BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038510
(871 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 248 NSGCKVLLTARSQDVLSCKMDCQQNFFVD--VLNEK--EAWSLFRKMTGDCIENGELKSV 303
+S C++LLT R + V M + V+ + EK E SLF M + +L
Sbjct: 255 DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQ 309
Query: 304 ATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSY 363
A I+KEC G P+ +V + AL+ W+ L +L+ F+ I + Y++++ +
Sbjct: 310 AHSIIKECKGSPL-VVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAM 368
Query: 364 N---HLNREELKRTFLLIGYAFISCV-KDVLYHGMGLGLFQNINTSEEAWDRAHTLVDKL 419
+ + RE++K Y +S + KDV L + ++ T EE D V+
Sbjct: 369 SISVEMLREDIKDY-----YTDLSILQKDVKVPTKVLCILWDMET-EEVEDILQEFVN-- 420
Query: 420 KKSCLLVDGN-TSERFSMHDVVRD 442
KS L D N S R+ +HD+ D
Sbjct: 421 -KSLLFCDRNGKSFRYYLHDLQVD 443
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 24/204 (11%)
Query: 248 NSGCKVLLTARSQDVLSCKMDCQQNFFVD--VLNEK--EAWSLFRKMTGDCIENGELKSV 303
+S C++LLT R + V M + V+ + EK E SLF M + +L
Sbjct: 261 DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQ 315
Query: 304 ATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSY 363
A I+KEC G P+ +V + AL+ W+ L +L+ F+ I + Y++++ +
Sbjct: 316 AHSIIKECKGSPL-VVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAM 374
Query: 364 N---HLNREELKRTFLLIGYAFISCV-KDVLYHGMGLGLFQNINTSEEAWDRAHTLVDKL 419
+ + RE++K Y +S + KDV L + ++ T EE D V+
Sbjct: 375 SISVEMLREDIKDY-----YTDLSILQKDVKVPTKVLCILWDMET-EEVEDILQEFVN-- 426
Query: 420 KKSCLLVDGN-TSERFSMHDVVRD 442
KS L D N S R+ +HD+ D
Sbjct: 427 -KSLLFCDRNGKSFRYYLHDLQVD 449
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 13/132 (9%)
Query: 251 CKVLLTARSQDVLSCKMDCQQNFFVD--VLNEK--EAWSLFRKMTGDCIENGELKSVATE 306
C++LLT R + V M + V+ + EK E SLF M + +L + A
Sbjct: 258 CQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKE-----DLPAEAHS 312
Query: 307 IVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYN-- 364
I+KEC G P+ +V + AL+ W L +L+ F+ I + Y++++ + +
Sbjct: 313 IIKECKGSPL-VVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSIS 371
Query: 365 -HLNREELKRTF 375
+ RE++K +
Sbjct: 372 VEMLREDIKDYY 383
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 559 AIIGDLKKLEILSLRGSDVEKL-VGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEE 617
I +LK LE L + + ++ L +G QL L L L + +LK +PP V SL++L
Sbjct: 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTY 137
Query: 618 LYIGESPIQ 626
L +G + +Q
Sbjct: 138 LSLGYNELQ 146
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII- 82
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
+ +G L +D DPI+ GF ++F LK N A +C N+
Sbjct: 83 ------SMVVGQLKADEDPIM-GFHQEFLLKNINDAWVCTND 117
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 251 CKVLLTARSQDVLSCKMDCQQNFFVD--VLNEK--EAWSLFRKMTGDCIENGELKSVATE 306
C++LLT + V M + V+ + EK E SLF M + +L + A
Sbjct: 265 CQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKE-----DLPAEAHS 319
Query: 307 IVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYN-- 364
I+KEC G P+ +V + AL+ W L +L+ F+ I + Y++++ + +
Sbjct: 320 IIKECKGSPL-VVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSIS 378
Query: 365 -HLNREELKRTF 375
+ RE++K +
Sbjct: 379 VEMLREDIKDYY 390
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 564 LKKLEILSLRGSDVEKL-VGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622
L LE+L L + + ++ VG L L L+L + L VIP LS+L EL++
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRN 156
Query: 623 SPIQ 626
+PI+
Sbjct: 157 NPIE 160
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 32.7 bits (73), Expect = 0.84, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIIS 83
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
++ +G L +D DPI+ GF + F LK N A +C N+
Sbjct: 84 EV-------VGQLKADEDPIM-GFHQMFLLKNINDAWVCTND 117
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQASITAQDHQPTPDSCII- 82
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
+ +G L +D DPI+ GF + F LK N A +C N+
Sbjct: 83 ------SMVVGQLKADEDPIM-GFHQMFLLKNINDAWVCTND 117
