238
Query: 453 VCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFF-------- 504
CA SN A D+++ERL + + +ILRL +R E V +
Sbjct: 239 CCAPSNIAVDNLVERL------ALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIV 292
Query: 505 ---------------------EESIFKCPPR---------------EALGRYRIIISTYM 528
E+S F+ + ++L ++++T
Sbjct: 293 ADIRRDIDQVFGKNKKTQDKREKSNFRNEIKLLRKELKEREEAAIVQSLSAADVVLATNT 352
Query: 529 SSSLLNTNG----IKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGP 584
+S T+G + F + +DE QA E IP+ K +LAGD KQL P
Sbjct: 353 GAS---TDGPLKLLPEDYFDVVVVDECAQALEASCWIPL----LKAPKCILAGDHKQLPP 405
Query: 585 VIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGEL 644
S A GL +S +ERL E ++G V L YR H AI S+ Y G+L
Sbjct: 406 TTVSHKAALAGLSRSLMERLAE----KHG-AAVVRMLAVQYRMHQAITRWASEAMYHGQL 460
Query: 645 LACKDDATSLSSAKVDIFPNKD--FPVLFFGIQGC---DEREGNNPSWFNRFEVSKVVDI 699
A A L + ++ P+L GC + E ++ S N EV V
Sbjct: 461 TAHPSVAGHLLKDLPGVADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLH 520
Query: 700 INKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVST 759
I L + + DI VI PY QV +++ L P++++ +V+ FQG+E+E +I++
Sbjct: 521 IQAL-VDAGVQAGDIAVIAPYNLQVDLLRQSLSN-KHPELEIKSVDGFQGREKEAVILTF 578
Query: 760 VRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
VRS +R +GFL+ RR NVA+TRAR + ++ + H V
Sbjct: 579 VRS-------NRKGEVGFLAEDRRINVAVTRARRHVAVICDSHTV 616
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 180/384 (46%), Gaps = 56/384 (14%)
Query: 450 RILVCAASNSAADHMLERLISN---EVAGIKEN-EILRLNATSRP-YEDVPTDFIRFC-- 502
RIL+CA SN A D ++ RLI + G K N ++R+ S E V D++ C
Sbjct: 463 RILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLVRVGPGSHSDVESVSLDYMVRCRQ 522
Query: 503 ----------------------FFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKR 540
+ R + I++T +S S +
Sbjct: 523 QLMNSNSAIPSSSASTAAATSGSSRSTQDTSSIRTLVLDEADIVATTLSFSGASLLTKMA 582
Query: 541 GNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSY 600
G F + +DEA QA E ++IPI + C K VVL GDPKQL I S A + +S
Sbjct: 583 GGFDIVIIDEAAQAVETSTLIPIQHGCKK---VVLVGDPKQLPATIISPLAIKYKYDQSL 639
Query: 601 LERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVD 660
+RL E +N T+ YR H I PS+ FY LL D ++ S
Sbjct: 640 FQRLQE----KNSPHMLTTQ----YRMHSLIRAFPSRHFYQDLLL----DGPNIPSRATH 687
Query: 661 IFPNKDF-PVLFFGIQGCDEREGNNPSWFNRFEVSKVV---DIINKLRENTELNETDIGV 716
N F P++F+ + E + S FN E + + K+ + + + IG+
Sbjct: 688 YHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECKMAMYLFQLFTKVYPDEDF-ASRIGI 746
Query: 717 ITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLG 776
I+PYRQQVL ++++ + + P + + TV+ FQG+ERE+II S VR+ V+ +G
Sbjct: 747 ISPYRQQVLALREIFKNY--PGISIDTVDGFQGREREIIIFSCVRAPVEEGA-----GIG 799
Query: 777 FLSNPRRFNVAITRARSLLIIVGN 800
FLS+ RR NVA+TR RS L+I+GN
Sbjct: 800 FLSDVRRMNVALTRPRSSLLILGN 823
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 414 GCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRIL--VCAASNSAADHMLE 466
+G +I GPPGTGKT IL + S HS I+ V + N+ DH+L+
Sbjct: 346 ALEGNAITLIQGPPGTGKT----HVILGLISVLLHSTIVPKVKSGGNNLGDHLLK 396
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 214/458 (46%), Gaps = 83/458 (18%)
Query: 398 FNS-LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456
FN LN Q ++V+ + K +I+GPPGTGKT TLVE I Q+ + RILVC A
Sbjct: 206 FNKELNASQKKAVKFSIAVKELS--LIHGPPGTGKTHTLVEIIQQL--VLRNKRILVCGA 261
Query: 457 SNSAADHMLERLISNEVAGIKENEILRL---------NATSRPYEDVPTDFIR------- 500
SN A D++++RL S+ + ++ RL + SR ++ D IR
Sbjct: 262 SNLAVDNIVDRLSSSGIPMVRLGHPARLLPSILDHSLDVLSRTGDN--GDVIRGISEDID 319
Query: 501 FCFFE----------ESIFKCPPREALGRYR---------IIISTYMSSSLLNTNG---I 538
C + I+K RE YR I+ ++ + L+ G +
Sbjct: 320 VCLSKITKTKNGRERREIYK-NIRELRKDYRKYEAKTVANIVSASKVVFCTLHGAGSRQL 378
Query: 539 KRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGK 598
K F + +DEA QA EP+ IP+ + V+LAGD QL P + SK
Sbjct: 379 KGQRFDAVIIDEASQALEPQCWIPLLGMNK----VILAGDHMQLSPNVQSKRPYI----- 429
Query: 599 SYLERLFECEFYRNGDEGYVTKLVRN--YRCHPAILDLPSKLFYGGELLACKDDATSL-- 654
S ERL + + G + K N YR H I PS FY +L+ ++ L
Sbjct: 430 SMFERLVKSQ-------GDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLM 482
Query: 655 SSAKVDIFPNKDFPVLFFGIQGC---DEREGNNPSWF-----NRFEVSKVVDIINKLREN 706
V+ D P+ F+ G D+R + +++ N +E V I+ L E
Sbjct: 483 DLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLE- 541
