Query 038510
Match_columns 871
No_of_seqs 432 out of 4328
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.2E-83 1.1E-87 747.9 39.5 764 29-845 19-864 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.4E-62 9.6E-67 604.8 48.4 635 147-845 180-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.6E-39 3.4E-44 346.8 13.4 243 156-401 1-284 (287)
4 PLN00113 leucine-rich repeat r 99.9 4.2E-22 9.1E-27 248.6 20.9 148 473-624 92-247 (968)
5 PLN00113 leucine-rich repeat r 99.9 6.8E-22 1.5E-26 246.7 20.8 148 475-625 70-224 (968)
6 PLN03210 Resistant to P. syrin 99.8 2E-19 4.4E-24 224.4 22.9 357 474-869 532-909 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 1.3E-22 2.9E-27 215.1 -5.7 319 471-816 52-376 (1255)
8 KOG4194 Membrane glycoprotein 99.8 1E-20 2.3E-25 199.9 4.7 339 473-835 101-446 (873)
9 KOG0444 Cytoskeletal regulator 99.8 9.4E-22 2E-26 208.7 -5.3 342 469-841 27-375 (1255)
10 KOG4194 Membrane glycoprotein 99.8 3E-20 6.6E-25 196.5 4.1 339 473-839 77-427 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 5E-19 1.1E-23 179.6 -5.9 147 476-625 70-218 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 3.8E-18 8.3E-23 173.2 -6.8 259 476-756 47-308 (565)
13 KOG4658 Apoptotic ATPase [Sign 99.6 1.2E-15 2.7E-20 180.6 8.1 319 486-847 513-848 (889)
14 KOG0618 Serine/threonine phosp 99.6 5.5E-17 1.2E-21 181.4 -3.5 364 476-871 23-483 (1081)
15 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.3E-21 143.3 -4.3 168 485-668 22-192 (264)
16 KOG0618 Serine/threonine phosp 99.5 2.3E-16 5.1E-21 176.4 -4.2 108 717-840 381-488 (1081)
17 KOG0617 Ras suppressor protein 99.4 2.8E-15 6.2E-20 135.1 -4.1 154 473-629 32-189 (264)
18 PRK15387 E3 ubiquitin-protein 99.4 4.4E-12 9.5E-17 147.4 16.0 252 477-813 204-456 (788)
19 PRK15370 E3 ubiquitin-protein 99.4 2.9E-12 6.2E-17 149.9 12.1 217 477-729 181-398 (754)
20 PRK15387 E3 ubiquitin-protein 99.3 2.5E-11 5.4E-16 141.2 17.8 173 472-682 220-392 (788)
21 PRK15370 E3 ubiquitin-protein 99.3 9.7E-12 2.1E-16 145.6 9.9 226 472-730 197-426 (754)
22 PRK04841 transcriptional regul 99.2 1.5E-09 3.2E-14 135.3 21.8 269 150-448 13-332 (903)
23 KOG4237 Extracellular matrix p 99.1 8.7E-12 1.9E-16 127.5 -3.4 139 484-624 56-199 (498)
24 TIGR00635 ruvB Holliday juncti 99.0 7.2E-09 1.6E-13 111.3 16.3 253 150-428 3-289 (305)
25 KOG0532 Leucine-rich repeat (L 99.0 3.6E-11 7.9E-16 128.5 -3.1 190 475-682 76-270 (722)
26 PRK00080 ruvB Holliday junctio 99.0 5.5E-09 1.2E-13 112.9 13.5 254 148-428 22-310 (328)
27 PF01637 Arch_ATPase: Archaeal 98.9 5.1E-09 1.1E-13 107.9 10.7 167 153-320 1-233 (234)
28 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 4E-14 103.0 5.4 106 518-625 17-125 (175)
29 TIGR03015 pepcterm_ATPase puta 98.9 7.2E-08 1.6E-12 101.6 17.2 156 170-325 41-242 (269)
30 PF14580 LRR_9: Leucine-rich r 98.9 2.3E-09 5E-14 102.4 5.0 131 487-621 10-148 (175)
31 COG2256 MGS1 ATPase related to 98.8 2.6E-08 5.7E-13 103.5 12.4 164 148-316 21-207 (436)
32 KOG4237 Extracellular matrix p 98.8 2.2E-10 4.8E-15 117.4 -3.7 129 471-599 64-199 (498)
33 cd00116 LRR_RI Leucine-rich re 98.8 1.3E-09 2.9E-14 118.1 1.2 63 516-578 19-94 (319)
34 KOG0532 Leucine-rich repeat (L 98.8 3.6E-10 7.8E-15 121.0 -3.4 188 478-683 54-245 (722)
35 PRK13342 recombination factor 98.8 5.5E-08 1.2E-12 108.4 13.2 170 149-323 10-198 (413)
36 COG3899 Predicted ATPase [Gene 98.8 2E-07 4.4E-12 111.9 18.5 275 153-447 2-385 (849)
37 PF05729 NACHT: NACHT domain 98.8 5.2E-08 1.1E-12 94.4 11.1 119 173-291 1-163 (166)
38 KOG1259 Nischarin, modulator o 98.7 1.6E-09 3.5E-14 106.9 -0.4 134 519-666 283-416 (490)
39 cd00116 LRR_RI Leucine-rich re 98.7 3.4E-09 7.3E-14 115.0 1.8 158 494-661 21-205 (319)
40 PRK00411 cdc6 cell division co 98.7 6.5E-07 1.4E-11 100.0 19.1 210 151-377 30-303 (394)
41 COG2909 MalT ATP-dependent tra 98.7 4.8E-07 1E-11 102.7 17.0 268 150-450 18-340 (894)
42 KOG1259 Nischarin, modulator o 98.7 2.7E-09 5.9E-14 105.3 -1.0 125 472-598 282-409 (490)
43 PRK06893 DNA replication initi 98.6 3.3E-07 7.1E-12 93.4 13.5 147 170-320 37-202 (229)
44 PF05496 RuvB_N: Holliday junc 98.6 5.3E-07 1.1E-11 87.9 13.2 168 147-319 20-219 (233)
45 KOG4341 F-box protein containi 98.6 2.8E-09 6.2E-14 110.4 -3.0 125 716-845 317-443 (483)
46 KOG3207 Beta-tubulin folding c 98.5 4.8E-08 1E-12 102.0 2.2 236 541-838 119-364 (505)
47 COG4886 Leucine-rich repeat (L 98.4 1.6E-07 3.4E-12 105.1 5.3 102 520-623 116-219 (394)
48 PF13173 AAA_14: AAA domain 98.4 5.7E-07 1.2E-11 82.6 8.0 111 172-283 2-127 (128)
49 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.6E-06 5.6E-11 87.2 12.8 165 155-322 21-202 (226)
50 PRK06645 DNA polymerase III su 98.4 3.6E-06 7.7E-11 94.6 14.7 170 148-318 18-226 (507)
51 COG4886 Leucine-rich repeat (L 98.4 2.2E-07 4.7E-12 104.0 4.7 174 493-683 113-288 (394)
52 PRK07003 DNA polymerase III su 98.4 3.4E-06 7.4E-11 96.3 13.9 175 148-323 13-223 (830)
53 KOG3207 Beta-tubulin folding c 98.4 5.2E-08 1.1E-12 101.8 -0.4 202 472-680 119-334 (505)
54 PRK14961 DNA polymerase III su 98.4 6.2E-06 1.4E-10 90.2 15.6 170 149-319 14-218 (363)
55 PRK14956 DNA polymerase III su 98.4 3.8E-06 8.2E-11 92.4 13.7 169 148-317 15-218 (484)
56 PRK14963 DNA polymerase III su 98.4 6.3E-06 1.4E-10 93.1 15.9 169 149-318 12-214 (504)
57 PRK14949 DNA polymerase III su 98.4 3.6E-06 7.7E-11 98.1 14.0 173 148-321 13-220 (944)
58 PLN03025 replication factor C 98.4 3.8E-06 8.2E-11 90.4 13.4 169 148-317 10-196 (319)
59 PRK12323 DNA polymerase III su 98.4 3.4E-06 7.3E-11 95.1 13.2 173 148-321 13-225 (700)
60 KOG4341 F-box protein containi 98.4 3.3E-08 7E-13 102.7 -2.8 282 543-871 138-433 (483)
61 COG3903 Predicted ATPase [Gene 98.4 5.9E-07 1.3E-11 94.4 6.3 263 171-450 13-316 (414)
62 PRK13341 recombination factor 98.3 4E-06 8.6E-11 98.3 13.6 163 148-315 25-211 (725)
63 PRK12402 replication factor C 98.3 8.9E-06 1.9E-10 88.9 15.6 169 150-319 14-224 (337)
64 PRK04195 replication factor C 98.3 1.7E-05 3.7E-10 90.3 18.2 176 148-326 11-207 (482)
65 TIGR02928 orc1/cdc6 family rep 98.3 1.2E-05 2.7E-10 88.8 16.5 168 151-318 15-243 (365)
66 KOG2028 ATPase related to the 98.3 2E-06 4.4E-11 87.7 9.0 161 152-315 139-330 (554)
67 PRK09087 hypothetical protein; 98.3 1.7E-05 3.7E-10 80.2 15.8 161 171-339 43-221 (226)
68 PRK14960 DNA polymerase III su 98.3 8.2E-06 1.8E-10 92.3 14.1 172 148-320 12-218 (702)
69 TIGR01242 26Sp45 26S proteasom 98.3 1.6E-05 3.5E-10 87.3 16.4 163 149-315 120-328 (364)
70 PRK05564 DNA polymerase III su 98.3 1.1E-05 2.3E-10 86.8 14.0 164 151-319 4-188 (313)
71 PRK14962 DNA polymerase III su 98.3 1.5E-05 3.4E-10 89.2 15.3 177 148-325 11-223 (472)
72 PLN03150 hypothetical protein; 98.3 1.9E-06 4.2E-11 101.0 8.5 103 521-624 419-526 (623)
73 PRK14951 DNA polymerase III su 98.3 1.5E-05 3.3E-10 91.3 15.3 172 148-320 13-224 (618)
74 PRK14964 DNA polymerase III su 98.2 1.1E-05 2.4E-10 89.8 13.8 170 148-318 10-214 (491)
75 PRK07471 DNA polymerase III su 98.2 2.1E-05 4.6E-10 85.2 15.3 170 147-321 15-238 (365)
76 PRK07994 DNA polymerase III su 98.2 1.3E-05 2.9E-10 92.0 14.2 173 148-321 13-220 (647)
77 PRK09112 DNA polymerase III su 98.2 3.6E-05 7.8E-10 83.0 16.3 172 147-321 19-240 (351)
78 PRK14955 DNA polymerase III su 98.2 1.3E-05 2.8E-10 88.8 13.2 169 149-318 14-225 (397)
79 PRK14957 DNA polymerase III su 98.2 1.8E-05 3.8E-10 89.6 14.3 175 148-323 13-223 (546)
80 PRK08691 DNA polymerase III su 98.2 1.6E-05 3.4E-10 91.0 13.4 172 148-320 13-219 (709)
81 TIGR00678 holB DNA polymerase 98.2 2.2E-05 4.7E-10 77.7 12.8 149 162-317 3-187 (188)
82 PRK05896 DNA polymerase III su 98.2 2.1E-05 4.5E-10 89.1 14.0 175 148-323 13-223 (605)
83 PRK08084 DNA replication initi 98.2 2.8E-05 6E-10 79.6 13.8 160 157-319 30-207 (235)
84 PRK14958 DNA polymerase III su 98.2 1.6E-05 3.6E-10 90.0 13.1 171 148-319 13-218 (509)
85 PF13855 LRR_8: Leucine rich r 98.2 1.7E-06 3.6E-11 67.7 3.5 56 521-576 2-60 (61)
86 TIGR02903 spore_lon_C ATP-depe 98.1 3.9E-05 8.4E-10 89.4 16.1 175 148-324 151-398 (615)
87 PRK00440 rfc replication facto 98.1 4.4E-05 9.6E-10 82.7 15.6 168 150-318 16-200 (319)
88 PRK08727 hypothetical protein; 98.1 2.9E-05 6.3E-10 79.3 13.3 165 151-318 19-201 (233)
89 PF13855 LRR_8: Leucine rich r 98.1 2.4E-06 5.2E-11 66.8 4.2 55 544-598 2-59 (61)
90 PRK07940 DNA polymerase III su 98.1 4.8E-05 1E-09 83.2 15.5 165 151-321 5-213 (394)
91 PRK14954 DNA polymerase III su 98.1 3.7E-05 8E-10 88.6 15.0 172 149-321 14-229 (620)
92 TIGR02397 dnaX_nterm DNA polym 98.1 4.8E-05 1E-09 83.7 15.5 172 149-321 12-218 (355)
93 PLN03150 hypothetical protein; 98.1 6.3E-06 1.4E-10 96.7 8.5 107 497-604 419-531 (623)
94 cd00009 AAA The AAA+ (ATPases 98.1 1.3E-05 2.8E-10 75.7 9.1 107 155-261 2-131 (151)
95 COG2255 RuvB Holliday junction 98.1 0.00022 4.9E-09 71.2 17.5 171 147-320 22-222 (332)
96 KOG0989 Replication factor C, 98.1 2E-05 4.3E-10 79.5 10.2 168 147-315 32-224 (346)
97 PRK14970 DNA polymerase III su 98.0 0.00011 2.3E-09 81.2 15.8 167 149-316 15-204 (367)
98 PRK09111 DNA polymerase III su 98.0 5.7E-05 1.2E-09 86.9 14.1 172 148-320 21-232 (598)
99 PRK08903 DnaA regulatory inact 98.0 9.4E-05 2E-09 75.6 14.3 164 158-325 27-203 (227)
100 PRK07764 DNA polymerase III su 98.0 6.3E-05 1.4E-09 89.5 14.7 169 149-318 13-218 (824)
101 PRK14952 DNA polymerase III su 98.0 7.7E-05 1.7E-09 85.4 14.7 177 148-325 10-224 (584)
102 PRK03992 proteasome-activating 98.0 8.2E-05 1.8E-09 82.1 14.5 190 150-343 130-375 (389)
103 PRK14959 DNA polymerase III su 98.0 7.4E-05 1.6E-09 85.1 14.3 177 149-326 14-226 (624)
104 PRK14969 DNA polymerase III su 98.0 6.3E-05 1.4E-09 85.9 13.6 173 148-321 13-221 (527)
105 PRK14971 DNA polymerase III su 98.0 0.00011 2.4E-09 85.3 15.7 168 150-318 16-219 (614)
106 PTZ00112 origin recognition co 98.0 0.00014 3.1E-09 83.8 15.3 175 151-326 755-987 (1164)
107 KOG2120 SCF ubiquitin ligase, 98.0 3.7E-07 7.9E-12 90.7 -4.6 81 544-624 186-271 (419)
108 PRK07133 DNA polymerase III su 98.0 0.00012 2.5E-09 84.9 14.9 172 149-321 16-220 (725)
109 KOG0531 Protein phosphatase 1, 97.9 1E-06 2.2E-11 98.7 -2.0 127 495-625 71-198 (414)
110 PRK08451 DNA polymerase III su 97.9 0.00011 2.4E-09 82.8 14.1 173 148-321 11-218 (535)
111 PHA02544 44 clamp loader, smal 97.9 7.3E-05 1.6E-09 80.7 12.2 142 148-289 18-171 (316)
112 TIGR03345 VI_ClpV1 type VI sec 97.9 8.4E-05 1.8E-09 89.7 13.7 164 150-314 186-389 (852)
113 PRK06305 DNA polymerase III su 97.9 0.00028 6.1E-09 79.1 15.5 173 149-322 15-224 (451)
114 PRK05642 DNA replication initi 97.8 0.00013 2.8E-09 74.5 11.6 145 173-320 46-207 (234)
115 PRK06647 DNA polymerase III su 97.8 0.00023 4.9E-09 81.7 14.6 172 148-320 13-219 (563)
116 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.5E-10 56.8 3.3 37 521-557 2-38 (44)
117 KOG2120 SCF ubiquitin ligase, 97.8 5.4E-07 1.2E-11 89.6 -5.9 186 588-813 185-374 (419)
118 KOG0531 Protein phosphatase 1, 97.8 2.5E-06 5.4E-11 95.6 -1.5 121 476-598 74-196 (414)
119 KOG1909 Ran GTPase-activating 97.8 2.7E-06 5.8E-11 86.9 -1.3 238 518-785 28-308 (382)
120 PRK05563 DNA polymerase III su 97.8 0.00029 6.2E-09 81.2 14.9 171 148-319 13-218 (559)
121 TIGR02639 ClpA ATP-dependent C 97.8 8.2E-05 1.8E-09 89.2 10.9 141 150-291 181-358 (731)
122 CHL00095 clpC Clp protease ATP 97.8 0.00014 3E-09 88.3 12.7 139 151-290 179-353 (821)
123 KOG3665 ZYG-1-like serine/thre 97.8 8.9E-06 1.9E-10 95.1 2.4 124 474-598 122-260 (699)
124 PRK14950 DNA polymerase III su 97.8 0.00034 7.4E-09 81.4 15.3 172 149-321 14-221 (585)
125 TIGR02881 spore_V_K stage V sp 97.8 0.00024 5.1E-09 74.2 12.6 141 152-292 7-192 (261)
126 PRK14953 DNA polymerase III su 97.8 0.00045 9.9E-09 77.9 15.2 172 149-321 14-220 (486)
127 PRK14965 DNA polymerase III su 97.7 0.0003 6.5E-09 81.5 13.3 176 148-324 13-224 (576)
128 KOG1859 Leucine-rich repeat pr 97.7 6.3E-07 1.4E-11 99.1 -8.2 173 473-662 108-292 (1096)
129 PTZ00454 26S protease regulato 97.7 0.00073 1.6E-08 74.3 15.4 163 149-315 143-351 (398)
130 PF05673 DUF815: Protein of un 97.7 0.0018 3.9E-08 64.6 16.4 96 148-244 24-131 (249)
131 PRK06620 hypothetical protein; 97.7 0.00016 3.4E-09 72.6 9.3 133 173-316 45-184 (214)
132 COG1373 Predicted ATPase (AAA+ 97.7 0.0003 6.6E-09 77.6 12.3 131 155-287 21-163 (398)
133 PRK14948 DNA polymerase III su 97.7 0.00064 1.4E-08 79.0 15.3 172 149-321 14-222 (620)
134 CHL00181 cbbX CbbX; Provisiona 97.7 0.00065 1.4E-08 71.4 13.7 120 173-292 60-210 (287)
135 PF12799 LRR_4: Leucine Rich r 97.6 6.6E-05 1.4E-09 53.7 4.0 33 566-598 2-34 (44)
136 PTZ00361 26 proteosome regulat 97.6 0.00064 1.4E-08 75.2 13.6 186 149-340 181-424 (438)
137 PF00004 AAA: ATPase family as 97.6 0.00024 5.3E-09 65.5 8.6 58 175-234 1-70 (132)
138 TIGR02880 cbbX_cfxQ probable R 97.6 0.00075 1.6E-08 71.0 12.9 119 174-292 60-209 (284)
139 KOG3665 ZYG-1-like serine/thre 97.6 2.7E-05 5.8E-10 91.1 2.0 129 496-625 122-262 (699)
140 TIGR03346 chaperone_ClpB ATP-d 97.6 0.00063 1.4E-08 82.9 13.7 141 150-291 172-349 (852)
141 PRK10865 protein disaggregatio 97.6 0.00044 9.6E-09 83.9 12.2 141 150-291 177-354 (857)
142 TIGR01241 FtsH_fam ATP-depende 97.6 0.001 2.3E-08 76.2 14.5 163 149-315 53-260 (495)
143 PF00308 Bac_DnaA: Bacterial d 97.5 0.0003 6.4E-09 71.0 8.5 145 172-319 34-206 (219)
144 TIGR03689 pup_AAA proteasome A 97.5 0.0012 2.5E-08 74.3 13.8 144 150-293 181-380 (512)
145 COG1222 RPT1 ATP-dependent 26S 97.5 0.0039 8.4E-08 64.8 16.1 188 147-340 147-392 (406)
146 KOG2982 Uncharacterized conser 97.5 4.4E-05 9.6E-10 76.3 2.1 70 716-791 196-265 (418)
147 KOG1859 Leucine-rich repeat pr 97.5 3.3E-06 7.2E-11 93.6 -6.9 124 472-598 162-289 (1096)
148 PRK05707 DNA polymerase III su 97.5 0.0022 4.7E-08 68.7 14.4 145 172-321 22-203 (328)
149 CHL00176 ftsH cell division pr 97.4 0.0014 3E-08 76.3 13.6 160 151-314 183-387 (638)
150 KOG1644 U2-associated snRNP A' 97.4 0.00026 5.7E-09 67.2 6.2 63 516-578 60-126 (233)
151 PRK11034 clpA ATP-dependent Cl 97.4 0.00038 8.3E-09 82.4 8.8 140 151-291 186-362 (758)
152 PRK15386 type III secretion pr 97.4 0.00033 7.1E-09 75.6 7.5 71 494-575 50-122 (426)
153 KOG0991 Replication factor C, 97.4 0.0012 2.6E-08 63.9 10.3 85 150-234 26-125 (333)
154 PRK10536 hypothetical protein; 97.4 0.0014 3.1E-08 66.1 11.4 47 148-196 52-98 (262)
155 KOG4579 Leucine-rich repeat (L 97.4 8.5E-06 1.8E-10 71.9 -3.9 107 477-583 30-141 (177)
156 PF13191 AAA_16: AAA ATPase do 97.4 0.00018 3.8E-09 71.0 4.8 48 152-199 1-51 (185)
157 KOG2004 Mitochondrial ATP-depe 97.4 0.0017 3.7E-08 72.9 12.5 82 152-234 412-517 (906)
158 PRK07399 DNA polymerase III su 97.4 0.0042 9.1E-08 66.2 15.2 167 151-321 4-221 (314)
159 KOG0731 AAA+-type ATPase conta 97.4 0.0028 6.1E-08 73.1 14.3 167 150-319 310-522 (774)
160 PTZ00202 tuzin; Provisional 97.2 0.0014 3.1E-08 70.3 9.8 51 147-197 258-311 (550)
161 PRK14087 dnaA chromosomal repl 97.2 0.0025 5.5E-08 71.5 12.3 148 173-322 142-320 (450)
162 PF14516 AAA_35: AAA-like doma 97.2 0.0087 1.9E-07 64.6 16.0 172 150-328 10-246 (331)
163 TIGR00602 rad24 checkpoint pro 97.2 0.0035 7.5E-08 72.5 13.5 170 147-316 80-318 (637)
164 KOG1909 Ran GTPase-activating 97.2 9.4E-05 2E-09 75.9 0.7 80 519-598 156-251 (382)
165 TIGR00362 DnaA chromosomal rep 97.2 0.005 1.1E-07 68.9 14.5 165 173-340 137-337 (405)
166 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0027 5.9E-08 71.4 12.2 166 150-315 227-429 (489)
167 KOG1644 U2-associated snRNP A' 97.2 0.00043 9.3E-09 65.7 4.8 101 475-575 43-150 (233)
168 COG1223 Predicted ATPase (AAA+ 97.2 0.0027 5.8E-08 62.6 10.3 161 151-315 121-319 (368)
169 PRK09376 rho transcription ter 97.2 0.00072 1.6E-08 72.2 7.0 41 162-203 158-199 (416)
170 PRK15386 type III secretion pr 97.2 0.0012 2.6E-08 71.3 8.7 63 540-606 49-112 (426)
171 COG1474 CDC6 Cdc6-related prot 97.2 0.014 3E-07 63.4 16.8 172 153-325 19-242 (366)
172 PF13401 AAA_22: AAA domain; P 97.2 0.0012 2.7E-08 60.7 7.5 87 171-259 3-125 (131)
173 PRK08058 DNA polymerase III su 97.1 0.006 1.3E-07 65.8 13.4 138 153-290 7-181 (329)
174 TIGR00763 lon ATP-dependent pr 97.1 0.0044 9.4E-08 75.0 13.6 47 152-198 321-373 (775)
175 cd01128 rho_factor Transcripti 97.1 0.00081 1.8E-08 68.8 6.3 33 170-203 14-46 (249)
176 COG5238 RNA1 Ran GTPase-activa 97.1 0.00016 3.4E-09 71.5 0.7 89 518-607 28-138 (388)
177 COG2812 DnaX DNA polymerase II 97.1 0.0034 7.3E-08 70.1 11.2 167 148-315 13-214 (515)
178 PRK00149 dnaA chromosomal repl 97.1 0.0043 9.3E-08 70.3 12.4 165 173-340 149-349 (450)
179 PRK14086 dnaA chromosomal repl 97.1 0.0039 8.4E-08 71.1 11.6 140 173-315 315-482 (617)
180 COG0466 Lon ATP-dependent Lon 97.1 0.0039 8.5E-08 70.5 11.3 137 153-291 325-508 (782)
181 PHA00729 NTP-binding motif con 97.1 0.0022 4.7E-08 63.8 8.4 114 162-291 7-140 (226)
182 PRK06871 DNA polymerase III su 97.0 0.015 3.2E-07 61.9 15.0 155 158-318 9-200 (325)
183 PRK08769 DNA polymerase III su 97.0 0.013 2.8E-07 62.3 14.4 158 157-321 10-208 (319)
184 KOG0734 AAA+-type ATPase conta 97.0 0.0014 3E-08 70.9 7.1 84 151-234 304-408 (752)
185 PRK10787 DNA-binding ATP-depen 97.0 0.0075 1.6E-07 72.3 14.0 138 152-291 323-506 (784)
186 KOG2982 Uncharacterized conser 97.0 8.5E-05 1.8E-09 74.3 -2.0 81 518-598 69-156 (418)
187 KOG2227 Pre-initiation complex 97.0 0.012 2.7E-07 63.3 13.6 177 149-325 148-376 (529)
188 PRK06090 DNA polymerase III su 97.0 0.026 5.6E-07 59.9 16.1 155 158-321 10-201 (319)
189 PRK08181 transposase; Validate 97.0 0.0046 1E-07 64.0 10.2 92 165-260 101-209 (269)
190 PRK14088 dnaA chromosomal repl 96.9 0.0083 1.8E-07 67.3 12.4 166 173-340 131-332 (440)
191 TIGR01243 CDC48 AAA family ATP 96.9 0.011 2.4E-07 71.3 14.4 161 151-315 453-657 (733)
192 PRK08118 topology modulation p 96.8 0.0022 4.9E-08 61.6 6.4 59 173-233 2-69 (167)
193 PF02562 PhoH: PhoH-like prote 96.8 0.0024 5.1E-08 62.8 6.4 47 155-203 4-50 (205)
194 smart00382 AAA ATPases associa 96.8 0.0035 7.5E-08 58.3 7.4 66 173-238 3-94 (148)
195 KOG2123 Uncharacterized conser 96.8 8.8E-05 1.9E-09 73.5 -3.6 79 521-600 20-100 (388)
196 PLN00020 ribulose bisphosphate 96.8 0.012 2.6E-07 62.3 11.7 155 170-334 146-352 (413)
197 KOG4579 Leucine-rich repeat (L 96.8 9.8E-05 2.1E-09 65.4 -3.0 101 521-623 28-133 (177)
198 TIGR01243 CDC48 AAA family ATP 96.8 0.01 2.2E-07 71.7 12.9 163 150-316 177-382 (733)
199 PF13177 DNA_pol3_delta2: DNA 96.8 0.0055 1.2E-07 58.6 8.6 125 155-279 1-162 (162)
200 PRK12422 chromosomal replicati 96.8 0.0067 1.5E-07 67.9 10.4 139 173-314 142-306 (445)
201 TIGR03345 VI_ClpV1 type VI sec 96.8 0.013 2.7E-07 71.2 13.3 84 151-234 566-680 (852)
202 KOG0733 Nuclear AAA ATPase (VC 96.8 0.028 6E-07 62.4 14.3 83 150-234 189-294 (802)
203 COG0542 clpA ATP-binding subun 96.7 0.0084 1.8E-07 69.9 10.5 142 150-291 169-346 (786)
204 PRK07993 DNA polymerase III su 96.7 0.037 8.1E-07 59.5 14.6 156 158-319 9-202 (334)
205 KOG0730 AAA+-type ATPase [Post 96.6 0.02 4.4E-07 64.3 12.4 141 151-293 434-617 (693)
206 COG1875 NYN ribonuclease and A 96.6 0.0079 1.7E-07 62.6 8.5 42 152-193 225-266 (436)
207 TIGR02639 ClpA ATP-dependent C 96.6 0.014 3E-07 70.3 11.8 83 152-234 455-565 (731)
208 COG0593 DnaA ATPase involved i 96.6 0.017 3.7E-07 62.6 11.2 119 171-292 112-258 (408)
209 TIGR00767 rho transcription te 96.5 0.0051 1.1E-07 66.2 6.8 33 170-203 166-198 (415)
210 KOG2123 Uncharacterized conser 96.5 0.00019 4.1E-09 71.2 -3.6 78 495-575 18-98 (388)
211 PF10443 RNA12: RNA12 protein; 96.5 0.079 1.7E-06 57.4 15.7 167 156-326 1-283 (431)
212 PF13207 AAA_17: AAA domain; P 96.5 0.0022 4.9E-08 58.0 3.6 24 174-197 1-24 (121)
213 TIGR02902 spore_lonB ATP-depen 96.5 0.017 3.8E-07 66.4 11.6 48 149-196 63-110 (531)
214 PRK08116 hypothetical protein; 96.5 0.0031 6.7E-08 65.7 5.0 86 173-260 115-221 (268)
215 PRK11331 5-methylcytosine-spec 96.5 0.0071 1.5E-07 66.3 7.7 46 152-199 176-221 (459)
216 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0042 9.1E-08 66.1 5.8 47 152-198 52-104 (361)
217 PRK06964 DNA polymerase III su 96.5 0.059 1.3E-06 57.8 14.6 153 159-321 9-225 (342)
218 COG1618 Predicted nucleotide k 96.4 0.0065 1.4E-07 55.8 6.0 28 172-199 5-32 (179)
219 COG0542 clpA ATP-binding subun 96.4 0.057 1.2E-06 63.2 15.0 92 152-244 492-617 (786)
220 PF01695 IstB_IS21: IstB-like 96.4 0.0015 3.3E-08 63.4 2.0 61 172-234 47-120 (178)
221 PRK06526 transposase; Provisio 96.4 0.0026 5.7E-08 65.5 3.8 27 172-198 98-124 (254)
222 KOG2739 Leucine-rich acidic nu 96.4 0.0015 3.3E-08 65.0 1.9 58 519-576 64-127 (260)
223 PRK07261 topology modulation p 96.3 0.0079 1.7E-07 58.1 6.3 57 174-233 2-68 (171)
224 PRK09183 transposase/IS protei 96.3 0.0038 8.3E-08 64.7 4.1 27 172-198 102-128 (259)
225 KOG0741 AAA+-type ATPase [Post 96.3 0.064 1.4E-06 58.6 13.0 134 171-311 537-704 (744)
226 KOG2739 Leucine-rich acidic nu 96.3 0.0027 5.8E-08 63.2 2.6 38 541-578 63-104 (260)
227 KOG0739 AAA+-type ATPase [Post 96.3 0.048 1E-06 55.2 11.3 160 153-315 135-335 (439)
228 TIGR02640 gas_vesic_GvpN gas v 96.2 0.062 1.3E-06 56.0 12.8 37 158-196 9-45 (262)
229 COG1484 DnaC DNA replication p 96.2 0.0073 1.6E-07 62.3 5.5 34 162-197 97-130 (254)
230 PF04665 Pox_A32: Poxvirus A32 96.2 0.0089 1.9E-07 60.2 5.9 26 173-198 14-39 (241)
231 PRK06696 uridine kinase; Valid 96.2 0.0079 1.7E-07 61.1 5.7 43 155-197 2-47 (223)
232 PRK04132 replication factor C 96.1 0.05 1.1E-06 65.0 12.9 140 180-320 574-730 (846)
233 KOG1947 Leucine rich repeat pr 96.1 0.00078 1.7E-08 77.6 -2.2 243 541-846 186-445 (482)
234 PRK08939 primosomal protein Dn 96.1 0.0099 2.1E-07 63.0 6.3 103 155-259 135-260 (306)
235 COG0464 SpoVK ATPases of the A 96.1 0.064 1.4E-06 61.8 13.4 122 171-294 275-426 (494)
236 COG5238 RNA1 Ran GTPase-activa 96.0 0.002 4.4E-08 63.9 0.6 247 539-817 26-317 (388)
237 PRK10733 hflB ATP-dependent me 96.0 0.036 7.9E-07 65.4 11.0 138 173-314 186-356 (644)
238 COG3267 ExeA Type II secretory 96.0 0.085 1.8E-06 52.7 11.6 155 169-323 48-247 (269)
239 KOG0743 AAA+-type ATPase [Post 96.0 0.55 1.2E-05 51.0 18.5 146 173-328 236-417 (457)
240 PRK12377 putative replication 96.0 0.016 3.6E-07 59.2 6.9 29 171-199 100-128 (248)
241 KOG1947 Leucine rich repeat pr 95.9 0.0013 2.8E-08 75.8 -1.7 121 718-841 187-308 (482)
242 PF05621 TniB: Bacterial TniB 95.9 0.06 1.3E-06 55.7 10.5 160 158-319 44-259 (302)
243 PF05659 RPW8: Arabidopsis bro 95.9 0.067 1.4E-06 49.6 9.7 85 33-124 29-113 (147)
244 PRK08699 DNA polymerase III su 95.8 0.11 2.5E-06 55.6 12.9 137 172-317 21-202 (325)
245 KOG2035 Replication factor C, 95.8 0.3 6.5E-06 49.3 14.5 190 152-342 14-260 (351)
246 KOG0733 Nuclear AAA ATPase (VC 95.8 0.1 2.2E-06 58.1 12.3 140 172-315 545-718 (802)
247 PF13604 AAA_30: AAA domain; P 95.8 0.028 6.2E-07 55.6 7.5 38 162-199 8-45 (196)
248 COG2607 Predicted ATPase (AAA+ 95.8 0.087 1.9E-06 51.9 10.3 96 150-245 59-165 (287)
249 COG2884 FtsE Predicted ATPase 95.7 0.017 3.6E-07 54.8 5.3 28 171-198 27-54 (223)
250 PF14532 Sigma54_activ_2: Sigm 95.7 0.0076 1.6E-07 56.0 3.0 103 155-260 2-110 (138)
251 KOG0652 26S proteasome regulat 95.6 0.33 7.1E-06 48.2 13.8 162 142-305 162-371 (424)
252 PRK06921 hypothetical protein; 95.6 0.015 3.2E-07 60.5 5.1 29 171-199 116-144 (266)
253 PRK13695 putative NTPase; Prov 95.6 0.054 1.2E-06 52.6 8.6 24 174-197 2-25 (174)
254 PRK13236 nitrogenase reductase 95.6 0.017 3.8E-07 61.3 5.5 30 169-198 3-32 (296)
255 PRK15455 PrkA family serine pr 95.5 0.02 4.3E-07 64.3 5.7 49 150-198 75-129 (644)
256 PRK06835 DNA replication prote 95.5 0.02 4.4E-07 61.2 5.5 28 172-199 183-210 (329)
257 COG0465 HflB ATP-dependent Zn 95.5 0.11 2.3E-06 59.3 11.3 85 150-234 149-254 (596)
258 CHL00095 clpC Clp protease ATP 95.5 0.038 8.3E-07 67.4 8.5 94 151-244 509-635 (821)
259 KOG2228 Origin recognition com 95.4 0.1 2.2E-06 54.1 9.9 142 151-292 24-220 (408)
260 PRK06547 hypothetical protein; 95.4 0.023 5E-07 54.8 5.3 35 163-197 6-40 (172)
261 PRK11034 clpA ATP-dependent Cl 95.4 0.032 7E-07 66.4 7.5 90 152-241 459-578 (758)
262 TIGR03346 chaperone_ClpB ATP-d 95.4 0.044 9.5E-07 67.1 8.8 93 152-244 566-691 (852)
263 PRK07667 uridine kinase; Provi 95.3 0.027 5.8E-07 55.7 5.6 37 161-197 4-42 (193)
264 COG0194 Gmk Guanylate kinase [ 95.3 0.042 9.1E-07 52.2 6.4 25 172-196 4-28 (191)
265 KOG0729 26S proteasome regulat 95.3 0.058 1.2E-06 53.5 7.5 82 150-233 176-281 (435)
266 KOG0736 Peroxisome assembly fa 95.3 0.066 1.4E-06 61.2 8.8 82 151-234 672-776 (953)
267 PRK09270 nucleoside triphospha 95.3 0.029 6.3E-07 57.2 5.7 29 170-198 31-59 (229)
268 PF13238 AAA_18: AAA domain; P 95.3 0.015 3.3E-07 53.1 3.3 22 175-196 1-22 (129)
269 KOG1514 Origin recognition com 95.3 0.38 8.2E-06 54.9 14.5 175 152-326 397-626 (767)
270 PRK13232 nifH nitrogenase redu 95.2 0.022 4.8E-07 59.9 4.9 26 173-198 2-27 (273)
271 PF00560 LRR_1: Leucine Rich R 95.2 0.0099 2.1E-07 35.3 1.2 21 566-586 1-21 (22)
272 PF00485 PRK: Phosphoribulokin 95.2 0.017 3.7E-07 57.2 3.7 25 174-198 1-25 (194)
273 cd02117 NifH_like This family 95.2 0.026 5.6E-07 56.9 5.0 26 173-198 1-26 (212)
274 KOG0727 26S proteasome regulat 95.2 0.079 1.7E-06 52.2 7.9 81 152-234 156-260 (408)
275 COG4088 Predicted nucleotide k 95.2 0.05 1.1E-06 52.2 6.3 27 173-199 2-28 (261)
276 KOG3864 Uncharacterized conser 95.1 0.0045 9.7E-08 59.1 -0.7 71 771-843 121-191 (221)
277 PRK10865 protein disaggregatio 95.1 0.059 1.3E-06 65.8 8.5 45 152-196 569-622 (857)
278 PRK07952 DNA replication prote 95.0 0.072 1.6E-06 54.4 7.7 40 159-198 84-125 (244)
279 PRK05480 uridine/cytidine kina 95.0 0.022 4.9E-07 57.2 4.0 27 170-196 4-30 (209)
280 TIGR01287 nifH nitrogenase iro 95.0 0.028 6E-07 59.3 4.9 26 173-198 1-26 (275)
281 cd02019 NK Nucleoside/nucleoti 95.0 0.021 4.6E-07 45.6 3.0 23 174-196 1-23 (69)
282 TIGR00235 udk uridine kinase. 95.0 0.023 5E-07 56.9 3.9 28 170-197 4-31 (207)
283 PHA02244 ATPase-like protein 95.0 0.076 1.6E-06 56.8 7.8 37 160-198 109-145 (383)
284 PRK13230 nitrogenase reductase 95.0 0.032 6.9E-07 58.9 5.1 26 173-198 2-27 (279)
285 PTZ00301 uridine kinase; Provi 95.0 0.025 5.4E-07 56.4 4.0 26 172-197 3-28 (210)
286 COG0563 Adk Adenylate kinase a 94.9 0.028 6E-07 54.4 4.2 25 174-198 2-26 (178)
287 PF03205 MobB: Molybdopterin g 94.9 0.048 1E-06 50.6 5.5 27 173-199 1-27 (140)
288 PRK08233 hypothetical protein; 94.9 0.025 5.4E-07 55.4 3.7 25 172-196 3-27 (182)
289 COG0470 HolB ATPase involved i 94.8 0.16 3.5E-06 55.0 10.3 126 153-278 3-168 (325)
290 KOG0735 AAA+-type ATPase [Post 94.8 0.13 2.7E-06 58.5 9.2 142 172-314 431-608 (952)
291 PF06309 Torsin: Torsin; Inte 94.8 0.14 3E-06 45.7 7.8 45 152-196 26-77 (127)
292 cd01133 F1-ATPase_beta F1 ATP 94.8 0.071 1.5E-06 54.9 6.8 29 170-198 67-95 (274)
