Query 038509
Match_columns 806
No_of_seqs 506 out of 2418
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjy_A Regulator of nonsense t 100.0 5.2E-80 1.8E-84 743.6 38.6 638 130-806 63-767 (800)
2 4b3f_X DNA-binding protein smu 100.0 5.5E-78 1.9E-82 717.6 48.6 527 247-806 3-617 (646)
3 2xzl_A ATP-dependent helicase 100.0 1.3E-78 4.4E-83 732.4 42.9 634 130-806 68-769 (802)
4 2gk6_A Regulator of nonsense t 100.0 2.3E-71 8E-76 657.1 47.8 534 241-806 2-591 (624)
5 3lfu_A DNA helicase II; SF1 he 100.0 2.3E-32 8E-37 325.5 20.3 286 399-724 8-360 (647)
6 1pjr_A PCRA; DNA repair, DNA r 100.0 7.5E-31 2.6E-35 315.7 18.3 287 399-727 10-367 (724)
7 3e1s_A Exodeoxyribonuclease V, 100.0 1.5E-29 5.1E-34 295.2 18.8 286 400-805 189-545 (574)
8 3upu_A ATP-dependent DNA helic 100.0 5.2E-29 1.8E-33 284.6 19.0 188 398-640 23-212 (459)
9 1uaa_A REP helicase, protein ( 100.0 6.7E-30 2.3E-34 305.6 11.7 280 400-722 2-353 (673)
10 1w36_D RECD, exodeoxyribonucle 99.9 2E-25 6.9E-30 262.8 19.8 356 401-805 150-587 (608)
11 3u4q_A ATP-dependent helicase/ 99.9 3.6E-24 1.2E-28 270.8 14.0 169 542-721 400-592 (1232)
12 3vkw_A Replicase large subunit 99.9 2.9E-21 1E-25 215.0 17.5 259 419-799 162-420 (446)
13 1w36_B RECB, exodeoxyribonucle 99.8 1.1E-20 3.9E-25 238.2 15.9 163 542-723 377-563 (1180)
14 3dmn_A Putative DNA helicase; 99.6 1.9E-15 6.6E-20 149.3 10.4 139 622-800 2-153 (174)
15 3u4q_B ATP-dependent helicase/ 99.5 2.3E-14 7.8E-19 181.1 12.2 167 544-748 203-380 (1166)
16 1rif_A DAR protein, DNA helica 98.8 5E-08 1.7E-12 103.4 13.4 134 400-564 113-246 (282)
17 1qde_A EIF4A, translation init 98.7 5.2E-08 1.8E-12 99.2 12.3 130 399-553 35-166 (224)
18 3b6e_A Interferon-induced heli 98.7 2.5E-08 8.4E-13 100.6 8.9 132 400-556 33-176 (216)
19 2fz4_A DNA repair protein RAD2 98.7 1.1E-07 3.7E-12 98.3 13.7 138 400-581 93-230 (237)
20 2gxq_A Heat resistant RNA depe 98.7 6.8E-08 2.3E-12 96.9 11.3 128 399-552 22-154 (207)
21 2pl3_A Probable ATP-dependent 98.7 4.7E-08 1.6E-12 100.5 10.0 132 398-554 45-183 (236)
22 3iuy_A Probable ATP-dependent 98.7 1.1E-07 3.7E-12 97.3 11.9 129 399-552 41-177 (228)
23 1hv8_A Putative ATP-dependent 98.6 8.2E-08 2.8E-12 104.6 10.7 133 399-555 27-160 (367)
24 2oxc_A Probable ATP-dependent 98.6 1.4E-07 4.8E-12 96.7 10.8 132 399-554 45-178 (230)
25 1t6n_A Probable ATP-dependent 98.6 1.9E-07 6.3E-12 94.8 10.9 133 399-555 35-171 (220)
26 1vec_A ATP-dependent RNA helic 98.6 3.2E-07 1.1E-11 91.9 12.3 135 399-556 24-160 (206)
27 3pey_A ATP-dependent RNA helic 98.6 4.9E-07 1.7E-11 99.4 14.5 128 399-552 26-155 (395)
28 3bor_A Human initiation factor 98.5 2.6E-07 9E-12 95.2 10.4 69 399-470 51-120 (237)
29 1xti_A Probable ATP-dependent 98.5 3.7E-06 1.3E-10 92.5 20.2 134 399-556 29-166 (391)
30 3dkp_A Probable ATP-dependent 98.5 5.9E-07 2E-11 92.8 12.6 133 398-553 49-186 (245)
31 3eiq_A Eukaryotic initiation f 98.5 6E-06 2E-10 91.6 21.6 131 399-552 61-193 (414)
32 3h1t_A Type I site-specific re 98.5 4.3E-07 1.5E-11 106.5 12.1 149 400-581 178-343 (590)
33 2oca_A DAR protein, ATP-depend 98.5 7.8E-07 2.7E-11 102.1 14.1 133 400-563 113-245 (510)
34 3ber_A Probable ATP-dependent 98.5 8.2E-07 2.8E-11 92.3 12.7 130 399-552 64-196 (249)
35 3fmo_B ATP-dependent RNA helic 98.5 6.6E-07 2.2E-11 95.8 11.9 132 398-553 112-246 (300)
36 3fht_A ATP-dependent RNA helic 98.5 1.2E-06 4.2E-11 97.0 14.5 72 398-470 45-117 (412)
37 3ly5_A ATP-dependent RNA helic 98.5 6.3E-07 2.1E-11 93.9 11.4 69 399-470 75-148 (262)
38 3fe2_A Probable ATP-dependent 98.4 8.9E-07 3E-11 91.4 11.4 132 398-553 49-187 (242)
39 1fuu_A Yeast initiation factor 98.4 6.2E-07 2.1E-11 98.7 9.9 130 399-553 42-173 (394)
40 1q0u_A Bstdead; DEAD protein, 98.4 3.9E-07 1.3E-11 92.5 7.4 69 399-470 25-94 (219)
41 1wrb_A DJVLGB; RNA helicase, D 98.4 2.3E-06 7.7E-11 88.9 13.1 130 399-552 44-184 (253)
42 1wp9_A ATP-dependent RNA helic 98.4 1.5E-06 5.1E-11 97.8 12.6 129 400-555 9-138 (494)
43 1s2m_A Putative ATP-dependent 98.4 1.5E-06 5.1E-11 96.2 12.0 136 399-558 42-179 (400)
44 2fwr_A DNA repair protein RAD2 98.3 2.4E-06 8.3E-11 97.0 12.9 138 400-581 93-230 (472)
45 2z0m_A 337AA long hypothetical 98.3 1.6E-06 5.4E-11 93.2 10.8 124 399-552 15-139 (337)
46 3fho_A ATP-dependent RNA helic 98.3 7.1E-07 2.4E-11 102.7 8.4 127 400-552 141-269 (508)
47 3oiy_A Reverse gyrase helicase 98.3 1.5E-06 5.3E-11 96.9 10.7 127 400-552 21-149 (414)
48 3fmp_B ATP-dependent RNA helic 98.3 2.1E-06 7.3E-11 97.7 11.8 71 399-470 113-184 (479)
49 2j0s_A ATP-dependent RNA helic 98.3 1.5E-06 5E-11 96.6 9.2 133 399-555 58-192 (410)
50 4a2p_A RIG-I, retinoic acid in 98.2 4.7E-06 1.6E-10 96.2 13.3 134 400-557 7-145 (556)
51 2va8_A SSO2462, SKI2-type heli 98.2 2.4E-06 8.1E-11 102.5 10.4 128 398-553 28-156 (715)
52 3tbk_A RIG-I helicase domain; 98.2 4.4E-06 1.5E-10 96.2 12.0 134 400-557 4-142 (555)
53 2zj8_A DNA helicase, putative 98.2 2.7E-06 9.1E-11 102.2 10.3 127 398-552 21-148 (720)
54 2db3_A ATP-dependent RNA helic 98.2 4.6E-06 1.6E-10 93.9 11.6 132 399-554 77-215 (434)
55 2p6r_A Afuhel308 helicase; pro 98.2 2.5E-06 8.5E-11 102.1 9.3 125 398-553 23-149 (702)
56 2i4i_A ATP-dependent RNA helic 98.2 6E-06 2E-10 91.7 11.3 131 398-552 35-185 (417)
57 2b8t_A Thymidine kinase; deoxy 98.1 1.3E-06 4.6E-11 89.1 3.9 38 419-458 13-50 (223)
58 1z63_A Helicase of the SNF2/RA 98.1 1.5E-05 5.1E-10 91.1 13.2 149 400-581 37-189 (500)
59 3llm_A ATP-dependent RNA helic 98.1 9.7E-06 3.3E-10 83.3 10.5 68 400-470 61-131 (235)
60 2l8b_A Protein TRAI, DNA helic 98.1 6.7E-06 2.3E-10 79.9 8.3 128 402-584 36-163 (189)
61 2ykg_A Probable ATP-dependent 98.1 2.1E-05 7.1E-10 93.8 13.8 133 400-556 13-150 (696)
62 4gl2_A Interferon-induced heli 98.1 4.3E-06 1.5E-10 99.8 7.8 129 400-553 7-147 (699)
63 4a2q_A RIG-I, retinoic acid in 98.0 1.5E-05 5.3E-10 96.6 12.4 134 400-557 248-386 (797)
64 4a4z_A Antiviral helicase SKI2 98.0 2E-05 6.8E-10 97.5 13.1 66 400-470 39-104 (997)
65 2eyq_A TRCF, transcription-rep 98.0 1.2E-05 4E-10 101.0 10.6 142 400-567 603-749 (1151)
66 2zpa_A Uncharacterized protein 98.0 2.3E-05 7.9E-10 91.5 12.2 159 400-640 175-335 (671)
67 2orw_A Thymidine kinase; TMTK, 98.0 1.3E-05 4.3E-10 79.4 8.7 36 420-457 5-40 (184)
68 2xgj_A ATP-dependent RNA helic 98.0 2.2E-05 7.7E-10 97.1 12.3 66 400-470 86-151 (1010)
69 3l9o_A ATP-dependent RNA helic 98.0 3.6E-05 1.2E-09 96.2 14.2 66 400-470 184-249 (1108)
70 1xx6_A Thymidine kinase; NESG, 97.9 1.5E-05 5.2E-10 79.3 8.3 36 420-457 10-45 (191)
71 2j9r_A Thymidine kinase; TK1, 97.9 2.5E-05 8.5E-10 78.7 9.8 37 420-458 30-66 (214)
72 1gm5_A RECG; helicase, replica 97.9 1.3E-05 4.4E-10 96.3 9.1 69 400-470 368-439 (780)
73 4ddu_A Reverse gyrase; topoiso 97.9 5E-05 1.7E-09 94.8 14.4 126 400-551 78-205 (1104)
74 3sqw_A ATP-dependent RNA helic 97.9 1.8E-05 6.2E-10 92.4 9.5 71 399-470 42-117 (579)
75 4a2w_A RIG-I, retinoic acid in 97.9 2E-05 6.8E-10 97.2 10.0 134 400-557 248-386 (936)
76 3i5x_A ATP-dependent RNA helic 97.9 2.3E-05 7.9E-10 91.0 10.0 72 398-470 92-168 (563)
77 3dmq_A RNA polymerase-associat 97.8 2.6E-05 8.8E-10 96.5 9.7 159 400-582 153-319 (968)
78 4f92_B U5 small nuclear ribonu 97.8 3.9E-05 1.3E-09 99.6 10.4 71 398-470 924-994 (1724)
79 1w4r_A Thymidine kinase; type 97.7 3.5E-05 1.2E-09 76.4 6.6 36 420-457 22-57 (195)
80 3e2i_A Thymidine kinase; Zn-bi 97.7 9.5E-05 3.2E-09 74.3 8.5 38 419-458 29-66 (219)
81 2chg_A Replication factor C sm 97.6 0.00028 9.5E-09 70.3 11.4 41 402-442 22-62 (226)
82 2v1x_A ATP-dependent DNA helic 97.6 0.0013 4.3E-08 76.9 17.8 64 399-470 43-106 (591)
83 4f92_B U5 small nuclear ribonu 97.6 0.00022 7.7E-09 92.5 12.4 74 395-470 74-156 (1724)
84 1z3i_X Similar to RAD54-like; 97.6 0.00019 6.4E-09 84.9 10.7 165 400-581 55-232 (644)
85 2w00_A HSDR, R.ECOR124I; ATP-b 97.5 0.00016 5.4E-09 89.3 10.0 153 400-581 271-440 (1038)
86 1gku_B Reverse gyrase, TOP-RG; 97.5 8E-05 2.7E-09 92.8 6.4 126 401-553 58-186 (1054)
87 2xau_A PRE-mRNA-splicing facto 97.5 0.00019 6.5E-09 86.4 9.3 67 402-470 95-162 (773)
88 3o8b_A HCV NS3 protease/helica 97.4 0.00037 1.3E-08 81.7 10.0 103 420-561 234-336 (666)
89 2jlq_A Serine protease subunit 97.4 0.00029 1E-08 79.5 8.6 57 409-469 12-69 (451)
90 3mwy_W Chromo domain-containin 97.3 0.0007 2.4E-08 82.0 11.8 168 400-581 236-407 (800)
91 2z4s_A Chromosomal replication 97.3 0.001 3.5E-08 74.8 11.9 56 402-457 113-169 (440)
92 2orv_A Thymidine kinase; TP4A 97.3 0.00047 1.6E-08 70.0 8.1 37 420-458 21-57 (234)
93 3crv_A XPD/RAD3 related DNA he 97.3 0.00085 2.9E-08 77.7 11.1 64 400-470 3-69 (551)
94 1a5t_A Delta prime, HOLB; zinc 97.2 0.00087 3E-08 72.5 10.1 48 541-589 107-158 (334)
95 2z83_A Helicase/nucleoside tri 97.2 0.00045 1.5E-08 78.2 8.0 49 419-469 22-71 (459)
96 1l8q_A Chromosomal replication 97.2 0.0011 3.8E-08 71.1 10.7 53 402-456 19-73 (324)
97 2gno_A DNA polymerase III, gam 97.2 0.00051 1.7E-08 73.4 7.4 47 542-589 82-132 (305)
98 1iqp_A RFCS; clamp loader, ext 97.1 0.00069 2.4E-08 72.2 8.2 41 402-442 30-70 (327)
99 2v6i_A RNA helicase; membrane, 97.1 0.0012 4.1E-08 74.1 10.1 48 420-469 4-52 (431)
100 1sxj_B Activator 1 37 kDa subu 97.1 0.001 3.5E-08 70.7 8.7 41 402-442 26-66 (323)
101 2chq_A Replication factor C sm 97.1 0.0016 5.3E-08 69.2 9.8 41 402-442 22-62 (319)
102 1oyw_A RECQ helicase, ATP-depe 97.0 0.00031 1.1E-08 80.9 4.4 64 399-470 24-87 (523)
103 2whx_A Serine protease/ntpase/ 97.0 0.0011 3.7E-08 77.8 8.8 49 419-469 187-236 (618)
104 2vl7_A XPD; helicase, unknown 97.0 0.00094 3.2E-08 77.2 8.1 64 400-470 7-73 (540)
105 2wv9_A Flavivirin protease NS2 97.0 0.00077 2.6E-08 79.8 7.3 51 419-470 242-292 (673)
106 2ys4_A Hydrocephalus-inducing 97.0 0.0014 4.9E-08 60.0 7.3 80 45-157 27-106 (122)
107 1yks_A Genome polyprotein [con 96.9 0.0012 4.1E-08 74.3 7.4 50 420-470 10-59 (440)
108 1njg_A DNA polymerase III subu 96.9 0.0084 2.9E-07 60.0 12.9 41 402-442 28-69 (250)
109 3u61_B DNA polymerase accessor 96.8 0.0038 1.3E-07 66.8 10.3 38 401-438 30-68 (324)
110 2o0j_A Terminase, DNA packagin 96.6 0.013 4.3E-07 64.4 12.7 68 400-470 163-230 (385)
111 3bos_A Putative DNA replicatio 96.6 0.0038 1.3E-07 63.0 7.9 55 400-456 34-88 (242)
112 3rc3_A ATP-dependent RNA helic 96.5 0.0063 2.1E-07 71.9 10.3 45 420-470 157-201 (677)
113 2bjv_A PSP operon transcriptio 96.5 0.0078 2.7E-07 62.3 9.6 38 418-457 29-66 (265)
114 3kl4_A SRP54, signal recogniti 96.5 0.0069 2.4E-07 67.6 9.5 34 420-455 99-132 (433)
115 1g5t_A COB(I)alamin adenosyltr 96.4 0.0092 3.2E-07 59.1 9.1 39 418-458 28-66 (196)
116 1jbk_A CLPB protein; beta barr 96.4 0.0035 1.2E-07 60.5 5.7 41 403-443 28-68 (195)
117 3pfi_A Holliday junction ATP-d 96.3 0.015 5E-07 62.5 10.7 36 402-437 34-74 (338)
118 3dm5_A SRP54, signal recogniti 96.2 0.0091 3.1E-07 66.7 8.9 34 420-455 102-135 (443)
119 3pvs_A Replication-associated 96.2 0.0055 1.9E-07 69.0 7.2 34 408-442 40-73 (447)
120 2e6j_A Hydin protein; PAPD, st 96.2 0.009 3.1E-07 53.4 7.3 81 49-157 16-96 (112)
121 3cpe_A Terminase, DNA packagin 96.2 0.024 8.1E-07 66.1 12.4 68 400-470 163-230 (592)
122 1sxj_A Activator 1 95 kDa subu 96.1 0.016 5.4E-07 66.5 10.4 39 401-439 43-98 (516)
123 3ec2_A DNA replication protein 96.1 0.0064 2.2E-07 59.0 6.1 54 401-455 15-74 (180)
124 2p65_A Hypothetical protein PF 96.1 0.0044 1.5E-07 59.7 4.8 40 403-442 28-67 (187)
125 2w58_A DNAI, primosome compone 96.0 0.011 3.7E-07 58.4 7.5 36 419-456 55-90 (202)
126 3te6_A Regulatory protein SIR3 96.0 0.0035 1.2E-07 67.1 3.9 34 411-444 38-71 (318)
127 3syl_A Protein CBBX; photosynt 95.8 0.015 5E-07 61.5 7.8 24 419-442 68-91 (309)
128 1tf5_A Preprotein translocase 95.3 0.08 2.7E-06 63.1 12.3 64 400-470 83-146 (844)
129 3h4m_A Proteasome-activating n 95.3 0.011 3.7E-07 61.8 4.4 36 401-436 21-69 (285)
130 1sxj_C Activator 1 40 kDa subu 95.3 0.02 6.7E-07 61.7 6.5 41 402-442 30-70 (340)
131 1ofh_A ATP-dependent HSL prote 95.3 0.017 5.8E-07 60.8 5.8 25 418-443 50-74 (310)
132 1tue_A Replication protein E1; 95.2 0.013 4.4E-07 58.4 4.3 21 420-440 60-80 (212)
133 2qsv_A Uncharacterized protein 95.2 0.11 3.7E-06 52.4 11.3 82 43-156 2-87 (220)
134 2qz4_A Paraplegin; AAA+, SPG7, 95.2 0.016 5.6E-07 59.4 5.3 19 419-437 40-58 (262)
135 2qby_B CDC6 homolog 3, cell di 95.1 0.035 1.2E-06 60.4 7.8 43 402-444 25-71 (384)
136 1sxj_D Activator 1 41 kDa subu 94.9 0.016 5.6E-07 62.2 4.5 41 402-442 42-82 (353)
137 2dr3_A UPF0273 protein PH0284; 94.9 0.029 9.9E-07 56.8 6.1 49 419-470 24-72 (247)
138 3io5_A Recombination and repai 94.9 0.019 6.6E-07 61.0 4.8 49 420-468 30-78 (333)
139 3co5_A Putative two-component 94.9 0.013 4.6E-07 54.7 3.3 17 418-434 27-43 (143)
140 3n70_A Transport activator; si 94.8 0.034 1.2E-06 52.0 6.0 22 418-440 24-45 (145)
141 4a15_A XPD helicase, ATP-depen 94.8 0.043 1.5E-06 64.3 8.0 69 401-470 4-73 (620)
142 3eie_A Vacuolar protein sortin 94.7 0.028 9.6E-07 60.1 5.6 41 401-442 22-74 (322)
143 4b4t_M 26S protease regulatory 94.7 0.025 8.7E-07 63.0 5.3 31 421-456 218-248 (434)
144 1c4o_A DNA nucleotide excision 94.7 0.046 1.6E-06 64.6 7.8 66 400-470 8-75 (664)
145 2qsv_A Uncharacterized protein 94.6 0.049 1.7E-06 55.0 6.7 71 59-156 130-205 (220)
146 3b9p_A CG5977-PA, isoform A; A 94.5 0.028 9.4E-07 59.1 5.0 35 402-436 26-72 (297)
147 2kjq_A DNAA-related protein; s 94.5 0.033 1.1E-06 52.6 4.9 39 400-442 22-60 (149)
148 2qgz_A Helicase loader, putati 94.5 0.029 1E-06 59.7 5.1 36 419-456 153-189 (308)
149 4b4t_L 26S protease subunit RP 94.4 0.032 1.1E-06 62.2 5.3 31 421-456 218-248 (437)
150 3uk6_A RUVB-like 2; hexameric 94.4 0.034 1.1E-06 60.3 5.4 23 420-443 72-94 (368)
151 3cf0_A Transitional endoplasmi 94.4 0.029 9.9E-07 59.4 4.7 22 419-441 50-71 (301)
152 1sxj_E Activator 1 40 kDa subu 94.4 0.027 9.1E-07 60.7 4.5 42 402-443 19-61 (354)
153 2qby_A CDC6 homolog 1, cell di 94.4 0.057 1.9E-06 58.4 7.2 54 402-455 25-83 (386)
154 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.035 1.2E-06 59.5 5.2 18 420-437 47-64 (322)
155 1nkt_A Preprotein translocase 94.3 0.14 4.9E-06 61.2 10.8 64 400-470 111-174 (922)
156 4b4t_K 26S protease regulatory 94.3 0.022 7.4E-07 63.5 3.6 31 421-456 209-239 (428)
157 2v1u_A Cell division control p 94.3 0.042 1.4E-06 59.5 5.9 42 402-443 24-69 (387)
158 4b4t_J 26S protease regulatory 94.2 0.022 7.7E-07 62.6 3.5 31 421-456 185-215 (405)
159 2r62_A Cell division protease 94.2 0.02 7E-07 59.1 3.0 19 419-437 45-63 (268)
160 3t15_A Ribulose bisphosphate c 94.1 0.023 8E-07 60.0 3.4 23 420-443 38-60 (293)
161 1lv7_A FTSH; alpha/beta domain 94.0 0.042 1.4E-06 56.5 4.9 23 419-442 46-68 (257)
162 1d2n_A N-ethylmaleimide-sensit 94.0 0.038 1.3E-06 57.4 4.5 20 419-438 65-84 (272)
163 2r8r_A Sensor protein; KDPD, P 93.9 0.051 1.7E-06 55.0 5.2 34 420-455 8-41 (228)
164 2qp9_X Vacuolar protein sortin 93.9 0.048 1.7E-06 59.2 5.4 22 420-442 86-107 (355)
165 2fsf_A Preprotein translocase 93.9 0.099 3.4E-06 62.3 8.3 64 400-470 74-137 (853)
166 4b4t_I 26S protease regulatory 93.9 0.03 1E-06 62.0 3.6 31 421-456 219-249 (437)
167 1hqc_A RUVB; extended AAA-ATPa 93.8 0.062 2.1E-06 57.0 6.0 37 402-438 17-58 (324)
168 3hws_A ATP-dependent CLP prote 93.8 0.028 9.7E-07 61.1 3.3 25 418-443 51-75 (363)
169 1g8p_A Magnesium-chelatase 38 93.8 0.031 1.1E-06 60.0 3.6 24 418-442 45-68 (350)
170 2zts_A Putative uncharacterize 93.7 0.064 2.2E-06 54.3 5.5 50 419-470 31-80 (251)
171 3pxg_A Negative regulator of g 93.6 0.062 2.1E-06 60.7 5.8 41 403-444 186-226 (468)
172 3d8b_A Fidgetin-like protein 1 93.6 0.051 1.8E-06 59.0 4.9 19 419-437 118-136 (357)
173 1fnn_A CDC6P, cell division co 93.5 0.056 1.9E-06 58.7 5.1 53 402-455 22-80 (389)
174 1jr3_A DNA polymerase III subu 93.5 0.071 2.4E-06 57.6 5.8 41 402-442 21-62 (373)
175 4b4t_H 26S protease regulatory 93.3 0.035 1.2E-06 62.0 2.9 31 421-456 246-276 (467)
176 2w0m_A SSO2452; RECA, SSPF, un 93.3 0.084 2.9E-06 52.7 5.6 48 419-469 24-71 (235)
177 2r44_A Uncharacterized protein 93.3 0.045 1.5E-06 58.5 3.7 36 404-442 34-69 (331)
178 3hr8_A Protein RECA; alpha and 93.2 0.064 2.2E-06 58.2 4.7 47 420-468 63-109 (356)
179 2ipc_A Preprotein translocase 93.2 0.24 8.2E-06 59.3 9.8 64 400-470 79-142 (997)
180 2zan_A Vacuolar protein sortin 93.1 0.068 2.3E-06 59.9 5.0 19 419-437 168-186 (444)
181 1w36_C RECC, exodeoxyribonucle 93.1 0.023 7.8E-07 71.2 1.1 62 736-800 656-732 (1122)
182 2r2a_A Uncharacterized protein 93.0 0.051 1.7E-06 54.0 3.3 22 420-441 7-28 (199)
183 2zr9_A Protein RECA, recombina 93.0 0.067 2.3E-06 58.0 4.5 47 419-467 62-108 (349)
184 1in4_A RUVB, holliday junction 92.9 0.083 2.8E-06 56.8 5.1 24 419-443 52-75 (334)
185 3vfd_A Spastin; ATPase, microt 92.8 0.088 3E-06 57.8 5.4 38 402-440 120-169 (389)
186 2c9o_A RUVB-like 1; hexameric 92.7 0.1 3.6E-06 58.6 5.9 23 420-443 65-87 (456)
187 4fcw_A Chaperone protein CLPB; 92.7 0.052 1.8E-06 57.2 3.2 24 420-444 49-72 (311)
188 3kb2_A SPBC2 prophage-derived 92.7 0.064 2.2E-06 50.9 3.5 18 420-437 3-20 (173)
189 3bh0_A DNAB-like replicative h 92.6 0.11 3.6E-06 55.5 5.4 49 419-470 69-117 (315)
190 1p9r_A General secretion pathw 92.4 0.11 3.8E-06 57.6 5.5 51 400-453 150-200 (418)
191 1um8_A ATP-dependent CLP prote 92.3 0.074 2.5E-06 58.0 3.9 24 418-442 72-95 (376)
192 1u94_A RECA protein, recombina 92.3 0.097 3.3E-06 56.8 4.7 39 419-459 64-102 (356)
193 2z0h_A DTMP kinase, thymidylat 92.2 0.21 7E-06 48.6 6.6 30 421-452 3-32 (197)
194 1u0j_A DNA replication protein 92.2 0.12 4.3E-06 53.5 5.1 39 399-437 82-123 (267)
195 2d7d_A Uvrabc system protein B 92.2 0.27 9.3E-06 57.9 8.7 66 400-470 12-79 (661)
196 2x8a_A Nuclear valosin-contain 92.1 0.067 2.3E-06 55.9 3.1 21 421-442 47-67 (274)
197 3hu3_A Transitional endoplasmi 92.1 0.13 4.3E-06 58.5 5.4 21 419-440 239-259 (489)
198 1qhx_A CPT, protein (chloramph 92.1 0.068 2.3E-06 51.3 2.8 18 420-437 5-22 (178)
199 3pxi_A Negative regulator of g 92.1 0.12 4.2E-06 61.9 5.7 42 402-444 185-226 (758)
200 1vma_A Cell division protein F 92.0 0.14 4.7E-06 54.4 5.3 34 420-455 106-139 (306)
201 1xp8_A RECA protein, recombina 91.9 0.11 3.7E-06 56.7 4.5 48 419-468 75-122 (366)
202 1ixz_A ATP-dependent metallopr 91.7 0.079 2.7E-06 54.2 3.0 21 421-442 52-72 (254)
203 1kht_A Adenylate kinase; phosp 91.7 0.099 3.4E-06 50.5 3.6 21 420-440 5-25 (192)
204 1nks_A Adenylate kinase; therm 91.7 0.094 3.2E-06 50.7 3.4 24 420-444 3-26 (194)
205 1nlf_A Regulatory protein REPA 91.7 0.2 7E-06 52.0 6.2 49 419-469 31-88 (279)
206 1qvr_A CLPB protein; coiled co 91.6 0.25 8.7E-06 60.0 7.7 53 404-456 177-234 (854)
207 3iij_A Coilin-interacting nucl 91.6 0.12 3.9E-06 49.9 3.8 20 419-438 12-31 (180)
208 1xjc_A MOBB protein homolog; s 91.5 0.18 6.1E-06 48.7 5.1 39 419-459 5-43 (169)
209 1ly1_A Polynucleotide kinase; 91.5 0.096 3.3E-06 50.1 3.2 18 420-437 4-21 (181)
210 3trf_A Shikimate kinase, SK; a 91.4 0.11 3.8E-06 50.1 3.5 20 420-439 7-26 (185)
211 2px0_A Flagellar biosynthesis 91.3 0.17 6E-06 53.3 5.2 36 420-456 107-142 (296)
212 1ojl_A Transcriptional regulat 91.3 0.19 6.4E-06 53.2 5.4 23 418-441 25-47 (304)
213 1r6b_X CLPA protein; AAA+, N-t 91.1 0.18 6.3E-06 60.4 5.8 41 402-442 191-231 (758)
214 2rhm_A Putative kinase; P-loop 91.1 0.11 3.9E-06 50.2 3.4 21 420-440 7-27 (193)
215 3p32_A Probable GTPase RV1496/ 91.1 0.22 7.7E-06 53.9 6.0 36 419-456 80-115 (355)
216 3lw7_A Adenylate kinase relate 91.1 0.1 3.5E-06 49.3 2.9 18 420-437 3-20 (179)
217 3qbt_B Inositol polyphosphate 91.1 0.54 1.8E-05 43.8 7.7 89 44-157 27-125 (140)
218 3fb4_A Adenylate kinase; psych 91.0 0.12 4.3E-06 51.2 3.5 17 421-437 3-19 (216)
219 2iyv_A Shikimate kinase, SK; t 90.9 0.14 4.8E-06 49.4 3.8 18 420-437 4-21 (184)
220 2cvh_A DNA repair and recombin 90.8 0.14 4.9E-06 50.6 3.8 35 419-458 21-55 (220)
221 4eun_A Thermoresistant glucoki 90.8 0.14 4.8E-06 50.4 3.7 24 419-443 30-53 (200)
222 1kag_A SKI, shikimate kinase I 90.8 0.12 4.3E-06 49.1 3.2 22 420-442 6-27 (173)
223 1via_A Shikimate kinase; struc 90.8 0.15 5E-06 48.9 3.7 18 420-437 6-23 (175)
224 2v3c_C SRP54, signal recogniti 90.8 0.15 5.2E-06 56.8 4.3 34 420-455 101-134 (432)
225 2plr_A DTMP kinase, probable t 90.7 0.14 4.7E-06 50.4 3.5 21 420-440 6-26 (213)
226 2r6a_A DNAB helicase, replicat 90.7 0.27 9.2E-06 55.2 6.3 49 419-469 204-252 (454)
227 3cm0_A Adenylate kinase; ATP-b 90.7 0.14 4.9E-06 49.3 3.6 19 420-438 6-24 (186)
228 1iy2_A ATP-dependent metallopr 90.7 0.11 3.9E-06 54.0 3.0 21 421-442 76-96 (278)
229 2j37_W Signal recognition part 90.6 0.28 9.4E-06 55.7 6.3 42 421-464 104-148 (504)
230 3vaa_A Shikimate kinase, SK; s 90.6 0.15 5E-06 50.2 3.6 21 419-439 26-46 (199)
231 3sr0_A Adenylate kinase; phosp 90.6 0.15 5E-06 50.9 3.5 21 421-442 3-23 (206)
232 1zu4_A FTSY; GTPase, signal re 90.6 0.23 7.9E-06 53.0 5.3 34 420-455 107-140 (320)
233 1cr0_A DNA primase/helicase; R 90.5 0.28 9.6E-06 51.4 6.0 49 419-469 36-84 (296)
234 1n0w_A DNA repair protein RAD5 90.5 0.17 5.8E-06 50.9 4.1 40 419-458 25-68 (243)
235 3dl0_A Adenylate kinase; phosp 90.5 0.12 4.1E-06 51.4 2.8 17 421-437 3-19 (216)
236 1tev_A UMP-CMP kinase; ploop, 90.4 0.15 5.3E-06 49.2 3.5 18 420-437 5-22 (196)
237 3l0o_A Transcription terminati 90.4 0.34 1.2E-05 52.8 6.3 48 406-453 163-210 (427)
238 3ice_A Transcription terminati 90.4 0.34 1.2E-05 52.9 6.4 48 404-451 160-207 (422)
239 3t61_A Gluconokinase; PSI-biol 90.4 0.17 5.7E-06 49.8 3.7 18 420-437 20-37 (202)
240 3nbx_X ATPase RAVA; AAA+ ATPas 90.3 0.14 4.8E-06 58.1 3.6 22 419-441 42-63 (500)
241 2yvu_A Probable adenylyl-sulfa 90.3 0.22 7.6E-06 48.1 4.6 33 420-454 15-47 (186)
242 3umf_A Adenylate kinase; rossm 90.3 0.16 5.6E-06 51.0 3.6 22 420-442 31-52 (217)
243 1e6c_A Shikimate kinase; phosp 90.3 0.18 6.2E-06 47.9 3.8 19 420-438 4-22 (173)
244 2cdn_A Adenylate kinase; phosp 90.2 0.16 5.5E-06 49.8 3.5 18 420-437 22-39 (201)
245 1ex7_A Guanylate kinase; subst 90.2 0.17 6E-06 49.5 3.6 19 419-437 2-20 (186)
246 4a1f_A DNAB helicase, replicat 90.1 0.38 1.3E-05 51.7 6.5 49 419-470 47-95 (338)
247 1zp6_A Hypothetical protein AT 90.1 0.14 4.7E-06 49.7 2.9 18 419-436 10-27 (191)
248 2z43_A DNA repair and recombin 90.1 0.18 6.2E-06 53.9 4.0 50 419-468 108-162 (324)
249 1w5s_A Origin recognition comp 90.1 0.22 7.5E-06 54.4 4.8 25 419-443 51-77 (412)
250 2c95_A Adenylate kinase 1; tra 90.0 0.16 5.6E-06 49.2 3.3 20 419-438 10-29 (196)
251 1zuh_A Shikimate kinase; alpha 89.9 0.18 6.2E-06 47.8 3.5 18 420-437 9-26 (168)
252 1v5w_A DMC1, meiotic recombina 89.9 0.2 7E-06 54.0 4.3 51 419-469 123-178 (343)
253 1gvn_B Zeta; postsegregational 89.9 0.15 5E-06 53.6 3.0 19 420-438 35-53 (287)
254 2jaq_A Deoxyguanosine kinase; 89.9 0.18 6.2E-06 49.2 3.6 19 421-439 3-21 (205)
255 1qf9_A UMP/CMP kinase, protein 89.9 0.17 5.9E-06 48.8 3.4 18 420-437 8-25 (194)
256 2fna_A Conserved hypothetical 89.8 0.23 7.7E-06 52.9 4.6 35 403-441 19-53 (357)
257 1aky_A Adenylate kinase; ATP:A 89.8 0.19 6.4E-06 50.2 3.6 19 420-438 6-24 (220)
258 1zak_A Adenylate kinase; ATP:A 89.7 0.18 6.3E-06 50.3 3.5 20 419-438 6-25 (222)
259 2ze6_A Isopentenyl transferase 89.7 0.18 6.2E-06 51.8 3.5 20 420-439 3-22 (253)
260 1j8m_F SRP54, signal recogniti 89.7 0.43 1.5E-05 50.3 6.5 35 420-456 100-134 (297)
261 2bwj_A Adenylate kinase 5; pho 89.7 0.18 6.2E-06 49.0 3.3 18 420-437 14-31 (199)
262 1y63_A LMAJ004144AAA protein; 89.6 0.19 6.4E-06 48.8 3.4 18 420-437 12-29 (184)
263 2ehv_A Hypothetical protein PH 89.6 0.36 1.2E-05 48.7 5.6 37 419-457 31-68 (251)
264 2xxa_A Signal recognition part 89.6 0.3 1E-05 54.5 5.4 36 420-456 102-137 (433)
265 2pbr_A DTMP kinase, thymidylat 89.6 0.2 6.9E-06 48.4 3.6 22 421-443 3-24 (195)
266 2wwf_A Thymidilate kinase, put 89.6 0.19 6.3E-06 49.6 3.4 22 420-441 12-33 (212)
267 2ce7_A Cell division protein F 89.5 0.19 6.4E-06 56.8 3.7 21 420-441 51-71 (476)
268 1knq_A Gluconate kinase; ALFA/ 89.5 0.21 7.2E-06 47.7 3.6 18 420-437 10-27 (175)
269 1g41_A Heat shock protein HSLU 89.4 0.24 8.2E-06 55.2 4.4 24 419-443 51-74 (444)
270 2qor_A Guanylate kinase; phosp 89.4 0.2 6.7E-06 49.5 3.4 19 419-437 13-31 (204)
271 3a4m_A L-seryl-tRNA(SEC) kinas 89.4 0.33 1.1E-05 50.0 5.2 34 420-455 6-39 (260)
272 1nn5_A Similar to deoxythymidy 89.4 0.2 6.7E-06 49.5 3.4 23 419-441 10-32 (215)
273 2pt5_A Shikimate kinase, SK; a 89.3 0.22 7.5E-06 47.1 3.6 17 421-437 3-19 (168)
274 1ye8_A Protein THEP1, hypothet 89.2 0.22 7.5E-06 48.3 3.5 22 421-443 3-24 (178)
275 1e4v_A Adenylate kinase; trans 89.1 0.21 7.1E-06 49.7 3.4 18 421-438 3-20 (214)
276 3tlx_A Adenylate kinase 2; str 89.1 0.21 7.3E-06 50.9 3.5 18 420-437 31-48 (243)
277 3tau_A Guanylate kinase, GMP k 89.1 0.22 7.5E-06 49.4 3.5 19 419-437 9-27 (208)
278 3bgw_A DNAB-like replicative h 89.0 0.32 1.1E-05 54.4 5.2 49 419-470 198-246 (444)
279 2xb4_A Adenylate kinase; ATP-b 89.0 0.23 7.7E-06 49.9 3.6 18 421-438 3-20 (223)
280 1q57_A DNA primase/helicase; d 89.0 0.22 7.4E-06 56.7 3.8 50 419-470 243-292 (503)
281 2bdt_A BH3686; alpha-beta prot 89.0 0.2 6.7E-06 48.6 3.0 19 420-438 4-22 (189)
282 2vli_A Antibiotic resistance p 88.9 0.15 5.2E-06 49.0 2.1 18 420-437 7-24 (183)
283 2qen_A Walker-type ATPase; unk 88.8 0.31 1E-05 51.8 4.6 36 403-440 18-53 (350)
284 1ak2_A Adenylate kinase isoenz 88.7 0.24 8.1E-06 50.0 3.5 20 420-439 18-37 (233)
285 3m6a_A ATP-dependent protease 88.7 0.31 1.1E-05 56.0 4.9 24 419-443 109-132 (543)
286 1np6_A Molybdopterin-guanine d 88.7 0.43 1.5E-05 46.2 5.1 36 419-456 7-42 (174)
287 2wsm_A Hydrogenase expression/ 88.7 0.22 7.5E-06 49.4 3.2 51 402-455 14-64 (221)
288 2hf9_A Probable hydrogenase ni 88.6 0.27 9.4E-06 48.9 3.9 41 402-442 22-62 (226)
289 1zd8_A GTP:AMP phosphotransfer 88.5 0.19 6.6E-06 50.4 2.6 18 420-437 9-26 (227)
290 2q6t_A DNAB replication FORK h 88.5 0.56 1.9E-05 52.4 6.7 50 419-470 201-250 (444)
291 2vhj_A Ntpase P4, P4; non- hyd 88.4 0.24 8.2E-06 52.8 3.4 22 420-441 125-146 (331)
292 3be4_A Adenylate kinase; malar 88.4 0.25 8.5E-06 49.3 3.3 18 420-437 7-24 (217)
293 1ukz_A Uridylate kinase; trans 88.3 0.22 7.4E-06 48.9 2.8 18 420-437 17-34 (203)
294 1e9r_A Conjugal transfer prote 88.2 0.54 1.9E-05 52.2 6.3 42 419-462 54-95 (437)
295 2oap_1 GSPE-2, type II secreti 88.1 0.39 1.3E-05 54.7 5.1 48 400-452 244-291 (511)
296 3uie_A Adenylyl-sulfate kinase 88.1 0.33 1.1E-05 47.6 4.0 40 400-444 11-50 (200)
297 3isy_A Bsupi, intracellular pr 88.0 4.7 0.00016 36.3 11.1 81 62-153 16-101 (120)
298 2i1q_A DNA repair and recombin 88.0 0.3 1E-05 51.9 3.9 51 419-469 99-164 (322)
299 4ag6_A VIRB4 ATPase, type IV s 88.0 0.46 1.6E-05 52.0 5.5 43 418-462 35-77 (392)
300 1c9k_A COBU, adenosylcobinamid 87.9 0.22 7.5E-06 48.5 2.5 45 421-471 2-46 (180)
301 1yrb_A ATP(GTP)binding protein 87.8 0.4 1.4E-05 48.9 4.5 34 419-455 15-48 (262)
302 2v54_A DTMP kinase, thymidylat 87.7 0.21 7.2E-06 48.8 2.3 18 420-437 6-23 (204)
303 1m7g_A Adenylylsulfate kinase; 87.5 0.43 1.5E-05 47.2 4.5 24 419-443 26-49 (211)
304 2p5t_B PEZT; postsegregational 87.4 0.21 7.1E-06 51.2 2.1 18 420-437 34-51 (253)
305 2bbw_A Adenylate kinase 4, AK4 87.3 0.32 1.1E-05 49.4 3.5 19 419-437 28-46 (246)
306 3e70_C DPA, signal recognition 87.3 0.54 1.8E-05 50.4 5.3 34 420-455 131-164 (328)
307 4edh_A DTMP kinase, thymidylat 87.2 0.9 3.1E-05 45.3 6.7 40 420-461 8-48 (213)
308 1kgd_A CASK, peripheral plasma 87.2 0.3 1E-05 47.2 3.0 19 419-437 6-24 (180)
309 1cke_A CK, MSSA, protein (cyti 87.2 0.34 1.2E-05 48.3 3.5 21 420-441 7-27 (227)
310 3cf2_A TER ATPase, transitiona 87.2 0.2 6.8E-06 60.1 2.0 30 421-455 241-270 (806)
311 3tr0_A Guanylate kinase, GMP k 87.2 0.3 1E-05 47.8 3.0 19 419-437 8-26 (205)
312 1jjv_A Dephospho-COA kinase; P 87.0 0.31 1.1E-05 47.9 3.1 16 421-436 5-20 (206)
313 3u4q_B ATP-dependent helicase/ 87.0 0.13 4.5E-06 64.8 0.3 61 736-799 585-669 (1166)
314 4gp7_A Metallophosphoesterase; 86.9 0.26 8.8E-06 47.3 2.4 18 420-437 11-28 (171)
315 2j41_A Guanylate kinase; GMP, 86.9 0.32 1.1E-05 47.6 3.1 18 419-436 7-24 (207)
316 3a00_A Guanylate kinase, GMP k 86.7 0.37 1.3E-05 46.7 3.4 23 420-443 3-25 (186)
317 3jvv_A Twitching mobility prot 86.7 0.79 2.7E-05 49.6 6.3 43 408-452 114-156 (356)
318 3b9q_A Chloroplast SRP recepto 86.7 0.6 2.1E-05 49.3 5.2 34 420-455 102-135 (302)
319 2dhr_A FTSH; AAA+ protein, hex 86.7 0.29 1E-05 55.5 3.0 21 421-442 67-87 (499)
320 3f9v_A Minichromosome maintena 86.6 0.34 1.2E-05 56.3 3.6 15 420-434 329-343 (595)
321 1rz3_A Hypothetical protein rb 86.2 0.78 2.7E-05 45.0 5.5 33 420-454 24-56 (201)
322 3jux_A Protein translocase sub 85.8 2.7 9.3E-05 49.4 10.4 46 422-469 92-137 (822)
323 2pez_A Bifunctional 3'-phospho 85.8 0.46 1.6E-05 45.5 3.5 24 420-444 7-30 (179)
324 3io3_A DEHA2D07832P; chaperone 85.7 0.87 3E-05 49.1 6.0 47 411-457 11-57 (348)
325 3cf2_A TER ATPase, transitiona 85.6 0.28 9.7E-06 58.7 2.2 19 421-440 514-532 (806)
326 3c8u_A Fructokinase; YP_612366 85.5 0.48 1.6E-05 46.8 3.6 24 420-444 24-47 (208)
327 4eaq_A DTMP kinase, thymidylat 85.4 0.49 1.7E-05 47.8 3.6 31 420-453 28-58 (229)
328 3lv8_A DTMP kinase, thymidylat 85.3 1.3 4.4E-05 45.0 6.7 41 419-461 28-70 (236)
329 1rj9_A FTSY, signal recognitio 85.3 0.66 2.3E-05 49.1 4.7 35 420-456 104-138 (304)
330 3k1j_A LON protease, ATP-depen 85.2 0.79 2.7E-05 53.3 5.7 37 404-443 48-84 (604)
331 1lvg_A Guanylate kinase, GMP k 85.2 0.53 1.8E-05 46.3 3.7 24 419-443 5-28 (198)
332 3b85_A Phosphate starvation-in 85.2 0.88 3E-05 45.2 5.3 39 400-442 7-45 (208)
333 3cio_A ETK, tyrosine-protein k 85.1 1.1 3.8E-05 47.1 6.4 34 420-455 106-140 (299)
334 4tmk_A Protein (thymidylate ki 85.1 1.4 4.7E-05 44.0 6.7 48 420-468 5-53 (213)
335 1svm_A Large T antigen; AAA+ f 85.0 0.77 2.6E-05 50.1 5.2 33 407-439 157-190 (377)
336 1gtv_A TMK, thymidylate kinase 85.0 0.24 8.3E-06 48.8 1.1 23 421-444 3-25 (214)
337 3pxi_A Negative regulator of g 84.9 0.61 2.1E-05 55.8 4.7 23 420-443 523-545 (758)
338 2og2_A Putative signal recogni 84.9 0.81 2.8E-05 49.6 5.2 34 420-455 159-192 (359)
339 3iqw_A Tail-anchored protein t 84.7 0.73 2.5E-05 49.4 4.7 44 412-457 10-53 (334)
340 4a74_A DNA repair and recombin 84.7 0.44 1.5E-05 47.3 2.8 22 419-440 26-47 (231)
341 2qmh_A HPR kinase/phosphorylas 84.7 0.49 1.7E-05 46.8 3.1 21 420-440 36-56 (205)
342 3cmu_A Protein RECA, recombina 84.6 0.51 1.8E-05 61.6 4.0 50 409-460 1415-1467(2050)
343 3v9p_A DTMP kinase, thymidylat 84.6 1.1 3.8E-05 45.2 5.8 24 419-442 26-49 (227)
344 3bs4_A Uncharacterized protein 84.6 1 3.4E-05 46.5 5.5 47 420-469 23-69 (260)
345 2if2_A Dephospho-COA kinase; a 84.6 0.48 1.6E-05 46.4 3.0 16 421-436 4-19 (204)
346 1ls1_A Signal recognition part 84.4 0.94 3.2E-05 47.6 5.4 34 420-455 100-133 (295)
347 3bfv_A CAPA1, CAPB2, membrane 84.4 1.1 3.7E-05 46.5 5.8 34 420-455 84-118 (271)
348 2www_A Methylmalonic aciduria 84.3 0.84 2.9E-05 49.2 5.0 36 419-456 75-110 (349)
349 3qis_A Inositol polyphosphate 84.1 3.2 0.00011 44.9 9.6 91 42-157 28-128 (366)
350 3ake_A Cytidylate kinase; CMP 84.1 0.61 2.1E-05 45.6 3.5 21 420-441 4-24 (208)
351 1uj2_A Uridine-cytidine kinase 83.7 0.54 1.8E-05 48.0 3.0 21 420-441 24-44 (252)
352 2oze_A ORF delta'; para, walke 83.6 1.2 4.2E-05 46.4 5.8 58 404-464 21-83 (298)
353 1ltq_A Polynucleotide kinase; 83.4 0.6 2E-05 48.8 3.3 18 420-437 4-21 (301)
354 2ffh_A Protein (FFH); SRP54, s 83.4 0.88 3E-05 50.4 4.8 34 420-455 100-133 (425)
355 3ug7_A Arsenical pump-driving 83.3 1 3.6E-05 48.4 5.3 36 420-457 28-63 (349)
356 2i3b_A HCR-ntpase, human cance 83.3 0.7 2.4E-05 45.2 3.6 24 420-444 3-26 (189)
357 2yhs_A FTSY, cell division pro 83.2 1 3.4E-05 50.8 5.2 33 420-454 295-327 (503)
358 2qt1_A Nicotinamide riboside k 83.2 0.56 1.9E-05 46.1 2.8 17 420-436 23-39 (207)
359 1ypw_A Transitional endoplasmi 83.1 0.36 1.2E-05 58.2 1.6 23 419-442 239-261 (806)
360 2qm8_A GTPase/ATPase; G protei 83.1 1.1 3.8E-05 48.0 5.4 48 407-456 43-91 (337)
361 3r20_A Cytidylate kinase; stru 83.0 0.7 2.4E-05 46.9 3.5 22 420-442 11-32 (233)
362 1r6b_X CLPA protein; AAA+, N-t 83.0 0.56 1.9E-05 56.1 3.3 23 420-443 490-512 (758)
363 3ney_A 55 kDa erythrocyte memb 82.9 0.7 2.4E-05 45.6 3.4 19 419-437 20-38 (197)
364 2eyu_A Twitching motility prot 82.8 0.72 2.5E-05 47.6 3.6 36 418-454 25-60 (261)
365 1yew_A Particulate methane mon 82.8 3.2 0.00011 44.0 8.3 71 63-141 263-336 (382)
366 2ewv_A Twitching motility prot 82.6 0.68 2.3E-05 50.4 3.5 35 419-454 137-171 (372)
367 2grj_A Dephospho-COA kinase; T 82.5 0.78 2.7E-05 45.0 3.5 19 419-437 13-31 (192)
368 3zq6_A Putative arsenical pump 82.4 1.1 3.8E-05 47.6 5.0 36 420-457 16-51 (324)
369 3crm_A TRNA delta(2)-isopenten 82.0 0.64 2.2E-05 49.6 2.9 20 420-439 7-26 (323)
370 2woo_A ATPase GET3; tail-ancho 81.9 1.3 4.3E-05 47.3 5.2 37 418-456 19-55 (329)
371 3asz_A Uridine kinase; cytidin 81.9 0.79 2.7E-05 45.0 3.4 23 420-443 8-30 (211)
372 1uf9_A TT1252 protein; P-loop, 81.8 0.73 2.5E-05 44.8 3.0 17 420-436 10-26 (203)
373 2p67_A LAO/AO transport system 81.7 1.3 4.3E-05 47.6 5.2 35 419-455 57-91 (341)
374 3cmw_A Protein RECA, recombina 81.7 0.92 3.1E-05 58.5 4.6 48 419-468 384-431 (1706)
375 3lda_A DNA repair protein RAD5 81.5 0.8 2.7E-05 50.4 3.5 40 419-458 179-222 (400)
376 3cmw_A Protein RECA, recombina 81.3 0.96 3.3E-05 58.3 4.6 48 419-468 35-82 (1706)
377 2woj_A ATPase GET3; tail-ancho 81.2 1.5 5.2E-05 47.3 5.6 39 419-457 19-57 (354)
378 3nwj_A ATSK2; P loop, shikimat 81.2 0.99 3.4E-05 46.3 3.9 23 419-442 49-71 (250)
379 2ga8_A Hypothetical 39.9 kDa p 81.1 0.92 3.1E-05 48.9 3.7 20 420-439 26-45 (359)
380 3la6_A Tyrosine-protein kinase 81.0 1.7 5.8E-05 45.4 5.7 32 422-455 97-128 (286)
381 3tqc_A Pantothenate kinase; bi 81.0 1.9 6.5E-05 45.9 6.1 36 420-456 94-130 (321)
382 4akg_A Glutathione S-transfera 80.9 1.3 4.3E-05 59.9 5.7 43 408-456 1259-1301(2695)
383 1vht_A Dephospho-COA kinase; s 80.8 0.87 3E-05 45.1 3.2 17 420-436 6-22 (218)
384 1z6g_A Guanylate kinase; struc 80.6 1 3.4E-05 45.0 3.6 23 419-442 24-46 (218)
385 3lnc_A Guanylate kinase, GMP k 80.4 0.6 2.1E-05 46.8 1.9 19 419-437 28-46 (231)
386 1tf7_A KAIC; homohexamer, hexa 80.1 1.5 5.2E-05 49.9 5.4 47 419-468 282-328 (525)
387 1qvr_A CLPB protein; coiled co 80.1 0.71 2.4E-05 56.1 2.7 23 420-443 590-612 (854)
388 2f6r_A COA synthase, bifunctio 79.6 0.87 3E-05 47.5 2.9 19 420-438 77-95 (281)
389 1ypw_A Transitional endoplasmi 79.6 0.67 2.3E-05 55.9 2.3 24 419-443 512-535 (806)