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 564 LKKLEILSLRGSDVEKL-VGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622
L+ LEIL L + V K+ VG L L L+L L +P LS+L EL++
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRN 116
Query: 623 SPIQ 626
+PI+
Sbjct: 117 NPIE 120
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 564 LKKLEILSLRGSDVEKL-VGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622
L+ LEIL L + V K+ VG L L L+L L +P LS+L EL++
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD-NRLTTVPTQAFEYLSKLRELWLRN 116
Query: 623 SPIQ 626
+PI+
Sbjct: 117 NPIE 120
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII- 82
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
+ +G L +D DPI+ GF + F LK N A +C N+
Sbjct: 83 ------SMVVGQLKADEDPIM-GFHQMFLLKNINDAWVCTND 117
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 26 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII- 81
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
+ +G L +D DPI+ GF + F LK N A +C N+
Sbjct: 82 ------SMVVGQLKADEDPIM-GFHQMFLLKNINDAWVCTND 116
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII- 82
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
+ +G L +D DPI+ GF + F LK N A +C N+
Sbjct: 83 ------SMVVGQLKADEDPIM-GFHQMFLLKNINDAWVCTND 117
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII- 82
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
+ +G L +D DPI+ GF + F LK N A +C N+
Sbjct: 83 ------SMVVGQLKADEDPIM-GFHQMFLLKNINDAWVCTND 117
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDSERR 638
+L++LDLS+C E++ I SLS L L + +PIQ G GL S ++
Sbjct: 53 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDSERR 638
+L++LDLS+C E++ I SLS L L + +PIQ G GL S ++
Sbjct: 77 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDS-------ERR 638
+L++LDLS+C E++ I SLS L L + +PIQ G GL S E
Sbjct: 53 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111
Query: 639 NASLHE--LNHLSKLTSLEI---LIQDEK 662
ASL + HL L L + LIQ K
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFK 140
>pdb|3PNN|A Chain A, The Crystal Structure Of A Glycosyltransferase From
Porphyromonas Gingivalis W83
Length = 303
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 428 GNTSERFSMHDVVRDAAISIASGDQHVFVVESEVAPQIIWPDKEKLKVCTAISLIYSNIS 487
G+T +S++D +R + +H F E E +I+ K + + L++ +
Sbjct: 32 GDTIXDYSVYDAIRAGFGRLVFVIRHSF--EKEFREKIL----TKYEGRIPVELVFQELD 85
Query: 488 ELPQGFECPQ 497
LP+GF CP+
Sbjct: 86 RLPEGFSCPE 95
>pdb|1MKF|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1MKF|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus 68
pdb|1ML0|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The P8a Variant Of
Cc-Chemokine Mcp-1
pdb|2NYZ|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NYZ|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The C- Chemokine Xcl1
pdb|2NZ1|A Chain A, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|B Chain B, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
pdb|2NZ1|X Chain X, Viral Chemokine Binding Protein M3 From Murine
Gammaherpesvirus68 In Complex With The Cc-Chemokine
Ccl2MCP-1
Length = 382
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 53 KVDDSRIK-GDGIQQHVEEWLFAANKEINEVETIIEDKENSNNRCLKGLC 101
VD S+IK GD IQ H L A E+ E I++D + N L+GLC
Sbjct: 20 SVDLSQIKRGDEIQAHC---LTPAETEVTECAGILKDVLSKNLHELQGLC 66
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDSERRNASLHEL 645
+L++LDLS+C E++ I SLS L L + +PIQ G GL S ++ +L
Sbjct: 55 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE-- 111
Query: 646 NHLSKLTSLE 655
+ L SLE
Sbjct: 112 ---TNLASLE 118
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 559 AIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPP 606
A I +L+ L+ L +R S + L + L +L LDL C L+ PP
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 564 LKKLEILSLRGSDVEKL-VGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622
L+ LEIL L + + + +G L L L+L L IP LS+L+EL++
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRN 145
Query: 623 SPIQ 626
+PI+