293 PRK13233 nifH nitrogenase redu 94.8 0.035 7.7E-07 58.5 4.8 25 173-197 3-27 (275)
294 PF13671 AAA_33: AAA domain; P 94.7 0.028 6E-07 52.5 3.6 24 174-197 1-24 (143)
295 COG0572 Udk Uridine kinase [Nu 94.7 0.03 6.6E-07 55.1 3.7 28 171-198 7-34 (218)
296 PRK13185 chlL protochlorophyll 94.7 0.041 8.9E-07 57.8 5.1 26 173-198 3-28 (270)
297 KOG1532 GTPase XAB1, interacts 94.7 0.034 7.4E-07 55.5 4.0 29 171-199 18-46 (366)
298 KOG2170 ATPase of the AAA+ sup 94.7 0.12 2.6E-06 52.8 7.8 82 153-234 84-190 (344)
299 PF08433 KTI12: Chromatin asso 94.7 0.074 1.6E-06 55.2 6.8 26 173-198 2-27 (270)
300 KOG1969 DNA replication checkp 94.7 0.053 1.1E-06 61.6 5.9 60 171-234 325-399 (877)
301 PRK13235 nifH nitrogenase redu 94.6 0.041 8.9E-07 57.9 5.0 26 173-198 2-27 (274)
302 PRK13234 nifH nitrogenase redu 94.6 0.046 1E-06 58.0 5.4 28 171-198 3-30 (295)
303 KOG2543 Origin recognition com 94.6 0.13 2.8E-06 54.3 8.2 47 151-197 6-55 (438)
304 COG1419 FlhF Flagellar GTP-bin 94.6 0.13 2.7E-06 55.4 8.4 37 160-196 187-228 (407)
305 PF00448 SRP54: SRP54-type pro 94.6 0.1 2.2E-06 51.6 7.2 26 173-198 2-27 (196)
306 COG1428 Deoxynucleoside kinase 94.6 0.048 1E-06 53.0 4.7 28 172-199 4-31 (216)
307 TIGR01425 SRP54_euk signal rec 94.6 0.59 1.3E-05 51.7 13.7 28 171-198 99-126 (429)
308 PRK10463 hydrogenase nickel in 94.5 0.16 3.5E-06 52.7 8.8 37 162-198 94-130 (290)
309 cd02040 NifH NifH gene encodes 94.5 0.047 1E-06 57.4 5.0 26 173-198 2-27 (270)
310 PF02374 ArsA_ATPase: Anion-tr 94.5 0.049 1.1E-06 57.9 5.0 26 173-198 2-27 (305)
311 PRK06762 hypothetical protein; 94.5 0.037 8E-07 53.3 3.8 25 172-196 2-26 (166)
312 TIGR01360 aden_kin_iso1 adenyl 94.4 0.037 8.1E-07 54.5 3.8 26 171-196 2-27 (188)
313 PRK13531 regulatory ATPase Rav 94.4 0.054 1.2E-06 60.1 5.2 50 152-203 21-70 (498)
314 TIGR02858 spore_III_AA stage I 94.3 0.11 2.5E-06 53.8 7.2 99 161-262 99-231 (270)
315 PRK03839 putative kinase; Prov 94.3 0.037 8E-07 54.1 3.5 25 174-198 2-26 (180)
316 KOG0726 26S proteasome regulat 94.3 0.15 3.2E-06 51.6 7.5 82 150-233 184-289 (440)
317 TIGR01069 mutS2 MutS2 family p 94.3 0.098 2.1E-06 62.8 7.6 162 171-341 321-521 (771)
318 PF13306 LRR_5: Leucine rich r 94.3 0.19 4.1E-06 45.8 8.0 114 494-614 10-127 (129)
319 PF12775 AAA_7: P-loop contain 94.2 0.061 1.3E-06 56.1 5.1 73 161-234 23-112 (272)
320 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.08 1.7E-06 49.5 5.4 89 171-262 25-129 (144)
321 PRK12727 flagellar biosynthesi 94.2 0.85 1.8E-05 51.4 14.0 26 172-197 350-375 (559)
322 TIGR02016 BchX chlorophyllide 94.2 0.061 1.3E-06 57.0 5.0 26 173-198 1-26 (296)
323 TIGR01281 DPOR_bchL light-inde 94.2 0.06 1.3E-06 56.5 5.0 25 174-198 2-26 (268)
324 PRK00771 signal recognition pa 94.2 0.74 1.6E-05 51.3 13.6 28 171-198 94-121 (437)
325 PRK12608 transcription termina 94.2 0.15 3.3E-06 54.8 7.8 39 160-198 120-159 (380)
326 TIGR00554 panK_bact pantothena 94.1 0.065 1.4E-06 56.1 5.0 27 170-196 60-86 (290)
327 cd02032 Bchl_like This family 94.1 0.064 1.4E-06 56.2 5.0 25 174-198 2-26 (267)
328 PF00910 RNA_helicase: RNA hel 94.1 0.04 8.6E-07 48.5 2.9 59 175-235 1-62 (107)
329 KOG0744 AAA+-type ATPase [Post 94.1 0.11 2.3E-06 53.5 6.1 28 172-199 177-204 (423)
330 PF07693 KAP_NTPase: KAP famil 94.0 1.3 2.9E-05 47.8 15.4 42 158-199 3-47 (325)
331 PRK10751 molybdopterin-guanine 94.0 0.059 1.3E-06 51.5 4.1 28 171-198 5-32 (173)
332 PRK04040 adenylate kinase; Pro 94.0 0.05 1.1E-06 53.4 3.6 24 173-196 3-26 (188)
333 PRK00625 shikimate kinase; Pro 94.0 0.046 1E-06 52.7 3.3 24 174-197 2-25 (173)
334 cd02023 UMPK Uridine monophosp 93.9 0.039 8.5E-07 54.9 2.9 23 174-196 1-23 (198)
335 KOG0728 26S proteasome regulat 93.9 1.2 2.7E-05 44.1 12.7 183 155-339 151-387 (404)
336 PRK11889 flhF flagellar biosyn 93.9 0.15 3.3E-06 55.0 7.2 27 171-197 240-266 (436)
337 CHL00206 ycf2 Ycf2; Provisiona 93.9 0.62 1.4E-05 59.5 13.4 27 172-198 1630-1656(2281)
338 PF01583 APS_kinase: Adenylyls 93.9 0.074 1.6E-06 49.8 4.4 28 172-199 2-29 (156)
339 TIGR02030 BchI-ChlI magnesium 93.9 0.087 1.9E-06 56.5 5.6 47 150-196 3-49 (337)
340 PF10236 DAP3: Mitochondrial r 93.9 1.8 3.9E-05 46.2 15.5 46 272-317 258-305 (309)
341 cd02024 NRK1 Nicotinamide ribo 93.9 0.043 9.4E-07 53.5 2.9 23 174-196 1-23 (187)
342 COG3640 CooC CO dehydrogenase 93.9 0.1 2.2E-06 51.5 5.3 23 174-196 2-24 (255)
343 PRK05703 flhF flagellar biosyn 93.9 0.23 5E-06 55.3 9.0 26 172-197 221-246 (424)
344 COG1102 Cmk Cytidylate kinase 93.9 0.05 1.1E-06 50.2 3.0 25 174-198 2-26 (179)
345 PRK05342 clpX ATP-dependent pr 93.9 0.15 3.2E-06 56.5 7.3 46 152-197 72-133 (412)
346 CHL00081 chlI Mg-protoporyphyr 93.9 0.075 1.6E-06 57.1 4.9 49 149-197 15-63 (350)
347 cd02025 PanK Pantothenate kina 93.8 0.046 9.9E-07 55.2 3.1 24 174-197 1-24 (220)
348 cd03283 ABC_MutS-like MutS-lik 93.8 0.15 3.2E-06 50.6 6.6 24 173-196 26-49 (199)
349 TIGR02322 phosphon_PhnN phosph 93.8 0.051 1.1E-06 53.0 3.4 25 173-197 2-26 (179)
350 PRK05541 adenylylsulfate kinas 93.8 0.065 1.4E-06 52.2 4.0 28 171-198 6-33 (176)
351 COG1224 TIP49 DNA helicase TIP 93.7 0.17 3.7E-06 52.8 6.9 54 150-203 38-96 (450)
352 PF00560 LRR_1: Leucine Rich R 93.7 0.025 5.4E-07 33.5 0.5 21 521-541 1-21 (22)
353 PRK00889 adenylylsulfate kinas 93.6 0.083 1.8E-06 51.3 4.4 28 171-198 3-30 (175)
354 PRK00131 aroK shikimate kinase 93.6 0.068 1.5E-06 51.8 3.8 27 172-198 4-30 (175)
355 PRK11608 pspF phage shock prot 93.6 0.11 2.4E-06 56.0 5.7 47 151-197 6-54 (326)
356 TIGR02974 phageshock_pspF psp 93.5 0.096 2.1E-06 56.4 5.1 50 154-203 2-54 (329)
357 TIGR01817 nifA Nif-specific re 93.5 0.11 2.4E-06 60.3 6.1 54 150-203 195-251 (534)
358 cd02028 UMPK_like Uridine mono 93.5 0.063 1.4E-06 52.3 3.3 24 174-197 1-24 (179)
359 PRK06217 hypothetical protein; 93.5 0.061 1.3E-06 52.7 3.3 25 174-198 3-27 (183)
360 CHL00072 chlL photochlorophyll 93.5 0.094 2E-06 55.4 4.9 24 175-198 3-26 (290)
361 PRK13768 GTPase; Provisional 93.5 0.11 2.3E-06 53.8 5.2 27 172-198 2-28 (253)
362 KOG0651 26S proteasome regulat 93.5 0.15 3.3E-06 52.2 5.9 60 172-233 166-236 (388)
363 KOG0737 AAA+-type ATPase [Post 93.4 0.56 1.2E-05 49.5 10.1 82 151-234 92-198 (386)
364 PF03308 ArgK: ArgK protein; 93.4 0.14 3E-06 51.7 5.6 41 159-199 14-56 (266)
365 KOG0735 AAA+-type ATPase [Post 93.4 0.51 1.1E-05 53.8 10.4 60 173-234 702-772 (952)
366 PF06068 TIP49: TIP49 C-termin 93.4 0.19 4.2E-06 53.3 6.8 70 150-219 23-104 (398)
367 cd01131 PilT Pilus retraction 93.4 0.18 3.9E-06 50.1 6.4 86 173-262 2-111 (198)
368 KOG0066 eIF2-interacting prote 93.4 0.25 5.4E-06 52.7 7.5 24 172-195 613-636 (807)
369 cd00227 CPT Chloramphenicol (C 93.4 0.076 1.6E-06 51.6 3.6 25 172-196 2-26 (175)
370 cd03281 ABC_MSH5_euk MutS5 hom 93.3 0.37 7.9E-06 48.4 8.6 92 172-263 29-157 (213)
371 TIGR01359 UMP_CMP_kin_fam UMP- 93.3 0.061 1.3E-06 52.7 3.0 24 174-197 1-24 (183)
372 PF00142 Fer4_NifH: 4Fe-4S iro 93.3 0.13 2.8E-06 52.0 5.2 26 173-198 1-26 (273)
373 TIGR00150 HI0065_YjeE ATPase, 93.3 0.16 3.4E-06 46.3 5.2 27 172-198 22-48 (133)
374 PF07728 AAA_5: AAA domain (dy 93.2 0.071 1.5E-06 49.5 3.1 23 175-197 2-24 (139)
375 cd02020 CMPK Cytidine monophos 93.2 0.067 1.4E-06 50.1 3.0 25 174-198 1-25 (147)
376 TIGR00064 ftsY signal recognit 93.2 0.14 3.1E-06 53.3 5.7 28 170-197 70-97 (272)
377 COG1124 DppF ABC-type dipeptid 93.2 0.069 1.5E-06 53.0 3.1 27 171-197 32-58 (252)
378 TIGR03263 guanyl_kin guanylate 93.2 0.064 1.4E-06 52.4 2.9 23 173-195 2-24 (180)
379 PF03193 DUF258: Protein of un 93.2 0.13 2.8E-06 48.5 4.7 35 159-196 25-59 (161)
380 COG0003 ArsA Predicted ATPase 93.2 0.15 3.2E-06 54.1 5.7 26 172-197 2-27 (322)
381 TIGR00073 hypB hydrogenase acc 93.1 0.11 2.3E-06 52.1 4.4 31 167-197 17-47 (207)
382 PRK00300 gmk guanylate kinase; 93.1 0.081 1.8E-06 52.9 3.6 26 171-196 4-29 (205)
383 cd02021 GntK Gluconate kinase 93.1 0.068 1.5E-06 50.4 2.9 23 174-196 1-23 (150)
384 PF12061 DUF3542: Protein of u 93.1 0.21 4.5E-06 51.0 6.2 88 30-122 313-401 (402)
385 PRK12724 flagellar biosynthesi 93.1 0.22 4.9E-06 54.4 7.0 25 172-196 223-247 (432)
386 COG1936 Predicted nucleotide k 93.1 0.072 1.6E-06 49.9 2.7 20 174-193 2-21 (180)
387 cd00820 PEPCK_HprK Phosphoenol 93.0 0.098 2.1E-06 45.5 3.3 22 172-193 15-36 (107)
388 PRK13949 shikimate kinase; Pro 93.0 0.084 1.8E-06 50.9 3.3 26 173-198 2-27 (169)
389 PRK13407 bchI magnesium chelat 93.0 0.13 2.8E-06 55.2 4.9 49 148-196 5-53 (334)
390 COG1763 MobB Molybdopterin-gua 93.0 0.098 2.1E-06 49.3 3.6 28 172-199 2-29 (161)
391 PRK13947 shikimate kinase; Pro 93.0 0.084 1.8E-06 51.0 3.3 25 174-198 3-27 (171)
392 cd01123 Rad51_DMC1_radA Rad51_ 92.9 0.22 4.9E-06 51.0 6.6 25 171-195 18-42 (235)
393 cd02034 CooC The accessory pro 92.9 0.17 3.7E-06 45.1 4.9 24 175-198 2-25 (116)
394 cd00071 GMPK Guanosine monopho 92.9 0.075 1.6E-06 49.2 2.7 23 174-196 1-23 (137)
395 cd00561 CobA_CobO_BtuR ATP:cor 92.9 0.47 1E-05 44.7 8.0 89 173-261 3-139 (159)
396 TIGR02012 tigrfam_recA protein 92.8 0.31 6.7E-06 51.7 7.5 27 171-197 54-80 (321)
397 PF13504 LRR_7: Leucine rich r 92.8 0.072 1.6E-06 29.3 1.5 16 566-581 2-17 (17)
398 PF08477 Miro: Miro-like prote 92.8 0.096 2.1E-06 47.0 3.3 24 175-198 2-25 (119)
399 KOG1970 Checkpoint RAD17-RFC c 92.8 1.5 3.3E-05 48.8 12.7 40 159-198 90-136 (634)
400 TIGR00176 mobB molybdopterin-g 92.8 0.099 2.1E-06 49.5 3.4 26 174-199 1-26 (155)
401 PF07726 AAA_3: ATPase family 92.7 0.068 1.5E-06 47.8 2.0 24 175-198 2-25 (131)
402 PF13306 LRR_5: Leucine rich r 92.7 0.37 8E-06 43.8 7.1 106 511-622 3-112 (129)
403 PRK10078 ribose 1,5-bisphospho 92.7 0.087 1.9E-06 51.8 3.0 24 173-196 3-26 (186)
404 PRK10416 signal recognition pa 92.7 0.18 3.9E-06 53.8 5.6 28 171-198 113-140 (318)
405 PRK07132 DNA polymerase III su 92.7 2.1 4.6E-05 45.2 13.4 154 160-320 5-184 (299)
406 PRK14530 adenylate kinase; Pro 92.7 0.1 2.2E-06 52.7 3.5 25 173-197 4-28 (215)
407 COG3854 SpoIIIAA ncharacterize 92.6 0.5 1.1E-05 46.4 7.8 97 163-262 128-255 (308)
408 PRK05057 aroK shikimate kinase 92.6 0.11 2.4E-06 50.2 3.6 26 172-197 4-29 (172)
409 COG1116 TauB ABC-type nitrate/ 92.6 0.095 2.1E-06 52.4 3.1 26 170-195 27-52 (248)
410 cd00464 SK Shikimate kinase (S 92.6 0.1 2.2E-06 49.4 3.4 24 175-198 2-25 (154)
411 COG1703 ArgK Putative periplas 92.6 0.18 3.9E-06 51.6 5.1 41 161-201 38-80 (323)
412 PRK03846 adenylylsulfate kinas 92.6 0.12 2.6E-06 51.4 3.9 28 170-197 22-49 (198)
413 cd03114 ArgK-like The function 92.5 0.17 3.6E-06 47.5 4.6 25 174-198 1-25 (148)
414 PRK13975 thymidylate kinase; P 92.5 0.11 2.4E-06 51.5 3.6 27 173-199 3-29 (196)
415 PRK15429 formate hydrogenlyase 92.4 0.19 4.1E-06 60.4 6.0 48 150-197 375-424 (686)
416 TIGR01313 therm_gnt_kin carboh 92.4 0.091 2E-06 50.3 2.7 22 175-196 1-22 (163)
417 KOG0738 AAA+-type ATPase [Post 92.4 0.29 6.3E-06 51.7 6.4 26 173-198 246-271 (491)
418 PRK12339 2-phosphoglycerate ki 92.4 0.13 2.8E-06 50.8 3.8 26 172-197 3-28 (197)
419 PRK14527 adenylate kinase; Pro 92.4 0.13 2.9E-06 50.7 3.9 28 170-197 4-31 (191)
420 cd03243 ABC_MutS_homologs The 92.3 0.21 4.5E-06 49.8 5.2 22 173-194 30-51 (202)
421 TIGR00382 clpX endopeptidase C 92.3 0.4 8.7E-06 52.8 7.7 46 152-197 78-141 (413)
422 PF03266 NTPase_1: NTPase; In 92.3 0.14 3E-06 49.1 3.7 24 175-198 2-25 (168)
423 PRK00409 recombination and DNA 92.2 0.3 6.5E-06 58.9 7.3 163 170-341 325-526 (782)
424 COG1348 NifH Nitrogenase subun 92.2 0.18 4E-06 49.4 4.4 26 173-198 2-27 (278)
425 KOG3864 Uncharacterized conser 92.2 0.025 5.5E-07 54.1 -1.4 60 800-870 123-182 (221)
426 COG2019 AdkA Archaeal adenylat 92.2 0.12 2.7E-06 47.9 3.1 25 172-196 4-28 (189)
427 cd00983 recA RecA is a bacter 92.2 0.39 8.5E-06 51.0 7.3 27 171-197 54-80 (325)
428 PF01078 Mg_chelatase: Magnesi 92.2 0.23 4.9E-06 48.8 5.0 43 150-194 2-44 (206)
429 cd02027 APSK Adenosine 5'-phos 92.2 0.12 2.6E-06 48.6 3.2 24 174-197 1-24 (149)
430 PRK13231 nitrogenase reductase 92.1 0.13 2.8E-06 53.8 3.7 26 173-198 3-28 (264)
431 smart00072 GuKc Guanylate kina 92.1 0.26 5.6E-06 48.3 5.6 25 172-196 2-26 (184)
432 PRK15453 phosphoribulokinase; 92.1 0.16 3.5E-06 52.2 4.2 28 170-197 3-30 (290)
433 PRK14737 gmk guanylate kinase; 92.1 0.13 2.9E-06 50.3 3.5 25 171-195 3-27 (186)
434 cd03116 MobB Molybdenum is an 92.1 0.18 3.8E-06 47.9 4.2 26 173-198 2-27 (159)
435 COG1066 Sms Predicted ATP-depe 92.1 0.3 6.5E-06 52.3 6.1 62 172-233 93-179 (456)
436 PRK05439 pantothenate kinase; 92.0 0.25 5.4E-06 52.2 5.6 27 170-196 84-110 (311)
437 PRK14493 putative bifunctional 92.0 0.16 3.4E-06 52.9 4.0 27 173-199 2-28 (274)
438 cd01983 Fer4_NifH The Fer4_Nif 91.9 0.16 3.5E-06 43.4 3.4 25 174-198 1-25 (99)
439 PRK13946 shikimate kinase; Pro 91.9 0.14 3.1E-06 50.1 3.4 27 172-198 10-36 (184)
440 PLN02165 adenylate isopentenyl 91.8 0.2 4.3E-06 53.1 4.5 29 168-196 39-67 (334)
441 PRK13948 shikimate kinase; Pro 91.8 0.18 3.8E-06 49.1 3.9 28 171-198 9-36 (182)
442 cd03115 SRP The signal recogni 91.8 0.26 5.6E-06 47.8 5.1 25 174-198 2-26 (173)
443 PF08298 AAA_PrkA: PrkA AAA do 91.8 0.3 6.6E-06 51.7 5.8 47 152-198 62-114 (358)
444 PRK09825 idnK D-gluconate kina 91.8 0.15 3.2E-06 49.5 3.3 26 173-198 4-29 (176)
445 PRK14738 gmk guanylate kinase; 91.8 0.16 3.4E-06 50.8 3.6 25 171-195 12-36 (206)
446 KOG3347 Predicted nucleotide k 91.7 0.14 3E-06 46.5 2.8 25 172-196 7-31 (176)
447 cd01878 HflX HflX subfamily. 91.7 0.37 8.1E-06 48.1 6.3 27 170-196 39-65 (204)
448 KOG0736 Peroxisome assembly fa 91.7 3.6 7.7E-05 47.8 14.3 160 154-316 404-599 (953)
449 PF00158 Sigma54_activat: Sigm 91.7 0.26 5.7E-06 47.3 4.9 43 154-197 2-47 (168)
450 PRK05022 anaerobic nitric oxid 91.7 0.33 7.1E-06 56.0 6.6 48 150-197 186-235 (509)
451 PRK09354 recA recombinase A; P 91.7 0.53 1.1E-05 50.5 7.6 27 171-197 59-85 (349)
452 COG1126 GlnQ ABC-type polar am 91.7 0.14 3.1E-06 49.8 3.0 27 171-197 27-53 (240)
453 COG0396 sufC Cysteine desulfur 91.7 0.39 8.4E-06 47.4 6.0 26 171-196 29-54 (251)
454 COG2274 SunT ABC-type bacterio 91.7 0.3 6.6E-06 57.8 6.3 24 171-194 498-521 (709)
455 PF00406 ADK: Adenylate kinase 91.7 0.33 7.2E-06 45.8 5.5 21 177-197 1-21 (151)
456 TIGR00390 hslU ATP-dependent p 91.6 0.24 5.3E-06 53.9 5.0 47 152-198 13-73 (441)
457 COG0541 Ffh Signal recognition 91.6 4.6 9.9E-05 44.0 14.4 49 171-240 99-147 (451)
458 PF13521 AAA_28: AAA domain; P 91.6 0.14 3.1E-06 49.0 3.0 21 175-195 2-22 (163)
459 cd02042 ParA ParA and ParB of 91.6 0.26 5.7E-06 42.9 4.5 24 174-197 1-25 (104)
460 PRK04182 cytidylate kinase; Pr 91.5 0.17 3.6E-06 49.3 3.5 25 174-198 2-26 (180)
461 TIGR03499 FlhF flagellar biosy 91.5 0.2 4.2E-06 52.8 4.2 27 171-197 193-219 (282)
462 PF03969 AFG1_ATPase: AFG1-lik 91.4 0.16 3.6E-06 55.1 3.5 63 171-234 61-139 (362)
463 PF10662 PduV-EutP: Ethanolami 91.4 0.17 3.6E-06 46.6 3.0 24 173-196 2-25 (143)
464 cd03285 ABC_MSH2_euk MutS2 hom 91.4 0.5 1.1E-05 47.8 6.8 24 171-194 29-52 (222)
465 PRK05416 glmZ(sRNA)-inactivati 91.4 0.51 1.1E-05 49.5 7.0 56 172-231 6-65 (288)
466 PF00005 ABC_tran: ABC transpo 91.3 0.15 3.2E-06 47.2 2.7 26 172-197 11-36 (137)
467 PF00006 ATP-synt_ab: ATP synt 91.3 0.36 7.8E-06 48.2 5.5 26 172-197 15-40 (215)
468 PF03215 Rad17: Rad17 cell cyc 91.3 0.26 5.7E-06 56.1 5.1 45 153-197 21-70 (519)
469 TIGR02173 cyt_kin_arch cytidyl 91.2 0.19 4.1E-06 48.5 3.5 24 174-197 2-25 (171)
470 PF06564 YhjQ: YhjQ protein; 91.2 0.32 6.9E-06 49.2 5.1 26 173-198 2-28 (243)
471 COG1136 SalX ABC-type antimicr 91.2 0.17 3.8E-06 50.4 3.2 26 171-196 30-55 (226)
472 KOG0740 AAA+-type ATPase [Post 91.2 2.3 5.1E-05 46.6 11.9 63 171-234 185-257 (428)
473 PRK03731 aroL shikimate kinase 91.2 0.19 4.2E-06 48.5 3.5 26 173-198 3-28 (171)
474 PRK04296 thymidine kinase; Pro 91.1 0.57 1.2E-05 46.1 6.8 88 173-262 3-118 (190)
475 PF03029 ATP_bind_1: Conserved 91.1 0.15 3.3E-06 52.0 2.8 22 177-198 1-22 (238)
476 PLN02348 phosphoribulokinase 91.1 0.23 5.1E-06 53.6 4.3 28 170-197 47-74 (395)
477 TIGR00750 lao LAO/AO transport 91.1 0.35 7.5E-06 51.5 5.6 37 162-198 22-60 (300)
478 PF13245 AAA_19: Part of AAA d 91.1 0.27 5.8E-06 40.0 3.6 26 171-196 9-35 (76)
479 cd03287 ABC_MSH3_euk MutS3 hom 91.1 0.61 1.3E-05 47.0 7.0 92 171-263 30-157 (222)
480 PRK10037 cell division protein 91.0 0.28 6.2E-06 50.7 4.7 26 173-198 2-28 (250)
481 PRK09435 membrane ATPase/prote 91.0 0.43 9.3E-06 51.1 6.1 37 162-198 44-82 (332)
482 PLN02796 D-glycerate 3-kinase 91.0 0.2 4.2E-06 53.4 3.5 27 171-197 99-125 (347)
483 TIGR03371 cellulose_yhjQ cellu 91.0 0.31 6.8E-06 50.3 5.0 26 173-198 2-28 (246)
484 PRK14974 cell division protein 91.0 0.43 9.3E-06 51.2 6.1 28 171-198 139-166 (336)
485 TIGR03574 selen_PSTK L-seryl-t 90.9 0.18 4E-06 52.1 3.2 24 174-197 1-24 (249)
486 PLN02200 adenylate kinase fami 90.9 0.23 5.1E-06 50.6 3.9 27 171-197 42-68 (234)
487 PRK06761 hypothetical protein; 90.8 0.21 4.5E-06 52.0 3.5 26 173-198 4-29 (282)
488 PLN02318 phosphoribulokinase/u 90.8 0.27 5.9E-06 55.8 4.5 27 169-195 62-88 (656)
489 PRK14721 flhF flagellar biosyn 90.8 0.93 2E-05 50.1 8.6 24 172-195 191-214 (420)
490 COG0529 CysC Adenylylsulfate k 90.7 0.49 1.1E-05 44.6 5.4 30 169-198 20-49 (197)
491 TIGR01650 PD_CobS cobaltochela 90.7 0.57 1.2E-05 49.6 6.6 45 152-198 46-90 (327)
492 TIGR02688 conserved hypothetic 90.6 2.8 6.1E-05 45.9 11.8 59 173-233 210-271 (449)
493 PRK08099 bifunctional DNA-bind 90.6 0.21 4.6E-06 55.1 3.5 29 169-197 216-244 (399)
494 cd01672 TMPK Thymidine monopho 90.6 0.26 5.7E-06 48.9 3.9 24 174-197 2-25 (200)
495 PTZ00088 adenylate kinase 1; P 90.6 0.22 4.8E-06 50.4 3.4 24 174-197 8-31 (229)
496 COG0237 CoaE Dephospho-CoA kin 90.5 0.25 5.4E-06 48.7 3.5 23 172-194 2-24 (201)
497 KOG0058 Peptide exporter, ABC 90.5 0.51 1.1E-05 54.3 6.4 24 171-194 493-516 (716)
498 PRK11176 lipid transporter ATP 90.5 0.43 9.3E-06 56.4 6.2 26 171-196 368-393 (582)
499 PRK10867 signal recognition pa 90.5 1.3 2.8E-05 49.4 9.4 28 171-198 99-126 (433)
500 COG1100 GTPase SAR1 and relate 90.5 0.17 3.6E-06 51.2 2.4 26 173-198 6-31 (219)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.2e-83 Score=747.88 Aligned_cols=764 Identities=26% Similarity=0.381 Sum_probs=563.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhc---------------
Q 038510 29 YKTNFEKLNNEVDKLKNARDSMQCKVDDSRIKGDGIQQHVEEWLFAANKEINEVETIIEDKENSN--------------- 93 (871)
Q Consensus 29 ~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~--------------- 93 (871)
....+.+.++.+..|+..|..++.++++|+.++.. ...+..|...+++++|++||.++.+.-..
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~ 97 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVE 97 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHH
Confidence 34456677889999999999999999999998753 77889999999999999999987652110
Q ss_pred --ccccCCCC-cchHHHHHHhHHHHHHHHHHHhhhhcCCCCeeecccCC-CcccccccCCccccccchHHHHHHHHHhcC
Q 038510 94 --NRCLKGLC-PNLRARYQLSKKAEREANTIVGLHEKGRFDSVSFRTIP-EETWLKSTQDFMHFESRKSTFKEILDALSN 169 (871)
Q Consensus 94 --~~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~ 169 (871)
.-|+.+.+ ..+...+.+++++.++.+.++.+..++.|..+.....+ ......+...... +|.++.++++.+.|.+
T Consensus 98 ~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 98 RQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred HHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 11111111 22333445566666666666666545455544331112 2222222333333 8999999999999998
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh-hccccc--------------------------------ccchhhHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK-ENNLFE--------------------------------KSHETVRAGRLLE 216 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~--------------------------------~~~~~~~~~~l~~ 216 (871)
++..+++|+||||+||||||++++|+.. ++.+|| ..........+.+
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~ 256 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLN 256 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHH
Confidence 8889999999999999999999999998 888998 0011234455666
Q ss_pred HHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcchhccccCCcceeeccCCCHHHHHHHHHHHhCCC--
Q 038510 217 RLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDC-- 294 (871)
Q Consensus 217 ~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-- 294 (871)
.|. +|||+||+||||+..+|+.+..++|...+||||++|||++.|+...|++...+++++|+.+|||.||++.++..
T Consensus 257 ~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~ 335 (889)
T KOG4658|consen 257 LLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL 335 (889)
T ss_pred Hhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc
Confidence 666 69999999999999999999999999999999999999999987668889999999999999999999999854
Q ss_pred CCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHH
Q 038510 295 IENGELKSVATEIVKECAGLPIAIVPVARALINK-RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKR 373 (871)
Q Consensus 295 ~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~ 373 (871)
...+.++++|++|+++|+|+|||++++|++|+.| +..+|+++++.+.+....+.+++.+.++++|++||++||++ +|.
T Consensus 336 ~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~ 414 (889)
T KOG4658|consen 336 GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKS 414 (889)
T ss_pred cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHH
Confidence 3345589999999999999999999999999987 78899999999988866666777899999999999999976 999
Q ss_pred HHHhhcccc---cchhhhHHHHhhcccccccccchHHHHHHHHHHHHHHHHhcccccCC---CccceehhHHHHHHHHHH
Q 038510 374 TFLLIGYAF---ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVDKLKKSCLLVDGN---TSERFSMHDVVRDAAISI 447 (871)
Q Consensus 374 cfl~~s~fp---~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~~Hdlv~d~a~~~ 447 (871)
||+|||+|| .|+++.|+.+|+||||+.+....+.+++.+++|+.+|+.++|++... ...+|+|||+|||+|.++
T Consensus 415 CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~i 494 (889)
T KOG4658|consen 415 CFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWI 494 (889)
T ss_pred HHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHH
Confidence 999999999 68889999999999999886667888999999999999999998764 457899999999999999
Q ss_pred hc-----CCceEEEEecCCCcccCCCCcccccccceeecccCCcCcCCCCCCCCCceEEEecCCC--CCccCcccccCCC
Q 038510 448 AS-----GDQHVFVVESEVAPQIIWPDKEKLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDP--SLRIPDNFFTGMT 520 (871)
Q Consensus 448 ~~-----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~ 520 (871)
|+ +|+.+. ..+..... .+....+..+|++++.++.+..++....+++|++|.+.++. ...++..+|..++
T Consensus 495 as~~~~~~e~~iv-~~~~~~~~--~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~ 571 (889)
T KOG4658|consen 495 ASDFGKQEENQIV-SDGVGLSE--IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLP 571 (889)
T ss_pred hccccccccceEE-ECCcCccc--cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCc
Confidence 99 666332 22212222 24445567899999999999999999999999999999975 6788888899999
Q ss_pred cceEEEecCCC-CCCCCCccccccCCcEEEecccCCCC-CcccCCCCCccEEEeeCCCc-cccchhhcCCCCCCEEeCCC
Q 038510 521 GLKVLDFTEMH-LLPLPSSLGLLQNLQTLCLNYCNLGD-IAIIGDLKKLEILSLRGSDV-EKLVGEMGQLTQLRLLDLSK 597 (871)
Q Consensus 521 ~Lr~L~l~~~~-i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~~i~~l~~L~~L~l~~~~i-~~lp~~i~~L~~L~~L~l~~ 597 (871)
.||||||++|. +..+|++|++|.|||||+++++.+.. |..+++|..|++||+..+.- ..+|..+..|++||+|.+..
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 99999999764 56999999999999999999999988 78899999999999988843 34455555699999998876
Q ss_pred CCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeE----EEeeccCCCCCcchhhhcc
Q 038510 598 CFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSL----EILIQDEKTIPSDLLFFKI 673 (871)
Q Consensus 598 ~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L----~i~~~~~~~~~~~l~~l~~ 673 (871)
.. .......++.+.+|++|....+... ....+..+..+.+|+++ .+.+......+..+..+.+
T Consensus 652 s~--~~~~~~~l~el~~Le~L~~ls~~~~-----------s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 652 SA--LSNDKLLLKELENLEHLENLSITIS-----------SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGN 718 (889)
T ss_pred cc--cccchhhHHhhhcccchhhheeecc-----------hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccC
Confidence 42 1111222444555555543322111 01123344445555432 2222223334445566778
Q ss_pred ceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHh-hhcccceEEeeccCCceeccccCCCCCCCCccEEEe
Q 038510 674 LKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIM-QLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEV 752 (871)
Q Consensus 674 L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L 752 (871)
|++|.+..+........ ........ .++++..+...+|....++.+. ...|+|++|.+
T Consensus 719 L~~L~i~~~~~~e~~~~------------------~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f~~~L~~l~l 777 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIE------------------WEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LFAPHLTSLSL 777 (889)
T ss_pred cceEEEEcCCCchhhcc------------------cccccchhhhHHHHHHHHhhccccccccchh---hccCcccEEEE
Confidence 88888766553321000 00000001 1345666666666666655433 34588888888
Q ss_pred ecCCCceeEeecCccc----ccCCcCCcccee-eccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccC
Q 038510 753 RDNRSLFCVVDTVDCA----TALTAFPLLESL-FLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGL 827 (871)
Q Consensus 753 ~~~~~l~~~~~~~~~~----~~~~~fp~L~~L-~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l 827 (871)
.+|+.++.+.+..... .....|+++..+ .+.+.+.+.++.+.+.+ +++|+.+.+..||++..+|
T Consensus 778 ~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~---~~~l~~~~ve~~p~l~~~P-------- 846 (889)
T KOG4658|consen 778 VSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLS---FLKLEELIVEECPKLGKLP-------- 846 (889)
T ss_pred ecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccC---ccchhheehhcCcccccCc--------
Confidence 8888776654322111 013467777777 57777777777655443 6679999999999887663
Q ss_pred CcccEEEeccC-cchHhHh
Q 038510 828 QQLQSIEVTKC-QNMEVIF 845 (871)
Q Consensus 828 ~~L~~L~i~~C-~~l~~i~ 845 (871)
.+.++.+.+| +.+...+
T Consensus 847 -~~~~~~i~~~~~~~~~~~ 864 (889)
T KOG4658|consen 847 -LLSTLTIVGCEEKLKEYP 864 (889)
T ss_pred -cccccceeccccceeecC
Confidence 4556677776 5554444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-62 Score=604.85 Aligned_cols=635 Identities=20% Similarity=0.272 Sum_probs=467.2
Q ss_pred cCCccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc----------c--------
Q 038510 147 TQDFMHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS----------H-------- 206 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~----------~-------- 206 (871)
..+..+++||++.++++..++. .+++++|+||||||+||||||+++|+.... +|+.. .