390 1ihu_A Arsenical pump-driving 79.5 1.6 5.4E-05 50.5 5.3 37 419-457 9-45 (589)
391 1pzn_A RAD51, DNA repair and r 79.4 0.86 2.9E-05 49.2 2.8 23 419-441 132-154 (349)
392 1fx0_B ATP synthase beta chain 79.0 1.3 4.4E-05 49.8 4.1 64 407-470 154-218 (498)
393 4e22_A Cytidylate kinase; P-lo 78.8 1 3.4E-05 46.1 3.0 17 420-436 29-45 (252)
394 3tqf_A HPR(Ser) kinase; transf 78.6 0.98 3.3E-05 43.6 2.6 20 421-440 19-38 (181)
395 3idu_A Uncharacterized protein 78.4 10 0.00036 34.3 9.4 72 58-155 27-98 (127)
396 2obl_A ESCN; ATPase, hydrolase 78.4 1.1 3.8E-05 48.3 3.3 36 406-442 59-94 (347)
397 3gmt_A Adenylate kinase; ssgci 78.4 1.3 4.4E-05 44.8 3.6 20 421-441 11-30 (230)
398 1q3t_A Cytidylate kinase; nucl 78.4 1.2 4.3E-05 44.7 3.5 18 420-437 18-35 (236)
399 2jeo_A Uridine-cytidine kinase 78.4 1.2 4.2E-05 45.0 3.5 23 420-443 27-49 (245)
400 1s96_A Guanylate kinase, GMP k 78.3 1.1 3.9E-05 44.8 3.1 23 419-442 17-39 (219)
401 2ck3_D ATP synthase subunit be 78.2 1.2 4.1E-05 49.8 3.5 64 407-470 142-206 (482)
402 3d3q_A TRNA delta(2)-isopenten 78.2 1.1 3.6E-05 48.2 3.0 21 420-440 9-29 (340)
403 3kta_A Chromosome segregation 78.1 1.1 3.6E-05 42.9 2.8 24 419-443 27-50 (182)
404 1znw_A Guanylate kinase, GMP k 78.1 1.2 3.9E-05 43.9 3.1 24 419-443 21-44 (207)
405 1sq5_A Pantothenate kinase; P- 77.8 1.7 5.9E-05 45.8 4.6 34 420-454 82-116 (308)
406 2ius_A DNA translocase FTSK; n 77.8 1.8 6E-05 49.1 4.9 40 419-458 168-209 (512)
407 3zvl_A Bifunctional polynucleo 77.8 0.8 2.7E-05 50.7 2.0 19 419-437 259-277 (416)
408 1sky_E F1-ATPase, F1-ATP synth 77.8 2.1 7.3E-05 47.8 5.4 39 408-446 141-179 (473)
409 3vkg_A Dynein heavy chain, cyt 77.7 1.3 4.5E-05 60.3 4.3 58 406-469 1294-1352(3245)
410 1z6t_A APAF-1, apoptotic prote 77.6 1.6 5.6E-05 50.2 4.7 38 403-440 130-169 (591)
411 3kjh_A CO dehydrogenase/acetyl 77.5 1.1 3.7E-05 45.0 2.8 34 421-456 3-36 (254)
412 3end_A Light-independent proto 77.5 1.9 6.4E-05 45.2 4.8 34 420-455 43-76 (307)
413 1nij_A Hypothetical protein YJ 77.3 1.4 4.7E-05 46.8 3.6 34 419-456 5-38 (318)
414 3cmu_A Protein RECA, recombina 77.2 1.3 4.6E-05 57.8 4.0 47 419-467 1082-1128(2050)
415 2afh_E Nitrogenase iron protei 77.0 2.1 7.3E-05 44.3 5.0 32 421-454 5-36 (289)
416 3tmk_A Thymidylate kinase; pho 77.0 1.4 4.7E-05 44.2 3.3 22 419-440 6-27 (216)
417 2h92_A Cytidylate kinase; ross 76.9 1.3 4.5E-05 43.7 3.1 17 420-436 5-21 (219)
418 3ld9_A DTMP kinase, thymidylat 76.9 3.3 0.00011 41.6 6.1 43 420-463 23-67 (223)
419 3hjn_A DTMP kinase, thymidylat 76.8 4 0.00014 39.9 6.7 45 421-467 3-48 (197)
420 3aez_A Pantothenate kinase; tr 76.4 2.2 7.6E-05 45.1 4.9 36 420-456 92-128 (312)
421 1byi_A Dethiobiotin synthase; 76.3 2.6 9.1E-05 41.5 5.2 34 421-456 5-38 (224)
422 3a8t_A Adenylate isopentenyltr 76.0 0.92 3.2E-05 48.6 1.8 21 420-440 42-62 (339)
423 1a7j_A Phosphoribulokinase; tr 76.0 1.1 3.8E-05 46.9 2.4 23 420-443 7-29 (290)
424 1odf_A YGR205W, hypothetical 3 75.8 1.6 5.4E-05 45.8 3.5 24 420-444 33-56 (290)
425 1cp2_A CP2, nitrogenase iron p 75.7 2.1 7.3E-05 43.6 4.5 32 421-454 4-35 (269)
426 3foz_A TRNA delta(2)-isopenten 75.6 1.3 4.6E-05 46.8 2.9 21 420-440 12-32 (316)
427 3exa_A TRNA delta(2)-isopenten 75.5 1.2 4.2E-05 47.2 2.5 22 419-440 4-25 (322)
428 2iut_A DNA translocase FTSK; n 74.7 2.4 8.3E-05 48.5 4.9 40 419-458 215-256 (574)
429 2dyk_A GTP-binding protein; GT 74.7 1.6 5.6E-05 40.0 3.0 17 421-437 4-20 (161)
430 1hyq_A MIND, cell division inh 74.6 3 0.0001 42.3 5.2 33 421-455 6-38 (263)
431 3eph_A TRNA isopentenyltransfe 74.6 1.4 4.9E-05 48.3 2.9 22 420-441 4-25 (409)
432 3rfr_A PMOB; membrane, oxidore 74.5 7 0.00024 41.8 7.9 70 63-141 297-368 (419)
433 2ocp_A DGK, deoxyguanosine kin 74.4 1.4 4.7E-05 44.5 2.6 18 420-437 4-21 (241)
434 2f9l_A RAB11B, member RAS onco 73.9 1.7 5.8E-05 42.1 3.0 16 421-436 8-23 (199)
435 3qks_A DNA double-strand break 73.6 2 7E-05 42.2 3.5 25 419-444 24-48 (203)
436 1nrj_B SR-beta, signal recogni 73.6 1.7 5.9E-05 42.5 3.0 19 419-437 13-31 (218)
437 2v9p_A Replication protein E1; 73.5 1.9 6.6E-05 45.5 3.5 42 407-453 114-156 (305)
438 4dzz_A Plasmid partitioning pr 73.2 2.5 8.5E-05 41.0 4.0 33 422-456 6-38 (206)
439 2gza_A Type IV secretion syste 73.2 2.6 9E-05 45.5 4.6 20 419-438 176-195 (361)
440 2ph1_A Nucleotide-binding prot 73.1 2.9 9.9E-05 42.7 4.7 33 421-455 22-54 (262)
441 2xzz_A Protein-glutamine gamma 72.7 8.7 0.0003 33.5 6.9 69 61-153 17-85 (102)
442 2ck3_A ATP synthase subunit al 72.7 4.8 0.00016 45.3 6.6 64 407-470 151-222 (510)
443 1oix_A RAS-related protein RAB 72.5 1.8 6.2E-05 41.7 2.8 16 421-436 32-47 (191)
444 1z2a_A RAS-related protein RAB 72.5 2 6.8E-05 39.7 3.0 17 421-437 8-24 (168)
445 2axn_A 6-phosphofructo-2-kinas 72.5 2 6.8E-05 49.0 3.5 23 420-442 37-59 (520)
446 3q9l_A Septum site-determining 72.5 3 0.0001 42.1 4.6 33 421-455 6-38 (260)
447 1g3q_A MIND ATPase, cell divis 72.5 3.1 0.0001 41.4 4.6 34 421-456 6-39 (237)
448 1kao_A RAP2A; GTP-binding prot 72.3 2 6.9E-05 39.5 3.0 16 421-436 6-21 (167)
449 1so9_A Cytochrome C oxidase as 72.2 4.5 0.00016 38.2 5.3 64 60-140 58-121 (164)
450 1tf7_A KAIC; homohexamer, hexa 72.2 3 0.0001 47.5 4.9 38 419-458 40-78 (525)
451 2ce2_X GTPase HRAS; signaling 72.2 1.9 6.6E-05 39.5 2.8 16 421-436 6-21 (166)
452 2wji_A Ferrous iron transport 72.1 2 7E-05 40.1 3.0 16 421-436 6-21 (165)
453 2ged_A SR-beta, signal recogni 71.6 2.1 7.1E-05 40.9 3.0 18 420-437 50-67 (193)
454 1wms_A RAB-9, RAB9, RAS-relate 70.9 2.2 7.6E-05 39.9 3.0 17 421-437 10-26 (177)
455 2pt7_A CAG-ALFA; ATPase, prote 70.7 2.2 7.6E-05 45.5 3.2 24 419-443 172-195 (330)
456 2dpy_A FLII, flagellum-specifi 70.6 2.6 9E-05 46.8 3.9 38 301-338 27-65 (438)
457 1g16_A RAS-related protein SEC 70.6 2.2 7.5E-05 39.5 2.8 17 421-437 6-22 (170)
458 1ek0_A Protein (GTP-binding pr 70.6 2.3 8E-05 39.2 3.0 16 421-436 6-21 (170)
459 2f1e_A Protein APAG; APAG prot 70.5 50 0.0017 29.8 11.7 95 42-154 7-104 (127)
460 1ky3_A GTP-binding protein YPT 70.3 2.3 8E-05 39.8 3.0 17 421-437 11-27 (182)
461 1p5z_B DCK, deoxycytidine kina 70.3 1.8 6.2E-05 44.3 2.3 17 420-436 26-42 (263)
462 1u8z_A RAS-related protein RAL 70.2 2.4 8.2E-05 39.0 3.0 17 421-437 7-23 (168)
463 1f2t_A RAD50 ABC-ATPase; DNA d 69.9 3.1 0.00011 38.7 3.7 24 419-443 24-47 (149)
464 2x3c_A Toxic extracellular end 69.6 3.5 0.00012 44.2 4.4 72 64-140 36-110 (343)
465 1htw_A HI0065; nucleotide-bind 69.6 2.5 8.7E-05 39.9 3.0 24 419-443 34-57 (158)
466 2erx_A GTP-binding protein DI- 69.4 2.5 8.7E-05 39.0 3.0 16 421-436 6-21 (172)
467 2a5y_B CED-4; apoptosis; HET: 69.3 2.8 9.7E-05 47.9 4.0 21 419-439 153-173 (549)
468 3igf_A ALL4481 protein; two-do 69.1 2.4 8.1E-05 46.1 3.0 34 421-456 5-38 (374)
469 1tq4_A IIGP1, interferon-induc 68.9 2.8 9.7E-05 46.1 3.7 34 405-441 58-91 (413)
470 3ea0_A ATPase, para family; al 68.9 3.5 0.00012 41.1 4.1 35 421-456 8-42 (245)
471 1z0j_A RAB-22, RAS-related pro 68.9 2.6 9E-05 38.9 3.0 17 421-437 9-25 (170)
472 2nzj_A GTP-binding protein REM 68.9 2.6 9E-05 39.2 3.0 16 421-436 7-22 (175)
473 3cwq_A Para family chromosome 68.8 4.1 0.00014 40.1 4.5 38 421-461 4-43 (209)
474 1z08_A RAS-related protein RAB 68.7 2.7 9.3E-05 38.9 3.0 16 421-436 9-24 (170)
475 4hlc_A DTMP kinase, thymidylat 68.6 7.8 0.00027 38.1 6.5 39 420-461 4-43 (205)
476 1jr3_D DNA polymerase III, del 68.6 10 0.00035 40.1 7.9 27 418-444 18-44 (343)
477 1r2q_A RAS-related protein RAB 68.5 2.7 9.4E-05 38.7 3.0 16 421-436 9-24 (170)
478 3q85_A GTP-binding protein REM 68.4 2.8 9.4E-05 38.9 3.0 16 421-436 5-20 (169)
479 1svi_A GTP-binding protein YSX 68.4 2.5 8.4E-05 40.4 2.7 18 420-437 25-42 (195)
480 2lkc_A Translation initiation 68.4 2.8 9.5E-05 39.2 3.1 18 420-437 10-27 (178)
481 1bif_A 6-phosphofructo-2-kinas 68.2 2.8 9.6E-05 47.0 3.5 23 420-442 41-63 (469)
482 1c1y_A RAS-related protein RAP 68.0 2.8 9.7E-05 38.5 3.0 16 421-436 6-21 (167)
483 2zej_A Dardarin, leucine-rich 67.6 2.4 8.3E-05 40.4 2.5 16 421-436 5-20 (184)
484 2y8e_A RAB-protein 6, GH09086P 67.5 2.8 9.4E-05 39.1 2.8 16 421-436 17-32 (179)
485 1pui_A ENGB, probable GTP-bind 67.5 2.2 7.4E-05 41.5 2.1 17 420-436 28-44 (210)
486 3fwy_A Light-independent proto 67.5 5.1 0.00018 42.3 5.2 34 420-455 50-83 (314)
487 2f1r_A Molybdopterin-guanine d 67.5 1.7 5.8E-05 41.7 1.3 24 420-444 4-27 (171)
488 3vr4_A V-type sodium ATPase ca 67.4 3.6 0.00012 46.9 4.1 35 407-441 221-255 (600)
489 1sgw_A Putative ABC transporte 67.1 2.5 8.4E-05 42.2 2.5 23 419-442 36-58 (214)
490 3qf7_A RAD50; ABC-ATPase, ATPa 67.1 3.1 0.00011 44.9 3.5 25 419-444 24-48 (365)
491 2wjg_A FEOB, ferrous iron tran 66.8 3 0.0001 39.5 3.0 17 421-437 10-26 (188)
492 3k9g_A PF-32 protein; ssgcid, 66.8 2.5 8.7E-05 43.1 2.6 41 421-464 31-73 (267)
493 3ez2_A Plasmid partition prote 66.8 3.3 0.00011 45.2 3.6 56 401-456 84-151 (398)
494 2pcj_A ABC transporter, lipopr 66.8 2.3 7.9E-05 42.6 2.2 24 419-443 31-54 (224)
495 2hxs_A RAB-26, RAS-related pro 66.6 3.1 0.00011 38.9 3.0 16 421-436 9-24 (178)
496 1r8s_A ADP-ribosylation factor 66.4 3.2 0.00011 38.2 3.0 17 421-437 3-19 (164)
497 2cxx_A Probable GTP-binding pr 66.3 2.9 9.9E-05 39.6 2.7 17 421-437 4-20 (190)
498 3jt0_A Lamin-B1; structural ge 66.2 7.5 0.00026 36.1 5.3 70 32-137 16-86 (144)
499 1upt_A ARL1, ADP-ribosylation 66.0 3.3 0.00011 38.3 3.0 16 421-436 10-25 (171)
500 3con_A GTPase NRAS; structural 66.0 3.2 0.00011 39.4 3.0 17 421-437 24-40 (190)
No 1
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=5.2e-80 Score=743.57 Aligned_cols=638 Identities=26% Similarity=0.396 Sum_probs=472.0
Q ss_pred CCeEEEEEEEecCCCceeeEEEEEEecCceEEEEEEEEEecchhc-cccCCCCCCCCccccccC----cccccccCCCCc
Q 038509 130 LRTLTIWLSCKPKEMGLHKSVVQFDIGDDRFERMVLLLAEDSVSR-SLASNRPYSRVPRKMQSA----VDEYVASSSPAR 204 (806)
Q Consensus 130 g~~~~~~~~~~~~~~g~~~~~~~~~f~~~~i~r~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 204 (806)
|+++..|+.|+++|+ |.|+|.+.|-..++.++|+++|+. ....++.|+..+ |.+.+ +.+|+...|++.
T Consensus 63 ~~~~~ec~~c~~~n~------f~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~ 135 (800)
T 2wjy_A 63 GETVLECYNCGCRNV------FLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQ-WQPLIQDRCFLSWLVKIPSEQ 135 (800)
T ss_dssp CSCBCCCTTTCCCCT------TTCEEEC-----CCEECCTTTTSSTTC-----------CEESBCSSSBCTTTSCCCCHH
T ss_pred CCceEEEeccCCCce------eeeeceecccCceEEEEecCcccccchhhccCCCHHh-cccccccccccHhhcCCCCHH
Confidence 899999999999999 999999999999999999999987 345688888877 66553 678998988877
Q ss_pred ccchhhccccccccCCCCCCCCh--HHHHHH----hcCCCcchhcCCCCHHhHHHHHHHHHHHHHHHHHHHhhhccccee
Q 038509 205 TTTEARTTKRGSNYKLPEFPIPN--DVRESL----ANKILPQFLVEGLVRKNYFSFFSTLLVMEELRLEEDMRCHSMECV 278 (806)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~~~~p~--~~~~~~----~~~~~~~~l~~~l~~~nY~~~f~~Ll~lEe~~~~~~~~~~~~~~~ 278 (806)
.+.+||..+..++++|+++|.++ +..+.+ ..+.+++++.++.+..+|.+.|.+|+.+|+...........+.++
T Consensus 136 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~ 215 (800)
T 2wjy_A 136 EQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNI 215 (800)
T ss_dssp HHHHSCCCCHHHHHHHHHHHTTCTTCCTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHhhhcCCCHHHHHHHHHHhccCcCcchhhhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccce
Confidence 77788999999999999999743 443333 345678889999999999999999999998643221123334555
Q ss_pred EEEEe----CcEEEEEEcCCCCCCCCCCCCCCEEEEEEcCCCC--CceEEEEEEEeC---CEEEEEeCCcccccccCCce
Q 038509 279 TMRRK----GAHLLALDVPGLAERRPSLVHGDFVFVKLAAANA--DAKKGSIYRVEA---DEVILKFAKEFHTQHRNGSL 349 (806)
Q Consensus 279 ~~~~~----g~~~l~l~vpgl~e~rp~l~~GD~v~v~~~~~~~--~~~~G~v~~v~~---~~v~l~~~~~~~~~~~~~~~ 349 (806)
.++++ ++....+.+|+ ++.++++..||.|.++..+... ..+.|+|+++.. ++|.++++.........+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~ 294 (800)
T 2wjy_A 216 TVRWDLGLNKKRIAYFTLPK-TDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN 294 (800)
T ss_dssp CCEEEECTTCCEEEEECCCB-CCC--CCCTTCEEEEEECSSSSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSC
T ss_pred EEEEEecCCCeeEEEEEecc-ccCCCCCCCCCEEEEEECCCCCCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCC
Confidence 55443 44556678888 8888999999999999875432 247899999986 78999997554433333556
Q ss_pred EEEEEEecchhHHHHHHHHHHhhccCC-------ceecCCCCccc--ccccCCCCC--CCCCCCHHHHHHHHHHHhCCCC
Q 038509 350 YNVSFTYNRINMRRMYQAVQAAENLEP-------NLLFPSQSTKR--RSIKAAPFV--PFNSLNEEQTRSVEIILGCKGA 418 (806)
Q Consensus 350 ~~v~f~~~r~~~~r~~~Al~~~~~l~~-------~~lfp~~~~~~--~~~~~~~~~--~~~~LN~eQ~~AV~~il~~~~~ 418 (806)
|.++|.+++++++||+.|++....... ..++....... ....+..+. ....||++|++||..++. .
T Consensus 295 ~~v~~~~~~~~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~---~ 371 (800)
T 2wjy_A 295 FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ---R 371 (800)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT---S
T ss_pred ceEEEeecCChHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhcc---C
Confidence 999999999999999999976432111 11222211000 000011121 123799999999999986 3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccccEEEcccCCCCCCCCC---
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVP--- 495 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~~i~Rl~~~~r~~~~i~--- 495 (806)
+.++|+||||||||+|+++++.++++. ++.+||+|||||.|||+|.+|+.+.+ ..++|+++..+.....+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~g------~~vvRlg~~~r~~i~~~~~~ 444 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQTG------LKVVRLCAKSREAIDSPVSF 444 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTTT------CCEEECCCGGGGGCCCTTGG
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHhC------cceEeecccchhhhcchhhh
Confidence 568999999999999999999888753 57899999999999999999998631 25788876654211000
Q ss_pred -------------hhhhhhhchhh----------hhcc----CCchhhhccceeeeeeecccccccccCCcCCCCcEEEE
Q 038509 496 -------------TDFIRFCFFEE----------SIFK----CPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFL 548 (806)
Q Consensus 496 -------------~~~~~~~~~~~----------~~~~----~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViI 548 (806)
..+.++....+ ..+. ....+.+..++||++|+.+++. ..+...+||+|||
T Consensus 445 ~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~---~~l~~~~fd~viI 521 (800)
T 2wjy_A 445 LALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGD---PRLAKMQFRSILI 521 (800)
T ss_dssp GBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGGGC---TTTTTCCCSEEEE
T ss_pred hhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhhCC---hhhhcCCCCEEEE
Confidence 01111110000 0000 0112456789999999988764 2345568999999
Q ss_pred ecCCCCcchhHHHHHhhcccCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccCh
Q 038509 549 DEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCH 628 (806)
Q Consensus 549 DEAsQ~~epe~li~L~~l~~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~ 628 (806)
|||+|+++|++++++.. ...++||+|||+||||+|++..+...|+..|+|+|+...+ ....+|.+|||||
T Consensus 522 DEAsQ~~e~~~li~l~~---~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g-------~~~~~L~~qYRm~ 591 (800)
T 2wjy_A 522 DESTQATEPECMVPVVL---GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLG-------IRPIRLQVQYRMH 591 (800)
T ss_dssp TTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTT-------CCCEECCEECSSC
T ss_pred ECCCCCCcHHHHHHHHh---cCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCC-------CCceEehhhcCCC
Confidence 99999999998888763 3458999999999999999999999999999999997632 1245799999999
Q ss_pred hHHHHhhhhhhcCCcccccCCccccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcCC
Q 038509 629 PAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTE 708 (806)
Q Consensus 629 p~I~~~~n~lfY~~~L~~~~~~~~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~ 708 (806)
|+|++|+|++||+|.|........+........++..+.|+.|+++.|.++....+.|+.|..||..|.+++..+++. +
T Consensus 592 p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~-g 670 (800)
T 2wjy_A 592 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA-G 670 (800)
T ss_dssp HHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEECCCCCEECSSBSCEECHHHHHHHHHHHHHHHHT-T
T ss_pred cHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEEcCCceeecCCCCcccCHHHHHHHHHHHHHHHHc-C
Confidence 999999999999999876544322210100112355678999999998877777888999999999999999999887 7
Q ss_pred CCCCeEEEEcCChHHHHHHHHHhhcCC------CCCeEECcccccccceeeEEEEEeccCCCcCcccccccccccCCCCC
Q 038509 709 LNETDIGVITPYRQQVLKIKKVLETWD------MPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPR 782 (806)
Q Consensus 709 ~~~~dIgIItPy~~Qv~~i~~~L~~~~------~~~v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl~~~r 782 (806)
+++++|||||||++|+..|++.|.+.+ ...+.|+|||+|||+|+|+||+|+||++.. .++||+.++|
T Consensus 671 ~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~-------~~~gfl~d~r 743 (800)
T 2wjy_A 671 AKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEH-------QGIGFLNDPR 743 (800)
T ss_dssp CCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCC-------CCCGGGTCHH
T ss_pred CCcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCc-------cccccccCcc
Confidence 889999999999999999999997644 247999999999999999999999998742 4689999999
Q ss_pred ceeecccccccceEEEEccccccC
Q 038509 783 RFNVAITRARSLLIIVGNPHIVCQ 806 (806)
Q Consensus 783 rlnVAlTRAK~~LiIvGn~~~L~k 806 (806)
|||||+||||++|+||||+.+|++
T Consensus 744 rLNVAlTRAk~~LiIvG~~~~l~~ 767 (800)
T 2wjy_A 744 RLNVALTRARYGVIIVGNPKALSK 767 (800)
T ss_dssp HHHHHHTSEEEEEEEEECHHHHTS
T ss_pred hhhhhHHhhhccEEEEECHHHhcc
Confidence 999999999999999999998864
No 2
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=5.5e-78 Score=717.62 Aligned_cols=527 Identities=29% Similarity=0.394 Sum_probs=397.0
Q ss_pred CHHhHHHHHHHHHHHHHHHHH----HHhhh----------cccceeEEEE-----eCcEEEEEEcCCCCCCC--C--CCC
Q 038509 247 VRKNYFSFFSTLLVMEELRLE----EDMRC----------HSMECVTMRR-----KGAHLLALDVPGLAERR--P--SLV 303 (806)
Q Consensus 247 ~~~nY~~~f~~Ll~lEe~~~~----~~~~~----------~~~~~~~~~~-----~g~~~l~l~vpgl~e~r--p--~l~ 303 (806)
+.++|.++|..||.+|+.+.. ..+.. ..+.++.+.. .|..++.|+.+...... | .+.
T Consensus 3 ~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~ 82 (646)
T 4b3f_X 3 AVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFT 82 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCCC
Confidence 468999999999999964211 11111 1112222221 24445667665443322 2 578
Q ss_pred CCCEEEEEEcCC-CCCceEEEEEEEeCCEEEEEeCCcccc--cccCCceEEEEEEecchhHHHHHHHHHHhhccC-----
Q 038509 304 HGDFVFVKLAAA-NADAKKGSIYRVEADEVILKFAKEFHT--QHRNGSLYNVSFTYNRINMRRMYQAVQAAENLE----- 375 (806)
Q Consensus 304 ~GD~v~v~~~~~-~~~~~~G~v~~v~~~~v~l~~~~~~~~--~~~~~~~~~v~f~~~r~~~~r~~~Al~~~~~l~----- 375 (806)
.||.|.++...+ ....++|+|+++..++|.++|+..... .......|.+.+..|+++++||++|++.+....
T Consensus 83 ~Gd~v~~~~~~~~~~~~~~g~v~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~ 162 (646)
T 4b3f_X 83 SGDIVGLYDAANEGSQLATGILTRVTQKSVTVAFDESHDFQLSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPAS 162 (646)
T ss_dssp TTCEEEEEETTTTSCCCEEEEEEEEETTEEEEECC-------CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTH
T ss_pred CCCEEEEEecCCCCCceEEEEEEEEeCCEEEEEECCccccccccCCCCcEEEEEeccchHHHHHHHHHHHhhhcccCchH
Confidence 999999987644 346799999999999999999865332 233456799999999999999999998765321
Q ss_pred --CceecCCCCcccccccCCCCCCCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEE
Q 038509 376 --PNLLFPSQSTKRRSIKAAPFVPFN-SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRIL 452 (806)
Q Consensus 376 --~~~lfp~~~~~~~~~~~~~~~~~~-~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rIL 452 (806)
.++||+..... .........+++ .||++|++||..++..+ ++++|+||||||||+|++++|.++++ .+.+||
T Consensus 163 ~l~~~l~~~~~p~-~~~~~~~~~~~~~~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~--~~~~IL 237 (646)
T 4b3f_X 163 SLIEVLFGRSAPS-PASEIHPLTFFNTCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK--QGLKVL 237 (646)
T ss_dssp HHHHHHTTSSCCC-CCCCCCCCCCSSTTCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEE
T ss_pred HHHHHHcCCCCCC-CccccCcccccCCCCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh--CCCeEE
Confidence 24677654321 111223344566 89999999999999743 46899999999999999999999997 468999
Q ss_pred EEecchHHHHHHHHHHhcccccCcccccEEEcccCCCCCCCCChhhhhhhchh------------------hhhc-----
Q 038509 453 VCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFE------------------ESIF----- 509 (806)
Q Consensus 453 v~apSN~Aad~l~erL~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~------------------~~~~----- 509 (806)
+|||||.|||+|++||... ...++|+++..+..+ .+..++... +..+
T Consensus 238 v~a~TN~AvD~i~erL~~~------~~~ilRlG~~~r~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (646)
T 4b3f_X 238 CCAPSNIAVDNLVERLALC------KQRILRLGHPARLLE----SIQQHSLDAVLARSDSAQIVADIRKDIDQVFVKNKK 307 (646)
T ss_dssp EEESSHHHHHHHHHHHHHT------TCCEEECSCCSSCCH----HHHTTBHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC
T ss_pred EEcCchHHHHHHHHHHHhc------CCceEEecchhhhhh----hhhhhhHHHHHhhchHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999763 236889887766322 211111000 0000
Q ss_pred -------------------------cCCchhhhccceeeeeeecccccccc-cCCcCCCCcEEEEecCCCCcchhHHHHH
Q 038509 510 -------------------------KCPPREALGRYRIIISTYMSSSLLNT-NGIKRGNFSHIFLDEAGQASEPESMIPI 563 (806)
Q Consensus 510 -------------------------~~~~~~~L~~~~Vi~~T~~s~~~l~~-~~~~~~~Fd~ViIDEAsQ~~epe~li~L 563 (806)
.....+.+..++++++|+.+++.... ..+...+||+||||||+|+++|++++||
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL 387 (646)
T 4b3f_X 308 TQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPL 387 (646)
T ss_dssp ------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCSEEEETTGGGSCHHHHTTTG
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCCEEEEcCccccchHHHHhhc
Confidence 00011346678999999988765322 2345678999999999999999999998
Q ss_pred hhcccCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccChhHHHHhhhhhhcCCc
Q 038509 564 ANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGE 643 (806)
Q Consensus 564 ~~l~~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~p~I~~~~n~lfY~~~ 643 (806)
.. ..++||||||+||||++.+..+...|++.|+|+|+.... .+..+.+|..||||||+|++|+|+.||+|+
T Consensus 388 ~~----~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~-----~~~~v~~L~~qYRmhp~I~~f~n~~fY~g~ 458 (646)
T 4b3f_X 388 LK----ARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEY-----GARVVRTLTVQYRMHQAIMRWASDTMYLGQ 458 (646)
T ss_dssp GG----SSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHH-----GGGTEEECCEESSSCHHHHHHHHHHHSTTC
T ss_pred cc----cceEEEcCCccccCceecchhhhhccccchHHHHHHHhc-----CCceeeecccccCCcHHHHhhhHHhhcCCc
Confidence 63 457999999999999999999999999999999997531 234466899999999999999999999999
Q ss_pred ccccCCccccc--cccccccCCCCCCCEEEEeccCcc---cccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEc
Q 038509 644 LLACKDDATSL--SSAKVDIFPNKDFPVLFFGIQGCD---EREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVIT 718 (806)
Q Consensus 644 L~~~~~~~~~~--~~~~~~~lp~~~~pv~f~~~~g~~---~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIIt 718 (806)
|.++.....+. ....+...+..+.|+.|+++.|.. .....+.|+.|..||..|..+++.|++. |++++||||||
T Consensus 459 L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~-gv~~~dIgVIt 537 (646)
T 4b3f_X 459 LTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDA-GVPARDIAVVS 537 (646)
T ss_dssp CEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHH-TCCGGGEEEEE
T ss_pred cccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHHHHhc-CCCcCcEEEEC
Confidence 98876554332 122233445567899999998863 3456678999999999999999999988 79999999999
Q ss_pred CChHHHHHHHHHhhcCCCCCeEECcccccccceeeEEEEEeccCCCcCcccccccccccCCCCCceeecccccccceEEE
Q 038509 719 PYRQQVLKIKKVLETWDMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIV 798 (806)
Q Consensus 719 Py~~Qv~~i~~~L~~~~~~~v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl~~~rrlnVAlTRAK~~LiIv 798 (806)
||++|+..|++.|.+. .++++|+|||+|||+|+|+||+|+|||+.. ..+||+.|+||||||+||||++||||
T Consensus 538 pYraQ~~~l~~~l~~~-~~~i~v~TVd~fQG~E~dvII~S~vrsn~~-------~~iGFl~~~rRlNVAlTRAk~~liiv 609 (646)
T 4b3f_X 538 PYNLQVDLLRQSLVHR-HPELEIKSVDGFQGREKEAVILSFVRSNRK-------GEVGFLAEDRRINVAVTRARRHVAVI 609 (646)
T ss_dssp SCHHHHHHHHHHHTTT-CTTCEEEEGGGGTTCCEEEEEEECCCCCTT-------CCCCSTTCHHHHHHHHHTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHh-CCCCEECChhhcccccCCEEEEEeccCCCC-------CCccccCCcCcEEeEhhhhhCeEEEE
Confidence 9999999999999764 478999999999999999999999999853 57899999999999999999999999
Q ss_pred EccccccC
Q 038509 799 GNPHIVCQ 806 (806)
Q Consensus 799 Gn~~~L~k 806 (806)
||+.+|++
T Consensus 610 Gn~~~l~~ 617 (646)
T 4b3f_X 610 CDSRTVNN 617 (646)
T ss_dssp ECHHHHTT
T ss_pred EchHHhcC
Confidence 99999864
No 3
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-78 Score=732.45 Aligned_cols=634 Identities=26% Similarity=0.389 Sum_probs=467.2
Q ss_pred CCeEEEEEEEecCCCceeeEEEEEEecCceEEEEEEEEEecchhccccCCCCCCCCccccccC----cccccccCCCCcc
Q 038509 130 LRTLTIWLSCKPKEMGLHKSVVQFDIGDDRFERMVLLLAEDSVSRSLASNRPYSRVPRKMQSA----VDEYVASSSPART 205 (806)
Q Consensus 130 g~~~~~~~~~~~~~~g~~~~~~~~~f~~~~i~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 205 (806)
|+++..|+.|+++|+ |.|+|.+.|-..++.++|+++|+.. .++.|+..+ |.+.+ +.+|+..+|++..
T Consensus 68 ~~~~~~c~~c~~~n~------f~lg~~~~~~~~~~~~~cr~~c~~~--~~~~~~~~~-~~~~i~~~~~~~~~~~~p~~~~ 138 (802)
T 2xzl_A 68 GDTVLECYNCGRKNV------FLLGFVSAKSEAVVVLLCRIPCAQT--KNANWDTDQ-WQPLIEDRQLLSWVAEQPTEEE 138 (802)
T ss_dssp CSCBCCCSSSCCCCT------TTEEEEC------CEEEETTTTTTC--C---CCGGG-CEESBCSSSBCTTTSCCCCTTG
T ss_pred CCceeEeecCCCCce------eeeeeeeccCCceEEEEeCCcccch--hhcCCcHhh-CceeecccccchhhccCCCHHH
Confidence 899999999999999 9999999999999999999999885 688888888 66553 7789999999888
Q ss_pred cchhhccccccccCCCCCCC--ChHHHHHHhc----CCCcchhcCCCCHHhHHHHHHHHHHHHHHHHHHHhhhcccceeE
Q 038509 206 TTEARTTKRGSNYKLPEFPI--PNDVRESLAN----KILPQFLVEGLVRKNYFSFFSTLLVMEELRLEEDMRCHSMECVT 279 (806)
Q Consensus 206 ~~~~~~~~~~~~~~l~~~~~--p~~~~~~~~~----~~~~~~l~~~l~~~nY~~~f~~Ll~lEe~~~~~~~~~~~~~~~~ 279 (806)
..+||+.+...+.+|++.|. |+...+.++. +.+++++.++.+..+|.+.|.+||.+|+...........+.++.
T Consensus 139 ~~~~~~~~~~~i~~~e~~w~~~~~~~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~ 218 (802)
T 2xzl_A 139 KLKARLITPSQISKLEAKWRSNKDATINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHIS 218 (802)
T ss_dssp GGGSCCCCHHHHHHHHHHHTTCCCCCC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBC
T ss_pred hhhhcCCCHHHHHHHHHHHhhCcCCchhhhhcccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCce
Confidence 88899999999999999986 7776666664 34677888999999999999999999985322212233345566
Q ss_pred EEEe----CcEEEEEEcCCCCCCCCCCCCCCEEEEEEcCCCC--CceEEEEEEEeC---CEEEEEeCCcccc-cccCCce
Q 038509 280 MRRK----GAHLLALDVPGLAERRPSLVHGDFVFVKLAAANA--DAKKGSIYRVEA---DEVILKFAKEFHT-QHRNGSL 349 (806)
Q Consensus 280 ~~~~----g~~~l~l~vpgl~e~rp~l~~GD~v~v~~~~~~~--~~~~G~v~~v~~---~~v~l~~~~~~~~-~~~~~~~ 349 (806)
+.+. +..+..+.+|++++.++++..||.|+++..+... ..+.|+|+++.. ++|.++++..... .......
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD~v~l~~~~~~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~ 298 (802)
T 2xzl_A 219 VSWSLALNNRHLASFTLSTFESNELKVAIGDEMILWYSGMQHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTG 298 (802)
T ss_dssp EEEEECTTSCEEEEEC---------CCCTTCEEEEEECSSSSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSS
T ss_pred EeeeccCCCeEEEEEEecccccCCCCCCCCCEEEEEECCCCCCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCC
Confidence 6543 4566788899999999999999999999765432 347799999974 6799999754322 2122445
Q ss_pred EEEEEEecchhHHHHHHHHHHhhccC---Cc----eecCCCCcccc--cccCCCC--CCCCCCCHHHHHHHHHHHhCCCC
Q 038509 350 YNVSFTYNRINMRRMYQAVQAAENLE---PN----LLFPSQSTKRR--SIKAAPF--VPFNSLNEEQTRSVEIILGCKGA 418 (806)
Q Consensus 350 ~~v~f~~~r~~~~r~~~Al~~~~~l~---~~----~lfp~~~~~~~--~~~~~~~--~~~~~LN~eQ~~AV~~il~~~~~ 418 (806)
|.++|.+++++++||+.|++.+.... .. .++........ ...+..+ ..+..||++|++||..++. .
T Consensus 299 ~~v~~~~~~~~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~---~ 375 (802)
T 2xzl_A 299 FTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQ---R 375 (802)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTT---C
T ss_pred eEEEEEecCchHHHHHHHHHHHHhccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhc---C
Confidence 99999999999999999997653111 11 12221110000 0001111 1233899999999999986 3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccccEEEcccCCCCCCCCChhh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDF 498 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~ 498 (806)
++++|+||||||||+|+++++.++++. ++.+||+|||||.|||+|.+||.+.+ ..++|+++..+.. +....
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~g------~~ilR~g~~~r~~--i~~~~ 446 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDLG------LKVVRLTAKSRED--VESSV 446 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHTT------CCEEECCCGGGTT--SCCTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhhC------ccEEeecccchhh--hcchh
Confidence 568999999999999999999988764 56899999999999999999998631 2578887654421 11100
Q ss_pred -----------------hhhhchhh----------hhcc----CCchhhhccceeeeeeecccccccccCCcCCCCcEEE
Q 038509 499 -----------------IRFCFFEE----------SIFK----CPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIF 547 (806)
Q Consensus 499 -----------------~~~~~~~~----------~~~~----~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~Vi 547 (806)
..+..... ..+. ......+..++||++|+.+++. ..+.. +||+||
T Consensus 447 ~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~---~~L~~-~fd~vi 522 (802)
T 2xzl_A 447 SNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD---KRLDT-KFRTVL 522 (802)
T ss_dssp GGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC---TTCCS-CCSEEE
T ss_pred hhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh---HHHhc-cCCEEE
Confidence 00000000 0000 0112456789999999988763 23333 899999
Q ss_pred EecCCCCcchhHHHHHhhcccCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccC
Q 038509 548 LDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRC 627 (806)
Q Consensus 548 IDEAsQ~~epe~li~L~~l~~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs 627 (806)
||||+|+++|+.++++.. ...+++|+|||+||||++++..+...|++.|+|+|+...+ .....|.+||||
T Consensus 523 IDEA~q~~e~~~li~l~~---~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~-------~~~~~L~~qYRm 592 (802)
T 2xzl_A 523 IDESTQASEPECLIPIVK---GAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLG-------HVPIRLEVQYRM 592 (802)
T ss_dssp ETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTT-------CCCEECCEECSS
T ss_pred EECccccchHHHHHHHHh---CCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcC-------CCceEeeeecCC
Confidence 999999999998888763 3458999999999999999999888999999999997632 124579999999
Q ss_pred hhHHHHhhhhhhcCCcccccCCccccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcC
Q 038509 628 HPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENT 707 (806)
Q Consensus 628 ~p~I~~~~n~lfY~~~L~~~~~~~~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~ 707 (806)
||+|++|+|++||+|+|........+........++..+.|++|+++.|.++....+.|+.|..||..|++++..|++.
T Consensus 593 ~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~- 671 (802)
T 2xzl_A 593 NPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWANYGREEISANGTSFLNRIEAMNCERIITKLFRD- 671 (802)
T ss_dssp CHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEECCCCCEECTTSSSEECHHHHHHHHHHHHHHHHT-
T ss_pred ChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEEcCCceeecCCCCCcCCHHHHHHHHHHHHHHHHc-
Confidence 9999999999999999986554322210000112355678999999998887777888999999999999999999887
Q ss_pred CCCCCeEEEEcCChHHHHHHHHHhhcCCC------CCeEECcccccccceeeEEEEEeccCCCcCcccccccccccCCCC
Q 038509 708 ELNETDIGVITPYRQQVLKIKKVLETWDM------PDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNP 781 (806)
Q Consensus 708 ~~~~~dIgIItPy~~Qv~~i~~~L~~~~~------~~v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl~~~ 781 (806)
++++++|||||||++|+..|++.|.+.+. ..+.|+|||+|||+|+|+||+|+||++.. ..+||+.++
T Consensus 672 g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~-------~~~gfl~d~ 744 (802)
T 2xzl_A 672 GVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQ-------QAIGFLRDP 744 (802)
T ss_dssp TCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTT-------CCCGGGGCH
T ss_pred CCCcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCC-------CCcccccCc
Confidence 78999999999999999999999976542 47999999999999999999999998743 468999999
Q ss_pred CceeecccccccceEEEEccccccC
Q 038509 782 RRFNVAITRARSLLIIVGNPHIVCQ 806 (806)
Q Consensus 782 rrlnVAlTRAK~~LiIvGn~~~L~k 806 (806)
||||||+||||.+|+||||+.+|++
T Consensus 745 rrLNVAlTRAk~~LiIvg~~~~l~~ 769 (802)
T 2xzl_A 745 RRLNVGLTRAKYGLVILGNPRSLAR 769 (802)
T ss_dssp HHHHHHHSSEEEEEEEEECHHHHTT
T ss_pred cceeeeHhhhhCeEEEEECHHHhcc
Confidence 9999999999999999999998864
No 4
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=2.3e-71 Score=657.07 Aligned_cols=534 Identities=29% Similarity=0.444 Sum_probs=392.0
Q ss_pred hhcCCCCHHhHHHHHHHHHHHHHHHHHHHhhhcccceeEEEEe----CcEEEEEEcCCCCCCCCCCCCCCEEEEEEcCCC
Q 038509 241 FLVEGLVRKNYFSFFSTLLVMEELRLEEDMRCHSMECVTMRRK----GAHLLALDVPGLAERRPSLVHGDFVFVKLAAAN 316 (806)
Q Consensus 241 ~l~~~l~~~nY~~~f~~Ll~lEe~~~~~~~~~~~~~~~~~~~~----g~~~l~l~vpgl~e~rp~l~~GD~v~v~~~~~~ 316 (806)
++..+-+..+|.++|.+||.+|+.+...........++.++++ +.....+.+|+ ++.++++..||.|.++..+..
T Consensus 2 ~~~~~~~~~~y~~~~~~ll~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Gd~v~l~~~~~~ 80 (624)
T 2gk6_A 2 LGSRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPK-TDSDMRLMQGDEICLRYKGDL 80 (624)
T ss_dssp -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECEEEEECTTSCEEEEEECC--------CCTTCEEEEEECSSS
T ss_pred cCCccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccCceEEeeecCCCceEEEEEecc-cccCCcCCCCCEEEEEECCCC
Confidence 4567789999999999999999854322222334456666543 44566788888 788899999999999977543
Q ss_pred C--CceEEEEEEEeC---CEEEEEeCCcccccccCCceEEEEEEecchhHHHHHHHHHHhhccC---C----ceecCCCC
Q 038509 317 A--DAKKGSIYRVEA---DEVILKFAKEFHTQHRNGSLYNVSFTYNRINMRRMYQAVQAAENLE---P----NLLFPSQS 384 (806)
Q Consensus 317 ~--~~~~G~v~~v~~---~~v~l~~~~~~~~~~~~~~~~~v~f~~~r~~~~r~~~Al~~~~~l~---~----~~lfp~~~ 384 (806)
. ..+.|+|+++.. ++|.++|+.....+...+..|.++|.+++++++||+.||+.+.... . ..++....