Query: 707 TELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKH 766
L DI V+TPY QV I+++L+ + +V++G+V++ QG+E+E II S VRS
Sbjct: 542 AGLEAKDIAVVTPYNAQVALIRQLLKEKGI-EVEMGSVDKVQGREKEAIIFSLVRS---- 596
Query: 767 NEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
+ +GFL+ RR NVAITR + L ++G+ + V
Sbjct: 597 ---NDVREVGFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 156/572 (27%), Positives = 236/572 (41%), Gaps = 104/572 (18%)
Query: 301 SLVHGDFVFVKLAA-ANADAKKGSIYRVEADEVILKF--AKEFHTQHRNGSLYNVSFTYN 357
S GD V + AA + G + RV V + F + +F + Y + N
Sbjct: 82 SFTSGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLAN 141
Query: 358 RINMRRMYQAVQAAENLEPN-------LLFPSQSTKRRSIKAAPFVPFNS-LNEEQTRSV 409
+ RR+ +A+ A + +LF +S + + P FN+ L+ Q +V
Sbjct: 142 DVTYRRLKKALIALKKYHSGPASSLIEVLF-GRSAPSPASEIHPLTFFNTCLDTSQKEAV 200
Query: 410 EIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469
L K +I+GPPGTGKT T+VE ILQ + ++ ++L CA SN A D+++ERL
Sbjct: 201 LFALSQKELA--IIHGPPGTGKTTTVVEIILQ--AVKQGLKVLCCAPSNIAVDNLVERL- 255
Query: 470 SNEVAGIKENEILRLNATSRPYE-------------------------DVPTDFIRFCFF 504
+ + ILRL +R E D+ F++
Sbjct: 256 -----ALCKQRILRLGHPARLLESIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKKT 310
Query: 505 EESIFKCPPREALGRYRIIIS----TYMSSSLLNTNGIKRGN----------------FS 544
++ K R + R + M SL + N + N F
Sbjct: 311 QDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFD 370
Query: 545 HIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERL 604
+ +DE QA E IP+ K +LAGD KQL P S A GL S +ERL
Sbjct: 371 VVVIDECAQALEASCWIPL----LKARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERL 426
Query: 605 FECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPN 664
E R V L YR H AI+ S Y G+L A A L +
Sbjct: 427 AEEYGAR-----VVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAAT 481
Query: 665 KD--FPVLFFGIQGC--------DEREGNNPSWFN--RFEVSKVVDIINKLRENTELNET 712
++ P+L GC DE+ NP + +VD R
Sbjct: 482 EETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPAR-------- 533
Query: 713 DIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRT 772
DI V++PY QV +++ L P++++ +V+ FQG+E+E +I+S VRS +R
Sbjct: 534 DIAVVSPYNLQVDLLRQSL-VHRHPELEIKSVDGFQGREKEAVILSFVRS-------NRK 585
Query: 773 YCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
+GFL+ RR NVA+TRAR + ++ + V
Sbjct: 586 GEVGFLAEDRRINVAVTRARRHVAVICDSRTV 617
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 128/392 (32%), Positives = 187/392 (47%), Gaps = 78/392 (19%)
Query: 450 RILVCAASNSAADHMLERLIS-----------------------NEVAGIKENEIL---R 483
R+LVCA SNSA D ++ RL+S + VA + + ++ R
Sbjct: 376 RVLVCAPSNSALDEIVLRLLSSGLRDENAQTYTPKIVRIGLKAHHSVASVSLDHLVAQKR 435
Query: 484 LNATSRPYEDVP---TDFIRFCFFEESIFKCPPREALGRYRIIIST--YMSSSLLNTNGI 538
+A +P + D IR EE+ I+ +T + S+LL +
Sbjct: 436 GSAIDKPKQGTTGTDIDSIRTAILEEAA-------------IVFATLSFSGSALLAKSN- 481
Query: 539 KRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGK 598
RG F + +DEA QA EP ++IP+A C + V L GDPKQL + S A+ G G
Sbjct: 482 -RG-FDVVIIDEAAQAVEPATLIPLATRCKQ---VFLVGDPKQLPATVISTVAQDSGYGT 536
Query: 599 SYLERLFECEFYRNGDEGYVTKLVR-NYRCHPAILDLPSKLFYGGELLACKDDATSLSSA 657
S ERL + GY K+++ YR HP I PSK FY G A +D + +
Sbjct: 537 SMFERLQKA--------GYPVKMLKTQYRMHPEIRSFPSKQFYEG---ALEDGSDIEAQT 585
Query: 658 KVDIFPNKDF-PVLFFGIQGCDERE--GNNPSWFNRFEVSKVVDIINKL-RENTEL-NET 712
D + F P FF I E + G S N EV V+ I ++L EL + +
Sbjct: 586 TRDWHKYRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVTMYPELKSSS 645
Query: 713 DIGVITPYRQQVL----KIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNE 768
+ +I+PY QV + K++ T V + TV+ FQG+E++V I S VR+ NE
Sbjct: 646 QLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSCVRA----NE 701
Query: 769 FDRTYCLGFLSNPRRFNVAITRARSLLIIVGN 800
+ +GFLSN RR NV ITRA+S +++VG+
Sbjct: 702 NGQ---IGFLSNSRRMNVGITRAKSSVLVVGS 730
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 140/267 (52%), Gaps = 29/267 (10%)
Query: 542 NFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYL 601
NFS + +DEA QA E +++IP+ K +L GDP QL P + SK A + +S
Sbjct: 1371 NFSTVIIDEAAQAVELDTIIPLRYGAKK---CILVGDPNQLPPTVLSKKAASLNYSQSLF 1427
Query: 602 ERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDI 661
R+ + + L YR HP I PSK FY L +D +++ +
Sbjct: 1428 VRI------QKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRL----EDGDNMAEKTQQV 1477
Query: 662 FP-NKDFPVL-FFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENT-ELNETD-IGVI 717