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~ 257 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSAN 257 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhccccc
Confidence 4456779999999999998875 567899999999999999999999997654 34300 0
Q ss_pred ------hhh------------------HHHHHHHHHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcch
Q 038510 207 ------ETV------------------RAGRLLERLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDV 262 (871)
Q Consensus 207 ------~~~------------------~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 262 (871)
... ....+++.+. ++|+||||||||+..+|+.+.......++||+||||||++.+
T Consensus 258 ~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 258 PDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 000 0123445555 699999999999999999987766667899999999999999
Q ss_pred hccccCCcceeeccCCCHHHHHHHHHHHhCCCC-CCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhc
Q 038510 263 LSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCI-ENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELR 341 (871)
Q Consensus 263 a~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~ 341 (871)
+. .++..++|+++.|++++||+||+++||... +++.+++++++|+++|+|+|||++++|++|++++.++|+++++++.
T Consensus 337 l~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 337 LR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 74 355678999999999999999999999544 4557889999999999999999999999999999999999999987
Q ss_pred CCCCCCccchhhhhheecccccccCChhhHHHHHHhhcccc-cchhhhHHHHhhcccccccccchHHHHHHHHHHHHHHH
Q 038510 342 RPSFRNISGTLEVAYKSIELSYNHLNREELKRTFLLIGYAF-ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVDKLK 420 (871)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp-~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~ 420 (871)
... ...+.++|++||+.|+++..|.||+++|+|| +.+.+ .+..|+|.+.... ...++.|+
T Consensus 416 ~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~~-----------~~~l~~L~ 476 (1153)
T PLN03210 416 NGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN-DIKLLLANSDLDV-----------NIGLKNLV 476 (1153)
T ss_pred hCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH-HHHHHHHhcCCCc-----------hhChHHHH
Confidence 532 2578899999999998644799999999999 55443 4677877765431 22488899
Q ss_pred HhcccccCCCccceehhHHHHHHHHHHhcCCce-----EEEEecCCC-----------------------cccCCC--Cc
Q 038510 421 KSCLLVDGNTSERFSMHDVVRDAAISIASGDQH-----VFVVESEVA-----------------------PQIIWP--DK 470 (871)
Q Consensus 421 ~~~l~~~~~~~~~~~~Hdlv~d~a~~~~~~e~~-----~~~~~~~~~-----------------------~~~~~~--~~ 470 (871)
++||++.. .+++.|||++|++|+.++.++.. .+....... ....+. ..
T Consensus 477 ~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF 554 (1153)
T PLN03210 477 DKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAF 554 (1153)
T ss_pred hcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHH
Confidence 99999765 35799999999999999876520 011110000 000000 00
Q ss_pred ccccccceeecccCCc-------CcCCCCC-C-CCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCcccc
Q 038510 471 EKLKVCTAISLIYSNI-------SELPQGF-E-CPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGL 541 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~-------~~l~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~ 541 (871)
..+.+++.+.+..+.. ..+|... . .++||.|.+.+++...+|..+ .+.+|++|+++++.+..+|..+..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcccccccccccc
Confidence 1123344444432211 0123222 1 245788888777777777763 468899999999999889988889
Q ss_pred ccCCcEEEecccC-CCCCcccCCCCCccEEEeeCC-CccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEe
Q 038510 542 LQNLQTLCLNYCN-LGDIAIIGDLKKLEILSLRGS-DVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELY 619 (871)
Q Consensus 542 l~~Lr~L~L~~~~-i~~~~~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~ 619 (871)
+++|++|+|++|. ++.++.++.+++|++|++++| .+..+|..++++++|++|++++|..++.+|.+ + ++++|+.|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEe
Confidence 9999999999876 566777889999999999987 67789999999999999999999899999986 3 789999999
Q ss_pred cccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeec---ccCCCC-----C
Q 038510 620 IGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYL---WSDDPI-----L 691 (871)
Q Consensus 620 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~---~~~~~~-----~ 691 (871)
+++|...... .. ..++|+.|.+..+.+..+|..+ .+++|.+|.+..+.. |..... .
T Consensus 711 Lsgc~~L~~~-------------p~--~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 711 LSGCSRLKSF-------------PD--ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CCCCCCcccc-------------cc--ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhh
Confidence 9887532111 11 1357889999988888888776 577788777654221 110000 1
Q ss_pred CCccceeEEEeccCCc-ccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCccccc
Q 038510 692 DGFSRKFKLKITNGAN-ICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATA 770 (871)
Q Consensus 692 ~~~~~l~~L~l~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 770 (871)
..++++..|.++++.. ..+|.++ ..+++|+.|++.+|..++.++.. ..+++|+.|.+++|..+..++.
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~------- 843 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPD------- 843 (1153)
T ss_pred hccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCccccccc-------
Confidence 1125677777776542 2355554 34688888888888777766533 3678888888888877655421
Q ss_pred CCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHhHh
Q 038510 771 LTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEVIF 845 (871)
Q Consensus 771 ~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~ 845 (871)
..++|+.|.+++ +.++.+|. ....+++|+.|++.+|++|+.++.. +..+++|+.+++.+|++++.+.
T Consensus 844 --~~~nL~~L~Ls~-n~i~~iP~---si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 844 --ISTNISDLNLSR-TGIEEVPW---WIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred --cccccCEeECCC-CCCccChH---HHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence 246788888877 56666643 3457899999999999999998663 4778999999999999997664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.6e-39 Score=346.81 Aligned_cols=243 Identities=31% Similarity=0.499 Sum_probs=191.2
Q ss_pred chHHHHHHHHHhcC--CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--------------------------c---
Q 038510 156 RKSTFKEILDALSN--RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--------------------------K--- 204 (871)
Q Consensus 156 r~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------------------------~--- 204 (871)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+ .
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999997 7899999999999999999999999988878887 0
Q ss_pred ----cchhhHHHHHHHHHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcchhccccCCcceeeccCCCH
Q 038510 205 ----SHETVRAGRLLERLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNE 280 (871)
Q Consensus 205 ----~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~~~~~~~~~~~l~~L~~ 280 (871)
.........+.+.+. ++++||||||||+...|+.+...++....|++||||||+..++.........|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 012234455666666 579999999999999999998888888889999999999988743333368999999999
Q ss_pred HHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCchhHHHHHHHHHhcC-ChhHHHHHHHHhcCCCCCCccchhhhhhe
Q 038510 281 KEAWSLFRKMTGDCI--ENGELKSVATEIVKECAGLPIAIVPVARALINK-RLFEWKDSLLELRRPSFRNISGTLEVAYK 357 (871)
Q Consensus 281 ~~~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 357 (871)
+||++||.+.++... ..+.+++.+++|+++|+|+||||+++|++|+.+ +..+|+++++++...... ..+....+..
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999998544 445667889999999999999999999999744 789999999887655432 2224578999
Q ss_pred ecccccccCChhhHHHHHHhhcccc---cchhhhHHHHhhccccccc
Q 038510 358 SIELSYNHLNREELKRTFLLIGYAF---ISCVKDVLYHGMGLGLFQN 401 (871)
Q Consensus 358 ~l~~sy~~L~~~~lk~cfl~~s~fp---~~~~~~li~~w~aeg~i~~ 401 (871)
++.+||+.||++ +|+||+|||+|| .|+++.++++|++||||+.
T Consensus 239 ~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999997 999999999999 6889999999999999975
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=4.2e-22 Score=248.61 Aligned_cols=148 Identities=24% Similarity=0.372 Sum_probs=76.2
Q ss_pred ccccceeecccCCcC-cCCCCC--CCCCceEEEecCCCCC-ccCcccccCCCcceEEEecCCCCC-CCCCccccccCCcE
Q 038510 473 LKVCTAISLIYSNIS-ELPQGF--ECPQLKYFRIGNDPSL-RIPDNFFTGMTGLKVLDFTEMHLL-PLPSSLGLLQNLQT 547 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~-~l~~~~--~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~i~-~lp~~i~~l~~Lr~ 547 (871)
.+.++.|++++|.+. .+|... .+++|+.|++++|... .+|. ..+++|++|++++|.+. .+|..++++.+|++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 168 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV 168 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence 345555555555553 344322 4555555555554332 2222 23455555555555554 44555555555555
Q ss_pred EEecccCCCC--CcccCCCCCccEEEeeCCCcc-ccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCC
Q 038510 548 LCLNYCNLGD--IAIIGDLKKLEILSLRGSDVE-KLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESP 624 (871)
Q Consensus 548 L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 624 (871)
|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.
T Consensus 169 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN 247 (968)
T ss_pred EECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce
Confidence 5555555432 344555555555555555544 34555555555555555555433344444 4555555555555544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=6.8e-22 Score=246.73 Aligned_cols=148 Identities=27% Similarity=0.430 Sum_probs=92.2
Q ss_pred ccceeecccCCcCcC-CC-CCCCCCceEEEecCCCCC-ccCcccccCCCcceEEEecCCCCC-CCCCccccccCCcEEEe
Q 038510 475 VCTAISLIYSNISEL-PQ-GFECPQLKYFRIGNDPSL-RIPDNFFTGMTGLKVLDFTEMHLL-PLPSSLGLLQNLQTLCL 550 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l-~~-~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~i~-~lp~~i~~l~~Lr~L~L 550 (871)
+++.++++++.+... +. ...+++|+.|++++|... .+|..++.++.+|++|++++|.++ .+|. +.+++|++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 466666666655432 21 125667777777665543 566666666677777777776665 3332 45667777777
Q ss_pred cccCCCC--CcccCCCCCccEEEeeCCCcc-ccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 551 NYCNLGD--IAIIGDLKKLEILSLRGSDVE-KLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 551 ~~~~i~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++.+|.+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 7776643 455667777777777776654 56666677777777777766544555555 66677777777766654
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2e-19 Score=224.38 Aligned_cols=357 Identities=18% Similarity=0.167 Sum_probs=253.5
Q ss_pred cccceeecccCCcCcCCC----CCCCCCceEEEecCCC-------CCccCcccccCCCcceEEEecCCCCCCCCCccccc
Q 038510 474 KVCTAISLIYSNISELPQ----GFECPQLKYFRIGNDP-------SLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLL 542 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l~~----~~~~~~L~~L~l~~~~-------~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l 542 (871)
.+++.+++..+.+..+.- ...+++|+.|.+..+. ...+|..+..-...||.|++.++.+..+|..+ .+
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RP 610 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-Cc
Confidence 456667666555443211 2378999999886532 22456554333457999999999999999887 57
Q ss_pred cCCcEEEecccCCCC-CcccCCCCCccEEEeeCC-CccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEec
Q 038510 543 QNLQTLCLNYCNLGD-IAIIGDLKKLEILSLRGS-DVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYI 620 (871)
Q Consensus 543 ~~Lr~L~L~~~~i~~-~~~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 620 (871)
.+|+.|++++|.+.. +..+..+++|++|+++++ .+..+|. +..+++|++|++.+|..+..+|.. ++++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeC
Confidence 899999999999887 577889999999999987 5777875 888999999999999999999987 899999999999
Q ss_pred ccCCCCccccccccchhcccchhhhccCCCCCeEEEeecc-CCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeE
Q 038510 621 GESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQD-EKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFK 699 (871)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~ 699 (871)
.+|...... ..-.++++|+.|.+.++. ...+|.. ..+|+.|.+..+.....+.. -.++++..
T Consensus 689 ~~c~~L~~L-------------p~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~-~~l~~L~~ 751 (1153)
T PLN03210 689 SRCENLEIL-------------PTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSN-LRLENLDE 751 (1153)
T ss_pred CCCCCcCcc-------------CCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccccc-cccccccc
Confidence 887532111 111157888999887543 3444432 46788888765543222221 23456666
Q ss_pred EEeccCCcc-------cchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCC
Q 038510 700 LKITNGANI-------CLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALT 772 (871)
Q Consensus 700 L~l~~~~~~-------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 772 (871)
|.+.+.... .++......+++|+.|++++|.....++... +++++|+.|.|++|+.++.++.. .
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~-------~ 822 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG-------I 822 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC-------C
Confidence 665442211 1122223345789999999988777776554 88999999999999988877432 2
Q ss_pred cCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHhHhhcCCCCc
Q 038510 773 AFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEVIFAADRGDE 852 (871)
Q Consensus 773 ~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~ 852 (871)
.+++|+.|.|++|..+..++. ..++|+.|++.++ .++.+|. .+..+++|+.|++.+|++++.+..... ..
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~~~-~L 892 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLNIS-KL 892 (1153)
T ss_pred CccccCEEECCCCCccccccc------cccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCcccc-cc
Confidence 589999999999999887642 2478999999885 6887754 358899999999999999998765322 12
Q ss_pred ccCCCccccccccccee
Q 038510 853 SSNNNTQVIELTQLRTL 869 (871)
Q Consensus 853 ~~~~~~~~~~~p~L~~l 869 (871)
.......+..|++|..+
T Consensus 893 ~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 893 KHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCCCeeecCCCcccccc
Confidence 23333445566666544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.3e-22 Score=215.08 Aligned_cols=319 Identities=18% Similarity=0.217 Sum_probs=205.5
Q ss_pred ccccccceeecccCCcCcCCC-CCCCCCceEEEecCCCC--CccCcccccCCCcceEEEecCCCCCCCCCccccccCCcE
Q 038510 471 EKLKVCTAISLIYSNISELPQ-GFECPQLKYFRIGNDPS--LRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQT 547 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~ 547 (871)
....++.||++..|++..+.. ...++.||++.+..|.. ..+|..+| .+..|.+|||++|++.+.|..+..-+++-+
T Consensus 52 ~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 52 SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 346788999999998876654 34889999999887543 45888866 589999999999999999999999999999
Q ss_pred EEecccCCCC-Cc-ccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 548 LCLNYCNLGD-IA-IIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 548 L~L~~~~i~~-~~-~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
|+|++|+|.. |. -+-+|.-|-+||+++|.+..+|+.+.+|.+|++|.+++|+. ......-+.++++|+.|.+++...
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccc
Confidence 9999999987 53 36789999999999999999999999999999999998743 222111145677888888877543
Q ss_pred CccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccC
Q 038510 626 QWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNG 705 (871)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~ 705 (871)
+. ......+.+|.||+.+++++++...+|..+..+.+|++|+++++.............++..|+++.+
T Consensus 210 Tl-----------~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 210 TL-----------DNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hh-----------hcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence 22 1234557788899999999999988998888889999998876543222222222234444444444
Q ss_pred CcccchhhHHhhhcccceEEeeccCCce-eccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccc
Q 038510 706 ANICLNEGHIMQLKGIEDLSLHGLLDMK-NVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLED 784 (871)
Q Consensus 706 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 784 (871)
....+|..+-. ++.|+.|.+.+++..- .+|+ .+|.+.+|+.+...+ +.++-++. +..-+++|+.|.++.
T Consensus 279 QLt~LP~avcK-L~kL~kLy~n~NkL~FeGiPS--GIGKL~~Levf~aan-N~LElVPE------glcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 279 QLTVLPDAVCK-LTKLTKLYANNNKLTFEGIPS--GIGKLIQLEVFHAAN-NKLELVPE------GLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhccchHHHhh-hHHHHHHHhccCcccccCCcc--chhhhhhhHHHHhhc-cccccCch------hhhhhHHHHHhcccc
Confidence 44444444322 2444444443332211 1111 124445555554444 23333321 223345555555543
Q ss_pred cccccccccccCCccccCCCCeEEEecCCCCC
Q 038510 785 LGNLEKICRGSLTAESFCKLKNIRVQRCDKLK 816 (871)
Q Consensus 785 ~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~ 816 (871)
+.+-.+|.+ ..-+|-|+.|+++..|+|.
T Consensus 349 -NrLiTLPea---IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 349 -NRLITLPEA---IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred -cceeechhh---hhhcCCcceeeccCCcCcc
Confidence 444444322 1234555555555555544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.81 E-value=1e-20 Score=199.94 Aligned_cols=339 Identities=17% Similarity=0.243 Sum_probs=196.0
Q ss_pred ccccceeecccCCcCcCCCCCC-CCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEe
Q 038510 473 LKVCTAISLIYSNISELPQGFE-CPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCL 550 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L 550 (871)
.++++.+++..|.+..+|.... ..+|+.|.+.+|.+..+....++-++.||+|||+.|.|+.+|. ++..=.++++|+|
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 4566666777777777776653 4447777777777777766667777778888888887777663 4555567888888
Q ss_pred cccCCCCC--cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCc
Q 038510 551 NYCNLGDI--AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 551 ~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
++|+|+.+ ..+..+.+|.+|.|+.|.++.+|. .+.+|++|+.|++..| .+..+.--.+..|.+|+.|.+..|.+..
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 88887764 567777778888888888887774 3555888888887775 4444433335667777777776665432
Q ss_pred cccccccchhcccchhhhccCCCCCeEEEeeccCCCCC-cchhhhccceeEEEEeeecccCCC-CCCCccceeEEEeccC
Q 038510 628 GTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIP-SDLLFFKILKRYRIFIGYLWSDDP-ILDGFSRKFKLKITNG 705 (871)
Q Consensus 628 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~l~~~ 705 (871)
.. + ..+-.|.+++.|++..+...++. .|+..++.|+.|+++.+..-.... .-.-.+++..|+++.+
T Consensus 260 L~-D-----------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 260 LD-D-----------GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred cc-C-----------cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 21 1 12445556666666665554443 344556666666665443211110 0111245556666666
Q ss_pred CcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccc
Q 038510 706 ANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDL 785 (871)
Q Consensus 706 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~ 785 (871)
....+++.-...++.|+.|.|+.+.-- .+ ....+.++.+|+.|+|+++ .+.....+ ......++|+|++|.+.+
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l-~e~af~~lssL~~LdLr~N-~ls~~IED--aa~~f~gl~~LrkL~l~g- 401 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSID-HL-AEGAFVGLSSLHKLDLRSN-ELSWCIED--AAVAFNGLPSLRKLRLTG- 401 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchH-HH-HhhHHHHhhhhhhhcCcCC-eEEEEEec--chhhhccchhhhheeecC-
Confidence 555666655555666666666554321 11 1111245666666666663 23322221 112333466666666666
Q ss_pred ccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEe
Q 038510 786 GNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEV 835 (871)
Q Consensus 786 ~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i 835 (871)
++++.++...|. .+++|++|++.+.+ +.++-+. .+..+ .|++|.+
T Consensus 402 Nqlk~I~krAfs--gl~~LE~LdL~~Na-iaSIq~n-AFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 402 NQLKSIPKRAFS--GLEALEHLDLGDNA-IASIQPN-AFEPM-ELKELVM 446 (873)
T ss_pred ceeeecchhhhc--cCcccceecCCCCc-ceeeccc-ccccc-hhhhhhh
Confidence 566666554443 36666666666532 4444332 22444 5555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=9.4e-22 Score=208.69 Aligned_cols=342 Identities=19% Similarity=0.251 Sum_probs=274.7
Q ss_pred CcccccccceeecccCCcCcCCCCC-CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCC--CCCCccccccCC
Q 038510 469 DKEKLKVCTAISLIYSNISELPQGF-ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLL--PLPSSLGLLQNL 545 (871)
Q Consensus 469 ~~~~~~~~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~--~lp~~i~~l~~L 545 (871)
+...+..++.|-+....+..+|+.. .+.+|..|.+.+|....+... ++.++.||.+++..|++. .+|..|-.|..|
T Consensus 27 ~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccc
Confidence 3445667888888888888888765 789999999998887777665 678999999999999987 789999999999
Q ss_pred cEEEecccCCCC-CcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccC
Q 038510 546 QTLCLNYCNLGD-IAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGES 623 (871)
Q Consensus 546 r~L~L~~~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 623 (871)
..|+|+.|.+++ |..+..-+++.+|++++|+|..+|.. +-+|..|-+|++++| .+..+|+. +..|.+||+|.+++|
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNN 183 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCC
Confidence 999999999988 88899999999999999999999965 668999999999997 89999999 899999999999998
Q ss_pred CCCccccccccchhcccchhhhccCCCCCeEEEeec--cCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEE
Q 038510 624 PIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQ--DEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLK 701 (871)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~ 701 (871)
++. -.-+..|..++.|+.|++++. ....+|.++..+.+|..++++.++....++.+..+.++..|+
T Consensus 184 PL~------------hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 184 PLN------------HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred hhh------------HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 753 223556777778888888754 356789999999999999998666555556666678899999
Q ss_pred eccCCcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceee
Q 038510 702 ITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLF 781 (871)
Q Consensus 702 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~ 781 (871)
++++....+...... -.+|+.|+++.+.. +.+|... ..++.|+.|.+.++ ++. .+....+.+.+.+|+.+.
T Consensus 252 LS~N~iteL~~~~~~-W~~lEtLNlSrNQL-t~LP~av--cKL~kL~kLy~n~N-kL~----FeGiPSGIGKL~~Levf~ 322 (1255)
T KOG0444|consen 252 LSGNKITELNMTEGE-WENLETLNLSRNQL-TVLPDAV--CKLTKLTKLYANNN-KLT----FEGIPSGIGKLIQLEVFH 322 (1255)
T ss_pred cCcCceeeeeccHHH-Hhhhhhhccccchh-ccchHHH--hhhHHHHHHHhccC-ccc----ccCCccchhhhhhhHHHH
Confidence 998876555544333 26899999988643 3344332 67899999998884 342 223344667788999999
Q ss_pred ccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcch
Q 038510 782 LEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNM 841 (871)
Q Consensus 782 l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 841 (871)
..+ ++++-+|.+ ...++.|++|.+. |..|..+|. .+.-|+.|+.|++.+.|++
T Consensus 323 aan-N~LElVPEg---lcRC~kL~kL~L~-~NrLiTLPe--aIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 323 AAN-NKLELVPEG---LCRCVKLQKLKLD-HNRLITLPE--AIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhc-cccccCchh---hhhhHHHHHhccc-ccceeechh--hhhhcCCcceeeccCCcCc
Confidence 987 677776543 3468999999996 678888865 4578999999999999987
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=3e-20 Score=196.47 Aligned_cols=339 Identities=17% Similarity=0.219 Sum_probs=240.3
Q ss_pred ccccceeecccCCcCcCCCC--CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEE
Q 038510 473 LKVCTAISLIYSNISELPQG--FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLC 549 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~ 549 (871)
+...+.|++++|.+..+... .++++|+.+.+.+|....+|.. .....+|..|+|.+|.|+++. +.+..++.||+||
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f-~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRF-GHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccc-cccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45667788888888765433 5788888888888888888862 233456888899888887654 4577788899999
Q ss_pred ecccCCCCC--cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 550 LNYCNLGDI--AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 550 L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
|+.|.|..+ +++..-.++++|+|++|.|+.+-. .+..+.+|-+|.++.| .++.+|...+.+|++|+.|++..|.+.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccccee
Confidence 999888773 567777889999999998887763 4778889999999886 788899887888999999999888753
Q ss_pred ccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcch-hhhccceeEEEEeeecccC-CCCCCCccceeEEEecc
Q 038510 627 WGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDL-LFFKILKRYRIFIGYLWSD-DPILDGFSRKFKLKITN 704 (871)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~l~~ 704 (871)
.. .-..+.+|+.|+.|.+..+++..+..+. ..+.+++.|++..+..... ...+-++..+..|+++.
T Consensus 235 iv------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 235 IV------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ee------------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 21 1134677888888888888877776554 6678888888876543221 12333456666777766
Q ss_pred CCcccc--hhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeec
Q 038510 705 GANICL--NEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFL 782 (871)
Q Consensus 705 ~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l 782 (871)
+....+ ..| ..++.|+.|+|+.+....-.+.. +..+..|+.|+|++ +++.++.++ ...++.+|++|++
T Consensus 303 NaI~rih~d~W--sftqkL~~LdLs~N~i~~l~~~s--f~~L~~Le~LnLs~-Nsi~~l~e~-----af~~lssL~~LdL 372 (873)
T KOG4194|consen 303 NAIQRIHIDSW--SFTQKLKELDLSSNRITRLDEGS--FRVLSQLEELNLSH-NSIDHLAEG-----AFVGLSSLHKLDL 372 (873)
T ss_pred hhhheeecchh--hhcccceeEeccccccccCChhH--HHHHHHhhhhcccc-cchHHHHhh-----HHHHhhhhhhhcC
Confidence 654333 344 34688999999876443322222 25678889999998 456665322 3455788999999
Q ss_pred cccccccccc--cccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 783 EDLGNLEKIC--RGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 783 ~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
.+. .+. |+ .+......||+|++|.+.+ .+++.++.. .+..+++||+|++.+..
T Consensus 373 r~N-~ls-~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 373 RSN-ELS-WCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCC-eEE-EEEecchhhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCc
Confidence 873 332 21 1112223499999999998 489999664 45889999999997764
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.68 E-value=5e-19 Score=179.58 Aligned_cols=147 Identities=26% Similarity=0.413 Sum_probs=79.2
Q ss_pred cceeecccCCcCcCCCCC-CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQGF-ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 554 (871)
+..+.++.|...++|... ...++..+.++.+....+|+. ..+...|+.|++++|.+.++|++++.+..|..|+..+|.
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc
Confidence 344445555555544433 444555555555555555554 334555555555555555555555555555555555555
Q ss_pred CCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 555 LGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 555 i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
+.. |+.++++.+|..|++.+|+++.+|...-+++.|++|+...| .++.+|++ ++.+.+|.-|++..|.+
T Consensus 149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKI 218 (565)
T ss_pred cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhccc
Confidence 544 55555555555555555555555554444555555555554 45555555 45555555555555543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=3.8e-18 Score=173.23 Aligned_cols=259 Identities=21% Similarity=0.261 Sum_probs=204.6
Q ss_pred cceeecccCCcCcCCC-CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQ-GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 554 (871)
...+.++.|.+..+.. ...+..+.+|.+.++....+|+. .+.+..+..|+.+.|.++.+|+.++.+..|+.|+.+++.
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence 4456677777765543 34788888999998888888886 567888999999999999999999999999999999999
Q ss_pred CCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccc
Q 038510 555 LGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGL 633 (871)
Q Consensus 555 i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 633 (871)
+.+ +++++.+..|+.|+..+|++..+|.+++++.+|..|++.+| .++.+|++.+. ++.|++|+...|...
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L~------- 196 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLLE------- 196 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhhh-------
Confidence 877 78999999999999999999999999999999999999996 78889988555 999999997666543
Q ss_pred cchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccC-CCCCCCccceeEEEeccCCcccchh
Q 038510 634 DSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICLNE 712 (871)
Q Consensus 634 ~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~ 712 (871)
....+++.|.+|..|.+..+++..+| .+..++.|+.|.+..+..... ......++++..|++..+.....|+
T Consensus 197 ------tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 197 ------TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred ------cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence 34467888889999999888888888 566777788777654432211 2233345778888888887777787
Q ss_pred hHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCC
Q 038510 713 GHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNR 756 (871)
Q Consensus 713 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 756 (871)
.+. .+++|.+|+++++ .++.++..+ |++ +|+.|.+.+.+
T Consensus 270 e~c-lLrsL~rLDlSNN-~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 270 EIC-LLRSLERLDLSNN-DISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HHH-HhhhhhhhcccCC-ccccCCccc--ccc-eeeehhhcCCc
Confidence 764 3588999999774 444555443 888 88999888853
No 13
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.59 E-value=1.2e-15 Score=180.56 Aligned_cols=319 Identities=23% Similarity=0.253 Sum_probs=207.2
Q ss_pred cCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCC--CCCCCC-ccccccCCcEEEecccC-CCC-Ccc
Q 038510 486 ISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMH--LLPLPS-SLGLLQNLQTLCLNYCN-LGD-IAI 560 (871)
Q Consensus 486 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--i~~lp~-~i~~l~~Lr~L~L~~~~-i~~-~~~ 560 (871)
....|........|...+.++....++.. ...+.|++|-+.++. +..++. .+..+++||+|||++|. +.. |.+
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~ 590 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS 590 (889)
T ss_pred ccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH
Confidence 33455555667788888887776666664 245589999999986 555553 47889999999999987 556 889
Q ss_pred cCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhccc
Q 038510 561 IGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNA 640 (871)
Q Consensus 561 i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 640 (871)
|++|.+|+||++++|.+..+|.++++|++|.||++..+..+..+ +++...|++|++|.+...... .+..
T Consensus 591 I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~----------~~~~ 659 (889)
T KOG4658|consen 591 IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS----------NDKL 659 (889)
T ss_pred HhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccc----------cchh
Confidence 99999999999999999999999999999999999988776666 454677999999998765411 2344
Q ss_pred chhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcc
Q 038510 641 SLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKG 720 (871)
Q Consensus 641 ~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~ 720 (871)
.+.++.+|.+|+.+.+..... .+-..+..+..|.++...... .++.....+. ....+++
T Consensus 660 ~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~-------------------~~~~~~~~~~-~~~~l~~ 718 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSI-------------------EGCSKRTLIS-SLGSLGN 718 (889)
T ss_pred hHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhh-------------------cccccceeec-ccccccC
Confidence 667788888888887764433 222222233334332221110 0000001111 1123578
Q ss_pred cceEEeeccCCceeccccC---CCC-CCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccccccccccccc-
Q 038510 721 IEDLSLHGLLDMKNVLCEP---GRE-GFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGS- 795 (871)
Q Consensus 721 L~~L~L~~~~~~~~~~~~~---~~~-~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~- 795 (871)
|+.|.+.+|.......... ... .|++|..+.+.+|..+.... .....|+|+.|.+.+|+.+++.....
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~-------~~~f~~~L~~l~l~~~~~~e~~i~~~k 791 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT-------WLLFAPHLTSLSLVSCRLLEDIIPKLK 791 (889)
T ss_pred cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc-------hhhccCcccEEEEecccccccCCCHHH
Confidence 9999999887754332111 012 26788888888887655431 22457999999999998887763210
Q ss_pred ----CC--ccccCCCCeE-EEecCCCCCccCChhhhccCCcccEEEeccCcchHhHhhc
Q 038510 796 ----LT--AESFCKLKNI-RVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEVIFAA 847 (871)
Q Consensus 796 ----~~--~~~~~~L~~L-~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~ 847 (871)
.. .-.|+++..+ .+.+-+.+..+.... -..+.|+++.+..||++...+..
T Consensus 792 ~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 792 ALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred HhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 00 1123444444 244433333332211 12344999999999999888754
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.59 E-value=5.5e-17 Score=181.36 Aligned_cols=364 Identities=21% Similarity=0.211 Sum_probs=218.8
Q ss_pred cceeecccCCcCcCC--CCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEeccc
Q 038510 476 CTAISLIYSNISELP--QGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYC 553 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~ 553 (871)
+.++++..|.+-..| ....+-+|++|+++++....+|.. +..+.+|+.|.++.|.|.+.|.+++++.+|++|.|.+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 566666666655533 122455699999999988888876 56788999999999999999999999999999999999
Q ss_pred CCCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCC-------------------CCCCccChhhhhCCC
Q 038510 554 NLGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKC-------------------FELKVIPPNVISSLS 613 (871)
Q Consensus 554 ~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~-------------------~~l~~~p~~~i~~L~ 613 (871)
.+.. |.++..+++|++||+++|.+...|.-+..+..+..+..++| .....++.+ +..++
T Consensus 102 ~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~-i~~l~ 180 (1081)
T KOG0618|consen 102 RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID-IYNLT 180 (1081)
T ss_pred hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc-hhhhh
Confidence 9877 78899999999999999988877765555544444444333 111222222 22222
Q ss_pred CCcEEecccCCCCcccc---------------------ccccch---hcccchhhh---ccCCCCCeEEEeeccCCCCCc
Q 038510 614 RLEELYIGESPIQWGTV---------------------EGLDSE---RRNASLHEL---NHLSKLTSLEILIQDEKTIPS 666 (871)
Q Consensus 614 ~L~~L~l~~~~~~~~~~---------------------~~~~~~---~~~~~l~~L---~~L~~L~~L~i~~~~~~~~~~ 666 (871)
. .|++..|.+..... .+-... .....+..+ ..-.+|+.++++.+....+|.
T Consensus 181 ~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~ 258 (1081)
T KOG0618|consen 181 H--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE 258 (1081)
T ss_pred e--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchH
Confidence 2 24443333221000 000000 000000000 111255666666666666666
Q ss_pred chhhhccceeEEEEeee-----------------------cccCCCCCCCccceeEEEeccCCcccchhhHHhhhc----
Q 038510 667 DLLFFKILKRYRIFIGY-----------------------LWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLK---- 719 (871)
Q Consensus 667 ~l~~l~~L~~L~l~~~~-----------------------~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~---- 719 (871)
|+..+.+|+.+.+..+. .-..++.+..+..+..|++..+....+|+.+...+.
T Consensus 259 wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN 338 (1081)
T ss_pred HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence 66666666555543322 222245555577888888887776667765543321
Q ss_pred ---------------------ccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccc
Q 038510 720 ---------------------GIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLE 778 (871)
Q Consensus 720 ---------------------~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~ 778 (871)
.|+.|.+.++..... +++.+.++++||.|+|+++ .+..+++. ....++.|+
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~--c~p~l~~~~hLKVLhLsyN-rL~~fpas-----~~~kle~Le 410 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS--CFPVLVNFKHLKVLHLSYN-RLNSFPAS-----KLRKLEELE 410 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCccccc--chhhhccccceeeeeeccc-ccccCCHH-----HHhchHHhH
Confidence 233334433322222 2333477788888888874 44443221 334567778
Q ss_pred eeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHhHhhcCCCCcccCCCc
Q 038510 779 SLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEVIFAADRGDESSNNNT 858 (871)
Q Consensus 779 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~ 858 (871)
.|.++| ++|+.++. ....++.|+.|...+ ..+...| . +..++.|+.+++ +|.+|..+......
T Consensus 411 eL~LSG-NkL~~Lp~---tva~~~~L~tL~ahs-N~l~~fP--e-~~~l~qL~~lDl-S~N~L~~~~l~~~~-------- 473 (1081)
T KOG0618|consen 411 ELNLSG-NKLTTLPD---TVANLGRLHTLRAHS-NQLLSFP--E-LAQLPQLKVLDL-SCNNLSEVTLPEAL-------- 473 (1081)
T ss_pred HHhccc-chhhhhhH---HHHhhhhhHHHhhcC-Cceeech--h-hhhcCcceEEec-ccchhhhhhhhhhC--------
Confidence 888887 67777742 233567777765543 2455554 2 367899999999 58899888754332
Q ss_pred ccccccccceeeC
Q 038510 859 QVIELTQLRTLEL 871 (871)
Q Consensus 859 ~~~~~p~L~~l~L 871 (871)
.-|+||+|.|
T Consensus 474 ---p~p~LkyLdl 483 (1081)
T KOG0618|consen 474 ---PSPNLKYLDL 483 (1081)
T ss_pred ---CCcccceeec
Confidence 1278888875
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-16 Score=143.25 Aligned_cols=168 Identities=24% Similarity=0.429 Sum_probs=142.0
Q ss_pred CcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-CcccCC
Q 038510 485 NISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-IAIIGD 563 (871)
Q Consensus 485 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~~i~~ 563 (871)
++.+++....++++..|.+++|....+|++ +..+.+|.+|++++|+++++|.+|+.++.||.|++.-|++.. |..+|.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 345566667788888888888888888887 567899999999999999999999999999999999998766 788999
Q ss_pred CCCccEEEeeCCCcc--ccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccc
Q 038510 564 LKKLEILSLRGSDVE--KLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNAS 641 (871)
Q Consensus 564 l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 641 (871)
++-|++||+.+|++. .+|-.+..+..|+.|++++| ..+.+|++ ++++++||.|.+.+|... ..
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll-------------~l 165 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL-------------SL 165 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh-------------hC
Confidence 999999999998766 78888889999999999987 77888888 799999999998877542 23
Q ss_pred hhhhccCCCCCeEEEeeccCCCCCcch
Q 038510 642 LHELNHLSKLTSLEILIQDEKTIPSDL 668 (871)
Q Consensus 642 l~~L~~L~~L~~L~i~~~~~~~~~~~l 668 (871)
..+++.|+.|+.|+|.++....+|+.+
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhh
Confidence 467888999999999988888888765
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=2.3e-16 Score=176.41 Aligned_cols=108 Identities=15% Similarity=0.160 Sum_probs=77.3
Q ss_pred hhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccC
Q 038510 717 QLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSL 796 (871)
Q Consensus 717 ~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~ 796 (871)
.+.+|+.|+|+++.. +..+.. .+.+++.|+.|+|++ ++++.+++ ....+++|++|...+ +.+..+|
T Consensus 381 ~~~hLKVLhLsyNrL-~~fpas-~~~kle~LeeL~LSG-NkL~~Lp~------tva~~~~L~tL~ahs-N~l~~fP---- 446 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRL-NSFPAS-KLRKLEELEELNLSG-NKLTTLPD------TVANLGRLHTLRAHS-NQLLSFP---- 446 (1081)
T ss_pred cccceeeeeeccccc-ccCCHH-HHhchHHhHHHhccc-chhhhhhH------HHHhhhhhHHHhhcC-Cceeech----
Confidence 357899999987643 222222 237899999999999 57877753 334689999999987 6666664
Q ss_pred CccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcc
Q 038510 797 TAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQN 840 (871)
Q Consensus 797 ~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 840 (871)
....+|.|+.++++ |.+|+.+..... .--++|++|+++|...