T Consensus 81 ~~~~~~~g~v~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~ 160 (624)
T 2gk6_A 81 APLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEV 160 (624)
T ss_dssp SCCCEEEEEEEECSCSSCSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCC
T ss_pred CCCcEEEEEEEEecCCCCCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCC
Confidence 2 347899999975 7999999755333322345799999999999999999997653211 1 12222211
Q ss_pred ccc--ccccCCCC--CCCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHH
Q 038509 385 TKR--RSIKAAPF--VPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSA 460 (806)
Q Consensus 385 ~~~--~~~~~~~~--~~~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~A 460 (806)
... ....+..+ ..+..||++|++||..++. .+.++|+||||||||+|+++++.++++. ++.+||+|||||.|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ln~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A 236 (624)
T 2gk6_A 161 EDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIA 236 (624)
T ss_dssp CCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHH
T ss_pred ccccccccCcccccccccCCCCHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHH
Confidence 000 00001112 1223899999999999986 3568999999999999999999888753 57899999999999
Q ss_pred HHHHHHHHhcccccCcccccEEEcccCCCCCCCCC----------------hhhhhhhchh----------hhhcc----
Q 038509 461 ADHMLERLISNEVAGIKENEILRLNATSRPYEDVP----------------TDFIRFCFFE----------ESIFK---- 510 (806)
Q Consensus 461 ad~l~erL~~~~~~~~~~~~i~Rl~~~~r~~~~i~----------------~~~~~~~~~~----------~~~~~---- 510 (806)
||+|.+|+.+.+ ..++|+++..+..-..+ ..+..+.... ...+.
T Consensus 237 ~~~l~~~l~~~~------~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (624)
T 2gk6_A 237 VDQLTEKIHQTG------LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR 310 (624)
T ss_dssp HHHHHHHHHTTT------CCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC------CeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 999999998631 25788877554210000 0111110000 00000
Q ss_pred CCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhHHHHHhhcccCCCEEEEecCCCCCCceeecch
Q 038509 511 CPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKD 590 (806)
Q Consensus 511 ~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~li~L~~l~~~~~~lVLvGDp~QL~PvI~s~~ 590 (806)
......+..++||++||.+++. ..+...+||+||||||+|+++|++++++.. ...++||+|||+||||+++++.
T Consensus 311 ~~~~~~l~~~~vI~~T~~~~~~---~~l~~~~fd~viIDEAsQ~~e~~~li~l~~---~~~~~ilvGD~~QL~p~v~~~~ 384 (624)
T 2gk6_A 311 TAERELLMNADVICCTCVGAGD---PRLAKMQFRSILIDESTQATEPECMVPVVL---GAKQLILVGDHCQLGPVVMCKK 384 (624)
T ss_dssp HHHHHHHHTCSEEEEETGGGGC---GGGTTCCCSEEEETTGGGSCHHHHHHHHTT---TBSEEEEEECTTSCCCCCSCHH
T ss_pred HHHHHHHhcCCEEEEcChhhcc---hhhhcCCCCEEEEecccccCcHHHHHHHHh---cCCeEEEecChhccCCeeecHH
Confidence 0112457789999999988764 223456899999999999999998888864 2358999999999999999999
Q ss_pred hhhcCCCccHHHHHhhcccccCCCccceecccccccChhHHHHhhhhhhcCCcccccCCccccccccccccCCCCCCCEE
Q 038509 591 AETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVL 670 (806)
Q Consensus 591 a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~p~I~~~~n~lfY~~~L~~~~~~~~~~~~~~~~~lp~~~~pv~ 670 (806)
+...|+..|+|+|+...+ ....+|.+||||||+|++|+|++||+|.|........+........++..+.|++
T Consensus 385 ~~~~gl~~Slferl~~~~-------~~~~~L~~qYR~~~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~ 457 (624)
T 2gk6_A 385 AAKAGLSQSLFERLVVLG-------IRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMF 457 (624)
T ss_dssp HHHHTTTSCHHHHHHHTT-------CCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEE
T ss_pred HHHcCCchhHHHHHHhcC-------CCcEEehhhhCcChhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEE
Confidence 888999999999997642 1235799999999999999999999999876544322211100123455678999
Q ss_pred EEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHhhcCCC------CCeEECcc
Q 038509 671 FFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDM------PDVKVGTV 744 (806)
Q Consensus 671 f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPy~~Qv~~i~~~L~~~~~------~~v~V~TV 744 (806)
|+++.|.++....+.|+.|+.||..|.+++..+++. ++++++|||||||++|+..|++.|.+.+. ..+.|+||
T Consensus 458 ~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~-g~~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TV 536 (624)
T 2gk6_A 458 FYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKA-GAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASV 536 (624)
T ss_dssp EEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTT-TCCGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECH
T ss_pred EEEcCCcceecCCCCCccCHHHHHHHHHHHHHHHHc-CCCCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEech
Confidence 999999887777888999999999999999999876 78999999999999999999999976543 46899999
Q ss_pred cccccceeeEEEEEeccCCCcCcccccccccccCCCCCceeecccccccceEEEEccccccC
Q 038509 745 EQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIVCQ 806 (806)
Q Consensus 745 d~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl~~~rrlnVAlTRAK~~LiIvGn~~~L~k 806 (806)
|+|||+|+|+||+|+||++.. .++||+.++||||||+||||++|+||||+.+|++
T Consensus 537 d~fQG~E~dvVIls~vrs~~~-------~~~gfl~~~~rlnVAlTRAk~~L~ivg~~~~l~~ 591 (624)
T 2gk6_A 537 DAFQGREKDFIILSCVRANEH-------QGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK 591 (624)
T ss_dssp HHHTTCCEEEEEEEECC-------------CCTTTCHHHHHHHTTSEEEEEEEEECHHHHTT
T ss_pred hhcCCcccCEEEEEeecCCCC-------CCccccCCcceeeeehhhhhCcEEEEECHHHHcc
Confidence 999999999999999999742 4689999999999999999999999999998864
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.98 E-value=2.3e-32 Score=325.48 Aligned_cols=286 Identities=21% Similarity=0.242 Sum_probs=177.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHhcccc---
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR--EHSRILVCAASNSAADHMLERLISNEV--- 473 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~--~~~rILv~apSN~Aad~l~erL~~~~~--- 473 (806)
..||++|++||.+ ..+|++|.||||||||+|++++|.+++... ++.+||++||||+|+++|.+|+.+...
T Consensus 8 ~~Ln~~Q~~av~~-----~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~ 82 (647)
T 3lfu_A 8 DSLNDKQREAVAA-----PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQ 82 (647)
T ss_dssp TTCCHHHHHHHTC-----CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCC
T ss_pred hcCCHHHHHHHhC-----CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcccc
Confidence 4799999999973 236799999999999999999999999853 568999999999999999999986311
Q ss_pred cCcccccEEEcccC----CCCCCCCChh------hhhhhchhhhhc--c-----CCchhh---h---cccee----eee-
Q 038509 474 AGIKENEILRLNAT----SRPYEDVPTD------FIRFCFFEESIF--K-----CPPREA---L---GRYRI----IIS- 525 (806)
Q Consensus 474 ~~~~~~~i~Rl~~~----~r~~~~i~~~------~~~~~~~~~~~~--~-----~~~~~~---L---~~~~V----i~~- 525 (806)
..+...++++++.. .......++. ........+... . .+.... + ....+ +..
T Consensus 83 ~~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~ 162 (647)
T 3lfu_A 83 GGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSY 162 (647)
T ss_dssp TTCEEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC---
T ss_pred CCcEEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhc
Confidence 11222233333210 0000001110 001111000000 0 000000 0 00000 000
Q ss_pred -------------------------eec-----ccccccc-cC---CcCCCCcEEEEecCCCCcchhHHHHHhhcccCCC
Q 038509 526 -------------------------TYM-----SSSLLNT-NG---IKRGNFSHIFLDEAGQASEPESMIPIANLCTKQT 571 (806)
Q Consensus 526 -------------------------T~~-----s~~~l~~-~~---~~~~~Fd~ViIDEAsQ~~epe~li~L~~l~~~~~ 571 (806)
+.. ....+.. .. ....+|+||+|||+ |+++|.++..|..++..+.
T Consensus 163 ~~~~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~-QD~~~~q~~ll~~l~~~~~ 241 (647)
T 3lfu_A 163 GNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEF-QDTNNIQYAWIRLLAGDTG 241 (647)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSG-GGCCHHHHHHHHHHHTTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECc-ccCCHHHHHHHHHHhcCCC
Confidence 000 0000000 00 00136999999999 9999999999988887778
Q ss_pred EEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccChhHHHHhhhhhhcCCcccccCCcc
Q 038509 572 VVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDA 651 (806)
Q Consensus 572 ~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~p~I~~~~n~lfY~~~L~~~~~~~ 651 (806)
++++|||++| .||+++++. ...+.++... + .......|..||||+++|++++|.+|+.+.......
T Consensus 242 ~l~~vGD~~Q---sIy~frga~----~~~~~~~~~~--~---~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~-- 307 (647)
T 3lfu_A 242 KVMIVGDDDQ---SIYGWRGAQ----VENIQRFLND--F---PGAETIRLEQNYRSTSNILSAANALIENNNGRLGKK-- 307 (647)
T ss_dssp EEEEEECGGG---CCCGGGTCC----TTHHHHHHHH--C---TTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC--
T ss_pred EEEEEcCchh---hhccccCCC----HHHHHHHHHh--C---CCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCc--
Confidence 9999999999 999998654 4555555332 1 123456799999999999999999998654321110
Q ss_pred ccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCChHHH
Q 038509 652 TSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQV 724 (806)
Q Consensus 652 ~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPy~~Qv 724 (806)
.+.. ...+.++.++.... ...|+..|+..|.+++.. |++++||+||+|++.|.
T Consensus 308 ------~~~~-~~~~~~~~~~~~~~------------~~~e~~~ia~~I~~l~~~-g~~~~diaVL~r~~~~~ 360 (647)
T 3lfu_A 308 ------LWTD-GADGEPISLYCAFN------------ELDEARFVVNRIKTWQDN-GGALAECAILYRSNAQS 360 (647)
T ss_dssp ------CBCS-SCCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHHT-TCCGGGEEEEESSGGGH
T ss_pred ------cccC-CCCCCceEEEecCC------------hHHHHHHHHHHHHHHHHc-CCCccCEEEEEeCchhH
Confidence 0111 11233455544322 245999999999999887 79999999999997664
No 6
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.97 E-value=7.5e-31 Score=315.68 Aligned_cols=287 Identities=21% Similarity=0.223 Sum_probs=176.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC--CCCeEEEEecchHHHHHHHHHHhcccc---
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR--EHSRILVCAASNSAADHMLERLISNEV--- 473 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~--~~~rILv~apSN~Aad~l~erL~~~~~--- 473 (806)
..||++|++||.+. .+|++|.|+||||||+||+++|++++... ++.+||++||||+||++|.+|+.+.-.
T Consensus 10 ~~Ln~~Q~~av~~~-----~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~ 84 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT-----EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAA 84 (724)
T ss_dssp TTSCHHHHHHHHCC-----SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGG
T ss_pred hhCCHHHHHHHhCC-----CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccc
Confidence 47999999999751 36799999999999999999999999753 568999999999999999999976311
Q ss_pred cCcccccEEEcccC-----------CCCCCCCChh----h-hhhh---chhhhhc--------------cCCchhhh---
Q 038509 474 AGIKENEILRLNAT-----------SRPYEDVPTD----F-IRFC---FFEESIF--------------KCPPREAL--- 517 (806)
Q Consensus 474 ~~~~~~~i~Rl~~~-----------~r~~~~i~~~----~-~~~~---~~~~~~~--------------~~~~~~~L--- 517 (806)
..+...++++++.. ...+.-+... + .... ..+...+ .....+.+
T Consensus 85 ~~~~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~ 164 (724)
T 1pjr_A 85 EDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKR 164 (724)
T ss_dssp TTSEEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHTTC
T ss_pred cCcEEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcCCCHHHHHHh
Confidence 11222333332210 0000000000 0 0000 0000000 00000000
Q ss_pred --------------------cccee------eeeeecccccccc-cC---CcCCCCcEEEEecCCCCcchhHHHHHhhcc
Q 038509 518 --------------------GRYRI------IISTYMSSSLLNT-NG---IKRGNFSHIFLDEAGQASEPESMIPIANLC 567 (806)
Q Consensus 518 --------------------~~~~V------i~~T~~s~~~l~~-~~---~~~~~Fd~ViIDEAsQ~~epe~li~L~~l~ 567 (806)
..... +.-+. ..+.. .. ....+|+||+|||+ ||+++.++..|..++
T Consensus 165 ~~~~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~---~ll~~~~~v~~~~~~rf~~IlVDEf-QDtn~~Q~~ll~~L~ 240 (724)
T 1pjr_A 165 ASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTI---QLFDRVPDVLHYYQYKFQYIHIDEY-QDTNRAQYTLVKKLA 240 (724)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHH---HHHHHCHHHHHHHHHHCSEEEESSG-GGCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHhhCHHHHHHHHhhCCEEEEEhH-hcCCHHHHHHHHHHH
Confidence 00000 00000 00000 00 01247999999999 999999999998887
Q ss_pred cCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccChhHHHHhhhhhhcCCccccc
Q 038509 568 TKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLAC 647 (806)
Q Consensus 568 ~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~p~I~~~~n~lfY~~~L~~~ 647 (806)
....++++|||++| .||++++++. ..+.++... | ....+..|.+||||++.|++++|.++.++.....
T Consensus 241 ~~~~~l~vVGD~~Q---sIY~fRGA~~----~~~~~f~~~--~---~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~ 308 (724)
T 1pjr_A 241 ERFQNICAVGDADQ---SIYRWRGADI----QNILSFERD--Y---PNAKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 (724)
T ss_dssp TTTCCEEEEECGGG---CCCGGGTCCT----HHHHTHHHH--S---TTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCC
T ss_pred cCCCeEEEEECchh---hcccccCCCH----HHHHHHHHH--C---CCCcEEECCCCCCCCHHHHHHHHHHHHhCccccC
Confidence 66668999999999 9999986543 344333221 1 1233568999999999999999999975532111
Q ss_pred CCccccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCChHHHHHH
Q 038509 648 KDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKI 727 (806)
Q Consensus 648 ~~~~~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPy~~Qv~~i 727 (806)
. ..|... ..+.++.++.... ...|+..|+..|.+++...|++++||+||++.+.|...+
T Consensus 309 k--------~l~~~~-~~g~~i~~~~~~~------------~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~l 367 (724)
T 1pjr_A 309 K--------RIWTEN-PEGKPILYYEAMN------------EADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVM 367 (724)
T ss_dssp C--------CCBCSS-CCCCCEEEEEEEE------------HHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHH
T ss_pred c--------cccccc-CCCCceEEEecCC------------HHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHHH
Confidence 0 011111 1233455543321 245899999999999874578999999999988765443
No 7
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.96 E-value=1.5e-29 Score=295.18 Aligned_cols=286 Identities=23% Similarity=0.252 Sum_probs=185.4
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.||++|++|+..++. .+.++|+||||||||+++..++..+.. .+.+|+++|||+.||+.|.+++.. ...
T Consensus 189 ~L~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~~------~a~ 257 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAES--LGLEVGLCAPTGKAARRLGEVTGR------TAS 257 (574)
T ss_dssp TCCHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTS------CEE
T ss_pred CCCHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEecCcHHHHHHhHhhhcc------cHH
Confidence 799999999999886 356899999999999998887766554 568999999999999999887642 122
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhH
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPES 559 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~ 559 (806)
+++++..... ..+ .........+|+||||||++...+ .
T Consensus 258 Tih~ll~~~~-----------------~~~------------------------~~~~~~~~~~dvlIIDEasml~~~-~ 295 (574)
T 3e1s_A 258 TVHRLLGYGP-----------------QGF------------------------RHNHLEPAPYDLLIVDEVSMMGDA-L 295 (574)
T ss_dssp EHHHHTTEET-----------------TEE------------------------SCSSSSCCSCSEEEECCGGGCCHH-H
T ss_pred HHHHHHcCCc-----------------chh------------------------hhhhcccccCCEEEEcCccCCCHH-H
Confidence 3333321100 000 001112346899999999766655 5
Q ss_pred HHHHhhcccCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccCh--hHHHHhhhh
Q 038509 560 MIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCH--PAILDLPSK 637 (806)
Q Consensus 560 li~L~~l~~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~--p~I~~~~n~ 637 (806)
+..|......+.++|++||+.||+|+.. + +.|..+.. ...+..|+++||++ +.|..+++.
T Consensus 296 ~~~Ll~~~~~~~~lilvGD~~QL~~v~~---------g-~~~~~l~~--------~~~~~~L~~~~R~~~~s~I~~~a~~ 357 (574)
T 3e1s_A 296 MLSLLAAVPPGARVLLVGDTDQLPPVDA---------G-LPLLALAQ--------AAPTIKLTQVYRQAAKNPIIQAAHG 357 (574)
T ss_dssp HHHHHTTSCTTCEEEEEECTTSCCCSSS---------C-CHHHHHHH--------HSCEEECCCCCHHHHTCHHHHHHHH
T ss_pred HHHHHHhCcCCCEEEEEecccccCCccC---------C-cHHHHHHh--------cCCEEEcceeEeCCCccHHHHHHHH
Confidence 5555545556789999999999999832 2 35555544 12356899999998 669999876
Q ss_pred hhcCCcccccCCccccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCC-CeEEE
Q 038509 638 LFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNE-TDIGV 716 (806)
Q Consensus 638 lfY~~~L~~~~~~~~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~~~~-~dIgI 716 (806)
+ ..|.+.... ..+.|+.....+. .+..+.+.+. ++.+ .++.|
T Consensus 358 i-~~g~~~~~~------------------~d~~~~~~~~~~~------------~~~~i~~~~~------~~~~~~~~~V 400 (574)
T 3e1s_A 358 L-LHGEAPAWG------------------DKRLNLTEIEPDG------------GARRVALMVR------ELGGPGAVQV 400 (574)
T ss_dssp H-HTTCCCCCC------------------BTTEEEEECCSTT------------CHHHHHHHHH------HTTSGGGCEE
T ss_pred H-hCCCCcccC------------------CCeEEEeCCCHHH------------HHHHHHHHHh------ccCcccCeEE
Confidence 4 344332110 0122222111110 1222333332 2334 67778
Q ss_pred EcCChHH---HHHHH----HHhhcCC------------------------------------------------------
Q 038509 717 ITPYRQQ---VLKIK----KVLETWD------------------------------------------------------ 735 (806)
Q Consensus 717 ItPy~~Q---v~~i~----~~L~~~~------------------------------------------------------ 735 (806)
++|.+.. +..+. ..|...+
T Consensus 401 L~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~v~fdg~~v~~ 480 (574)
T 3e1s_A 401 LTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLTVDFDGNVVEL 480 (574)
T ss_dssp EESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEEEEETTEEEEE
T ss_pred EEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEEEEECCeEEEE
Confidence 8777654 33333 3321100
Q ss_pred ----CCCe---EECcccccccceeeEEEEEeccCCCcCcccccccccccCCCCCceeecccccccceEEEEcccccc
Q 038509 736 ----MPDV---KVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVGNPHIVC 805 (806)
Q Consensus 736 ----~~~v---~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl~~~rrlnVAlTRAK~~LiIvGn~~~L~ 805 (806)
++.+ .+.|||+|||+|+|.||+....+. ..+.+++++||||||||+.|+|+|++..|.
T Consensus 481 ~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~------------~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 481 TGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH------------MPMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp CGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG------------GGGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred chHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc------------ccccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 0001 135999999999999999876542 234678999999999999999999988764
No 8
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.96 E-value=5.2e-29 Score=284.57 Aligned_cols=188 Identities=18% Similarity=0.248 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHHHHhC--CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccC
Q 038509 398 FNSLNEEQTRSVEIILGC--KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAG 475 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~--~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~ 475 (806)
+..||++|++|+..++.. .+.++++|.||||||||+++..++..+.... ..+|+++||||.||++|.+++..
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~~~----- 96 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG-ETGIILAAPTHAAKKILSKLSGK----- 96 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHHSS-----
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CceEEEecCcHHHHHHHHhhhcc-----
Confidence 348999999999988642 1124799999999999999998888887643 35899999999999999998842
Q ss_pred cccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCc
Q 038509 476 IKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQAS 555 (806)
Q Consensus 476 ~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~ 555 (806)
...+++++..... .... ....+ .. ........+++|||||| |++
T Consensus 97 -~~~T~h~~~~~~~-----------------~~~~--------~~~~~-~~--------~~~~~~~~~~~iiiDE~-~~~ 140 (459)
T 3upu_A 97 -EASTIHSILKINP-----------------VTYE--------ENVLF-EQ--------KEVPDLAKCRVLICDEV-SMY 140 (459)
T ss_dssp -CEEEHHHHHTEEE-----------------EECS--------SCEEE-EE--------CSCCCCSSCSEEEESCG-GGC
T ss_pred -chhhHHHHhccCc-----------------cccc--------ccchh-cc--------cccccccCCCEEEEECc-hhC
Confidence 1223332221000 0000 00000 00 01112346899999999 666
Q ss_pred chhHHHHHhhcccCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccChhHHHHhh
Q 038509 556 EPESMIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLP 635 (806)
Q Consensus 556 epe~li~L~~l~~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~p~I~~~~ 635 (806)
.+.++..|......+.+++++||+.||+|+..+.. .. .+..+... .......|.+|||+++.|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~---~~----~l~~~~~~------~~~~~~~L~~~~R~~~~I~~~a 207 (459)
T 3upu_A 141 DRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGEN---TA----YISPFFTH------KDFYQCELTEVKRSNAPIIDVA 207 (459)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSC---SC----CCCGGGTC------TTEEEEECCCCCCCCCHHHHHH
T ss_pred CHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcc---hH----hHHHHHhc------CCCcEEeceeeeeCCcHHHHHH
Confidence 77777777766666789999999999999855321 11 11111111 1234668999999999999999
Q ss_pred hhhhc
Q 038509 636 SKLFY 640 (806)
Q Consensus 636 n~lfY 640 (806)
+.+..
T Consensus 208 ~~lr~ 212 (459)
T 3upu_A 208 TDVRN 212 (459)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98754
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=6.7e-30 Score=305.65 Aligned_cols=280 Identities=18% Similarity=0.203 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-C-CCCeEEEEecchHHHHHHHHHHhcccc----
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-R-EHSRILVCAASNSAADHMLERLISNEV---- 473 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~-~~~rILv~apSN~Aad~l~erL~~~~~---- 473 (806)
.||++|++||.+. .+|++|.|+||||||+||+++|.+++.. . ++.+||++||||+||++|.+|+.+...
T Consensus 2 ~L~~~Q~~av~~~-----~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~ 76 (673)
T 1uaa_A 2 RLNPGQQQAVEFV-----TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEA 76 (673)
T ss_dssp CCCHHHHHHHHCC-----SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTT
T ss_pred CCCHHHHHHHhCC-----CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccc
Confidence 5899999999852 3679999999999999999999999975 2 678999999999999999999976311
Q ss_pred cCcccccEEEcccC-----------CCCCCCCChh----h-hhh-------------------hchhhhhccCCch----
Q 038509 474 AGIKENEILRLNAT-----------SRPYEDVPTD----F-IRF-------------------CFFEESIFKCPPR---- 514 (806)
Q Consensus 474 ~~~~~~~i~Rl~~~-----------~r~~~~i~~~----~-~~~-------------------~~~~~~~~~~~~~---- 514 (806)
..+...++++++.. ...+.-+.+. + ... ..+.+... .+..
T Consensus 77 ~~~~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~-~~~~~~~~ 155 (673)
T 1uaa_A 77 RGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLK-TPSQAAAS 155 (673)
T ss_dssp TTSEEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTTTC-CTTHHHHT
T ss_pred cCCEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHcCC-CHHHHHHH
Confidence 11222333333210 0000000000 0 000 00000000 0000
Q ss_pred -----------------hhhcccee------eeeeecccccccc-c---CCcCCCCcEEEEecCCCCcchhHHHHHhhcc
Q 038509 515 -----------------EALGRYRI------IISTYMSSSLLNT-N---GIKRGNFSHIFLDEAGQASEPESMIPIANLC 567 (806)
Q Consensus 515 -----------------~~L~~~~V------i~~T~~s~~~l~~-~---~~~~~~Fd~ViIDEAsQ~~epe~li~L~~l~ 567 (806)
+.+..... +..+. ..+.. . .....+|+||+|||+ ||+.|.++..|..++
T Consensus 156 ~~~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~---~lL~~~~~~~~~~~~~~~~ilVDEf-QDt~~~Q~~ll~~L~ 231 (673)
T 1uaa_A 156 AIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPT---LLLQANEEVRKRWQNKIRYLLVDEY-QDTNTSQYELVKLLV 231 (673)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHH---HHHHHCHHHHHHHHTTCSEEEESCG-GGCBHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH---HHHHhChHHHHHHHhhCcEEEEecc-ccCCHHHHHHHHHHh
Confidence 00000000 00000 00000 0 011258999999999 999999999998887
Q ss_pred cCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccChhHHHHhhhhhhcCCccccc
Q 038509 568 TKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLAC 647 (806)
Q Consensus 568 ~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~p~I~~~~n~lfY~~~L~~~ 647 (806)
..+.++++|||++| .||+++++. ...+.++... + .......|..||||+++|++++|.+|..+.....
T Consensus 232 ~~~~~l~~vGD~~Q---sIy~frga~----~~~~~~~~~~--~---~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~ 299 (673)
T 1uaa_A 232 GSRARFTVVGDDDQ---SIYSWRGAR----PQNLVLLSQD--F---PALKVIKLEQNYRSSGRILKAANILIANNPHVFE 299 (673)
T ss_dssp TTTCCEEEECCGGG---CCCGGGTBC----TTHHHHHHHH--S---TTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSC
T ss_pred cCCCeEEEEeCchh---hhhhccCCC----HHHHHHHHHh--C---CCCeEEECCCCCCCChHHHHHHHHHHHhchhccc
Confidence 76678999999999 999998654 3455555331 1 1223567999999999999999999865432110
Q ss_pred CCccccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCChH
Q 038509 648 KDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQ 722 (806)
Q Consensus 648 ~~~~~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPy~~ 722 (806)
. ..+...+ .+.++.++.... ...|+..|+..|..++...+++++||+||++.+.
T Consensus 300 ~--------~l~~~~~-~g~~i~~~~~~~------------~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~ 353 (673)
T 1uaa_A 300 K--------RLFSELG-YGAELKVLSANN------------EEHEAERVTGELIAHHFVNKTQYKDYAILYRGNH 353 (673)
T ss_dssp C--------CCCBSSC-CCCCBEEEECSS------------HHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSG
T ss_pred c--------cccccCC-CCCCceEEecCC------------HHHHHHHHHHHHHHHHhccCCCccCEEEEEechh
Confidence 0 0011111 123444443221 2458999999999998433789999999998653
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.93 E-value=2e-25 Score=262.79 Aligned_cols=356 Identities=19% Similarity=0.169 Sum_probs=179.2
Q ss_pred CCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHhcccccCccc
Q 038509 401 LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST--REHSRILVCAASNSAADHMLERLISNEVAGIKE 478 (806)
Q Consensus 401 LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~--~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~ 478 (806)
.+++|++|+..++. .+.++|+||||||||+|++.++..+... ..+.+|+++|||+.||+.|.+.+..... .+.
T Consensus 150 ~~~~Q~~Ai~~~l~---~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~-~l~- 224 (608)
T 1w36_D 150 EINWQKVAAAVALT---RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALR-QLP- 224 (608)
T ss_dssp SCCHHHHHHHHHHT---BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHH-HSS-
T ss_pred CCHHHHHHHHHHhc---CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHh-cCC-
Confidence 37899999999986 3568999999999999999888877653 3456999999999999999998764210 000
Q ss_pred ccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchh
Q 038509 479 NEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPE 558 (806)
Q Consensus 479 ~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe 558 (806)
+....+ ..++.... .-++++..+..... +........+++++|||||+|...+.
T Consensus 225 -----l~~~~~--~~~~~~~~------------------Tih~ll~~~~~~~~-~~~~~~~~l~~d~lIIDEAsml~~~~ 278 (608)
T 1w36_D 225 -----LTDEQK--KRIPEDAS------------------TLHRLLGAQPGSQR-LRHHAGNPLHLDVLVVDEASMIDLPM 278 (608)
T ss_dssp -----CCSCCC--CSCSCCCB------------------TTTSCC------------CTTSCCSCSEEEECSGGGCBHHH
T ss_pred -----CCHHHH--hccchhhh------------------hhHhhhccCCCchH-HHhccCCCCCCCEEEEechhhCCHHH
Confidence 000000 00000000 00001100000000 00011123378999999998777654
Q ss_pred HHHHHhhcccCCCEEEEecCCCCCCceeecch------hhhcCCCccHHHHHhhccccc--C----CCc---cceecccc
Q 038509 559 SMIPIANLCTKQTVVVLAGDPKQLGPVIYSKD------AETFGLGKSYLERLFECEFYR--N----GDE---GYVTKLVR 623 (806)
Q Consensus 559 ~li~L~~l~~~~~~lVLvGDp~QL~PvI~s~~------a~~~gl~~Sl~eRL~~~~~~~--~----~~~---~~v~~L~~ 623 (806)
+..|......+.++||+||+.||||+..+.. ....|+..++++++....-+. . ..+ ..+..|++
T Consensus 279 -~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 357 (608)
T 1w36_D 279 -MSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK 357 (608)
T ss_dssp -HHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCCCSTTTTHHHHTTEEECCC
T ss_pred -HHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCcccccccccccccccccEEecce
Confidence 3444434456789999999999999865431 124578888888885431110 0 011 12678999
Q ss_pred cccChhH--HHHhhhhhhcCCccccc-------CCcccccc---ccc-----------c---------ccCCCC------
Q 038509 624 NYRCHPA--ILDLPSKLFYGGELLAC-------KDDATSLS---SAK-----------V---------DIFPNK------ 665 (806)
Q Consensus 624 nYRs~p~--I~~~~n~lfY~~~L~~~-------~~~~~~~~---~~~-----------~---------~~lp~~------ 665 (806)
+||++++ |..+++.+ ..|..... ..+..... ... + ...|..
T Consensus 358 ~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 436 (608)
T 1w36_D 358 SYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFN 436 (608)
T ss_dssp CCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHHHHHHHTCCCSSTTHHHHT
T ss_pred eeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceEEEecCChHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHh
Confidence 9999877 99988764 44432110 00000000 000 0 000110
Q ss_pred CCCEEEEec-cCc---cc-----cc-CCCCCcc--CHHHHHHHHHHHHHHHH--cCCCCCCeEEEEcCChHHHHHHHHHh
Q 038509 666 DFPVLFFGI-QGC---DE-----RE-GNNPSWF--NRFEVSKVVDIINKLRE--NTELNETDIGVITPYRQQVLKIKKVL 731 (806)
Q Consensus 666 ~~pv~f~~~-~g~---~~-----~~-~~~~S~~--N~~Ea~~V~~~v~~L~~--~~~~~~~dIgIItPy~~Qv~~i~~~L 731 (806)
++.+ .... .|. .. +. -+..... .......+-+.|....+ ..++..+|||+|++.... ++-.+
T Consensus 437 ~~~v-L~~~~~g~~gv~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~~~Nd~~~gl~NGdiG~V~~~~~~---l~v~f 512 (608)
T 1w36_D 437 EYQL-LCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQG---TRVWF 512 (608)
T ss_dssp TEEE-EESCSSSSSSHHHHHHHHHGGGTSCC-------------------------------------------------
T ss_pred hhhh-hCCccCCchhHHHHHHHHHHHhCccCcccccccccccCCCeeeEeeechhhcccCCCeEEEEEcCCe---EEEEE
Confidence 1111 1111 110 00 00 0000000 00000001111111111 125778999999987422 11111
Q ss_pred h----------cC---CCCCeEECcccccccceeeEEEEEeccCCCcCcccccccccccCCCCCceeecccccccceEEE
Q 038509 732 E----------TW---DMPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIV 798 (806)
Q Consensus 732 ~----------~~---~~~~v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl~~~rrlnVAlTRAK~~LiIv 798 (806)
. .. .+....+.|||++||.|+|.||+....... ...+++.+|||+||||+.|+++
T Consensus 513 ~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~------------~~~~~~~~Yva~tRa~~~l~l~ 580 (608)
T 1w36_D 513 AMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT------------PVVTRELVYTAVTRARRRLSLY 580 (608)
T ss_dssp ----------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC------------SSSCHHHHHHHHTTBSSCEEEE
T ss_pred ECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc------------chhhhhhHHhhhhhhhceEEEE
Confidence 1 11 123456889999999999999998643321 1347889999999999999999
Q ss_pred Ecccccc
Q 038509 799 GNPHIVC 805 (806)
Q Consensus 799 Gn~~~L~ 805 (806)
|+...|.
T Consensus 581 ~~~~~l~ 587 (608)
T 1w36_D 581 ADERILS 587 (608)
T ss_dssp CCTTHHH
T ss_pred ECHHHHH
Confidence 9987653
No 11
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.90 E-value=3.6e-24 Score=270.84 Aligned_cols=169 Identities=17% Similarity=0.216 Sum_probs=105.1
Q ss_pred CCcEEEEecCCCCcchhHHHHHhhcccC---CCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccC--CCcc
Q 038509 542 NFSHIFLDEAGQASEPESMIPIANLCTK---QTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRN--GDEG 616 (806)
Q Consensus 542 ~Fd~ViIDEAsQ~~epe~li~L~~l~~~---~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~--~~~~ 616 (806)
+|+||+|||+ |+++|.++..|..++.. ...+++|||++| .||+|+++ ...+|...... |.. ....
T Consensus 400 ~~~~IlVDEf-QDt~~~Q~~il~~L~~~~~~~~~l~~vGD~~Q---sIY~FRgA----d~~~f~~~~~~--~~~~~~~~~ 469 (1232)
T 3u4q_A 400 QFHEVLVDEY-QDTNLVQESILQLVTSGPEETGNLFMVGDVKQ---SIYRFRLA----EPLLFLSKYKR--FTESGEGTG 469 (1232)
T ss_dssp HCSEEEESSG-GGCCHHHHHHHHHHSCSCTTSSCEEEEECGGG---CCCTTTTC----CTHHHHHHHHH--SBSSCTTSC
T ss_pred CCCEEEEEcc-ccCCHHHHHHHHHHhcCCCCCCcEEEEeCchH---HhHhccCC----CHHHHHHHHHH--hhhhcCCCC
Confidence 5999999999 99999999999888764 468999999999 99999854 44556554332 211 1123
Q ss_pred ceecccccccChhHHHHhhhhhhcCCcccccCC---ccccccccccccCCC-CCCCEEEEeccCccccc-CCCCC--ccC
Q 038509 617 YVTKLVRNYRCHPAILDLPSKLFYGGELLACKD---DATSLSSAKVDIFPN-KDFPVLFFGIQGCDERE-GNNPS--WFN 689 (806)
Q Consensus 617 ~v~~L~~nYRs~p~I~~~~n~lfY~~~L~~~~~---~~~~~~~~~~~~lp~-~~~pv~f~~~~g~~~~~-~~~~S--~~N 689 (806)
....|.+||||+++|++++|.+|....-..... ..... ......++. .+.++.++-..+..... ...+. -..
T Consensus 470 ~~i~L~~NyRS~~~Il~~~n~lf~~~~~~~~~~i~y~~~~~-l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 548 (1232)
T 3u4q_A 470 RKIDLNKNFRSRADILDSTNFLFKQLMGGKIGEVDYDEQAE-LKLGAAYPDNDETETELLLIDNAEDTDASEEAEELETV 548 (1232)
T ss_dssp EEEEECEESSSCHHHHHHHHHHHHTTSCHHHHSSCCCTTTS-CEECCCCCCCSSCSEEEEEEC-------------CHHH
T ss_pred cEeECCCCCCCChHHHHHHHHHHhhccccccccCCCchhhh-cccCccCccCCCCCeEEEEecCCccccccccccccccH
Confidence 466799999999999999999986542100000 00000 000001111 22344444332211000 00000 123
Q ss_pred HHHHHHHHHHHHHHHHcC------------CCCCCeEEEEcCCh
Q 038509 690 RFEVSKVVDIINKLRENT------------ELNETDIGVITPYR 721 (806)
Q Consensus 690 ~~Ea~~V~~~v~~L~~~~------------~~~~~dIgIItPy~ 721 (806)
..||..|+..|..++..+ ++.++||+||++.+
T Consensus 549 ~~Ea~~iA~~I~~l~~~~~~v~d~~~~~~r~~~~~DIAIL~R~~ 592 (1232)
T 3u4q_A 549 QFEAKAIAKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSM 592 (1232)
T ss_dssp HHHHHHHHHHHHHHHTSCCCBC---CCCCBCCCSTTEEEEESSS
T ss_pred HHHHHHHHHHHHHHHhcCCceecccccccCCCCcCCEEEEEECc
Confidence 468999999999998764 57789999999865
No 12
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.86 E-value=2.9e-21 Score=215.03 Aligned_cols=259 Identities=16% Similarity=0.165 Sum_probs=156.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccccEEEcccCCCCCCCCChhh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDF 498 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~ 498 (806)
...+|.|+||||||+.|.+.+. ..++|++|||+.|++++.+++.+.+.. ....
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~~~----------~~~~---------- 214 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANASGII----------VATK---------- 214 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTTSCC----------CCCT----------
T ss_pred cEEEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhcCcc----------cccc----------
Confidence 3469999999999999877542 257899999999999999998642000 0000
Q ss_pred hhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhHHHHHhhcccCCCEEEEecC
Q 038509 499 IRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGD 578 (806)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~li~L~~l~~~~~~lVLvGD 578 (806)
.-+.|..+... .........+++||||||++.. +..+..+..+.. ..+++++||
T Consensus 215 -----------------------~~V~T~dsfL~-~~~~~~~~~~d~liiDE~sm~~-~~~l~~l~~~~~-~~~vilvGD 268 (446)
T 3vkw_A 215 -----------------------DNVRTVDSFLM-NYGKGARCQFKRLFIDEGLMLH-TGCVNFLVEMSL-CDIAYVYGD 268 (446)
T ss_dssp -----------------------TTEEEHHHHHH-TTTSSCCCCCSEEEEETGGGSC-HHHHHHHHHHTT-CSEEEEEEC
T ss_pred -----------------------ceEEEeHHhhc-CCCCCCCCcCCEEEEeCcccCC-HHHHHHHHHhCC-CCEEEEecC
Confidence 00111111110 0011122358999999997665 445544444443 379999999
Q ss_pred CCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccChhHHHHhhhhhhcCCcccccCCccccccccc
Q 038509 579 PKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAK 658 (806)
Q Consensus 579 p~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs~p~I~~~~n~lfY~~~L~~~~~~~~~~~~~~ 658 (806)
++||||+-.... +.+..+ +.++. ...+..+..+|||+.+++.+.+.+ |++.+......
T Consensus 269 ~~Qlp~v~~~~~---~~~~~~-~~~l~---------~~~~~~~~~SyR~p~dv~~lLs~l-Y~~~V~t~s~~-------- 326 (446)
T 3vkw_A 269 TQQIPYINRVTG---FPYPAH-FAKLE---------VDEVETRRTTLRCPADVTHFLNQR-YEGHVMCTSSE-------- 326 (446)
T ss_dssp TTSCCCCCCSTT---CCCCHH-HHSCC---------CSEEEEECEESSCCHHHHHHHHTT-SSSCCEECCCC--------
T ss_pred cccccCcccCCC---ccchhh-hhhcc---------cCcEEEeeeEeCCCHHHHHHHHhh-cCCceEECCCc--------
Confidence 999999854431 111111 22211 112345789999999999999986 77654322111
Q ss_pred cccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCChHHHHHHHHHhhcCCCCC
Q 038509 659 VDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIINKLRENTELNETDIGVITPYRQQVLKIKKVLETWDMPD 738 (806)
Q Consensus 659 ~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~~L~~~~~~~~~dIgIItPy~~Qv~~i~~~L~~~~~~~ 738 (806)
...+.+..+.+...-+.. ..++. --|||+.......+. +.|..
T Consensus 327 -------~~sv~~~~I~~~~~~~~~------------------------~~~~~-g~iLtftq~~k~~L~----~~G~~- 369 (446)
T 3vkw_A 327 -------KKSVSQEMVSGAASINPV------------------------SKPLK-GKILTFTQSDKEALL----SRGYA- 369 (446)
T ss_dssp -------CCCEEEEECCCGGGCCTT------------------------TSCCC-SEEEESSHHHHHHHH----TTTCC-
T ss_pred -------CceEEEeccccccccccc------------------------cCCCC-CeEEEcCHHHHHHHH----HhCCC-
Confidence 112444444443211100 11122 256787766666555 33432
Q ss_pred eEECcccccccceeeEEEEEeccCCCcCcccccccccccCCCCCceeecccccccceEEEE
Q 038509 739 VKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFLSNPRRFNVAITRARSLLIIVG 799 (806)
Q Consensus 739 v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl~~~rrlnVAlTRAK~~LiIvG 799 (806)
.+.|||++||.|+|.|.+....+.. ...|..++.++|||+||||+.|.++.
T Consensus 370 -~~~Tv~e~QG~tf~~Vtlvr~~~~~---------~~l~~~~~~~~~VALTRh~~~L~~~t 420 (446)
T 3vkw_A 370 -DVHTVHEVQGETYADVSLVRLTPTP---------VSIIARDSPHVLVSLSRHTKSLKYYT 420 (446)
T ss_dssp -SCEETGGGTTCCEEEEEEEECCCSC---------CTTCSTTCHHHHHHHSSEEEEEEEEE
T ss_pred -CccCHHHcCCcccCeEEEEECCCCC---------cccccCCccceEEEeecCCCEEEEEE
Confidence 2889999999999998874433221 11233478899999999999999874
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.83 E-value=1.1e-20 Score=238.20 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=100.5
Q ss_pred CCcEEEEecCCCCcchhHHHHHhhccc--CCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCcccee
Q 038509 542 NFSHIFLDEAGQASEPESMIPIANLCT--KQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVT 619 (806)
Q Consensus 542 ~Fd~ViIDEAsQ~~epe~li~L~~l~~--~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~ 619 (806)
+|+||+|||+ ||++|.++..|..+.. .+..+++|||++| +||+|++++. ..+.+.... .....
T Consensus 377 r~~~ilVDEf-QDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQ---SIY~FRGAd~----~~~~~~~~~-------~~~~~ 441 (1180)
T 1w36_B 377 RFPVAMIDEF-QDTDPQQYRIFRRIWHHQPETALLLIGDPKQ---AIYAFRGADI----FTYMKARSE-------VHAHY 441 (1180)
T ss_dssp HCSEEEECSG-GGCCHHHHHHHHHHHTTCTTCEEEEEECGGG---CCCGGGTCCH----HHHHHHHHH-------CCCEE
T ss_pred CCCEEEEECC-ccCCHHHHHHHHHHHcCCCCCeEEEEECCcc---ccccCcCCCH----HHHHHHHHh-------cCCce
Confidence 4999999999 9999999999987764 3568999999999 9999997642 222222111 01245
Q ss_pred cccccccChhHHHHhhhhhhcCCccccc-CCc---cc--cc--cccccccCCCCCCCEEEEeccCcccccCCCCCccCHH
Q 038509 620 KLVRNYRCHPAILDLPSKLFYGGELLAC-KDD---AT--SL--SSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRF 691 (806)
Q Consensus 620 ~L~~nYRs~p~I~~~~n~lfY~~~L~~~-~~~---~~--~~--~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~ 691 (806)
.|.+||||+++|+++.|.+|-...-... ... .. .. ....+..-.....++.++...... .+..-....
T Consensus 442 ~L~~NyRS~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~ 517 (1180)
T 1w36_B 442 TLDTNWRSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES----CGVGDYQST 517 (1180)
T ss_dssp ECCEETTSCHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCSSC----CCTTHHHHH
T ss_pred eCCCCcCCcHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCCCc----cCcchHHHH
Confidence 7999999999999999998854321000 000 00 00 000000000001134443222110 000111245
Q ss_pred HHHHHHHHHHHHHHc--------------CCCCCCeEEEEcCChHH
Q 038509 692 EVSKVVDIINKLREN--------------TELNETDIGVITPYRQQ 723 (806)
Q Consensus 692 Ea~~V~~~v~~L~~~--------------~~~~~~dIgIItPy~~Q 723 (806)
||..|+..|.+++.. .++.++||+||++.+.|
T Consensus 518 ea~~iA~~I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~ 563 (1180)
T 1w36_B 518 MAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQE 563 (1180)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHhcccccceecCCcccCCCCcccEEEEeecchH
Confidence 899999999998863 35789999999998743
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.60 E-value=1.9e-15 Score=149.34 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=99.7
Q ss_pred cccccChhHHHHhhhhhhcCCcccccCCccccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHHHHHHHHHH
Q 038509 622 VRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEVSKVVDIIN 701 (806)
Q Consensus 622 ~~nYRs~p~I~~~~n~lfY~~~L~~~~~~~~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea~~V~~~v~ 701 (806)
++||||+++|++++|.++.++.-. . .....+..|.+ ..... ..+|+..|.+.+.
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~~-------~------~~~~~G~~p~~-~~~~~------------~~~e~~~i~~~I~ 55 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEAV-------T------AFDRQGDLPNV-VVTPN------------FEAGVDQVVDQLA 55 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC---------------------CCCCCCEE-EEESS------------HHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcc-------c------CCCCCCCCCEE-EEeCC------------HHHHHHHHHHHHH
Confidence 479999999999999987544210 0 00112222333 22221 1348888999888
Q ss_pred HHHHcCCCCCCeEEEEcCChHHHHHHHHHhhcCCC-------------CCeEECcccccccceeeEEEEEeccCCCcCcc
Q 038509 702 KLRENTELNETDIGVITPYRQQVLKIKKVLETWDM-------------PDVKVGTVEQFQGQEREVIIVSTVRSTVKHNE 768 (806)
Q Consensus 702 ~L~~~~~~~~~dIgIItPy~~Qv~~i~~~L~~~~~-------------~~v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~ 768 (806)
. ... + +++||||++.+.|...+...|.+.|+ ..+.|.|+|.+||+|||+||+..+....
T Consensus 56 ~-~~~-g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~---- 127 (174)
T 3dmn_A 56 M-NDS-E--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQEN---- 127 (174)
T ss_dssp H-HHH-T--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTT----
T ss_pred H-hcc-C--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCccc----
Confidence 8 444 3 68999999999999999999987643 2488999999999999999998764421
Q ss_pred cccccccccCCCCCceeecccccccceEEEEc
Q 038509 769 FDRTYCLGFLSNPRRFNVAITRARSLLIIVGN 800 (806)
Q Consensus 769 ~d~~~~lgfl~~~rrlnVAlTRAK~~LiIvGn 800 (806)
.....++|+||||+||||+.|+|++.
T Consensus 128 ------~~~~~~~~llYva~TRA~~~l~~~~~ 153 (174)
T 3dmn_A 128 ------YQREDERQLLYTICSRAMHELTLVAV 153 (174)
T ss_dssp ------SCSGGGHHHHHHHHTTEEEEEEEEEE
T ss_pred ------CCChhhhceeEEEecCcccEEEEEeC
Confidence 11135678999999999999999985
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.51 E-value=2.3e-14 Score=181.10 Aligned_cols=167 Identities=14% Similarity=0.173 Sum_probs=116.0
Q ss_pred cEEEEecCCCCcchhHHHHHhhcccCCCEEE--EecC--------CCCCCceeecchhhhcCCCccHHHHHhhcccccCC
Q 038509 544 SHIFLDEAGQASEPESMIPIANLCTKQTVVV--LAGD--------PKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNG 613 (806)
Q Consensus 544 d~ViIDEAsQ~~epe~li~L~~l~~~~~~lV--LvGD--------p~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~ 613 (806)
+||+|||+ |++.|.++..|..++..+.++. ++|| ++| .||+++++... .+.++....-+
T Consensus 203 ~~IlVDEf-QD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~Q---sIY~~rga~~~----~l~~~~~~~~~--- 271 (1166)
T 3u4q_B 203 AHIYVDGF-YQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHEL---ELFRMTGKTYY----RLHQKAKELNL--- 271 (1166)
T ss_dssp CEEEECSC-SCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTT---CTTHHHHHHHH----HHHHHHHHTTC---
T ss_pred CEEEEeCC-CCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCC---CcchhHHHHHH----HHHHHHHHcCC---
Confidence 79999999 9999999999988876555544 6699 889 99999876543 23333221001
Q ss_pred CccceecccccccChhHHHHhhhhhhcCCcccccCCccccccccccccCCCCCCCEEEEeccCcccccCCCCCccCHHHH
Q 038509 614 DEGYVTKLVRNYRCHPAILDLPSKLFYGGELLACKDDATSLSSAKVDIFPNKDFPVLFFGIQGCDEREGNNPSWFNRFEV 693 (806)
Q Consensus 614 ~~~~v~~L~~nYRs~p~I~~~~n~lfY~~~L~~~~~~~~~~~~~~~~~lp~~~~pv~f~~~~g~~~~~~~~~S~~N~~Ea 693 (806)
.......|..||||+++|+++.++.+.... . ..++..+.++.++.... ...|+
T Consensus 272 ~~~~~~~L~~nyRs~~~il~~i~~~~~~~~-------~--------~~~~~~~~~i~i~~~~~------------~~~Ea 324 (1166)
T 3u4q_B 272 DITYKELSGTERHTKTPELAHLEAQYEARP-------A--------IPYAEKQEALTVMQAAN------------RRAEL 324 (1166)
T ss_dssp CEEEEEECSCSTTTTCHHHHHHHHSSSCSS-------C--------CCCCSCCSSEEEEEESS------------HHHHH
T ss_pred CcccceecCCCCCCCCHHHHHHHHhHhhcC-------C--------CccCCCCCCeEEEEcCC------------hHHHH
Confidence 112356799999999999998876542110 0 00112233455544322 23599
Q ss_pred HHHHHHHHHHHHcCCCCCCeEEEEcCCh-HHHHHHHHHhhcCCCCCeEECcccccc
Q 038509 694 SKVVDIINKLRENTELNETDIGVITPYR-QQVLKIKKVLETWDMPDVKVGTVEQFQ 748 (806)
Q Consensus 694 ~~V~~~v~~L~~~~~~~~~dIgIItPy~-~Qv~~i~~~L~~~~~~~v~V~TVd~fQ 748 (806)
..|+..|..++...|++++||+||++.+ .|...|...|.+.+++....+...-++
T Consensus 325 ~~ia~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~gIP~~~~~~~~~~~ 380 (1166)
T 3u4q_B 325 EGIAREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYEIPYFIDGKASMLN 380 (1166)
T ss_dssp HHHHHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTTCCEEESSCCBSTT
T ss_pred HHHHHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcCCCEEECCCcchhc
Confidence 9999999999885589999999999998 589999999999998855444443333
No 16
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.75 E-value=5e-08 Score=103.40 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.|++.|.+|+..++... ..+|.+|.|||||.+.+..+...+.. ...++|+++||++.+++..+++.+.. .....