+ N F F ++G ER N S +N EV +V+++++L ++N T IGVI
Sbjct: 1478 WHVNPKFTQYRLFDVRG-KERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVI 1536
Query: 718 TPYRQQVLKIKKVLETWD----MPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTY 773
TPYR Q+ ++++ + M + + TV+ FQGQE+++I S V+S KH
Sbjct: 1537 TPYRSQLHELRRAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHG------ 1590
Query: 774 CLGFLSNPRRFNVAITRARSLLIIVGN 800
+GFL + RR NVA+TRARS L+I+GN
Sbjct: 1591 -IGFLRDFRRLNVALTRARSSLLIIGN 1616
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 382 SQSTKRRSIKAAPFVPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLV---EA 438
SQ K S + + +NE Q +++ L G +I GPPGTGKT T++ A
Sbjct: 1111 SQPVKHSSSEIKAAMKRYQVNEPQAKAIMCALDNNGFT--LIQGPPGTGKTKTIIGIISA 1168
Query: 439 IL-------------QVYSTREHSRILVCAASNSAADHMLERL 468
+L Q ST +IL+CA SN+A D +L RL
Sbjct: 1169 LLVDLSRYHITRPNQQSKSTESKQQILLCAPSNAAVDEVLLRL 1211
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 128/427 (29%), Positives = 202/427 (47%), Gaps = 80/427 (18%)
Query: 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHS-----------RILVCAASNSAADHMLER 467
P +I+G G GK+ L IL E S ++L+ +++N A D +L
Sbjct: 470 PITIIHGVFGAGKSYLLAVVILFFVQLFEKSEAPTIGNARPWKLLISSSTNVAVDRVLLG 529
Query: 468 LISNEVAG-IKENEILRLNATSRPY---------------------EDV-PTD--FIRFC 502
L+S I+ + ++ PY ED+ PT+ ++R
Sbjct: 530 LLSLGFENFIRVGSVRKIAKPILPYSLHAGSENESEQLKELHALMKEDLTPTERVYVRKS 589
Query: 503 FFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIP 562
+ + R L + R++ T + N +K F + LDE Q +EP S++P
Sbjct: 590 IEQHKL--GTNRTLLKQVRVVGVTCAACPFPCMNDLK---FPVVVLDECSQITEPASLLP 644
Query: 563 IANL-CTKQTVVVLAGDPKQLGPVIYSKDA-ETFGLGKSYLERLFECEFYRNGDEGYVTK 620
IA C K ++L GDPKQL P I DA GL ++ +RL C G+
Sbjct: 645 IARFECEK---LILVGDPKQLPPTIQGSDAAHENGLEQTLFDRL--CLM------GHKPI 693
Query: 621 LVR-NYRCHPAILDLPSKLFYGGELLACKDDATSLS-SAKVDIFPNKDFPVLFFGIQGCD 678
L+R YRCHPAI + + LFY G L+ + T + S ++ P + F+ ++G +
Sbjct: 694 LLRTQYRCHPAISAIANDLFYKGALM---NGVTEIERSPLLEWLPT----LCFYNVKGLE 746
Query: 679 EREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDM-- 736
+ E +N S+ N E + + +I L + + + IGVIT Y+ Q+ K+ +L D
Sbjct: 747 QIERDN-SFHNVAEATFTLKLIQSLIA-SGIAGSMIGVITLYKSQMYKLCHLLSAVDFHH 804
Query: 737 PDVK---VGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARS 793
PD+K V TV+ FQG E+E+II+S V RT +GF+ + +R NVA+TR +
Sbjct: 805 PDIKTVQVSTVDAFQGAEKEIIILSCV----------RTRQVGFIDSEKRMNVALTRGKR 854
Query: 794 LLIIVGN 800
L+IVGN
Sbjct: 855 HLLIVGN 861
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 119/428 (27%), Positives = 195/428 (45%), Gaps = 61/428 (14%)
Query: 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457
LN+ Q ++++ +L K +I G PGTGKT T+ + +Y+ +L+ + +
Sbjct: 624 LRGLNKPQKQAMKRVLLSKDYT--LIVGMPGTGKTTTICTLVRILYAC--GFSVLLTSYT 679
Query: 458 NSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL 517
+SA D++L +L +V LRL T + + DV F EE I K ++L
Sbjct: 680 HSAVDNILLKLKKFQVG------FLRLGRTQKLHPDVQE------FSEEEICKAKSIKSL 727
Query: 518 GRYRIIIST--YMSSSLLNTNG--IKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVV 573
+ ++ ++++ + N R F +DEA Q S+P + P+
Sbjct: 728 SALEELYNSQPVVATTCMGVNHPIFTRRRFDFCIVDEASQISQPICLGPLFF----ADRF 783
Query: 574 VLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILD 633
VL GD +QL P++ S +A G+ +S +RL RN + V +L YR + I+
Sbjct: 784 VLVGDHQQLPPLVKSAEARELGMSESLFKRL-----ERNQEA--VVQLTVQYRMNSKIMA 836
Query: 634 LPSKLFYGGELLACKDDATSLSSAKV----------------------DIFPNKDFPVLF 671
L +KL Y G L C D S + ++ D+ + PV F
Sbjct: 837 LSNKLVYEGR-LECASDRVSNAVVQLPHIKTLLLELEFRESQESMWIKDVLEPSN-PVCF 894
Query: 672 FGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVL 731
+ E + + +K+V + KL +DIG+I PYRQQ+ I
Sbjct: 895 LNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPSDIGIIAPYRQQLKMISNYF 954
Query: 732 ETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRA 791
+ V+V TV+++QG+++ VIIVS VRS + D L + RR NVA+TRA
Sbjct: 955 NSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNIDGKLGD------LLKDWRRLNVALTRA 1008
Query: 792 RSLLIIVG 799
+ LI++G
Sbjct: 1009 KHKLIMLG 1016
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 141/275 (51%), Gaps = 35/275 (12%)
Query: 543 FSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLE 602
F + +DEA QA E S+IP+ C V+ GDP QL P + SK + FG +S