T Consensus 447 e~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLS-CNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecc-cchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 23468999999997 678877633211 1227999999999886
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.8e-15 Score=135.11 Aligned_cols=154 Identities=26% Similarity=0.407 Sum_probs=136.8
Q ss_pred ccccceeecccCCcCcCCCCC-CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 473 LKVCTAISLIYSNISELPQGF-ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
...++++.++.|.+..+|... .+.+|+.|.+++|.+..+|.+ +++++.||.|+++-|.+..+|..++.++.|+.|||.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 457889999999998887665 899999999999999999987 688999999999999999999999999999999999
Q ss_pred ccCCCC---CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcc
Q 038510 552 YCNLGD---IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWG 628 (871)
Q Consensus 552 ~~~i~~---~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 628 (871)
+|++.+ |..+..+..|+-|++++|.++-+|..+++|++|+.|.++.| .+-.+|.+ ++.++.|++|++.+|.....
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~vl 188 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLTVL 188 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceeeec
Confidence 999865 67788888899999999999999999999999999999997 67778988 89999999999999887544
Q ss_pred c
Q 038510 629 T 629 (871)
Q Consensus 629 ~ 629 (871)
+
T Consensus 189 p 189 (264)
T KOG0617|consen 189 P 189 (264)
T ss_pred C
Confidence 3
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=4.4e-12 Score=147.37 Aligned_cols=252 Identities=18% Similarity=0.164 Sum_probs=137.2
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLG 556 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~ 556 (871)
..|+++.+.+..+|.... ++|+.|.+.+|....+|.. +++|++|++++|.++.+|.. ..+|++|++++|.+.
T Consensus 204 ~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL----PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC----CCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 345666666666665442 4677777777666666642 46777777777777777643 356777777777766
Q ss_pred CCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccch
Q 038510 557 DIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSE 636 (871)
Q Consensus 557 ~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 636 (871)
.++. ...+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. ..+|+.|++.+|.+..
T Consensus 276 ~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~--------- 336 (788)
T PRK15387 276 HLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS--------- 336 (788)
T ss_pred hhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc---------
Confidence 5332 224577777777777777752 466777777776 55555542 1345566666655421
Q ss_pred hcccchhhhccC-CCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHH
Q 038510 637 RRNASLHELNHL-SKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHI 715 (871)
Q Consensus 637 ~~~~~l~~L~~L-~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 715 (871)
+..+ .+|+.|+++.+.+..+|.. ..+|+.|.+..+. ...+|.
T Consensus 337 --------LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-----------------------L~~LP~--- 379 (788)
T PRK15387 337 --------LPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-----------------------LTSLPA--- 379 (788)
T ss_pred --------ccccccccceEecCCCccCCCCCC---Ccccceehhhccc-----------------------cccCcc---
Confidence 1111 3567777776666665542 2344444433221 111111
Q ss_pred hhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccccccccccccc
Q 038510 716 MQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGS 795 (871)
Q Consensus 716 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~ 795 (871)
.+.+|+.|+++++.. ..++. ..++|+.|+++++ .+..++ ..+.+|+.|.+++ +.++.+|..
T Consensus 380 -l~~~L~~LdLs~N~L-t~LP~-----l~s~L~~LdLS~N-~LssIP---------~l~~~L~~L~Ls~-NqLt~LP~s- 440 (788)
T PRK15387 380 -LPSGLKELIVSGNRL-TSLPV-----LPSELKELMVSGN-RLTSLP---------MLPSGLLSLSVYR-NQLTRLPES- 440 (788)
T ss_pred -cccccceEEecCCcc-cCCCC-----cccCCCEEEccCC-cCCCCC---------cchhhhhhhhhcc-CcccccChH-
Confidence 123556666655432 22221 1356666666664 233321 1133566666665 445555321
Q ss_pred CCccccCCCCeEEEecCC
Q 038510 796 LTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 796 ~~~~~~~~L~~L~l~~C~ 813 (871)
...+++|+.|++++++
T Consensus 441 --l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 441 --LIHLSSETTVNLEGNP 456 (788)
T ss_pred --HhhccCCCeEECCCCC
Confidence 2346666666666653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=2.9e-12 Score=149.94 Aligned_cols=217 Identities=17% Similarity=0.208 Sum_probs=112.4
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLG 556 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~ 556 (871)
..+.+.++.+..+|... .++++.|++.+|.+..+|..++ .+|++|++++|.++.+|..+. .+|+.|+|++|.+.
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccC
Confidence 44555555555555433 2456666666666666665543 356666776666666665443 35666677766665
Q ss_pred C-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccc
Q 038510 557 D-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDS 635 (871)
Q Consensus 557 ~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 635 (871)
. |..+. .+|++|++++|+++.+|..+. .+|++|++++| .++.+|.. +. ++|+.|++.+|.+...+
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~Lt~LP------ 320 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSLTALP------ 320 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCccccCC------
Confidence 5 33332 356667776666666665443 46666776665 55555543 22 35666666665543111
Q ss_pred hhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHH
Q 038510 636 ERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHI 715 (871)
Q Consensus 636 ~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 715 (871)
..+ .++|+.|.+..+....+|..+ .++|+.|.+..+.....+..+ .+++..|++.++....+|..+.
T Consensus 321 -------~~l--~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~ 387 (754)
T PRK15370 321 -------ETL--PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP 387 (754)
T ss_pred -------ccc--cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH
Confidence 001 135666666665555555544 245555555443211111111 1234444444444334444332
Q ss_pred hhhcccceEEeecc
Q 038510 716 MQLKGIEDLSLHGL 729 (871)
Q Consensus 716 ~~l~~L~~L~L~~~ 729 (871)
.+|+.|+++++
T Consensus 388 ---~sL~~LdLs~N 398 (754)
T PRK15370 388 ---AALQIMQASRN 398 (754)
T ss_pred ---HHHHHHhhccC
Confidence 24555555544
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.33 E-value=2.5e-11 Score=141.20 Aligned_cols=173 Identities=20% Similarity=0.164 Sum_probs=129.5
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
.+.+++.|++..|++..+|.. .++|++|++++|....+|.. .+.|+.|++++|.++.+|.. ...|+.|+++
T Consensus 220 l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 220 LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIF 290 (788)
T ss_pred hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECc
Confidence 345789999999999988863 68999999999988888752 46899999999999888763 3578899999
Q ss_pred ccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 552 YCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 552 ~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
+|+++.++. .+++|++|++++|+++.+|.. ..+|+.|++++| .++.+|.. ..+|+.|++++|.+...+
T Consensus 291 ~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l----p~~Lq~LdLS~N~Ls~LP-- 358 (788)
T PRK15387 291 GNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPTL----PSGLQELSVSDNQLASLP-- 358 (788)
T ss_pred CCccccccc--cccccceeECCCCccccCCCC---cccccccccccC-cccccccc----ccccceEecCCCccCCCC--
Confidence 999887443 257899999999999988863 346778888887 66777742 257899999988764221
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEee
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIG 682 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~ 682 (871)
.+ ..+|+.|.+..+.+..+|.. ..+|+.|++..+
T Consensus 359 ------------~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 359 ------------TL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGN 392 (788)
T ss_pred ------------CC--CcccceehhhccccccCccc---ccccceEEecCC
Confidence 01 13677777877777777653 246777777544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=9.7e-12 Score=145.57 Aligned_cols=226 Identities=15% Similarity=0.154 Sum_probs=164.8
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
.+..++.|++++|.+..+|... +++|++|.+.+|....+|..+. ..|+.|++++|.+..+|..+. .+|++|+++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 4567899999999999888654 4699999999988888887543 479999999999999988764 589999999
Q ss_pred ccCCCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccc
Q 038510 552 YCNLGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTV 630 (871)
Q Consensus 552 ~~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 630 (871)
+|++.. |..+. .+|++|++++|+++.+|..+. .+|++|++++| .+..+|.. + .++|+.|++.+|.+...+
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N-~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~LP- 341 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN-SLTALPET-L--PPGLKTLEAGENALTSLP- 341 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC-ccccCCcc-c--cccceeccccCCccccCC-
Confidence 999887 44443 589999999999999987543 57899999987 66777764 2 368899998888654211
Q ss_pred ccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccc
Q 038510 631 EGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICL 710 (871)
Q Consensus 631 ~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 710 (871)
..+ .++|+.|+++.+.+..+|..+ .++|+.|++..+.....++.+. ..+..|+++++....+
T Consensus 342 ------------~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~L 403 (754)
T PRK15370 342 ------------ASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRL 403 (754)
T ss_pred ------------hhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccC
Confidence 112 257889999988888787765 3678888887665333222221 3466677777766666
Q ss_pred hhhHHhh---hcccceEEeeccC
Q 038510 711 NEGHIMQ---LKGIEDLSLHGLL 730 (871)
Q Consensus 711 ~~~~~~~---l~~L~~L~L~~~~ 730 (871)
|.++... ++++..|.+.++.
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCC
Confidence 6655443 3566777776643
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=1.5e-09 Score=135.32 Aligned_cols=269 Identities=14% Similarity=0.174 Sum_probs=160.7
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccc------------cc-----------cc-
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNL------------FE-----------KS- 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------F~-----------~~- 205 (871)
...++.|....+.+-. ....+++.|+|++|.||||++.++......-.. |. ..
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~ 89 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQATNGH 89 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcc
Confidence 3456677665555543 245789999999999999999998754321000 10 00
Q ss_pred -c-------------hhhHHHHHHHHHHc-CCcEEEEEecCCCcc--Chh-hhccccCCCCCCcEEEEeecCcchhcc-c
Q 038510 206 -H-------------ETVRAGRLLERLKK-EKKILIILDDIWGGL--DLE-AIGIPLADDNSGCKVLLTARSQDVLSC-K 266 (871)
Q Consensus 206 -~-------------~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~--~~~-~l~~~l~~~~~gs~iivTtr~~~va~~-~ 266 (871)
. .......+...+.. +.+++|||||+...+ ... .+...+.....+.++|||||...-... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 90 CSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHh
Confidence 0 00112233344433 578999999996542 222 232222333456678899998421110 0
Q ss_pred -cCCcceeecc----CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhc
Q 038510 267 -MDCQQNFFVD----VLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELR 341 (871)
Q Consensus 267 -~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~ 341 (871)
.......++. +|+.+|+.++|....+.... .+...+|.+.|+|.|+++..++..++..... -......+.
T Consensus 170 l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~ 244 (903)
T PRK04841 170 LRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLA 244 (903)
T ss_pred HHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhc
Confidence 0112344555 99999999999877664332 3446789999999999999988777643210 011111111
Q ss_pred CCCCCCccchhhhhheeccc-ccccCChhhHHHHHHhhcccccchhhhHHHHhhcccccccccchHHHHHHHHHHHHHHH
Q 038510 342 RPSFRNISGTLEVAYKSIEL-SYNHLNREELKRTFLLIGYAFISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVDKLK 420 (871)
Q Consensus 342 ~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~lk~cfl~~s~fp~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~ 420 (871)
.. . ...+...+.- -++.||++ .+..+...|+++.++.+-+-... | . +...+.+++|.
T Consensus 245 ~~---~----~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~~~l~~~l~---~-------~----~~~~~~L~~l~ 302 (903)
T PRK04841 245 GI---N----ASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMNDALIVRVT---G-------E----ENGQMRLEELE 302 (903)
T ss_pred CC---C----chhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCCHHHHHHHc---C-------C----CcHHHHHHHHH
Confidence 00 0 1223333222 36799998 89999999999966643222111 1 0 12345788888
Q ss_pred Hhcccc-cC-CCccceehhHHHHHHHHHHh
Q 038510 421 KSCLLV-DG-NTSERFSMHDVVRDAAISIA 448 (871)
Q Consensus 421 ~~~l~~-~~-~~~~~~~~Hdlv~d~a~~~~ 448 (871)
.++++. +. +....|+.|++++++++...
T Consensus 303 ~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 303 RQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 899874 33 23457999999999998775
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=8.7e-12 Score=127.49 Aligned_cols=139 Identities=22% Similarity=0.395 Sum_probs=110.2
Q ss_pred CCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecc-cCCCCC--c
Q 038510 484 SNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNY-CNLGDI--A 559 (871)
Q Consensus 484 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~-~~i~~~--~ 559 (871)
.++.++|.... +....+.+..|.+..+|+..|+.++.||.|||+.|.|+.+ |+.+..|..|-.|-+-+ |+|+++ .
T Consensus 56 ~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 56 KGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 34456665442 3556778888999999999999999999999999999855 67888888877776655 789884 4
Q ss_pred ccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCC
Q 038510 560 IIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESP 624 (871)
Q Consensus 560 ~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~ 624 (871)
.+++|..|+.|.+.-|++.-++ ..++.|++|..|.+.+| .+..++.+.+..+.+++++.+-.+.
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 5889999999999888888776 45888999999999886 7777888777888888888876554
No 24
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.00 E-value=7.2e-09 Score=111.34 Aligned_cols=253 Identities=15% Similarity=0.089 Sum_probs=140.7
Q ss_pred ccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc---chhhHHHHHHHHHHcC
Q 038510 150 FMHFESRKSTFKEILDALS-----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS---HETVRAGRLLERLKKE 221 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~---~~~~~~~~l~~~l~~~ 221 (871)
...|+|+++.++++..++. ....+.+.++|++|+|||+||+.+++.....-.+... ............+ +
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~ 80 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNL--E 80 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhc--c
Confidence 3568999999999988886 2345678899999999999999999887643222111 1111222222233 2
Q ss_pred CcEEEEEecCCCccC--hhhhccccC-------------------CCCCCcEEEEeecCcchhcc-ccCCcceeeccCCC
Q 038510 222 KKILIILDDIWGGLD--LEAIGIPLA-------------------DDNSGCKVLLTARSQDVLSC-KMDCQQNFFVDVLN 279 (871)
Q Consensus 222 kr~LlvlDdv~~~~~--~~~l~~~l~-------------------~~~~gs~iivTtr~~~va~~-~~~~~~~~~l~~L~ 279 (871)
...++++||+..... .+.+...+. ...+.+-|..||+...+... .......+.+++++
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~ 160 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYT 160 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCC
Confidence 456889999865321 111111100 01123445567776544321 11224568999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCccchhhhhheec
Q 038510 280 EKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPSFRNISGTLEVAYKSI 359 (871)
Q Consensus 280 ~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l 359 (871)
.++..+++.+.+..... .--.+....|++.|+|.|-.+..++..+ |.... .... ..-. ......+...+
T Consensus 161 ~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~-~~it-~~~v~~~l~~l 229 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQ-KIIN-RDIALKALEML 229 (305)
T ss_pred HHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCC-CCcC-HHHHHHHHHHh
Confidence 99999999988763221 1224567889999999997665555432 11110 0000 0000 00112223335
Q ss_pred ccccccCChhhHHHHHH-hhcccc--cchhhhHHHHhhcccccccccchHHHHHHHHHHHH-HHHHhcccccC
Q 038510 360 ELSYNHLNREELKRTFL-LIGYAF--ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVD-KLKKSCLLVDG 428 (871)
Q Consensus 360 ~~sy~~L~~~~lk~cfl-~~s~fp--~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~~ 428 (871)
...|..++++ -+.-+. ..+.++ .+..+++.... |- . .......++ .|++.+|+...
T Consensus 230 ~~~~~~l~~~-~~~~L~al~~~~~~~~~~~~~ia~~l---g~-----~----~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 230 MIDELGLDEI-DRKLLSVLIEQFQGGPVGLKTLAAAL---GE-----D----ADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CCCCCCCCHH-HHHHHHHHHHHhCCCcccHHHHHHHh---CC-----C----cchHHHhhhHHHHHcCCcccC
Confidence 6778888887 454443 445555 34433333221 10 1 123344566 58889999644
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=3.6e-11 Score=128.46 Aligned_cols=190 Identities=22% Similarity=0.276 Sum_probs=156.7
Q ss_pred ccceeecccCCcCcCCCCC-CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEeccc
Q 038510 475 VCTAISLIYSNISELPQGF-ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYC 553 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~ 553 (871)
.....+++.|.+.++|... .|..|.++.+..|.+..+|.. ..++..|.+|+|+.|+++.+|..++.|+ |+.|-+++|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 3456677788888888655 677888888888888888876 5789999999999999999999988876 899999999
Q ss_pred CCCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccc
Q 038510 554 NLGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEG 632 (871)
Q Consensus 554 ~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 632 (871)
+++. |..|+.+.+|..||.+.|.+..+|+.++++.+|+.|+++.| .+..+|.+ +..| .|..|++++|.+...+
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~E-l~~L-pLi~lDfScNkis~iP--- 227 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEE-LCSL-PLIRLDFSCNKISYLP--- 227 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHH-HhCC-ceeeeecccCceeecc---
Confidence 9988 78899999999999999999999999999999999999997 77888988 5655 4889999998875433
Q ss_pred ccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhcc---ceeEEEEee
Q 038510 633 LDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKI---LKRYRIFIG 682 (871)
Q Consensus 633 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~---L~~L~l~~~ 682 (871)
..+.+|+.|+.|.+.+|...+-|+.+....+ .+.|++..|
T Consensus 228 ----------v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 ----------VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ----------hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 4588999999999999999888888743333 344555444
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.96 E-value=5.5e-09 Score=112.90 Aligned_cols=254 Identities=12% Similarity=0.063 Sum_probs=144.8
Q ss_pred CCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc---chhhHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALS-----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS---HETVRAGRLLERLK 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~---~~~~~~~~l~~~l~ 219 (871)
.....|+|+++.++.+..++. ....+.+.|+|++|+||||+|+.+++.....-.+... ........+...+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~~~l~~l~ 101 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLAAILTNLE 101 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHHHHHHhcc
Confidence 445679999999998877765 2335678899999999999999999987653222211 11122233333332
Q ss_pred cCCcEEEEEecCCCcc--Chhhhccc---------cCC----------CCCCcEEEEeecCcchhcc-ccCCcceeeccC
Q 038510 220 KEKKILIILDDIWGGL--DLEAIGIP---------LAD----------DNSGCKVLLTARSQDVLSC-KMDCQQNFFVDV 277 (871)
Q Consensus 220 ~~kr~LlvlDdv~~~~--~~~~l~~~---------l~~----------~~~gs~iivTtr~~~va~~-~~~~~~~~~l~~ 277 (871)
+.-++++||+.... ..+.+... +.. -.+.+-|..||+...+... .......+++++
T Consensus 102 --~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~ 179 (328)
T PRK00080 102 --EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEF 179 (328)
T ss_pred --cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCC
Confidence 45688999986542 11111100 000 0123445567775544321 112245789999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcc-chhhhhh
Q 038510 278 LNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPSFRNIS-GTLEVAY 356 (871)
Q Consensus 278 L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~-~~~~~~~ 356 (871)
++.++..+++.+.+..... .--.+....|++.|+|.|-.+..+...+. .|....+ . ..+. .......
T Consensus 180 ~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~---~---~~I~~~~v~~~l 247 (328)
T PRK00080 180 YTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKG---D---GVITKEIADKAL 247 (328)
T ss_pred CCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcC---C---CCCCHHHHHHHH
Confidence 9999999999988764322 12245788999999999965544444321 1211110 0 0111 1123445
Q ss_pred eecccccccCChhhHHHHHH-hhcccc--cchhhhHHHHhhcccccccccchHHHHHHHHHHHH-HHHHhcccccC
Q 038510 357 KSIELSYNHLNREELKRTFL-LIGYAF--ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVD-KLKKSCLLVDG 428 (871)
Q Consensus 357 ~~l~~sy~~L~~~~lk~cfl-~~s~fp--~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~~ 428 (871)
..+...|..|++. .+.-+. ....|+ .+..+.+.... | ...+.++ +.++ .|++.+|++..
T Consensus 248 ~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~~~~a~~l---g-----~~~~~~~----~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 248 DMLGVDELGLDEM-DRKYLRTIIEKFGGGPVGLDTLAAAL---G-----EERDTIE----DVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHhCCCcCCCCHH-HHHHHHHHHHHcCCCceeHHHHHHHH---C-----CCcchHH----HHhhHHHHHcCCcccC
Confidence 6667788889887 455553 566666 44444443221 0 1122222 3345 67788888654
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.92 E-value=5.1e-09 Score=107.91 Aligned_cols=167 Identities=22% Similarity=0.289 Sum_probs=94.1
Q ss_pred cccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccc----cc---c---------------------
Q 038510 153 FESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNL----FE---K--------------------- 204 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~---~--------------------- 204 (871)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..+.... +. .
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999988776789999999999999999999987643210 00 0
Q ss_pred -------------------cchhhHHHHHHHHHHc-CCcEEEEEecCCCcc-Ch---h----hhcccc---CCCCCCcEE
Q 038510 205 -------------------SHETVRAGRLLERLKK-EKKILIILDDIWGGL-DL---E----AIGIPL---ADDNSGCKV 253 (871)
Q Consensus 205 -------------------~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~-~~---~----~l~~~l---~~~~~gs~i 253 (871)
.........+.+.+.+ +++++||+||+.... .. . .+...+ ....+.+ +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 159 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-I 159 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-E
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-E
Confidence 0001123344444443 346999999997665 11 1 122222 1233333 4
Q ss_pred EEeecCcchhc-------cccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 254 LLTARSQDVLS-------CKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 254 ivTtr~~~va~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
|+++-...+.. ...+....+.+++|+.+++++++...+.....-+.-.+..++|...+||.|..|..
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44443332221 12233345999999999999999987643311122345679999999999988764
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.8e-09 Score=103.03 Aligned_cols=106 Identities=22% Similarity=0.354 Sum_probs=32.1
Q ss_pred CCCcceEEEecCCCCCCCCCccc-cccCCcEEEecccCCCCCcccCCCCCccEEEeeCCCccccchhhc-CCCCCCEEeC
Q 038510 518 GMTGLKVLDFTEMHLLPLPSSLG-LLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMG-QLTQLRLLDL 595 (871)
Q Consensus 518 ~l~~Lr~L~l~~~~i~~lp~~i~-~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~-~L~~L~~L~l 595 (871)
+...++.|+|+++.|+.+. .++ .+.+|+.|++++|.|+.++.+..+++|++|++++|.|+.++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 4445677777777766553 344 466777777777777776667777777777777777777655443 5677777777
Q ss_pred CCCCCCCccCh-hhhhCCCCCcEEecccCCC
Q 038510 596 SKCFELKVIPP-NVISSLSRLEELYIGESPI 625 (871)
Q Consensus 596 ~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~ 625 (871)
++| .+..+.. ..+..+++|+.|++.+|++
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 765 3333221 1255666777777766654
No 29
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.86 E-value=7.2e-08 Score=101.63 Aligned_cols=156 Identities=15% Similarity=0.184 Sum_probs=95.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccc---------c--------------ccc---hhhHHHHHH----HHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLF---------E--------------KSH---ETVRAGRLL----ERLK 219 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------~--------------~~~---~~~~~~~l~----~~l~ 219 (871)
...+++.|+|++|+||||+++.+++........ + ... .......+. ....
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 445689999999999999999999876522111 0 000 011122222 2233
Q ss_pred cCCcEEEEEecCCCcc--Chhhhcccc---CCCCCCcEEEEeecCcch---h-----ccccCCcceeeccCCCHHHHHHH
Q 038510 220 KEKKILIILDDIWGGL--DLEAIGIPL---ADDNSGCKVLLTARSQDV---L-----SCKMDCQQNFFVDVLNEKEAWSL 286 (871)
Q Consensus 220 ~~kr~LlvlDdv~~~~--~~~~l~~~l---~~~~~gs~iivTtr~~~v---a-----~~~~~~~~~~~l~~L~~~~~~~L 286 (871)
.++++++|+||+|... .++.+.... .++.....|++|....-. . .........+.+++++.+|..++
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 5688999999998763 344443211 112222344555543211 0 00112245688999999999999
Q ss_pred HHHHhCCC---CCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 038510 287 FRKMTGDC---IENGELKSVATEIVKECAGLPIAIVPVARAL 325 (871)
Q Consensus 287 f~~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 325 (871)
+...+... ....-..+..+.|++.++|.|..|..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 98776421 1122235789999999999999999999876
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=2.3e-09 Score=102.39 Aligned_cols=131 Identities=23% Similarity=0.239 Sum_probs=39.5
Q ss_pred CcCCCCCCCCCceEEEecCCCCCccCccccc-CCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCc-cc-CC
Q 038510 487 SELPQGFECPQLKYFRIGNDPSLRIPDNFFT-GMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIA-II-GD 563 (871)
Q Consensus 487 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~-~i-~~ 563 (871)
+..+...++.+++.|.+.++.+..+.. +. .+.+|++|++++|.|+.++ .+..+++|++|++++|+|+.+. .+ ..
T Consensus 10 ~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 10 EQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN 86 (175)
T ss_dssp --------------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred ccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence 333333444455555555555444432 22 3566677777777766654 4566677777777777766642 23 34
Q ss_pred CCCccEEEeeCCCccccc--hhhcCCCCCCEEeCCCCCCCCccC---hhhhhCCCCCcEEecc
Q 038510 564 LKKLEILSLRGSDVEKLV--GEMGQLTQLRLLDLSKCFELKVIP---PNVISSLSRLEELYIG 621 (871)
Q Consensus 564 l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~~p---~~~i~~L~~L~~L~l~ 621 (871)
+++|++|++++|+|..+- ..+..+++|++|++.+|+. ...+ ..++..+++|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence 667777777777665443 2355667777777776632 2222 2346677777777743
No 31
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.6e-08 Score=103.50 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=106.6
Q ss_pred CCccccccchHHH---HHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc----ccchhhH----HHHHHH
Q 038510 148 QDFMHFESRKSTF---KEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----KSHETVR----AGRLLE 216 (871)
Q Consensus 148 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~~~~~----~~~l~~ 216 (871)
.....++|.+..+ .-|..++..+.+...-+||++|+||||||+.+...... .|. ..+.... +++-++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~--~f~~~sAv~~gvkdlr~i~e~a~~ 98 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNA--AFEALSAVTSGVKDLREIIEEARK 98 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCC--ceEEeccccccHHHHHHHHHHHHH
Confidence 3344566666544 23455556788999999999999999999999987665 365 1222222 233333
Q ss_pred HHHcCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE--eecCcchh--ccccCCcceeeccCCCHHHHHHHHHHH
Q 038510 217 RLKKEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL--TARSQDVL--SCKMDCQQNFFVDVLNEKEAWSLFRKM 290 (871)
Q Consensus 217 ~l~~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--Ttr~~~va--~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 290 (871)
....+++.+|++|.|..- .+-+.+ +|.-..|.-|+| ||.+.... ........++++++|+.+|-.+++.+.
T Consensus 99 ~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 99 NRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred HHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 334478999999999755 333333 445567776666 77776443 223455689999999999999999884
Q ss_pred hCCCC-C----Cc-hhHHHHHHHHHHcCCchh
Q 038510 291 TGDCI-E----NG-ELKSVATEIVKECAGLPI 316 (871)
Q Consensus 291 ~~~~~-~----~~-~l~~~~~~I~~~c~GlPL 316 (871)
+-... . .. --+++-+-|+..++|---
T Consensus 176 ~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 176 LLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 42111 1 11 123466678888888653
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.81 E-value=2.2e-10 Score=117.36 Aligned_cols=129 Identities=24% Similarity=0.336 Sum_probs=113.8
Q ss_pred ccccccceeecccCCcCcCCCCC--CCCCceEEEecCCCCCccCcccccCCCcceEEEecC-CCCCCCCC-ccccccCCc
Q 038510 471 EKLKVCTAISLIYSNISELPQGF--ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTE-MHLLPLPS-SLGLLQNLQ 546 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~i~~lp~-~i~~l~~Lr 546 (871)
+.+.....+.+..|.++.+|... .+++||.|++++|.+..+.+..|.+++.|..|-+.+ |.|+.+|. .+++|..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 55667788889999999999765 899999999999999999999999999888887766 89999995 589999999
Q ss_pred EEEecccCCCCC--cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCC
Q 038510 547 TLCLNYCNLGDI--AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCF 599 (871)
Q Consensus 547 ~L~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~ 599 (871)
-|.+.-|.+..+ ..+..+++|..|.+.+|.+..++. .+..+..++++++..|.
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 999999998773 668899999999999999999997 68899999999988764
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=1.3e-09 Score=118.14 Aligned_cols=63 Identities=24% Similarity=0.287 Sum_probs=30.6
Q ss_pred ccCCCcceEEEecCCCCC-----CCCCccccccCCcEEEecccCCCC--------CcccCCCCCccEEEeeCCCcc
Q 038510 516 FTGMTGLKVLDFTEMHLL-----PLPSSLGLLQNLQTLCLNYCNLGD--------IAIIGDLKKLEILSLRGSDVE 578 (871)
Q Consensus 516 ~~~l~~Lr~L~l~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~--------~~~i~~l~~L~~L~l~~~~i~ 578 (871)
|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. +..+.++++|+.|++++|.+.
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 444555666666666553 233344445555566555554431 122334445555555554443
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.78 E-value=3.6e-10 Score=121.04 Aligned_cols=188 Identities=21% Similarity=0.300 Sum_probs=155.7
Q ss_pred eeecccCCcCcCCCCC---CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccC
Q 038510 478 AISLIYSNISELPQGF---ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 478 ~lsl~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 554 (871)
++.+++..++.+|... .+..-...+++.|....+|.. +..+-.|..+.|..|.+..+|..+++|..|.||+|+.|.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 4555555666665432 344445567777888888876 566888999999999999999999999999999999999
Q ss_pred CCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccc
Q 038510 555 LGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGL 633 (871)
Q Consensus 555 i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 633 (871)
+.- |..++.|+ |+.|-+++|+++.+|..++.+.+|.+|+.+.| .+..+|.. ++.+.+|+.|.+..|....
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~------ 203 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLED------ 203 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhh------
Confidence 987 67787777 99999999999999999999999999999997 77888988 8999999999988876532
Q ss_pred cchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeee
Q 038510 634 DSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGY 683 (871)
Q Consensus 634 ~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~ 683 (871)
...++..| .|..|+++||.+..+|..+..+++|+.|.+..+.
T Consensus 204 -------lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 204 -------LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred -------CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 34667755 5889999999999999999999999999886543
No 35
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.77 E-value=5.5e-08 Score=108.36 Aligned_cols=170 Identities=14% Similarity=0.178 Sum_probs=108.6
Q ss_pred CccccccchHHHHH---HHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc----ccchhhHHHHHHHH----
Q 038510 149 DFMHFESRKSTFKE---ILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----KSHETVRAGRLLER---- 217 (871)
Q Consensus 149 ~~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~~~~~~~~l~~~---- 217 (871)
....++|++..++. +..++..+..+.+.++|++|+||||+|+.+++.... .|. .......+..+.+.
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~--~~~~l~a~~~~~~~ir~ii~~~~~~ 87 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA--PFEALSAVTSGVKDLREVIEEARQR 87 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC--CEEEEecccccHHHHHHHHHHHHHh
Confidence 34568898887666 888887777888999999999999999999987654 243 11111222222222
Q ss_pred HHcCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEE--eecCcc--hhccccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 218 LKKEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLL--TARSQD--VLSCKMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 218 l~~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv--Ttr~~~--va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
...+++.+|++|+++... ..+.+...+. .|..++| ||.+.. +..........+.+++++.++.+.++.+.+
T Consensus 88 ~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 88 RSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred hhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence 223577899999998653 3344433332 2444444 444432 211122334789999999999999999876
Q ss_pred CCCC-CC-chhHHHHHHHHHHcCCchhHHHHHHH
Q 038510 292 GDCI-EN-GELKSVATEIVKECAGLPIAIVPVAR 323 (871)
Q Consensus 292 ~~~~-~~-~~l~~~~~~I~~~c~GlPLai~~~~~ 323 (871)
.... .. .-..+..+.|++.|+|.|..+.-+..
T Consensus 165 ~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 165 EDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4211 11 22356678899999999876654443
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.76 E-value=2e-07 Score=111.86 Aligned_cols=275 Identities=18% Similarity=0.195 Sum_probs=169.8
Q ss_pred cccchHHHHHHHHHhc---CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc-c-----ccc--------------------
Q 038510 153 FESRKSTFKEILDALS---NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-N-----LFE-------------------- 203 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~-----~F~-------------------- 203 (871)
++||+.+++.|...+. .+...++.+.|..|+|||+|+++|......+ + .|+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6799999999999887 4567799999999999999999999876554 1 222
Q ss_pred ---------------------------------------c----------cchhhH-----HHHHHHHHHcCCcEEEEEe
Q 038510 204 ---------------------------------------K----------SHETVR-----AGRLLERLKKEKKILIILD 229 (871)
Q Consensus 204 ---------------------------------------~----------~~~~~~-----~~~l~~~l~~~kr~LlvlD 229 (871)
. .....+ ...+.....+.++..+|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 0 000000 1122233345679999999
Q ss_pred cC-CCccChhhhccccCC-CC----CCcEEEE--eecCc-chhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchh
Q 038510 230 DI-WGGLDLEAIGIPLAD-DN----SGCKVLL--TARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGEL 300 (871)
Q Consensus 230 dv-~~~~~~~~l~~~l~~-~~----~gs~iiv--Ttr~~-~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l 300 (871)
|+ |-+..--.+...+.. .. ....|.. |.+.. ............+.+.||+..+...+.....+..... .
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL--P 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--c
Confidence 99 655322111111111 10 1112333 22222 1112233445789999999999999999988753322 2
Q ss_pred HHHHHHHHHHcCCchhHHHHHHHHHhcC-------ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHH
Q 038510 301 KSVATEIVKECAGLPIAIVPVARALINK-------RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKR 373 (871)
Q Consensus 301 ~~~~~~I~~~c~GlPLai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~ 373 (871)
.+..+.|++|..|.|+-+..+-..+... +...|..-..++... +..+.+.+.+..-.+.||.. .++
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv~~l~~rl~kL~~~-t~~ 312 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVVEFLAARLQKLPGT-TRE 312 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHHHHHHHHHhcCCHH-HHH
Confidence 4568889999999999999999988742 344554433332221 12234666788889999998 799
Q ss_pred HHHhhcccc-cchhhhHHHHhhcccccccccchHHHHHHHHHHHHHHHHhccccc-----CCCcc--c-e-ehhHHHHHH
Q 038510 374 TFLLIGYAF-ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVDKLKKSCLLVD-----GNTSE--R-F-SMHDVVRDA 443 (871)
Q Consensus 374 cfl~~s~fp-~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~-----~~~~~--~-~-~~Hdlv~d~ 443 (871)
..-..|++- .|+.+.|...|-. .....+..+.+.|....++.. .+... . | -.||.+++.
T Consensus 313 Vl~~AA~iG~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqa 381 (849)
T COG3899 313 VLKAAACIGNRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQA 381 (849)
T ss_pred HHHHHHHhCccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHH
Confidence 999999998 8888777665532 112233344454444444421 11111 1 3 358888887
Q ss_pred HHHH
Q 038510 444 AISI 447 (871)
Q Consensus 444 a~~~ 447 (871)
|-..
T Consensus 382 aY~~ 385 (849)
T COG3899 382 AYNL 385 (849)
T ss_pred Hhcc
Confidence 7543
No 37
>PF05729 NACHT: NACHT domain
Probab=98.76 E-value=5.2e-08 Score=94.37 Aligned_cols=119 Identities=24% Similarity=0.337 Sum_probs=77.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhccc----cc-----------ccchh-hH--------------HHH-HHHHHHcC
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNL----FE-----------KSHET-VR--------------AGR-LLERLKKE 221 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~-----------~~~~~-~~--------------~~~-l~~~l~~~ 221 (871)
+++.|+|.+|+||||+++.++.+...... +. ..... .. ... ....+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999999987765432 11 00000 00 111 22233457
Q ss_pred CcEEEEEecCCCccC---------hhhhcc-ccCC-CCCCcEEEEeecCcchh--ccccCCcceeeccCCCHHHHHHHHH
Q 038510 222 KKILIILDDIWGGLD---------LEAIGI-PLAD-DNSGCKVLLTARSQDVL--SCKMDCQQNFFVDVLNEKEAWSLFR 288 (871)
Q Consensus 222 kr~LlvlDdv~~~~~---------~~~l~~-~l~~-~~~gs~iivTtr~~~va--~~~~~~~~~~~l~~L~~~~~~~Lf~ 288 (871)
+++++|+|+++.... +..+.. .+.. ..++.+|+||+|..... .........+++.++++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 899999999976532 222222 2222 35689999999997762 2223344689999999999999998
Q ss_pred HHh
Q 038510 289 KMT 291 (871)
Q Consensus 289 ~~~ 291 (871)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 765
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.73 E-value=1.6e-09 Score=106.89 Aligned_cols=134 Identities=19% Similarity=0.266 Sum_probs=111.1
Q ss_pred CCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCC
Q 038510 519 MTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 519 l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 598 (871)
.+.|..+||++|.|+.+.+++.-++.+|.|++++|+|..+.++..|++|+.||+++|.++++--.-.+|-|.++|.+..|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 46899999999999999889888999999999999999988899999999999999988887666668889999999986
Q ss_pred CCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCc
Q 038510 599 FELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPS 666 (871)
Q Consensus 599 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~ 666 (871)
.+..+.. +++|=+|..|++.+|.++.. .....+++|+.|..+.+.++....++.
T Consensus 363 -~iE~LSG--L~KLYSLvnLDl~~N~Ie~l-----------deV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 363 -KIETLSG--LRKLYSLVNLDLSSNQIEEL-----------DEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hHhhhhh--hHhhhhheeccccccchhhH-----------HHhcccccccHHHHHhhcCCCccccch
Confidence 6666643 78888999999998876422 234567888888888888877666654
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=3.4e-09 Score=115.02 Aligned_cols=158 Identities=19% Similarity=0.138 Sum_probs=103.7
Q ss_pred CCCCceEEEecCCCCCc-----cCcccccCCCcceEEEecCCCCCC-------CCCccccccCCcEEEecccCCCC--Cc
Q 038510 494 ECPQLKYFRIGNDPSLR-----IPDNFFTGMTGLKVLDFTEMHLLP-------LPSSLGLLQNLQTLCLNYCNLGD--IA 559 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~Lr~L~l~~~~i~~-------lp~~i~~l~~Lr~L~L~~~~i~~--~~ 559 (871)
.+++|+.|.+.++.... ++. .+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 45668999998866522 222 35567779999999887663 23446678899999999998863 33
Q ss_pred ccCCC---CCccEEEeeCCCcc-----ccchhhcCC-CCCCEEeCCCCCCCC----ccChhhhhCCCCCcEEecccCCCC
Q 038510 560 IIGDL---KKLEILSLRGSDVE-----KLVGEMGQL-TQLRLLDLSKCFELK----VIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 560 ~i~~l---~~L~~L~l~~~~i~-----~lp~~i~~L-~~L~~L~l~~~~~l~----~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
.+..+ ++|++|++++|.+. .+...+..+ ++|+.|++++|.... .++.. +..+++|++|++.+|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCc
Confidence 34444 44999999998776 233456667 889999999884331 12222 566778899988887654
Q ss_pred ccccccccchhcccchhhhccCCCCCeEEEeeccC
Q 038510 627 WGTVEGLDSERRNASLHELNHLSKLTSLEILIQDE 661 (871)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~ 661 (871)
... .......+..+++|+.|++..+..