T Consensus 113 ~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~--~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYR--LFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHT--SCCGG
T ss_pred CccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhc--ccccc
Confidence 68999999999988742 35899999999999988777776653 34599999999999999999987631 11111
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhH
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPES 559 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~ 559 (806)
.+..+....... .......+|+++|..+..... .....+|++||||||.....+ .
T Consensus 187 ~~~~~~~~~~~~----------------------~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~~~-~ 241 (282)
T 1rif_A 187 MIKKIGGGASKD----------------------DKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLATGK-S 241 (282)
T ss_dssp GEEECSTTCSST----------------------TCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCCHH-H
T ss_pred eEEEEeCCCcch----------------------hhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCCcc-c
Confidence 222222211100 012345788999886543221 112347899999999555444 4
Q ss_pred HHHHh
Q 038509 560 MIPIA 564 (806)
Q Consensus 560 li~L~ 564 (806)
+..+.
T Consensus 242 ~~~il 246 (282)
T 1rif_A 242 ISSII 246 (282)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44443
No 17
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.73 E-value=5.2e-08 Score=99.16 Aligned_cols=130 Identities=18% Similarity=0.163 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHH-hCCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYS-TREHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~-~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|++|+..++..+ .++|.+|.|||||.+..-.+.+.+. ...+.++|+++||+..+..+.+++.+.... .
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~ 109 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH--M 109 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT--S
T ss_pred CCCcHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcc--c
Confidence 478999999999998743 4899999999999885444444332 234569999999999999998888652110 0
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccc-ccccCCcCCCCcEEEEecCCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSL-LNTNGIKRGNFSHIFLDEAGQ 553 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~-l~~~~~~~~~Fd~ViIDEAsQ 553 (806)
...+..+...... ....+.+..++|+++|...... +........++++||||||-.
T Consensus 110 ~~~~~~~~g~~~~--------------------~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 110 DIKVHACIGGTSF--------------------VEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp CCCEEEECC------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred CceEEEEeCCcch--------------------HHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 1112111111000 0001223347899999765322 122233445789999999943
No 18
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.71 E-value=2.5e-08 Score=100.56 Aligned_cols=132 Identities=20% Similarity=0.190 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC----CCCeEEEEecchHHHHH-HHHHHhccccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR----EHSRILVCAASNSAADH-MLERLISNEVA 474 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~----~~~rILv~apSN~Aad~-l~erL~~~~~~ 474 (806)
.|++.|.+|+..++.. ..++|.||+|||||.+....+.+++... .+.++|+++|++..++. +.+.+......
T Consensus 33 ~l~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 33 QLRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CchHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 7999999999999863 3489999999999999888887766532 36799999999999888 54444431110
Q ss_pred CcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccC-------CcCCCCcEEE
Q 038509 475 GIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNG-------IKRGNFSHIF 547 (806)
Q Consensus 475 ~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~-------~~~~~Fd~Vi 547 (806)
...+..+..... ...........++|+++|........... .....+++||
T Consensus 110 ---~~~v~~~~g~~~-------------------~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iI 167 (216)
T 3b6e_A 110 ---WYRVIGLSGDTQ-------------------LKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLII 167 (216)
T ss_dssp ---TSCEEECCC----------------------CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEE
T ss_pred ---CceEEEEeCCcc-------------------cchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEE
Confidence 112222211110 00011122345789999976543221111 2345789999
Q ss_pred EecCCCCcc
Q 038509 548 LDEAGQASE 556 (806)
Q Consensus 548 IDEAsQ~~e 556 (806)
||||-....
T Consensus 168 iDEah~~~~ 176 (216)
T 3b6e_A 168 IDECHHTNK 176 (216)
T ss_dssp ETTC-----
T ss_pred EECchhhcc
Confidence 999955433
No 19
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.70 E-value=1.1e-07 Score=98.31 Aligned_cols=138 Identities=22% Similarity=0.224 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.|++.|++|+..++... ..+|.||+|+|||.+....+.++ +.++|+++|+...++++.+++.+. .. .
T Consensus 93 ~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~---~~--~ 159 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF---GE--E 159 (237)
T ss_dssp CCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGG---CG--G
T ss_pred CcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhC---CC--C
Confidence 89999999999988643 28999999999999876665542 578999999999999998888751 11 1
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhH
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPES 559 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~ 559 (806)
.+..+..... ...+|+++|......... .....|++||||||.....+ .
T Consensus 160 ~v~~~~g~~~----------------------------~~~~i~v~T~~~l~~~~~--~~~~~~~llIiDEaH~l~~~-~ 208 (237)
T 2fz4_A 160 YVGEFSGRIK----------------------------ELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHHLPAE-S 208 (237)
T ss_dssp GEEEESSSCB----------------------------CCCSEEEEEHHHHHHTHH--HHTTTCSEEEEECSSCCCTT-T
T ss_pred eEEEEeCCCC----------------------------CcCCEEEEeHHHHHhhHH--HhcccCCEEEEECCccCCCh-H
Confidence 1222221110 134678888654332111 11246899999999655544 4
Q ss_pred HHHHhhcccCCCEEEEecCCCC
Q 038509 560 MIPIANLCTKQTVVVLAGDPKQ 581 (806)
Q Consensus 560 li~L~~l~~~~~~lVLvGDp~Q 581 (806)
+..+........++.|.|=|.+
T Consensus 209 ~~~i~~~~~~~~~l~LSATp~r 230 (237)
T 2fz4_A 209 YVQIAQMSIAPFRLGLTATFER 230 (237)
T ss_dssp HHHHHHTCCCSEEEEEEESCC-
T ss_pred HHHHHHhccCCEEEEEecCCCC
Confidence 4444444434445666665544
No 20
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.68 E-value=6.8e-08 Score=96.86 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh----CCCCeEEEEecchHHHHHHHHHHhccccc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST----REHSRILVCAASNSAADHMLERLISNEVA 474 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~----~~~~rILv~apSN~Aad~l~erL~~~~~~ 474 (806)
..+++.|++++..++..+ .+++.+|+|||||.+....+.+.+.. ..+.++|+++||+..+..+.+++.+...
T Consensus 22 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~- 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK---DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP- 97 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT-
T ss_pred CCCCHHHHHHHHHHcCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh-
Confidence 478999999999998743 48999999999999866666555432 2467899999999999999998876311
Q ss_pred CcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEecCC
Q 038509 475 GIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEAG 552 (806)
Q Consensus 475 ~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEAs 552 (806)
...+..+..... .... .......++|+++|....... .........+++||||||-
T Consensus 98 ---~~~~~~~~~~~~----~~~~---------------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 154 (207)
T 2gxq_A 98 ---HLKVVAVYGGTG----YGKQ---------------KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEAD 154 (207)
T ss_dssp ---TSCEEEECSSSC----SHHH---------------HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHH
T ss_pred ---cceEEEEECCCC----hHHH---------------HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChh
Confidence 112222211110 0000 011124578999997554321 2223344678999999994
No 21
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.68 E-value=4.7e-08 Score=100.54 Aligned_cols=132 Identities=15% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHHhccc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-----REHSRILVCAASNSAADHMLERLISNE 472 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-----~~~~rILv~apSN~Aad~l~erL~~~~ 472 (806)
+..+++.|++|+..++..+ .++|.+|.|||||.+....+.+.+.. .++.++|+++||+..+..+.+++.+..
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQGK---DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CCBCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhCCC---CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3478999999999998743 48999999999999866655554432 246789999999999999998887531
Q ss_pred ccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccc--cCCcCCCCcEEEEec
Q 038509 473 VAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNT--NGIKRGNFSHIFLDE 550 (806)
Q Consensus 473 ~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~--~~~~~~~Fd~ViIDE 550 (806)
.. ....+..+..... ... ....+..++|+++|......... ..+....+++|||||
T Consensus 122 ~~--~~~~~~~~~g~~~----~~~----------------~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 122 KN--HDFSAGLIIGGKD----LKH----------------EAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp TT--SSCCEEEECCC------CHH----------------HHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred CC--CCeeEEEEECCCC----HHH----------------HHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 10 0011111111000 000 01223567899999755432211 123445789999999
Q ss_pred CCCC
Q 038509 551 AGQA 554 (806)
Q Consensus 551 AsQ~ 554 (806)
|-..
T Consensus 180 ah~~ 183 (236)
T 2pl3_A 180 ADRI 183 (236)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 9433
No 22
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.66 E-value=1.1e-07 Score=97.27 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=80.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-------CCCCeEEEEecchHHHHHHHHHHhcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-------REHSRILVCAASNSAADHMLERLISN 471 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-------~~~~rILv~apSN~Aad~l~erL~~~ 471 (806)
..+++.|++|+..++..+ .+++.+|.|||||.+..-.+.+.+.. ..+.++|+++||+..+..+.+++.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~~~---~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 478999999999988743 47999999999998765554443321 25678999999999999999988763
Q ss_pred cccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEec
Q 038509 472 EVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDE 550 (806)
Q Consensus 472 ~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDE 550 (806)
... ......+..... ............+|+++|......+ ........++++|||||
T Consensus 118 ~~~---~~~~~~~~~~~~-------------------~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 175 (228)
T 3iuy_A 118 SYK---GLKSICIYGGRN-------------------RNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDE 175 (228)
T ss_dssp CCT---TCCEEEECC-------------------------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECC
T ss_pred ccc---CceEEEEECCCC-------------------hHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEEC
Confidence 111 111111111100 0000011224578999997554322 12223345789999999
Q ss_pred CC
Q 038509 551 AG 552 (806)
Q Consensus 551 As 552 (806)
|-
T Consensus 176 ah 177 (228)
T 3iuy_A 176 AD 177 (228)
T ss_dssp HH
T ss_pred HH
Confidence 93
No 23
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.63 E-value=8.2e-08 Score=104.57 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCccc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKE 478 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~ 478 (806)
..+++.|++|+..++... ..++|.+|+|||||.+....+.+++...++.++|+++|+...++.+.+++.+.... ..
T Consensus 27 ~~~~~~Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN--KN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS--SC
T ss_pred CCCCHHHHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC--CC
Confidence 478999999999999743 24899999999999988777776665456789999999999999999988763110 11
Q ss_pred ccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-ccCCcCCCCcEEEEecCCCCc
Q 038509 479 NEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-TNGIKRGNFSHIFLDEAGQAS 555 (806)
Q Consensus 479 ~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-~~~~~~~~Fd~ViIDEAsQ~~ 555 (806)
..+..+..... ..+ ....+..++|+++|........ ........+++||||||-...
T Consensus 103 ~~v~~~~~~~~----~~~----------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 160 (367)
T 1hv8_A 103 LKIAKIYGGKA----IYP----------------QIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML 160 (367)
T ss_dssp CCEEEECTTSC----HHH----------------HHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHH
T ss_pred ceEEEEECCcc----hHH----------------HHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhh
Confidence 12222211100 000 0122346789999976543221 122334578999999994433
No 24
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.60 E-value=1.4e-07 Score=96.68 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHH-HhCCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVY-STREHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll-~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|.+++..++..+ .+++.+|.|||||.+..-.+.+.+ ....+.++|+++||+..++.+.+++...... ..
T Consensus 45 ~~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~ 120 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRCGL---DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIK-ME 120 (230)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-ST
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcc-cC
Confidence 468999999999988743 489999999999987544444333 3335679999999999999999988753111 11
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-ccCCcCCCCcEEEEecCCCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-TNGIKRGNFSHIFLDEAGQA 554 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-~~~~~~~~Fd~ViIDEAsQ~ 554 (806)
...+..+.... ... + ..+.+..++|+++|......+. ...+...++++||||||-..
T Consensus 121 ~~~~~~~~g~~------~~~--------~------~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 178 (230)
T 2oxc_A 121 GLECHVFIGGT------PLS--------Q------DKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178 (230)
T ss_dssp TCCEEEECTTS------CHH--------H------HHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHH
T ss_pred CceEEEEeCCC------CHH--------H------HHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHh
Confidence 11111111100 000 0 0122346789999986543221 12233457899999999443
No 25
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.57 E-value=1.9e-07 Score=94.85 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|++|+..++... .+++.+|.|||||.+....+.+.+... .+.++|+++||+..++.+.+++.+... ...
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~ 110 (220)
T 1t6n_A 35 EHPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK-YMP 110 (220)
T ss_dssp CCCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTT-TST
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHh-hCC
Confidence 368999999999998743 389999999999988776666654432 235899999999999999888765311 111
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhh--ccceeeeeeecccccc-cccCCcCCCCcEEEEecCCCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL--GRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEAGQA 554 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L--~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEAsQ~ 554 (806)
...+..+.... ... .. .+.+ ...+|+++|....... ....+....+++||||||-..
T Consensus 111 ~~~v~~~~g~~------~~~--------~~------~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~ 170 (220)
T 1t6n_A 111 NVKVAVFFGGL------SIK--------KD------EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 170 (220)
T ss_dssp TCCEEEESCCS------CHH--------HH------HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHH
T ss_pred CceEEEEeCCC------ChH--------HH------HHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHH
Confidence 11222221110 000 00 0111 2358899987554321 122234467899999999444
Q ss_pred c
Q 038509 555 S 555 (806)
Q Consensus 555 ~ 555 (806)
.
T Consensus 171 ~ 171 (220)
T 1t6n_A 171 L 171 (220)
T ss_dssp H
T ss_pred h
Confidence 3
No 26
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.57 E-value=3.2e-07 Score=91.89 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHH-hCCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYS-TREHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~-~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|++|+..++..+ .+++.+|.|||||.+....+.+.+. ...+.++|+++||+..+..+.+++.+... ...
T Consensus 24 ~~~~~~Q~~~i~~~~~~~---~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGR---DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK-HMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTT-TSS
T ss_pred CCCCHHHHHHHHHHccCC---CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHh-hcC
Confidence 478999999999998743 4899999999999876655554432 22456899999999999999888865311 111
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEecCCCCcc
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEAGQASE 556 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEAsQ~~e 556 (806)
...+..+..... . .+.. ......++|+++|....... ........++++||||||-...+
T Consensus 100 ~~~~~~~~g~~~------~--------~~~~-----~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 160 (206)
T 1vec_A 100 GAKVMATTGGTN------L--------RDDI-----MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS 160 (206)
T ss_dssp SCCEEEECSSSC------H--------HHHH-----HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS
T ss_pred CceEEEEeCCcc------H--------HHHH-----HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh
Confidence 112211111100 0 0000 01123568999997654322 11223345789999999943443
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.56 E-value=4.9e-07 Score=99.40 Aligned_cols=128 Identities=17% Similarity=0.132 Sum_probs=82.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|++|+..++...+ ..++|.+|.|||||.+....+.+.+.. ..+.++|+++||...++.+.+++.+.... .
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 102 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPP-RNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKF--T 102 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSC-CCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT--S
T ss_pred CCCCHHHHHHHHHHHcCCC-CeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcc--c
Confidence 4789999999999987521 348999999999999877666554432 25678999999999999999988763110 0
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEecCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEAG 552 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEAs 552 (806)
............ .......++|+++|....... ........++++||||||-
T Consensus 103 ~~~~~~~~~~~~-----------------------~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 103 KITSQLIVPDSF-----------------------EKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp CCCEEEESTTSS-----------------------CTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred CeeEEEEecCch-----------------------hhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 001111100000 001123578899987654322 1222344579999999994
No 28
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.52 E-value=2.6e-07 Score=95.17 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHhc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..+++.|++|+..++..+ .++|.+|.|||||.+.+..+.+.+.. ..+.++|+++||+..+..+.+++..
T Consensus 51 ~~~~~~Q~~ai~~i~~~~---~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGY---DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILA 120 (237)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHH
Confidence 368999999999998743 48999999999998866555554432 2457999999999999999988875
No 29
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.51 E-value=3.7e-06 Score=92.45 Aligned_cols=134 Identities=17% Similarity=0.134 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..|++.|++|+..++.. ..++|.+|.|+|||.+....+.+.+... .+.++|+++||...++.+.+++.+... ..+
T Consensus 29 ~~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-~~~ 104 (391)
T 1xti_A 29 EHPSEVQHECIPQAILG---MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK-YMP 104 (391)
T ss_dssp CSCCHHHHHHHHHHTTT---CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTT-TCT
T ss_pred CCCCHHHHHHHHHHhcC---CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHh-hCC
Confidence 36899999999998874 3489999999999988766666554322 356899999999999999888765311 111
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhh--ccceeeeeeecccccc-cccCCcCCCCcEEEEecCCCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL--GRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEAGQA 554 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L--~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEAsQ~ 554 (806)
...+..+.... ... . . ...+ ..++|+++|....... .........+++||||||-..
T Consensus 105 ~~~~~~~~g~~------~~~--~---~---------~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~ 164 (391)
T 1xti_A 105 NVKVAVFFGGL------SIK--K---D---------EEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 164 (391)
T ss_dssp TCCEEEECTTS------CHH--H---H---------HHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHH
T ss_pred CeEEEEEeCCC------CHH--H---H---------HHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHH
Confidence 11222221110 000 0 0 0111 2357899987654322 122234467999999999444
Q ss_pred cc
Q 038509 555 SE 556 (806)
Q Consensus 555 ~e 556 (806)
.+
T Consensus 165 ~~ 166 (391)
T 1xti_A 165 LE 166 (391)
T ss_dssp TS
T ss_pred hh
Confidence 33
No 30
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.50 E-value=5.9e-07 Score=92.76 Aligned_cols=133 Identities=18% Similarity=0.286 Sum_probs=82.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh--CCCCeEEEEecchHHHHHHHHHHhcccccC
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST--REHSRILVCAASNSAADHMLERLISNEVAG 475 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~--~~~~rILv~apSN~Aad~l~erL~~~~~~~ 475 (806)
+..+++.|++|+..++..+ .+++.+|.|||||.+..-.+.+.+.. ..+.++|+++||+..+..+.+++.+....
T Consensus 49 ~~~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~- 124 (245)
T 3dkp_A 49 FQMPTPIQMQAIPVMLHGR---ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEG- 124 (245)
T ss_dssp CCSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTT-
T ss_pred CCCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcc-
Confidence 3478999999999998743 38999999999998865555555432 24568999999999999999988753110
Q ss_pred cccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccccc---CCcCCCCcEEEEecCC
Q 038509 476 IKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTN---GIKRGNFSHIFLDEAG 552 (806)
Q Consensus 476 ~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~---~~~~~~Fd~ViIDEAs 552 (806)
. ...+..+ ...... ... + .......++|+++|......+... .+...++++||||||-
T Consensus 125 ~-~~~~~~~----------~~~~~~----~~~-~---~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah 185 (245)
T 3dkp_A 125 T-GFRIHMI----------HKAAVA----AKK-F---GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESD 185 (245)
T ss_dssp S-CCCEECC----------CHHHHH----HTT-T---STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHH
T ss_pred c-CceEEEE----------ecCccH----HHH-h---hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChH
Confidence 0 0011100 000000 000 0 011124578999997554322211 2344578999999994
Q ss_pred C
Q 038509 553 Q 553 (806)
Q Consensus 553 Q 553 (806)
.
T Consensus 186 ~ 186 (245)
T 3dkp_A 186 K 186 (245)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.50 E-value=6e-06 Score=91.56 Aligned_cols=131 Identities=19% Similarity=0.150 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|++|+..++... .++|.+|.|||||.+....+.+.+... .+.++|+++||...+..+.+++...... .
T Consensus 61 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 135 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY--M 135 (414)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGG--S
T ss_pred CCCCHHHHHHhHHHhCCC---CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcc--c
Confidence 378999999999999743 389999999999998766666554332 5678999999999999999988763110 0
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccc-ccccCCcCCCCcEEEEecCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSL-LNTNGIKRGNFSHIFLDEAG 552 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~-l~~~~~~~~~Fd~ViIDEAs 552 (806)
...+....... ...... .. ......+|+++|...... +....+....+++||||||-
T Consensus 136 ~~~~~~~~~~~----~~~~~~-------~~-------~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 136 GASCHACIGGT----NVRAEV-------QK-------LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp CCCEEECCCCT----THHHHH-------HH-------HTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred CceEEEEECCc----chHHHH-------HH-------HhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 11111111100 000000 00 011456899998754322 22223345678999999994
No 32
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.48 E-value=4.3e-07 Score=106.48 Aligned_cols=149 Identities=18% Similarity=0.206 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHhC--CCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-------CCCeEEEEecchHHHHHHH-HHHh
Q 038509 400 SLNEEQTRSVEIILGC--KGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-------EHSRILVCAASNSAADHML-ERLI 469 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~--~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-------~~~rILv~apSN~Aad~l~-erL~ 469 (806)
.|++.|.+|+..++.. .+..-++|.+|.|||||.+++.++..++... ...++|+++|++..++... +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 7999999999988751 1123379999999999999988888888765 6789999999999998887 3332
Q ss_pred cccccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-----ccCCcCCCCc
Q 038509 470 SNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-----TNGIKRGNFS 544 (806)
Q Consensus 470 ~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-----~~~~~~~~Fd 544 (806)
... ..+..+. ....-...+|+++|........ ...+...+|+
T Consensus 258 ~~~------~~~~~~~---------------------------~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PFG------DARHKIE---------------------------GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TTC------SSEEECC---------------------------C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hcc------hhhhhhh---------------------------ccCCCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 210 0111111 0011135678888876654321 1234456799
Q ss_pred EEEEecCCCCcch--hHHHHHhhcccCCCEEEEecCCCC
Q 038509 545 HIFLDEAGQASEP--ESMIPIANLCTKQTVVVLAGDPKQ 581 (806)
Q Consensus 545 ~ViIDEAsQ~~ep--e~li~L~~l~~~~~~lVLvGDp~Q 581 (806)
+||||||-..... ..+..+.........+.|-|=|.+
T Consensus 305 lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~ 343 (590)
T 3h1t_A 305 LIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLR 343 (590)
T ss_dssp EEEESCCC---------CHHHHHHSTTSEEEEEESSCSC
T ss_pred EEEEECCccccccchHHHHHHHHhCCcceEEEecccccc
Confidence 9999999554432 233333323333345666666554
No 33
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.48 E-value=7.8e-07 Score=102.14 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=89.5
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.|++.|.+|+..++... -.+|.||.|+|||.+.+..+.+.+.. ...++|+++|+...++...+++.+.. .....
T Consensus 113 ~l~~~Q~~ai~~~~~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~~~--~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYR--LFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHHHS---EEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHHTT--SSCGG
T ss_pred CCCHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHHhh--cCCcc
Confidence 79999999999998743 37999999999999998888777754 34599999999999999999986521 11112
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhH
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPES 559 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~ 559 (806)
.+..+....... .......+|+++|..+.... .......|++||||||.....+ .
T Consensus 187 ~v~~~~~~~~~~----------------------~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~~~-~ 241 (510)
T 2oca_A 187 MIKKIGGGASKD----------------------DKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLATGK-S 241 (510)
T ss_dssp GEEECGGGCCTT----------------------GGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCCHH-H
T ss_pred ceEEEecCCccc----------------------cccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCCcc-c
Confidence 333332221100 01224578999998754321 1122346899999999444444 4
Q ss_pred HHHH
Q 038509 560 MIPI 563 (806)
Q Consensus 560 li~L 563 (806)
+..+
T Consensus 242 ~~~i 245 (510)
T 2oca_A 242 ISSI 245 (510)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 34
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.47 E-value=8.2e-07 Score=92.29 Aligned_cols=130 Identities=16% Similarity=0.108 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|++|+..++..+ .+++.+|.|||||.+..-.+.+.+... .+.++|+++||+..+..+.+++.+.... .
T Consensus 64 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-~- 138 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGR---DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS-I- 138 (249)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGG-G-
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhcc-C-
Confidence 478999999999998743 489999999999998666665544433 4568999999999999999887653110 0
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccc--cCCcCCCCcEEEEecCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNT--NGIKRGNFSHIFLDEAG 552 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~--~~~~~~~Fd~ViIDEAs 552 (806)
...+..+.... ... .. .......++|+++|......... ..+....+++||||||-
T Consensus 139 ~~~~~~~~g~~------~~~-~~------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah 196 (249)
T 3ber_A 139 GVQSAVIVGGI------DSM-SQ------------SLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD 196 (249)
T ss_dssp TCCEEEECTTS------CHH-HH------------HHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH
T ss_pred CeeEEEEECCC------ChH-HH------------HHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh
Confidence 01111111110 000 00 01122467899999755432211 22344578999999994
No 35
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.46 E-value=6.6e-07 Score=95.81 Aligned_cols=132 Identities=18% Similarity=0.116 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHH-HhCCCCeEEEEecchHHHHHHHHHHhcccccCc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVY-STREHSRILVCAASNSAADHMLERLISNEVAGI 476 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll-~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~ 476 (806)
+..+++.|.+|+..++...+ .-+++.+|.|||||.+.+-.+.+.+ ....+.++|+++||+..|..+.+.+...... .
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~-~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~-~ 189 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPP-QNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF-Y 189 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSC-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-S
T ss_pred CCCCCHHHHHHHHHHHcCCC-CeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh-C
Confidence 34789999999999987421 2489999999999987543343333 2224458999999999999998877653211 1
Q ss_pred ccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-c-cCCcCCCCcEEEEecCCC
Q 038509 477 KENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-T-NGIKRGNFSHIFLDEAGQ 553 (806)
Q Consensus 477 ~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-~-~~~~~~~Fd~ViIDEAsQ 553 (806)
....+.-...... . ........+|+++|......+. . ..+...++++||||||-.
T Consensus 190 ~~~~~~~~~~~~~-~---------------------~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 190 PELKLAYAVRGNK-L---------------------ERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp TTCCEEEESTTCC-C---------------------CTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred CCcEEEEEeCCcc-H---------------------hhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 1111111111000 0 0001234579999976542221 1 123345789999999943
No 36
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.46 E-value=1.2e-06 Score=96.98 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHhc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
+..+++.|++|+..++... ...++|.+|.|||||.+....+.+.+.. ..+.++|+++||...+..+.+++.+
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 117 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 117 (412)
T ss_dssp CCSCCHHHHHHHHHHHSSS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCC-CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHH
Confidence 3478999999999999742 1358999999999998865555544432 2445899999999999999887765
No 37
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.45 E-value=6.3e-07 Score=93.93 Aligned_cols=69 Identities=17% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-----CCCCeEEEEecchHHHHHHHHHHhc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-----REHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-----~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..+++.|.+++..++..++ +++.||.|||||.+..-.+.+.+.. ..+.++|+++||+..|..+.+++.+
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~---~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 148 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRD---LLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE 148 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCC---CEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCc---EEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 3689999999999998543 7999999999999866666655543 2467899999999999999988876
No 38
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.42 E-value=8.9e-07 Score=91.40 Aligned_cols=132 Identities=17% Similarity=0.104 Sum_probs=82.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh------CCCCeEEEEecchHHHHHHHHHHhcc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST------REHSRILVCAASNSAADHMLERLISN 471 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~------~~~~rILv~apSN~Aad~l~erL~~~ 471 (806)
+..+++.|.+|+..++..+ .+++.+|.|||||.+..-.+.+.+.. ..+.++|+++||+..+..+.+.+.+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~g~---~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSGL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CCSCCHHHHHHHHHHHHTC---CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCC---CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 3479999999999998743 48999999999998865555554442 23568999999999999998877652
Q ss_pred cccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEec
Q 038509 472 EVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDE 550 (806)
Q Consensus 472 ~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDE 550 (806)
... . ...+..+... ..... . .......++|+++|......+ ........++++|||||
T Consensus 126 ~~~-~-~~~~~~~~g~------~~~~~-~------------~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 126 CRA-C-RLKSTCIYGG------APKGP-Q------------IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp HHH-T-TCCEEEECTT------SCHHH-H------------HHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred Hhh-c-CceEEEEECC------CChHH-H------------HHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 110 0 0111111110 00000 0 001123478999997554321 22223445789999999
Q ss_pred CCC
Q 038509 551 AGQ 553 (806)
Q Consensus 551 AsQ 553 (806)
|-.
T Consensus 185 ah~ 187 (242)
T 3fe2_A 185 ADR 187 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 943
No 39
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.39 E-value=6.2e-07 Score=98.74 Aligned_cols=130 Identities=19% Similarity=0.161 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..|++.|++|+..++... .++|.+|.|||||.+....+.+.+.. ..+.++|+++|+...++.+.+++.+.... .
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~ 116 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH--M 116 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT--S
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhcc--C
Confidence 478999999999999743 37999999999998865555554432 24669999999999999998887652110 0
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEecCCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEAGQ 553 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEAsQ 553 (806)
...+..+.... .. .+ ....+..++|+++|....... ........++++||||||-.
T Consensus 117 ~~~~~~~~g~~------~~--------~~------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~ 173 (394)
T 1fuu_A 117 DIKVHACIGGT------SF--------VE------DAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 173 (394)
T ss_dssp CCCEEEECSSC------CH--------HH------HHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred CeeEEEEeCCC------ch--------HH------HHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH
Confidence 11111111100 00 00 012234678999997654321 22233446799999999943
No 40
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.38 E-value=3.9e-07 Score=92.49 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHhc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..+++.|++|+..++..+ .+++.+|.|||||.+..-.+.+.+.. ..+.++|+++||+..+..+.+++.+
T Consensus 25 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 94 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE---SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLK 94 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHH
Confidence 368999999999999743 47999999999998866555554432 2457899999999999999888765
No 41
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.37 E-value=2.3e-06 Score=88.86 Aligned_cols=130 Identities=17% Similarity=0.150 Sum_probs=82.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC----------CCCeEEEEecchHHHHHHHHHH
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR----------EHSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~----------~~~rILv~apSN~Aad~l~erL 468 (806)
..+++.|.+|+..++..+ .+++.+|.|||||.+..-.+.+.+... .+.++|+++||+..+..+.+++
T Consensus 44 ~~~~~~Q~~~i~~i~~~~---~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHR---DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 479999999999998743 489999999999988766666555422 2358999999999999999888
Q ss_pred hcccccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-ccCCcCCCCcEEE
Q 038509 469 ISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-TNGIKRGNFSHIF 547 (806)
Q Consensus 469 ~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-~~~~~~~~Fd~Vi 547 (806)
...... . ...+..+..... ..... ......++|+++|........ ........+++||
T Consensus 121 ~~~~~~-~-~~~~~~~~g~~~----~~~~~---------------~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lV 179 (253)
T 1wrb_A 121 QKFSLN-T-PLRSCVVYGGAD----THSQI---------------REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIV 179 (253)
T ss_dssp HHHHTT-S-SCCEEEECSSSC----SHHHH---------------HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEE
T ss_pred HHHhcc-C-CceEEEEECCCC----HHHHH---------------HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEE
Confidence 653110 0 111111111100 00000 011235689999986543221 1223345789999
Q ss_pred EecCC
Q 038509 548 LDEAG 552 (806)
Q Consensus 548 IDEAs 552 (806)
||||-
T Consensus 180 iDEah 184 (253)
T 1wrb_A 180 LDEAD 184 (253)
T ss_dssp EETHH
T ss_pred EeCHH
Confidence 99993
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.37 E-value=1.5e-06 Score=97.79 Aligned_cols=129 Identities=19% Similarity=0.146 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.|.+.|++++..++.. ..+|.+|.|+|||.+....+.+.+. .++.++|+++|+.+.++...+.+.+.. .....
T Consensus 9 ~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~--~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLF--NLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHB--CSCGG
T ss_pred CccHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHh--Ccchh
Confidence 6899999999998874 4899999999999998888887766 467899999999999999999987631 11112
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEecCCCCc
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEAGQAS 555 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEAsQ~~ 555 (806)
.+..+..... .. + .......++|+++|....... ....+....|++||||||-...
T Consensus 82 ~v~~~~g~~~------~~--------~------~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~ 138 (494)
T 1wp9_A 82 KIVALTGEKS------PE--------E------RSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAV 138 (494)
T ss_dssp GEEEECSCSC------HH--------H------HHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCS
T ss_pred heEEeeCCcc------hh--------h------hhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccC
Confidence 2322221111 00 0 011234678999998655422 2223345689999999995554
No 43
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.36 E-value=1.5e-06 Score=96.17 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=85.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..|++.|++|+..++..+ .++|.+|.|||||.+....+.+.+... .+.++|+++||...++.+.+++...... .
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~- 116 (400)
T 1s2m_A 42 EKPSPIQEEAIPVAITGR---DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKH-C- 116 (400)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-T-
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcc-c-
Confidence 468999999999999743 389999999999987766665554322 4568999999999999998888753110 0
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-ccCCcCCCCcEEEEecCCCCcc
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-TNGIKRGNFSHIFLDEAGQASE 556 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-~~~~~~~~Fd~ViIDEAsQ~~e 556 (806)
...+..+..... . .... ......++|+++|........ ........+++||||||-....
T Consensus 117 ~~~~~~~~g~~~------~--------~~~~-----~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 117 GISCMVTTGGTN------L--------RDDI-----LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS 177 (400)
T ss_dssp TCCEEEECSSSC------H--------HHHH-----HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS
T ss_pred CceEEEEeCCcc------h--------HHHH-----HHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh
Confidence 111111111100 0 0000 011245789999975542221 1223345789999999944555
Q ss_pred hh
Q 038509 557 PE 558 (806)
Q Consensus 557 pe 558 (806)
..
T Consensus 178 ~~ 179 (400)
T 1s2m_A 178 RD 179 (400)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.32 E-value=2.4e-06 Score=97.03 Aligned_cols=138 Identities=22% Similarity=0.212 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.|++.|.+|+..++... -.+|.||.|+|||.+....+.++ +.++|+++|+.+.+....+++.+. .. .
T Consensus 93 ~l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~---~~--~ 159 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF---GE--E 159 (472)
T ss_dssp CBCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG---CG--G
T ss_pred CcCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhC---CC--c
Confidence 79999999999988643 38999999999999877766654 579999999999999999998761 11 1
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhH
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPES 559 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~ 559 (806)
.+..+..... ...+|+++|......... .....|++||||||-....+..
T Consensus 160 ~v~~~~g~~~----------------------------~~~~Ivv~T~~~l~~~~~--~~~~~~~liIvDEaH~~~~~~~ 209 (472)
T 2fwr_A 160 YVGEFSGRIK----------------------------ELKPLTVSTYDSAYVNAE--KLGNRFMLLIFDEVHHLPAESY 209 (472)
T ss_dssp GEEEBSSSCB----------------------------CCCSEEEEEHHHHHHTHH--HHTTTCSEEEEETGGGTTSTTT
T ss_pred ceEEECCCcC----------------------------CcCCEEEEEcHHHHHHHH--HhcCCCCEEEEECCcCCCChHH
Confidence 1222221110 135788888765432211 1124699999999966555543
Q ss_pred HHHHhhcccCCCEEEEecCCCC
Q 038509 560 MIPIANLCTKQTVVVLAGDPKQ 581 (806)
Q Consensus 560 li~L~~l~~~~~~lVLvGDp~Q 581 (806)
- .+.........+.|-|=|.+
T Consensus 210 ~-~~~~~~~~~~~l~lSATp~~ 230 (472)
T 2fwr_A 210 V-QIAQMSIAPFRLGLTATFER 230 (472)
T ss_dssp H-HHHHTCCCSEEEEEESCCCC
T ss_pred H-HHHHhcCCCeEEEEecCccC
Confidence 3 33333333334555666653
No 45
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.32 E-value=1.6e-06 Score=93.19 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCccc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKE 478 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~ 478 (806)
..|++.|++|+..++..+ .++|.+|.|||||.+....+.+ .+.++|+++|+...+..+.+++.+.... ..
T Consensus 15 ~~l~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~-----~~~~~liv~P~~~L~~q~~~~~~~~~~~--~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGK---NVVVRAKTGSGKTAAYAIPILE-----LGMKSLVVTPTRELTRQVASHIRDIGRY--MD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHH-----HTCCEEEECSSHHHHHHHHHHHHHHTTT--SC
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEcCCCCcHHHHHHHHHHh-----hcCCEEEEeCCHHHHHHHHHHHHHHhhh--cC
Confidence 378999999999988743 4899999999999876555443 2578999999999999999998753110 01
Q ss_pred ccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-ccCCcCCCCcEEEEecCC
Q 038509 479 NEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-TNGIKRGNFSHIFLDEAG 552 (806)
Q Consensus 479 ~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-~~~~~~~~Fd~ViIDEAs 552 (806)
..+..+.... ... . ....+..++|+++|........ ........|++||||||-
T Consensus 85 ~~~~~~~~~~------~~~--------~------~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah 139 (337)
T 2z0m_A 85 TKVAEVYGGM------PYK--------A------QINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEAD 139 (337)
T ss_dssp CCEEEECTTS------CHH--------H------HHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHH
T ss_pred CcEEEEECCc------chH--------H------HHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChH
Confidence 1121111110 000 0 0122345789999975543221 122234578999999993
No 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.32 E-value=7.1e-07 Score=102.68 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHhcccccCccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLERLISNEVAGIKE 478 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~erL~~~~~~~~~~ 478 (806)
.+++.|++|+..++... ...++|.||.|||||.+....+.+.+... ++.++|+++|++..++.+.+++.+.... . .
T Consensus 141 ~p~~~Q~~ai~~i~~~~-~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~-~-~ 217 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNP-PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY-T-E 217 (508)
T ss_dssp ECCCTTSSSHHHHHCSS-CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTT-S-S
T ss_pred CcHHHHHHHHHHHHcCC-CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCc-c-C
Confidence 68999999999998751 23589999999999998666666554333 4568999999999999999998763110 0 0
Q ss_pred ccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccc-ccccCCcCCCCcEEEEecCC
Q 038509 479 NEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSL-LNTNGIKRGNFSHIFLDEAG 552 (806)
Q Consensus 479 ~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~-l~~~~~~~~~Fd~ViIDEAs 552 (806)
..+.... .. . ........++|+++|...... +....+....|++||||||-
T Consensus 218 ~~~~~~~-~~------------------~----~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH 269 (508)
T 3fho_A 218 VKTAFGI-KD------------------S----VPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEAD 269 (508)
T ss_dssp CCEEC---------------------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHH
T ss_pred eeEEEEe-CC------------------c----ccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechh
Confidence 0000000 00 0 000111257899999765432 22223345679999999994
No 47
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.31 E-value=1.5e-06 Score=96.86 Aligned_cols=127 Identities=18% Similarity=0.240 Sum_probs=81.6
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.+++.|++|+..++..+ .+++.+|.|||||.+....+.+.. ..+.++|+++||...+..+.+++.+... ...
T Consensus 21 ~~~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~ 92 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLAD---EKV 92 (414)
T ss_dssp CCCHHHHHHHHHHTTTC---CEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCC---SSC
T ss_pred CCCHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHcc---CCc
Confidence 57899999999998743 489999999999996555555444 3678999999999999999999986311 111
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhh--ccceeeeeeecccccccccCCcCCCCcEEEEecCC
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL--GRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAG 552 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L--~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAs 552 (806)
.+..+.... ...-. .. ..+.+ ..++|+++|......... .+...++++||||||-
T Consensus 93 ~v~~~~g~~------~~~~~-----~~------~~~~l~~~~~~Iiv~Tp~~l~~~l~-~~~~~~~~~iViDEaH 149 (414)
T 3oiy_A 93 KIFGFYSSM------KKEEK-----EK------FEKSFEEDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDVD 149 (414)
T ss_dssp CEEECCTTS------CHHHH-----HH------HHHHHHHTCCSEEEEEHHHHHHCHH-HHTTCCCSEEEESCHH
T ss_pred eEEEEECCC------ChhhH-----HH------HHHHhhcCCCCEEEECHHHHHHHHH-HhccccccEEEEeChH
Confidence 222222111 10000 00 00111 237899999865532211 1344589999999993
No 48
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.30 E-value=2.1e-06 Score=97.73 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHHHhc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..+++.|.+|+..++... ...+++.||.|||||.+....+.+.+... ...++|+++||...+..+.+++..
T Consensus 113 ~~p~~~Q~~ai~~il~~~-~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CSCCHHHHHHHHHHTSBS-CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC-CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 367888999999998742 13589999999999988655555444322 334899999999999999777765
No 49
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.26 E-value=1.5e-06 Score=96.60 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=83.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
..+++.|++|+..++..+ .+++.+|.|||||.+....+.+.+.. ..+.++|+++||...+..+.+++...... .
T Consensus 58 ~~~~~~Q~~ai~~i~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~- 132 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGR---DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY-M- 132 (410)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-T-
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhcc-C-
Confidence 368999999999998743 38999999999998877666655432 25679999999999999999988753110 0
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccc-ccccCCcCCCCcEEEEecCCCCc
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSL-LNTNGIKRGNFSHIFLDEAGQAS 555 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~-l~~~~~~~~~Fd~ViIDEAsQ~~ 555 (806)
...+..+..... ..... .......+|+++|...... +....+....+++||||||-...
T Consensus 133 ~~~~~~~~g~~~----~~~~~---------------~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 133 NVQCHACIGGTN----VGEDI---------------RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp TCCEEEECTTSC----HHHHH---------------HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHT
T ss_pred CeEEEEEECCCC----HHHHH---------------HHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHH
Confidence 011111110000 00000 0111345788888754322 22223445679999999994333
No 50
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.25 E-value=4.7e-06 Score=96.24 Aligned_cols=134 Identities=11% Similarity=0.122 Sum_probs=88.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHhcccccCc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE---HSRILVCAASNSAADHMLERLISNEVAGI 476 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~---~~rILv~apSN~Aad~l~erL~~~~~~~~ 476 (806)
.|++.|.+|+..++... .++|.+|.|||||.+....+.+.+...+ +.++|+++||...+....+.+.+....
T Consensus 7 ~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-- 81 (556)
T 4a2p_A 7 KARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-- 81 (556)
T ss_dssp -CCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG--
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc--
Confidence 68999999999998743 3899999999999998888888777654 789999999999999998888753110
Q ss_pred ccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccccc-CC-cCCCCcEEEEecCCCC
Q 038509 477 KENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTN-GI-KRGNFSHIFLDEAGQA 554 (806)
Q Consensus 477 ~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~-~~-~~~~Fd~ViIDEAsQ~ 554 (806)
....+..+...... ..........++|+++|.......... .+ ...++++||||||-..
T Consensus 82 ~~~~~~~~~g~~~~-------------------~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~ 142 (556)
T 4a2p_A 82 QGYSVQGISGENFS-------------------NVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 142 (556)
T ss_dssp GTCCEEECCCC------------------------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGC
T ss_pred cCceEEEEeCCCCc-------------------chhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCccc
Confidence 01122222211100 000012234578999998665432222 22 3467899999999555
Q ss_pred cch
Q 038509 555 SEP 557 (806)
Q Consensus 555 ~ep 557 (806)
...
T Consensus 143 ~~~ 145 (556)
T 4a2p_A 143 TGN 145 (556)
T ss_dssp STT
T ss_pred CCc
Confidence 433
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.22 E-value=2.4e-06 Score=102.49 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
+..||+.|.+|+..++... ..++|.||.|||||++....+.+.+.. .+.++++++|+..+|.+..+++......+
T Consensus 28 ~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~~~~~g-- 102 (715)
T 2va8_A 28 IKKLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKDWELIG-- 102 (715)
T ss_dssp CCBCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGGGGGGT--
T ss_pred CCCCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHHhhcCC--
Confidence 4579999999999844332 358999999999999987777665543 35799999999999999999984321111
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccC-CcCCCCcEEEEecCCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNG-IKRGNFSHIFLDEAGQ 553 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~-~~~~~Fd~ViIDEAsQ 553 (806)
..+..+..... ...+.+..++|+++|......+.... .....+++||||||-.
T Consensus 103 -~~v~~~~G~~~----------------------~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 103 -FKVAMTSGDYD----------------------TDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp -CCEEECCSCSS----------------------SCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred -CEEEEEeCCCC----------------------CchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 11111111000 00112346889999975433221111 1134689999999944
No 52
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.21 E-value=4.4e-06 Score=96.23 Aligned_cols=134 Identities=16% Similarity=0.100 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHhcccccCc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE---HSRILVCAASNSAADHMLERLISNEVAGI 476 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~---~~rILv~apSN~Aad~l~erL~~~~~~~~ 476 (806)
.|.+.|.+|+..++... .++|.+|.|+|||.+....+.+.+...+ +.++|+++||...+....+.+.+.... .
T Consensus 4 ~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-L 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-T
T ss_pred CCcHHHHHHHHHHhCCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-C
Confidence 58999999999998643 4899999999999998888888777655 789999999999999988888653110 0
Q ss_pred ccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccC-C-cCCCCcEEEEecCCCC
Q 038509 477 KENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNG-I-KRGNFSHIFLDEAGQA 554 (806)
Q Consensus 477 ~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~-~-~~~~Fd~ViIDEAsQ~ 554 (806)
...+..+..... ...........++|+++|........... + ...++++||||||-..
T Consensus 80 -~~~~~~~~g~~~-------------------~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~ 139 (555)
T 3tbk_A 80 -GYNIASISGATS-------------------DSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNT 139 (555)
T ss_dssp -TCCEEEECTTTG-------------------GGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGC
T ss_pred -CcEEEEEcCCCc-------------------chhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECcccc
Confidence 112222211110 00001122345789999976644322221 2 3456899999999555
Q ss_pred cch
Q 038509 555 SEP 557 (806)
Q Consensus 555 ~ep 557 (806)
...
T Consensus 140 ~~~ 142 (555)
T 3tbk_A 140 SKN 142 (555)
T ss_dssp STT
T ss_pred CCc
Confidence 444
No 53
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.20 E-value=2.7e-06 Score=102.17 Aligned_cols=127 Identities=19% Similarity=0.184 Sum_probs=80.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
+..|++.|.+++..++... ..++|.||.|||||.+..-.+.+.+.. .+.++++++|+.+++.+..+++......++
T Consensus 21 ~~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~~l~~~g~- 96 (720)
T 2zj8_A 21 IESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQDWEKIGL- 96 (720)
T ss_dssp CCBCCHHHHHHHTTTGGGT--CEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTGGGGGGTC-
T ss_pred CCCCCHHHHHHHHHHhcCC--CcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHHHHHhcCC-
Confidence 4478999999999833322 348999999999999875555544432 257999999999999999999853211111
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccC-CcCCCCcEEEEecCC
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNG-IKRGNFSHIFLDEAG 552 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~-~~~~~Fd~ViIDEAs 552 (806)
.+..+..... .....+..++|+++|......+.... .....+++||||||-
T Consensus 97 --~v~~~~G~~~----------------------~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 148 (720)
T 2zj8_A 97 --RVAMATGDYD----------------------SKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIH 148 (720)
T ss_dssp --CEEEECSCSS----------------------CCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGG
T ss_pred --EEEEecCCCC----------------------ccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCc
Confidence 1111111100 00112356889999975543221111 113468999999994
No 54
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.20 E-value=4.6e-06 Score=93.89 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=81.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC------CCCeEEEEecchHHHHHHHHHHhccc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR------EHSRILVCAASNSAADHMLERLISNE 472 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~------~~~rILv~apSN~Aad~l~erL~~~~ 472 (806)
..+++.|++|+..++..+ .+++.+|.|||||.+..-.+.+.+... .+.++|+++||+..|..+.+.+.+..