Sbjct: 1510 FRTVIIDEAAQAVELSSIIPLKYGCES---CVMVGDPNQLPPTVLSKTSAKFGYSQSLYV 1566
Query: 603 RLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIF 662
R+F + +E L YR +P I PSK FY +LL D ++S+ V
Sbjct: 1567 RMF-----KQHNESACL-LSIQYRMNPEISRFPSKFFYNSKLL----DGPNMSA--VTSR 1614
Query: 663 PNKDFPVL----FFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRE---NTELNETDIG 715
P + P L FF + G E N+ S +N E S ++ + +L + N + E IG
Sbjct: 1615 PWHEDPQLGIYRFFNVHGT-EAFSNSKSLYNVEEASFILLLYERLIQCYLNIDF-EGKIG 1672
Query: 716 VITPYRQQVLKIKKVLE----TWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDR 771
V+TPYR QV +++ + + + + TV+ FQGQE+++II S VRS++
Sbjct: 1673 VVTPYRSQVQQLRSQFQRKYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGG---- 1728
Query: 772 TYCLGFLSNPRRFNVAITRARSLLIIVGNPHIVCQ 806
+GFL + RR NVA+TRA+S L IVGN + Q
Sbjct: 1729 ---IGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQ 1760
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 19/78 (24%)
Query: 422 VIYGPPGTGKTMTLVEAILQVYS-------------TREHS--RILVCAASNSAADHMLE 466
+I GPPGTGKT T++ I V + TR+ S +IL+CA SN+A D +L
Sbjct: 1290 LIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPGQTRKTSKNKILICAPSNAAIDEILL 1349
Query: 467 RLISNEVAGIKENEILRL 484
R+ AG+ ++E ++
Sbjct: 1350 RI----KAGVYDHEGIKF 1363
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 196/404 (48%), Gaps = 46/404 (11%)
Query: 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457
LN+ Q ++++ +L + +I G PGTGKT T+ A++++ S S +L+ + +
Sbjct: 592 LKGLNKPQKQAMKQVLLSRDYT--LIVGMPGTGKTTTIC-ALVRILSACGFS-VLLTSFT 647
Query: 458 NSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL 517
++A D++L +L +V LRL + + D+ +SI E L
Sbjct: 648 HTAVDNILLKLAKFKVG------FLRLGRAQKVHPDIRKFTEEEICRSKSIKSVTDLEEL 701
Query: 518 GRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAG 577
+ +++T +N + F +DEA Q S+P + P+ C+K+ VL G
Sbjct: 702 YNSQPVVATACMG--INHPIFVQKQFDFCIVDEASQISQPICLGPL--FCSKR--FVLVG 755
Query: 578 DPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSK 637
D +QL P++ + +A G+ +S +RL + ++ V +L YR + I+ L +K
Sbjct: 756 DHQQLPPLVQNSEARDLGMSESLFKRLEQ-------NQNAVVQLTVQYRMNSKIMSLSNK 808
Query: 638 LFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNR-FEVSKV 696
L Y G+L C + S ++A PN L F + +W E K
Sbjct: 809 LVYEGKL-ECGSEKVSNATAN---LPNLKMLKLEFA--------DASKTWLKEVLEPDKP 856
Query: 697 VDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVII 756
V +N E +DIG+I+PYR Q+ I ++ V+V T++++QG+++ +II
Sbjct: 857 VCFLNT--EKAGCRPSDIGIISPYRHQLKVITDLMARLKENRVEVNTIDKYQGRDKSIII 914
Query: 757 VSTVRSTVKHNEFDRTYCLG-FLSNPRRFNVAITRARSLLIIVG 799
VS VR++ N LG L + RR NVAITRA+ LI+VG
Sbjct: 915 VSFVRNSNDEN-------LGALLKDWRRLNVAITRAKHKLIMVG 951
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/478 (26%), Positives = 220/478 (46%), Gaps = 76/478 (15%)
Query: 360 NMRRMYQAVQAAENL--------EPNLLFPSQSTKRRSIKAAPFVPFNSLNEEQTRSVEI 411
N+ ++ + +A++ L EP + S K LN+ Q ++++
Sbjct: 577 NLSKLMENTRASQKLRDLIIDFREPQFISYLSSVLPHEAKDTVACILKGLNKPQRQAMKK 636
Query: 412 ILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISN 471
+L K +I G PGTGKT T+ + +Y+ +L+ + ++SA D++L +L
Sbjct: 637 VLLSKDYT--LIVGMPGTGKTTTICTLVRILYAC--GFSVLLTSYTHSAVDNILLKLAKF 692
Query: 472 EVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYR-------III 524
++ LRL + + D+ F EE I + ++L I+
Sbjct: 693 KIG------FLRLGQIQKVHPDIQK------FTEEEICRSKSIKSLALLEELYNSQLIVA 740
Query: 525 STYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGP 584
+T M +N R F +DEA Q S+P + P+ +++ VL GD +QL P
Sbjct: 741 TTCMG---INHPIFSRKTFDFCIVDEASQISQPVCLGPL--FFSRR--FVLVGDHQQLPP 793
Query: 585 VIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGEL 644
++ +++A G+ +S +RL + ++ V +L YR + I+ L +KL Y G+L
Sbjct: 794 LVLNREARALGMSESLFKRLEQ-------NKNAVVQLTVQYRMNSKIMSLSNKLTYEGKL 846
Query: 645 LACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCD-----EREGNNPSWF-NRFEV----- 693
C D + + + F + + F+ + E NNP F N +V
Sbjct: 847 -ECGSDKVANAVINLPNFKDVKLELEFYADYSENPWLIAAFEPNNPVCFLNTHKVPAPEQ 905
Query: 694 -----------SKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVG 742
+K+V + + +DIG+I PYRQQ+ I +L + V+V
Sbjct: 906 VEKGGVSNIMEAKLVVFLTSVFIKAGCKPSDIGIIAPYRQQLKVISDLLAQSSVGMVEVN 965
Query: 743 TVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLG-FLSNPRRFNVAITRARSLLIIVG 799
TV+++QG+++ +++VS VRS NE D T LG L + RR NVAITRA+ LI++G