T Consensus 179 ~~~--------~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 179 DAG--------IRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred hHH--------HHHHHHHHHhCCCCCEEeccCCcc
Confidence 211 111223455566788887775543
No 40
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.70 E-value=6.5e-07 Score=100.05 Aligned_cols=210 Identities=16% Similarity=0.184 Sum_probs=122.4
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-ccc--------c-------------
Q 038510 151 MHFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFE--------K------------- 204 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~--------~------------- 204 (871)
..+.||+++++++...+. ....+.+.|+|++|+|||++++.++++..... .+. .
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 468899999999988874 23446688999999999999999999875432 111 0
Q ss_pred --c--------chhhHHHHHHHHHHc-CCcEEEEEecCCCcc---Chh---hhccccCCCCCCcE--EEEeecCcchhcc
Q 038510 205 --S--------HETVRAGRLLERLKK-EKKILIILDDIWGGL---DLE---AIGIPLADDNSGCK--VLLTARSQDVLSC 265 (871)
Q Consensus 205 --~--------~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~---~~~---~l~~~l~~~~~gs~--iivTtr~~~va~~ 265 (871)
. ........+.+.+.+ ++..+||||+++... ..+ .+...+ ....+++ +|.++....+...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhh
Confidence 0 011223344444443 456899999998643 122 222211 1223334 5666655433210
Q ss_pred ------ccCCcceeeccCCCHHHHHHHHHHHhCC-----CCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh-----cC-
Q 038510 266 ------KMDCQQNFFVDVLNEKEAWSLFRKMTGD-----CIENGELKSVATEIVKECAGLPIAIVPVARALI-----NK- 328 (871)
Q Consensus 266 ------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~-----~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~-----~~- 328 (871)
..-....+.+++++.++..+++..++.. ...+..++.+++......|..+.|+.++-.+.. +.
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~ 268 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSR 268 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCC
Confidence 0112356899999999999999887631 112223333344343335667888877754432 11
Q ss_pred --ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHHHHHh
Q 038510 329 --RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKRTFLL 377 (871)
Q Consensus 329 --~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~ 377 (871)
+.++...+++.... ....-.+..||.+ +..|++
T Consensus 269 ~I~~~~v~~a~~~~~~--------------~~~~~~~~~L~~~--~k~~L~ 303 (394)
T PRK00411 269 KVTEEDVRKAYEKSEI--------------VHLSEVLRTLPLH--EKLLLR 303 (394)
T ss_pred CcCHHHHHHHHHHHHH--------------HHHHHHHhcCCHH--HHHHHH
Confidence 56677666665411 1123357789987 444443
No 41
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.68 E-value=4.8e-07 Score=102.75 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=160.7
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---------------ccc-----------
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---------------LFE----------- 203 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------~F~----------- 203 (871)
+...+-|....+.+.+ ..+.+.+.|..++|.|||||+-+.......+. .|-
T Consensus 18 ~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~ 94 (894)
T COG2909 18 PDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQAT 94 (894)
T ss_pred cccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhC
Confidence 3445566554444443 24789999999999999999999975222110 111
Q ss_pred ---------------ccchhhHHHHHHHHHHc-CCcEEEEEecCCCcc--Chh-hhccccCCCCCCcEEEEeecCcchhc
Q 038510 204 ---------------KSHETVRAGRLLERLKK-EKKILIILDDIWGGL--DLE-AIGIPLADDNSGCKVLLTARSQDVLS 264 (871)
Q Consensus 204 ---------------~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~--~~~-~l~~~l~~~~~gs~iivTtr~~~va~ 264 (871)
..+.....+.+...+.. .++..+||||-.-.. ..+ .+...+.....+-..|||||+..-..
T Consensus 95 p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~ 174 (894)
T COG2909 95 PTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLG 174 (894)
T ss_pred ccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCc
Confidence 00111223344444432 467899999964331 222 22222334456778999999964210
Q ss_pred --cccCCcceeecc----CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcC-ChhHHHHHH
Q 038510 265 --CKMDCQQNFFVD----VLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINK-RLFEWKDSL 337 (871)
Q Consensus 265 --~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-~~~~w~~~~ 337 (871)
...-.+...++. .++.+|+-++|....+...+.. -.+.+.+...|-+-|+..++=.+++. +.+.--..+
T Consensus 175 la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~----~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L 250 (894)
T COG2909 175 LARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAA----DLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL 250 (894)
T ss_pred ccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChH----HHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc
Confidence 011112333433 4889999999988765544433 36779999999999999888877732 322222211
Q ss_pred HHhcCCCCCCccchhhhhhee-cccccccCChhhHHHHHHhhcccccchhhhHHHHhhcccccccccchHHHHHHHHHHH
Q 038510 338 LELRRPSFRNISGTLEVAYKS-IELSYNHLNREELKRTFLLIGYAFISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLV 416 (871)
Q Consensus 338 ~~l~~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~ 416 (871)
+- ..+.+..- ..=-++.||++ +|..++-||+++.+.- +|+..-. .++.+...+
T Consensus 251 sG-----------~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~f~~-eL~~~Lt-------------g~~ng~amL 304 (894)
T COG2909 251 SG-----------AASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSRFND-ELCNALT-------------GEENGQAML 304 (894)
T ss_pred cc-----------hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHHhhH-HHHHHHh-------------cCCcHHHHH
Confidence 10 00111000 01125789998 9999999999984332 2222111 123455679
Q ss_pred HHHHHhcccc-c-CCCccceehhHHHHHHHHHHhcC
Q 038510 417 DKLKKSCLLV-D-GNTSERFSMHDVVRDAAISIASG 450 (871)
Q Consensus 417 ~~L~~~~l~~-~-~~~~~~~~~Hdlv~d~a~~~~~~ 450 (871)
++|.+++++. + .+....|+.|.+..||.+.....
T Consensus 305 e~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 305 EELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999999984 2 35677899999999999877655
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.67 E-value=2.7e-09 Score=105.34 Aligned_cols=125 Identities=20% Similarity=0.258 Sum_probs=89.5
Q ss_pred cccccceeecccCCcCcCCCCC-CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEe
Q 038510 472 KLKVCTAISLIYSNISELPQGF-ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCL 550 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L 550 (871)
-++.+..+++++|.+..+.+.. -.|++|.|+++.|.+..+.. +..+.+|..|||++|.++++-.+-.+|-|.+.|.|
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 3556777888888887776655 46777777777777666554 56677777777777777766655566677777777
Q ss_pred cccCCCCCcccCCCCCccEEEeeCCCccccc--hhhcCCCCCCEEeCCCC
Q 038510 551 NYCNLGDIAIIGDLKKLEILSLRGSDVEKLV--GEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 551 ~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~ 598 (871)
.+|.|+.++.+++|++|.+||+++|+|..+- .+|++|+.|++|.+.+|
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 7777777777777777777777777777654 45777777777777765
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.65 E-value=3.3e-07 Score=93.39 Aligned_cols=147 Identities=17% Similarity=0.167 Sum_probs=91.0
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cccccch-hhHHHHHHHHHHcCCcEEEEEecCCCc---cChhh-hc
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFEKSHE-TVRAGRLLERLKKEKKILIILDDIWGG---LDLEA-IG 241 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~~-~~~~~~l~~~l~~~kr~LlvlDdv~~~---~~~~~-l~ 241 (871)
...+.+.++|++|+|||+|++.+++....+. .|-.... ......+.+.+. +.-+|||||+|.. ..|+. +.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~~~~l~ 114 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLE--QQDLVCLDDLQAVIGNEEWELAIF 114 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcc--cCCEEEEeChhhhcCChHHHHHHH
Confidence 3456789999999999999999999864321 1221111 111123333443 3359999999874 44553 22
Q ss_pred cccCC-CCCCcEEEEeecCc----------chhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 038510 242 IPLAD-DNSGCKVLLTARSQ----------DVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKE 310 (871)
Q Consensus 242 ~~l~~-~~~gs~iivTtr~~----------~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~ 310 (871)
..+.. ...|+.+||+|.+. .++. .+..+..++++++++++.++++++.+....- .--+++.+-|+++
T Consensus 115 ~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l~~~v~~~L~~~ 192 (229)
T PRK06893 115 DLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-ELSDEVANFLLKR 192 (229)
T ss_pred HHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHh
Confidence 22221 12355665554443 2222 3445678999999999999999998863321 2225677889999
Q ss_pred cCCchhHHHH
Q 038510 311 CAGLPIAIVP 320 (871)
Q Consensus 311 c~GlPLai~~ 320 (871)
+.|..-++..
T Consensus 193 ~~~d~r~l~~ 202 (229)
T PRK06893 193 LDRDMHTLFD 202 (229)
T ss_pred ccCCHHHHHH
Confidence 9877655443
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.62 E-value=5.3e-07 Score=87.95 Aligned_cols=168 Identities=16% Similarity=0.158 Sum_probs=95.1
Q ss_pred cCCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----chhhHHHHHHH
Q 038510 147 TQDFMHFESRKSTFKEILDALS-----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS-----HETVRAGRLLE 216 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-----~~~~~~~~l~~ 216 (871)
|.....|+|.++.++.+.-++. .+....+-+||++|+||||||+.+++..... |... ........+..
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~~~sg~~i~k~~dl~~il~ 97 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FKITSGPAIEKAGDLAAILT 97 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EEEEECCC--SCHHHHHHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eEeccchhhhhHHHHHHHHH
Confidence 3445679999998887654443 3457789999999999999999999988764 5411 11233444455
Q ss_pred HHHcCCcEEEEEecCCCcc--Chhhhcc--------ccCCCCCCc-----------EEEEeecCcchhccc-cCCcceee
Q 038510 217 RLKKEKKILIILDDIWGGL--DLEAIGI--------PLADDNSGC-----------KVLLTARSQDVLSCK-MDCQQNFF 274 (871)
Q Consensus 217 ~l~~~kr~LlvlDdv~~~~--~~~~l~~--------~l~~~~~gs-----------~iivTtr~~~va~~~-~~~~~~~~ 274 (871)
.+. ++-+|++|++.... +-+.+.. .+...++++ -|=.|||...+.... ..-..+.+
T Consensus 98 ~l~--~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~ 175 (233)
T PF05496_consen 98 NLK--EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLR 175 (233)
T ss_dssp T----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE
T ss_pred hcC--CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecc
Confidence 554 45688899997542 1111111 111222222 244688887664211 22234568
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 275 VDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 275 l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
++..+.+|-.++..+.+..-.. +--++.+.+|+++|.|-|--+.
T Consensus 176 l~~Y~~~el~~Iv~r~a~~l~i-~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 176 LEFYSEEELAKIVKRSARILNI-EIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp ----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHhcCCChHHHH
Confidence 9999999999999887753221 2225678999999999996444
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.60 E-value=2.8e-09 Score=110.38 Aligned_cols=125 Identities=17% Similarity=0.167 Sum_probs=88.8
Q ss_pred hhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccc-
Q 038510 716 MQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRG- 794 (871)
Q Consensus 716 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~- 794 (871)
...++|+.|.+.+|...++........+.+.|+.|.+..|..+.. . ........+|.|+.|.+++|...++.-..
T Consensus 317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d---~-tL~sls~~C~~lr~lslshce~itD~gi~~ 392 (483)
T KOG4341|consen 317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD---G-TLASLSRNCPRLRVLSLSHCELITDEGIRH 392 (483)
T ss_pred cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh---h-hHhhhccCCchhccCChhhhhhhhhhhhhh
Confidence 345788999998888777665444446788899988888854321 1 12224567899999999998766654111
Q ss_pred -cCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHhHh
Q 038510 795 -SLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEVIF 845 (871)
Q Consensus 795 -~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~ 845 (871)
.....++..|..|.+.+||.+.+- ......++++|+.+++.+|..+..-.
T Consensus 393 l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 393 LSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred hhhccccccccceeeecCCCCchHH-HHHHHhhCcccceeeeechhhhhhhh
Confidence 112346788999999999988876 34566889999999999998875433
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.8e-08 Score=102.04 Aligned_cols=236 Identities=19% Similarity=0.232 Sum_probs=123.2
Q ss_pred cccCCcEEEecccCCCCCc---ccCCCCCccEEEeeCCCcc---ccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCC
Q 038510 541 LLQNLQTLCLNYCNLGDIA---IIGDLKKLEILSLRGSDVE---KLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSR 614 (871)
Q Consensus 541 ~l~~Lr~L~L~~~~i~~~~---~i~~l~~L~~L~l~~~~i~---~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 614 (871)
++..||...|+++.+..+. ....|++++.|||++|-+. .+-.-...|++|+.|+++.|....-.....-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4555566666666555432 3556666666777666333 222335567777777777653221111111234566
Q ss_pred CcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCc
Q 038510 615 LEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGF 694 (871)
Q Consensus 615 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 694 (871)
|+.|.++.|.++|..+ ..-+...++|..|.+..+..
T Consensus 199 lK~L~l~~CGls~k~V-----------~~~~~~fPsl~~L~L~~N~~--------------------------------- 234 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDV-----------QWILLTFPSLEVLYLEANEI--------------------------------- 234 (505)
T ss_pred hheEEeccCCCCHHHH-----------HHHHHhCCcHHHhhhhcccc---------------------------------
Confidence 7777777776654321 11122233333333332210
Q ss_pred cceeEEEeccCCcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeec-CcccccCCc
Q 038510 695 SRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDT-VDCATALTA 773 (871)
Q Consensus 695 ~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~~~~ 773 (871)
......-...++.|+.|+|+++...... .....+.||.|..|+++.| .+..+... .........
T Consensus 235 -------------~~~~~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 235 -------------ILIKATSTKILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHT 299 (505)
T ss_pred -------------cceecchhhhhhHHhhccccCCcccccc-cccccccccchhhhhcccc-CcchhcCCCccchhhhcc
Confidence 0000001123467899999987665432 2233488999999999986 44443211 112223567
Q ss_pred CCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCc---cCChhhhccCCcccEEEeccC
Q 038510 774 FPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKN---VFPLLIGRGLQQLQSIEVTKC 838 (871)
Q Consensus 774 fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~---l~~~~~~~~l~~L~~L~i~~C 838 (871)
||+|+.|.+.. ++..+|.+.. ....+++|+.|.+.. ..+.. ..-..++..+++|..|+=.+|
T Consensus 300 f~kL~~L~i~~-N~I~~w~sl~-~l~~l~nlk~l~~~~-n~ln~e~~~a~~~VIAr~~~l~~LN~~di 364 (505)
T KOG3207|consen 300 FPKLEYLNISE-NNIRDWRSLN-HLRTLENLKHLRITL-NYLNKETDTAKLLVIARISQLVKLNDVDI 364 (505)
T ss_pred cccceeeeccc-Cccccccccc-hhhccchhhhhhccc-ccccccccceeEEeeeehhhhhhhccccc
Confidence 99999999998 5555554211 123567888887543 22321 111223455566666554444
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.6e-07 Score=105.08 Aligned_cols=102 Identities=32% Similarity=0.486 Sum_probs=44.4
Q ss_pred CcceEEEecCCCCCCCCCcccccc-CCcEEEecccCCCCC-cccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCC
Q 038510 520 TGLKVLDFTEMHLLPLPSSLGLLQ-NLQTLCLNYCNLGDI-AIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSK 597 (871)
Q Consensus 520 ~~Lr~L~l~~~~i~~lp~~i~~l~-~Lr~L~L~~~~i~~~-~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 597 (871)
..+..|++.++.++.+|..++.+. +|++|+++++.+..+ ..++.+++|+.|++++|++..+|...+.+++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 344444444444444444444442 444444444444442 344444444444444444444444433444444444444
Q ss_pred CCCCCccChhhhhCCCCCcEEecccC
Q 038510 598 CFELKVIPPNVISSLSRLEELYIGES 623 (871)
Q Consensus 598 ~~~l~~~p~~~i~~L~~L~~L~l~~~ 623 (871)
| .+..+|.. ++.+..|++|.+.+|
T Consensus 196 N-~i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 196 N-KISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred C-ccccCchh-hhhhhhhhhhhhcCC
Confidence 3 34444432 233333444444443
No 48
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=5.7e-07 Score=82.60 Aligned_cols=111 Identities=25% Similarity=0.258 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhccc-----ccccchhh-----HHHHHHHHHHcCCcEEEEEecCCCccChhhhc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNL-----FEKSHETV-----RAGRLLERLKKEKKILIILDDIWGGLDLEAIG 241 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~~~~-----~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~ 241 (871)
.+++.|.|+.|+||||++++++.+....++ |+...... ....+.+... +++.+++||++....+|....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~iDEiq~~~~~~~~l 80 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIK-PGKKYIFIDEIQYLPDWEDAL 80 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhc-cCCcEEEEehhhhhccHHHHH
Confidence 468999999999999999999987651111 22111111 1122223322 367899999999999998877
Q ss_pred cccCCCCCCcEEEEeecCcchh-----ccccCCcceeeccCCCHHHH
Q 038510 242 IPLADDNSGCKVLLTARSQDVL-----SCKMDCQQNFFVDVLNEKEA 283 (871)
Q Consensus 242 ~~l~~~~~gs~iivTtr~~~va-----~~~~~~~~~~~l~~L~~~~~ 283 (871)
..+.+..+..+|++|+.+.... ....+....++|.||+..|.
T Consensus 81 k~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 81 KFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7777766678999999886554 12233445789999998764
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.41 E-value=2.6e-06 Score=87.20 Aligned_cols=165 Identities=14% Similarity=0.157 Sum_probs=99.2
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-ccc--c-cchhhHHHHHHHHHHcCCcEEEEEec
Q 038510 155 SRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFE--K-SHETVRAGRLLERLKKEKKILIILDD 230 (871)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~--~-~~~~~~~~~l~~~l~~~kr~LlvlDd 230 (871)
+....++++.+++.....+.+.|+|..|+|||+||+.+++...... .+- . .........+.+.+. +.-+||+||
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~lLvIDd 98 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLE--QADLVCLDD 98 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcc--cCCEEEEeC
Confidence 3455777888876656677899999999999999999998765321 121 0 111111123333333 234899999
Q ss_pred CCCcc---Chh-hhccccCC-CCCCcEEEEeecCcchh--------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCC
Q 038510 231 IWGGL---DLE-AIGIPLAD-DNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIEN 297 (871)
Q Consensus 231 v~~~~---~~~-~l~~~l~~-~~~gs~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 297 (871)
++... .|. .+...+.. ...+.++|+||+..... .........++++++++++...++...+.....
T Consensus 99 i~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~- 177 (226)
T TIGR03420 99 VEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL- 177 (226)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 97653 333 23322221 12334788888753211 111222467999999999999998875432111
Q ss_pred chhHHHHHHHHHHcCCchhHHHHHH
Q 038510 298 GELKSVATEIVKECAGLPIAIVPVA 322 (871)
Q Consensus 298 ~~l~~~~~~I~~~c~GlPLai~~~~ 322 (871)
+--+++.+.|++.+.|.|..+.-+-
T Consensus 178 ~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 178 QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 1123556778888888887666553
No 50
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=3.6e-06 Score=94.58 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=111.7
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhccc------c------------------
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENNL------F------------------ 202 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F------------------ 202 (871)
.....++|.+..+..+...+..++. ..+-++|+.|+||||+|+.+++..-.... +
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 3455678999999998887776654 57889999999999999999887632110 0
Q ss_pred c-----c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEE-EeecCcchhccccC
Q 038510 203 E-----K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVL-LTARSQDVLSCKMD 268 (871)
Q Consensus 203 ~-----~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtr~~~va~~~~~ 268 (871)
+ . ......+..+.+... .+++-++|+|+++.. ..++.+...+......+.+| +||+...+......
T Consensus 98 Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~S 177 (507)
T PRK06645 98 DIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS 177 (507)
T ss_pred cEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHh
Confidence 0 0 111223333443332 246779999999875 44666666655444555654 45555555432333
Q ss_pred CcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 269 CQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 269 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
....+++.+++.++..+.+.+.+......- -.+....|++.++|.+--+
T Consensus 178 Rc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 178 RCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred cceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 456899999999999999998876332211 2355677999999987433
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=2.2e-07 Score=103.97 Aligned_cols=174 Identities=26% Similarity=0.351 Sum_probs=117.4
Q ss_pred CCCCCceEEEecCCCCCccCcccccCCC-cceEEEecCCCCCCCCCccccccCCcEEEecccCCCCC-cccCCCCCccEE
Q 038510 493 FECPQLKYFRIGNDPSLRIPDNFFTGMT-GLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDI-AIIGDLKKLEIL 570 (871)
Q Consensus 493 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~-~~i~~l~~L~~L 570 (871)
...+.+..|.+.++....++.. ...+. +|+.|+++++.+..+|..++.+++|+.|++++|.+.++ ...+.+.+|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 3456677777777777766664 23342 78888888888887777778888888888888887774 444477888888
Q ss_pred EeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCC
Q 038510 571 SLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSK 650 (871)
Q Consensus 571 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 650 (871)
++++|++..+|..+..+..|..|.+++|.. ...+.. +.++.++..|.+.++.... ....++.+.+
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~-~~~~~~l~~l~l~~n~~~~-------------~~~~~~~l~~ 256 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSS-LSNLKNLSGLELSNNKLED-------------LPESIGNLSN 256 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcc-eecchh-hhhcccccccccCCceeee-------------ccchhccccc
Confidence 888888888887777777788888877632 233333 5677777777655554321 1334566667
Q ss_pred CCeEEEeeccCCCCCcchhhhccceeEEEEeee
Q 038510 651 LTSLEILIQDEKTIPSDLLFFKILKRYRIFIGY 683 (871)
Q Consensus 651 L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~ 683 (871)
|+.|++..+.+..++. +..+.+++.|.+..+.
T Consensus 257 l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 257 LETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cceecccccccccccc-ccccCccCEEeccCcc
Confidence 7777777777766666 5566677777765443
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.4e-06 Score=96.29 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=114.5
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhccc-------------------c-c---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENNL-------------------F-E--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F-~--- 203 (871)
.....++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+..-.... | +
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4456789999999999999987664 45579999999999999988876532110 1 1
Q ss_pred --cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERLK----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
.. .....+..+.+.+. .++.-++|||++.... .|+.+...+-.-....++|+||++ ..+......-+..
T Consensus 93 IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~ 172 (830)
T PRK07003 93 MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQ 172 (830)
T ss_pred ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEE
Confidence 11 11122333444332 2455689999998763 366665555444456777776666 3443223344578
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch-hHHHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP-IAIVPVAR 323 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~ 323 (871)
+.++.++.++..+.+.+.+..+... --.+..+.|++.++|.. -|+..+-.
T Consensus 173 f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 173 FNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999998877533211 12456788999998865 45554333
No 53
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=5.2e-08 Score=101.75 Aligned_cols=202 Identities=22% Similarity=0.214 Sum_probs=129.4
Q ss_pred cccccceeecccCCcCcCCC---CCCCCCceEEEecCCCCCcc--CcccccCCCcceEEEecCCCCCCCCCc--cccccC
Q 038510 472 KLKVCTAISLIYSNISELPQ---GFECPQLKYFRIGNDPSLRI--PDNFFTGMTGLKVLDFTEMHLLPLPSS--LGLLQN 544 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~Lr~L~l~~~~i~~lp~~--i~~l~~ 544 (871)
...+++.+++.++.....+. ...|++++.|++++|-.... --.+...+++|+.|+++.|.+....++ -..+.|
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 35678888888877765542 33788999999988644321 123456788999999998887633222 236788
Q ss_pred CcEEEecccCCCC--C-cccCCCCCccEEEeeCCC-ccccchhhcCCCCCCEEeCCCCCCCCccCh-hhhhCCCCCcEEe
Q 038510 545 LQTLCLNYCNLGD--I-AIIGDLKKLEILSLRGSD-VEKLVGEMGQLTQLRLLDLSKCFELKVIPP-NVISSLSRLEELY 619 (871)
Q Consensus 545 Lr~L~L~~~~i~~--~-~~i~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~ 619 (871)
|+.|.|+.|.++. + .....+++|+.|++..|. +..--.....++.|+.|+|++|+.+ ..+. ..++.++.|+.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 9999999998864 3 446678889999998884 3222233456788889999887444 3331 1267888888888
Q ss_pred cccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCC--cchhhhccceeEEEE
Q 038510 620 IGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIP--SDLLFFKILKRYRIF 680 (871)
Q Consensus 620 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~--~~l~~l~~L~~L~l~ 680 (871)
+..|.+..... .+..+.......++|+.|.+..+.+...+ ..+..+++|++|.+.
T Consensus 278 ls~tgi~si~~------~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 278 LSSTGIASIAE------PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred ccccCcchhcC------CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence 87776532210 11112233445667888888777664433 233455666666654
No 54
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=6.2e-06 Score=90.22 Aligned_cols=170 Identities=14% Similarity=0.181 Sum_probs=109.9
Q ss_pred CccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc----
Q 038510 149 DFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE---- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~---- 203 (871)
....++|.+..++.+.+.+..+++ ..+.++|+.|+||||+|+.+++...... +.+
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~ 93 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEI 93 (363)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEe
Confidence 345688999999999998887665 4568999999999999999988753210 111
Q ss_pred -cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecC-cchhccccCCccee
Q 038510 204 -KS--HETVRAGRLLERLK----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQNF 273 (871)
Q Consensus 204 -~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~~ 273 (871)
.. ........+.+.+. .+++-++|+|++.... .++.+...+.......++|++|.+ ..+..........+
T Consensus 94 ~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~ 173 (363)
T PRK14961 94 DAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQF 173 (363)
T ss_pred cccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEE
Confidence 00 11223344444432 2345699999997664 355565555444456666666654 33322223335789
Q ss_pred eccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 274 FVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 274 ~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
++++++.++..+.+...+..... .--++.++.|++.++|.|-.+.
T Consensus 174 ~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 174 KLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999999999888876543221 1123567789999999885433
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=3.8e-06 Score=92.36 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=110.4
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------c--c--
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN--------------------L--F-- 202 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~--F-- 202 (871)
.....++|.+..+..|..++..++++ .+.++|+.|+||||+|+.+++..-... + |
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcccee
Confidence 34567889999999999998877764 579999999999999999987653211 0 1
Q ss_pred -ccc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcE-EEEeecCcchhccccCCcce
Q 038510 203 -EKS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLTARSQDVLSCKMDCQQN 272 (871)
Q Consensus 203 -~~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtr~~~va~~~~~~~~~ 272 (871)
+.. .....+..+.+.+. .++.-++|+|++... ..++.+...+-....... |+.||....+.......+..
T Consensus 95 Idaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 95 IDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred echhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhe
Confidence 110 11222333433332 346679999999765 446666555533233444 34555555554333444568
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIA 317 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 317 (871)
|.+.+++.++..+.+.+.+..... .--.+....|++.++|.+--
T Consensus 175 ~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 175 FIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHH
Confidence 999999999998888877653221 11245678899999999843
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=6.3e-06 Score=93.08 Aligned_cols=169 Identities=15% Similarity=0.136 Sum_probs=110.0
Q ss_pred CccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcccc-------------------c-----
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLF-------------------E----- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~----- 203 (871)
....++|.+..++.|..++..+..+ .+.++|+.|+||||+|+.+++.......+ +
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 3456889999999999988876654 55999999999999999998876432111 0
Q ss_pred c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeec-CcchhccccCCcceee
Q 038510 204 K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTAR-SQDVLSCKMDCQQNFF 274 (871)
Q Consensus 204 ~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr-~~~va~~~~~~~~~~~ 274 (871)
. ......+..+.+.+. .+++-++|+|+++.. ..++.+...+........+|++|. ...+..........++
T Consensus 92 ~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~ 171 (504)
T PRK14963 92 AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFR 171 (504)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEE
Confidence 1 111222334444332 245679999999755 346666555544344455555444 3444322334456899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 275 VDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 275 l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
+.+++.++..+.+.+.+...... --.+....|++.++|.+--+
T Consensus 172 f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 172 FRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 99999999999998876532211 12456788999999988543
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=3.6e-06 Score=98.10 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=113.1
Q ss_pred CCccccccchHHHHHHHHHhcCCCceE-EEEEcCCCCcHhHHHHHHHHHHhhccc-------------------c-----
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNM-IGVYGMGGIGKTTLVKEVGRQAKENNL-------------------F----- 202 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F----- 202 (871)
.....++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++..-.... |
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 345678899999999999998777665 479999999999999999987643211 1
Q ss_pred -ccc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE-eecCcchhccccCCcce
Q 038510 203 -EKS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL-TARSQDVLSCKMDCQQN 272 (871)
Q Consensus 203 -~~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~va~~~~~~~~~ 272 (871)
+.. .....+..+.+.+. .+++-++|||++... ...+.+...+-.-....++|+ ||....+.......+..
T Consensus 93 idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~ 172 (944)
T PRK14949 93 VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQ 172 (944)
T ss_pred eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheE
Confidence 111 11223344444332 356779999999765 445555555433334555554 44445554222334578
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
|++++|+.++....+.+.+..... .--.+..+.|++.++|.|--+..+
T Consensus 173 f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 173 FNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999988886643221 122456788999999988544433
No 58
>PLN03025 replication factor C subunit; Provisional
Probab=98.37 E-value=3.8e-06 Score=90.45 Aligned_cols=169 Identities=11% Similarity=0.069 Sum_probs=104.2
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cc-c-ccchh---hHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LF-E-KSHET---VRAGRLLERLK 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~-~~~~~---~~~~~l~~~l~ 219 (871)
.....++|.++.++.|..++..++.+.+.++|++|+||||+|+.+++..-... .+ . ..++. ..+......+.
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~ 89 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFA 89 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHH
Confidence 34456789988888888888877777888999999999999999998763211 11 1 11111 11222221111
Q ss_pred -------cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeeccCCCHHHHHHHHHH
Q 038510 220 -------KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFRK 289 (871)
Q Consensus 220 -------~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (871)
.++.-++|+|++.... ..+.+...+......++++++|... .+..........++++++++++..+.+..
T Consensus 90 ~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~ 169 (319)
T PLN03025 90 QKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMK 169 (319)
T ss_pred hccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHH
Confidence 1346799999997652 2233333332223456677666442 22211122346899999999999998888
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCchhH
Q 038510 290 MTGDCIENGELKSVATEIVKECAGLPIA 317 (871)
Q Consensus 290 ~~~~~~~~~~l~~~~~~I~~~c~GlPLa 317 (871)
.+......- -.+..+.|++.++|-.-.
T Consensus 170 i~~~egi~i-~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 170 VVEAEKVPY-VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 775322111 135678899999987633
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=3.4e-06 Score=95.06 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=113.6
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc-------------------------cc
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN-------------------------NL 201 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------------~~ 201 (871)
.....++|.+..++.|.+++..+++. .+.++|..|+||||+|+.+.+..--. .|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 44567899999999999999877654 56889999999999999998765321 00
Q ss_pred cc-----c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcE-EEEeecCcchhcccc
Q 038510 202 FE-----K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLTARSQDVLSCKM 267 (871)
Q Consensus 202 F~-----~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtr~~~va~~~~ 267 (871)
.| . ....+.+..+.+.+. .++.-++|||++... ..++.+...+-.-..+.+ |++||....+.....
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIr 172 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHH
Confidence 11 0 111223344444432 356679999999765 445666555543334455 555665565653333
Q ss_pred CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 268 DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 268 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
.-+..+.++.++.++..+.+.+.+..+... .-.+..+.|++.++|.|..+..+
T Consensus 173 SRCq~f~f~~ls~eei~~~L~~Il~~Egi~-~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 173 SRCLQFNLKQMPPGHIVSHLDAILGEEGIA-HEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred HHHHhcccCCCChHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 445789999999999999888776532211 12345678999999998654433
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.36 E-value=3.3e-08 Score=102.70 Aligned_cols=282 Identities=17% Similarity=0.186 Sum_probs=168.0
Q ss_pred cCCcEEEecccCC-CC--C-cccCCCCCccEEEeeCC-Ccc--ccchhhcCCCCCCEEeCCCCCCCCccChh-hhhCCCC
Q 038510 543 QNLQTLCLNYCNL-GD--I-AIIGDLKKLEILSLRGS-DVE--KLVGEMGQLTQLRLLDLSKCFELKVIPPN-VISSLSR 614 (871)
Q Consensus 543 ~~Lr~L~L~~~~i-~~--~-~~i~~l~~L~~L~l~~~-~i~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-~i~~L~~ 614 (871)
-.|+.|.+++|+- .. + ....+++++++|++.+| +++ .+-+--.++++|++|++..|..+++.... ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578889999973 33 2 34568999999999998 454 22233457899999999998887775543 3456889
Q ss_pred CcEEecccCCCCccccccccchhcccch-hhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCC
Q 038510 615 LEELYIGESPIQWGTVEGLDSERRNASL-HELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDG 693 (871)
Q Consensus 615 L~~L~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 693 (871)
|.+|++++|.--.. ..+ .-.+++.+++.+...+.. ..+.. .+..... .
T Consensus 218 L~~lNlSwc~qi~~-----------~gv~~~~rG~~~l~~~~~kGC~--e~~le--~l~~~~~------~---------- 266 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG-----------NGVQALQRGCKELEKLSLKGCL--ELELE--ALLKAAA------Y---------- 266 (483)
T ss_pred HHHhhhccCchhhc-----------CcchHHhccchhhhhhhhcccc--cccHH--HHHHHhc------c----------
Confidence 99999988752111 011 112333334433332111 11100 0000000 0
Q ss_pred ccceeEEEeccCCcccc-hhh-HHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccC
Q 038510 694 FSRKFKLKITNGANICL-NEG-HIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATAL 771 (871)
Q Consensus 694 ~~~l~~L~l~~~~~~~~-~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 771 (871)
...+.++++..+..... ..| +...+..|+.|+.++|....+.+.+.-..+.++|+.|.+..|..+... ....-.
T Consensus 267 ~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----~ft~l~ 342 (483)
T KOG4341|consen 267 CLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----GFTMLG 342 (483)
T ss_pred ChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh----hhhhhh
Confidence 01112222222211111 122 233467889999999988766554433467899999999999865433 112233
Q ss_pred CcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCC---hhhhccCCcccEEEeccCcchHhHhhcC
Q 038510 772 TAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFP---LLIGRGLQQLQSIEVTKCQNMEVIFAAD 848 (871)
Q Consensus 772 ~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~---~~~~~~l~~L~~L~i~~C~~l~~i~~~~ 848 (871)
...+.|+.+.+.+|....+-.-.. ...++|.|++|+++.|..+++..- .....++..|+.+++++||.+++-.-+.
T Consensus 343 rn~~~Le~l~~e~~~~~~d~tL~s-ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~ 421 (483)
T KOG4341|consen 343 RNCPHLERLDLEECGLITDGTLAS-LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH 421 (483)
T ss_pred cCChhhhhhcccccceehhhhHhh-hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence 567899999999886544321111 134789999999999977666410 0122456789999999999998877532
Q ss_pred CCCcccCCCcccccccccceeeC
Q 038510 849 RGDESSNNNTQVIELTQLRTLEL 871 (871)
Q Consensus 849 ~~~~~~~~~~~~~~~p~L~~l~L 871 (871)
+..||+|+++.|
T Consensus 422 -----------l~~c~~Leri~l 433 (483)
T KOG4341|consen 422 -----------LSICRNLERIEL 433 (483)
T ss_pred -----------HhhCcccceeee
Confidence 345777777654
No 61
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.35 E-value=5.9e-07 Score=94.41 Aligned_cols=263 Identities=19% Similarity=0.158 Sum_probs=168.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc----------------------------ccchhhHHHHHHHHHHcCC
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----------------------------KSHETVRAGRLLERLKKEK 222 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----------------------------~~~~~~~~~~l~~~l~~~k 222 (871)
..+.+.++|.|||||||++-++.. .+.. |. .......+..+...+. ++
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~-~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIG-DR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHh-hh
Confidence 357899999999999999999887 3332 33 0111223445556665 58
Q ss_pred cEEEEEecCCCcc-ChhhhccccCCCCCCcEEEEeecCcchhccccCCcceeeccCCCHH-HHHHHHHHHhCCCC----C
Q 038510 223 KILIILDDIWGGL-DLEAIGIPLADDNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEK-EAWSLFRKMTGDCI----E 296 (871)
Q Consensus 223 r~LlvlDdv~~~~-~~~~l~~~l~~~~~gs~iivTtr~~~va~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~----~ 296 (871)
|.++|+||..+.. .-..+...+..+...-.|+.|+|+... ......+.+++|+.. ++.++|...+.... -
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 9999999986552 222233334445555668888887643 344556777777754 78889877764211 1
Q ss_pred CchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHH----hcCCCCCCccchhhhhheecccccccCChhhHH
Q 038510 297 NGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLE----LRRPSFRNISGTLEVAYKSIELSYNHLNREELK 372 (871)
Q Consensus 297 ~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~----l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk 372 (871)
...-.....+|.++.+|.|++|...++..+.....+-..-++. +... ............+.+.+||.-|..- -+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~ 242 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ER 242 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HH
Confidence 2233567889999999999999999999997765554444433 2222 2222233467889999999999998 69
Q ss_pred HHHHhhcccc-cchhhhHHHHhhcccccccccchHHHHHHHHHHHHHHHHhcccccC--CCccceehhHHHHHHHHHHhc
Q 038510 373 RTFLLIGYAF-ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVDKLKKSCLLVDG--NTSERFSMHDVVRDAAISIAS 449 (871)
Q Consensus 373 ~cfl~~s~fp-~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~--~~~~~~~~Hdlv~d~a~~~~~ 449 (871)
--|.-++.|. .|... ...|.+-|-.. ..........+..+++.+++.-. .....|+.-+-+|.|+..+-.