Sbjct: 146 NPIE 149
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W +G + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---KGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCII- 82
Query: 672 KILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712
+ +G L +D DPI+ GF + F LK N A +C N+
Sbjct: 83 ------SMVVGQLKADEDPIM-GFHQMFLLKNINDAWVCTND 117
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 146 STQDFMHFESRKSTFKEILDALSNRD--FNMIGVYGMGGIGKTTLVKEVGRQAKE 198
+ ++F+ E + ++ + +AL N +N I +YG G GKT L++ G +AK+
Sbjct: 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK 63
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDSERR 638
+L++LDLS+C E++ I SLS L L + +PIQ G GL S ++
Sbjct: 54 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 105
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDSERR 638
+L++LDLS+C E++ I SLS L L + +PIQ G GL S ++
Sbjct: 53 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 146 STQDFMHFESRKSTFKEILDALSNRD--FNMIGVYGMGGIGKTTLVKEVGRQAKE 198
+ ++F+ E + ++ + +AL N +N I +YG G GKT L++ G +AK+
Sbjct: 8 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK 62
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 146 STQDFMHFESRKSTFKEILDALSNRD--FNMIGVYGMGGIGKTTLVKEVGRQAKE 198
+ ++F+ E + ++ + +AL N +N I +YG G GKT L++ G +AK+
Sbjct: 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK 63
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDS-------ERR 638
+L++LDLS+C E++ I SLS L L + +PIQ G GL S E
Sbjct: 54 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 112
Query: 639 NASLH--ELNHLSKLTSLEI---LIQDEK 662
ASL + HL L L + LIQ K
Sbjct: 113 LASLENFPIGHLKTLKELNVAHNLIQSFK 141
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 589 QLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ---WGTVEGLDS-------ERR 638
+L++LDLS+C E++ I SLS L L + +PIQ G GL S E
Sbjct: 55 ELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 113
Query: 639 NASLH--ELNHLSKLTSLEI---LIQDEK 662
ASL + HL L L + LIQ K
Sbjct: 114 LASLENFPIGHLKTLKELNVAHNLIQSFK 142
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 30.0 bits (66), Expect = 6.5, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 613 SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEKTIPSDLLFF 671
++L +YI S + W EG + + A + +L+ L + I QD + P +
Sbjct: 27 TQLGAIYIDASCLTW---EGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIIS 83
Query: 672 KILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNE 712
++ + + +++PI+ GF + F LK N A +C N+
Sbjct: 84 MVVGQLKA------NENPIM-GFHQMFLLKNINDAWVCTND 117
>pdb|4G3H|A Chain A, Crystal Structure Of Helicobacter Pylori Arginase
pdb|4G3H|B Chain B, Crystal Structure Of Helicobacter Pylori Arginase
pdb|4G3H|C Chain C, Crystal Structure Of Helicobacter Pylori Arginase
pdb|4G3H|D Chain D, Crystal Structure Of Helicobacter Pylori Arginase
Length = 330
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 22/106 (20%)
Query: 392 HGMGLGL--------FQNINTSEE-AWDRAHTL-VDK----LKKSCLLVDGNTSERFSMH 437
HGM LG+ F ++ SEE AW + +L ++K + CL+ G S S
Sbjct: 133 HGMPLGMVLNRVRSGFNRMSESEEKAWQKLCSLGLEKGGLEIDPKCLVYFGVRSTEQSER 192
Query: 438 DVVRDAAISIASGDQHVFVVESEVAPQIIWPDKEKLKVCTAISLIY 483
DV+R+ I + S D E +++ KE LK A+ +IY
Sbjct: 193 DVIRELQIPLFSVD-----AIRENMQEVVQKTKESLK---AVDIIY 230
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 471 EKLKVCTAISLIYSNISELPQGF--ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVL 525
+KL T + L Y+ + LP+G + QLK R+ + +PD F +T L+ +
Sbjct: 154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,593,492
Number of Sequences: 62578
Number of extensions: 938232
Number of successful extensions: 2387
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2352
Number of HSP's gapped (non-prelim): 75
length of query: 871
length of database: 14,973,337
effective HSP length: 107
effective length of query: 764
effective length of database: 8,277,491
effective search space: 6324003124
effective search space used: 6324003124
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)