Sbjct: 966 TVDRYQGRDKSIVVVSFVRS----NE-DGT--LGELLKDWRRLNVAITRAKHKLILLG 1016
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 178/366 (48%), Gaps = 45/366 (12%)
Query: 463 HMLERLISNEVAGIKENEILRLNATSRPYEDVP----TDFIRFCFFEESIFKCPPREALG 518
H+ E L E+ + +E+ R A R ++ + I E +E G
Sbjct: 2052 HIQEMLRRKEILDAQLDELSRQRALCRGGREMQRQELDEHIAIVSKERQELASKIKEVQG 2111
Query: 519 RYR-----IIISTYMSSSLLNTNG------IKRGN----FSHIFLDEAGQASEPESMIPI 563
R + II+ +++ L+T+G RG FS + +DEAGQ+ E E++ P+
Sbjct: 2112 RPQRAQNTIILESHVICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEVETLSPL 2171
Query: 564 ANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGY------ 617
+ C K ++L GDPKQL P + S A+ +G +S + R C+ E
Sbjct: 2172 IHRCNK---LILVGDPKQLPPTVISMKAQEYGYDQSMMARF--CKLLEENVEQNMIGRLP 2226
Query: 618 VTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGC 677
V +L YR HP I PS Y L + + S++ +P + P L F +
Sbjct: 2227 VLQLTIQYRMHPDICLFPSNYVYNKNLKTNRLTESIRCSSE---WPFQ--PYLVFDVGDG 2281
Query: 678 DEREGNNPSWFNRFEVSKVVDIINKLREN-TELNETDIGVITPYRQQVLKIKKVLET-WD 735
ER N+ S+ N E+ V++II ++E +++ +IG+IT Y+ Q I+K LE +D
Sbjct: 2282 SERRDND-SYINVQEIKLVMEIIKLIKEKRKDISFRNIGIITHYKAQKTMIQKDLEKEFD 2340
Query: 736 MPD-VKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSL 794
+V TV+ FQG++++ IIV+ VR++ +GFL++ +R NV ITRA+
Sbjct: 2341 KKGPAEVDTVDAFQGRQKDCIIVTCVRASAVQGS------IGFLASLQRLNVTITRAKYS 2394
Query: 795 LIIVGN 800
L I+G+
Sbjct: 2395 LFILGH 2400
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 19/91 (20%)
Query: 398 FNSLNEEQTRSVEIILGCKGAPPYV-----IYGPPGTGKTMTLVEAILQVYSTRE---HS 449
NE+Q +++E P V I+GPPGTGK+ T+V + ++ + + HS
Sbjct: 1907 LKDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHS 1966
Query: 450 -----------RILVCAASNSAADHMLERLI 469
R+LVCA SN+A D +++++I
Sbjct: 1967 DENFNAKIKQNRVLVCAPSNAAVDELMKKII 1997
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 121/433 (27%), Positives = 205/433 (47%), Gaps = 68/433 (15%)
Query: 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457
LN+ Q ++++ +L K +I G PGTGKT T+ A++++ S S +L+ + +
Sbjct: 624 LKGLNKPQRQAMKRVLLSKDYT--LIVGMPGTGKTTTIC-ALVRILSACGFS-VLLTSYT 679
Query: 458 NSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL 517
+SA D++L +L +V LRL + + + D+ F EE I + +L
Sbjct: 680 HSAVDNILLKLAKFKVG------FLRLGQSHKVHPDIQK------FTEEEICRSRSIASL 727
Query: 518 GR-------YRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQ 570
+ I+ +T M +N R F +DEA Q S+P + P+ +++
Sbjct: 728 AHLEELYNSHPIVATTCMG---INHPIFSRKTFDFCIVDEASQISQPVCLGPL--FFSRR 782
Query: 571 TVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPA 630
VL GD +QL P++ +++A G+ +S +RL +E V +L YR +
Sbjct: 783 --FVLVGDHQQLPPLVVNREARALGMSESLFKRL-------ERNESAVVQLTVQYRMNRK 833
Query: 631 ILDLPSKLFYGGELLACKDDATS--------LSSAKVDIFPNKDF--------------P 668
I+ L +KL Y G+L C D + L A++ + D+ P
Sbjct: 834 IMSLSNKLTYAGKL-ECGSDRVANAVLALPNLKDARLSLQLYADYSDSPWLAGVLEPDNP 892
Query: 669 VLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIK 728
V F E + ++++ + + +DIGVI PYRQQ+ I
Sbjct: 893 VCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGVIAPYRQQLRIIS 952
Query: 729 KVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLG-FLSNPRRFNVA 787
+L + V+V TV+++QG+++ +I+VS VRS NE D T LG L + RR NVA
Sbjct: 953 DLLARSSVGMVEVNTVDKYQGRDKSLILVSFVRS----NE-DGT--LGELLKDWRRLNVA 1005
Query: 788 ITRARSLLIIVGN 800
+TRA+ LI++G+
Sbjct: 1006 LTRAKHKLILLGS 1018
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 207/428 (48%), Gaps = 60/428 (14%)
Query: 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457
LN+ Q ++++ +L K +I G PGTGKT T+ A++++ S S +L+ + +
Sbjct: 623 LKGLNKPQRQAMKKVLLSKDYT--LIVGMPGTGKTTTIC-ALVRILSACGFS-VLLTSYT 678
Query: 458 NSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL 517
+SA D++L +L ++ LRL + + + D+ F EE + + +L
Sbjct: 679 HSAVDNILLKLAKFKIG------FLRLGQSHKVHPDIQK------FTEEEMCRLRSIASL 726
Query: 518 GRYRIIISTY--MSSSLLNTNG--IKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVV 573
+ +++ ++++ + + R F +DEA Q S+P + P+ +++
Sbjct: 727 AHLEELYNSHPVVATTCMGISHPMFSRKTFDFCIVDEASQISQPICLGPL--FFSRR--F 782
Query: 574 VLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILD 633
VL GD KQL P++ +++A G+ +S +RL +E V +L YR + I+
Sbjct: 783 VLVGDHKQLPPLVLNREARALGMSESLFKRL-------ERNESAVVQLTIQYRMNRKIMS 835
Query: 634 LPSKLFYGGELLACKDDATS--------LSSAKVDIFPN------------KDFPVLFFG 673