T Consensus 243 ~~~~rLa~~~g~f~~~--l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 243 ALFGRLAVFVGGFDLG--LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred HHhcchhhhhhhhccc--HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 66655 33454443211 00111222345567777877432 233457777777777776654
Q ss_pred C
Q 038510 450 G 450 (871)
Q Consensus 450 ~ 450 (871)
+
T Consensus 316 r 316 (414)
T COG3903 316 R 316 (414)
T ss_pred h
Confidence 4
No 62
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.34 E-value=4e-06 Score=98.35 Aligned_cols=163 Identities=17% Similarity=0.255 Sum_probs=99.9
Q ss_pred CCccccccchHHHH---HHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccc----hhhH----HHHHHH
Q 038510 148 QDFMHFESRKSTFK---EILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSH----ETVR----AGRLLE 216 (871)
Q Consensus 148 ~~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~----~~~~----~~~l~~ 216 (871)
.....|+|++..+. .+..++..+..+.+.++|++|+||||+|+.+++.... +|.... .... .....+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~~lna~~~~i~dir~~i~~a~~ 102 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFSSLNAVLAGVKDLRAEVDRAKE 102 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cceeehhhhhhhHHHHHHHHHHHH
Confidence 34456889888774 4666677777888899999999999999999987653 343111 1111 112222
Q ss_pred HHH-cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE--eecCcc--hhccccCCcceeeccCCCHHHHHHHHHH
Q 038510 217 RLK-KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL--TARSQD--VLSCKMDCQQNFFVDVLNEKEAWSLFRK 289 (871)
Q Consensus 217 ~l~-~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--va~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (871)
.+. .+++.++||||++.. ..++.+...+ ..|+.++| ||.+.. +..........+.+++|+.++...++.+
T Consensus 103 ~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 103 RLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred HhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHH
Confidence 222 135679999999754 3444443322 23555555 344432 2111122346799999999999999987
Q ss_pred HhCC------CCCCchhHHHHHHHHHHcCCch
Q 038510 290 MTGD------CIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 290 ~~~~------~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.+.. .....--+++.+.|++.+.|.-
T Consensus 180 ~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 180 ALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 6641 1111222456678888888764
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.33 E-value=8.9e-06 Score=88.87 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=104.0
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cc---cccc-----------------
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LF---EKSH----------------- 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F---~~~~----------------- 206 (871)
...++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+...... .| +...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAH 93 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhh
Confidence 456889999999999998877777889999999999999999988653221 11 1000
Q ss_pred -----------hhhHHHHHHHHHHc-----CCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecCcc-hhcccc
Q 038510 207 -----------ETVRAGRLLERLKK-----EKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARSQD-VLSCKM 267 (871)
Q Consensus 207 -----------~~~~~~~l~~~l~~-----~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~ 267 (871)
.......+.+.... ..+-++|+||+.... ..+.+...+.......++|+||.... +.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~ 173 (337)
T PRK12402 94 FLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIR 173 (337)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhc
Confidence 00111112112111 234589999996542 23334333323334567777775432 211122
Q ss_pred CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 268 DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 268 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
.....+++.+++.++....+.+.+...... --.+..+.+++.++|.+-.+.
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 334678999999999998888876432211 224577889999988765443
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=98.33 E-value=1.7e-05 Score=90.33 Aligned_cols=176 Identities=13% Similarity=0.115 Sum_probs=107.0
Q ss_pred CCccccccchHHHHHHHHHhcC----CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccch---hhHHHHHHHHHH-
Q 038510 148 QDFMHFESRKSTFKEILDALSN----RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHE---TVRAGRLLERLK- 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~---~~~~~~l~~~l~- 219 (871)
.....++|+++.++++.+|+.. ...+.+.|+|++|+||||+|+.++++....-..-..++ ...+..+.....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~ 90 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAAT 90 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhc
Confidence 3455688999999999998862 22678999999999999999999997642100001111 111222221111
Q ss_pred -----cCCcEEEEEecCCCccC------hhhhccccCCCCCCcEEEEeecCcc-hhc-cccCCcceeeccCCCHHHHHHH
Q 038510 220 -----KEKKILIILDDIWGGLD------LEAIGIPLADDNSGCKVLLTARSQD-VLS-CKMDCQQNFFVDVLNEKEAWSL 286 (871)
Q Consensus 220 -----~~kr~LlvlDdv~~~~~------~~~l~~~l~~~~~gs~iivTtr~~~-va~-~~~~~~~~~~l~~L~~~~~~~L 286 (871)
..++-+||+|+++.... +..+...+. ..+..||+|+.+.. ... ........+.+.+++.++....
T Consensus 91 ~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~ 168 (482)
T PRK04195 91 SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPV 168 (482)
T ss_pred cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHH
Confidence 12578999999976522 334433332 22334666664432 211 1223456899999999999988
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 038510 287 FRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALI 326 (871)
Q Consensus 287 f~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~ 326 (871)
+.+.+......- -.++...|++.++|-.-.+......+.
T Consensus 169 L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 169 LKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 887764322111 145788899999998765554433343
No 65
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.32 E-value=1.2e-05 Score=88.77 Aligned_cols=168 Identities=15% Similarity=0.182 Sum_probs=98.0
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-c----cc--------ccc-------
Q 038510 151 MHFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-L----FE--------KSH------- 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~----F~--------~~~------- 206 (871)
..++||++++++|..++. ....+.+.|+|++|+|||++++.++++..... . |. ...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 358899999999999886 23456899999999999999999998754210 0 11 000
Q ss_pred ------------------hhhHHHHHHHHHH-cCCcEEEEEecCCCcc-Chhh----hcccc-CCCCC--CcEEEEeecC
Q 038510 207 ------------------ETVRAGRLLERLK-KEKKILIILDDIWGGL-DLEA----IGIPL-ADDNS--GCKVLLTARS 259 (871)
Q Consensus 207 ------------------~~~~~~~l~~~l~-~~kr~LlvlDdv~~~~-~~~~----l~~~l-~~~~~--gs~iivTtr~ 259 (871)
.......+.+.+. .+++++||||+++... ..+. +.... ..... .-.+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 0111223334443 2467899999998762 1122 11110 11112 2234555544
Q ss_pred cchhc----c--ccCCcceeeccCCCHHHHHHHHHHHhC---C-CCCCchhHHHHHHHHHHcCCchhHH
Q 038510 260 QDVLS----C--KMDCQQNFFVDVLNEKEAWSLFRKMTG---D-CIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 260 ~~va~----~--~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~-~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
..... . ..-....+.+++.+.++..+++..++. . ....++..+....++....|.|-.+
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred cchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 32210 0 011135689999999999999998763 1 1122333334555677777888443
No 66
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=2e-06 Score=87.72 Aligned_cols=161 Identities=15% Similarity=0.235 Sum_probs=101.0
Q ss_pred ccccchHHHH---HHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccc-cc----ccchhhHHHHHHHHH-----
Q 038510 152 HFESRKSTFK---EILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNL-FE----KSHETVRAGRLLERL----- 218 (871)
Q Consensus 152 ~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~----~~~~~~~~~~l~~~l----- 218 (871)
+++|.+..+. -|.+.+.++.++.+.+||++|+||||||+.+.+..+.... |- .......+..+.+.-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~~ 218 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEKS 218 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHHh
Confidence 3455544332 3455556788999999999999999999999987765433 33 122222333332221
Q ss_pred HcCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE--eecCcchh--ccccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 219 KKEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL--TARSQDVL--SCKMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 219 ~~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv--Ttr~~~va--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
..++|..|++|.|..- .+-+ ..+|.-.+|+-++| ||.+...- ......+.++.+++|+.++...++.+...
T Consensus 219 l~krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 2358899999999654 2333 24556677876665 78776442 22345567899999999999999887432
Q ss_pred ---CC------CCCch---hHHHHHHHHHHcCCch
Q 038510 293 ---DC------IENGE---LKSVATEIVKECAGLP 315 (871)
Q Consensus 293 ---~~------~~~~~---l~~~~~~I~~~c~GlP 315 (871)
+. .+.+. ...+.+-++..|+|--
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 11 11111 1235566667777764
No 67
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=1.7e-05 Score=80.22 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=96.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccchhhHHHHHHHHHHcCCcEEEEEecCCCcc-ChhhhccccC-CCC
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHETVRAGRLLERLKKEKKILIILDDIWGGL-DLEAIGIPLA-DDN 248 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~-~~~~l~~~l~-~~~ 248 (871)
..+.+.|+|..|+|||+|++.+++..... |-.. ..........+.. -++++||+.... +-+.+...+. -..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~--~~~~~~~~~~~~~---~~l~iDDi~~~~~~~~~lf~l~n~~~~ 115 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHP--NEIGSDAANAAAE---GPVLIEDIDAGGFDETGLFHLINSVRQ 115 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecH--HHcchHHHHhhhc---CeEEEECCCCCCCCHHHHHHHHHHHHh
Confidence 35679999999999999999998765432 2211 1111222233332 378889996432 1122222221 123
Q ss_pred CCcEEEEeecCcchh--------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 249 SGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 249 ~gs~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
.|..||+|++...-. ........+++++++++++-.+++.+.+.... -.--+++..-|++.+.|..-++..
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ-LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 356788888742110 12345667999999999999999998885421 112256788899988888766654
Q ss_pred HHHHHh------cC--ChhHHHHHHHH
Q 038510 321 VARALI------NK--RLFEWKDSLLE 339 (871)
Q Consensus 321 ~~~~l~------~~--~~~~w~~~~~~ 339 (871)
+-..|. ++ +....+.+++.
T Consensus 195 ~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 195 IVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 322221 22 55556665544
No 68
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8.2e-06 Score=92.28 Aligned_cols=172 Identities=13% Similarity=0.162 Sum_probs=111.4
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~--- 203 (871)
.....++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.+++..-... |-|
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 4456789999999999999987664 5678999999999999999987653211 111
Q ss_pred --cc--chhhHHHHHHHHH----HcCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERL----KKEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l----~~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
.. .....+..+.... ..+++-++|+|+|... ...+.+...+.....+.++|++|.+ ..+.......+..
T Consensus 92 IDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~ 171 (702)
T PRK14960 92 IDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQ 171 (702)
T ss_pred ecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhhe
Confidence 11 1122233333333 1256679999999765 3455555444443455677766655 3332222344578
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
+++++++.++..+.+.+.+...... --.+....|++.++|.+-.+..
T Consensus 172 feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 172 FTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred eeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999998888776532221 1245677899999998754443
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.29 E-value=1.6e-05 Score=87.31 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=99.4
Q ss_pred CccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccc---------
Q 038510 149 DFMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSH--------- 206 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~--------- 206 (871)
....+.|+++.++++.+.+. . ...+-+.++|++|+|||++|+.+++..... |-...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~~~v~~~~l~~~~~ 197 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVVGSELVRKYI 197 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--EEecchHHHHHHhh
Confidence 34567899999999888764 1 124568999999999999999999876542 33111
Q ss_pred --hhhHHHHHHHHHHcCCcEEEEEecCCCcc----------------ChhhhccccC--CCCCCcEEEEeecCcchh-cc
Q 038510 207 --ETVRAGRLLERLKKEKKILIILDDIWGGL----------------DLEAIGIPLA--DDNSGCKVLLTARSQDVL-SC 265 (871)
Q Consensus 207 --~~~~~~~l~~~l~~~kr~LlvlDdv~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~~~va-~~ 265 (871)
.......+.+......+.+|++||++... .+..+...+. ....+.+||.||...... ..
T Consensus 198 g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~a 277 (364)
T TIGR01242 198 GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPA 277 (364)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChh
Confidence 11112233333344467899999987531 0111211111 123456788888764322 11
Q ss_pred c---cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 266 K---MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 266 ~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
. ..-+..+.++..+.++..++|..++......++. -...+++.+.|..
T Consensus 278 l~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 278 LLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred hcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 1 1234578999999999999999887643322211 1356777887764
No 70
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.1e-05 Score=86.79 Aligned_cols=164 Identities=15% Similarity=0.193 Sum_probs=109.8
Q ss_pred cccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHh----hccccc-----c-cc---hhhHHHHHHH
Q 038510 151 MHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAK----ENNLFE-----K-SH---ETVRAGRLLE 216 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~-----~-~~---~~~~~~~l~~ 216 (871)
..++|.+..++.+..++..+.. ....++|+.|+||||+|+.++...- ...|+| . .. ..+.+..+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~ 83 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIE 83 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHH
Confidence 3567888889999999987665 4668999999999999999998642 123433 1 11 1123333444
Q ss_pred HHH----cCCcEEEEEecCC--CccChhhhccccCCCCCCcEEEEeecCcchh-ccccCCcceeeccCCCHHHHHHHHHH
Q 038510 217 RLK----KEKKILIILDDIW--GGLDLEAIGIPLADDNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFRK 289 (871)
Q Consensus 217 ~l~----~~kr~LlvlDdv~--~~~~~~~l~~~l~~~~~gs~iivTtr~~~va-~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (871)
.+. .+++-++|+|++. +...++.+...+.....++.+|++|.+.+.. ......+..+.+.++++++....+.+
T Consensus 84 ~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 84 EVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred HHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHH
Confidence 332 2355577777764 4566888877777667788888888765432 22233457899999999999887766
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 290 MTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 290 ~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
.... . -.+.++.++..++|.|..+.
T Consensus 164 ~~~~-~----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 164 KYND-I----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HhcC-C----CHHHHHHHHHHcCCCHHHHH
Confidence 5431 1 12346788999999986554
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.5e-05 Score=89.19 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=109.2
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~--- 203 (871)
.....++|.+.....+...+..+.. ..+.++|++|+||||+|+.+++...... +.+
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 3456688999888888888887766 4578999999999999999987653211 111
Q ss_pred --cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
.. .....+..+.+... .+++-++|+|++... ...+.+...+........+|++|.+ ..+..........
T Consensus 91 l~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~v 170 (472)
T PRK14962 91 LDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQV 170 (472)
T ss_pred EeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEE
Confidence 11 11222333433332 235679999999654 3344454444332333444444433 3443323344568
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVPVARAL 325 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~~~l 325 (871)
+++.+++.++....+.+.+..... .--.++...|++.++|- +.|+..+-.+.
T Consensus 171 v~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 171 IEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999999999998888887643211 11245677888887654 67766665543
No 72
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=1.9e-06 Score=100.97 Aligned_cols=103 Identities=21% Similarity=0.331 Sum_probs=81.7
Q ss_pred cceEEEecCCCCC-CCCCccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCCCcc-ccchhhcCCCCCCEEeCC
Q 038510 521 GLKVLDFTEMHLL-PLPSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGSDVE-KLVGEMGQLTQLRLLDLS 596 (871)
Q Consensus 521 ~Lr~L~l~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~ 596 (871)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+.. |..++.+.+|++|++++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4778888888887 778888888999999999888864 567888889999999888887 678888888999999998
Q ss_pred CCCCCCccChhhhhC-CCCCcEEecccCC
Q 038510 597 KCFELKVIPPNVISS-LSRLEELYIGESP 624 (871)
Q Consensus 597 ~~~~l~~~p~~~i~~-L~~L~~L~l~~~~ 624 (871)
+|...+.+|.. ++. +.++..+++.+|.
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCc
Confidence 88766678876 444 3466677776664
No 73
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.5e-05 Score=91.34 Aligned_cols=172 Identities=13% Similarity=0.167 Sum_probs=109.8
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc-------------------------cc
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN-------------------------NL 201 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------------~~ 201 (871)
.....++|.+..++.|.+++..+++ ..+.++|+.|+||||+|+.+.+..--. .|
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 3456788999999999999987766 456899999999999999996654211 11
Q ss_pred cc-----c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE-eecCcchhcccc
Q 038510 202 FE-----K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL-TARSQDVLSCKM 267 (871)
Q Consensus 202 F~-----~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~va~~~~ 267 (871)
.| . ....+.+..+.+.+. .++.-++|||+|... ..++.+...+..-....++|+ ||....+.....
T Consensus 93 ~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIl 172 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVL 172 (618)
T ss_pred CceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHH
Confidence 11 0 111223333444332 245568999999865 345556555544344555554 444444442234
Q ss_pred CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 268 DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 268 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
..+..+++++++.++..+.+.+.+...... --.+..+.|++.++|.+--+..
T Consensus 173 SRc~~~~f~~Ls~eei~~~L~~i~~~egi~-ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 173 SRCLQFNLRPMAPETVLEHLTQVLAAENVP-AEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HhceeeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 446789999999999988888776432211 1235678899999998744433
No 74
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=1.1e-05 Score=89.79 Aligned_cols=170 Identities=14% Similarity=0.114 Sum_probs=110.4
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhh--------------------ccccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKE--------------------NNLFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~F~--- 203 (871)
.....++|.+..++.+.+++..++++ .+-++|+.|+||||+|+.++...-. ..|.|
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 44567889999999998888877765 7899999999999999999864311 11222
Q ss_pred --c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEee-cCcchhccccCCcce
Q 038510 204 --K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTA-RSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~va~~~~~~~~~ 272 (871)
. ....+.+..+.+... .+++-++|+|++... ...+.+...+-.-....++|++| ....+.......+..
T Consensus 90 idaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~ 169 (491)
T PRK14964 90 IDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQR 169 (491)
T ss_pred EecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhhee
Confidence 1 112233444444432 245668999999655 33555555554444556655544 444554323344578
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
+++++++.++..+.+.+.+...... --++..+.|++.++|.+-.+
T Consensus 170 ~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 170 FDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 9999999999999988877533221 12456778999999987543
No 75
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2.1e-05 Score=85.21 Aligned_cols=170 Identities=13% Similarity=0.089 Sum_probs=109.9
Q ss_pred cCCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc------------------------c
Q 038510 147 TQDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN------------------------L 201 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~ 201 (871)
+.....++|.++.++.+.+.+..++++ .+.++|+.|+||+|+|..+.+..--+. .
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 344556889999999999998877765 588999999999999988877542110 0
Q ss_pred c------c-----c---cc--------hhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEE
Q 038510 202 F------E-----K---SH--------ETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKV 253 (871)
Q Consensus 202 F------~-----~---~~--------~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~i 253 (871)
+ | . .. ..+.+..+.+.+. .+++.++|+||+... ...+.+...+..-..+..+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 0 0 0 10 0122333344332 256779999999654 3455555444433345566
Q ss_pred EEeecCc-chhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 254 LLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 254 ivTtr~~-~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
|++|.+. .+..........+.+.+++.++..+.+........ .+....+++.++|.|+.+..+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 6666664 33322344567899999999999999987643211 122267899999999865543
No 76
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.3e-05 Score=91.96 Aligned_cols=173 Identities=13% Similarity=0.175 Sum_probs=111.6
Q ss_pred CCccccccchHHHHHHHHHhcCCCceE-EEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNM-IGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~--- 203 (871)
.....++|.+..++.|.+.+..+++.- +.++|..|+||||+|+.+++..-... |.|
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 345678899999999999988776644 57999999999999999987653321 111
Q ss_pred --cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcE-EEEeecCcchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLTARSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtr~~~va~~~~~~~~~ 272 (871)
.. .....+..+.+.+. .+++-++|||++... ...+.+...+-.-....+ |++||....+.......+..
T Consensus 93 idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~ 172 (647)
T PRK07994 93 IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 172 (647)
T ss_pred ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheE
Confidence 11 11223344444432 356779999999765 345555444433334455 44555555554222334678
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
+.+++++.++..+.+.+....... ..-.+..+.|++.++|.+-.+..+
T Consensus 173 ~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 173 FHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999888876632221 112355678999999988544433
No 77
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=3.6e-05 Score=82.98 Aligned_cols=172 Identities=13% Similarity=0.103 Sum_probs=109.7
Q ss_pred cCCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc-----c--ccc---------------
Q 038510 147 TQDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN-----N--LFE--------------- 203 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-----~--~F~--------------- 203 (871)
|.....++|.++....+...+..+..+ .+.|+|+.|+||||+|..+.+..-.. . .+.
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~ 98 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQG 98 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcC
Confidence 445567899999999999998877654 58899999999999999988765320 0 000
Q ss_pred ---------c---cc-----h---hhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcE-EEEe
Q 038510 204 ---------K---SH-----E---TVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLT 256 (871)
Q Consensus 204 ---------~---~~-----~---~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivT 256 (871)
. .. . .+.+..+.+.+. .+++-++|+|++... ...+.+...+........ |++|
T Consensus 99 ~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 99 AHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0 00 0 122334444443 356779999999755 334444444433223344 4555
Q ss_pred ecCcchhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 257 ARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 257 tr~~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
++...+..........+.+.+++.++..+.+.+...... -..+....|++.++|.|..+..+
T Consensus 179 ~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 554444322233457899999999999999987432211 11345778999999999866543
No 78
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.3e-05 Score=88.78 Aligned_cols=169 Identities=12% Similarity=0.104 Sum_probs=109.5
Q ss_pred CccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc---------------------------
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN--------------------------- 200 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------------- 200 (871)
....++|.+..++.|.+++..++++ .+.++|+.|+||||+|..+++...-..
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3456889999999999998877665 488999999999999999988664311
Q ss_pred -ccc-----cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEee-cCcchhcc
Q 038510 201 -LFE-----KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTA-RSQDVLSC 265 (871)
Q Consensus 201 -~F~-----~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~va~~ 265 (871)
|++ .. .....+..+.+.+. .+++-++|+|++... ..++.+...+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 111 10 11233444445552 235668999999755 35666666655444566655554 43444321
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
.......++++++++++..+.+...+.... ..--.+.++.|++.++|.+--+
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 223346789999999999888877664221 1112456888999999977433
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.8e-05 Score=89.62 Aligned_cols=175 Identities=11% Similarity=0.160 Sum_probs=109.9
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~--- 203 (871)
.....++|.+..++.+..++..+++ ..+.++|+.|+||||+|+.+++..-... +.+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3456688999999999999887655 4577999999999999999987553210 001
Q ss_pred --c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEE-EeecCcchhccccCCcce
Q 038510 204 --K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVL-LTARSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtr~~~va~~~~~~~~~ 272 (871)
. .........+.+.+. .+++-++|+|++... ..++.+...+-.......+| +||....+.......+..
T Consensus 93 idaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~ 172 (546)
T PRK14957 93 IDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQ 172 (546)
T ss_pred eecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheee
Confidence 0 011122333433332 246679999999754 34555655554444455555 555444443223344678
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch-hHHHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP-IAIVPVAR 323 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~ 323 (871)
+++++++.++..+.+.+.+..... .--++....|++.++|.+ -|+..+-.
T Consensus 173 ~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 173 LHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999988777775543221 122455678999999966 44444433
No 80
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=1.6e-05 Score=90.97 Aligned_cols=172 Identities=13% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc--------------------cccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~--- 203 (871)
.....++|.+..++.|.+++..+++. .+.++|+.|+||||+|+.+.+..-.. .++|
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 44567899999999999999877654 67999999999999999998753211 1222
Q ss_pred --cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERLK----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
.. .....+..+.+... .+++-++|||++.... ..+.+...+-.-....++|++|.+ ..+.......+..
T Consensus 93 idaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~ 172 (709)
T PRK08691 93 IDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQ 172 (709)
T ss_pred EeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhh
Confidence 01 11222333333221 2466799999997653 234444444333344566665544 3333222234467
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
+.+.+++.++....+.+.+...... --.+..+.|++.++|.+.-+..
T Consensus 173 f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 173 FVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred hhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHHH
Confidence 8889999999998888776532211 1245678899999998844433
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=2.2e-05 Score=77.66 Aligned_cols=149 Identities=19% Similarity=0.180 Sum_probs=95.3
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc--------------------cccc-----c---cchhhHHH
Q 038510 162 EILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFE-----K---SHETVRAG 212 (871)
Q Consensus 162 ~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~-----~---~~~~~~~~ 212 (871)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+..-.. .+.| . ....+.+.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 45555555665 578899999999999999998876432 1111 0 11122333
Q ss_pred HHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeeccCCCHHHHHH
Q 038510 213 RLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWS 285 (871)
Q Consensus 213 ~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l~~L~~~~~~~ 285 (871)
.+.+.+. .+.+-++|+||+... ..++.+...+......+.+|++|++. .+..........+++.+++.++..+
T Consensus 83 ~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~ 162 (188)
T TIGR00678 83 ELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQ 162 (188)
T ss_pred HHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHH
Confidence 3344442 245678999998654 34555655554444456666666653 3322122334689999999999988
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCchhH
Q 038510 286 LFRKMTGDCIENGELKSVATEIVKECAGLPIA 317 (871)
Q Consensus 286 Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 317 (871)
.+.+. + . -++.++.|++.++|.|..
T Consensus 163 ~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 163 WLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 88776 2 1 145688999999998853
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.1e-05 Score=89.09 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=108.0
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~--- 203 (871)
.....++|++..++.+.+++..+.++ .+.++|+.|+||||+|+.+++...... |.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEE
Confidence 34567889999999999998765544 688999999999999999988753211 111
Q ss_pred --cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE-eecCcchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL-TARSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~va~~~~~~~~~ 272 (871)
.. ...+.+..+.+.+. .+++-++|+|++... ..++.+...+-.......+|+ |+....+.......+..
T Consensus 93 Idaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ 172 (605)
T PRK05896 93 LDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQR 172 (605)
T ss_pred eccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhh
Confidence 11 11122333333332 124457999999754 345555554433333455444 44444443222334568
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPVAR 323 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 323 (871)
+++.+++.++....+...+...... --.+.+..|++.++|.+- |+..+-.
T Consensus 173 ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 173 YNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred cccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 9999999999998888766432211 113457789999999664 4444333
No 83
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.17 E-value=2.8e-05 Score=79.57 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cccccch-hhHHHHHHHHHHcCCcEEEEEecCC
Q 038510 157 KSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFEKSHE-TVRAGRLLERLKKEKKILIILDDIW 232 (871)
Q Consensus 157 ~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~~-~~~~~~l~~~l~~~kr~LlvlDdv~ 232 (871)
...+..+..+......+.+.|+|+.|+|||+|++.+++....+. .|-.... ......+.+.+.+ --++++||+.
T Consensus 30 ~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~--~dlliiDdi~ 107 (235)
T PRK08084 30 DSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQ--LSLVCIDNIE 107 (235)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhh--CCEEEEeChh
Confidence 34455555555455567899999999999999999998765321 1221111 1112233334432 2488999996
Q ss_pred Cc---cChhhhc-cccCC-CCCC-cEEEEeecCcchh--------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCc
Q 038510 233 GG---LDLEAIG-IPLAD-DNSG-CKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENG 298 (871)
Q Consensus 233 ~~---~~~~~l~-~~l~~-~~~g-s~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~ 298 (871)
.. ..|+... ..+.. ...| .++|+||+...-. ..+.....+++++++++++-.+++.+++.... -.
T Consensus 108 ~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~ 186 (235)
T PRK08084 108 CIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG-FE 186 (235)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC-CC
Confidence 54 3454321 11111 1123 3689998864221 12345557899999999999999988664321 12
Q ss_pred hhHHHHHHHHHHcCCchhHHH
Q 038510 299 ELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 299 ~l~~~~~~I~~~c~GlPLai~ 319 (871)
--+++..-|++.+.|..-++.
T Consensus 187 l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 187 LPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred CCHHHHHHHHHhhcCCHHHHH
Confidence 235678888888887654443
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.6e-05 Score=90.00 Aligned_cols=171 Identities=12% Similarity=0.148 Sum_probs=107.5
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcccc--------------------c---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENNLF--------------------E--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------------------~--- 203 (871)
.....++|.+..++.|.+++..+.++ .+.++|+.|+||||+|+.+.+..--...+ |
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 44567889999999999999877665 46899999999999999998865321111 1
Q ss_pred -c---cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEe-ecCcchhccccCCcce
Q 038510 204 -K---SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLT-ARSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 -~---~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivT-tr~~~va~~~~~~~~~ 272 (871)
. ......+..+.+.+. .++.-++|+|+|... ...+.+...+..-....++|++ |....+.......+..
T Consensus 93 idaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~ 172 (509)
T PRK14958 93 VDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQ 172 (509)
T ss_pred EcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhh
Confidence 1 111222333433332 246678999999765 3455555544443445665554 4444443223334567
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
+++++++.++..+.+.+.+...... --.+....|++.++|.+.-+.
T Consensus 173 ~~f~~l~~~~i~~~l~~il~~egi~-~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 173 FHLAQLPPLQIAAHCQHLLKEENVE-FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred hhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHH
Confidence 8999999998877766665422211 123456788999999875443
No 85
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=1.7e-06 Score=67.74 Aligned_cols=56 Identities=32% Similarity=0.453 Sum_probs=28.5
Q ss_pred cceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCCC
Q 038510 521 GLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGSD 576 (871)
Q Consensus 521 ~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~ 576 (871)
+|++|++++|.+..+| ..+..+++|++|++++|.++. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3455555555555444 234455555555555555544 2345555555555555554
No 86
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.15 E-value=3.9e-05 Score=89.37 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=100.3
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc--------ccc---cc----chh----
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN--------LFE---KS----HET---- 208 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~---~~----~~~---- 208 (871)
.....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+... .|- .. +..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 33456889999888888887766677899999999999999999988764321 121 00 000
Q ss_pred -------------------------------------------------hHHHHHHHHHHcCCcEEEEEecCCCc--cCh
Q 038510 209 -------------------------------------------------VRAGRLLERLKKEKKILIILDDIWGG--LDL 237 (871)
Q Consensus 209 -------------------------------------------------~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~ 237 (871)
.....+.+.+. ++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccc
Confidence 01112222232 24444444433332 234
Q ss_pred hhhccccCCCCCCcEEEE--eecCcchh-ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc
Q 038510 238 EAIGIPLADDNSGCKVLL--TARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL 314 (871)
Q Consensus 238 ~~l~~~l~~~~~gs~iiv--Ttr~~~va-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 314 (871)
+.+...+....+...|++ ||++.... .........+.+.+++.+|.+.++.+.+...... --.++.+.|.+.+..-
T Consensus 310 ~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~L~~ys~~g 388 (615)
T TIGR02903 310 KYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEELIARYTIEG 388 (615)
T ss_pred hhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHCCCcH
Confidence 545444444444444555 66654321 1112233467899999999999999877532111 1134455555555444
Q ss_pred hhHHHHHHHH
Q 038510 315 PIAIVPVARA 324 (871)
Q Consensus 315 PLai~~~~~~ 324 (871)
+-|+..++.+
T Consensus 389 Rraln~L~~~ 398 (615)
T TIGR02903 389 RKAVNILADV 398 (615)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 87
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.14 E-value=4.4e-05 Score=82.69 Aligned_cols=168 Identities=12% Similarity=0.070 Sum_probs=104.3
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---ccc---ccc--hhhHH-HHHHHHHH-
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFE---KSH--ETVRA-GRLLERLK- 219 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~---~~~--~~~~~-~~l~~~l~- 219 (871)
...++|+++.++.+..++..+..+.+.++|..|+||||+|+.+++...... .|- ... ..... ..+.+...
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFART 95 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhc
Confidence 456889999999999999877777789999999999999999998753321 111 011 11111 12222221
Q ss_pred ----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 220 ----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 220 ----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
...+-++++|++.... ..+.+...+......+++|+++... .+..........+++++++.++....+...+.
T Consensus 96 ~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 96 APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHH
Confidence 1235689999986542 2334443333333446677666432 22111122345789999999999888887765
Q ss_pred CCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 293 DCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 293 ~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
.... .--++....+++.++|.+--+
T Consensus 176 ~~~~-~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 176 NEGI-EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 3221 112456788999999987553
No 88
>PRK08727 hypothetical protein; Validated
Probab=98.14 E-value=2.9e-05 Score=79.31 Aligned_cols=165 Identities=14% Similarity=0.103 Sum_probs=95.9
Q ss_pred cccccch-HHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccc---cccc-chhhHHHHHHHHHHcCCcEE
Q 038510 151 MHFESRK-STFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNL---FEKS-HETVRAGRLLERLKKEKKIL 225 (871)
Q Consensus 151 ~~~~gr~-~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~-~~~~~~~~l~~~l~~~kr~L 225 (871)
+.|++.. .....+...........+.|+|..|+|||.|++.+++....++. |-.. ..........+.+. +.-+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~--~~dl 96 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALE--GRSL 96 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHh--cCCE
Confidence 3454333 23333333333333457999999999999999999887654422 1111 11112223334443 3469
Q ss_pred EEEecCCCcc---ChhhhccccCC--CCCCcEEEEeecCcchh--------ccccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 226 IILDDIWGGL---DLEAIGIPLAD--DNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 226 lvlDdv~~~~---~~~~l~~~l~~--~~~gs~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
||+||+.... .|......+.. ...|..||+|++...-. .........+++++++.++-.+++.+.+.
T Consensus 97 LiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 97 VALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred EEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 9999996542 33322111111 12456699999863211 11233356899999999999999998775
Q ss_pred CCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 293 DCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 293 ~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
... -.--+++...|++.++|-.-.+
T Consensus 177 ~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 177 RRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 321 1222466778888888765443
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=2.4e-06 Score=66.80 Aligned_cols=55 Identities=31% Similarity=0.444 Sum_probs=27.2
Q ss_pred CCcEEEecccCCCC-C-cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCC
Q 038510 544 NLQTLCLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKC 598 (871)
Q Consensus 544 ~Lr~L~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~ 598 (871)
+|++|++++|+++. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 44555555555544 2 234455555555555555555543 3445555555555544
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=4.8e-05 Score=83.18 Aligned_cols=165 Identities=11% Similarity=0.040 Sum_probs=105.4
Q ss_pred cccccchHHHHHHHHHhcCCC----------ceEEEEEcCCCCcHhHHHHHHHHHHhhc-------------------cc
Q 038510 151 MHFESRKSTFKEILDALSNRD----------FNMIGVYGMGGIGKTTLVKEVGRQAKEN-------------------NL 201 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 201 (871)
..++|.+..++.+.+++..+. ...+.++|+.|+|||++|+.+++..--. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 457899999999999887543 4568899999999999999997754221 12
Q ss_pred cc-----cc---chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccc
Q 038510 202 FE-----KS---HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCK 266 (871)
Q Consensus 202 F~-----~~---~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~ 266 (871)
.| .. .....+..+.+.+. .+++-++|+|++... ...+.+...+-....+..+|++|.+ ..+....
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTI 164 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHH
Confidence 11 11 11223344444442 245568888999765 3344454444333445556655555 4443222
Q ss_pred cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 267 MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 267 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
......+.+++++.++..+.+....+. ..+.++.++..++|.|.....+
T Consensus 165 rSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 165 RSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred HhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCHHHHHHH
Confidence 344578999999999999888754321 1345778999999999755433
No 91
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.7e-05 Score=88.56 Aligned_cols=172 Identities=14% Similarity=0.108 Sum_probs=108.6
Q ss_pred CccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc----------------------------
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN---------------------------- 199 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------------- 199 (871)
....++|.+..++.+.+++..+.+. .+.++|+.|+||||+|+.+.+..-..
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3567889999999999988876664 48899999999999999998765321
Q ss_pred cccc-----cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEE-EeecCcchhcc
Q 038510 200 NLFE-----KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVL-LTARSQDVLSC 265 (871)
Q Consensus 200 ~~F~-----~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtr~~~va~~ 265 (871)
.||+ .. ...+.+..+.+.+. .+++-++|+|++... ...+.+...+-.-...+.+| +|++...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 1222 11 11233444444442 245668999998655 33555555554333445544 45444444322
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHH
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPV 321 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 321 (871)
....+..+++.+++.++....+.+.+..... .--.+.++.|++.++|..- |+..+
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 3445678999999999988877766542211 1124567889999999653 44433
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.12 E-value=4.8e-05 Score=83.72 Aligned_cols=172 Identities=12% Similarity=0.133 Sum_probs=109.7
Q ss_pred CccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc--------------------cccc----
Q 038510 149 DFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFE---- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~---- 203 (871)
....++|.+..++.+.+++.++.. ..+-++|+.|+||||+|+.+....... .+++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 345678999999999999887665 467889999999999999998775321 1222
Q ss_pred -cc--chhhHHHHHHHHHHc----CCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcc-hhccccCCccee
Q 038510 204 -KS--HETVRAGRLLERLKK----EKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNF 273 (871)
Q Consensus 204 -~~--~~~~~~~~l~~~l~~----~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~ 273 (871)
.. ........+.+.+.. +++-++|+|++... ...+.+...+......+.+|++|.+.. +..........+
T Consensus 92 ~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~ 171 (355)
T TIGR02397 92 DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRF 171 (355)
T ss_pred eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEE
Confidence 11 112233445444431 34558999998654 335555555543344566666665433 222122334678
Q ss_pred eccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 274 FVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 274 ~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
++.+++.++..+.+...+..... .--++.+..|++.++|.|..+...
T Consensus 172 ~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 172 DFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHH
Confidence 99999999998888876642221 111467788999999998655443
No 93
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=6.3e-06 Score=96.71 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=89.3
Q ss_pred CceEEEecCCCCC-ccCcccccCCCcceEEEecCCCCC-CCCCccccccCCcEEEecccCCCC--CcccCCCCCccEEEe
Q 038510 497 QLKYFRIGNDPSL-RIPDNFFTGMTGLKVLDFTEMHLL-PLPSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSL 572 (871)
Q Consensus 497 ~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l 572 (871)
.++.|.+.++... .+|. .+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+.. |..++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 4778888886655 3444 4788999999999999998 889999999999999999999865 678999999999999
Q ss_pred eCCCcc-ccchhhcCC-CCCCEEeCCCCCCCCcc
Q 038510 573 RGSDVE-KLVGEMGQL-TQLRLLDLSKCFELKVI 604 (871)
Q Consensus 573 ~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~~ 604 (871)
++|.+. .+|..++.+ .++..+++.+|..+...