T Consensus 77 ~~pt~iQ~~ai~~i~~g~---d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGR---DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 478999999999998743 489999999999987555444433322 24589999999999999988887531
Q ss_pred ccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccCCcCCCCcEEEEecC
Q 038509 473 VAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNGIKRGNFSHIFLDEA 551 (806)
Q Consensus 473 ~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~~~~~~Fd~ViIDEA 551 (806)
.. . ...+.-+.. ..... .. .......++|+++|......+ ........++++||||||
T Consensus 154 ~~-~-~~~~~~~~g------g~~~~--------~~-----~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEa 212 (434)
T 2db3_A 154 FE-S-YLKIGIVYG------GTSFR--------HQ-----NECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEA 212 (434)
T ss_dssp TT-S-SCCCCEECT------TSCHH--------HH-----HHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETH
T ss_pred cc-C-CcEEEEEEC------CCCHH--------HH-----HHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccH
Confidence 10 0 000000000 00000 00 001123578999997554322 122234467899999999
Q ss_pred CCC
Q 038509 552 GQA 554 (806)
Q Consensus 552 sQ~ 554 (806)
-..
T Consensus 213 h~~ 215 (434)
T 2db3_A 213 DRM 215 (434)
T ss_dssp HHH
T ss_pred hhh
Confidence 443
No 55
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.18 E-value=2.5e-06 Score=102.11 Aligned_cols=125 Identities=21% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
+..|++.|.+++..++.. ..++|.||.|||||++..-.+.+.+. .+.++++++|+.+.|.+..+++......+
T Consensus 23 ~~~l~~~Q~~~i~~i~~~---~~~lv~apTGsGKT~~~~l~il~~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~g-- 95 (702)
T 2p6r_A 23 IEELFPPQAEAVEKVFSG---KNLLLAMPTAAGKTLLAEMAMVREAI--KGGKSLYVVPLRALAGEKYESFKKWEKIG-- 95 (702)
T ss_dssp --CCCCCCHHHHHHHTTC---SCEEEECSSHHHHHHHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHTTTTTTT--
T ss_pred CCCCCHHHHHHHHHHhCC---CcEEEEcCCccHHHHHHHHHHHHHHH--hCCcEEEEeCcHHHHHHHHHHHHHHHhcC--
Confidence 347899999999996652 35899999999999988777766654 35799999999999999999984311111
Q ss_pred cccEEEccc-CCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccC-CcCCCCcEEEEecCCC
Q 038509 478 ENEILRLNA-TSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNG-IKRGNFSHIFLDEAGQ 553 (806)
Q Consensus 478 ~~~i~Rl~~-~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~-~~~~~Fd~ViIDEAsQ 553 (806)
..+..+.. ..+ ..+.+...+|+++|......+.... .....+++||||||-.
T Consensus 96 -~~v~~~~G~~~~-----------------------~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 96 -LRIGISTGDYES-----------------------RDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp -CCEEEECSSCBC-----------------------CSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred -CEEEEEeCCCCc-----------------------chhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 11111111 000 0012346789999975443221111 1134689999999943
No 56
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.16 E-value=6e-06 Score=91.72 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHH-HHHhCC------------------CCeEEEEecch
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQ-VYSTRE------------------HSRILVCAASN 458 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~q-ll~~~~------------------~~rILv~apSN 458 (806)
+..+++.|++|+..++..+ .++|.+|.|||||.+..-.+.+ +....+ ..++|+++||.
T Consensus 35 ~~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 35 YTRPTPVQKHAIPIIKEKR---DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CCSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCCHHHHHHHHHHccCC---CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 3478999999999988743 4899999999999865544443 333221 15799999999
Q ss_pred HHHHHHHHHHhcccccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccc-cccC
Q 038509 459 SAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLL-NTNG 537 (806)
Q Consensus 459 ~Aad~l~erL~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l-~~~~ 537 (806)
..+..+.+++.+.... . ...+.-+..... ..... ......++|+++|....... ....
T Consensus 112 ~L~~q~~~~~~~~~~~-~-~~~~~~~~g~~~----~~~~~---------------~~~~~~~~I~v~Tp~~l~~~l~~~~ 170 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYR-S-RVRPCVVYGGAD----IGQQI---------------RDLERGCHLLVATPGRLVDMMERGK 170 (417)
T ss_dssp HHHHHHHHHHHHHHTT-S-SCCEEEECSSSC----HHHHH---------------HHHTTCCSEEEECHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCc-C-CceEEEEECCCC----HHHHH---------------HHhhCCCCEEEEChHHHHHHHHcCC
Confidence 9999999988753110 0 011111111000 00000 01123468999997654322 2222
Q ss_pred CcCCCCcEEEEecCC
Q 038509 538 IKRGNFSHIFLDEAG 552 (806)
Q Consensus 538 ~~~~~Fd~ViIDEAs 552 (806)
+....+++||||||-
T Consensus 171 ~~~~~~~~iViDEah 185 (417)
T 2i4i_A 171 IGLDFCKYLVLDEAD 185 (417)
T ss_dssp BCCTTCCEEEESSHH
T ss_pred cChhhCcEEEEEChh
Confidence 344578999999993
No 57
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.10 E-value=1.3e-06 Score=89.08 Aligned_cols=38 Identities=24% Similarity=0.197 Sum_probs=31.3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN 458 (806)
..++|.||||+||||.+..++.++.. .+.+++++.|.-
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~ 50 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKI 50 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEecc
Confidence 46899999999999999988887765 467899987743
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.10 E-value=1.5e-05 Score=91.15 Aligned_cols=149 Identities=19% Similarity=0.210 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHh--CCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 400 SLNEEQTRSVEIILG--CKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~--~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
.|.+.|++++..+.. ..+ .-.++..+.|+|||.+++..+.++....+..++||++|+. .+.+..+.+.+. .+
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~----~~ 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLG-FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKF----AP 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTT-CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHH----CT
T ss_pred cchHHHHHHHHHHHHHhhCC-CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHH----CC
Confidence 799999999986642 111 2368888999999999888888877666678999999954 667766666542 11
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcch
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEP 557 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~ep 557 (806)
...+..+..... ......++|+++|......... +....|++||||||....++
T Consensus 111 ~~~v~~~~g~~~------------------------~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~ 164 (500)
T 1z63_A 111 HLRFAVFHEDRS------------------------KIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNP 164 (500)
T ss_dssp TSCEEECSSSTT------------------------SCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCT
T ss_pred CceEEEEecCch------------------------hccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCH
Confidence 112222211100 0123567899999876543211 34457999999999666554
Q ss_pred h--HHHHHhhcccCCCEEEEecCCCC
Q 038509 558 E--SMIPIANLCTKQTVVVLAGDPKQ 581 (806)
Q Consensus 558 e--~li~L~~l~~~~~~lVLvGDp~Q 581 (806)
. ....+..+. ...++.|-|=|.|
T Consensus 165 ~~~~~~~l~~l~-~~~~l~LTaTP~~ 189 (500)
T 1z63_A 165 QTKIFKAVKELK-SKYRIALTGTPIE 189 (500)
T ss_dssp TSHHHHHHHTSC-EEEEEEECSSCST
T ss_pred hHHHHHHHHhhc-cCcEEEEecCCCC
Confidence 3 334444443 2357888998877
No 59
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.09 E-value=9.7e-06 Score=83.26 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC---CCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR---EHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~---~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.+.+.|.+++..+... ..++|.||.|||||+.+...+....... +..++++.+|+...+..+.+++..
T Consensus 61 p~~~~q~~~i~~i~~g---~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 61 PVKKFESEILEAISQN---SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGGHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC---CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 3678899999998873 3489999999999988776665543322 134899999999999999998875
No 60
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=98.08 E-value=6.7e-06 Score=79.93 Aligned_cols=128 Identities=12% Similarity=0.133 Sum_probs=91.7
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccccE
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEI 481 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~~i 481 (806)
+..|..|+..++.... +..+|+|+.||+||.+.++.+..+.++ .+.+|.++||+.++...+.+...-. ...+
T Consensus 36 ~~~~~~a~~~l~~s~~-~~~iv~g~ggs~~~~~~~a~L~~~a~~-~Gr~V~vLAp~~~s~~~l~~~~~l~------~~t~ 107 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRP-SLAIVSGQGGAAGQRERVAELVMMARE-QGREVQIIAADRRSQMNMKQDERLS------GELI 107 (189)
T ss_dssp HHHHHHHHHHHHHHSC-CEECCBCSSCSHHHHHHHHHHHHHHHH-TTCCEEEECSTTHHHHHHSCTTTCS------SCSS
T ss_pred CccchhHHHHHhccCC-ceEEEecccchHHHHHHHHHHHHHHHh-cCeEEEEEcCchHHHHHHHhhcCcC------ccee
Confidence 5789999999886543 467899999999999977777766654 6899999999999999986654321 1111
Q ss_pred EEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhHHH
Q 038509 482 LRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMI 561 (806)
Q Consensus 482 ~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~li 561 (806)
.+ +. +.........=+++|||||++..--|++.
T Consensus 108 ------t~-----------~~------------------------------ll~~~~~~tp~s~lIVD~AekLS~kE~~~ 140 (189)
T 2l8b_A 108 ------TG-----------RR------------------------------QLLEGMAFTPGSTVIVDQGEKLSLKETLT 140 (189)
T ss_dssp ------ST-----------TT------------------------------TTTTSCCCCCCCEEEEEESSSHHHHHHHH
T ss_pred ------eh-----------hh------------------------------hhcCCCCCCCCCEEEEechhhcCHHHHHH
Confidence 00 00 00001000122599999999999888888
Q ss_pred HHhhcccCCCEEEEecCCCCCCc
Q 038509 562 PIANLCTKQTVVVLAGDPKQLGP 584 (806)
Q Consensus 562 ~L~~l~~~~~~lVLvGDp~QL~P 584 (806)
.+......+.++||+||..|++-
T Consensus 141 Lld~A~~~naqvvll~~~~RqG~ 163 (189)
T 2l8b_A 141 LLDGAARHNVQVLITDSGQRTGT 163 (189)
T ss_dssp HHHHHHHTTCCEEEEESSTTTCS
T ss_pred HHHHHHhcCCEEEEeCCcccccC
Confidence 88877677889999999998543
No 61
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.05 E-value=2.1e-05 Score=93.81 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHhcccccCc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE---HSRILVCAASNSAADHMLERLISNEVAGI 476 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~---~~rILv~apSN~Aad~l~erL~~~~~~~~ 476 (806)
.|.+.|.+++..++... .++|.+|.|+|||.+....+.+.+...+ +.++|+++||...+....+.+.+....
T Consensus 13 ~lr~~Q~~~i~~~l~g~---~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~-- 87 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER-- 87 (696)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT--
T ss_pred CccHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc--
Confidence 79999999999998743 4899999999999988877777665443 278999999999999988887653110
Q ss_pred ccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccccc-CC-cCCCCcEEEEecCCCC
Q 038509 477 KENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTN-GI-KRGNFSHIFLDEAGQA 554 (806)
Q Consensus 477 ~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~-~~-~~~~Fd~ViIDEAsQ~ 554 (806)
....+..+...... ..........++|+++|.......... .+ ....|++||||||-..
T Consensus 88 ~~~~v~~~~g~~~~-------------------~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~ 148 (696)
T 2ykg_A 88 HGYRVTGISGATAE-------------------NVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNT 148 (696)
T ss_dssp TTCCEEEECSSSCS-------------------SSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGC
T ss_pred CCceEEEEeCCccc-------------------cccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcc
Confidence 01122222211100 000111224578999998654332221 12 3457899999999554
Q ss_pred cc
Q 038509 555 SE 556 (806)
Q Consensus 555 ~e 556 (806)
..
T Consensus 149 ~~ 150 (696)
T 2ykg_A 149 SK 150 (696)
T ss_dssp ST
T ss_pred cC
Confidence 43
No 62
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.05 E-value=4.3e-06 Score=99.80 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCC----CeEEEEecchHHHHHH-HHHHhccccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREH----SRILVCAASNSAADHM-LERLISNEVA 474 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~----~rILv~apSN~Aad~l-~erL~~~~~~ 474 (806)
.|.+.|.+|+..++... -++|.+|.|+|||.+....+.+++...+. .++||++|+.+.+... .+++.+....
T Consensus 7 ~l~~~Q~~~i~~il~g~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGK---NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp CCCHHHHHHHHHHHSSC---CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CccHHHHHHHHHHHhCC---CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 68999999999999743 38999999999999988888777654333 7899999999999988 8877653211
Q ss_pred CcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc-------ccCCcCCCCcEEE
Q 038509 475 GIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN-------TNGIKRGNFSHIF 547 (806)
Q Consensus 475 ~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~-------~~~~~~~~Fd~Vi 547 (806)
...+..+...... ...........+|+++|........ ...+....+++||
T Consensus 84 ---~~~v~~~~g~~~~-------------------~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvV 141 (699)
T 4gl2_A 84 ---WYRVIGLSGDTQL-------------------KISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLII 141 (699)
T ss_dssp ---TSCEEEEC----C-------------------CCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEE
T ss_pred ---CceEEEEeCCcch-------------------hhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEE
Confidence 0122222211110 0000122356789999976554211 1223445799999
Q ss_pred EecCCC
Q 038509 548 LDEAGQ 553 (806)
Q Consensus 548 IDEAsQ 553 (806)
||||-.
T Consensus 142 iDEaH~ 147 (699)
T 4gl2_A 142 IDECHH 147 (699)
T ss_dssp EESGGG
T ss_pred EECccc
Confidence 999943
No 63
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.04 E-value=1.5e-05 Score=96.63 Aligned_cols=134 Identities=11% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHhcccccCc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE---HSRILVCAASNSAADHMLERLISNEVAGI 476 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~---~~rILv~apSN~Aad~l~erL~~~~~~~~ 476 (806)
.|.+.|.+|+..++... .++|.+|.|||||.+....+.+.+...+ +.++||++||...+....+++.+....
T Consensus 248 ~l~~~Q~~~i~~~l~~~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~-- 322 (797)
T 4a2q_A 248 KARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-- 322 (797)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG--
T ss_pred CCCHHHHHHHHHHHhCC---CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc--
Confidence 79999999999998743 3799999999999998888888877654 789999999999999998887653110
Q ss_pred ccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccc-cCC-cCCCCcEEEEecCCCC
Q 038509 477 KENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNT-NGI-KRGNFSHIFLDEAGQA 554 (806)
Q Consensus 477 ~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~-~~~-~~~~Fd~ViIDEAsQ~ 554 (806)
....+..+...... ..........++|+++|......... ..+ ...++++||||||-..
T Consensus 323 ~~~~v~~~~g~~~~-------------------~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~ 383 (797)
T 4a2q_A 323 QGYSVQGISGENFS-------------------NVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 383 (797)
T ss_dssp GTCCEEEECCC------------------------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGC
T ss_pred CCceEEEEeCCcch-------------------hhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECcccc
Confidence 01122222211100 00011223467899999765432211 112 3446899999999555
Q ss_pred cch
Q 038509 555 SEP 557 (806)
Q Consensus 555 ~ep 557 (806)
...
T Consensus 384 ~~~ 386 (797)
T 4a2q_A 384 TGN 386 (797)
T ss_dssp STT
T ss_pred CCC
Confidence 443
No 64
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.02 E-value=2e-05 Score=97.51 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.|++.|.+|+..++..+ .++|.||.|||||.+....+..++. ++.++|+++|+.+.+....+++.+
T Consensus 39 ~l~~~Q~~aI~~il~g~---~vlv~apTGsGKTlv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGD---SVFVAAHTSAGKTVVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp CCCHHHHHHHHHHHTTC---EEEEECCTTSCSHHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEECCCCcHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHH
Confidence 69999999999998743 4899999999999987777776654 567999999999999999999986
No 65
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.00 E-value=1.2e-05 Score=101.00 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=88.4
Q ss_pred CCCHHHHHHHHHHHhC---CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCc
Q 038509 400 SLNEEQTRSVEIILGC---KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGI 476 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~---~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~ 476 (806)
.+++.|.+|+..++.. ......+|.||.|+|||.+...++..++. .+.++|+++||...|....+++.+... ..
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~~~-~~ 679 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDRFA-NW 679 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHST-TT
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHHhh-cC
Confidence 5799999999999862 21124799999999999887766655543 567999999999999999988875211 00
Q ss_pred ccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhh--ccceeeeeeecccccccccCCcCCCCcEEEEecCCCC
Q 038509 477 KENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL--GRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQA 554 (806)
Q Consensus 477 ~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L--~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~ 554 (806)
...+.-+.... ...-. ... .+.+ ...+|+++|..... ..+....+++|||||| |.
T Consensus 680 -~i~v~~l~~~~------~~~~~------~~~-----~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEa-H~ 736 (1151)
T 2eyq_A 680 -PVRIEMISRFR------SAKEQ------TQI-----LAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEE-HR 736 (1151)
T ss_dssp -TCCEEEESTTS------CHHHH------HHH-----HHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESG-GG
T ss_pred -CCeEEEEeCCC------CHHHH------HHH-----HHHHhcCCCCEEEECHHHHh----CCccccccceEEEech-Hh
Confidence 01111111100 00000 000 0111 24788999864321 2334457899999999 76
Q ss_pred cchhHHHHHhhcc
Q 038509 555 SEPESMIPIANLC 567 (806)
Q Consensus 555 ~epe~li~L~~l~ 567 (806)
........+..+.
T Consensus 737 ~g~~~~~~l~~l~ 749 (1151)
T 2eyq_A 737 FGVRHKERIKAMR 749 (1151)
T ss_dssp SCHHHHHHHHHHH
T ss_pred cChHHHHHHHHhc
Confidence 7666655555443
No 66
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.00 E-value=2.3e-05 Score=91.50 Aligned_cols=159 Identities=14% Similarity=0.161 Sum_probs=103.3
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.++.+|.+|+..++.... +..+|.|++|+|||+++-.++.++. .+++|||||..|+..+.+-....
T Consensus 175 ~~T~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~~~a~~~l~~~~~~~-------- 240 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIA-----GRAIVTAPAKASTDVLAQFAGEK-------- 240 (671)
T ss_dssp SCCHHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSSCCSCHHHHHHHGGG--------
T ss_pred CCCHHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCCHHHHHHHHHHhhCC--------
Confidence 789999999999887432 4589999999999987766666553 35799999999999887654320
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhH
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPES 559 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~ 559 (806)
..-+.++ +. + ....+.|++|||||+.+.-|..
T Consensus 241 -----------i~~~~Pd--------~~---------~--------------------~~~~~~dlliVDEAAaIp~pll 272 (671)
T 2zpa_A 241 -----------FRFIAPD--------AL---------L--------------------ASDEQADWLVVDEAAAIPAPLL 272 (671)
T ss_dssp -----------CCBCCHH--------HH---------H--------------------HSCCCCSEEEEETGGGSCHHHH
T ss_pred -----------eEEeCch--------hh---------h--------------------hCcccCCEEEEEchhcCCHHHH
Confidence 0001111 00 0 0112479999999988887743
Q ss_pred HHHHhhcccCCCEEEEecCCCCCCceeecchhhhcCCCccHHHHHhhcccccCCCccceecccccccC--hhHHHHhhhh
Q 038509 560 MIPIANLCTKQTVVVLAGDPKQLGPVIYSKDAETFGLGKSYLERLFECEFYRNGDEGYVTKLVRNYRC--HPAILDLPSK 637 (806)
Q Consensus 560 li~L~~l~~~~~~lVLvGDp~QL~PvI~s~~a~~~gl~~Sl~eRL~~~~~~~~~~~~~v~~L~~nYRs--~p~I~~~~n~ 637 (806)
...+ ..-.+++++..-++.. |.+..+.-++...- .+.....|++-.|= +..|..|.++
T Consensus 273 ~~ll----~~~~~v~~~tTv~GYE-----------GtGrgf~lk~~~~L-----~~~~~~~L~~piR~a~~DplE~wl~~ 332 (671)
T 2zpa_A 273 HQLV----SRFPRTLLTTTVQGYE-----------GTGRGFLLKFCARF-----PHLHRFELQQPIRWAQGCPLEKMVSE 332 (671)
T ss_dssp HHHH----TTSSEEEEEEEBSSTT-----------BBCHHHHHHHHHTS-----TTCEEEECCSCSSSCTTCHHHHHHHH
T ss_pred HHHH----hhCCeEEEEecCCcCC-----------CcCcccccccHhhc-----CCCcEEEccCceecCCCCCHHHHHHH
Confidence 3333 2445799998777733 23444433332211 12234568887776 6689999888
Q ss_pred hhc
Q 038509 638 LFY 640 (806)
Q Consensus 638 lfY 640 (806)
++-
T Consensus 333 ~ll 335 (671)
T 2zpa_A 333 ALV 335 (671)
T ss_dssp HHT
T ss_pred hhC
Confidence 873
No 67
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.00 E-value=1.3e-05 Score=79.43 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=30.1
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
..+|.||||+||||.+..++..+.. .+.++++++|.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~--~g~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKL--GKKKVAVFKPK 40 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeec
Confidence 5789999999999999888877765 45789988876
No 68
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.2e-05 Score=97.10 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.|++.|++|+..++... .++|.||.|||||.+...++.+.+. .+.++|+++|+.+.+....+++.+
T Consensus 86 ~L~~~Q~eai~~l~~g~---~vLV~apTGSGKTlva~lai~~~l~--~g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp CCCHHHHHHHHHHHHTC---EEEEECCTTSCHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHhc--cCCeEEEECChHHHHHHHHHHHHH
Confidence 69999999999988743 3899999999999987777776665 468999999999999999998876
No 69
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.97 E-value=3.6e-05 Score=96.18 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.|++.|++|+..++.. ..++|.||.|||||.+....+.+.+. .+.++|+++|+...+....+++.+
T Consensus 184 ~ltp~Q~~AI~~i~~g---~dvLV~ApTGSGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 184 TLDPFQDTAISCIDRG---ESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp CCCHHHHHHHHHHTTT---CCEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC---CCEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 7999999999998763 34899999999999988877777765 468999999999999999999876
No 70
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.95 E-value=1.5e-05 Score=79.31 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=31.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
.+++.||+|+|||+.+..++.++.. .+.++++..|+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~ 45 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPE 45 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 6799999999999999988887764 56899999886
No 71
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.95 E-value=2.5e-05 Score=78.67 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=30.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecch
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN 458 (806)
..++.||.|+|||+.+..++.++.. .+.+++++.|..
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~--~g~kVli~k~~~ 66 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQF--AKQHAIVFKPCI 66 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEECC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 5789999999999999998887765 568999998754
No 72
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.94 E-value=1.3e-05 Score=96.30 Aligned_cols=69 Identities=22% Similarity=0.224 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHhC---CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGC---KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~---~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.|++.|++|+..++.. ......+|+||.|||||.+....+.+.+. .+.++++++||...|....+++.+
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~--~g~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE--AGFQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH--HTSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 7999999999998853 11124799999999999998888877765 357999999999999999998875
No 73
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.93 E-value=5e-05 Score=94.81 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=82.3
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.+++.|.+|+..++..+ .+++.+|.|||||.+..-.+.+.+ ..+.++|+++||...|..+.+++.+.. . ...
T Consensus 78 ~pt~iQ~~ai~~il~g~---dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~--~-~~i 149 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLA--D-EKV 149 (1104)
T ss_dssp CCCHHHHHHHHHHTTTC---CEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTS--C-TTS
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhh--C-CCC
Confidence 58999999999998743 489999999999997666666655 356899999999999999999998632 1 111
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhh--ccceeeeeeecccccccccCCcCCCCcEEEEecC
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL--GRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEA 551 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L--~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEA 551 (806)
.+.-+..... ....-.. .+.+ ..++|+++|......+.. .+...++++||||||
T Consensus 150 ~v~~l~Gg~~----~~er~~~-------------~~~l~~g~~~IlV~Tp~rL~~~l~-~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 150 KIFGFYSSMK----KEEKEKF-------------EKSFEEDDYHILVFSTQFVSKNRE-KLSQKRFDFVFVDDV 205 (1104)
T ss_dssp CEEEECTTCC----TTHHHHH-------------HHHHHTSCCSEEEEEHHHHHHSHH-HHHTSCCSEEEESCH
T ss_pred eEEEEeCCCC----HHHHHHH-------------HHHHhCCCCCEEEECHHHHHHHHH-hhcccCcCEEEEeCC
Confidence 2222211110 0000000 0111 237899999765432211 133457999999999
No 74
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.91 E-value=1.8e-05 Score=92.40 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC-----CCeEEEEecchHHHHHHHHHHhc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE-----HSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~-----~~rILv~apSN~Aad~l~erL~~ 470 (806)
..+++.|.+|+..++...+ ..+++.+|.|||||.+..-.+.+.+.... +.++|+++||...+..+.+++.+
T Consensus 42 ~~~~~~Q~~~i~~il~~~~-~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSED-HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSS-EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCC-CeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 4789999999999994321 24899999999999876665555554332 34899999999999999988875
No 75
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.90 E-value=2e-05 Score=97.21 Aligned_cols=134 Identities=11% Similarity=0.109 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC---CCeEEEEecchHHHHHHHHHHhcccccCc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE---HSRILVCAASNSAADHMLERLISNEVAGI 476 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~---~~rILv~apSN~Aad~l~erL~~~~~~~~ 476 (806)
.|.+.|.+|+..++... -++|.+|.|+|||.+....+.+.+...+ +.++||++||...+....+.+.+.... .
T Consensus 248 ~~r~~Q~~ai~~il~g~---~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~-~ 323 (936)
T 4a2w_A 248 KARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-Q 323 (936)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-T
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-c
Confidence 78999999999998743 3799999999999988777776665444 788999999999999998887652110 0
Q ss_pred ccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccc-cCC-cCCCCcEEEEecCCCC
Q 038509 477 KENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNT-NGI-KRGNFSHIFLDEAGQA 554 (806)
Q Consensus 477 ~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~-~~~-~~~~Fd~ViIDEAsQ~ 554 (806)
...+..+...... ..........++|+++|......... ..+ ...+|++||||||-..
T Consensus 324 -~~~v~~~~G~~~~-------------------~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~ 383 (936)
T 4a2w_A 324 -GYSVQGISGENFS-------------------NVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNT 383 (936)
T ss_dssp -TCCEEEECCC------------------------CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGC
T ss_pred -CceEEEEECCcch-------------------hhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECcccc
Confidence 1122222211100 00011223467899999765433221 112 3346899999999554
Q ss_pred cch
Q 038509 555 SEP 557 (806)
Q Consensus 555 ~ep 557 (806)
...
T Consensus 384 ~~~ 386 (936)
T 4a2w_A 384 TGN 386 (936)
T ss_dssp STT
T ss_pred CCC
Confidence 443
No 76
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.90 E-value=2.3e-05 Score=90.97 Aligned_cols=72 Identities=19% Similarity=0.297 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC-----CCeEEEEecchHHHHHHHHHHhc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE-----HSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~-----~~rILv~apSN~Aad~l~erL~~ 470 (806)
+..+++.|.+|+..++...+ ..+++.+|.|||||.+..-.+.+.+.... +.++|+++||...|..+.+++.+
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~-~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSED-HDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCC-CeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 34789999999999995321 24899999999999886665655554332 34899999999999999988875
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.85 E-value=2.6e-05 Score=96.46 Aligned_cols=159 Identities=16% Similarity=0.196 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN 479 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~ 479 (806)
.|.+.|.+|+..++.... .-++|.++.|+|||.+...++.+++..++..++|+++|+ +.+.+-.+.+.+.. ..
T Consensus 153 ~LrpyQ~eav~~~l~~~~-~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f--~l--- 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHA-PRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF--NL--- 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSS-CEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS--CC---
T ss_pred CCcHHHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh--CC---
Confidence 799999999999887432 347899999999999999989888877677799999999 77777766665421 10
Q ss_pred cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeeccccccc--ccCCcCCCCcEEEEecCCCCcch
Q 038509 480 EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLN--TNGIKRGNFSHIFLDEAGQASEP 557 (806)
Q Consensus 480 ~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~--~~~~~~~~Fd~ViIDEAsQ~~ep 557 (806)
.+.-+. ..... .... ........++|+++|........ ...+....|++||||||......
T Consensus 226 ~v~v~~----------~~~~~-----~~~~--~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~ 288 (968)
T 3dmq_A 226 RFALFD----------DERYA-----EAQH--DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWS 288 (968)
T ss_dssp CCEECC----------HHHHH-----HHHH--TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCB
T ss_pred CEEEEc----------cchhh-----hhhh--hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCC
Confidence 111110 00000 0000 00122346789999876543211 01133457999999999655432
Q ss_pred h-----HHHHHhhcccC-CCEEEEecCCCCC
Q 038509 558 E-----SMIPIANLCTK-QTVVVLAGDPKQL 582 (806)
Q Consensus 558 e-----~li~L~~l~~~-~~~lVLvGDp~QL 582 (806)
. .+..+..++.+ ...+.|-|=|.|-
T Consensus 289 ~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n 319 (968)
T 3dmq_A 289 EDAPSREYQAIEQLAEHVPGVLLLTATPEQL 319 (968)
T ss_dssp TTBCCHHHHHHHHHHTTCSSEEESCSSCSSS
T ss_pred CCcchHHHHHHHHHhhcCCcEEEEEcCCccC
Confidence 2 13334434322 2478888988773
No 78
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.80 E-value=3.9e-05 Score=99.55 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 398 FNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 398 ~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
|..+|+-|.+++..++....+ ++|.+|.|||||.+..-+|.+.+...++.++++++|+.+.|.+..+.+.+
T Consensus 924 f~~fnpiQ~q~~~~l~~~~~n--vlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNSDDN--VFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSCCSC--EEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCc--EEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHH
Confidence 457999999999999875544 89999999999998777788877767788999999999999998887754
No 79
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.73 E-value=3.5e-05 Score=76.44 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=31.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
.++|.||.|+|||+-|..++..... .+.++++++|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~--~~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEccc
Confidence 6899999999999999999887765 45899999875
No 80
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.66 E-value=9.5e-05 Score=74.32 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=30.3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN 458 (806)
...+|.||-|+|||+.+..++.++.. .+.++++..|.-
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~--~g~kvli~kp~~ 66 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIY--AKQKVVVFKPAI 66 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--cCCceEEEEecc
Confidence 35799999999999988888776654 457899998854
No 81
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.62 E-value=0.00028 Score=70.27 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.++..+.+...+.....++++|.||||||||+++...+.++
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45667777777765544569999999999998765555444
No 82
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.57 E-value=0.0013 Score=76.89 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..+++.|.+++..++..+ .++|.+|.|+|||.+..-.+ +. .+.++||++|+.+.+....+++.+
T Consensus 43 ~~~rp~Q~~~i~~il~g~---d~lv~~pTGsGKTl~~~lpa--l~---~~g~~lVisP~~~L~~q~~~~l~~ 106 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK---EVFLVMPTGGGKSLCYQLPA--LC---SDGFTLVICPLISLMEDQLMVLKQ 106 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC---CEEEECCTTSCTTHHHHHHH--HT---SSSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEECCCChHHHHHHHHH--HH---cCCcEEEEeCHHHHHHHHHHHHHh
Confidence 478899999999999843 48999999999997533222 22 356999999999999999998876
No 83
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.57 E-value=0.00022 Score=92.50 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=59.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC---------CCCeEEEEecchHHHHHHH
Q 038509 395 FVPFNSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR---------EHSRILVCAASNSAADHML 465 (806)
Q Consensus 395 ~~~~~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~---------~~~rILv~apSN~Aad~l~ 465 (806)
|..+..||+-|.+++..++....+ ++|.+|-|+|||.+..-+|.+.+... .+.++++++|+.+.|.+..
T Consensus 74 f~g~~~ln~iQs~~~~~al~~~~N--~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~ 151 (1724)
T 4f92_B 74 FEGFKTLNRIQSKLYRAALETDEN--LLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 151 (1724)
T ss_dssp CTTCSBCCHHHHHTHHHHHTCCCC--EEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHcCCCc--EEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHH
Confidence 444568999999999999975544 89999999999988766666655431 3568999999999999998
Q ss_pred HHHhc
Q 038509 466 ERLIS 470 (806)
Q Consensus 466 erL~~ 470 (806)
+.+.+
T Consensus 152 ~~l~~ 156 (1724)
T 4f92_B 152 GSFGK 156 (1724)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 84
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.56 E-value=0.00019 Score=84.88 Aligned_cols=165 Identities=16% Similarity=0.284 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHhC------CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC-----CCeEEEEecchHHHHHHHHHH
Q 038509 400 SLNEEQTRSVEIILGC------KGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE-----HSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~------~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~-----~~rILv~apSN~Aad~l~erL 468 (806)
.|-+.|+++|..+... .+..-.++.-+.|+|||.+++..+..+++..+ ..++||++|+ +.+.+-.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 7899999999987631 11223688889999999999999988877542 3579999997 5555555555
Q ss_pred hcccccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEE
Q 038509 469 ISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFL 548 (806)
Q Consensus 469 ~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViI 548 (806)
.+.... ....+.+....+. .....+..+. .. ......+.|+++|+.+.... ...+....|++||+
T Consensus 134 ~~~~~~---~~~~~~~~~g~~~--~~~~~~~~~~-------~~--~~~~~~~~vvi~ty~~l~~~-~~~l~~~~~~~vI~ 198 (644)
T 1z3i_X 134 GKWLGG---RVQPVAIDGGSKD--EIDSKLVNFI-------SQ--QGMRIPTPILIISYETFRLH-AEVLHKGKVGLVIC 198 (644)
T ss_dssp HHHHGG---GCCEEEECSSCHH--HHHHHHHHHH-------CC--CSSCCSCCEEEEEHHHHHHH-TTTTTTSCCCEEEE
T ss_pred HHHcCC---CeeEEEEeCCCHH--HHHHHHHHHH-------Hh--cCCCCCCcEEEeeHHHHHhh-HHHhhcCCccEEEE
Confidence 542110 1112222211100 0000011110 00 00112467899988665432 13345568999999
Q ss_pred ecCCCCcch--hHHHHHhhcccCCCEEEEecCCCC
Q 038509 549 DEAGQASEP--ESMIPIANLCTKQTVVVLAGDPKQ 581 (806)
Q Consensus 549 DEAsQ~~ep--e~li~L~~l~~~~~~lVLvGDp~Q 581 (806)
|||...-++ .....+..+. ...++.|-|=|-|
T Consensus 199 DEaH~ikn~~~~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 199 DEGHRLKNSDNQTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp TTGGGCCTTCHHHHHHHHHHC-CSEEEEECSSCSG
T ss_pred ECceecCChhhHHHHHHHhcc-cCcEEEEecCccc
Confidence 999665443 3444554443 3458999999988
No 85
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.54 E-value=0.00016 Score=89.33 Aligned_cols=153 Identities=15% Similarity=0.155 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHhC-----------CCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-CCCeEEEEecchHHHHHHHHH
Q 038509 400 SLNEEQTRSVEIILGC-----------KGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-EHSRILVCAASNSAADHMLER 467 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~-----------~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-~~~rILv~apSN~Aad~l~er 467 (806)
.+.+.|..||..++.. ......+|+.+.|||||.+++.++ +++... ...++|++||++..++.+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 5889999999998751 011247999999999999986665 555432 346999999999999999888
Q ss_pred HhcccccCcccccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhh--ccceeeeeeeccccccccc-C-C-cCCC
Q 038509 468 LISNEVAGIKENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREAL--GRYRIIISTYMSSSLLNTN-G-I-KRGN 542 (806)
Q Consensus 468 L~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L--~~~~Vi~~T~~s~~~l~~~-~-~-~~~~ 542 (806)
+..... ..+ ... .-...+. ..+ ...+|+++|.......... . . ....
T Consensus 350 f~~f~~-----~~v---~~~-----~s~~~l~---------------~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 350 YQRFSP-----DSV---NGS-----ENTAGLK---------------RNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp HHTTST-----TCS---SSS-----CCCHHHH---------------HHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred HHHhcc-----ccc---ccc-----cCHHHHH---------------HHhcCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 765211 000 000 0000110 111 2468999998665432111 0 1 1236
Q ss_pred CcEEEEecCCCCcchhHHHHHhhcccCCCEEEEecCCCC
Q 038509 543 FSHIFLDEAGQASEPESMIPIANLCTKQTVVVLAGDPKQ 581 (806)
Q Consensus 543 Fd~ViIDEAsQ~~epe~li~L~~l~~~~~~lVLvGDp~Q 581 (806)
+++||||||-.......+..|....+....+.|-|=|..
T Consensus 402 ~~lvIiDEAHrs~~~~~~~~I~~~~p~a~~lgfTATP~~ 440 (1038)
T 2w00_A 402 QVVFIFDECHRSQFGEAQKNLKKKFKRYYQFGFTGTPIF 440 (1038)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHHHCSSEEEEEEESSCCC
T ss_pred ccEEEEEccchhcchHHHHHHHHhCCcccEEEEeCCccc
Confidence 799999999555444444444433433445666666654
No 86
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.48 E-value=8e-05 Score=92.83 Aligned_cols=126 Identities=20% Similarity=0.156 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccc-
Q 038509 401 LNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKEN- 479 (806)
Q Consensus 401 LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~- 479 (806)
+ +.|.+++..++..+ .+++.||.|||||....-++..+.. .+.++|+++||...|..+.+++...... ....
T Consensus 58 p-~iQ~~ai~~il~g~---dvlv~apTGSGKTl~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~-~~i~~ 130 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKE---SFAATAPTGVGKTSFGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEK-AGVGT 130 (1054)
T ss_dssp C-HHHHHHHHHHHTTC---CEECCCCBTSCSHHHHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTT-TCCSG
T ss_pred H-HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhh-cCCCc
Confidence 7 99999999999743 4899999999999755555544443 4679999999999999999988753111 1000
Q ss_pred --cEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCC
Q 038509 480 --EILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQ 553 (806)
Q Consensus 480 --~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ 553 (806)
.+.-+.... ..... .. ..+.+...+|+++|......+... -.++++||||||-.
T Consensus 131 ~~~v~~~~Gg~------~~~~~------~~-----~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~ 186 (1054)
T 1gku_B 131 ENLIGYYHGRI------PKREK------EN-----FMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDA 186 (1054)
T ss_dssp GGSEEECCSSC------CSHHH------HH-----HHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHH
T ss_pred cceEEEEeCCC------ChhhH------HH-----HHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChhh
Confidence 111111110 00000 00 012233478999998554332211 23789999999943
No 87
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.47 E-value=0.00019 Score=86.43 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHH-hCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYS-TREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~-~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
...|++++..++... ..++|.||.|||||+.+-..+..... ...+.++++++|+..++..+.+++..
T Consensus 95 ~~~q~~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 95 VHAQRDEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 456888888887643 24899999999999954443322111 11256799999999999999988865
No 88
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.38 E-value=0.00037 Score=81.74 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=66.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcccccCcccccEEEcccCCCCCCCCChhhh
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISNEVAGIKENEILRLNATSRPYEDVPTDFI 499 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~~~~~~~~~~i~Rl~~~~r~~~~i~~~~~ 499 (806)
.+++.||.|||||..+...+ +. .+.++|+++||+.+|..+.+++.+.... . .-.+.+..
T Consensus 234 ~vlv~ApTGSGKT~a~~l~l---l~--~g~~vLVl~PTReLA~Qia~~l~~~~g~--~--vg~~vG~~------------ 292 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVPAAY---AA--QGYKVLVLNPSVAATLGFGAYMSKAHGI--D--PNIRTGVR------------ 292 (666)
T ss_dssp EEEEECCTTSCTTTHHHHHH---HH--TTCCEEEEESCHHHHHHHHHHHHHHHSC--C--CEEECSSC------------
T ss_pred eEEEEeCCchhHHHHHHHHH---HH--CCCeEEEEcchHHHHHHHHHHHHHHhCC--C--eeEEECcE------------
Confidence 37999999999997655433 22 3569999999999999999988653111 0 01111100
Q ss_pred hhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCcchhHHH
Q 038509 500 RFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQASEPESMI 561 (806)
Q Consensus 500 ~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~epe~li 561 (806)
..-...+|+++|.... +....+...++++|||||| +........
T Consensus 293 ---------------~~~~~~~IlV~TPGrL--l~~~~l~l~~l~~lVlDEA-H~l~~~~~~ 336 (666)
T 3o8b_A 293 ---------------TITTGAPVTYSTYGKF--LADGGCSGGAYDIIICDEC-HSTDSTTIL 336 (666)
T ss_dssp ---------------EECCCCSEEEEEHHHH--HHTTSCCTTSCSEEEETTT-TCCSHHHHH
T ss_pred ---------------eccCCCCEEEECcHHH--HhCCCcccCcccEEEEccc-hhcCccHHH
Confidence 0113467888886442 2223344557999999999 888776543
No 89
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=97.36 E-value=0.00029 Score=79.51 Aligned_cols=57 Identities=28% Similarity=0.253 Sum_probs=42.9
Q ss_pred HHHHHhCCCCCCEEEEcCCCCChHHH-HHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 409 VEIILGCKGAPPYVIYGPPGTGKTMT-LVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 409 V~~il~~~~~~~~lI~GPPGTGKT~t-lv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
+..++..+ ..+++.||.|||||.. +..++.+++. .+.++|+++||...|+++.+++.
T Consensus 12 i~~~l~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 12 DEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CGGGGSTT--CEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHhcC--CeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc
Confidence 44445433 2369999999999996 5555555554 45799999999999999999875
No 90
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0007 Score=82.04 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHh-CCCCCCEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEEecchHHHHHHHHHHhcccccCcc
Q 038509 400 SLNEEQTRSVEIILG-CKGAPPYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVCAASNSAADHMLERLISNEVAGIK 477 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~-~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~apSN~Aad~l~erL~~~~~~~~~ 477 (806)
.|-+.|+++|..++. .....-.+|.-+.|+|||.+++..+..++.. ....++||++| .+.+.+-.+.+.+. .+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~----~p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKW----AP 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHH----ST
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHH----CC
Confidence 899999999986652 1112237899999999999988888877643 35678999999 45566666666542 11
Q ss_pred cccEEEcccCCCCCCCCChhhhhhhchhhhhccCCchhhhccceeeeeeecccccccccCCcCCCCcEEEEecCCCCc--
Q 038509 478 ENEILRLNATSRPYEDVPTDFIRFCFFEESIFKCPPREALGRYRIIISTYMSSSLLNTNGIKRGNFSHIFLDEAGQAS-- 555 (806)
Q Consensus 478 ~~~i~Rl~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~L~~~~Vi~~T~~s~~~l~~~~~~~~~Fd~ViIDEAsQ~~-- 555 (806)
...+..+..... ....+..+...... .........++|+++|........ ..+...+|++||||||...-
T Consensus 311 ~~~v~~~~g~~~----~r~~~~~~~~~~~~---~~~~~~~~~~dvvitTy~~l~~~~-~~l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 311 DLNCICYMGNQK----SRDTIREYEFYTNP---RAKGKKTMKFNVLLTTYEYILKDR-AELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp TCCEEECCCSSH----HHHHHHHHHSCSCC--------CCCCCSEEEECTTHHHHTH-HHHHTSEEEEEEETTGGGGCCS
T ss_pred CceEEEEeCCHH----HHHHHHHHHhhccc---cccccccccCCEEEecHHHHHhhH-HHHhcCCcceeehhhhhhhcCc
Confidence 222332221111 00011111100000 000123356789999987654321 12334478999999996653
Q ss_pred chhHHHHHhhcccCCCEEEEecCCCC
Q 038509 556 EPESMIPIANLCTKQTVVVLAGDPKQ 581 (806)
Q Consensus 556 epe~li~L~~l~~~~~~lVLvGDp~Q 581 (806)
.......+..+. ...++.|-|=|-|
T Consensus 383 ~s~~~~~l~~l~-~~~rl~LTgTPiq 407 (800)
T 3mwy_W 383 ESSLYESLNSFK-VANRMLITGTPLQ 407 (800)
T ss_dssp SSHHHHHHTTSE-EEEEEEECSCCCS
T ss_pred hhHHHHHHHHhh-hccEEEeeCCcCC
Confidence 333444454443 3457999999977
No 91
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.29 E-value=0.001 Score=74.79 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHhCCC-CCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 402 NEEQTRSVEIILGCKG-APPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~-~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
|..-..++..+....+ ..+++|.||||||||+++......+....++.+++.+..+
T Consensus 113 n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 113 NSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp THHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred hHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4443444444444332 4589999999999998765555555554456777776543
No 92
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.29 E-value=0.00047 Score=70.01 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=30.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecch
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN 458 (806)
..++.|+.|+|||+.+..++.+... .+.++++..|.-
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~--~g~kvli~kp~~ 57 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQI--AQYKCLVIKYAK 57 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT--TTCCEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCeEEEEeecC
Confidence 5799999999999999888877653 578999998853
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.26 E-value=0.00085 Score=77.72 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHH---hCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIIL---GCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il---~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.+-+.|.+++..+. ... ..++|.+|.|||||.+..-.+.+ .+.+++++|||+..++.+.+.+..
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~ 69 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTK 69 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHH
Confidence 35688998766543 322 35899999999998765444333 357999999999999999877764
No 94
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.23 E-value=0.00087 Score=72.47 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=30.1
Q ss_pred CCCcEEEEecCCCCcchhHHHHHhhccc-C--CCEEEE-ecCCCCCCceeecc
Q 038509 541 GNFSHIFLDEAGQASEPESMIPIANLCT-K--QTVVVL-AGDPKQLGPVIYSK 589 (806)
Q Consensus 541 ~~Fd~ViIDEAsQ~~epe~li~L~~l~~-~--~~~lVL-vGDp~QL~PvI~s~ 589 (806)
+.+.+|||||| +.+..+....|..... + ...+|+ ..++.+|.|.|.|.
T Consensus 107 ~~~kvviIdea-d~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 107 GGAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp SSCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CCcEEEEECch-hhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 35789999999 6665555544443332 2 344555 45667788887764
No 95
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.22 E-value=0.00045 Score=78.18 Aligned_cols=49 Identities=31% Similarity=0.302 Sum_probs=39.7
Q ss_pred CCEEEEcCCCCChHHH-HHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMT-LVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~t-lv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
..++|.||.|||||.+ +..++..++. .+.++|+++||...|.++.+++.
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhc
Confidence 3589999999999998 4444444443 45799999999999999999886
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.21 E-value=0.0011 Score=71.09 Aligned_cols=53 Identities=30% Similarity=0.261 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHhCC--CCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 402 NEEQTRSVEIILGCK--GAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 402 N~eQ~~AV~~il~~~--~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
|.....++..++... ...+++|+||||||||+++...+..+... +.+++.+..
T Consensus 19 ~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~ 73 (324)
T 1l8q_A 19 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA 73 (324)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH
T ss_pred HHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH
Confidence 444445555555433 23579999999999998755544444432 566766654
No 97
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.17 E-value=0.00051 Score=73.43 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=31.8
Q ss_pred CCcEEEEecCCCCcchhHHHHHhhccc---CCCEEEEe-cCCCCCCceeecc
Q 038509 542 NFSHIFLDEAGQASEPESMIPIANLCT---KQTVVVLA-GDPKQLGPVIYSK 589 (806)
Q Consensus 542 ~Fd~ViIDEAsQ~~epe~li~L~~l~~---~~~~lVLv-GDp~QL~PvI~s~ 589 (806)
.+.+|||||| +.+..+..-.|..... ..+.+|++ -++..+.|.|.|.
T Consensus 82 ~~kvviIdea-d~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR 132 (305)
T 2gno_A 82 TRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR 132 (305)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred CceEEEeccH-HHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce
Confidence 5789999999 6666655555544332 24566665 4677788888877
No 98
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00069 Score=72.20 Aligned_cols=41 Identities=22% Similarity=0.423 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.++..+.+...+.....+++++.||||||||+++...+..+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56667777777754444569999999999998765544443
No 99
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.12 E-value=0.0012 Score=74.07 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=38.8
Q ss_pred CEEEEcCCCCChHHHHHHHHH-HHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL-QVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~-qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
.++|.||.|||||.+..-.+. .++. .+.++|+++||...|+++.+.+.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC
Confidence 479999999999998644444 4444 45799999999999999988875
No 100
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.08 E-value=0.001 Score=70.70 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+...+.+...+.....+.++|.||||||||+++...+.++
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 26 NKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 44556666666665444559999999999998765555444
No 101
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.05 E-value=0.0016 Score=69.16 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
++...+.+...+.....++++++||||||||+++...+..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 45666666666655444569999999999998765555444
No 102
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.03 E-value=0.00031 Score=80.87 Aligned_cols=64 Identities=16% Similarity=0.269 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 399 NSLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 399 ~~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..+.+.|.+|+..++..+ .++|.+|.|+|||.+.. +-.+. ...++|+++|+.+.+....+++..
T Consensus 24 ~~~r~~Q~~~i~~il~g~---d~lv~apTGsGKTl~~~--lp~l~---~~g~~lvi~P~~aL~~q~~~~l~~ 87 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGR---DCLVVMPTGGGKSLCYQ--IPALL---LNGLTVVVSPLISLMKDQVDQLQA 87 (523)
T ss_dssp SSCCTTHHHHHHHHHTTC---CEEEECSCHHHHHHHHH--HHHHH---SSSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCcHHHHHHH--HHHHH---hCCCEEEECChHHHHHHHHHHHHH
Confidence 367889999999999743 47999999999996533 22232 246899999999999999999876
No 103
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.02 E-value=0.0011 Score=77.84 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=39.8
Q ss_pred CCEEEEcCCCCChHHHH-HHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMTL-VEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tl-v~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
..+++.||.|||||.+. ..++..+.. .+.++|+++||+..|+++.+++.