L +KL Y G+L C D + L +++ + + D PV F
Sbjct: 836 LSNKLTYEGKL-ECGSDRVANAVITLPNLKDVRLEFYADYSDNPWLAGVFEPDNPVCFLN 894
Query: 674 IQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLET 733
E + ++++ + + +DIG+I PYRQQ+ I +L
Sbjct: 895 TDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPSDIGIIAPYRQQLRTITDLLAR 954
Query: 734 WDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLG-FLSNPRRFNVAITRAR 792
+ V+V TV+++QG+++ +I+VS VRS NE D T LG L + RR NVAITRA+
Sbjct: 955 SSVGMVEVNTVDKYQGRDKSLILVSFVRS----NE-DGT--LGELLKDWRRLNVAITRAK 1007
Query: 793 SLLIIVGN 800
LI++G+
Sbjct: 1008 HKLILLGS 1015
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 32/293 (10%)
Query: 522 IIISTYMSSSLLNTNGIKRGN----FSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAG 577
II T +S L RG FS + +DEAGQ+ E E++ P+ + C K ++L G
Sbjct: 2150 IICCTLSTSGGLLLESAFRGQGGVPFSCVIVDEAGQSCEIETLTPLIHRCNK---LILVG 2206
Query: 578 DPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGY------VTKLVRNYRCHPAI 631
DPKQL P + S A+ +G +S + R C E + +L YR HP I
Sbjct: 2207 DPKQLPPTVISMKAQEYGYDQSMMARF--CRLLEENVEHNMISRLPILQLTVQYRMHPDI 2264
Query: 632 LDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDF-PVLFFGIQGCDEREGNNPSWFNR 690
PS Y L T+ + + + F P L F + ER N+ S+ N
Sbjct: 2265 CLFPSNYVYNRNL------KTNRQTEAIRCSSDWPFQPYLVFDVGDGSERRDND-SYINV 2317
Query: 691 FEVSKVVDIINKLREN-TELNETDIGVITPYRQQVLKIKKVLET-WDMPD-VKVGTVEQF 747
E+ V++II +++ +++ +IG+IT Y+ Q I+K L+ +D +V TV+ F
Sbjct: 2318 QEIKLVMEIIKLIKDKRKDVSFRNIGIITHYKAQKTMIQKDLDKEFDRKGPAEVDTVDAF 2377
Query: 748 QGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGN 800
QG++++ +IV+ VR+ +GFL++ +R NV ITRA+ L I+G+
Sbjct: 2378 QGRQKDCVIVTCVRANSIQGS------IGFLASLQRLNVTITRAKYSLFILGH 2424
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 19/88 (21%)
Query: 401 LNEEQTRSVEIILGCKGAPPYV-----IYGPPGTGKTMTLVEAILQVYSTRE---HS--- 449
NE+Q +++E P V I+GPPGTGK+ T+V + ++ + + HS
Sbjct: 1934 FNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDEN 1993
Query: 450 --------RILVCAASNSAADHMLERLI 469
R+LVCA SN+A D +++++I
Sbjct: 1994 SNAKIKQNRVLVCAPSNAAVDELMKKII 2021
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 116 bits (290), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 111/427 (25%), Positives = 206/427 (48%), Gaps = 59/427 (13%)
Query: 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457
LN+ Q ++++ +L K +I G PGTGKT T+ + +Y+ +L+ + +
Sbjct: 623 LKGLNKPQRQAMKKVLLSKDYT--LIVGMPGTGKTTTICTLVRILYAC--GFSVLLTSYT 678
Query: 458 NSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL 517
+SA D++L +L ++ ++ +I +++ + + + + R +SI E L
Sbjct: 679 HSAVDNILLKLAKFKIGFLRLGQIQKVHPAIQQFTE--QEICR----SKSIKSLALLEEL 732
Query: 518 GRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAG 577
++I++T +N R F +DEA Q S+P + P+ +++ VL G
Sbjct: 733 YNSQLIVATTCMG--INHPIFSRKIFDFCIVDEASQISQPICLGPL--FFSRR--FVLVG 786
Query: 578 DPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSK 637
D +QL P++ +++A G+ +S +RL + ++ V +L YR + I+ L +K
Sbjct: 787 DHQQLPPLVLNREARALGMSESLFKRLEQ-------NKSAVVQLTVQYRMNSKIMSLSNK 839
Query: 638 LFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFG-------IQGCDEREGNNPSWF-- 688
L Y G+L C D + + + F + + F+ + G E NNP F
Sbjct: 840 LTYEGKL-ECGSDKVANAVINLRHFKDVKLELEFYADYSDNPWLMGV--FEPNNPVCFLN 896
Query: 689 ---------------NRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLET 733
+ +K++ + + + +DIG+I PYRQQ LKI L
Sbjct: 897 TDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSPSDIGIIAPYRQQ-LKIINDLLA 955
Query: 734 WDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLG-FLSNPRRFNVAITRAR 792
+ V+V TV+++QG+++ +++VS VRS ++ +G L + RR NVAITRA+
Sbjct: 956 RSIGMVEVNTVDKYQGRDKSIVLVSFVRS-------NKDGTVGELLKDWRRLNVAITRAK 1008
Query: 793 SLLIIVG 799
LI++G
Sbjct: 1009 HKLILLG 1015
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 146/297 (49%), Gaps = 48/297 (16%)
Query: 522 IIISTYMSSS--LLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDP 579
II ST S+ +L T GIK F + +DEA Q +E S+IP+ K+ ++V GDP
Sbjct: 1564 IICSTLSGSAHDVLATMGIK---FDTVIIDEACQCTELSSIIPL-RYGGKRCIMV--GDP 1617
Query: 580 KQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLF 639
QL P + S A F +S R+ Y+ + YR HP+I PS F
Sbjct: 1618 NQLPPTVLSGAASNFKYNQSLFVRM------EKNSSPYLLDV--QYRMHPSISKFPSSEF 1669
Query: 640 YGGELLACKDDATSLSSAKVDIFPNKDF-------PVLFFGI-QGCDEREGNNPSWFNRF 691
Y G L KD +DI + + P FF I G E+ S+ N