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 999888 889887764 57788888887554433
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.10 E-value=1.3e-05 Score=75.65 Aligned_cols=107 Identities=23% Similarity=0.258 Sum_probs=65.0
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc-cccc---cc--chhhHHH--------H-HHHHHH
Q 038510 155 SRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFE---KS--HETVRAG--------R-LLERLK 219 (871)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~---~~--~~~~~~~--------~-l~~~l~ 219 (871)
|++..++.+...+.....+.+.|+|.+|+||||+|+.+++..... ..+- .. ....... . ......
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAE 81 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhc
Confidence 678888999888877667889999999999999999999987321 1111 00 0000000 0 011112
Q ss_pred cCCcEEEEEecCCCc-----cChhhhccccCC---CCCCcEEEEeecCcc
Q 038510 220 KEKKILIILDDIWGG-----LDLEAIGIPLAD---DNSGCKVLLTARSQD 261 (871)
Q Consensus 220 ~~kr~LlvlDdv~~~-----~~~~~l~~~l~~---~~~gs~iivTtr~~~ 261 (871)
..+..++|+||++.. ..+..+...+.. ...+.+||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 246789999999864 112222222211 135678888887654
No 95
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.09 E-value=0.00022 Score=71.24 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=109.2
Q ss_pred cCCccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc---chhhHHHHHHHHH
Q 038510 147 TQDFMHFESRKSTFKEILDALS-----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS---HETVRAGRLLERL 218 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~---~~~~~~~~l~~~l 218 (871)
+.....|+|.++.++++.=++. ....--+.++|++|.||||||.-+++...+.-+-... ....+...+...|
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiLt~L 101 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAILTNL 101 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHHhcC
Confidence 3445679999998888866665 3456789999999999999999999998875222111 2233445555555
Q ss_pred HcCCcEEEEEecCCCcc-Chhhhc---------cccCCCCCCcEEE-----------EeecCcchhc-cccCCcceeecc
Q 038510 219 KKEKKILIILDDIWGGL-DLEAIG---------IPLADDNSGCKVL-----------LTARSQDVLS-CKMDCQQNFFVD 276 (871)
Q Consensus 219 ~~~kr~LlvlDdv~~~~-~~~~l~---------~~l~~~~~gs~ii-----------vTtr~~~va~-~~~~~~~~~~l~ 276 (871)
. ..=.+++|.+.... ..+++. ......++++|.+ .|||.-.+.. ....-..+.+++
T Consensus 102 e--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rle 179 (332)
T COG2255 102 E--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLE 179 (332)
T ss_pred C--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeee
Confidence 5 33567789986541 111111 1111334455533 5999865542 122234577888
Q ss_pred CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 277 VLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 277 ~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
.-+.+|-.++..+.+..-.. .--++.+.+|+++..|-|--+.-
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHH
Confidence 99999999999988752111 11245688999999999954443
No 96
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.08 E-value=2e-05 Score=79.46 Aligned_cols=168 Identities=17% Similarity=0.175 Sum_probs=111.3
Q ss_pred cCCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc------ccchhh---H-HHHHH-
Q 038510 147 TQDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE------KSHETV---R-AGRLL- 215 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~~~~~~---~-~~~l~- 215 (871)
+.....+.|.+..++-+.+.+.....++...+|++|.|||+-|..++...-....|. ..+... . ..++.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 344567889999999999998888889999999999999999999887665444444 011111 0 11111
Q ss_pred -HHHHc---------CCc-EEEEEecCCCc--cChhhhccccCCCCCCcE-EEEeecCcchhccccCCcceeeccCCCHH
Q 038510 216 -ERLKK---------EKK-ILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLTARSQDVLSCKMDCQQNFFVDVLNEK 281 (871)
Q Consensus 216 -~~l~~---------~kr-~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtr~~~va~~~~~~~~~~~l~~L~~~ 281 (871)
..+.. -++ -.+|||+++.. +.|..+...+-.....+| |+||+--..+..........+..++|.++
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~ 191 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDE 191 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchH
Confidence 11110 123 47888999765 678888777666556666 55554444443323344567899999999
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 282 EAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 282 ~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
+..+-++..+..+...-+ .+..+.|++.++|-=
T Consensus 192 ~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 192 DIVDRLEKIASKEGVDID-DDALKLIAKISDGDL 224 (346)
T ss_pred HHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcH
Confidence 999988888764332222 356788999998853
No 97
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00011 Score=81.20 Aligned_cols=167 Identities=14% Similarity=0.176 Sum_probs=104.0
Q ss_pred CccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc------c--ccc----ccch---hhHHH
Q 038510 149 DFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN------N--LFE----KSHE---TVRAG 212 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~--~F~----~~~~---~~~~~ 212 (871)
....++|.+...+.+.+++..+.. +.+.++|+.|+||||+|+.+.+..... . +|+ .... ...+.
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~ 94 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIR 94 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHH
Confidence 345678999999999999987665 478899999999999999998765431 1 122 0011 12333
Q ss_pred HHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEee-cCcchhccccCCcceeeccCCCHHHHHH
Q 038510 213 RLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTA-RSQDVLSCKMDCQQNFFVDVLNEKEAWS 285 (871)
Q Consensus 213 ~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~va~~~~~~~~~~~l~~L~~~~~~~ 285 (871)
.+.+.+. .+++-++|+|++... ..++.+...+........+|++| ....+..........++.+++++++...
T Consensus 95 ~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~ 174 (367)
T PRK14970 95 NLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKE 174 (367)
T ss_pred HHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHH
Confidence 3333322 135568999998654 23555544343323344555544 3333322223344679999999999998
Q ss_pred HHHHHhCCCCCCchhHHHHHHHHHHcCCchh
Q 038510 286 LFRKMTGDCIENGELKSVATEIVKECAGLPI 316 (871)
Q Consensus 286 Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 316 (871)
.+...+..... .--.+....|++.++|.+-
T Consensus 175 ~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 175 HLAGIAVKEGI-KFEDDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhCCCCHH
Confidence 88876643221 1114577888899998664
No 98
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=5.7e-05 Score=86.90 Aligned_cols=172 Identities=13% Similarity=0.159 Sum_probs=110.6
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc-------------------------c
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN-------------------------L 201 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------------~ 201 (871)
.....++|.+..++.|.+++..++.. .+-++|+.|+||||+|+.+.+..-... |
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 44567899999999999999877654 688999999999999999987643211 0
Q ss_pred cc-----c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEE-eecCcchhcccc
Q 038510 202 FE-----K--SHETVRAGRLLERLK----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLL-TARSQDVLSCKM 267 (871)
Q Consensus 202 F~-----~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iiv-Ttr~~~va~~~~ 267 (871)
-| . ......+..+.+.+. .+++-++|+|++.... ..+.+...+-.-..++++|+ ||....+.....
T Consensus 101 ~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 101 VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH
Confidence 00 0 011223334444432 2356689999996553 35555555544344566554 544444432223
Q ss_pred CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 268 DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 268 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
..+..+++..++.++....+.+.+...... --.+....|++.++|.+.-+..
T Consensus 181 SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 181 SRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 345789999999999999888876432211 1235678899999998865543
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=9.4e-05 Score=75.60 Aligned_cols=164 Identities=10% Similarity=0.053 Sum_probs=91.7
Q ss_pred HHHHHHHHHhc-CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-cccccchhhHHHHHHHHHHcCCcEEEEEecCCCcc
Q 038510 158 STFKEILDALS-NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFEKSHETVRAGRLLERLKKEKKILIILDDIWGGL 235 (871)
Q Consensus 158 ~~~~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~ 235 (871)
.....+.++.. ....+.+.|+|..|+|||+||+.+++....+. .+...+....... .... ...-++|+||+....
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~-~~~~--~~~~~liiDdi~~l~ 103 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA-FDFD--PEAELYAVDDVERLD 103 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH-Hhhc--ccCCEEEEeChhhcC
Confidence 33444555443 23456789999999999999999998763321 1111111111111 1112 133478999996543
Q ss_pred Chh--hhccccCC-CCCCc-EEEEeecCcchhcc-------ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHH
Q 038510 236 DLE--AIGIPLAD-DNSGC-KVLLTARSQDVLSC-------KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVA 304 (871)
Q Consensus 236 ~~~--~l~~~l~~-~~~gs-~iivTtr~~~va~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~ 304 (871)
.+. .+...+.. ...+. .||+|++....... .......++++++++++-..++.+.+.... -.--+++.
T Consensus 104 ~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al 182 (227)
T PRK08903 104 DAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVP 182 (227)
T ss_pred chHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHH
Confidence 322 23222221 12344 36666664322110 122246899999999887777766543211 11224577
Q ss_pred HHHHHHcCCchhHHHHHHHHH
Q 038510 305 TEIVKECAGLPIAIVPVARAL 325 (871)
Q Consensus 305 ~~I~~~c~GlPLai~~~~~~l 325 (871)
+.+++.+.|.+..+..+-..+
T Consensus 183 ~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 183 DYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhccCCHHHHHHHHHHH
Confidence 888889999998877666554
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=6.3e-05 Score=89.53 Aligned_cols=169 Identities=13% Similarity=0.119 Sum_probs=108.8
Q ss_pred CccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc----------------------cccc--
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN----------------------NLFE-- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~F~-- 203 (871)
....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+..--. .+++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 3556889999999999999877665 47899999999999999998776421 1122
Q ss_pred ---c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE-eecCcchhccccCCcc
Q 038510 204 ---K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL-TARSQDVLSCKMDCQQ 271 (871)
Q Consensus 204 ---~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~va~~~~~~~~ 271 (871)
. ......+..+.+.+. .+++-++|||++... ..++.|...+..-...+.+|+ ||....+.......+.
T Consensus 93 eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~ 172 (824)
T PRK07764 93 EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTH 172 (824)
T ss_pred EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhee
Confidence 0 011223333433321 245668999999765 445566555544445555554 4444444322334467
Q ss_pred eeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 272 NFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 272 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
.|++..++.++..+.+.+.+...... --.+....|++.++|.+..+
T Consensus 173 ~v~F~~l~~~~l~~~L~~il~~EGv~-id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 173 HYPFRLVPPEVMRGYLERICAQEGVP-VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 89999999999988887765322211 12345678899999988433
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=7.7e-05 Score=85.37 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=111.8
Q ss_pred CCccccccchHHHHHHHHHhcCCCceE-EEEEcCCCCcHhHHHHHHHHHHhhc----------------------cccc-
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNM-IGVYGMGGIGKTTLVKEVGRQAKEN----------------------NLFE- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~----------------------~~F~- 203 (871)
.....++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+.+..--. .+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 345678899999999999998777655 6899999999999999998764321 1122
Q ss_pred ----cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEE-EeecCcchhccccCCc
Q 038510 204 ----KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVL-LTARSQDVLSCKMDCQ 270 (871)
Q Consensus 204 ----~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtr~~~va~~~~~~~ 270 (871)
.. .....+..+.+.+. .+++-++|+|++... ...+.+...+..-.....+| +||....+.......+
T Consensus 90 ieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc 169 (584)
T PRK14952 90 VELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 (584)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhc
Confidence 11 11223334443332 245669999999755 34555555554434455544 5555555442223346
Q ss_pred ceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHHHH
Q 038510 271 QNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPVARAL 325 (871)
Q Consensus 271 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~~l 325 (871)
..+++.+++.++..+.+.+.+...... --.+....|++.++|.+- |+..+-.++
T Consensus 170 ~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 170 HHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 789999999999888887765432211 113456778999999774 444444433
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.01 E-value=8.2e-05 Score=82.08 Aligned_cols=190 Identities=15% Similarity=0.230 Sum_probs=109.9
Q ss_pred ccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------
Q 038510 150 FMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS----------- 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~----------- 205 (871)
...+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+++++..... |-..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~--~i~v~~~~l~~~~~g 207 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--FIRVVGSELVQKFIG 207 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC--EEEeehHHHhHhhcc
Confidence 4467899999988888663 1 234568999999999999999999876542 3311
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc------------C-hhhhcccc---C--CCCCCcEEEEeecCcchhc-cc
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL------------D-LEAIGIPL---A--DDNSGCKVLLTARSQDVLS-CK 266 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~-~~~l~~~l---~--~~~~gs~iivTtr~~~va~-~~ 266 (871)
........+.+......+.+|+|||+.... . ...+...+ . ....+.+||.||....... ..
T Consensus 208 ~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~al 287 (389)
T PRK03992 208 EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAI 287 (389)
T ss_pred chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHH
Confidence 111223334444444567899999996531 0 11121111 1 1123556777776643321 11
Q ss_pred c---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch-hHHHHH---HHHH--hc-C---ChhHH
Q 038510 267 M---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP-IAIVPV---ARAL--IN-K---RLFEW 333 (871)
Q Consensus 267 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~---~~~l--~~-~---~~~~w 333 (871)
. .-+..+++++.+.++-.++|+.++......... ....+++.+.|.- --+..+ |++. +. . +.++.
T Consensus 288 lRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~ 365 (389)
T PRK03992 288 LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTMEDF 365 (389)
T ss_pred cCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 1 224579999999999999999887643222111 1355677777653 222222 2222 21 1 56666
Q ss_pred HHHHHHhcCC
Q 038510 334 KDSLLELRRP 343 (871)
Q Consensus 334 ~~~~~~l~~~ 343 (871)
..+++.....
T Consensus 366 ~~A~~~~~~~ 375 (389)
T PRK03992 366 LKAIEKVMGK 375 (389)
T ss_pred HHHHHHHhcc
Confidence 6666665443
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=7.4e-05 Score=85.14 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=111.8
Q ss_pred CccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc----
Q 038510 149 DFMHFESRKSTFKEILDALSNRD-FNMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE---- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~---- 203 (871)
....++|.+..++.|.+++..++ ...+.++|+.|+||||+|+.+.+..-... |.|
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 34567899888888888887665 46788899999999999999987764321 111
Q ss_pred -c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCccee
Q 038510 204 -K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQNF 273 (871)
Q Consensus 204 -~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~~ 273 (871)
. ......+..+.+.+. .+++-++|+|++... ..++.+...+..-.....+|++|.+ ..+..........+
T Consensus 94 d~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i 173 (624)
T PRK14959 94 DGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHF 173 (624)
T ss_pred ecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhcc
Confidence 0 111222333433332 246679999999655 3455555554332234455554444 44432222334688
Q ss_pred eccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch-hHHHHHHHHHh
Q 038510 274 FVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP-IAIVPVARALI 326 (871)
Q Consensus 274 ~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~l~ 326 (871)
++++++.++....+...+..... .--.+..+.|++.++|.+ .|+..+..++.
T Consensus 174 ~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 174 TFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999888876643221 112456788999999965 67777665543
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=6.3e-05 Score=85.90 Aligned_cols=173 Identities=14% Similarity=0.176 Sum_probs=108.1
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~--- 203 (871)
.....++|.+..++.+.+++..++.+ .+.++|+.|+||||+|+.+....-... +-|
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34556889999999999999876665 467999999999999999987653210 101
Q ss_pred --c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEee-cCcchhccccCCcce
Q 038510 204 --K--SHETVRAGRLLERLK----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTA-RSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt-r~~~va~~~~~~~~~ 272 (871)
. ......+..+.+... .+++-++|+|++.... ..+.+...+........+|++| ....+.......+..
T Consensus 93 i~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~ 172 (527)
T PRK14969 93 VDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQ 172 (527)
T ss_pred eeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHH
Confidence 0 111222333444332 2466799999997653 3455555554433455555544 444443212233578
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPV 321 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 321 (871)
+++++++.++..+.+.+.+...... .-++..+.|++.++|.+- |+..+
T Consensus 173 ~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 173 FNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999988887766422211 123556789999999774 44443
No 105
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00011 Score=85.26 Aligned_cols=168 Identities=14% Similarity=0.145 Sum_probs=109.5
Q ss_pred ccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHh---------------------hccccc----
Q 038510 150 FMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAK---------------------ENNLFE---- 203 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~---------------------~~~~F~---- 203 (871)
...++|.+..++.+..++..+.+. .+.++|+.|+||||+|+.+....- ...+|+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l 95 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL 95 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence 456889999999999999877665 478999999999999999887653 112343
Q ss_pred -cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEE-EeecCcchhccccCCccee
Q 038510 204 -KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVL-LTARSQDVLSCKMDCQQNF 273 (871)
Q Consensus 204 -~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtr~~~va~~~~~~~~~~ 273 (871)
.. .....+..+.+.+. .+++-++|+|++... ..++.+...+..-..++.+| +||+...+.......+.++
T Consensus 96 d~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv 175 (614)
T PRK14971 96 DAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIF 175 (614)
T ss_pred cccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhee
Confidence 11 11223333333332 245668999998765 34556655554434455554 4555455443234446789
Q ss_pred eccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 274 FVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 274 ~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
++++++.++....+.+.+..... .--.+.+..|++.++|..--+
T Consensus 176 ~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 176 DFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 99999999999888876653221 112356788999999976443
No 106
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.96 E-value=0.00014 Score=83.82 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=99.2
Q ss_pred cccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc------ccc-----c---cc-----
Q 038510 151 MHFESRKSTFKEILDALS-----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN------LFE-----K---SH----- 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~-----~---~~----- 206 (871)
..+.||++++++|...|. .....++.|+|++|+|||+.++.|.+...... .|. . ..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 346799999999988776 22335778999999999999999987764311 132 0 00
Q ss_pred -----------------hhhHHHHHHHHHHc--CCcEEEEEecCCCccC--hhhhccccC-CCCCCcEEEE--eecCcch
Q 038510 207 -----------------ETVRAGRLLERLKK--EKKILIILDDIWGGLD--LEAIGIPLA-DDNSGCKVLL--TARSQDV 262 (871)
Q Consensus 207 -----------------~~~~~~~l~~~l~~--~kr~LlvlDdv~~~~~--~~~l~~~l~-~~~~gs~iiv--Ttr~~~v 262 (871)
.......+...+.+ +...+||||+|..... -+.+...+. ....+++|+| +|.....
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 00112233333321 1235899999975521 111211111 1224556444 3332221
Q ss_pred h-------ccccCCcceeeccCCCHHHHHHHHHHHhCCC---CCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 038510 263 L-------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDC---IENGELKSVATEIVKECAGLPIAIVPVARALI 326 (871)
Q Consensus 263 a-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~ 326 (871)
. ...+. ...+..+|.+.++-.+++..++... ..+..++-+|+.++..-|..-.||.++-.+..
T Consensus 915 perLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 915 PERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 1 00111 2346779999999999999987632 22333444555555455566677777766654
No 107
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=3.7e-07 Score=90.72 Aligned_cols=81 Identities=30% Similarity=0.370 Sum_probs=42.7
Q ss_pred CCcEEEecccCCCC--C-cccCCCCCccEEEeeCCCcc-ccchhhcCCCCCCEEeCCCCCCCCccChh-hhhCCCCCcEE
Q 038510 544 NLQTLCLNYCNLGD--I-AIIGDLKKLEILSLRGSDVE-KLVGEMGQLTQLRLLDLSKCFELKVIPPN-VISSLSRLEEL 618 (871)
Q Consensus 544 ~Lr~L~L~~~~i~~--~-~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~-~i~~L~~L~~L 618 (871)
.|++|||+...|+. + .-+..|.+|+.|.+.++.+. .+-..+.+-.+|+.|+++.|+.++..... .+.+++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 46666666666544 2 23445566666666665544 22334555566666666666555443322 13445555555
Q ss_pred ecccCC
Q 038510 619 YIGESP 624 (871)
Q Consensus 619 ~l~~~~ 624 (871)
++++|.
T Consensus 266 NlsWc~ 271 (419)
T KOG2120|consen 266 NLSWCF 271 (419)
T ss_pred CchHhh
Confidence 555544
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00012 Score=84.89 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=108.6
Q ss_pred CccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc-----------------cccc-----cc
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN-----------------NLFE-----KS 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-----------------~~F~-----~~ 205 (871)
....++|.+..++.+.+++..+++. .+.++|+.|+||||+|+.++...-.. .+++ ..
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 3556889999999999999876654 56789999999999999998654211 1112 10
Q ss_pred --chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcE-EEEeecCcchhccccCCcceeecc
Q 038510 206 --HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLTARSQDVLSCKMDCQQNFFVD 276 (871)
Q Consensus 206 --~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtr~~~va~~~~~~~~~~~l~ 276 (871)
.....+..+.+.+. .+++-++|+|++... ..++.+...+-....... |++||+...+.......+..+++.
T Consensus 96 sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~ 175 (725)
T PRK07133 96 SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFR 175 (725)
T ss_pred ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEcc
Confidence 11233445555543 246669999998754 345555544433333444 455555555542223345689999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHH
Q 038510 277 VLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPV 321 (871)
Q Consensus 277 ~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 321 (871)
+++.++..+.+...+...... --.+.++.|++.++|.+- |+..+
T Consensus 176 ~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 176 RISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999988888765422111 113457789999999764 44433
No 109
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1e-06 Score=98.72 Aligned_cols=127 Identities=28% Similarity=0.411 Sum_probs=90.8
Q ss_pred CCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeC
Q 038510 495 CPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRG 574 (871)
Q Consensus 495 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~ 574 (871)
+..+..+.+..+.+..+. +.+..+..|..|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++.+
T Consensus 71 l~~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheecc
Confidence 344444444444433321 2256678888888888888877665778888888888888888888888888888888888
Q ss_pred CCccccchhhcCCCCCCEEeCCCCCCCCccCh-hhhhCCCCCcEEecccCCC
Q 038510 575 SDVEKLVGEMGQLTQLRLLDLSKCFELKVIPP-NVISSLSRLEELYIGESPI 625 (871)
Q Consensus 575 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~ 625 (871)
|.|..++. +..+++|+.+++++| .+..+.. . ...+.+|+.+++.++.+
T Consensus 150 N~i~~~~~-~~~l~~L~~l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 150 NLISDISG-LESLKSLKLLDLSYN-RIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred CcchhccC-CccchhhhcccCCcc-hhhhhhhhh-hhhccchHHHhccCCch
Confidence 88887754 556888888888887 4455544 2 36778888888877764
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00011 Score=82.76 Aligned_cols=173 Identities=15% Similarity=0.141 Sum_probs=108.6
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc--------------------cccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~--- 203 (871)
.....++|.+...+.+..++..++.+ +..++|+.|+||||+|+.+.+..-.. .|++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 34556889999999999998877665 55899999999999999888764210 1222
Q ss_pred -ccch---hhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 204 -KSHE---TVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 204 -~~~~---~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
.... ...+..+.+... .+++-++|+|++... +..+.+...+-.-...+++|++|.+ ..+.......+..
T Consensus 91 ldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~ 170 (535)
T PRK08451 91 MDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQH 170 (535)
T ss_pred eccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhcee
Confidence 1111 122223332221 145668999999655 3344554444333445666655554 3332222333578
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
+++.+++.++..+.+.+.+...... --++..+.|++.++|.+--+...
T Consensus 171 ~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 171 FRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999988887766432211 12456788999999988544443
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.93 E-value=7.3e-05 Score=80.75 Aligned_cols=142 Identities=14% Similarity=0.115 Sum_probs=83.1
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc-cccccc-hhhHH-HHHHHHHH----
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN-LFEKSH-ETVRA-GRLLERLK---- 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~-~~~~~-~~l~~~l~---- 219 (871)
.....++|.++..+.+..++..+.. .++.++|++|+||||+|+.+++.....- .++... ..... ..+.+...
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~ 97 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSL 97 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcc
Confidence 4456688999999999999887665 4666699999999999999998753211 111111 11111 11221111
Q ss_pred cCCcEEEEEecCCCc--cCh-hhhccccCCCCCCcEEEEeecCcchh-ccccCCcceeeccCCCHHHHHHHHHH
Q 038510 220 KEKKILIILDDIWGG--LDL-EAIGIPLADDNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFRK 289 (871)
Q Consensus 220 ~~kr~LlvlDdv~~~--~~~-~~l~~~l~~~~~gs~iivTtr~~~va-~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (871)
.+.+-++|+||+... ... +.+...+.....+.++|+||...... .........+.++..+.++..+++..
T Consensus 98 ~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 98 TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 124568999999755 112 22332233334567888888654321 11122334677777777777666544
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.93 E-value=8.4e-05 Score=89.70 Aligned_cols=164 Identities=14% Similarity=0.140 Sum_probs=98.0
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc--------ccc---------cc----chh
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN--------LFE---------KS----HET 208 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~---------~~----~~~ 208 (871)
...++||++++.+++..|......-+.++|.+|+||||+|+.++....... +|. .. ...
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e 265 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFE 265 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHH
Confidence 356899999999999998876666778999999999999999998764221 111 00 011
Q ss_pred hHHHHHHHHHH-cCCcEEEEEecCCCcc-------Chh--hhccccCCCCCCcEEEEeecCcch----h--ccccCCcce
Q 038510 209 VRAGRLLERLK-KEKKILIILDDIWGGL-------DLE--AIGIPLADDNSGCKVLLTARSQDV----L--SCKMDCQQN 272 (871)
Q Consensus 209 ~~~~~l~~~l~-~~kr~LlvlDdv~~~~-------~~~--~l~~~l~~~~~gs~iivTtr~~~v----a--~~~~~~~~~ 272 (871)
..+..+.+.+. .+++.+|++|++.... .-+ .+..+....+ .-++|-||...+. . ......-..
T Consensus 266 ~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~~~~~~d~AL~rRf~~ 344 (852)
T TIGR03345 266 NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYKKYFEKDPALTRRFQV 344 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHhhhhhccHHHHHhCeE
Confidence 23344444443 2468999999986531 111 1222222222 2345555544221 1 112223468
Q ss_pred eeccCCCHHHHHHHHHHHhCCCC---CCchhHHHHHHHHHHcCCc
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCI---ENGELKSVATEIVKECAGL 314 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~---~~~~l~~~~~~I~~~c~Gl 314 (871)
+.+++++.++..++++....... .-.-..+..+.+++.+++.
T Consensus 345 i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 345 VKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 99999999999999865543211 1111244556677766544
No 113
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00028 Score=79.07 Aligned_cols=173 Identities=13% Similarity=0.115 Sum_probs=107.7
Q ss_pred CccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc---------------------cccc---
Q 038510 149 DFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN---------------------NLFE--- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~--- 203 (871)
....++|.+..++.+.+++..+.. ..+.++|+.|+||||+|+.+.+..-.. .+++
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 345688999999999999987665 567899999999999999998765321 1222
Q ss_pred --ccc--hhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 204 --KSH--ETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~~--~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
... ....+..+.+.+. .+++-++|+|++... ...+.+...+.....+..+|++|.. ..+..........
T Consensus 95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~ 174 (451)
T PRK06305 95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQK 174 (451)
T ss_pred eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceE
Confidence 111 1123333333332 246678999998644 2344454444433345566655533 3332222334568
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch-hHHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP-IAIVPVA 322 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~ 322 (871)
+++.++++++..+.+.+.+..... .--++.++.|++.++|.+ .|+..+-
T Consensus 175 v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 175 MHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999988888776542211 112456788999999976 4444433
No 114
>PRK05642 DNA replication initiation factor; Validated
Probab=97.85 E-value=0.00013 Score=74.53 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=87.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhccc---cccc-chhhHHHHHHHHHHcCCcEEEEEecCCCc---cChhh-hcccc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNL---FEKS-HETVRAGRLLERLKKEKKILIILDDIWGG---LDLEA-IGIPL 244 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~-~~~~~~~~l~~~l~~~kr~LlvlDdv~~~---~~~~~-l~~~l 244 (871)
..+.|+|..|+|||.|++.+++....+.+ |-.. ........+.+.+.+ - =++|+||+... ..|+. +...+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~-~-d~LiiDDi~~~~~~~~~~~~Lf~l~ 123 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQ-Y-ELVCLDDLDVIAGKADWEEALFHLF 123 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhh-C-CEEEEechhhhcCChHHHHHHHHHH
Confidence 57899999999999999999886543211 1111 111112334444442 2 26889999643 35543 32222
Q ss_pred CC-CCCCcEEEEeecCcchh--------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 245 AD-DNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 245 ~~-~~~gs~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.. ...|.+||+|++...-. ..+.....+++++++++++-.+++++++.... -.--+++..-|++++.|..
T Consensus 124 n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 124 NRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG-LHLTDEVGHFILTRGTRSM 202 (234)
T ss_pred HHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 11 23456788888763221 11233456799999999999999986664321 1122577888888888876
Q ss_pred hHHHH
Q 038510 316 IAIVP 320 (871)
Q Consensus 316 Lai~~ 320 (871)
-++..
T Consensus 203 r~l~~ 207 (234)
T PRK05642 203 SALFD 207 (234)
T ss_pred HHHHH
Confidence 54443
No 115
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00023 Score=81.70 Aligned_cols=172 Identities=12% Similarity=0.136 Sum_probs=109.2
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc--------------------cccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~--- 203 (871)
.....++|.+..++.+..++..++.+ .+.++|+.|+||||+|+.+++..-.. .+++
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~ 92 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE 92 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE
Confidence 34567889999999999999876654 57899999999999999998865321 1233
Q ss_pred --cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEee-cCcchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTA-RSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTt-r~~~va~~~~~~~~~ 272 (871)
.. .....+..+.+.+. .+++-++|+|++... ..++.+...+..-.....+|.+| ....+..........
T Consensus 93 idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~ 172 (563)
T PRK06647 93 IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQH 172 (563)
T ss_pred ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceE
Confidence 11 11223333333322 246678999998655 34566655554434455555444 434443222333567
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
++..+++.++..+.+.+.+..... .--++....|++.++|.+-.+..
T Consensus 173 ~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 173 FNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 899999999988888776643221 12245677899999998754433
No 116
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.6e-05 Score=56.85 Aligned_cols=37 Identities=35% Similarity=0.513 Sum_probs=16.5
Q ss_pred cceEEEecCCCCCCCCCccccccCCcEEEecccCCCC
Q 038510 521 GLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD 557 (871)
Q Consensus 521 ~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~ 557 (871)
+|++|++++|.|+.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444555555544444444444444444444444443
No 117
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.4e-07 Score=89.56 Aligned_cols=186 Identities=19% Similarity=0.186 Sum_probs=108.8
Q ss_pred CCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeecc-CCCCCc
Q 038510 588 TQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQD-EKTIPS 666 (871)
Q Consensus 588 ~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~-~~~~~~ 666 (871)
..|++|+++.......--.+++..+.+|+.|.+.++... +.....+.+=.+|+.|+++... ..+...
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld------------D~I~~~iAkN~~L~~lnlsm~sG~t~n~~ 252 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD------------DPIVNTIAKNSNLVRLNLSMCSGFTENAL 252 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC------------cHHHHHHhccccceeeccccccccchhHH
Confidence 358888887642222222345677888888888776543 2234456666788888887433 333322
Q ss_pred c--hhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCceecccc-CCCCC
Q 038510 667 D--LLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCE-PGREG 743 (871)
Q Consensus 667 ~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~ 743 (871)
. +.+++.|..|++.+|..... ..---+...-++|+.|+|+||...-..... .....
T Consensus 253 ~ll~~scs~L~~LNlsWc~l~~~---------------------~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 253 QLLLSSCSRLDELNLSWCFLFTE---------------------KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred HHHHHhhhhHhhcCchHhhccch---------------------hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 2 26677777777766642211 000011222367888888887532111100 01257
Q ss_pred CCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCC
Q 038510 744 FPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 744 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~ 813 (871)
+|+|.+|+|++|..+.. ......-.|+.|++|+++.|-.+- |...+....+|+|.+|++.+|-
T Consensus 312 cp~l~~LDLSD~v~l~~-----~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKN-----DCFQEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCc-----hHHHHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 89999999998875543 233345568888888888874431 1112334578888888888883
No 118
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=2.5e-06 Score=95.59 Aligned_cols=121 Identities=21% Similarity=0.278 Sum_probs=93.4
Q ss_pred cceeecccCCcCcCCC-CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQ-GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 554 (871)
+..+++..+.+..+.. ...+.+|..|.+.++.+..+... +..+.+|++|++++|.|+.+. .+..+..|+.|++.+|.
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL 151 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCc
Confidence 3344455555554222 34678888888888777766553 567899999999999998774 56778889999999999
Q ss_pred CCCCcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCC
Q 038510 555 LGDIAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKC 598 (871)
Q Consensus 555 i~~~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 598 (871)
|..++.+..+.+|+.+++.+|.+..+... ...+.+|+.+.+.+|
T Consensus 152 i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 152 ISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 98888888899999999999988887764 578889999988886
No 119
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.82 E-value=2.7e-06 Score=86.94 Aligned_cols=238 Identities=18% Similarity=0.159 Sum_probs=107.8
Q ss_pred CCCcceEEEecCCCCC-----CCCCccccccCCcEEEecccCCCC-----C-------cccCCCCCccEEEeeCCCcc--
Q 038510 518 GMTGLKVLDFTEMHLL-----PLPSSLGLLQNLQTLCLNYCNLGD-----I-------AIIGDLKKLEILSLRGSDVE-- 578 (871)
Q Consensus 518 ~l~~Lr~L~l~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----~-------~~i~~l~~L~~L~l~~~~i~-- 578 (871)
.+..+..++|+||.+. .+-..+.+.++|+.-++++-.... | +.+-.+++|++|||++|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3455566666666554 122334444555555555432111 1 12344556777777766433
Q ss_pred ---ccchhhcCCCCCCEEeCCCCCCCCccChhh-------------hhCCCCCcEEecccCCCCccccccccchhcccch
Q 038510 579 ---KLVGEMGQLTQLRLLDLSKCFELKVIPPNV-------------ISSLSRLEELYIGESPIQWGTVEGLDSERRNASL 642 (871)
Q Consensus 579 ---~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~-------------i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 642 (871)
.+-.-+.++..|++|.+.+| .++...... +++-+.|+.+....|.+.... .....
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g--------a~~~A 178 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG--------ATALA 178 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc--------HHHHH
Confidence 22233556677777777666 333222111 233355666666665543211 01122
Q ss_pred hhhccCCCCCeEEEeeccCCC-----CCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhh
Q 038510 643 HELNHLSKLTSLEILIQDEKT-----IPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQ 717 (871)
Q Consensus 643 ~~L~~L~~L~~L~i~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~ 717 (871)
..++..+.|..+.+..+.+.. +...+..+++|+.|++..+..... -+-.....+| .
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e--------------gs~~LakaL~-----s 239 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE--------------GSVALAKALS-----S 239 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH--------------HHHHHHHHhc-----c
Confidence 334555566666665544321 111223445555555432211000 0000000111 2
Q ss_pred hcccceEEeeccCCceecccc---CCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccc
Q 038510 718 LKGIEDLSLHGLLDMKNVLCE---PGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDL 785 (871)
Q Consensus 718 l~~L~~L~L~~~~~~~~~~~~---~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~ 785 (871)
+++|+.|.+.+|..-...... ..-...|+|+.|.+.+|. +++= ...........-|.|+.|.+++|
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~d-a~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRD-AALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHH-HHHHHHHHHhcchhhHHhcCCcc
Confidence 256777777766433221100 011447888888888763 2210 00001112233688888888874
No 120
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00029 Score=81.22 Aligned_cols=171 Identities=13% Similarity=0.128 Sum_probs=107.0
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc--------------------cccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~--- 203 (871)
.....++|.+...+.+.+++..++. ..+.++|+.|+||||+|+.+....-.. .++|
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 4456788999999999999986654 456789999999999999997764321 1222
Q ss_pred --cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcE-EEEeecCcchhccccCCcce
Q 038510 204 --KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLTARSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtr~~~va~~~~~~~~~ 272 (871)
.. .....+..+.+.+. .+++-++|+|++... ..++.+...+..-..... |+.||....+..........
T Consensus 93 idaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~ 172 (559)
T PRK05563 93 IDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQR 172 (559)
T ss_pred eeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheE
Confidence 11 11223344444432 346678899999755 345555544433233444 44455444443222334567
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
++..+++.++..+.+...+...... --.+....|++.++|.+..+.
T Consensus 173 ~~f~~~~~~ei~~~L~~i~~~egi~-i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 173 FDFKRISVEDIVERLKYILDKEGIE-YEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 8899999999988888766422211 113567788889988775433
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.81 E-value=8.2e-05 Score=89.16 Aligned_cols=141 Identities=15% Similarity=0.179 Sum_probs=86.8
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc--------cccccc-------------chh
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFEKS-------------HET 208 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~~~-------------~~~ 208 (871)
..+++||++++++++..|......-+.++|++|+|||++|+.+++..... .+|-.. ...
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 35688999999999998886666677899999999999999999876321 111110 111
Q ss_pred hHHHHHHHHHHcCCcEEEEEecCCCcc----------ChhhhccccCCCCCCcEEE-EeecCc---chh--ccccCCcce
Q 038510 209 VRAGRLLERLKKEKKILIILDDIWGGL----------DLEAIGIPLADDNSGCKVL-LTARSQ---DVL--SCKMDCQQN 272 (871)
Q Consensus 209 ~~~~~l~~~l~~~kr~LlvlDdv~~~~----------~~~~l~~~l~~~~~gs~ii-vTtr~~---~va--~~~~~~~~~ 272 (871)
..+..+.+.+.+.++.+|++|++.... +...+..+....+ .-++| .||+.+ ... ......-..
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~ 339 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKNHFEKDRALSRRFQK 339 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHHHhhhhHHHHHhCce
Confidence 234445555544567999999986331 1112222221222 12344 455421 111 111122357
Q ss_pred eeccCCCHHHHHHHHHHHh
Q 038510 273 FFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~ 291 (871)
++++.++.++..+++....
T Consensus 340 i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 340 IDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 8999999999999998654
No 122
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.80 E-value=0.00014 Score=88.32 Aligned_cols=139 Identities=14% Similarity=0.224 Sum_probs=86.4
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc--------ccccc-------------cchhh
Q 038510 151 MHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFEK-------------SHETV 209 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~~-------------~~~~~ 209 (871)
.+++||++++++++++|......-+.++|++|+|||++|+.++...... ..|.. .....
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~ 258 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEE 258 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHH
Confidence 4688999999999999986655666799999999999999998876421 11210 01122
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCcc---------ChhhhccccCCCCCCcEEEEeecCcch----h--ccccCCcceee
Q 038510 210 RAGRLLERLKKEKKILIILDDIWGGL---------DLEAIGIPLADDNSGCKVLLTARSQDV----L--SCKMDCQQNFF 274 (871)
Q Consensus 210 ~~~~l~~~l~~~kr~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iivTtr~~~v----a--~~~~~~~~~~~ 274 (871)
.+..+.+.+...++.+|++|++.... +...+..+....+. -++|.+|...+. . ........++.