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhc
Confidence 34899999999999984 445555544 45799999999999999998885
No 104
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.01 E-value=0.00094 Score=77.18 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHH---hCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIIL---GCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il---~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.+.+.|.+++..+. ... ..+++.+|.|||||.+..-.+ +. .+.+++++|||+..++.+.+.+..
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~--~~---~~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLG--MQ---LKKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHH--HH---HTCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHH--Hh---CCCcEEEEcCCHHHHHHHHHHHHh
Confidence 46788999876543 222 358999999999996543322 22 257999999999999999987765
No 105
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.00 E-value=0.00077 Score=79.80 Aligned_cols=51 Identities=27% Similarity=0.281 Sum_probs=39.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.||.|||||.+..-.+.+.+.. .+.++|+++||...|.++.+++..
T Consensus 242 ~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 242 QLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp CEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhc
Confidence 348999999999999854444433322 457999999999999999998864
No 106
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.0014 Score=59.96 Aligned_cols=80 Identities=10% Similarity=0.138 Sum_probs=64.0
Q ss_pred EEeeccCCCCCcceeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccccccC
Q 038509 45 IISVPFPFVQGKPQSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSIED 124 (806)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (806)
.+....+|+ .+.+|+++..+|.|+|+|..+..+. |....-|+++ |. .
T Consensus 27 ~~p~~l~fg-----~~~v~~~~~~~~~l~N~g~~~~~f~------~~~~~~F~i~---P~-------------------~ 73 (122)
T 2ys4_A 27 DFPDKLNFS-----TCPVKYSTQKILLVRNIGNKNAVFH------IKTCRPFSIE---PA-------------------I 73 (122)
T ss_dssp CCCSEECCC-----SEESSSCEEEEEEEECCSSSCEEEE------EECCTTEEEE---SS-------------------E
T ss_pred CCCCeeecC-----CeecCCeEEEEEEEEECCCCCEEEE------EecCCCeEEE---CC-------------------c
Confidence 344457888 8999999999999999999999862 3333445542 22 2
Q ss_pred eeeCCCCeEEEEEEEecCCCceeeEEEEEEecC
Q 038509 125 RVLQPLRTLTIWLSCKPKEMGLHKSVVQFDIGD 157 (806)
Q Consensus 125 ~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~f~~ 157 (806)
..|.||++..+.|+|+|+..|.|.+.+.+.+.+
T Consensus 74 g~L~pg~~~~i~V~F~P~~~g~~~~~l~v~~~~ 106 (122)
T 2ys4_A 74 GTLNVGESMQLEVEFEPQSVGDHSGRLIVCYDT 106 (122)
T ss_dssp EEECTTCEEEEEEEECCSSSBCCCCBCEEEESS
T ss_pred CEECCCCEEEEEEEEEcCCCccEEEEEEEEECC
Confidence 479999999999999999999999999988854
No 107
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.89 E-value=0.0012 Score=74.28 Aligned_cols=50 Identities=28% Similarity=0.318 Sum_probs=39.7
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.++|.||.|||||.+..-.+.+.+.. .+.++|+++||...|.++.+++..
T Consensus 10 ~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp EEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHhc
Confidence 48999999999999864444443332 357999999999999999998864
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.86 E-value=0.0084 Score=60.02 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHhCCC-CCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKG-APPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~-~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+.+.+.+...+.... ..+++|.||||||||+++...+..+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556666666664332 2358999999999998765554443
No 109
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.81 E-value=0.0038 Score=66.77 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhCCCCC-CEEEEcCCCCChHHHHHHH
Q 038509 401 LNEEQTRSVEIILGCKGAP-PYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 401 LN~eQ~~AV~~il~~~~~~-~~lI~GPPGTGKT~tlv~~ 438 (806)
-+++..+.+...+.....+ ++++.||||||||+++...
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHH
Confidence 4677778888877644333 4567777999999875443
No 110
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.61 E-value=0.013 Score=64.44 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.|++.|+..+..+-.. ...+|..|-+.|||++++..+...+...++.+|+++++|...|..+.+++..
T Consensus 163 ~L~p~Qk~il~~l~~~---R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHS---SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccC---cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6899999998865432 3379999999999999888777655555778999999999998888776654
No 111
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.60 E-value=0.0038 Score=63.02 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
..|....+.+..........+++|.||||||||+++...+.++.. .+.++..+..
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~--~~~~~~~~~~ 88 (242)
T 3bos_A 34 AGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE--LERRSFYIPL 88 (242)
T ss_dssp -CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEG
T ss_pred CCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEH
Confidence 356667777777665444467999999999999876655554443 2455555443
No 112
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.53 E-value=0.0063 Score=71.92 Aligned_cols=45 Identities=20% Similarity=0.332 Sum_probs=35.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.+++.||.|||||+.+..+ +... .+.++++|+..+|.++.+++.+
T Consensus 157 ~vlv~apTGSGKT~~al~~---l~~~---~~gl~l~PtR~LA~Qi~~~l~~ 201 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYHAIQK---YFSA---KSGVYCGPLKLLAHEIFEKSNA 201 (677)
T ss_dssp EEEEECCTTSSHHHHHHHH---HHHS---SSEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH---HHhc---CCeEEEeCHHHHHHHHHHHHHh
Confidence 4899999999999843333 3332 3458999999999999999876
No 113
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.48 E-value=0.0078 Score=62.35 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=23.1
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
..+++|.||||||||++ +.++.+... ..+..++.+..+
T Consensus 29 ~~~vll~G~~GtGKt~l-a~~i~~~~~-~~~~~~~~v~~~ 66 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELI-ASRLHYLSS-RWQGPFISLNCA 66 (265)
T ss_dssp CSCEEEECCTTSCHHHH-HHHHHHTST-TTTSCEEEEEGG
T ss_pred CCCEEEECCCCCcHHHH-HHHHHHhcC-ccCCCeEEEecC
Confidence 46799999999999975 444443322 122345544433
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.46 E-value=0.0069 Score=67.57 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=25.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+++.||+|+|||||+...+..+.. .+.+|++++
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 4678899999999998888776654 356765544
No 115
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.41 E-value=0.0092 Score=59.08 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=33.5
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecch
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN 458 (806)
.+.++|++++|+||||.....+.+.+. .+.||+++.|-.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g--~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG--HGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEeeC
Confidence 467999999999999999888888775 578999998765
No 116
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.36 E-value=0.0035 Score=60.49 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 403 EEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 403 ~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+++.+.+...+......+++|.||||||||+++...+.++.
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44555566666544445689999999999987665555543
No 117
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.29 E-value=0.015 Score=62.49 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHh-----CCCCCCEEEEcCCCCChHHHHHH
Q 038509 402 NEEQTRSVEIILG-----CKGAPPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 402 N~eQ~~AV~~il~-----~~~~~~~lI~GPPGTGKT~tlv~ 437 (806)
.+...+.+...+. .....+++|.||||||||+++..
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHH
Confidence 4455555555543 23335799999999999986543
No 118
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.24 E-value=0.0091 Score=66.66 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=26.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+++.|+||+|||||+...+..+.+ .+.+|++++
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~ 135 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVC 135 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4689999999999999888876654 456776554
No 119
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.24 E-value=0.0055 Score=68.96 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=21.9
Q ss_pred HHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 408 SVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 408 AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+...+.....++++|+||||||||+++ .++.+.
T Consensus 40 ~L~~~i~~~~~~~vLL~GppGtGKTtlA-r~ia~~ 73 (447)
T 3pvs_A 40 PLPRAIEAGHLHSMILWGPPGTGKTTLA-EVIARY 73 (447)
T ss_dssp HHHHHHHHTCCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCcHHHHH-HHHHHH
Confidence 3444444333356999999999999754 444443
No 120
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.23 E-value=0.009 Score=53.41 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=60.3
Q ss_pred ccCCCCCcceeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccccccCeeeC
Q 038509 49 PFPFVQGKPQSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSIEDRVLQ 128 (806)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (806)
..+|| .+..|+...-+++|+|+|+.+..+.-.. .......-|+++ |+ ...|.
T Consensus 16 ~ldFG-----~v~~g~~~~~~~~l~N~g~~p~~~~~~~-~~~~~~~~f~v~---p~-------------------~g~i~ 67 (112)
T 2e6j_A 16 LLDIG-----KVFTGSAHCYEAILYNKGSIDALFNMTP-PTSALGACFVFS---PK-------------------EGIIE 67 (112)
T ss_dssp EEEEE-----EEESSCCEEEEEEEEECCSSCEEEEECC-CSSHHHHHCEEE---SS-------------------EEEEC
T ss_pred cEecE-----eEEECCEEEEEEEEEECCcceEEEEEec-CCccccCcEEEE---CC-------------------cCEEC
Confidence 36788 8899999999999999999998876521 000000013332 22 34799
Q ss_pred CCCeEEEEEEEecCCCceeeEEEEEEecC
Q 038509 129 PLRTLTIWLSCKPKEMGLHKSVVQFDIGD 157 (806)
Q Consensus 129 ~g~~~~~~~~~~~~~~g~~~~~~~~~f~~ 157 (806)
||++..|.|++.++..|.|.+.+.+...+
T Consensus 68 pg~~~~i~V~f~~~~~g~f~~~i~v~~~g 96 (112)
T 2e6j_A 68 PSGVQAIQISFSSIILGNFEEEFLVNVNG 96 (112)
T ss_dssp TTBCCEEEEEECCCCCEEEEEEECEEESS
T ss_pred CCCEEEEEEEEECCCcceEEEEEEEEECC
Confidence 99999999999999999999999887753
No 121
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.17 E-value=0.024 Score=66.13 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.|++.|+..+..+-. ....+|.+|.|+|||++++..+...+...++.+|+++++|...|..+.+.+..
T Consensus 163 ~l~p~Q~~i~~~l~~---~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS---KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHH---CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhcc---ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 689999999887632 23479999999999999887777666555777999999999999888876654
No 122
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.016 Score=66.46 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHhC-----------------CCCCCEEEEcCCCCChHHHHHHHH
Q 038509 401 LNEEQTRSVEIILGC-----------------KGAPPYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 401 LN~eQ~~AV~~il~~-----------------~~~~~~lI~GPPGTGKT~tlv~~i 439 (806)
-++.+.+.+...+.. ....+++|.||||||||+++...+
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la 98 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVA 98 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 366777777766643 122469999999999998654433
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.11 E-value=0.0064 Score=59.05 Aligned_cols=54 Identities=24% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHh---C---CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 401 LNEEQTRSVEIILG---C---KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 401 LN~eQ~~AV~~il~---~---~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
-++.|++|+..+.. . .....++|.||||||||+++...+..+... .+..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~~~~~~ 74 (180)
T 3ec2_A 15 KNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIRGYFFD 74 (180)
T ss_dssp CSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCCCCEEE
T ss_pred CCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCeEEEEE
Confidence 37889988887642 1 122468999999999998766555444322 344555544
No 124
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.09 E-value=0.0044 Score=59.70 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 403 EEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 403 ~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
+++.+.+...+.......++|.||||||||+++...+..+
T Consensus 28 ~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 28 DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3445555555554444568999999999998766555544
No 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.03 E-value=0.011 Score=58.40 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+++|.||||||||+++...+..+.. .+.+++++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEh
Confidence 56999999999999876554444432 3456665543
No 126
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0035 Score=67.15 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=24.4
Q ss_pred HHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 411 IILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 411 ~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
..+.....+.++|.||||||||+++-..+.++..
T Consensus 38 ~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 38 DSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3343334445899999999999987777766654
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.82 E-value=0.015 Score=61.53 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=18.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+++|.||||||||+++...+..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999998655444444
No 128
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.33 E-value=0.08 Score=63.15 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++-|..++-.++.. . +...+-|||||.+.+--+. +....+..++|+|||...|....+-+..
T Consensus 83 ~pt~VQ~~~ip~ll~G--~---Iaea~TGeGKTlaf~LP~~--l~aL~g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDG--N---IAEMKTGEGKTLTSTLPVY--LNALTGKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp CCCHHHHHHHHHHHTT--S---EEECCTTSCHHHHHHHHHH--HHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhCC--C---EEEccCCcHHHHHHHHHHH--HHHHcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 5689999999888863 2 8999999999976554443 2334567899999999999887776544
No 129
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.31 E-value=0.011 Score=61.82 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHhC-------------CCCCCEEEEcCCCCChHHHHH
Q 038509 401 LNEEQTRSVEIILGC-------------KGAPPYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 401 LN~eQ~~AV~~il~~-------------~~~~~~lI~GPPGTGKT~tlv 436 (806)
-.+++++.+...+.. .....++|.||||||||+++-
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 356676666655421 233469999999999998643
No 130
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.02 Score=61.73 Aligned_cols=41 Identities=34% Similarity=0.576 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
+++..+.+...+.....+.+++.||||||||+++-..+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45555566666655444559999999999998765544443
No 131
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.28 E-value=0.017 Score=60.82 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=18.5
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..++++.||||||||+++- ++.+.+
T Consensus 50 ~~~vll~G~~GtGKT~la~-~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR-RLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHh
Confidence 3579999999999997654 444443
No 132
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.21 E-value=0.013 Score=58.45 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=17.0
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
-++|.||||||||+++...+.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 389999999999998755444
No 133
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=95.20 E-value=0.11 Score=52.45 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=62.9
Q ss_pred CeEEee-ccCCCCCcceeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCccccccccc
Q 038509 43 PVIISV-PFPFVQGKPQSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFS 121 (806)
Q Consensus 43 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (806)
.|.++. ..+|+ .+..|+....+|++.|+|+.|+.+..+++ +. | +++.
T Consensus 2 ~i~~~~~~idFg-----~v~~g~~~~~~~~i~N~g~~pl~i~~~~~----p~--~-~~~~-------------------- 49 (220)
T 2qsv_A 2 PLQVSNARLLFP-----ISMPEDEGVVRLVVNNTDESDLQVAVVSL----PS--F-VSLD-------------------- 49 (220)
T ss_dssp CEEESCSEEECC-----SBCTTCCCEEEEEEEECSSSCEEEEEEEC----CT--T-EECS--------------------
T ss_pred ceEEecCeeEcc-----cccCCCcceEEEEEEeCCCCceEEEeccC----CC--c-eEee--------------------
Confidence 345554 34588 88899999999999999999999987654 11 1 1111
Q ss_pred ccCeeeCCCCeEEEEEEEecCCC---ceeeEEEEEEec
Q 038509 122 IEDRVLQPLRTLTIWLSCKPKEM---GLHKSVVQFDIG 156 (806)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~---g~~~~~~~~~f~ 156 (806)
.+...|.||++-+|.+.|.++.. |.+...+.+...
T Consensus 50 ~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~ 87 (220)
T 2qsv_A 50 DRAFRLQAREPRELNLSLAVPRNMPPGMKDEPLVLEVT 87 (220)
T ss_dssp CCEEEECSSSCEEEEEEECCCTTCCSEEEEEEEEEEEE
T ss_pred eCcceeCCCCceEEEEEEcchhcccCCceeeEEEEEEE
Confidence 13367999999999999998774 999998888874
No 134
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.20 E-value=0.016 Score=59.41 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=15.5
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
.+++|+||||||||+++..
T Consensus 40 ~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.035 Score=60.39 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHH----hCCCCCCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIIL----GCKGAPPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 402 N~eQ~~AV~~il----~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+++.+.+...+ .......++|.||||||||+++...+.++..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344555554433 2232345999999999999987666555543
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.92 E-value=0.016 Score=62.23 Aligned_cols=41 Identities=29% Similarity=0.569 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
+++..+.+...+.....+.+++.||||||||+++-..+..+
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455666666654433559999999999998765444443
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.91 E-value=0.029 Score=56.85 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=37.0
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.||||+|||+.+...+..++. .+.++++++.... .+.+.+++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSSC-HHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccCC-HHHHHHHHHH
Confidence 36899999999999998887777765 4578888876554 4566666653
No 138
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.90 E-value=0.019 Score=61.01 Aligned_cols=49 Identities=10% Similarity=0.076 Sum_probs=37.4
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL 468 (806)
.++|.||||||||+.+...+....+..++.+++.+..-++.....++|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~l 78 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSM 78 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHh
Confidence 5899999999999999998888877545678888877665544444444
No 139
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.89 E-value=0.013 Score=54.68 Aligned_cols=17 Identities=18% Similarity=0.343 Sum_probs=14.8
Q ss_pred CCCEEEEcCCCCChHHH
Q 038509 418 APPYVIYGPPGTGKTMT 434 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~t 434 (806)
..+++|+||||||||++
T Consensus 27 ~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETV 43 (143)
T ss_dssp SSCEEEEEETTCCHHHH
T ss_pred CCcEEEECCCCccHHHH
Confidence 35799999999999974
No 140
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.85 E-value=0.034 Score=51.97 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=17.0
Q ss_pred CCCEEEEcCCCCChHHHHHHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
..+++|+||||||||++ +.++.
T Consensus 24 ~~~vll~G~~GtGKt~l-A~~i~ 45 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTG-ARYLH 45 (145)
T ss_dssp CSCEEEESSTTSSHHHH-HHHHH
T ss_pred CCCEEEECCCCCCHHHH-HHHHH
Confidence 45799999999999975 44443
No 141
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.83 E-value=0.043 Score=64.28 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHHhC-CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 401 LNEEQTRSVEIILGC-KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 401 LN~eQ~~AV~~il~~-~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.-+.|++.+..+... .....+++.+|.|||||....-.+...+.. .+.+|+++|+|+.-+..+.+-+..
T Consensus 4 ~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 4 NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp -CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHH
Confidence 357888887755321 012358999999999997755544444332 357999999999999988776543
No 142
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.71 E-value=0.028 Score=60.09 Aligned_cols=41 Identities=27% Similarity=0.387 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHh----------C--CCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 401 LNEEQTRSVEIILG----------C--KGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 401 LN~eQ~~AV~~il~----------~--~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
-.+.+++++...+. . .....++++||||||||+++ .++...
T Consensus 22 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la-~aia~~ 74 (322)
T 3eie_A 22 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA-KAVATE 74 (322)
T ss_dssp SCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH-HHHHHH
Confidence 35666667666551 1 11124899999999999764 444443
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.68 E-value=0.025 Score=62.97 Aligned_cols=31 Identities=42% Similarity=0.649 Sum_probs=21.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+|++||||||||.+ +.+++.-+ +..++.+..
T Consensus 218 vLLyGPPGTGKTll-AkAiA~e~----~~~f~~v~~ 248 (434)
T 4b4t_M 218 ALMYGPPGTGKTLL-ARACAAQT----NATFLKLAA 248 (434)
T ss_dssp EEEESCTTSSHHHH-HHHHHHHH----TCEEEEEEG
T ss_pred eEEECcCCCCHHHH-HHHHHHHh----CCCEEEEeh
Confidence 89999999999986 44444332 345555544
No 144
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.67 E-value=0.046 Score=64.57 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHhC--CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGC--KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~--~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
.++..|.+|+..++.. .+....++.|.+|||||.+++..+.++ +..+||+||+...|..+.+.|..
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~-----~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL-----GRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh-----CCCEEEEecCHHHHHHHHHHHHH
Confidence 6789999998876532 222246799999999999999877654 35799999999999999999876
No 145
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=94.55 E-value=0.049 Score=54.98 Aligned_cols=71 Identities=20% Similarity=0.285 Sum_probs=55.3
Q ss_pred eeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccccccCeeeCCCCeEEEEEE
Q 038509 59 SILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSIEDRVLQPLRTLTIWLS 138 (806)
Q Consensus 59 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 138 (806)
.+. |+....+|+|+|+|+.|+.+..++..| . -+..+.. ...|.||++.+|.+.
T Consensus 130 ~i~-g~~~~~~f~i~N~G~~pL~I~~v~~sc--g--ct~~~~~----------------------~~~i~PGe~~~i~v~ 182 (220)
T 2qsv_A 130 QLD-GETTKAAIEIRNVGAGPLRLHSVTTRN--P--ALTAVPD----------------------RTEIKPGGSTLLRIA 182 (220)
T ss_dssp ECT-TSCEEEEEEEEECSSSCEEEEEEEECS--T--TEEEEES----------------------CSEECTTCEEEEEEE
T ss_pred ccC-CCeEEEEEEEEECCCCCEEEEEEEeCC--C--CEeeecC----------------------CccCCCCCEEEEEEE
Confidence 556 899999999999999999999887632 1 2222222 245999999999999
Q ss_pred EecCCC-ce----eeEEEEEEec
Q 038509 139 CKPKEM-GL----HKSVVQFDIG 156 (806)
Q Consensus 139 ~~~~~~-g~----~~~~~~~~f~ 156 (806)
+.++.. |. +..++.+-..
T Consensus 183 ~~~~~~~g~~~~~~~~~i~v~~N 205 (220)
T 2qsv_A 183 VDPQVMKAEGWQSIAADISIICN 205 (220)
T ss_dssp ECHHHHHHTTCSEEEEEEEEEES
T ss_pred EecCCCCCcccceeccEEEEEEC
Confidence 999998 98 8877766654
No 146
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.52 E-value=0.028 Score=59.09 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHhC------------CCCCCEEEEcCCCCChHHHHH
Q 038509 402 NEEQTRSVEIILGC------------KGAPPYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 402 N~eQ~~AV~~il~~------------~~~~~~lI~GPPGTGKT~tlv 436 (806)
.+.+++.+...+.. .....++|.||||||||+++-
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 56666666655421 123468999999999998644
No 147
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.51 E-value=0.033 Score=52.60 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..|.++..++..+ ....++|.||+|||||+++..+...+
T Consensus 22 g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 22 TENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677666655544 23468999999999998765544433
No 148
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.50 E-value=0.029 Score=59.72 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH-HhCCCCeEEEEec
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY-STREHSRILVCAA 456 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll-~~~~~~rILv~ap 456 (806)
.+++|+||||||||+++...+.++. . .+.++++++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~--~g~~v~~~~~ 189 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEK--KGVSTTLLHF 189 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--SCCCEEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHh--cCCcEEEEEH
Confidence 5689999999999998776666655 4 3466666553
No 149
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.41 E-value=0.032 Score=62.19 Aligned_cols=31 Identities=35% Similarity=0.711 Sum_probs=20.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+|++||||||||+++ .+++.-+ +..++.+..
T Consensus 218 vLL~GPPGtGKTllA-kAiA~e~----~~~~~~v~~ 248 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLA-KAVAATI----GANFIFSPA 248 (437)
T ss_dssp EEEESCTTSSHHHHH-HHHHHHH----TCEEEEEEG
T ss_pred EEEECCCCCcHHHHH-HHHHHHh----CCCEEEEeh
Confidence 899999999999864 4444332 345555443
No 150
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.38 E-value=0.034 Score=60.29 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=17.6
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+++|.||||||||+++. ++.+.+
T Consensus 72 ~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp EEEEEESTTSSHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHh
Confidence 69999999999998654 444444
No 151
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.38 E-value=0.029 Score=59.42 Aligned_cols=22 Identities=45% Similarity=0.831 Sum_probs=16.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
..++|+||||||||+++ .++..
T Consensus 50 ~~vLL~Gp~GtGKT~la-~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLA-KAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHH-HHHHH
T ss_pred ceEEEECCCCcCHHHHH-HHHHH
Confidence 35899999999999864 44443
No 152
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.36 E-value=0.027 Score=60.74 Aligned_cols=42 Identities=29% Similarity=0.528 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHH-hCCCCCCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIIL-GCKGAPPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 402 N~eQ~~AV~~il-~~~~~~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+++..+++...+ .....+.++|.||||||||+++-..+.+++
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 556666666666 433334599999999999987655444454
No 153
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.35 E-value=0.057 Score=58.38 Aligned_cols=54 Identities=24% Similarity=0.280 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHh----CCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCC-CCeEEEEe
Q 038509 402 NEEQTRSVEIILG----CKGAPPYVIYGPPGTGKTMTLVEAILQVYSTRE-HSRILVCA 455 (806)
Q Consensus 402 N~eQ~~AV~~il~----~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~-~~rILv~a 455 (806)
-+.+.+.+...+. ......++|.||||||||+++...+..+..... +..++.+.
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3455566655554 333457999999999999877665554433221 34444443
No 154
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.32 E-value=0.035 Score=59.50 Aligned_cols=18 Identities=39% Similarity=0.837 Sum_probs=15.1
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++++||||||||+++..
T Consensus 47 ~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp EEEEESSSSSCHHHHHHH
T ss_pred eEEEECCCCccHHHHHHH
Confidence 489999999999986543
No 155
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=94.31 E-value=0.14 Score=61.19 Aligned_cols=64 Identities=16% Similarity=0.049 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
...+-|..++-.++.. -+...+-|||||.+.+-.+. +....+..++|+|||...|....+-+..
T Consensus 111 rP~~VQ~~~ip~Ll~G-----~Iaem~TGeGKTLa~~LP~~--l~aL~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLG-----NVAEMKTGEGKTLTCVLPAY--LNALAGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp CCCHHHHHHHHHHHTT-----EEEECCTTSCHHHHTHHHHH--HHHTTTSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhcC-----CEEEecCCCccHHHHHHHHH--HHHHhCCCeEEEeCCHHHHHHHHHHHHH
Confidence 3478899998877752 29999999999976554432 2223567899999999999877666543
No 156
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.28 E-value=0.022 Score=63.47 Aligned_cols=31 Identities=35% Similarity=0.707 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+|++||||||||+++ .+++.-+ +..++.+..
T Consensus 209 iLL~GPPGtGKT~la-kAiA~~~----~~~~~~v~~ 239 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLV-KAVANST----KAAFIRVNG 239 (428)
T ss_dssp EEEESCTTTTHHHHH-HHHHHHH----TCEEEEEEG
T ss_pred EEEECCCCCCHHHHH-HHHHHHh----CCCeEEEec
Confidence 899999999999864 4444332 345555543
No 157
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.27 E-value=0.042 Score=59.52 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHh----CCCCCCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILG----CKGAPPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 402 N~eQ~~AV~~il~----~~~~~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.+.+.+.+...+. ......++|.||||||||+++...+.++.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566666666552 23345799999999999987766555543
No 158
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.21 E-value=0.022 Score=62.62 Aligned_cols=31 Identities=32% Similarity=0.710 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+|++||||||||.+ +.+++.-+ +..++.+..
T Consensus 185 vLL~GPPGTGKTll-AkAiA~e~----~~~f~~v~~ 215 (405)
T 4b4t_J 185 VILYGPPGTGKTLL-ARAVAHHT----DCKFIRVSG 215 (405)
T ss_dssp EEEESCSSSSHHHH-HHHHHHHH----TCEEEEEEG
T ss_pred eEEeCCCCCCHHHH-HHHHHHhh----CCCceEEEh
Confidence 89999999999986 44444332 345555443
No 159
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.20 E-value=0.02 Score=59.12 Aligned_cols=19 Identities=42% Similarity=0.737 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..++|.||||||||+++..
T Consensus 45 ~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 3589999999999986543
No 160
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.15 E-value=0.023 Score=59.96 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=16.6
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.++++||||||||+++ .+++..+
T Consensus 38 ~lLl~GppGtGKT~la-~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQC-ELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3788999999999864 4444433
No 161
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.98 E-value=0.042 Score=56.46 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=17.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..++|.||||||||+++ .++...
T Consensus 46 ~~vll~G~~GtGKT~la-~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA-KAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHH-HHHHHH
T ss_pred CeEEEECcCCCCHHHHH-HHHHHH
Confidence 35899999999999754 444443
No 162
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.98 E-value=0.038 Score=57.36 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCChHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~ 438 (806)
..++|.||||||||+++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~i 84 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKI 84 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 46899999999999865443
No 163
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.95 E-value=0.051 Score=55.00 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=26.7
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+++.|+||+|||++++..+..+... +.+|+++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 37899999999999998888887763 56665443
No 164
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=93.92 E-value=0.048 Score=59.21 Aligned_cols=22 Identities=41% Similarity=0.762 Sum_probs=16.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.++|+||||||||+++. +++..
T Consensus 86 ~iLL~GppGtGKT~la~-ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAK-AVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHH-HHHHH
T ss_pred eEEEECCCCCcHHHHHH-HHHHH
Confidence 58999999999998654 44433
No 165
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=93.88 E-value=0.099 Score=62.29 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
...+-|..++-.++.. -+...+-|||||.+.+-.+.. ....+.+++|+|||...|....+-+..
T Consensus 74 ~p~~VQ~~~i~~ll~G-----~Iaem~TGsGKTlaf~LP~l~--~~l~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNER-----CIAEMRTGEGKTLTATLPAYL--NALTGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp CCCHHHHHHHHHHHSS-----EEEECCTTSCHHHHHHHHHHH--HHTTSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCC-----eeeeecCCchHHHHHHHHHHH--HHHcCCcEEEEcCCHHHHHHHHHHHHH
Confidence 4578999999877762 189999999999776544432 223567899999999999877766544
No 166
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.03 Score=61.99 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+|++||||||||.++ .+++.-+ +..++.+..
T Consensus 219 vLLyGPPGTGKTlLA-kAiA~e~----~~~fi~v~~ 249 (437)
T 4b4t_I 219 VILYGAPGTGKTLLA-KAVANQT----SATFLRIVG 249 (437)
T ss_dssp EEEESSTTTTHHHHH-HHHHHHH----TCEEEEEES
T ss_pred CceECCCCchHHHHH-HHHHHHh----CCCEEEEEH
Confidence 899999999999864 4444332 345554443
No 167
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.83 E-value=0.062 Score=56.98 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHh-----CCCCCCEEEEcCCCCChHHHHHHH
Q 038509 402 NEEQTRSVEIILG-----CKGAPPYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 402 N~eQ~~AV~~il~-----~~~~~~~lI~GPPGTGKT~tlv~~ 438 (806)
.+...+.+...+. .....+++|.||||||||+++...
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHH
Confidence 3445455554442 123357999999999999865443
No 168
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.82 E-value=0.028 Score=61.11 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=18.6
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..++++.||||||||++ +.++.+.+
T Consensus 51 ~~~vll~GppGtGKT~l-a~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLL-AETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHH-HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHc
Confidence 35699999999999985 45555443
No 169
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.81 E-value=0.031 Score=59.99 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.++++|.||||||||+++ .++...
T Consensus 45 ~~~vLl~G~~GtGKT~la-~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV-RALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHH-HHHHHH
T ss_pred CceEEEECCCCccHHHHH-HHHHHh
Confidence 356999999999999754 444443
No 170
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.67 E-value=0.064 Score=54.30 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=36.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.|+||+|||+.+...+.+.+.. .+.++++++...+ .+.+.+|+..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSC-HHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCC-HHHHHHHHHH
Confidence 368999999999999988877665443 3567888887655 4556666654
No 171
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.61 E-value=0.062 Score=60.65 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 403 EEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 403 ~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
+...+.+..++.......+++.||||||||+++ +.+.+.+.
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la-~~la~~l~ 226 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIA-EGLAQQII 226 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHH-HHHHHHHH
Confidence 444555566665444456899999999999854 55555443
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.60 E-value=0.051 Score=59.01 Aligned_cols=19 Identities=42% Similarity=0.756 Sum_probs=15.7
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..++|.||||||||+++..
T Consensus 118 ~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp SEEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 173
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.53 E-value=0.056 Score=58.69 Aligned_cols=53 Identities=32% Similarity=0.526 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHh----CCCCC--CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 402 NEEQTRSVEIILG----CKGAP--PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 402 N~eQ~~AV~~il~----~~~~~--~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.+.+.+...+. ..... .++|.||||||||+++...+.. +....+..++.+.
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~-~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL-YKDKTTARFVYIN 80 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH-HTTSCCCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH-HhhhcCeeEEEEe
Confidence 3455555554443 22223 6899999999999877554443 3211134555443
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.47 E-value=0.071 Score=57.65 Aligned_cols=41 Identities=20% Similarity=0.153 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhCCC-CCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKG-APPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~-~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.++..+.+...+.... ...++|.||||||||+++...+..+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555566666664322 2348999999999998765544433
No 175
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.31 E-value=0.035 Score=62.05 Aligned_cols=31 Identities=32% Similarity=0.663 Sum_probs=20.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+|++||||||||.+ +.+++.-+ +..++.+..
T Consensus 246 ILLyGPPGTGKTlL-AkAiA~e~----~~~fi~vs~ 276 (467)
T 4b4t_H 246 ILLYGPPGTGKTLC-ARAVANRT----DATFIRVIG 276 (467)
T ss_dssp EEECSCTTSSHHHH-HHHHHHHH----TCEEEEEEG
T ss_pred eEeeCCCCCcHHHH-HHHHHhcc----CCCeEEEEh
Confidence 89999999999975 44444333 345554443
No 176
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.30 E-value=0.084 Score=52.68 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=32.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
..++|.||||+|||+++...+..+.. .+.+++++..... .+.+.+++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSC-HHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccC-HHHHHHHHH
Confidence 35899999999999988776665554 2457887776443 344555543
No 177
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.26 E-value=0.045 Score=58.52 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 404 EQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 404 eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
+..+++...+.. ..++++.||||||||+++ .++...
T Consensus 34 ~~~~~l~~~l~~--~~~vll~G~pGtGKT~la-~~la~~ 69 (331)
T 2r44_A 34 YMINRLLIGICT--GGHILLEGVPGLAKTLSV-NTLAKT 69 (331)
T ss_dssp HHHHHHHHHHHH--TCCEEEESCCCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHc--CCeEEEECCCCCcHHHHH-HHHHHH
Confidence 344444444432 246999999999999764 444443
No 178
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.18 E-value=0.064 Score=58.24 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=34.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL 468 (806)
.++|.||||+|||+.+..++..+.. .+.++++++.-...-....+|+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchHHHHHc
Confidence 5899999999999988887776654 3567877776555444455555
No 179
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=93.16 E-value=0.24 Score=59.28 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++-|..++-.++.. . +.....|||||.+.+-.+. +....+..++|+|||...|....+-+..
T Consensus 79 ~Pt~VQ~~~ip~LlqG--~---IaeakTGeGKTLvf~Lp~~--L~aL~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEG--K---IAEMKTGEGKTLVATLAVA--LNALTGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHTT--S---EEECCSTHHHHHHHHHHHH--HHHTTCSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccCC--c---eeeccCCCchHHHHHHHHH--HHHHhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 5689999999887763 2 8999999999987655442 2223567899999999998887776654
No 180
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.10 E-value=0.068 Score=59.90 Aligned_cols=19 Identities=37% Similarity=0.777 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..++|+||||||||+++..
T Consensus 168 ~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999986443
No 181
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=93.06 E-value=0.023 Score=71.23 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCCeEECcccccccceeeEEEEEeccCCCcCccccccccccc---------------CCCCCceeecccccccceEEEEc
Q 038509 736 MPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGF---------------LSNPRRFNVAITRARSLLIIVGN 800 (806)
Q Consensus 736 ~~~v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgf---------------l~~~rrlnVAlTRAK~~LiIvGn 800 (806)
.+.|.+.|+|.++|.||++|++..+....-... ....+| ..+++.|||||||||..|+|...
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~---~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~ 732 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ---LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYI 732 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCC---CCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCC---CCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEe
Confidence 357999999999999999999988765421110 000111 12346699999999999999764
No 182
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.99 E-value=0.051 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=18.0
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.++|+|+||||||+.++..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999987665544
No 183
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.96 E-value=0.067 Score=58.00 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=33.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLER 467 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~er 467 (806)
..++|.||||||||+.+...+..+.. .+.++++++..........++
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~~a~~ 108 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPEYAKK 108 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHHHHHH
Confidence 35899999999999998888877765 456788777655433333333
No 184
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.89 E-value=0.083 Score=56.75 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=18.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..+++.|||||||||+ +.++...+
T Consensus 52 ~~~ll~Gp~G~GKTTL-a~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL-AHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHh
Confidence 4699999999999975 45555444
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.84 E-value=0.088 Score=57.78 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHh------------CCCCCCEEEEcCCCCChHHHHHHHHH
Q 038509 402 NEEQTRSVEIILG------------CKGAPPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 402 N~eQ~~AV~~il~------------~~~~~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.+.+++.+...+. ......++|+||||||||+++ .++.
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la-~aia 169 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA-KAVA 169 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH-HHHH
Confidence 4566666665541 111246999999999999854 4443
No 186
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=92.72 E-value=0.1 Score=58.57 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=17.4
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.+++.||||||||+++. ++.+.+
T Consensus 65 ~iLl~GppGtGKT~la~-ala~~l 87 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALAL-AIAQEL 87 (456)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH
T ss_pred eEEEECCCcCCHHHHHH-HHHHHh
Confidence 48999999999998654 444444
No 187
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.72 E-value=0.052 Score=57.17 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=18.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
++++.||||||||+++ .++...+.
T Consensus 49 ~~ll~G~~GtGKt~la-~~la~~~~ 72 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELA-KTLAATLF 72 (311)
T ss_dssp EEEEESCSSSSHHHHH-HHHHHHHH
T ss_pred EEEEECCCCcCHHHHH-HHHHHHHc
Confidence 6899999999999764 44555443
No 188
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.68 E-value=0.064 Score=50.94 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|||||||||++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986543
No 189
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.61 E-value=0.11 Score=55.49 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=37.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.|+||+|||+.+...+..+.. .+.++++++.- ...+.+..|+..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSD--NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEECC-CCHHHHHHHHHH
Confidence 46899999999999998887777664 34789998876 445666677664
No 190
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.44 E-value=0.11 Score=57.62 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEE
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILV 453 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv 453 (806)
.+...+..++..++. .....++|.||.|+||||++..++. ++. ....+|++
T Consensus 150 g~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg-~l~-~~~g~I~~ 200 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQ-ELN-SSERNILT 200 (418)
T ss_dssp CCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHH-HHC-CTTSCEEE
T ss_pred CCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHh-hcC-CCCCEEEE
Confidence 567888888888864 3345789999999999998766554 332 12345554
No 191
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.35 E-value=0.074 Score=58.03 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=17.9
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..++++.||||||||+++ .++.+.
T Consensus 72 ~~~ill~Gp~GtGKT~la-~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA-QTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHH-HHHHHH
T ss_pred CCCEEEECCCCCCHHHHH-HHHHHH
Confidence 357999999999999754 444443
No 192
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.30 E-value=0.097 Score=56.84 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNS 459 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~ 459 (806)
..++|.|+||+|||+.+...+..+.. .+.++++++...+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s 102 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHA 102 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 36899999999999998888877765 3567887776443
No 193
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.21 E-value=0.21 Score=48.55 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEE
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRIL 452 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rIL 452 (806)
++|.|||||||||.+. .+.+.+... +..++
T Consensus 3 I~l~G~~GsGKsT~~~-~L~~~l~~~-g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ-LLAQYLEKR-GKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHH-HHHHHHHHC-CC-EE
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHC-CCeEE
Confidence 6899999999998654 444444432 34443
No 194
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.19 E-value=0.12 Score=53.48 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=26.7
Q ss_pred CCCCHHHHHH-HHHHHhCC-C-CCCEEEEcCCCCChHHHHHH
Q 038509 399 NSLNEEQTRS-VEIILGCK-G-APPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 399 ~~LN~eQ~~A-V~~il~~~-~-~~~~lI~GPPGTGKT~tlv~ 437 (806)
++.|+.+-.. +...+... + ..-+++.||||||||.....
T Consensus 82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~a 123 (267)
T 1u0j_A 82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEA 123 (267)
T ss_dssp TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 3778888444 55566543 2 12389999999999986543
No 195
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=92.18 E-value=0.27 Score=57.89 Aligned_cols=66 Identities=24% Similarity=0.390 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHhC--CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 400 SLNEEQTRSVEIILGC--KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~--~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..|..|..|+..++.. .+....++.|.+|||||.+++..+.+. +..+||+|++...|..+.+-|..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~-----~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV-----NKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH-----CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh-----CCCEEEEECCHHHHHHHHHHHHH
Confidence 6788999998876532 222246789999999999998877654 34799999999999999998876
No 196
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.15 E-value=0.067 Score=55.88 Aligned_cols=21 Identities=38% Similarity=0.732 Sum_probs=16.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~ql 442 (806)
++|.||||||||+++ .++...
T Consensus 47 vlL~Gp~GtGKTtLa-kala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLA-KAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHH-HHHHHH
T ss_pred EEEECCCCCcHHHHH-HHHHHH
Confidence 899999999999754 444443
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.07 E-value=0.13 Score=58.48 Aligned_cols=21 Identities=48% Similarity=0.922 Sum_probs=16.3
Q ss_pred CCEEEEcCCCCChHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
..++|+||||||||+++ .++.
T Consensus 239 ~~vLL~GppGtGKT~lA-raia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA-RAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHHHH-HHHH
T ss_pred CcEEEECcCCCCHHHHH-HHHH
Confidence 45899999999999854 4443
No 198
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.06 E-value=0.068 Score=51.27 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=14.9
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||+...
T Consensus 5 ~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986544
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.06 E-value=0.12 Score=61.92 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+...+.+..++.......+++.||||||||++ ++.+++.+.
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~l-a~~la~~l~ 226 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAI-AEGLAQQII 226 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHH-HHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHH-HHHHHHHHh
Confidence 345555566666544445689999999999975 555555553
No 200
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.97 E-value=0.14 Score=54.41 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=25.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.++|.||+|+||||++...+..+.. .+.+|++.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEc
Confidence 4679999999999998887765543 355666654
No 201
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.90 E-value=0.11 Score=56.66 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=35.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL 468 (806)
..++|.||||+|||+.+...+..+.. .+.++++++.-.+......+++
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~--~g~~vlyi~~E~s~~~~~a~~~ 122 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQK--AGGTCAFIDAEHALDPVYARAL 122 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHHHHHT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHH--CCCeEEEEECCCChhHHHHHHc
Confidence 36899999999999998888887765 3568888887655444443333
No 202
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.72 E-value=0.079 Score=54.25 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=16.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~ql 442 (806)
++|.||||||||+++ .++...
T Consensus 52 ~ll~G~~G~GKTtl~-~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA-RAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 899999999999765 444443
No 203
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.71 E-value=0.099 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=16.1
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.++|.|||||||||.+.....
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999986544333
No 204
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.70 E-value=0.094 Score=50.73 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.++|.|+|||||||.+.. +.+.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~-L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK-VKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHH
Confidence 368999999999976544 444443
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.69 E-value=0.2 Score=52.03 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhC---------CCCeEEEEecchHHHHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTR---------EHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~---------~~~rILv~apSN~Aad~l~erL~ 469 (806)
..++|.||||+|||+.+...+..+ ... ...++++++.-... +.+..|+.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~ 88 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLH 88 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHH
Confidence 468999999999999877766644 322 13578877766544 55555554
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.57 E-value=0.25 Score=60.02 Aligned_cols=53 Identities=26% Similarity=0.298 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC-----CCCeEEEEec
Q 038509 404 EQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR-----EHSRILVCAA 456 (806)
Q Consensus 404 eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~-----~~~rILv~ap 456 (806)
+..+.+..++..+....+++.||||||||+++-..+..+.... .+.+++.+..
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 4444555556544445689999999999986554444443311 2456665543
No 207
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.56 E-value=0.12 Score=49.89 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=16.0
Q ss_pred CCEEEEcCCCCChHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~ 438 (806)
..++|.|+|||||||.+...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHH
Confidence 45899999999999865443
No 208
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.53 E-value=0.18 Score=48.66 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=26.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNS 459 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~ 459 (806)
+.+.|.|++||||||++...+..+-. .+.+|.++.....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~--~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR--EGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh--cCCeeeEEEeCCC
Confidence 34789999999999877665555443 3567777765443
No 209
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.49 E-value=0.096 Score=50.09 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=14.6
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999986543
No 210
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.36 E-value=0.11 Score=50.09 Aligned_cols=20 Identities=25% Similarity=0.230 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i 439 (806)
.++|.|||||||||+....+
T Consensus 7 ~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998654443
No 211
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.32 E-value=0.17 Score=53.35 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=26.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+.|.||+|+||||++...+..+.. ..+.+|++++.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~-~~G~~V~lv~~ 142 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISML-EKHKKIAFITT 142 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-TTCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-hcCCEEEEEec
Confidence 5789999999999998877765543 24567777653
No 212
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.26 E-value=0.19 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=17.7
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
..+++|.||||||||++ +.++..
T Consensus 25 ~~~vLi~Ge~GtGKt~l-Ar~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELV-ARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHH-HHHHHH
T ss_pred CCcEEEECCCCchHHHH-HHHHHH
Confidence 45799999999999975 444444
No 213
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=91.14 E-value=0.18 Score=60.36 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+++.+.+..++......+++|.||||||||+++-..+..+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 34555566666765444568999999999998654444433
No 214
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.13 E-value=0.11 Score=50.23 Aligned_cols=21 Identities=29% Similarity=0.333 Sum_probs=16.2
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.++|.|+|||||||.+.....
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999986544433
No 215
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.12 E-value=0.22 Score=53.87 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=27.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
..+.|.|+||+||||++...+..+.. .+.+|++++.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~--~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIE--RGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh--CCCceEEEec
Confidence 34789999999999988877766643 4677777654
No 216
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.08 E-value=0.1 Score=49.34 Aligned_cols=18 Identities=33% Similarity=0.421 Sum_probs=14.6
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|||||||||....
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 217
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=91.08 E-value=0.54 Score=43.77 Aligned_cols=89 Identities=17% Similarity=0.143 Sum_probs=59.3
Q ss_pred eEEe-eccCCCCCcceeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccccc
Q 038509 44 VIIS-VPFPFVQGKPQSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSI 122 (806)
Q Consensus 44 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (806)
|.|+ ...+|| .+..++...-+|+|.|+|.-|..+.-..- ... ......++.. +-
T Consensus 27 i~v~~~~ldFG-----~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~---~~~----------------~~~~~~wl~v-~P 81 (140)
T 3qbt_B 27 LELSRREFVFE-----NVKFRQLQKEKFQISNNGQVPCHFSFIPK---LND----------------SQYCKPWLRA-EP 81 (140)
T ss_dssp EEESCCEEEEE-----EECBTCCEEEEEEEEECSSSCEEEEEECC---TTC----------------SSSSCTTEEE-ES
T ss_pred eEeeeeeEEee-----eceeeeeeeeEEEEEcCCccceEEEEecC---CCc----------------hhhhhHhhhc-CC
Confidence 4444 367799 88889999999999999999998755311 000 0011112222 11
Q ss_pred cCeeeCCCCeEEEEEEEecCCC---------ceeeEEEEEEecC
Q 038509 123 EDRVLQPLRTLTIWLSCKPKEM---------GLHKSVVQFDIGD 157 (806)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~---------g~~~~~~~~~f~~ 157 (806)
...+|.||++..|.+++....- ..+.++++|+..+
T Consensus 82 ~~G~L~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~Ve~ 125 (140)
T 3qbt_B 82 FEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDR 125 (140)
T ss_dssp CEEEECTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEEETT
T ss_pred cccccCCCCeeEEEEEEEEccCcccccccchhhhheeEEEEeec
Confidence 3458999999999999985332 4567888888854
No 218
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.00 E-value=0.12 Score=51.20 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.1
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|||||||||....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986544
No 219
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.94 E-value=0.14 Score=49.37 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=14.8
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp SEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999986443
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.84 E-value=0.14 Score=50.62 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=25.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN 458 (806)
..++|.||||+|||+.+...+. . .+.++++++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEECCC
Confidence 4689999999999998776655 2 356777766543
No 221
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.81 E-value=0.14 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=17.5
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..+.|.||+|+||||++- .+...+
T Consensus 30 ~~i~l~G~~GsGKSTl~~-~L~~~~ 53 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAH-GVADET 53 (200)
T ss_dssp CEEEEECCTTSCHHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHHH-HHHHhh
Confidence 458899999999998654 444433
No 222
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.81 E-value=0.12 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=16.4
Q ss_pred CEEEEcCCCCChHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+.|.|||||||||++ ..+...
T Consensus 6 ~i~l~G~~GsGKSTl~-~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG-RQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHH
Confidence 5899999999999864 444433
No 223
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.79 E-value=0.15 Score=48.92 Aligned_cols=18 Identities=28% Similarity=0.312 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|||||||||+...
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999986443
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.76 E-value=0.15 Score=56.80 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=27.1
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.++|.|+||+||||++...+..+... +.+|++++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 57899999999999998888777653 46777665
No 225
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.74 E-value=0.14 Score=50.44 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=16.1
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.++|.|+|||||||.+.....
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999986544433
No 226
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.73 E-value=0.27 Score=55.16 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=37.5
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
..++|.|+||+|||+.+...+..+... .+.+|++.+.-.++ ..+..|+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCH-HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCH-HHHHHHHH
Confidence 468999999999999988888777653 35689998876554 56667764
No 227
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.72 E-value=0.14 Score=49.35 Aligned_cols=19 Identities=32% Similarity=0.656 Sum_probs=15.2
Q ss_pred CEEEEcCCCCChHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~ 438 (806)
.++|.|||||||||.....
T Consensus 6 ~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865443
No 228
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=90.70 E-value=0.11 Score=53.97 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=16.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~ql 442 (806)
++|.||||||||+++ .++...