Sbjct: 1670 YQGRL---KD------GPGMDILNKRPWHQLEPLAPYKFFDIISGRQEQNAKTMSYTNME 1720
Query: 692 EVSKVVDIINKLRENTELNETD----IGVITPYRQQVLKIKKVLETW----DMPDVKVGT 743
E+ +++++ L + N+ D IG+I+PYR+Q+ K++K + + T
Sbjct: 1721 EIRVAIELVDYLFRKFD-NKIDFTGKIGIISPYREQMQKMRKEFARYFGGMINKSIDFNT 1779
Query: 744 VEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGN 800
++ FQGQE+E+I++S VR+ D +GFL + RR NVA+TRA++ + ++G+
Sbjct: 1780 IDGFQGQEKEIILISCVRAD------DTKSSVGFLKDFRRMNVALTRAKTSIWVLGH 1830
Score = 38.5 bits (88), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 23/72 (31%)
Query: 422 VIYGPPGTGKTMTLVEAILQVYSTREHS-----------------------RILVCAASN 458
+I GPPGTGKT T++ I ST+ S +IL+CA SN
Sbjct: 1354 LIQGPPGTGKTKTILGIIGYFLSTKNASSSNVIKVPLEKNSSNTEQLLKKQKILICAPSN 1413
Query: 459 SAADHMLERLIS 470
+A D + RL S
Sbjct: 1414 AAVDEICLRLKS 1425
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 131/484 (27%), Positives = 199/484 (41%), Gaps = 114/484 (23%)
Query: 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458
+ LN Q +VE +L ++ GPPGTGKT T+ E I+QV IL AASN
Sbjct: 647 DKLNRSQKTAVEHVLN---NSITILQGPPGTGKTSTIEEIIIQVIERFHAFPILCVAASN 703
Query: 459 SAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFK--CPPREA 516
A D++ E+++ N IK IL + +D P I C ++K P +
Sbjct: 704 IAIDNIAEKIMENR-PQIKILRILSKKKEQQYSDDHPLGEI--CL-HNIVYKNLSPDMQV 759
Query: 517 LG--------------------RYRIIISTYMSSSLLNTNGIKRGNFSH--------IFL 548
+ + R+ S ++ T I G + +
Sbjct: 760 VANKTRRGEMISKSEDTKFYKEKNRVTNKVVSQSQIIFTTNIAAGGRELKVIKECPVVIM 819
Query: 549 DEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECE 608
DEA Q+SE +++P++ + V V GD KQL ET S ER+
Sbjct: 820 DEATQSSEASTLVPLSLPGIRNFVFV--GDEKQLSSFSNIPQLET-----SLFERVLSNG 872
Query: 609 FYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFP 668
Y+N L YR HP I + P K Y GEL KD T A +P P
Sbjct: 873 TYKN-----PLMLDTQYRMHPKISEFPIKKIYNGEL---KDGVTDEQKA----WPGVQHP 920
Query: 669 VLFFGIQGCD----------EREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVIT 718
+ F+ CD +R+ ++ N+ E ++V II L + ++ +IGVIT
Sbjct: 921 LFFY---QCDLGPESRVRSTQRDIVGFTYENKHECVEIVKIIQILMLDKKVPLEEIGVIT 977
Query: 719 PYRQQ------------VLKIKKVLETWDMPDVK-------------------------- 740
PY Q V+ K++ + +++
Sbjct: 978 PYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAGSQGTAGSLQNNVINIINGLH 1037
Query: 741 VGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGN 800
V TV+ FQG E+ II S VR+ ++ +GFL + RR NVA+TRA+ LI+VGN
Sbjct: 1038 VATVDSFQGHEKSFIIFSCVRNNTENK-------IGFLRDKRRLNVALTRAKHGLIVVGN 1090
Query: 801 PHIV 804
+++
Sbjct: 1091 KNVL 1094
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 113/464 (24%), Positives = 202/464 (43%), Gaps = 79/464 (17%)
Query: 378 LLFPSQSTKRRSIKAAPFVPF-----NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKT 432
LL +++ K R P +P+ +LN Q +++ ++ + +I G PGTGKT
Sbjct: 1024 LLVDNRAPKFRDANDDPVIPYKLSKDTTLNLNQKEAIDKVM--RAEDYALILGMPGTGKT 1081
Query: 433 MTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYE 492
+ E I + S E R+L+ + ++SA D++L +L + ++ I+RL + +
Sbjct: 1082 TVIAEIIKILVS--EGKRVLLTSYTHSAVDNILIKLRNTNIS------IMRLGMKHKVHP 1133
Query: 493 DVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTN---------GIKRGNF 543
D P ++ Y +S S+S++ T + +F
Sbjct: 1134 DTQK-------------YVPNYASVKSYNDYLSKINSTSVVATTCLGINDILFTLNEKDF 1180
Query: 544 SHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLER 603
++ LDEA Q S P ++ P+ ++ GD QL P++ + A GL +S +
Sbjct: 1181 DYVILDEASQISMPVALGPLR----YGNRFIMVGDHYQLPPLVKNDAARLGGLEESLFKT 1236
Query: 604 LFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDA----------TS 653
CE + V +L YR I+ L + L Y +L ++ +
Sbjct: 1237 F--CEKHPES----VAELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMPEA 1290
Query: 654 LSSAKVDIFPNKDF---------PVLFFGIQGC----DEREGNNPSWFNRFEVSKVVDII 700
LS + + +K + V+F C ++ E +N + N E + +
Sbjct: 1291 LSRYRNESANSKQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNIT--NHGEAELTLQCV 1348
Query: 701 NKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTV 760
+ + E DIGV+T YR Q+ +KK+ +++ T +QFQG++++ II+S V
Sbjct: 1349 EGMLLSGVPCE-DIGVMTLYRAQLRLLKKIFNKNVYDGLEILTADQFQGRDKKCIIISMV 1407
Query: 761 RSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIV 804
R + N L RR NVA+TRA+S LII+G+ +
Sbjct: 1408 RRNSQLNGG------ALLKELRRVNVAMTRAKSKLIIIGSKSTI 1445
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 35/262 (13%)
Query: 548 LDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDA-----ETFGLGKSYLE 602
+DEA Q +E + + + L GD QL P Y ++ + FG+G + +E
Sbjct: 1208 IDEASQLAECTLLGLLKSF--NNASFGLIGDIHQLPP--YCEEGLEGKLKDFGIGNT-ME 1262
Query: 603 RLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDA--TSLSSAKVD 660
R + + + V L YRCHP +L S+LFY G L++ + + + + D
Sbjct: 1263 RAIKEKMFP------VCTLRNVYRCHPKTTELLSELFYDGALVSGVSELARSDFMTKRDD 1316
Query: 661 IFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLREN--TELNETDIGVIT 718
+PN FP++F G + G + S N E S V +I+ L + +N +DIGVI+
Sbjct: 1317 FWPNPKFPMMFVNNTGASTKMGTSTS--NSSEKSIVGEIVQNLINDPRNPVNPSDIGVIS 1374
Query: 719 PYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFL 778
Y Q + + L VK GTV+ FQG E+E+II+ + + F+
Sbjct: 1375 FYSAQTSILTEHLRG---SGVKCGTVDAFQGSEKEIIIMCSTNERIS----------DFM 1421
Query: 779 SNPRRFNVAITRARSLLIIVGN 800
R NVA++RA+ + II+G+
Sbjct: 1422 QLSNRLNVAMSRAKQVTIIIGH 1443
Score = 39.7 bits (91), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNS 459
+LN+ Q V+++L G P + P G GK+MT++ A L++Y +++ + L+ SN
Sbjct: 998 ALNKYQCEYVQMLL--DGNPLIIGSSPFGCGKSMTIITAALELYKLKKNRKQLLITQSNY 1055
Query: 460 AADHMLE 466
A+ ++++
Sbjct: 1056 ASVNLID 1062
>sp|F6QXW0|DNA2_XENTR DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
tropicalis GN=dna2 PE=3 SV=1
Length = 1048
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 594 FGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATS 653
G+ +S +RL RN + V +L YR + I+ L +KL Y G L C D S
Sbjct: 799 LGMSESLFKRL-----ERNQEA--VVQLTVQYRMNSQIMALSNKLVYEGRL-ECASDRVS 850
Query: 654 LSSAKVDIFPN----------------KDF-----PVLFFGIQGCDEREGNNPSWFNRFE 692
+ K+ KD PV F + E + +
Sbjct: 851 NAVVKLPHIKTLLLELEFRESQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWI 910
Query: 693 VSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQER 752
+K+V + KL +DIG+I PYRQQ+ I + V+V TV+++QG+++
Sbjct: 911 EAKLVFCLTKLFLKAGCRPSDIGIIAPYRQQLKVISNYFNSLSASAVEVNTVDKYQGRDK 970
Query: 753 EVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVG 799
VIIVS VRS + D L + RR NVA+TRA+ LI++G
Sbjct: 971 SVIIVSFVRSNIDGKLGD------LLKDWRRLNVALTRAKHKLIMLG 1011
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 112/424 (26%), Positives = 192/424 (45%), Gaps = 63/424 (14%)
Query: 401 LNEEQTRSVEIILGCKGAPPY-VIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNS 459
LNE+Q +++ C A Y +I G PGTGKT T+ I + + ++ + + ++
Sbjct: 932 LNEDQITALK---KCHAAEHYSLILGMPGTGKTTTISSLIRSLLAKKKKIL--LTSFTHL 986
Query: 460 AADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGR 519
A D++L +L G ++ I+RL + + + V FC E + F +L
Sbjct: 987 AVDNILIKL-----KGC-DSTIVRLGSPHKIHPLVK----EFCLTEGTTFD--DLASLKH 1034
Query: 520 YRIIISTYMSSSLLNTNGI-KRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGD 578
+ SSL + I + F + +DEA Q P + P+ L K VL GD
Sbjct: 1035 FYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLPICLGPL-QLAEK---FVLVGD 1090
Query: 579 PKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKL 638
QL P++ K++ T G S E + VT L YR + I L S+L
Sbjct: 1091 HYQLPPLV--KNSRTSKDGLSLSLFKLLSEKHPEA----VTTLRLQYRMNEDINSLSSEL 1144
Query: 639 FYGGELL---------------ACKDDATSLSSAK---VDIFPNKDFPVLFFG---IQGC 677
YGG L+ A D SS+ V+ N V+FF I G
Sbjct: 1145 IYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSHSVIFFNTDDILGV 1204
Query: 678 DEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMP 737
+ + N N E + ++ E + ++ IG+I+ Y+ QV + K L+++
Sbjct: 1205 ESKTNNILE--NHTEAFLIEQAVSSFLERG-VKQSSIGIISIYKSQVELLSKNLKSF--T 1259
Query: 738 DVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLG-FLSNPRRFNVAITRARSLLI 796
++++ TV+++QG+++++I++S VRS K+ +G L + R NVA++RA+ I
Sbjct: 1260 EIEINTVDRYQGRDKDIILISFVRSNSKN-------LVGELLRDWHRLNVALSRAKVKCI 1312
Query: 797 IVGN 800
+ G+
Sbjct: 1313 MFGS 1316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 299,105,000
Number of Sequences: 539616
Number of extensions: 12873962
Number of successful extensions: 34239
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 33764
Number of HSP's gapped (non-prelim): 238
length of query: 806
length of database: 191,569,459
effective HSP length: 126
effective length of query: 680
effective length of database: 123,577,843
effective search space: 84032933240
effective search space used: 84032933240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)