T Consensus 76 vll~Gp~GtGKTtl~-~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA-RAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHH-HHHHHH
T ss_pred EEEECCCcChHHHHH-HHHHHH
Confidence 899999999999765 444444
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.60 E-value=0.28 Score=55.75 Aligned_cols=42 Identities=21% Similarity=0.229 Sum_probs=30.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec---chHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA---SNSAADHM 464 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap---SN~Aad~l 464 (806)
++|.|+||+||||++...+..+.+ .+.++++++. ...|.+.+
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~--~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQR--KGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEeccccchhHHHHH
Confidence 678899999999998887776654 3567777665 34455544
No 230
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.58 E-value=0.15 Score=50.19 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=16.3
Q ss_pred CCEEEEcCCCCChHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i 439 (806)
..++|.||||+||||+....+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999998654443
No 231
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.57 E-value=0.15 Score=50.94 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=15.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~ql 442 (806)
++|.||||+||||. +..+.+-
T Consensus 3 Iil~GpPGsGKgTq-a~~La~~ 23 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQ-AKRLAKE 23 (206)
T ss_dssp EEEECSTTSSHHHH-HHHHHHH
T ss_pred EEEECCCCCCHHHH-HHHHHHH
Confidence 58899999999975 4444443
No 232
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.57 E-value=0.23 Score=53.03 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=26.1
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.||+|+||||++...+..+.. .+.+|+++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 4788999999999998887766554 356777654
No 233
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.54 E-value=0.28 Score=51.36 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
..++|.||||+|||+.+...+..+.. ..+.+|++....... ..+..|+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~e~~~-~~~~~r~~ 84 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAMLEESV-EETAEDLI 84 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEESSSCH-HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeCcCCH-HHHHHHHH
Confidence 46899999999999987766655543 234578887765433 34555554
No 234
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.53 E-value=0.17 Score=50.91 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=26.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhC----CCCeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTR----EHSRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~----~~~rILv~apSN 458 (806)
..++|.||||+|||+++...+...+... .+..++.+....
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3689999999999998777665432211 145666666544
No 235
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.47 E-value=0.12 Score=51.38 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=14.0
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|||||||||....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986443
No 236
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.41 E-value=0.15 Score=49.25 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 5 ~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 237
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.38 E-value=0.34 Score=52.84 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEE
Q 038509 406 TRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILV 453 (806)
Q Consensus 406 ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv 453 (806)
.+||..........-.+|+||||||||+.+..++.++..++++..+.+
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~ 210 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRII 210 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEE
Confidence 356666553211224799999999999999877777766555544333
No 238
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.36 E-value=0.34 Score=52.86 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeE
Q 038509 404 EQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRI 451 (806)
Q Consensus 404 eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rI 451 (806)
-=.+||...+.-....-..|+||||+|||+.+...+.++...+++..+
T Consensus 160 tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~ 207 (422)
T 3ice_A 160 LTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 207 (422)
T ss_dssp HHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE
T ss_pred ccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE
Confidence 334566665542222348999999999999887777666665555443
No 239
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.36 E-value=0.17 Score=49.79 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.1
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+||+||||++..
T Consensus 20 ~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp CEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 589999999999986543
No 240
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.34 E-value=0.14 Score=58.15 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=17.0
Q ss_pred CCEEEEcCCCCChHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.++++.||||||||+. +.++..
T Consensus 42 ~~VLL~GpPGtGKT~L-AraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLI-ARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHH-HHHGGG
T ss_pred CeeEeecCchHHHHHH-HHHHHH
Confidence 4699999999999975 444443
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.29 E-value=0.22 Score=48.14 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=21.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC 454 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ 454 (806)
.++|.|+||+||||.+......+ .. .+.++.++
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l-~~-~~~~~~~~ 47 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLL-QK-EGYRVEVL 47 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-HH-TTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-Hh-cCCeEEEe
Confidence 57899999999998765544443 32 34455444
No 242
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.25 E-value=0.16 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=16.0
Q ss_pred CEEEEcCCCCChHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.++|.||||+||||. +..+.+-
T Consensus 31 iI~llGpPGsGKgTq-a~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQ-CEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHH
Confidence 467899999999975 4444443
No 243
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.25 E-value=0.18 Score=47.87 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.2
Q ss_pred CEEEEcCCCCChHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~ 438 (806)
.++|.|+|||||||+....
T Consensus 4 ~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CEEEESCTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4799999999999865443
No 244
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.23 E-value=0.16 Score=49.84 Aligned_cols=18 Identities=39% Similarity=0.798 Sum_probs=14.6
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 22 ~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=90.17 E-value=0.17 Score=49.54 Aligned_cols=19 Identities=53% Similarity=0.843 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
.|++|.||+|+||||.+-.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~ 20 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999986543
No 246
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.11 E-value=0.38 Score=51.74 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=38.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.|+||+|||+.+...+..+.. .+.+|++++.--+ .+.+..|+..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms-~~ql~~Rlls 95 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMS-AEQLALRALS 95 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSC-HHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCC-HHHHHHHHHH
Confidence 46899999999999998888877765 5688999888544 4566677754
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.10 E-value=0.14 Score=49.67 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCChHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv 436 (806)
..++|.||||+||||++-
T Consensus 10 ~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358899999999998643
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.08 E-value=0.18 Score=53.85 Aligned_cols=50 Identities=12% Similarity=0.102 Sum_probs=33.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhC----CCCeEEEEecchH-HHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTR----EHSRILVCAASNS-AADHMLERL 468 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~----~~~rILv~apSN~-Aad~l~erL 468 (806)
..++|.||||||||+.+...+....... .+.++++++..+. -.+.+.+++
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4689999999999998877766543210 1568888776654 134454444
No 249
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.08 E-value=0.22 Score=54.44 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=19.2
Q ss_pred CCEEE--EcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVI--YGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI--~GPPGTGKT~tlv~~i~qll 443 (806)
..++| .||||||||+++...+.++.
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 45788 99999999998766655543
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.01 E-value=0.16 Score=49.23 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCChHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~ 438 (806)
..++|.|+|||||||.....
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 35789999999999865443
No 251
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.95 E-value=0.18 Score=47.85 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=14.8
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||+...
T Consensus 9 ~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.94 E-value=0.2 Score=53.97 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=33.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhC----CCCeEEEEecchH-HHHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTR----EHSRILVCAASNS-AADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~----~~~rILv~apSN~-Aad~l~erL~ 469 (806)
..++|.||||||||+.+...+....... .+.++++++..+. ..+.+.+++.
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~ 178 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIAD 178 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999998877666533211 2567888777654 2445555443
No 253
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.90 E-value=0.15 Score=53.65 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=15.3
Q ss_pred CEEEEcCCCCChHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~ 438 (806)
.++|.|||||||||++...
T Consensus 35 livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp EEEEECCTTSCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999865443
No 254
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.89 E-value=0.18 Score=49.18 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=15.1
Q ss_pred EEEEcCCCCChHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i 439 (806)
++|.|+|||||||.+....
T Consensus 3 I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHH
Confidence 6899999999998654433
No 255
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.89 E-value=0.17 Score=48.80 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||+...
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 256
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.85 E-value=0.23 Score=52.91 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHH
Q 038509 403 EEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 403 ~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
+.+.+.+.. +.. +.++|.||+|+|||+.+.+.+.+
T Consensus 19 ~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 19 EKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp HHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHh
Confidence 445566666 653 46899999999999987766554
No 257
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.79 E-value=0.19 Score=50.21 Aligned_cols=19 Identities=37% Similarity=0.670 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~ 438 (806)
.++|.|+|||||||.....
T Consensus 6 ~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999864433
No 258
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.73 E-value=0.18 Score=50.34 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=15.7
Q ss_pred CCEEEEcCCCCChHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~ 438 (806)
..++|.|||||||||.....
T Consensus 6 ~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35899999999999865443
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.68 E-value=0.18 Score=51.81 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=15.6
Q ss_pred CEEEEcCCCCChHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i 439 (806)
.++|.|||||||||.....+
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 36899999999998654443
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.66 E-value=0.43 Score=50.31 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=26.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+.+.|++|+||||++...+..+.. .+.+|+++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEec
Confidence 4678899999999998887766554 3567776554
No 261
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.65 E-value=0.18 Score=49.05 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.8
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 14 ~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 262
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.62 E-value=0.19 Score=48.79 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||+...
T Consensus 12 ~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEM 29 (184)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999986543
No 263
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.61 E-value=0.36 Score=48.69 Aligned_cols=37 Identities=19% Similarity=0.148 Sum_probs=24.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH-HhCCCCeEEEEecc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY-STREHSRILVCAAS 457 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll-~~~~~~rILv~apS 457 (806)
..+.|.||+|+||||++...+...+ . ++..+++....
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~--~~~~~~~~~~~ 68 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEcc
Confidence 4689999999999998766554333 3 33455555443
No 264
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.59 E-value=0.3 Score=54.48 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+++.|++|+|||||++..+..+... .+.+|++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~ 137 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSA 137 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 35678999999999999888777653 2678777543
No 265
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.59 E-value=0.2 Score=48.42 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll 443 (806)
++|.|+|||||||.... +.+.+
T Consensus 3 I~l~G~~GsGKsT~~~~-L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK-LYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHH-HHHHH
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 68999999999986544 44433
No 266
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.57 E-value=0.19 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.045 Sum_probs=16.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.++|.|+|||||||.+.....+
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999865544433
No 267
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.55 E-value=0.19 Score=56.77 Aligned_cols=21 Identities=43% Similarity=0.768 Sum_probs=16.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.++|.||||||||+++ .++..
T Consensus 51 gvLL~GppGtGKT~La-raia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLA-RAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHH
Confidence 4899999999999764 44443
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=89.48 E-value=0.21 Score=47.69 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=14.9
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.||||+||||++..
T Consensus 10 ~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999986544
No 269
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.42 E-value=0.24 Score=55.23 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=17.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..+++.||||||||++ +.+++..+
T Consensus 51 ~~iLl~GppGtGKT~l-ar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEI-ARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHH-HHHHHHHT
T ss_pred ceEEEEcCCCCCHHHH-HHHHHHHc
Confidence 3589999999999975 44454443
No 270
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.42 E-value=0.2 Score=49.48 Aligned_cols=19 Identities=42% Similarity=0.903 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
.+++|.||||+||||.+-.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999985443
No 271
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.36 E-value=0.33 Score=50.01 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=21.7
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.++|.|+|||||||........+-. .+..+++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~--~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSK--NNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh--CCCEEEEEC
Confidence 4789999999999875554444322 234454333
No 272
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.35 E-value=0.2 Score=49.47 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=17.3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
..++|.|+|||||||.+......
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999875544443
No 273
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.35 E-value=0.22 Score=47.10 Aligned_cols=17 Identities=18% Similarity=0.055 Sum_probs=14.1
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|+|||||||....
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEESCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986443
No 274
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=89.22 E-value=0.22 Score=48.34 Aligned_cols=22 Identities=36% Similarity=0.613 Sum_probs=16.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+.|.||+|+||||++- .+..++
T Consensus 3 i~l~G~nGsGKTTLl~-~l~g~l 24 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVK-KIVERL 24 (178)
T ss_dssp EEEECCTTSSHHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHHH-HHHHHh
Confidence 6899999999998654 444444
No 275
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.15 E-value=0.21 Score=49.68 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.4
Q ss_pred EEEEcCCCCChHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~ 438 (806)
++|.|||||||||.+...
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999764433
No 276
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.11 E-value=0.21 Score=50.88 Aligned_cols=18 Identities=33% Similarity=0.783 Sum_probs=14.5
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|||||||||....
T Consensus 31 ~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999975443
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.05 E-value=0.22 Score=49.40 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..++|.||+|+||||++..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHH
Confidence 4688999999999987543
No 278
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.03 E-value=0.32 Score=54.39 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=38.2
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.|+||+|||+.+...+..+... +.++++++.-.+ .+.+..|+..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms-~~ql~~R~~~ 246 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG-KKENIKRLIV 246 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC-TTHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC-HHHHHHHHHH
Confidence 468999999999999999988887763 678999887544 4455666654
No 279
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.03 E-value=0.23 Score=49.90 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=14.6
Q ss_pred EEEEcCCCCChHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~ 438 (806)
++|.|||||||||.+...
T Consensus 3 I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999865443
No 280
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.02 E-value=0.22 Score=56.69 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=37.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.|+||+|||+.+...+..+... .+.++++++.-.++ ..+..|+..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s~-~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEESV-EETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSCH-HHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCCH-HHHHHHHHH
Confidence 468999999999999988888776542 26789998886654 466677653
No 281
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=89.00 E-value=0.2 Score=48.61 Aligned_cols=19 Identities=42% Similarity=0.719 Sum_probs=15.5
Q ss_pred CEEEEcCCCCChHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~ 438 (806)
.++|.||+|+||||++..+
T Consensus 4 ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 4689999999999876544
No 282
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.88 E-value=0.15 Score=48.95 Aligned_cols=18 Identities=44% Similarity=0.444 Sum_probs=10.7
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 7 ~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp EEEEECCC----CHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 283
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=88.82 E-value=0.31 Score=51.77 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHH
Q 038509 403 EEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 403 ~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
+.+.+.+...+... +.++|.||+|+|||+.+.+.+.
T Consensus 18 ~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 18 EEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp HHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHH
Confidence 44555566666432 5689999999999998766544
No 284
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.75 E-value=0.24 Score=50.04 Aligned_cols=20 Identities=35% Similarity=0.607 Sum_probs=15.5
Q ss_pred CEEEEcCCCCChHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i 439 (806)
.++|.|+|||||||......
T Consensus 18 ~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998654433
No 285
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=88.72 E-value=0.31 Score=56.01 Aligned_cols=24 Identities=38% Similarity=0.685 Sum_probs=18.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+.+++.||||||||++ +.++...+
T Consensus 109 ~~vll~Gp~GtGKTtl-ar~ia~~l 132 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSL-AKSIAKSL 132 (543)
T ss_dssp CEEEEESSSSSSHHHH-HHHHHHHH
T ss_pred CEEEEECCCCCCHHHH-HHHHHHhc
Confidence 4689999999999975 45555554
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.69 E-value=0.43 Score=46.17 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=24.3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+.+.|.|++|+||||++...+..+.. .+.++-++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~--~g~~v~~i~~ 42 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA--RGIRPGLIKH 42 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc--cCCceeEEee
Confidence 45789999999999877666655433 3445555443
No 287
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.69 E-value=0.22 Score=49.39 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
|.++.+.+...+.....+.++|.|++|+|||+++...+..+. ...++.++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~---~~~~~~~i~ 64 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG---NEVKIGAML 64 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT---TTSCEEEEE
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc---cCCeEEEEe
Confidence 334444445444322334578999999999988766665542 224555443
No 288
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.64 E-value=0.27 Score=48.87 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 402 NEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 402 N~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
|+.|.+.++..+.....+-++|.|.+|+|||+++...+...
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45566666655543333457889999999998877666554
No 289
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.47 E-value=0.19 Score=50.38 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|||||||||.+..
T Consensus 9 ~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 290
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=88.46 E-value=0.56 Score=52.37 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=37.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLIS 470 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~ 470 (806)
..++|.|+||+|||+.+...+..+... .+.++++++.-.++ +.+..|+..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~-~~l~~R~~~ 250 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPA-AQLTLRMMC 250 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCH-HHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCH-HHHHHHHHH
Confidence 468999999999999988888777652 35789998876554 466677653
No 291
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=88.41 E-value=0.24 Score=52.76 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=17.7
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.++|.||||||||+.+...+.+
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4699999999999977665544
No 292
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.38 E-value=0.25 Score=49.29 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=14.5
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 7 ~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 293
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.35 E-value=0.22 Score=48.88 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=14.5
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 17 ~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999986443
No 294
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=88.20 E-value=0.54 Score=52.17 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=34.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAAD 462 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad 462 (806)
..++|.|++|||||+++...+.+++. .+..++|+=|......
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchhH
Confidence 34899999999999998878888876 4578999999877654
No 295
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.13 E-value=0.39 Score=54.72 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEE
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRIL 452 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rIL 452 (806)
.+++.+.+.+...+.... .++|.||.||||||++..+ ..++ .+..+++
T Consensus 244 ~~~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL-~~~i--~~~~gii 291 (511)
T 2oap_1 244 TVPSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAI-MMFI--PPDAKVV 291 (511)
T ss_dssp SSCHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHH-GGGS--CTTCCEE
T ss_pred CCCHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHH-HhhC--CCCCCEE
Confidence 367777777776665432 4899999999999987543 3343 2444443
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.10 E-value=0.33 Score=47.62 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.++..++.+.. . .....+.|.||+|+||||++ .++...+.
T Consensus 11 ~~~~~~~~~~~---~-~~g~~i~l~G~sGsGKSTl~-~~La~~l~ 50 (200)
T 3uie_A 11 SVEKVDRQRLL---D-QKGCVIWVTGLSGSGKSTLA-CALNQMLY 50 (200)
T ss_dssp CCCHHHHHHHH---T-SCCEEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred ccCHHHHHHhc---C-CCCeEEEEECCCCCCHHHHH-HHHHHHHH
Confidence 45666654432 1 22235789999999999765 44554544
No 297
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=88.01 E-value=4.7 Score=36.28 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=54.5
Q ss_pred ecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCC----CCCCCcccccccccccCeeeCCCCeEEEEE
Q 038509 62 VGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGK----PDPQKDQGFLEGFSIEDRVLQPLRTLTIWL 137 (806)
Q Consensus 62 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (806)
.|++-.++++|.|.++++++|.. +..-.|.|.+.+.-.+. ++.. .|.. -+..+.|.|||++.+..
T Consensus 16 ~g~~v~~~ltv~N~s~~~v~l~f------~Sgq~~Df~v~d~~G~~VwrwS~~~---~FtQ--a~~~~tl~pGE~~~f~~ 84 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSERAIEFQF------STGQKFELVVYDSEHKERYRYSKEK---MFTQ--AFQNLTLESGETYDFSD 84 (120)
T ss_dssp CSSCEEEEEEEEECSSSCEEEEE------SSSCCEEEEEECTTCCEEEETTTTC---CCCC--CCEEEEECTTCEEEEEE
T ss_pred CCCeEEEEEEEEcCCCCcEEEEe------CCCCEEEEEEECCCCCEEEEccccc---hhhh--hhceEEECCCCEEEEEE
Confidence 57788999999999999999986 33344666666542110 1111 1222 34567999999999999
Q ss_pred EEec-CCCceeeEEEEE
Q 038509 138 SCKP-KEMGLHKSVVQF 153 (806)
Q Consensus 138 ~~~~-~~~g~~~~~~~~ 153 (806)
+-.. -..|.|.....|
T Consensus 85 ~w~~~~~pG~Ytl~a~l 101 (120)
T 3isy_A 85 VWKEVPEPGTYEVKVTF 101 (120)
T ss_dssp EESSCCCSEEEEEEEEE
T ss_pred EeCCCCCCccEEEEEEE
Confidence 9984 346877665544
No 298
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.00 E-value=0.3 Score=51.90 Aligned_cols=51 Identities=10% Similarity=0.173 Sum_probs=33.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHh----------CCC----CeEEEEecchHH-HHHHHHHHh
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYST----------REH----SRILVCAASNSA-ADHMLERLI 469 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~----------~~~----~rILv~apSN~A-ad~l~erL~ 469 (806)
..++|.||||||||+.+...+...... ..+ .++++++..+.. .+.+.+++.
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999887776653211 112 688888776642 455555543
No 299
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.00 E-value=0.46 Score=51.97 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=34.2
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAAD 462 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad 462 (806)
.+.++|.||+|+|||+++...+.++.. .+.+|+++-+.+....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~~~~ 77 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPEREYKE 77 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCCSHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcCHHH
Confidence 356899999999999998888877764 4678999888776543
No 300
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=87.93 E-value=0.22 Score=48.53 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=26.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHhcc
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLISN 471 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~~~ 471 (806)
++|.|++|||||+.... +... +.+++.++.....-+++.+|+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~----la~~--~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA----LIGD--APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHH----HHCS--CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHH----HHhc--CCCeEEEecCCCCCHHHHHHHHHH
Confidence 68999999999975433 2222 456777776655567888887653
No 301
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.75 E-value=0.4 Score=48.92 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=26.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
..+++.|.+|+||||++...+..+. .+.+++++.
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd 48 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVN 48 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEe
Confidence 3478999999999999888776654 457887765
No 302
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.70 E-value=0.21 Score=48.82 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||.+..
T Consensus 6 ~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 578999999999986544
No 303
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.49 E-value=0.43 Score=47.20 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..++|.|+||+||||.+.. +...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~-l~~~l 49 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVE-LEHQL 49 (211)
T ss_dssp EEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHHH-HHHHh
Confidence 3578999999999986544 44444
No 304
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=87.40 E-value=0.21 Score=51.24 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=14.6
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|||||||||+...
T Consensus 34 ~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEESCGGGTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986443
No 305
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=87.33 E-value=0.32 Score=49.41 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..+.|.||||+||||.+-.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3588999999999986544
No 306
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.29 E-value=0.54 Score=50.35 Aligned_cols=34 Identities=21% Similarity=0.269 Sum_probs=23.7
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.||.|+||||++...+.. +... +.+|++.+
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~-l~~~-~g~V~l~g 164 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANW-LKNH-GFSVVIAA 164 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHHT-TCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHhc-CCEEEEEe
Confidence 5789999999999987766554 4433 44665543
No 307
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.24 E-value=0.9 Score=45.33 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=24.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEE-EecchHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILV-CAASNSAA 461 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv-~apSN~Aa 461 (806)
.++|.|++|+||||.+... .+.+.. .+..+.. --|.....
T Consensus 8 ~i~~eG~~gsGKsT~~~~l-~~~l~~-~~~~v~~~~~p~~~~~ 48 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYL-AERLRE-RGIEVQLTREPGGTPL 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHHT-TTCCEEEEESSCSSHH
T ss_pred EEEEEcCCCCCHHHHHHHH-HHHHHH-cCCCcccccCCCCCHH
Confidence 5789999999999876554 444443 2344433 34444433
No 308
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.23 E-value=0.3 Score=47.20 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
.+++|.||+|+||||++-.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3689999999999986544
No 309
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=87.22 E-value=0.34 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.+.|.||+||||||++. .+..
T Consensus 7 ~i~i~G~~GsGKSTl~~-~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCK-AMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 47899999999998644 4443
No 310
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.20 E-value=0.2 Score=60.06 Aligned_cols=30 Identities=33% Similarity=0.672 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
+|++||||||||+. +.+++.- -+..++.+.
T Consensus 241 ILL~GPPGTGKT~L-AraiA~e----lg~~~~~v~ 270 (806)
T 3cf2_A 241 ILLYGPPGTGKTLI-ARAVANE----TGAFFFLIN 270 (806)
T ss_dssp EEEECCTTSCHHHH-HHHHHTT----TTCEEEEEE
T ss_pred EEEECCCCCCHHHH-HHHHHHH----hCCeEEEEE
Confidence 89999999999975 4444322 245555544
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.19 E-value=0.3 Score=47.76 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=15.3
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..+.|.||+|+||||++-.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHH
Confidence 3578999999999986543
No 312
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=86.99 E-value=0.31 Score=47.87 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.7
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
+.|.||+||||||++.
T Consensus 5 i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEECSTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6799999999998643
No 313
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=86.96 E-value=0.13 Score=64.76 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=42.9
Q ss_pred CCCeEECcccccccceeeEEEEEeccCCCcCcccccccccccC------------------------CCCCceeeccccc
Q 038509 736 MPDVKVGTVEQFQGQEREVIIVSTVRSTVKHNEFDRTYCLGFL------------------------SNPRRFNVAITRA 791 (806)
Q Consensus 736 ~~~v~V~TVd~fQG~E~dvVIiS~vrs~~~~~~~d~~~~lgfl------------------------~~~rrlnVAlTRA 791 (806)
...|.|+|+|.++|.|+++|++..+....-+.. ...-+|+ .+++.+|||+|||
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~---~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA 661 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPAR---PDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSP 661 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTC---CCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCC---CCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcc
Confidence 346999999999999999999988765421110 0011221 2235699999999
Q ss_pred ccceEEEE
Q 038509 792 RSLLIIVG 799 (806)
Q Consensus 792 K~~LiIvG 799 (806)
+..|++--
T Consensus 662 ~~~L~lsy 669 (1166)
T 3u4q_B 662 SDRLYVSY 669 (1166)
T ss_dssp SSEEEEEE
T ss_pred cCeEEEEE
Confidence 99999864
No 314
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.94 E-value=0.26 Score=47.25 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.4
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.+.|.||+|+||||++-.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987653
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.90 E-value=0.32 Score=47.57 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCChHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv 436 (806)
..+.|.||+|+||||++-
T Consensus 7 ~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CEEEEECSTTSCHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 357899999999998643
No 316
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.75 E-value=0.37 Score=46.69 Aligned_cols=23 Identities=48% Similarity=0.839 Sum_probs=17.1
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
++.|.||.|+||||++- ++..++
T Consensus 3 ii~l~GpsGaGKsTl~~-~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLK-KLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHH-HHHHHC
T ss_pred EEEEECCCCCCHHHHHH-HHHhhC
Confidence 58899999999998654 444443
No 317
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=86.70 E-value=0.79 Score=49.59 Aligned_cols=43 Identities=21% Similarity=0.320 Sum_probs=26.6
Q ss_pred HHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEE
Q 038509 408 SVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRIL 452 (806)
Q Consensus 408 AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rIL 452 (806)
.+..++... .+.++|.||.|+||||++..++. ++....+.+|+
T Consensus 114 ~l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~g-~~~~~~~~~i~ 156 (356)
T 3jvv_A 114 VFKRVSDVP-RGLVLVTGPTGSGKSTTLAAMLD-YLNNTKYHHIL 156 (356)
T ss_dssp HHHHHHHCS-SEEEEEECSTTSCHHHHHHHHHH-HHHHHCCCEEE
T ss_pred HHHHHHhCC-CCEEEEECCCCCCHHHHHHHHHh-cccCCCCcEEE
Confidence 344444322 34789999999999998765554 44322234554
No 318
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=86.67 E-value=0.6 Score=49.33 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=24.5
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.||.|+||||++...+.. +.. .+.+|++.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~-l~~-~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR-LKN-EGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HHH-TTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHH-HHH-cCCeEEEEe
Confidence 4789999999999987765554 443 346777655
No 319
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=86.65 E-value=0.29 Score=55.48 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=16.5
Q ss_pred EEEEcCCCCChHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~ql 442 (806)
++|.||||||||+++ .++...
T Consensus 67 vLL~GppGtGKTtLa-raIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLA-RAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHH
Confidence 899999999999754 455544
No 320
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.58 E-value=0.34 Score=56.28 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=13.9
Q ss_pred CEEEEcCCCCChHHH
Q 038509 420 PYVIYGPPGTGKTMT 434 (806)
Q Consensus 420 ~~lI~GPPGTGKT~t 434 (806)
++++.||||||||+.
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 799999999999974
No 321
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=86.22 E-value=0.78 Score=45.02 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=21.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC 454 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ 454 (806)
.+.|.||+|+||||++. .+..++... +..|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~-~l~~~~~~~-~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLAN-QLSQTLREQ-GISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHH-HHHHHHHHT-TCCEEEE
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHhhc-CCeEEEe
Confidence 47899999999998654 444444322 3445443
No 322
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=85.79 E-value=2.7 Score=49.45 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=33.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 422 VIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 422 lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
+..=.-|+|||.+.+-. .++....+..+.|+|+|.-.|..-.+-+.
T Consensus 92 iaEM~TGEGKTLva~lp--~~lnAL~G~~vhVvT~ndyLA~rdae~m~ 137 (822)
T 3jux_A 92 VAEMKTGEGKTLAATMP--IYLNALIGKGVHLVTVNDYLARRDALWMG 137 (822)
T ss_dssp EEECCTTSCHHHHTHHH--HHHHHTTSSCEEEEESSHHHHHHHHHHHH
T ss_pred hhhccCCCCccHHHHHH--HHHHHhcCCceEEEeccHHHHHhHHHHHH
Confidence 77778999999865433 33444578899999999988876665543
No 323
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.78 E-value=0.46 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+.|.|++||||||++.. +...+.
T Consensus 7 ~i~l~G~~GsGKST~~~~-L~~~l~ 30 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMA-LEEYLV 30 (179)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHh
Confidence 478999999999986544 444443
No 324
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=85.71 E-value=0.87 Score=49.10 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 411 IILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 411 ~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
.++.......+++.|-.|+||||+.+..+..+.....+.+||++..-
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred HHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 34444444567899999999999988887766521357888887653
No 325
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.55 E-value=0.28 Score=58.73 Aligned_cols=19 Identities=53% Similarity=1.011 Sum_probs=14.9
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~ 440 (806)
+|++||||||||.+ +.+++
T Consensus 514 vLl~GPPGtGKT~l-AkaiA 532 (806)
T 3cf2_A 514 VLFYGPPGCGKTLL-AKAIA 532 (806)
T ss_dssp CEEESSTTSSHHHH-HHHHH
T ss_pred EEEecCCCCCchHH-HHHHH
Confidence 79999999999964 44443
No 326
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=85.54 E-value=0.48 Score=46.81 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=18.4
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+.|.||+|+||||++ ..+..++.
T Consensus 24 ~v~I~G~sGsGKSTl~-~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLS-NPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5789999999999764 55555654
No 327
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.38 E-value=0.49 Score=47.81 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=20.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEE
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILV 453 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv 453 (806)
.++|.||||+||||.+ .++.+.+.. +..++.
T Consensus 28 ~i~i~G~~GsGKsT~~-~~l~~~l~~--~~~~~~ 58 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVI-NEVYHRLVK--DYDVIM 58 (229)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHHTT--TSCEEE
T ss_pred EEEEEcCCCCCHHHHH-HHHHHHHhc--CCCcee
Confidence 5789999999999865 445555542 345543
No 328
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.32 E-value=1.3 Score=44.97 Aligned_cols=41 Identities=15% Similarity=0.130 Sum_probs=24.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCe--EEEEecchHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSR--ILVCAASNSAA 461 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~r--ILv~apSN~Aa 461 (806)
..++|.|++|+||||.+......+ ... +.. ++.-.|+....
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l-~~~-~~~~~~~~rep~~t~~ 70 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL-QQN-GIDHITRTREPGGTLL 70 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH-HHT-TCCCEEEEESSCSSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-Hhc-CCCeeeeecCCCCCHH
Confidence 357899999999998765554444 332 333 33344544433
No 329
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=85.30 E-value=0.66 Score=49.08 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=24.6
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+.|.||.|+||||++...+. ++.. .+.+|++.+-
T Consensus 104 vi~lvG~nGsGKTTll~~Lag-ll~~-~~g~V~l~g~ 138 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGR-YYQN-LGKKVMFCAG 138 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHT-TTCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHh-cCCEEEEEee
Confidence 578999999999998765544 4543 3557776553
No 330
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.24 E-value=0.79 Score=53.32 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 404 EQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 404 eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.-.+.+...+... .+++|.||||||||++ +.++..++
T Consensus 48 ~~l~~l~~~i~~g--~~vll~Gp~GtGKTtl-ar~ia~~l 84 (604)
T 3k1j_A 48 HAVEVIKTAANQK--RHVLLIGEPGTGKSML-GQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHHTT--CCEEEECCTTSSHHHH-HHHHHHTS
T ss_pred hhHhhccccccCC--CEEEEEeCCCCCHHHH-HHHHhccC
Confidence 3344455555433 4699999999999975 45555554
No 331
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=85.23 E-value=0.53 Score=46.26 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=18.0
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.++.|.||.|+||||++-. +..++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~-L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKK-LFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHHH-HHhhC
Confidence 4689999999999986544 44443
No 332
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=85.20 E-value=0.88 Score=45.22 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 400 SLNEEQTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 400 ~LN~eQ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..+..|+.+++.+-. ...+.|.||.|+||||.+ ..+.-+
T Consensus 7 pk~~g~~~~l~~i~~---Ge~~~liG~nGsGKSTLl-~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAIDT---NTIVFGLGPAGSGKTYLA-MAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHHHH---CSEEEEECCTTSSTTHHH-HHHHHH
T ss_pred cCCHhHHHHHHhccC---CCEEEEECCCCCCHHHHH-HHHhcC
Confidence 346778888888743 235789999999999865 445444
No 333
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.09 E-value=1.1 Score=47.08 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=26.1
Q ss_pred CEEEEcC-CCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGP-PGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GP-PGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.|+ ||.|||++.+..+..+.. .+.+||++-
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~--~G~rVLLID 140 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQ--SDQKVLFID 140 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHh--CCCcEEEEE
Confidence 4567665 899999999888877765 467888764
No 334
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.07 E-value=1.4 Score=43.99 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=27.4
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeE-EEEecchHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRI-LVCAASNSAADHMLERL 468 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rI-Lv~apSN~Aad~l~erL 468 (806)
.+++.|++|+||||.+..... .+....-..+ +.--|+.....+..+.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~-~l~~~~~~~v~~~rep~~t~~g~~ir~~ 53 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVE-TLEQLGIRDMVFTREPGGTQLAEKLRSL 53 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHH-HHHHTTCCCEEEEESSCSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHcCCCcceeeeCCCCCHHHHHHHHH
Confidence 578999999999987655544 4443322244 33344544444433333
No 335
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.04 E-value=0.77 Score=50.11 Aligned_cols=33 Identities=15% Similarity=0.256 Sum_probs=20.9
Q ss_pred HHHHHHH-hCCCCCCEEEEcCCCCChHHHHHHHH
Q 038509 407 RSVEIIL-GCKGAPPYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 407 ~AV~~il-~~~~~~~~lI~GPPGTGKT~tlv~~i 439 (806)
.++..+- +-.....++|.|||||||||.+..++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~ 190 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALL 190 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444442 22333468999999999998654433
No 336
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=84.98 E-value=0.24 Score=48.80 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=16.9
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
++|.|++||||||.+ ..+...+.
T Consensus 3 I~i~G~~GsGKsTl~-~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV-EKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHH-HHHHHHHH
T ss_pred EEEEcCCCCCHHHHH-HHHHHHHH
Confidence 689999999999765 44444443
No 337
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.91 E-value=0.61 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=17.5
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
++++.||||||||+++ .++.+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA-~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA-RALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4999999999999864 4444444
No 338
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=84.88 E-value=0.81 Score=49.56 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=24.5
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.||.|+||||++..++.. +.. .+.+|++.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~-l~~-~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR-LKN-EGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH-HHH-TTCCEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHhh-ccc-cCCEEEEec
Confidence 4789999999999987765554 443 346777655
No 339
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=84.71 E-value=0.73 Score=49.43 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=31.8
Q ss_pred HHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 412 ILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 412 il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
.+.......+++.|-.|+||||+.+..+..+.. .+.+||++..-
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~--~g~~vllid~D 53 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK--VRRSVLLLSTD 53 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTT--SSSCEEEEECC
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence 344333446788999999999998887776654 56788877653
No 340
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.69 E-value=0.44 Score=47.34 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=17.5
Q ss_pred CCEEEEcCCCCChHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
..+.|.||+|+||||++...+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999987665444
No 341
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.67 E-value=0.49 Score=46.79 Aligned_cols=21 Identities=33% Similarity=0.484 Sum_probs=17.0
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.++|.||+|+|||+++.+.+.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999988665443
No 342
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.65 E-value=0.51 Score=61.60 Aligned_cols=50 Identities=26% Similarity=0.330 Sum_probs=36.0
Q ss_pred HHHHHh-C--CCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHH
Q 038509 409 VEIILG-C--KGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSA 460 (806)
Q Consensus 409 V~~il~-~--~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~A 460 (806)
+...++ . .....++|.||||||||+.+...+....+ .+.+++++++.+..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEEccccc
Confidence 555565 1 12235899999999999988887776654 46788888877653
No 343
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.62 E-value=1.1 Score=45.24 Aligned_cols=24 Identities=25% Similarity=0.130 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..++|.||+|+||||.+......+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999998765544444
No 344
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=84.56 E-value=1 Score=46.53 Aligned_cols=47 Identities=6% Similarity=-0.052 Sum_probs=33.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHHh
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERLI 469 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL~ 469 (806)
.++|.|+||||||+.....+..-++ .+.+.+++++...... +.++..
T Consensus 23 ~~li~g~p~~~~~~l~~qfl~~g~~--~Ge~~~~~~~~e~~~~-l~~~~~ 69 (260)
T 3bs4_A 23 ILIHEEDASSRGKDILFYILSRKLK--SDNLVGMFSISYPLQL-IIRILS 69 (260)
T ss_dssp EEEEECSGGGCHHHHHHHHHHHHHH--TTCEEEEEECSSCHHH-HHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHH--CCCcEEEEEEeCCHHH-HHHHHH
Confidence 5799999999999665665555554 5789999999666554 444443
No 345
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=84.55 E-value=0.48 Score=46.40 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=13.6
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
+.|.||+||||||++-
T Consensus 4 i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6899999999998643
No 346
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.43 E-value=0.94 Score=47.63 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=24.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.|++|+||||++...+..+.. .+.+|++..
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEec
Confidence 3567799999999998877765543 356777654
No 347
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=84.42 E-value=1.1 Score=46.46 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=25.9
Q ss_pred CEEEEcC-CCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGP-PGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GP-PGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.++ ||.|||++.+..+..+.. .+.|||++-
T Consensus 84 vI~vts~kgG~GKTt~a~nLA~~lA~--~G~rVLLID 118 (271)
T 3bfv_A 84 SIVITSEAPGAGKSTIAANLAVAYAQ--AGYKTLIVD 118 (271)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHh--CCCeEEEEe
Confidence 3566665 899999999988887765 467888753
No 348
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.29 E-value=0.84 Score=49.21 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=25.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+.+.|.|+||+||||++-..+..+.. .+.+|.|++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~--~~~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTE--RGHKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhh--cCCeEEEEee
Confidence 45789999999999877665554433 3467777664
No 349
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=84.15 E-value=3.2 Score=44.95 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=63.1
Q ss_pred CCeEEee-ccCCCCCcceeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccc
Q 038509 42 GPVIISV-PFPFVQGKPQSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGF 120 (806)
Q Consensus 42 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (806)
-+|.|+. ..+|| .+..++...-+|+|.|+|.-|..+.=..- ..+ ....+.|+...
T Consensus 28 P~v~v~~~~idFg-----~v~~~~~~~~~l~i~N~g~~pa~f~f~~~---~~~----------------~~~~~~wl~v~ 83 (366)
T 3qis_A 28 PSLELSRREFVFE-----NVKFRQLQKEKFQISNNGQVPCHFSFIPK---LND----------------SQYCKPWLRAE 83 (366)
T ss_dssp CCEEESCSEEEEE-----EECBTCCEEEEEEEEECSSSCEEEEEECC---TTC----------------SSSSCTTEEEE
T ss_pred CeEEEecCeEEee-----eeeeCCeEEEEEEEEecCCceEEEEEEeC---CCC----------------CCCCCCcEEEe
Confidence 3556654 56688 78889999999999999999997654211 111 11122333332
Q ss_pred cccCeeeCCCCeEEEEEEEecCC---------CceeeEEEEEEecC
Q 038509 121 SIEDRVLQPLRTLTIWLSCKPKE---------MGLHKSVVQFDIGD 157 (806)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~---------~g~~~~~~~~~f~~ 157 (806)
-....|.||++..|.+++..+. -....++++++..+
T Consensus 84 -p~~g~l~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL~ve~ 128 (366)
T 3qis_A 84 -PFEGYLEPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLHLDR 128 (366)
T ss_dssp -SCEEEECTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEEEETT
T ss_pred -CCccEECCCCEEEEEEEEEECHHHHHHHhcCccccceEEEEEEeC
Confidence 1245899999999999998777 44577888898865
No 350
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.10 E-value=0.61 Score=45.55 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.+.|.|++||||||+.. .+..
T Consensus 4 ~i~i~G~~GsGKst~~~-~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR-RVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 46899999999998644 4433
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.65 E-value=0.54 Score=48.01 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=15.7
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.+.|.|||||||||+. ..+.+
T Consensus 24 iI~I~G~~GSGKST~a-~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVC-AKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHH-HHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHH
Confidence 3679999999999864 44443
No 352
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=83.59 E-value=1.2 Score=46.36 Aligned_cols=58 Identities=16% Similarity=0.113 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCCCEEEE---cCCCCChHHHHHHHHHHHHHhCCCCeEEE--EecchHHHHHH
Q 038509 404 EQTRSVEIILGCKGAPPYVIY---GPPGTGKTMTLVEAILQVYSTREHSRILV--CAASNSAADHM 464 (806)
Q Consensus 404 eQ~~AV~~il~~~~~~~~lI~---GPPGTGKT~tlv~~i~qll~~~~~~rILv--~apSN~Aad~l 464 (806)
+|...+.+.+.... ..+.|. +-.|+||||+.+..+..+.+ .+.+||+ +-+...+...+
T Consensus 21 ~~~~~~~r~~~~~~-~~i~v~~~s~KGGvGKTT~a~nLA~~la~--~G~rVlliD~D~q~~~~~~l 83 (298)
T 2oze_A 21 KILEELRRILSNKN-EAIVILNNYFKGGVGKSKLSTMFAYLTDK--LNLKVLMIDKDLQATLTKDL 83 (298)
T ss_dssp HHHHHHHHHHHHHC-SCEEEEECCSSSSSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCHHHHHH
T ss_pred HHHHHHHHHhcCCC-cEEEEEeccCCCCchHHHHHHHHHHHHHh--CCCeEEEEeCCCCCCHHHHH
Confidence 34444455554322 234455 48999999999988876664 4678887 34444444333
No 353
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=83.42 E-value=0.6 Score=48.81 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=14.6
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|+|||||||....
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999986443
No 354
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.41 E-value=0.88 Score=50.44 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=24.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.|++|+||||++...+..+.. .+.+|+++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEee
Confidence 3667899999999998877765543 356776654
No 355
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=83.30 E-value=1 Score=48.45 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=29.1
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
.+++.|-+|+||||+.+..+..+.. .+.|||++.--
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~--~G~rVLlvD~D 63 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAE--KGLKVVIVSTD 63 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHH--SSCCEEEEECC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 4678899999999999888877765 46888887743
No 356
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=83.30 E-value=0.7 Score=45.21 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=18.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+.|.||+|+||||++..++ .++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~-g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS-EVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH-HHHH
T ss_pred EEEEECCCCChHHHHHHHHH-hhcc
Confidence 47899999999998765544 4444
No 357
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.24 E-value=1 Score=50.85 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=24.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC 454 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ 454 (806)
.+.|.||.|+||||++..++. ++.. .+.+|++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg-ll~~-~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR-QFEQ-QGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHH-TTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHH-Hhhh-cCCeEEEe
Confidence 478999999999998766554 4443 35677775
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=83.20 E-value=0.56 Score=46.10 Aligned_cols=17 Identities=29% Similarity=0.194 Sum_probs=13.9
Q ss_pred CEEEEcCCCCChHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv 436 (806)
.+.|.||||+||||++.
T Consensus 23 ~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAK 39 (207)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46799999999998543
No 359
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.10 E-value=0.36 Score=58.25 Aligned_cols=23 Identities=43% Similarity=0.843 Sum_probs=17.2
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..++|.||||||||++ +.++...
T Consensus 239 ~~vLL~Gp~GtGKTtL-arala~~ 261 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLI-ARAVANE 261 (806)
T ss_dssp CEEEECSCTTSSHHHH-HHHHHHT
T ss_pred CeEEEECcCCCCHHHH-HHHHHHH
Confidence 3589999999999964 5555443
No 360
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.10 E-value=1.1 Score=48.00 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=29.5
Q ss_pred HHHHHHH-hCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 407 RSVEIIL-GCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 407 ~AV~~il-~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.++..+- .......+.|.||||+||||++-..+ .++.. .+.+|.+.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~-g~~~~-~~g~v~i~~~ 91 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALG-SLLTA-AGHKVAVLAV 91 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHH-HHHHH-TTCCEEEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHH-Hhhhh-CCCEEEEEEE
Confidence 4455442 22333457899999999998765544 44432 3567777664
No 361
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=83.04 E-value=0.7 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=16.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+.|.||||+||||+. ..+.+.
T Consensus 11 ~i~i~G~~GsGKsTla-~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVS-RGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHH
Confidence 4789999999999754 444443
No 362
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.01 E-value=0.56 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=17.4
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
++++.||||||||+++ .++.+.+
T Consensus 490 ~~ll~G~~GtGKT~la-~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT-VQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCcHHHHH-HHHHHHh
Confidence 5899999999999764 4444444
No 363
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.89 E-value=0.7 Score=45.61 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
.+++|.||+|+||||++..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHH
Confidence 4689999999999986544
No 364
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.77 E-value=0.72 Score=47.58 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=23.8
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC 454 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ 454 (806)
...++|.||.|+||||++...+ .++......+|++.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~-g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITI 60 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHH-HHHHHHCCCEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHH-HhCCCCCCCEEEEc
Confidence 3468999999999998866544 44442213466553
No 365
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=82.75 E-value=3.2 Score=43.97 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=46.1
Q ss_pred cceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccc--cccccCe-eeCCCCeEEEEEEE
Q 038509 63 GETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLE--GFSIEDR-VLQPLRTLTIWLSC 139 (806)
Q Consensus 63 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~ 139 (806)
|.+-.+++.|.|+|++++.|-...-++ ++-++|.....+.+.-...+. ..+++|. -|.|||+-++.+++
T Consensus 263 gR~l~~~~~VtN~g~~pvrlgeF~tA~--------vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v~a 334 (382)
T 1yew_A 263 GRAMRMKLTITNHGNSPIRLGEFYTAS--------VRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDVTA 334 (382)
T ss_dssp CSEEEEEEEEEECSSSCEEEEEEECSS--------CEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEEEE
T ss_pred CcEEEEEEEEEcCCCCceEeeeEEecc--------EEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEEEe
Confidence 888899999999999999998854432 233333221111122222222 2455555 49999999999999
Q ss_pred ec
Q 038509 140 KP 141 (806)
Q Consensus 140 ~~ 141 (806)
.-
T Consensus 335 ~d 336 (382)
T 1yew_A 335 SD 336 (382)
T ss_dssp EC
T ss_pred eh
Confidence 84
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=82.59 E-value=0.68 Score=50.42 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC 454 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ 454 (806)
..++|.||.|+||||++..++. ++......+|++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~-~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID-YINQTKSYHIITI 171 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH-HHHHHSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHh-hcCcCCCcEEEEe
Confidence 4689999999999998766554 4432224566553
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=82.46 E-value=0.78 Score=44.99 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..+.|.|++||||||+...
T Consensus 13 ~iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3567999999999986443
No 368
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=82.39 E-value=1.1 Score=47.63 Aligned_cols=36 Identities=25% Similarity=0.234 Sum_probs=29.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
.++..|-+|+||||+.+..+..+.+ .+.|||++..-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~--~G~rVLlvD~D 51 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMAR--SGKKTLVISTD 51 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHH--CCCcEEEEeCC
Confidence 4678899999999999888887765 47888887753
No 369
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=82.02 E-value=0.64 Score=49.57 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=15.9
Q ss_pred CEEEEcCCCCChHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i 439 (806)
.++|.||+|||||+.....+
T Consensus 7 ~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998655443
No 370
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=81.91 E-value=1.3 Score=47.34 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=29.0
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
...+++.|-+|.||||+.+..+..+.+ .+.|+|++.-
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~--~G~rVllvD~ 55 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSK--VRSSVLLIST 55 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHT--SSSCEEEEEC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHH--CCCeEEEEEC
Confidence 345778899999999998888877764 4788888654
No 371
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=81.86 E-value=0.79 Score=45.04 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.+.|.||.|+||||++ ..+..++
T Consensus 8 ~i~i~G~~GsGKSTl~-~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA-QALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4789999999999764 4555554
No 372
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=81.81 E-value=0.73 Score=44.78 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.1
Q ss_pred CEEEEcCCCCChHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv 436 (806)
.+.|.|++||||||+..
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 373
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=81.74 E-value=1.3 Score=47.57 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=24.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
..+.|.|+||+||||++...+..+.. .+.++.++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~--~~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIR--EGLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 45789999999999987665554433 345666654
No 374
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.65 E-value=0.92 Score=58.48 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=36.2
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL 468 (806)
..++|.||||+|||+.+...+....+ .+.++++++.-.+.....++++
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~~~~~--~G~~vlyis~E~s~~~~~a~~l 431 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL 431 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEccCchHHHHHHHc
Confidence 36899999999999999888887775 3568888887666555444433
No 375
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=81.51 E-value=0.8 Score=50.38 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=25.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhC----CCCeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTR----EHSRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~----~~~rILv~apSN 458 (806)
..+.|.||||+|||+.+...+...+... .+.+++++....
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 4689999999999998765544333210 235666665443
No 376
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.29 E-value=0.96 Score=58.30 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=36.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL 468 (806)
..++|.||||||||+.....+...+. .+.++++++.....-+...+++
T Consensus 35 ~i~lI~G~pGsGKT~LAlqla~~~~~--~G~~vlYI~te~~~~~l~~~~l 82 (1706)
T 3cmw_A 35 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARKL 82 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh--CCCceEEEEecCccHHHHHHhh
Confidence 36899999999999988887776665 4678888888776555554443
No 377
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=81.25 E-value=1.5 Score=47.31 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
..+++.|-+|.|||++.+..+..+.....+.|||++..-
T Consensus 19 ~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 19 KWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 456788999999999998888777621357888887654
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.19 E-value=0.99 Score=46.26 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=17.2
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..+.|.|++|+||||+.. ++...
T Consensus 49 ~~i~l~G~~GsGKSTl~~-~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGK-IMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHHh
Confidence 468999999999998644 44433
No 379
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=81.12 E-value=0.92 Score=48.94 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=15.8
Q ss_pred CEEEEcCCCCChHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i 439 (806)
.++|.||||+||||+...++
T Consensus 26 ~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 48899999999998654433
No 380
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=81.02 E-value=1.7 Score=45.41 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=23.9
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 422 VIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 422 lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
+..+-||.|||++.+..+..+.. .+.+||++-
T Consensus 97 vts~kgG~GKTtva~nLA~~lA~--~G~rVLLID 128 (286)
T 3la6_A 97 MTGVSPSIGMTFVCANLAAVISQ--TNKRVLLID 128 (286)
T ss_dssp EEESSSSSSHHHHHHHHHHHHHT--TTCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHh--CCCCEEEEe
Confidence 44456999999998888776664 467888764
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=81.02 E-value=1.9 Score=45.87 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=23.5
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCC-CCeEEEEec
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTRE-HSRILVCAA 456 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~-~~rILv~ap 456 (806)
.+.|.||+|+||||++ ..+..++...+ ..++.++..
T Consensus 94 iigI~GpsGSGKSTl~-~~L~~ll~~~~~~~~v~~i~~ 130 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS-RVLKALLSRWPDHPNVEVITT 130 (321)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHTTSTTCCCEEEEEG
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhcccCCCCeEEEEee
Confidence 3579999999999875 55666664322 335555553
No 382
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=80.92 E-value=1.3 Score=59.86 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 408 SVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 408 AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+...+.. ..|+++.||||||||+++...+. ..++..+..+.+
T Consensus 1259 ll~~~l~~--~~~vLL~GPpGtGKT~la~~~l~----~~~~~~~~~inf 1301 (2695)
T 4akg_A 1259 IFYDLLNS--KRGIILCGPPGSGKTMIMNNALR----NSSLYDVVGINF 1301 (2695)
T ss_dssp HHHHHHHH--TCEEEEECSTTSSHHHHHHHHHH----SCSSCEEEEEEC
T ss_pred HHHHHHHC--CCeEEEECCCCCCHHHHHHHHHh----cCCCCceEEEEe
Confidence 34444442 24699999999999987655443 234455555444
No 383
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=80.76 E-value=0.87 Score=45.09 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.1
Q ss_pred CEEEEcCCCCChHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv 436 (806)
.+.|.|++||||||++.
T Consensus 6 ~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 6 IVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 384
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=80.63 E-value=1 Score=44.99 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..+.|.||.|+||||++- ++..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~-~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIK-KLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHH-HHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHhh
Confidence 468999999999998654 44444
No 385
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=80.37 E-value=0.6 Score=46.81 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=11.5
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..+.|.||+|+||||++-.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp CEEEEECSCC----CHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3578999999999987543
No 386
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=80.12 E-value=1.5 Score=49.94 Aligned_cols=47 Identities=23% Similarity=0.349 Sum_probs=31.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLERL 468 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~erL 468 (806)
..++|.||||||||+.+...+..+ .. .+.+++++++-+... .+..+.
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~-~~-~G~~vi~~~~ee~~~-~l~~~~ 328 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA-CA-NKERAILFAYEESRA-QLLRNA 328 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH-HT-TTCCEEEEESSSCHH-HHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH-Hh-CCCCEEEEEEeCCHH-HHHHHH
Confidence 358999999999998766655443 32 356777777765533 444443
No 387
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.10 E-value=0.71 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=17.7
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+++|.||||||||++ +.++.+.+
T Consensus 590 ~vLl~Gp~GtGKT~l-A~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTEL-AKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHh
Confidence 689999999999975 45555544
No 388
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=79.61 E-value=0.87 Score=47.46 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.0
Q ss_pred CEEEEcCCCCChHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~ 438 (806)
.+.|.|+|||||||+....
T Consensus 77 iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999865433
No 389
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=79.60 E-value=0.67 Score=55.85 Aligned_cols=24 Identities=42% Similarity=0.747 Sum_probs=18.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..+++.||||||||++ +.++...+
T Consensus 512 ~~vLL~GppGtGKT~L-akala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLL-AKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHH-HHHHHHHH
T ss_pred ceeEEECCCCCCHHHH-HHHHHHHh
Confidence 3489999999999985 55555554
No 390
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=79.51 E-value=1.6 Score=50.53 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=30.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS 457 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS 457 (806)
..+++.|.+|+||||+.+..+..+.+ .+.|+|++...
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~--~G~rVLlvd~D 45 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAE--QGKRVLLVSTD 45 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHH--CCCcEEEEECC
Confidence 35789999999999999988887776 46788887654
No 391
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.41 E-value=0.86 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=18.2
Q ss_pred CCEEEEcCCCCChHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
..+.|.||||||||+.+...+..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999876655543
No 392
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=79.05 E-value=1.3 Score=49.78 Aligned_cols=64 Identities=13% Similarity=0.270 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEE-EecchHHHHHHHHHHhc
Q 038509 407 RSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILV-CAASNSAADHMLERLIS 470 (806)
Q Consensus 407 ~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv-~apSN~Aad~l~erL~~ 470 (806)
++|...+......-..|+|++|+|||+.+.+++.+..+.+++..|.+ |--...-+.++.+.+.+
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 45665543222234899999999999999998887655433333322 33334445555555544
No 393
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=78.76 E-value=1 Score=46.07 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.3
Q ss_pred CEEEEcCCCCChHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv 436 (806)
.+.|.||+||||||++-
T Consensus 29 ~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCK 45 (252)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=78.63 E-value=0.98 Score=43.62 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~ 440 (806)
++|.|++|+|||++..+.+.
T Consensus 19 vli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 19 VLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999998766554
No 395
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=78.40 E-value=10 Score=34.33 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=52.4
Q ss_pred eeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccccccCeeeCCCCeEEEEE
Q 038509 58 QSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSIEDRVLQPLRTLTIWL 137 (806)
Q Consensus 58 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 137 (806)
..+..|++..++++|+|.|..+..=..++++--+ . .+... ...|.||++.++.+
T Consensus 27 ~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng-~----------------------~v~t~---~v~La~G~s~tv~f 80 (127)
T 3idu_A 27 DVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYING-T----------------------LYKNW---TVSLGPKEEKVLTF 80 (127)
T ss_dssp SEECTTCCEEEEEEEEECSSSCEEEEEEEEEETT-E----------------------EEEEE---EEEECTTCEEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCccCCcEEEEEECC-E----------------------EEeeE---EeccCCCCeEEEEE
Confidence 3688899999999999999999876666664211 0 01111 12499999999999
Q ss_pred EEecCCCceeeEEEEEEe
Q 038509 138 SCKPKEMGLHKSVVQFDI 155 (806)
Q Consensus 138 ~~~~~~~g~~~~~~~~~f 155 (806)
.+.+...|.|.-....+=
T Consensus 81 ~~~~~~~G~~~v~AvVD~ 98 (127)
T 3idu_A 81 NWTPTQEGMYRINATVDE 98 (127)
T ss_dssp EECCSSCEEEEEEEEEST
T ss_pred EEEcCCCcEEEEEEEEcC
Confidence 999998888866655553
No 396
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=78.39 E-value=1.1 Score=48.30 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHH
Q 038509 406 TRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 406 ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..|+..++.-.....+.|.||+|+||||++-. |..+
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~-I~g~ 94 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGM-ICNG 94 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHH-HHHH
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHH-HhcC
Confidence 36888775433334689999999999988544 4434
No 397
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=78.38 E-value=1.3 Score=44.82 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=15.1
Q ss_pred EEEEcCCCCChHHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~q 441 (806)
.-|.|||||||||.. ..+.+
T Consensus 11 ~~~~G~pGsGKsT~a-~~L~~ 30 (230)
T 3gmt_A 11 LILLGAPGAGKGTQA-NFIKE 30 (230)
T ss_dssp EEEECCTTSCHHHHH-HHHHH
T ss_pred eeeECCCCCCHHHHH-HHHHH
Confidence 679999999999764 44443
No 398
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=78.37 E-value=1.2 Score=44.69 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=14.6
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.+.|.|++||||||+...
T Consensus 18 ~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp EEEEECSSCSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986443
No 399
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=78.36 E-value=1.2 Score=45.02 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=17.2
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.+.|.||.||||||++ ..+..++
T Consensus 27 iigI~G~~GsGKSTl~-k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC-EKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 4679999999999865 4454444
No 400
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.27 E-value=1.1 Score=44.80 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.++.|.||.|+||||.+- ++..+
T Consensus 17 ~ii~l~GpsGsGKSTLlk-~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQ-ALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHH-HHHHH
T ss_pred cEEEEECCCCCCHHHHHH-HHhcc
Confidence 468999999999998654 44443
No 401
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=78.21 E-value=1.2 Score=49.83 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEE-EEecchHHHHHHHHHHhc
Q 038509 407 RSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRIL-VCAASNSAADHMLERLIS 470 (806)
Q Consensus 407 ~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rIL-v~apSN~Aad~l~erL~~ 470 (806)
++|...+......-..|+|+||+|||+.+.+++.+..+.++.-.|. .|--...-+.++.+.+..
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhh
Confidence 5666655321122379999999999999988888765433322222 233334444455555543
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=78.18 E-value=1.1 Score=48.21 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=16.4
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.++|.||+|||||+....++.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 478999999999986554443
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=78.15 E-value=1.1 Score=42.94 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=18.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+..+|.||-|+|||++ .++|..++
T Consensus 27 g~~~i~G~NGsGKStl-l~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNI-GDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHH-HHHHHHHT
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 3579999999999975 56666554
No 404
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=78.07 E-value=1.2 Score=43.95 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=17.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..+.|.||.|+||||++ .++..++
T Consensus 21 ei~~l~GpnGsGKSTLl-~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVV-RCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHS
T ss_pred CEEEEECCCCCCHHHHH-HHHHhhC
Confidence 46889999999999865 4444443
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.85 E-value=1.7 Score=45.76 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=22.1
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHh-CCCCeEEEE
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYST-REHSRILVC 454 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~-~~~~rILv~ 454 (806)
.+.|.||+|+||||++ ..+..++.. .....|.++
T Consensus 82 iigI~G~~GsGKSTl~-~~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTA-RVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp EEEEEECTTSSHHHHH-HHHHHHHTTSTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHH-HHHHHHHhhCCCCCeEEEE
Confidence 5779999999999865 455555531 123456663
No 406
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.81 E-value=1.8 Score=49.14 Aligned_cols=40 Identities=18% Similarity=0.377 Sum_probs=29.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCC--CeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREH--SRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~--~rILv~apSN 458 (806)
+.++|.|++|||||+.+-..+..++....+ -++.++=|..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 568999999999999998888887754422 2555555543
No 407
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=77.78 E-value=0.8 Score=50.67 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
..++|.|+|||||||....
T Consensus 259 ~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3578999999999986443
No 408
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=77.76 E-value=2.1 Score=47.82 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhC
Q 038509 408 SVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTR 446 (806)
Q Consensus 408 AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~ 446 (806)
++......-...-.+|+||||+|||+.+..++.+.....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~ 179 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEH 179 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhcc
Confidence 566554311123479999999999999888877766543
No 409
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.69 E-value=1.3 Score=60.31 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecc-hHHHHHHHHHHh
Q 038509 406 TRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAAS-NSAADHMLERLI 469 (806)
Q Consensus 406 ~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apS-N~Aad~l~erL~ 469 (806)
...+...+.. ..|+++.||||||||+++...+.. .++..++.+.+| ...++.+...+.
T Consensus 1294 ~~ll~~ll~~--~~pvLL~GptGtGKT~li~~~L~~----l~~~~~~~infS~~Tta~~l~~~~e 1352 (3245)
T 3vkg_A 1294 VDVLHAWLSE--HRPLILCGPPGSGKTMTLTSTLRA----FPDFEVVSLNFSSATTPELLLKTFD 1352 (3245)
T ss_dssp HHHHHHHHHT--TCCCEEESSTTSSHHHHHHHHGGG----CTTEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHC--CCcEEEECCCCCCHHHHHHHHHHh----CCCCceEEEEeeCCCCHHHHHHHHh
Confidence 3345555553 347999999999999987655432 344455555554 333444555443
No 410
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=77.60 E-value=1.6 Score=50.15 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhC--CCCCCEEEEcCCCCChHHHHHHHHH
Q 038509 403 EEQTRSVEIILGC--KGAPPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 403 ~eQ~~AV~~il~~--~~~~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
+...+.+...+.. .+...+.|.||+|.|||+.+.+.+.
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3444555555542 2234689999999999998766554
No 411
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=77.51 E-value=1.1 Score=45.00 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+.|.|-.|+||||+.+..+..+.+ .+.|||++-.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~--~g~~VlliD~ 36 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS--DYDKIYAVDG 36 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT--TCSCEEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH--CCCeEEEEeC
Confidence 345899999999999888877654 4688887643
No 412
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=77.48 E-value=1.9 Score=45.17 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=26.5
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.|-.|+||||+.+..+..+.+ .+.+||++=
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~--~G~~VlliD 76 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIG 76 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 3456699999999999988887776 367888763
No 413
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.30 E-value=1.4 Score=46.78 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+.++|.|+-|+||||++-..+ ....+.++.|+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~----~~~~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHIL----NEQHGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHH----HSCCCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHH----hhcCCCcEEEEEe
Confidence 457999999999998764433 2235677777765
No 414
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=77.22 E-value=1.3 Score=57.82 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEecchHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAASNSAADHMLER 467 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~apSN~Aad~l~er 467 (806)
..++|.||||||||+.+...+.+.++ .+.+++.++..+...+...++
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k--~Ge~~~Fit~ee~~~~L~a~~ 1128 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIYARK 1128 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEccccHHHHHHHH
Confidence 35899999999999998888877765 478999999877665555433
No 415
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=76.98 E-value=2.1 Score=44.29 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=25.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC 454 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ 454 (806)
+.|.|-.|+||||+.+..+..+.+ .+.+||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~--~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHH--CCCeEEEE
Confidence 445799999999999998887765 36788874
No 416
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=76.97 E-value=1.4 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.092 Sum_probs=16.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
..+++.|++|+||||.+.....
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999986554443
No 417
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=76.92 E-value=1.3 Score=43.70 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=14.4
Q ss_pred CEEEEcCCCCChHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv 436 (806)
.+.|.|+||||||++..
T Consensus 5 ~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999998643
No 418
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=76.90 E-value=3.3 Score=41.59 Aligned_cols=43 Identities=16% Similarity=0.018 Sum_probs=24.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEE--EecchHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILV--CAASNSAADH 463 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv--~apSN~Aad~ 463 (806)
.++|.|++|+||||.+..... .+....+..+.+ --|......+
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~-~l~~~~g~~v~~~treP~~t~~g~ 67 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAE-YLSEIYGVNNVVLTREPGGTLLNE 67 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHHHCGGGEEEEESSCSSHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHhhccCceeeEeeeCCCCChHHH
Confidence 467899999999987555444 443201334444 2455444433
No 419
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=76.84 E-value=4 Score=39.91 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=26.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE-ecchHHHHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC-AASNSAADHMLER 467 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~-apSN~Aad~l~er 467 (806)
+.|.|+-|+||||.+. .+.+.+... +.+++.+ =|......+...+
T Consensus 3 I~~EG~DGsGKsTq~~-~L~~~L~~~-g~~v~~treP~~t~~~~~ir~ 48 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQ-LLAQYLEKR-GKKVILKREPGGTETGEKIRK 48 (197)
T ss_dssp EEEECSTTSSHHHHHH-HHHHHHHHT-TCCEEEEESSCSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHC-CCcEEEEECCCCCcHHHHHHH
Confidence 5688999999998654 455555443 4455444 3444443333333
No 420
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=76.40 E-value=2.2 Score=45.13 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=23.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCC-CeEEEEec
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREH-SRILVCAA 456 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~-~rILv~ap 456 (806)
.+.|.||+|+||||++ ..+..++....+ .+|-++..
T Consensus 92 ivgI~G~sGsGKSTL~-~~L~gll~~~~G~~~v~~v~q 128 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTA-RVLQALLARWDHHPRVDLVTT 128 (312)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHHHTSTTCCCEEEEEG
T ss_pred EEEEECCCCchHHHHH-HHHHhhccccCCCCeEEEEec
Confidence 5789999999999764 566666653322 35555443
No 421
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=76.29 E-value=2.6 Score=41.52 Aligned_cols=34 Identities=15% Similarity=0.085 Sum_probs=25.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
++..+-+|+|||++.+..+..+.+ .+.|||++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~--~G~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKA--AGYRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHH--TTCCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--CCCCEEEEcc
Confidence 344556999999999988887765 4688988643
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=76.00 E-value=0.92 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.0
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.++|.||.|||||++...++.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999987665443
No 423
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=75.98 E-value=1.1 Score=46.90 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=13.9
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
.+.|.||+||||||+.. .+.+.+
T Consensus 7 iIgItG~sGSGKSTva~-~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKH-TFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHH-HHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHHHH
Confidence 47899999999998654 444433
No 424
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=75.77 E-value=1.6 Score=45.78 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.0
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+.|.||+|+||||+ +..+..++.
T Consensus 33 ii~I~G~sGsGKSTl-a~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT-SIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHHhh
Confidence 467999999999976 455555554
No 425
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=75.72 E-value=2.1 Score=43.64 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC 454 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ 454 (806)
+.|.|-.|+||||+.+..+..+.+ .+.+||++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~--~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHH--CCCcEEEE
Confidence 345789999999999888877664 46788874
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.57 E-value=1.3 Score=46.75 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=16.5
Q ss_pred CEEEEcCCCCChHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ 440 (806)
.++|.||+|+|||+.....+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 478999999999987655443
No 427
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.48 E-value=1.2 Score=47.16 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=16.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAIL 440 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ 440 (806)
+.++|.||.|+|||+.....+.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 3578999999999987655443
No 428
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.72 E-value=2.4 Score=48.54 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=31.9
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHHhCC--CCeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYSTRE--HSRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~~~~--~~rILv~apSN 458 (806)
+.++|.|.+|||||+++..+|..++.... .-+++++=|..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 56899999999999999999999886543 24667777765
No 429
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=74.70 E-value=1.6 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.3
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+..
T Consensus 4 i~v~G~~~~GKSsli~~ 20 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNR 20 (161)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 430
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=74.63 E-value=3 Score=42.34 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.3
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+..+-.|+|||++.+..+..+.+ .+.+||++-
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQ--LGHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHh--CCCcEEEEE
Confidence 466788999999999988877765 367888865
No 431
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=74.60 E-value=1.4 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.1
Q ss_pred CEEEEcCCCCChHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.++|.||+|+|||+....++..
T Consensus 4 ~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHH
Confidence 4789999999999876555443
No 432
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=74.54 E-value=7 Score=41.85 Aligned_cols=70 Identities=21% Similarity=0.332 Sum_probs=43.4
Q ss_pred cceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCccccc--ccccccCeeeCCCCeEEEEEEEe
Q 038509 63 GETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFL--EGFSIEDRVLQPLRTLTIWLSCK 140 (806)
Q Consensus 63 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~ 140 (806)
|.+-.+++.|+|+|+++|.|-...-++ +..++|.-...+...-...+ +..+ ++.-|.|||+-++.+++.
T Consensus 297 gR~l~~~~~VtN~g~~pvrlgeF~tA~--------vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~pI~PGETrt~~V~a~ 367 (419)
T 3rfr_A 297 GRELTINVKVKNGTSQPVRLGEYTAAG--------LRFLNPTVFTQKPDFPDYLLADRGLS-NDDVIAPGESKEIVVKIQ 367 (419)
T ss_dssp SSEEEEEEEEECCSSSCBEEEEEECSS--------CEEECTTTCSSCCCCCTTTEESCCCC-CCCCBCTTCEEEEEEEEE
T ss_pred CcEEEEEEEEecCCCCceEEeeEEEcc--------EEEeCcccccCCCCCchhhhhccCCC-CCCCcCCCcceEEEEEee
Confidence 888899999999999999988754431 33344321000000011111 1233 333899999999999998
Q ss_pred c
Q 038509 141 P 141 (806)
Q Consensus 141 ~ 141 (806)
-
T Consensus 368 d 368 (419)
T 3rfr_A 368 D 368 (419)
T ss_dssp C
T ss_pred h
Confidence 4
No 433
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=74.36 E-value=1.4 Score=44.47 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.7
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
.++|.|++|+||||.+..
T Consensus 4 ~i~~~G~~g~GKtt~~~~ 21 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKL 21 (241)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999986543
No 434
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=73.95 E-value=1.7 Score=42.08 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=13.8
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+-
T Consensus 8 v~lvG~~g~GKSTLl~ 23 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLS 23 (199)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 6899999999998654
No 435
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.59 E-value=2 Score=42.24 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=19.7
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
+..+|.||-|+|||+. .++|..++.
T Consensus 24 ~~~~I~G~NgsGKSti-l~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL-LDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHH-HHHHHHHhc
Confidence 4579999999999975 566766664
No 436
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=73.55 E-value=1.7 Score=42.53 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCChHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~ 437 (806)
.-++|.|++|+|||+.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~ 31 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTL 31 (218)
T ss_dssp CEEEEECSTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3479999999999987543
No 437
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=73.48 E-value=1.9 Score=45.47 Aligned_cols=42 Identities=24% Similarity=0.493 Sum_probs=25.9
Q ss_pred HHHHHHH-hCCCCCCEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEE
Q 038509 407 RSVEIIL-GCKGAPPYVIYGPPGTGKTMTLVEAILQVYSTREHSRILV 453 (806)
Q Consensus 407 ~AV~~il-~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv 453 (806)
.+++.+- .-.....+.|.||+|+||||. +.++..++ ..+|++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTL-l~lL~gl~----~G~I~~ 156 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSML-CNSLIHFL----GGSVLS 156 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHH-HHHHHHHH----TCEEEC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHH-HHHHhhhc----CceEEE
Confidence 3454442 222334588999999999975 45555565 346643
No 438
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=73.21 E-value=2.5 Score=40.96 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=25.0
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 422 VIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 422 lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+..+-.|+||||+.+..+..+.. .+.+||++-.
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~--~g~~vlliD~ 38 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSR--SGYNIAVVDT 38 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEEC
Confidence 34467899999999888887765 4678887654
No 439
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=73.16 E-value=2.6 Score=45.48 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.4
Q ss_pred CCEEEEcCCCCChHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEA 438 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~ 438 (806)
..++|.||.|+||||++..+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l 195 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKAL 195 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999876543
No 440
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=73.05 E-value=2.9 Score=42.67 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=25.7
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+..+-.|+||||+.+..+..+.+ .+.+||++=
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~--~G~~VlliD 54 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYAR--QGKKVGILD 54 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 456678899999999988887765 467888854
No 441
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=72.73 E-value=8.7 Score=33.45 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=49.9
Q ss_pred EecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccccccCeeeCCCCeEEEEEEEe
Q 038509 61 LVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSIEDRVLQPLRTLTIWLSCK 140 (806)
Q Consensus 61 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 140 (806)
++|+.-.+.|..+|.-+++++=...++.|+.=... -+.+-..|.||+++.+.+.|.
T Consensus 17 ~v~~~l~v~vsf~NPL~~~L~~c~~~vEG~GL~~~------------------------~~~~~~~v~pg~~~~~~~~~~ 72 (102)
T 2xzz_A 17 VVGQECEVQIVFKNPLPVTLTNVVFRLEGSGLQRP------------------------KILNVGDIGGNETVTLRQSFV 72 (102)
T ss_dssp CSSSCEEEEEEEECCSSSCBCSEEEEEEETTTEEE------------------------EEEEECCBCTTCEEEEEEEEC
T ss_pred ccCCeEEEEEEEECCCCCcccCEEEEEECCCCCcc------------------------eEEEcCcCCCCCEEEEEEEEe
Confidence 56888899999999999987666656665433222 111113489999999999999
Q ss_pred cCCCceeeEEEEE
Q 038509 141 PKEMGLHKSVVQF 153 (806)
Q Consensus 141 ~~~~g~~~~~~~~ 153 (806)
|...|..+-+.-|
T Consensus 73 P~~~G~~~L~a~f 85 (102)
T 2xzz_A 73 PVRPGPRQLIASL 85 (102)
T ss_dssp CCSCSSCCCEEEE
T ss_pred cCcccceEEEEEE
Confidence 9999997744443
No 442
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=72.70 E-value=4.8 Score=45.29 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHHHHHh------CCCCeE--EEEecchHHHHHHHHHHhc
Q 038509 407 RSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQVYST------REHSRI--LVCAASNSAADHMLERLIS 470 (806)
Q Consensus 407 ~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~qll~~------~~~~rI--Lv~apSN~Aad~l~erL~~ 470 (806)
+||...+.-....-.+|+|++|||||+.+...|.+-... +.+-.+ +.+--...-+.++.+.+..
T Consensus 151 raID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 151 KAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp HHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 567666532112237999999999999977777665542 122222 2344455666667777665
No 443
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=72.55 E-value=1.8 Score=41.72 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
+.|.|++|+|||+.+-
T Consensus 32 v~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 6899999999998654
No 444
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=72.53 E-value=2 Score=39.69 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.4
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+..
T Consensus 8 i~v~G~~~~GKssl~~~ 24 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQR 24 (168)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999986543
No 445
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=72.47 E-value=2 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.3
Q ss_pred CEEEEcCCCCChHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+++.|+||+||||+....+..+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999998765544443
No 446
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=72.46 E-value=3 Score=42.08 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=25.4
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+..+-.|+||||+.+..+..+.+ .+.+||++=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD 38 (260)
T 3q9l_A 6 VVTSGKGGVGKTTSSAAIATGLAQ--KGKKTVVID 38 (260)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHh--CCCcEEEEE
Confidence 345677899999999988887775 467888754
No 447
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=72.45 E-value=3.1 Score=41.40 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=25.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+..+-.|+|||++.+..+..+.+ .+.+||++-.
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~--~g~~VlliD~ 39 (237)
T 1g3q_A 6 SIVSGKGGTGKTTVTANLSVALGD--RGRKVLAVDG 39 (237)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEecCCCCCCHHHHHHHHHHHHHh--cCCeEEEEeC
Confidence 345567899999999888877765 3678887654
No 448
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=72.28 E-value=2 Score=39.45 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|+||+|||+.+.
T Consensus 6 i~v~G~~~~GKSsli~ 21 (167)
T 1kao_A 6 VVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998653
No 449
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=72.24 E-value=4.5 Score=38.23 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=46.4
Q ss_pred eEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccccccccCeeeCCCCeEEEEEEE
Q 038509 60 ILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFSIEDRVLQPLRTLTIWLSC 139 (806)
Q Consensus 60 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 139 (806)
+..||+..+-..++|.+++++.-.++== -. |. .....=+.++||+++.-.|.|||++..=|.+
T Consensus 58 V~pGE~~~~~y~a~N~sd~~i~G~A~yn--V~-----------P~----~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F 120 (164)
T 1so9_A 58 VRIGETVQIMYRAKNLASTPTTGQATFN--VT-----------PM----AAGAYFNKVQCFCFTETTLEPGEEMEMPVVF 120 (164)
T ss_dssp ECTTCCCCEEEEEEECSSSCEECCCEEE--EC-----------SS----SCSTTBTTSCCSSCSCCEECTTCEEEEEECC
T ss_pred EcCCCeEEEEEEEECCCCCcEEEEECce--eC-----------HH----HHhhhccceeeEcccCcccCCCCeEeeeEEE
Confidence 3349999999999999999987655211 11 11 1122335899999999999999999877655
Q ss_pred e
Q 038509 140 K 140 (806)
Q Consensus 140 ~ 140 (806)
-
T Consensus 121 ~ 121 (164)
T 1so9_A 121 F 121 (164)
T ss_dssp C
T ss_pred E
Confidence 3
No 450
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=72.18 E-value=3 Score=47.48 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=24.1
Q ss_pred CCEEEEcCCCCChHHHHHHH-HHHHHHhCCCCeEEEEecch
Q 038509 419 PPYVIYGPPGTGKTMTLVEA-ILQVYSTREHSRILVCAASN 458 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~-i~qll~~~~~~rILv~apSN 458 (806)
..++|.||+||||||.+... +.-++. ++...+.++...
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~ 78 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEE 78 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeC
Confidence 46899999999999877664 334443 233344444443
No 451
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=72.16 E-value=1.9 Score=39.45 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+.
T Consensus 6 i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998744
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=72.14 E-value=2 Score=40.08 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|+||+|||+.+.
T Consensus 6 v~lvG~~gvGKStL~~ 21 (165)
T 2wji_A 6 IALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998654
No 453
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=71.61 E-value=2.1 Score=40.93 Aligned_cols=18 Identities=39% Similarity=0.580 Sum_probs=14.9
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
-++|.|++|+|||+.+..
T Consensus 50 ~i~vvG~~g~GKSsll~~ 67 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTL 67 (193)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 479999999999986543
No 454
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=70.93 E-value=2.2 Score=39.86 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.4
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|+||+|||+.+..
T Consensus 10 i~v~G~~~~GKSsli~~ 26 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNR 26 (177)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 455
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=70.69 E-value=2.2 Score=45.48 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..++|.||.|+||||++.. +..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~-l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKS-IMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHH-GGGGS
T ss_pred CEEEEECCCCCCHHHHHHH-HhCCC
Confidence 4589999999999986543 44443
No 456
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=70.65 E-value=2.6 Score=46.83 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=26.4
Q ss_pred CCCCCCEEEEEEcCCC-CCceEEEEEEEeCCEEEEEeCC
Q 038509 301 SLVHGDFVFVKLAAAN-ADAKKGSIYRVEADEVILKFAK 338 (806)
Q Consensus 301 ~l~~GD~v~v~~~~~~-~~~~~G~v~~v~~~~v~l~~~~ 338 (806)
....|+.+.+...+.. .....|.|..+..+.+.+-.-.
T Consensus 27 ~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~ 65 (438)
T 2dpy_A 27 QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLE 65 (438)
T ss_dssp CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESS
T ss_pred CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEcc
Confidence 4678999999753321 1146799989998888876543
No 457
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=70.62 E-value=2.2 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=14.3
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+..
T Consensus 6 i~v~G~~~~GKssli~~ 22 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVR 22 (170)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999986543
No 458
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.57 E-value=2.3 Score=39.21 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+-
T Consensus 6 i~v~G~~~~GKssli~ 21 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVL 21 (170)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998654
No 459
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=70.49 E-value=50 Score=29.83 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=52.9
Q ss_pred CCeEEeeccCCCCCcceeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCccccccccc
Q 038509 42 GPVIISVPFPFVQGKPQSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLEGFS 121 (806)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (806)
.||.|+....|....-..-..--.+.-+|+|+|.|++++.|.+-.-.=.+.... .+-+ +.-.
T Consensus 7 ~~I~V~V~~~y~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~--~~eV----------------~G~G 68 (127)
T 2f1e_A 7 YRVEVEVSPRFLAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGR--TEQV----------------DGEG 68 (127)
T ss_dssp CCEEEEEEEEECSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSC--EEEE----------------EESS
T ss_pred CCEEEEEEEEEchhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCC--EEEE----------------ECCC
Confidence 588998877766443222111223566999999999999998733211111111 1101 0000
Q ss_pred c--cCeeeCCCCeEEEEEEEe-cCCCceeeEEEEEE
Q 038509 122 I--EDRVLQPLRTLTIWLSCK-PKEMGLHKSVVQFD 154 (806)
Q Consensus 122 ~--~~~~~~~g~~~~~~~~~~-~~~~g~~~~~~~~~ 154 (806)
+ +--.|.||++.+++=.|. ..-.|.-.-.+.+.
T Consensus 69 VVG~qP~L~PGe~f~YtSg~~L~tp~G~M~G~y~m~ 104 (127)
T 2f1e_A 69 VVGEQPWLRPGEAFHYTSGVLLETEQGQMQGHYDMV 104 (127)
T ss_dssp BTTBCCEECTTCEEEEEEEEEESSSCEEEEEEEEEE
T ss_pred eecCCCcCCCCCceEEeCCcCcCCCcEEEEEEEEEE
Confidence 1 112799999888886665 34456555555443
No 460
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=70.30 E-value=2.3 Score=39.79 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.4
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+..
T Consensus 11 i~v~G~~~~GKSsli~~ 27 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHR 27 (182)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999986543
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=70.28 E-value=1.8 Score=44.26 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.2
Q ss_pred CEEEEcCCCCChHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv 436 (806)
.++|.|++||||||.+.
T Consensus 26 ~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVN 42 (263)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 462
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=70.23 E-value=2.4 Score=38.96 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.2
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+..
T Consensus 7 i~v~G~~~~GKssl~~~ 23 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQ 23 (168)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 463
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=69.92 E-value=3.1 Score=38.73 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=18.6
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
+..+|.||.|+|||+. .++|..++
T Consensus 24 g~~~I~G~NGsGKSti-l~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL-LDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHH
Confidence 3579999999999975 56666554
No 464
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=69.57 E-value=3.5 Score=44.19 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=40.0
Q ss_pred ceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCCCcccccc--cccccCe-eeCCCCeEEEEEEEe
Q 038509 64 ETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQKDQGFLE--GFSIEDR-VLQPLRTLTIWLSCK 140 (806)
Q Consensus 64 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~g~~~~~~~~~~ 140 (806)
+--.+.++|+|+|+++++|..+-++...+.+.|.+.--+. .+.-.+-+++ .-..++- .|.||++++..+...
T Consensus 36 ~~~~vk~tvtN~g~~~~~lLk~~~lD~~~~~~~~V~~~G~-----~v~f~Gi~~~~~~~~~d~f~~L~pG~Sve~~~dla 110 (343)
T 2x3c_A 36 DDVRVNLTLTNTGDKPIRLLKWQLPGSDDAPLFLVERDGQ-----PVSYEGALIKRAAPTDKDFQLLKAGQSLTVQAEVS 110 (343)
T ss_dssp SCCEEEEEEEECSSSCEEEEGGGSCSSSCCCCEEEEETTE-----ECCBCSCCCCCCCCCGGGEEEECTTCEEEEEEECT
T ss_pred CCeEEEEEEEeCCCCceEeeccCCCCcCccceEEEEeCCc-----ccceeeEEEeccCCChhhcEEeCCCCeEEEEEehh
Confidence 4458899999999999999773233323333344432111 0110111100 0112232 799999999998864
No 465
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=69.56 E-value=2.5 Score=39.88 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=17.8
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..+.|.||-|+||||.+- .+..++
T Consensus 34 e~v~L~G~nGaGKTTLlr-~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTR-GMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHH-HHHHHT
T ss_pred CEEEEECCCCCCHHHHHH-HHHHhC
Confidence 357899999999997654 444444
No 466
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=69.44 E-value=2.5 Score=39.05 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+-
T Consensus 6 i~v~G~~~~GKssli~ 21 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVL 21 (172)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998654
No 467
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=69.32 E-value=2.8 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCChHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAI 439 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i 439 (806)
..+.|.|++|.|||+.+.+..
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHH
Confidence 457899999999998655433
No 468
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=69.12 E-value=2.4 Score=46.14 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=26.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
+++.|..|+||||+.+..+..+.. .+.++|++..
T Consensus 5 ~~~~gkGG~GKTt~a~~la~~la~--~g~~vllvd~ 38 (374)
T 3igf_A 5 LTFLGKSGVARTKIAIAAAKLLAS--QGKRVLLAGL 38 (374)
T ss_dssp EEEECSBHHHHHHHHHHHHHHHHH--TTCCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHH--CCCCeEEEeC
Confidence 578899999999998888877765 3577766554
No 469
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=68.94 E-value=2.8 Score=46.15 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHH
Q 038509 405 QTRSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 405 Q~~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
.++++..+... .+.+.|.||+|+||||++- ++.-
T Consensus 58 i~~~L~~~~~~--~~~valvG~nGaGKSTLln-~L~G 91 (413)
T 1tq4_A 58 ISDALKEIDSS--VLNVAVTGETGSGKSSFIN-TLRG 91 (413)
T ss_dssp HHHHHHHHHHC--CEEEEEEECTTSSHHHHHH-HHHT
T ss_pred hhhhhhhcccC--CeEEEEECCCCCcHHHHHH-HHhC
Confidence 34444444432 2357899999999998654 3443
No 470
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=68.89 E-value=3.5 Score=41.14 Aligned_cols=35 Identities=9% Similarity=0.107 Sum_probs=25.6
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEec
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCAA 456 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~ap 456 (806)
.+..+-.|+||||+.+..+..+.+. .+.+||++-.
T Consensus 8 ~v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD~ 42 (245)
T 3ea0_A 8 GFVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVDI 42 (245)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEEC
T ss_pred EEECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEEC
Confidence 3556779999999988887766542 3788888644
No 471
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=68.88 E-value=2.6 Score=38.89 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.3
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~ 25 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWR 25 (170)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999986543
No 472
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=68.86 E-value=2.6 Score=39.19 Aligned_cols=16 Identities=44% Similarity=0.679 Sum_probs=13.8
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|+||+|||+.+-
T Consensus 7 i~i~G~~~vGKSsl~~ 22 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLAS 22 (175)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCccHHHHHH
Confidence 7899999999998653
No 473
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=68.84 E-value=4.1 Score=40.06 Aligned_cols=38 Identities=26% Similarity=0.156 Sum_probs=26.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE--ecchHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC--AASNSAA 461 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~--apSN~Aa 461 (806)
.+..+-.|+||||+.+..+..+.+ .+ +||++ -+.+.+.
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~--~g-~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLAL--QG-ETLLIDGDPNRSAT 43 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHT--TS-CEEEEEECTTCHHH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHh--cC-CEEEEECCCCCCHH
Confidence 356788999999998888776654 35 88774 3444443
No 474
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=68.71 E-value=2.7 Score=38.87 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=14.0
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+-
T Consensus 9 i~v~G~~~~GKssli~ 24 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVL 24 (170)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 6899999999998753
No 475
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=68.65 E-value=7.8 Score=38.12 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=23.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEE-ecchHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVC-AASNSAA 461 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~-apSN~Aa 461 (806)
.+.|-|+.|+||||.+. .+.+.+. .+.+++.+ =|+....
T Consensus 4 FI~~EG~dGsGKsTq~~-~L~~~L~--~~~~v~~~~eP~~t~~ 43 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVIN-EVYHRLV--KDYDVIMTREPGGVPT 43 (205)
T ss_dssp EEEEECCTTSCHHHHHH-HHHHHHT--TTSCEEEEESSTTCHH
T ss_pred EEEEECCCCCcHHHHHH-HHHHHHH--CCCCEEEeeCCCCChH
Confidence 36788999999998654 4444443 34555544 3444433
No 476
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=68.64 E-value=10 Score=40.14 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=21.1
Q ss_pred CCCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 418 APPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 418 ~~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+.|+++||+|+||++++...+..+..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~ 44 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAA 44 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHh
Confidence 456999999999999987766665543
No 477
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=68.52 E-value=2.7 Score=38.71 Aligned_cols=16 Identities=25% Similarity=0.530 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+.
T Consensus 9 i~v~G~~~~GKssli~ 24 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVL 24 (170)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998653
No 478
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=68.42 E-value=2.8 Score=38.85 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.7
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|+||+|||+.+-
T Consensus 5 i~ivG~~~~GKSsli~ 20 (169)
T 3q85_A 5 VMLVGESGVGKSTLAG 20 (169)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999997643
No 479
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=68.41 E-value=2.5 Score=40.39 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.1
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
-++|.|++|+|||+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~ 42 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINS 42 (195)
T ss_dssp EEEEEEBTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999987544
No 480
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=68.40 E-value=2.8 Score=39.22 Aligned_cols=18 Identities=33% Similarity=0.296 Sum_probs=14.9
Q ss_pred CEEEEcCCCCChHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~ 437 (806)
-++|.|++|+|||+.+..
T Consensus 10 ~i~v~G~~~~GKssl~~~ 27 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDA 27 (178)
T ss_dssp EEEEESCTTTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999986543
No 481
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=68.24 E-value=2.8 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=17.6
Q ss_pred CEEEEcCCCCChHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
.+++.|.||+||||+....+..+
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999998765554443
No 482
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=68.04 E-value=2.8 Score=38.53 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=13.7
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+-
T Consensus 6 i~v~G~~~~GKssli~ 21 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTV 21 (167)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998644
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=67.65 E-value=2.4 Score=40.36 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+.
T Consensus 5 v~ivG~~gvGKStLl~ 20 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQ 20 (184)
T ss_dssp EEEESCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999998654
No 484
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=67.55 E-value=2.8 Score=39.15 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=13.9
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+-
T Consensus 17 i~v~G~~~~GKssli~ 32 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLIT 32 (179)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999998654
No 485
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=67.54 E-value=2.2 Score=41.50 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.3
Q ss_pred CEEEEcCCCCChHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLV 436 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv 436 (806)
.+.|.|++|+|||+.+-
T Consensus 28 ~v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALN 44 (210)
T ss_dssp EEEEEECTTSSHHHHHT
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37999999999998653
No 486
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=67.49 E-value=5.1 Score=42.34 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=28.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA 455 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a 455 (806)
.+.|.|==|.|||||.+..+..|.+ .++|||++=
T Consensus 50 VIAIaGKGGVGKTTtavNLA~aLA~--~GkkVllID 83 (314)
T 3fwy_A 50 VFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIG 83 (314)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEE
T ss_pred EEEEECCCccCHHHHHHHHHHHHHH--CCCeEEEEe
Confidence 5678899999999999999988876 468888864
No 487
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.46 E-value=1.7 Score=41.70 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=17.8
Q ss_pred CEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 420 PYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 420 ~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
.+.|.|+.|+||||++ .++..++.
T Consensus 4 ~v~IvG~SGsGKSTL~-~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI-TRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhh
Confidence 3679999999999765 45555554
No 488
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=67.45 E-value=3.6 Score=46.91 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCCCEEEEcCCCCChHHHHHHHHHH
Q 038509 407 RSVEIILGCKGAPPYVIYGPPGTGKTMTLVEAILQ 441 (806)
Q Consensus 407 ~AV~~il~~~~~~~~lI~GPPGTGKT~tlv~~i~q 441 (806)
+||...+......-..|+||+|+|||+++.+++.+
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhc
Confidence 56666553222234799999999999988765543
No 489
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=67.12 E-value=2.5 Score=42.18 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=17.1
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQV 442 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~ql 442 (806)
..+.|.||.|+||||.+ .++.-+
T Consensus 36 e~~~iiG~NGsGKSTLl-k~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLL-KTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHH-HHHTTS
T ss_pred CEEEEECCCCCCHHHHH-HHHhcC
Confidence 45899999999999754 444444
No 490
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=67.10 E-value=3.1 Score=44.95 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=20.0
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVYS 444 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll~ 444 (806)
+.++|.||-|+||||. .++|..++.
T Consensus 24 g~~~i~G~NGaGKTTl-l~ai~~al~ 48 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSL-FEAISFALF 48 (365)
T ss_dssp EEEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHhc
Confidence 4689999999999965 577776665
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=66.84 E-value=3 Score=39.46 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=14.4
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+..
T Consensus 10 i~lvG~~gvGKStL~~~ 26 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNA 26 (188)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999986543
No 492
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=66.79 E-value=2.5 Score=43.08 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=28.1
Q ss_pred EEEEcCCCCChHHHHHHHHHHHHHhCCCCeEEEEe--cchHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVEAILQVYSTREHSRILVCA--ASNSAADHM 464 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~~i~qll~~~~~~rILv~a--pSN~Aad~l 464 (806)
.+..+-.|+||||+.+..+..+. .+.+||++= +.+.+...+
T Consensus 31 ~v~s~kGGvGKTT~a~~LA~~la---~g~~VlliD~D~~~~~~~~~ 73 (267)
T 3k9g_A 31 TIASIKGGVGKSTSAIILATLLS---KNNKVLLIDMDTQASITSYF 73 (267)
T ss_dssp EECCSSSSSCHHHHHHHHHHHHT---TTSCEEEEEECTTCHHHHHT
T ss_pred EEEeCCCCchHHHHHHHHHHHHH---CCCCEEEEECCCCCCHHHHh
Confidence 34567889999999888877665 357887753 444444444
No 493
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=66.79 E-value=3.3 Score=45.21 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHhC-----CCC-C--CEEEEcCCCCChHHHHHHHHHHHHHh----CCCCeEEEEec
Q 038509 401 LNEEQTRSVEIILGC-----KGA-P--PYVIYGPPGTGKTMTLVEAILQVYST----REHSRILVCAA 456 (806)
Q Consensus 401 LN~eQ~~AV~~il~~-----~~~-~--~~lI~GPPGTGKT~tlv~~i~qll~~----~~~~rILv~ap 456 (806)
++.+|...+...+.. ... + ..+..|-.|+||||+.+..+..+... ..+.+||++=.
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~ 151 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDL 151 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeC
Confidence 467777777666421 111 1 24555889999999999888777642 24678877543
No 494
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=66.76 E-value=2.3 Score=42.61 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=17.3
Q ss_pred CCEEEEcCCCCChHHHHHHHHHHHH
Q 038509 419 PPYVIYGPPGTGKTMTLVEAILQVY 443 (806)
Q Consensus 419 ~~~lI~GPPGTGKT~tlv~~i~qll 443 (806)
..+.|.||.|+||||. ...+.-++
T Consensus 31 e~~~iiG~nGsGKSTL-l~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTL-LYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHH-HHHHTTSS
T ss_pred CEEEEECCCCCCHHHH-HHHHhcCC
Confidence 3578999999999975 44444443
No 495
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=66.62 E-value=3.1 Score=38.87 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.8
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|+||+|||+.+.
T Consensus 9 i~v~G~~~~GKssl~~ 24 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTT 24 (178)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECcCCCCHHHHHH
Confidence 6899999999998654
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=66.43 E-value=3.2 Score=38.16 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.3
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+..
T Consensus 3 i~~~G~~~~GKssl~~~ 19 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYK 19 (164)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 497
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=66.31 E-value=2.9 Score=39.57 Aligned_cols=17 Identities=18% Similarity=0.378 Sum_probs=14.3
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|++|+|||+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~ 20 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYR 20 (190)
T ss_dssp EEEEEBTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986543
No 498
>3jt0_A Lamin-B1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, HR5546A, LMNB1_human; 2.39A {Homo sapiens}
Probab=66.16 E-value=7.5 Score=36.11 Aligned_cols=70 Identities=24% Similarity=0.251 Sum_probs=39.1
Q ss_pred eeeeecCCCCCCeEEeeccCCCCCcceeeEecceeEEEEEEEecCCccEEEEEEEEeecCCCCceeEEecCCCCCCCCCC
Q 038509 32 SVLSYDPSGEGPVIISVPFPFVQGKPQSILVGETSKCSITIQNTTPEPVEVWGIRIYCSEPANSLTLSLMEPPSGKPDPQ 111 (806)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 111 (806)
+..+|..+.||+|.|..--+= |+ -|.|+|++.+.+.|-.+++.-......
T Consensus 16 ~~~s~~~SakG~V~I~Evd~~----------Gk----fV~L~N~s~~~~~LgGW~L~r~v~g~~---------------- 65 (144)
T 3jt0_A 16 VSISHSASATGNVCIEEIDVD----------GK----FIRLKNTSEQDQPMGGWEMIRKIGDTS---------------- 65 (144)
T ss_dssp ---------CCCEEEEEECTT----------SS----EEEEEECSSSCEECTTCEEEEEETTEE----------------
T ss_pred eeEEEecccCCCEEEEEECCC----------CC----EEEEEECCCCceecCCcEEEEEeCCCc----------------
Confidence 445788889999988753221 22 367899999999887766642111111
Q ss_pred Ccccccccccc-cCeeeCCCCeEEEEE
Q 038509 112 KDQGFLEGFSI-EDRVLQPLRTLTIWL 137 (806)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~g~~~~~~~ 137 (806)
..|.+ .+..|+||.+++||-
T Consensus 66 ------~~y~FP~~~~L~pg~~VtVwa 86 (144)
T 3jt0_A 66 ------VSYKYTSRYVLKAGQTVTIWA 86 (144)
T ss_dssp ------EEEECCTTCEECTTCEEEEEE
T ss_pred ------eEEEcCCCcEECCCCEEEEEE
Confidence 01344 246899999999984
No 499
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=66.05 E-value=3.3 Score=38.34 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=14.0
Q ss_pred EEEEcCCCCChHHHHH
Q 038509 421 YVIYGPPGTGKTMTLV 436 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv 436 (806)
++|.|++|+|||+.+.
T Consensus 10 i~v~G~~~~GKssl~~ 25 (171)
T 1upt_A 10 ILILGLDGAGKTTILY 25 (171)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7999999999998654
No 500
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=66.00 E-value=3.2 Score=39.41 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=14.4
Q ss_pred EEEEcCCCCChHHHHHH
Q 038509 421 YVIYGPPGTGKTMTLVE 437 (806)
Q Consensus 421 ~lI~GPPGTGKT~tlv~ 437 (806)
++|.|.+|+|||+.+..
T Consensus 24 i~vvG~~~~GKSsli~~ 40 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQ 40 (190)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECcCCCCHHHHHHH
Confidence 68999999999986544
Done!