T Consensus 259 rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~-l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~ 337 (821)
T CHL00095 259 RLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE-LQCIGATTLDEYRKHIEKDPALERRFQPVY 337 (821)
T ss_pred HHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC-cEEEEeCCHHHHHHHHhcCHHHHhcceEEe
Confidence 44455555555578999999995321 11222222212222 344444444322 1 11223345788
Q ss_pred ccCCCHHHHHHHHHHH
Q 038510 275 VDVLNEKEAWSLFRKM 290 (871)
Q Consensus 275 l~~L~~~~~~~Lf~~~ 290 (871)
++..+.++...+++..
T Consensus 338 v~ep~~~e~~aILr~l 353 (821)
T CHL00095 338 VGEPSVEETIEILFGL 353 (821)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 8999999988888754
No 123
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=8.9e-06 Score=95.06 Aligned_cols=124 Identities=22% Similarity=0.256 Sum_probs=87.4
Q ss_pred cccceeecccCCcC--cCCC--CCCCCCceEEEecCCCC-CccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEE
Q 038510 474 KVCTAISLIYSNIS--ELPQ--GFECPQLKYFRIGNDPS-LRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTL 548 (871)
Q Consensus 474 ~~~~~lsl~~~~~~--~l~~--~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L 548 (871)
.++++|++++...- .-+. ..-+|.|++|.+.+-.. ..--...+.++++|+.||+++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46778888764321 1111 12688999999987222 111234567899999999999999887 778999999999
Q ss_pred EecccCCCC---CcccCCCCCccEEEeeCCCccccchh-------hcCCCCCCEEeCCCC
Q 038510 549 CLNYCNLGD---IAIIGDLKKLEILSLRGSDVEKLVGE-------MGQLTQLRLLDLSKC 598 (871)
Q Consensus 549 ~L~~~~i~~---~~~i~~l~~L~~L~l~~~~i~~lp~~-------i~~L~~L~~L~l~~~ 598 (871)
.+++-.+.. +..+.+|++|++||++......-+.- -..|++||.|+.++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 998877754 56788999999999988744433311 124889999998875
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00034 Score=81.45 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=108.3
Q ss_pred CccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc---------------------ccc---
Q 038510 149 DFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN---------------------LFE--- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~--- 203 (871)
....++|.+..++.|..++..+.+ ..+.++|+.|+||||+|+.+++...... |.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~ 93 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIE 93 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEE
Confidence 345688999999999998886655 4568999999999999999987653211 111
Q ss_pred --c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 204 --K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
. ......+..+.+.+. .+++-++|+|++... ...+.+...+........+|++|.+ ..+..........
T Consensus 94 i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~ 173 (585)
T PRK14950 94 MDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQR 173 (585)
T ss_pred EeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccce
Confidence 0 011122333444332 145679999998654 3455555444333345566655543 3332212233467
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
+.++.++.++....+.+.+...... --.+....|++.++|.+..+...
T Consensus 174 i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 174 FDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 8899999999988888776532211 12356788999999988654443
No 125
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.78 E-value=0.00024 Score=74.19 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=76.8
Q ss_pred ccccchHHHHHHH---HHhc------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc-----ccccccch----
Q 038510 152 HFESRKSTFKEIL---DALS------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-----NLFEKSHE---- 207 (871)
Q Consensus 152 ~~~gr~~~~~~l~---~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~~---- 207 (871)
.++|.+..++++. .|.. .+....+.++|++|+||||+|+.+++..... .+|-....
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 4667766655543 3331 1234578899999999999999998765321 11210000
Q ss_pred ----hhHHHHHHHHHHcCCcEEEEEecCCCcc----------ChhhhccccCCCCCCcEEEEeecCcchh-------ccc
Q 038510 208 ----TVRAGRLLERLKKEKKILIILDDIWGGL----------DLEAIGIPLADDNSGCKVLLTARSQDVL-------SCK 266 (871)
Q Consensus 208 ----~~~~~~l~~~l~~~kr~LlvlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtr~~~va-------~~~ 266 (871)
......+.+.+.+...-+|++|++.... ..+.+...+........+|+++...+.. ...
T Consensus 87 ~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~ 166 (261)
T TIGR02881 87 GEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLR 166 (261)
T ss_pred hhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHH
Confidence 0012223333433234589999997531 1223333332222333455555433220 001
Q ss_pred cCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 267 MDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 267 ~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
......+.+++++.++-.+++.+.+.
T Consensus 167 sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 167 SRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred hccceEEEECCCCHHHHHHHHHHHHH
Confidence 12235688999999999999987764
No 126
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00045 Score=77.95 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=105.5
Q ss_pred CccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc---c------c-----cc----------
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN---N------L-----FE---------- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~---~------~-----F~---------- 203 (871)
....++|.+.....+.+++..+... .+.++|+.|+||||+|+.++...-.. . + ++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3456789999999999999876654 45789999999999999988764310 0 0 00
Q ss_pred -cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE-eecCcchhccccCCccee
Q 038510 204 -KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL-TARSQDVLSCKMDCQQNF 273 (871)
Q Consensus 204 -~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~va~~~~~~~~~~ 273 (871)
.. .....+..+.+.+. .+++-++|+|++... ...+.+...+........+|+ ||+...+..........+
T Consensus 94 daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i 173 (486)
T PRK14953 94 DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRF 173 (486)
T ss_pred eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEE
Confidence 00 11222344444442 246679999998754 334555444433333445444 444433332122334678
Q ss_pred eccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 274 FVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 274 ~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
.+.+++.++....+.+.+..... .--.+....|++.++|.+..+...
T Consensus 174 ~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 174 IFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999988888876642221 112355777888999977544443
No 127
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0003 Score=81.48 Aligned_cols=176 Identities=13% Similarity=0.145 Sum_probs=109.9
Q ss_pred CCccccccchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~--- 203 (871)
.....++|.+..++.|.+++..++++ .+.++|+.|+||||+|+.+.+..-... ++|
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 34567889999999999998877664 568999999999999999987643211 111
Q ss_pred --c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEE-EeecCcchhccccCCcce
Q 038510 204 --K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVL-LTARSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 --~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtr~~~va~~~~~~~~~ 272 (871)
. ......+..+.+.+. .+++-++|+|++... ...+.+...+-.-.....+| +||....+.......+..
T Consensus 93 id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~ 172 (576)
T PRK14965 93 IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQR 172 (576)
T ss_pred eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhh
Confidence 1 111223444554443 235568999999755 23445544443333455544 555555554323344568
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch-hHHHHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP-IAIVPVARA 324 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~ 324 (871)
+++.+++.++....+...+...... --.+....|++.++|.. .|+..+-.+
T Consensus 173 ~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 173 FDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8999999999888777665422211 12355778899999865 454444333
No 128
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=6.3e-07 Score=99.12 Aligned_cols=173 Identities=22% Similarity=0.170 Sum_probs=109.6
Q ss_pred ccccceeecccCCcCcCCCCCC-CCCceEEEecCC----------CCCccCcccccCCCcceEEEecCCCCCCCCCcccc
Q 038510 473 LKVCTAISLIYSNISELPQGFE-CPQLKYFRIGND----------PSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGL 541 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~-~~~L~~L~l~~~----------~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~ 541 (871)
+..+|+|-+.++++........ -.+|+.|++.+. ...++..+ + --..|.+.++++|.+..+..++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns-~-~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNS-P-VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccc-h-hhhhHhhhhcchhhHHhHHHHHHH
Confidence 5577888888877755332221 234445544331 11111111 0 123567777777877777777777
Q ss_pred ccCCcEEEecccCCCCCcccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEec
Q 038510 542 LQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYI 620 (871)
Q Consensus 542 l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 620 (871)
+++|+.|+|+.|++.....+..|++|.+|||++|.+..+|. +...+. |+.|.+++| .++.+-. +.+|.+|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~g--ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLRG--IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhhh--HHhhhhhhccch
Confidence 88888888888888777778888888888888888877774 233333 888888876 5555543 678888888888
Q ss_pred ccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCC
Q 038510 621 GESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEK 662 (871)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~ 662 (871)
+.|.+.. -..+..|..|..|+.|.+.+|...
T Consensus 262 syNll~~-----------hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSE-----------HSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhc-----------chhhhHHHHHHHHHHHhhcCCccc
Confidence 7765421 123455666667777777766543
No 129
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.71 E-value=0.00073 Score=74.25 Aligned_cols=163 Identities=15% Similarity=0.226 Sum_probs=95.7
Q ss_pred CccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc----------
Q 038510 149 DFMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS---------- 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~---------- 205 (871)
....+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++..... |-..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--FIRVVGSEFVQKYL 220 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--EEEEehHHHHHHhc
Confidence 34557788888877776553 1 235678899999999999999999876542 3210
Q ss_pred -chhhHHHHHHHHHHcCCcEEEEEecCCCcc------------Ch----hhhccccC--CCCCCcEEEEeecCcchhc-c
Q 038510 206 -HETVRAGRLLERLKKEKKILIILDDIWGGL------------DL----EAIGIPLA--DDNSGCKVLLTARSQDVLS-C 265 (871)
Q Consensus 206 -~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~~----~~l~~~l~--~~~~gs~iivTtr~~~va~-~ 265 (871)
.....+..+........+.+|++|++.... .. ..+...+. ....+..||+||...+... .
T Consensus 221 ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA 300 (398)
T PTZ00454 221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 300 (398)
T ss_pred chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH
Confidence 111223344444455678999999986420 01 11111111 1223556888887654331 1
Q ss_pred cc---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 266 KM---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 266 ~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.. .-...++++..+.++-..+|..........++. -..++++.+.|.-
T Consensus 301 llR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 301 LLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred HcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 11 234578899999999888888765432211111 1345666676664
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.70 E-value=0.0018 Score=64.57 Aligned_cols=96 Identities=18% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCccccccchHHHHHHHHH----hcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc----ccchhhHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDA----LSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----KSHETVRAGRLLERLK 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~~~~~~~~l~~~l~ 219 (871)
.....++|.+..++.+++- +......-+-+||..|+|||++++++.+....+. .. ..........+.+.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G-LRlIev~k~~L~~l~~l~~~l~ 102 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG-LRLIEVSKEDLGDLPELLDLLR 102 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-ceEEEECHHHhccHHHHHHHHh
Confidence 3445678888888777663 3344556778899999999999999998776542 21 2223344566666665
Q ss_pred -cCCcEEEEEecCCCc---cChhhhcccc
Q 038510 220 -KEKKILIILDDIWGG---LDLEAIGIPL 244 (871)
Q Consensus 220 -~~kr~LlvlDdv~~~---~~~~~l~~~l 244 (871)
...||+|++||+.-. .....++..+
T Consensus 103 ~~~~kFIlf~DDLsFe~~d~~yk~LKs~L 131 (249)
T PF05673_consen 103 DRPYKFILFCDDLSFEEGDTEYKALKSVL 131 (249)
T ss_pred cCCCCEEEEecCCCCCCCcHHHHHHHHHh
Confidence 357899999998533 3455555544
No 131
>PRK06620 hypothetical protein; Validated
Probab=97.70 E-value=0.00016 Score=72.61 Aligned_cols=133 Identities=15% Similarity=0.025 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcccccccchhhHHHHHHHHHHcCCcEEEEEecCCCccChhhhccccC-CCCCCc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHETVRAGRLLERLKKEKKILIILDDIWGGLDLEAIGIPLA-DDNSGC 251 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~-~~~~gs 251 (871)
+.+.|+|++|+|||+|++.+++.... .|...... . .+... ..-++++||+....+ ..+...+. -...|.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~~~~~--~---~~~~~--~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~ 114 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA--YIIKDIFF--N---EEILE--KYNAFIIEDIENWQE-PALLHIFNIINEKQK 114 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC--EEcchhhh--c---hhHHh--cCCEEEEeccccchH-HHHHHHHHHHHhcCC
Confidence 56899999999999999998876542 23221110 0 11122 335788899963221 11111110 013466
Q ss_pred EEEEeecCcchh------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh
Q 038510 252 KVLLTARSQDVL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI 316 (871)
Q Consensus 252 ~iivTtr~~~va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 316 (871)
.||+|++..... ..+....-+++++++++++-..++.+.+.... -.--+++.+-|++.+.|---
T Consensus 115 ~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~-l~l~~ev~~~L~~~~~~d~r 184 (214)
T PRK06620 115 YLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS-VTISRQIIDFLLVNLPREYS 184 (214)
T ss_pred EEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHH
Confidence 799988864321 11334456899999999998888887765321 11225677778888877643
No 132
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.70 E-value=0.0003 Score=77.56 Aligned_cols=131 Identities=26% Similarity=0.248 Sum_probs=86.7
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc---cccccc--chhhHHHHHH--HHHHcCCcEEEE
Q 038510 155 SRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN---NLFEKS--HETVRAGRLL--ERLKKEKKILII 227 (871)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~--~~~~~~~~l~--~~l~~~kr~Llv 227 (871)
.|.....++++.+..... ++.|.|+-++||||+++.+....... -.|++. ......+.+. ..+...++..|+
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yif 99 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIF 99 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEE
Confidence 344556666666554333 99999999999999997776655432 123311 1111122222 122222568999
Q ss_pred EecCCCccChhhhccccCCCCCCcEEEEeecCcchh-----ccccCCcceeeccCCCHHHHHHHH
Q 038510 228 LDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVL-----SCKMDCQQNFFVDVLNEKEAWSLF 287 (871)
Q Consensus 228 lDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va-----~~~~~~~~~~~l~~L~~~~~~~Lf 287 (871)
||.|.....|+.....+.+.++. +|++|+-+.... ....+....+++.||+..|...+-
T Consensus 100 LDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 100 LDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred EecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 99999999999888888777766 888888775443 223355678999999999987653
No 133
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00064 Score=79.00 Aligned_cols=172 Identities=14% Similarity=0.114 Sum_probs=106.6
Q ss_pred CccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc----------------------ccc--
Q 038510 149 DFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN----------------------LFE-- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------~F~-- 203 (871)
....++|.+..+..|..++..+.. +.+.++|+.|+||||+|+.+++..-... |.|
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 345678999999999998886654 6778999999999999999988754311 111
Q ss_pred ---c--cchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE-eecCcchhccccCCcc
Q 038510 204 ---K--SHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL-TARSQDVLSCKMDCQQ 271 (871)
Q Consensus 204 ---~--~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv-Ttr~~~va~~~~~~~~ 271 (871)
. ......+..+.+.+. .+++-++|+|++... ..++.+...+-.-.....+|+ |+....+.........
T Consensus 94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~ 173 (620)
T PRK14948 94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQ 173 (620)
T ss_pred EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhee
Confidence 0 011223333433332 145668999999755 345556555543333444444 4433333322233456
Q ss_pred eeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 272 NFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 272 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
.+++..++.++....+.+.+...... --.+....|++.++|.+..+...
T Consensus 174 ~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 174 RFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 78889999998888777766432111 11345788999999987554433
No 134
>CHL00181 cbbX CbbX; Provisional
Probab=97.66 E-value=0.00065 Score=71.40 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc-----ccccccchhhH--------HHHHHHHHHcCCcEEEEEecCCCc-----
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN-----NLFEKSHETVR--------AGRLLERLKKEKKILIILDDIWGG----- 234 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~~~~~--------~~~l~~~l~~~kr~LlvlDdv~~~----- 234 (871)
..+.++|++|+||||+|+.++...... .+|-..+.... .....+.+.+...-+|++|++...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~ 139 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN 139 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC
Confidence 357889999999999999998765321 12321111111 112223333223459999999642
Q ss_pred ------cChhhhccccCCCCCCcEEEEeecCcchh-------ccccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 235 ------LDLEAIGIPLADDNSGCKVLLTARSQDVL-------SCKMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 235 ------~~~~~l~~~l~~~~~gs~iivTtr~~~va-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
+..+.+...+.+...+.+||.++....+. .........+.+++++.+|..+++...+.
T Consensus 140 ~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 140 ERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred ccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 11122333333333455676766543321 01122345789999999999888887764
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.64 E-value=6.6e-05 Score=53.71 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=15.1
Q ss_pred CccEEEeeCCCccccchhhcCCCCCCEEeCCCC
Q 038510 566 KLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 566 ~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 598 (871)
+|++|++++|+|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344444444444444444445555555555444
No 136
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.63 E-value=0.00064 Score=75.21 Aligned_cols=186 Identities=17% Similarity=0.221 Sum_probs=106.2
Q ss_pred CccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc----------
Q 038510 149 DFMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS---------- 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~---------- 205 (871)
.+..+.|.+..++++.+++. . ...+-+.++|++|+|||++|+.+++.... .|-..
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~fi~V~~seL~~k~~ 258 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TFLRVVGSELIQKYL 258 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CEEEEecchhhhhhc
Confidence 34456788888888877663 1 23456789999999999999999997653 23310
Q ss_pred -chhhHHHHHHHHHHcCCcEEEEEecCCCcc------------Ch----hhhccccC--CCCCCcEEEEeecCcchhcc-
Q 038510 206 -HETVRAGRLLERLKKEKKILIILDDIWGGL------------DL----EAIGIPLA--DDNSGCKVLLTARSQDVLSC- 265 (871)
Q Consensus 206 -~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~~----~~l~~~l~--~~~~gs~iivTtr~~~va~~- 265 (871)
.....+..+.+....+.+.+|+||++.... .. ..+...+. ....+.+||+||...+....
T Consensus 259 Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpa 338 (438)
T PTZ00361 259 GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPA 338 (438)
T ss_pred chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHH
Confidence 111223334444444678899999985321 00 01111111 11235578888876543311
Q ss_pred cc---CCcceeeccCCCHHHHHHHHHHHhCCCCC--CchhHHHHHHHHHHcCCchh----HHHHHHHHHh---cC---Ch
Q 038510 266 KM---DCQQNFFVDVLNEKEAWSLFRKMTGDCIE--NGELKSVATEIVKECAGLPI----AIVPVARALI---NK---RL 330 (871)
Q Consensus 266 ~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~--~~~l~~~~~~I~~~c~GlPL----ai~~~~~~l~---~~---~~ 330 (871)
.. .-...++++..+.++-.++|..++..... ...+ ..++..+.|+-- ++..-|+.++ ++ +.
T Consensus 339 LlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl----~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~ 414 (438)
T PTZ00361 339 LIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDL----EEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQ 414 (438)
T ss_pred hccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCH----HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCH
Confidence 11 23467899999999999999987653221 1222 345556655532 2333333333 22 56
Q ss_pred hHHHHHHHHh
Q 038510 331 FEWKDSLLEL 340 (871)
Q Consensus 331 ~~w~~~~~~l 340 (871)
+++..++.+.
T Consensus 415 ~D~~~A~~~v 424 (438)
T PTZ00361 415 ADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 137
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.61 E-value=0.00024 Score=65.48 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=40.3
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhhccccc-----------ccchhhHHHHHHHHHHcCC-cEEEEEecCCCc
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KSHETVRAGRLLERLKKEK-KILIILDDIWGG 234 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~~~~~~~~~l~~~l~~~k-r~LlvlDdv~~~ 234 (871)
|.|+|++|+||||+|+.+++..... |- .......+..+.+...+.. +.+|++||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~--~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP--FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE--EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc--cccccccccccccccccccccccccccccccccceeeeeccchhc
Confidence 5789999999999999999997642 32 1112233444555554444 799999999654
No 138
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.59 E-value=0.00075 Score=71.01 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=67.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhhc-----ccccccchhhH--------HHHHHHHHHcCCcEEEEEecCCCc------
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKEN-----NLFEKSHETVR--------AGRLLERLKKEKKILIILDDIWGG------ 234 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~-----~~F~~~~~~~~--------~~~l~~~l~~~kr~LlvlDdv~~~------ 234 (871)
-+.++|++|+||||+|+.++...... .+|-..+.... ...+.+.+.+-..-+|+||++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~ 139 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNE 139 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCc
Confidence 57899999999999998887765432 12321110010 112223333334468999999632
Q ss_pred -----cChhhhccccCCCCCCcEEEEeecCcchhcc-------ccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 235 -----LDLEAIGIPLADDNSGCKVLLTARSQDVLSC-------KMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 235 -----~~~~~l~~~l~~~~~gs~iivTtr~~~va~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
+.++.+...+.....+-+||.++.....-.. .......+++++++.+|-.+++...+.
T Consensus 140 ~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 140 RDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred cchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 1123333333333445566666543322110 111245789999999999999887764
No 139
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=2.7e-05 Score=91.13 Aligned_cols=129 Identities=22% Similarity=0.240 Sum_probs=90.7
Q ss_pred CCceEEEecCCC--CCccCcccccCCCcceEEEecCCCCC--CCCCccccccCCcEEEecccCCCCCcccCCCCCccEEE
Q 038510 496 PQLKYFRIGNDP--SLRIPDNFFTGMTGLKVLDFTEMHLL--PLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILS 571 (871)
Q Consensus 496 ~~L~~L~l~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~ 571 (871)
.+|+.|++.|.. ....+..+...++.|+.|.++|..+. ++-.-..++++|++||+++|+++.+..+++|+||++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 577888887732 23344455667889999999887764 22233457889999999999999988899999999999
Q ss_pred eeCCCccccc--hhhcCCCCCCEEeCCCCCCCCccChh------hhhCCCCCcEEecccCCC
Q 038510 572 LRGSDVEKLV--GEMGQLTQLRLLDLSKCFELKVIPPN------VISSLSRLEELYIGESPI 625 (871)
Q Consensus 572 l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~------~i~~L~~L~~L~l~~~~~ 625 (871)
+++-.+..-+ ..+-+|++|++||++...... .+.- .-..|++|+.|+.+++.+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcch
Confidence 8877666433 457789999999998743222 2211 013478888888776654
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.57 E-value=0.00063 Score=82.93 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=85.4
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc--------cccc---------c----chh
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN--------LFEK---------S----HET 208 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~---------~----~~~ 208 (871)
..+++||++++.+++..|......-+.++|.+|+|||++|..+........ ++-. . ...
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e 251 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFE 251 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHH
Confidence 356899999999999998866666677899999999999999988763321 1110 0 011
Q ss_pred hHHHHHHHHHHc-CCcEEEEEecCCCcc---------ChhhhccccCCCCCCcEEEE-eecCcc---hh--ccccCCcce
Q 038510 209 VRAGRLLERLKK-EKKILIILDDIWGGL---------DLEAIGIPLADDNSGCKVLL-TARSQD---VL--SCKMDCQQN 272 (871)
Q Consensus 209 ~~~~~l~~~l~~-~kr~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iiv-Ttr~~~---va--~~~~~~~~~ 272 (871)
..+..+...+.+ +++.+|++|++.... +...+..+....+. -++|- ||..+. +. ......-.+
T Consensus 252 ~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~-i~~IgaTt~~e~r~~~~~d~al~rRf~~ 330 (852)
T TIGR03346 252 ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE-LHCIGATTLDEYRKYIEKDAALERRFQP 330 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-eEEEEeCcHHHHHHHhhcCHHHHhcCCE
Confidence 133444444432 468999999996431 11122222222222 23444 554422 11 111222356
Q ss_pred eeccCCCHHHHHHHHHHHh
Q 038510 273 FFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~ 291 (871)
+.++..+.++..+++....
T Consensus 331 i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 331 VFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 8899999999999987664
No 141
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.57 E-value=0.00044 Score=83.85 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=84.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc--------ccc---c------c----chh
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN--------LFE---K------S----HET 208 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~---~------~----~~~ 208 (871)
..+++||+.++.+++..|......-+.++|.+|+|||++|+.+........ ++- . . ...
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e 256 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 256 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhH
Confidence 356899999999999999876666777999999999999999998763211 111 0 0 011
Q ss_pred hHHHHHHHHHH-cCCcEEEEEecCCCcc---------ChhhhccccCCCCCCcEEEE-eecCcc---hh--ccccCCcce
Q 038510 209 VRAGRLLERLK-KEKKILIILDDIWGGL---------DLEAIGIPLADDNSGCKVLL-TARSQD---VL--SCKMDCQQN 272 (871)
Q Consensus 209 ~~~~~l~~~l~-~~kr~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iiv-Ttr~~~---va--~~~~~~~~~ 272 (871)
..+..+.+.+. .+++.+|++|++.... +...+..+....+ .-++|- ||+++. +. ......-..
T Consensus 257 ~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~ 335 (857)
T PRK10865 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQK 335 (857)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhCCE
Confidence 23344444443 2467999999986542 1122322322222 234554 444431 11 111122235
Q ss_pred eeccCCCHHHHHHHHHHHh
Q 038510 273 FFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~ 291 (871)
+.+..-+.++...+++...
T Consensus 336 i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 336 VFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEeCCCCHHHHHHHHHHHh
Confidence 6677778899998887654
No 142
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.55 E-value=0.001 Score=76.20 Aligned_cols=163 Identities=20% Similarity=0.242 Sum_probs=92.9
Q ss_pred CccccccchHHHHHHHHHh---cC---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccc----------
Q 038510 149 DFMHFESRKSTFKEILDAL---SN---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSH---------- 206 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---------- 206 (871)
....+.|.++.++++.+++ .. ...+-+.++|++|+|||++|+.+++..... |-..+
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~--~~~i~~~~~~~~~~g 130 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--FFSISGSDFVEMFVG 130 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC--eeeccHHHHHHHHhc
Confidence 3455777777665554433 21 123458899999999999999999876542 32111
Q ss_pred -hhhHHHHHHHHHHcCCcEEEEEecCCCcc------------Chhh----hccccC--CCCCCcEEEEeecCcchhc-cc
Q 038510 207 -ETVRAGRLLERLKKEKKILIILDDIWGGL------------DLEA----IGIPLA--DDNSGCKVLLTARSQDVLS-CK 266 (871)
Q Consensus 207 -~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~~~~----l~~~l~--~~~~gs~iivTtr~~~va~-~~ 266 (871)
.......+.+......+.+|++||++... .+.. +...+. ....+-.||.||....... ..
T Consensus 131 ~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al 210 (495)
T TIGR01241 131 VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPAL 210 (495)
T ss_pred ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHH
Confidence 11233444444444567999999995431 1111 111111 1223445666665543211 01
Q ss_pred ---cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 267 ---MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 267 ---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
..-+..+.++..+.++-.++|..+.......++ .....|++.+.|.-
T Consensus 211 ~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 211 LRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred hcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 123467889999999989999887754322211 12447888887753
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.53 E-value=0.0003 Score=71.00 Aligned_cols=145 Identities=15% Similarity=0.158 Sum_probs=83.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhcc-c-----cccc---------chhhHHHHHHHHHHcCCcEEEEEecCCCccC
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN-L-----FEKS---------HETVRAGRLLERLKKEKKILIILDDIWGGLD 236 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~-----F~~~---------~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~ 236 (871)
...+.|+|..|+|||.|.+++++...... . +... ........+.+.+. .-=+|++||++....
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 45688999999999999999999865421 1 1100 01122334445554 345899999976532
Q ss_pred ---hhhh-ccccC-CCCCCcEEEEeecCcchh--------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHH
Q 038510 237 ---LEAI-GIPLA-DDNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSV 303 (871)
Q Consensus 237 ---~~~l-~~~l~-~~~~gs~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~ 303 (871)
|+.. ...+. ....|-+||+|++...-. ..+...+-+++++++++++-.+++.+.+....-. --+++
T Consensus 112 ~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~-l~~~v 190 (219)
T PF00308_consen 112 KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE-LPEEV 190 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT---S-HHH
T ss_pred chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC-CcHHH
Confidence 3321 11111 113466899999664221 1234556689999999999999999887532211 22456
Q ss_pred HHHHHHHcCCchhHHH
Q 038510 304 ATEIVKECAGLPIAIV 319 (871)
Q Consensus 304 ~~~I~~~c~GlPLai~ 319 (871)
.+-|++.+.+..-.+.
T Consensus 191 ~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 191 IEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHTTSSHHHHH
T ss_pred HHHHHHhhcCCHHHHH
Confidence 7777777766554433
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.52 E-value=0.0012 Score=74.27 Aligned_cols=144 Identities=16% Similarity=0.269 Sum_probs=85.4
Q ss_pred ccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhc--------cccccc---
Q 038510 150 FMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFEKS--- 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~~~--- 205 (871)
...+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++..... ..|-..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 4456788888888877653 1 134568899999999999999999986432 122100
Q ss_pred --------chhhHHHHHHHHH----HcCCcEEEEEecCCCcc---------Ch-----hhhccccCC--CCCCcEEEEee
Q 038510 206 --------HETVRAGRLLERL----KKEKKILIILDDIWGGL---------DL-----EAIGIPLAD--DNSGCKVLLTA 257 (871)
Q Consensus 206 --------~~~~~~~~l~~~l----~~~kr~LlvlDdv~~~~---------~~-----~~l~~~l~~--~~~gs~iivTt 257 (871)
.....+..+.+.. ..+++++|+||+++... +. ..+...+.. ...+..||.||
T Consensus 261 eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~AT 340 (512)
T TIGR03689 261 ELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGAS 340 (512)
T ss_pred hhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEecc
Confidence 0111222232322 23478999999997431 11 122222211 11234455566
Q ss_pred cCcchhc-ccc---CCcceeeccCCCHHHHHHHHHHHhCC
Q 038510 258 RSQDVLS-CKM---DCQQNFFVDVLNEKEAWSLFRKMTGD 293 (871)
Q Consensus 258 r~~~va~-~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~ 293 (871)
...+... ... .-+..++++..+.++..++|..+...
T Consensus 341 N~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 341 NREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 5543321 111 23456999999999999999988753
No 145
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0039 Score=64.76 Aligned_cols=188 Identities=17% Similarity=0.248 Sum_probs=116.5
Q ss_pred cCCccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccch------
Q 038510 147 TQDFMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHE------ 207 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~------ 207 (871)
...+..+-|-++.+++|.+.+. + +..+=|.++|++|.|||-||++|++..... |-....
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--FIrvvgSElVqK 224 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--FIRVVGSELVQK 224 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--EEEeccHHHHHH
Confidence 3445567788888988888765 1 245678899999999999999999987653 652222
Q ss_pred -----hhHHHHHHHHHHcCCcEEEEEecCCCc------------cChh----hhccccC--CCCCCcEEEEeecCcchhc
Q 038510 208 -----TVRAGRLLERLKKEKKILIILDDIWGG------------LDLE----AIGIPLA--DDNSGCKVLLTARSQDVLS 264 (871)
Q Consensus 208 -----~~~~~~l~~~l~~~kr~LlvlDdv~~~------------~~~~----~l~~~l~--~~~~gs~iivTtr~~~va~ 264 (871)
...+..+.+..+++.+..|++|.++.. .+.+ ++...+. +....-|||..|.-.++..
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC
Confidence 223445555556678999999998643 0111 1222221 1233458888887766541
Q ss_pred -c---ccCCcceeeccCCCHHHHHHHHHHHhCC--CCCCchhHHHHHHHHHHcCCch----hHHHHHHHHHh---cC---
Q 038510 265 -C---KMDCQQNFFVDVLNEKEAWSLFRKMTGD--CIENGELKSVATEIVKECAGLP----IAIVPVARALI---NK--- 328 (871)
Q Consensus 265 -~---~~~~~~~~~l~~L~~~~~~~Lf~~~~~~--~~~~~~l~~~~~~I~~~c~GlP----Lai~~~~~~l~---~~--- 328 (871)
. .-.-+..++++.-+.+.=.++|+-++.. -...-++ +.|++.|.|.- -|+-+=|++++ .+
T Consensus 305 PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~V 380 (406)
T COG1222 305 PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKAICTEAGMFAIRERRDEV 380 (406)
T ss_pred hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHHHHHHHhHHHHHhccCee
Confidence 1 1223567888866666666777766652 2223333 34677777665 45555667765 22
Q ss_pred ChhHHHHHHHHh
Q 038510 329 RLFEWKDSLLEL 340 (871)
Q Consensus 329 ~~~~w~~~~~~l 340 (871)
+.+++..+.++.
T Consensus 381 t~~DF~~Av~KV 392 (406)
T COG1222 381 TMEDFLKAVEKV 392 (406)
T ss_pred cHHHHHHHHHHH
Confidence 566777666664
No 146
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=4.4e-05 Score=76.27 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=37.0
Q ss_pred hhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccccccccc
Q 038510 716 MQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKI 791 (871)
Q Consensus 716 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l 791 (871)
..++|+..+.+..|..- +....-....+|.+-.|+|... ++..+ ........||+|..|.+.+.|-+..+
T Consensus 196 r~Fpnv~sv~v~e~PlK-~~s~ek~se~~p~~~~LnL~~~-~idsw----asvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLK-TESSEKGSEPFPSLSCLNLGAN-NIDSW----ASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hhcccchheeeecCccc-chhhcccCCCCCcchhhhhccc-ccccH----HHHHHHcCCchhheeeccCCcccccc
Confidence 34566666666554321 1111112245666666666653 33222 33345566777777777776655544
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.47 E-value=3.3e-06 Score=93.59 Aligned_cols=124 Identities=20% Similarity=0.185 Sum_probs=75.8
Q ss_pred cccccceeecccCCcCcCCCCC-CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEEE
Q 038510 472 KLKVCTAISLIYSNISELPQGF-ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTLC 549 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L~ 549 (871)
.+..+...+.++|.+..+.... -++.|+.|++++|...++. .+..+.+|+.|||++|.+..+|.- ...+ +|+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeee
Confidence 3456677777777765554433 3566677777766655554 356667777777777776666642 1222 367777
Q ss_pred ecccCCCCCcccCCCCCccEEEeeCCCccccc--hhhcCCCCCCEEeCCCC
Q 038510 550 LNYCNLGDIAIIGDLKKLEILSLRGSDVEKLV--GEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 550 L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~ 598 (871)
|++|.++.+..|.+|.+|+.||+++|-+...- .-++.|..|+.|.+.+|
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77776666666667777777777666444222 22566666666666665
No 148
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0022 Score=68.71 Aligned_cols=145 Identities=12% Similarity=0.114 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc-----cc-----chhhHHHHHHHHHH--
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE-----KS-----HETVRAGRLLERLK-- 219 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~-----~~-----~~~~~~~~l~~~l~-- 219 (871)
...+.++|+.|+||||+|+.++...--.. |=| .. ...+.+..+.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 45678999999999999999987653211 111 11 11233444444442
Q ss_pred --cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeeccCCCHHHHHHHHHHHhCCC
Q 038510 220 --KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDC 294 (871)
Q Consensus 220 --~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 294 (871)
.+++-++|+|++..- +..+.+...+-.-..++.+|+||.+. .+.......+..+.+.+++.+++.+.+......
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~- 180 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE- 180 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-
Confidence 234556678999764 44555555554333566677777664 343323344677999999999999888765421
Q ss_pred CCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 295 IENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 295 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
. ..+.+..++..++|.|+.+..+
T Consensus 181 ~----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 S----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred C----ChHHHHHHHHHcCCCHHHHHHH
Confidence 1 1234567889999999765543
No 149
>CHL00176 ftsH cell division protein; Validated
Probab=97.44 E-value=0.0014 Score=76.33 Aligned_cols=160 Identities=16% Similarity=0.210 Sum_probs=93.1
Q ss_pred cccccchHHHHHH---HHHhcCC---------CceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------ch
Q 038510 151 MHFESRKSTFKEI---LDALSNR---------DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS-----------HE 207 (871)
Q Consensus 151 ~~~~gr~~~~~~l---~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-----------~~ 207 (871)
.++.|.++.++++ ++++... ..+-+.++|++|+|||++|+.+++..... |-.. ..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p--~i~is~s~f~~~~~g~~ 260 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP--FFSISGSEFVEMFVGVG 260 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eeeccHHHHHHHhhhhh
Confidence 4456666555544 4444422 23468999999999999999999876542 2210 01
Q ss_pred hhHHHHHHHHHHcCCcEEEEEecCCCcc------------C----hhhhccccC--CCCCCcEEEEeecCcchhc-ccc-
Q 038510 208 TVRAGRLLERLKKEKKILIILDDIWGGL------------D----LEAIGIPLA--DDNSGCKVLLTARSQDVLS-CKM- 267 (871)
Q Consensus 208 ~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~va~-~~~- 267 (871)
......+.+......+++|++||++... . +..+...+. ....+-.||.||...+... ...
T Consensus 261 ~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlR 340 (638)
T CHL00176 261 AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLR 340 (638)
T ss_pred HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhc
Confidence 1223344445555678999999995431 1 112221111 1234555666776643321 111
Q ss_pred --CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc
Q 038510 268 --DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL 314 (871)
Q Consensus 268 --~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 314 (871)
.-+..+.++..+.++-.++++.++......+ ......+++.+.|.
T Consensus 341 pGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 341 PGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPGF 387 (638)
T ss_pred cccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCCC
Confidence 2346788888999999999988876422211 23356788888774
No 150
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.44 E-value=0.00026 Score=67.19 Aligned_cols=63 Identities=27% Similarity=0.390 Sum_probs=25.8
Q ss_pred ccCCCcceEEEecCCCCCCCCCcccc-ccCCcEEEecccCCCC---CcccCCCCCccEEEeeCCCcc
Q 038510 516 FTGMTGLKVLDFTEMHLLPLPSSLGL-LQNLQTLCLNYCNLGD---IAIIGDLKKLEILSLRGSDVE 578 (871)
Q Consensus 516 ~~~l~~Lr~L~l~~~~i~~lp~~i~~-l~~Lr~L~L~~~~i~~---~~~i~~l~~L~~L~l~~~~i~ 578 (871)
|..++.|..|.+++|.|+.+-..+.. +++|..|.|.+|+|.+ +..+..|+.|++|.+-+|.++
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 33444444444444444433333322 2334444444444322 233333444444444444433
No 151
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00038 Score=82.38 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=85.5
Q ss_pred cccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc--------c-ccc--------c----chhh
Q 038510 151 MHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN--------L-FEK--------S----HETV 209 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~-F~~--------~----~~~~ 209 (871)
..++||++++.+++..|......-+.++|.+|+|||++|+.++....... . |.. . ....
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~ 265 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEK 265 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHH
Confidence 46889999999999988865445567899999999999999997653221 1 110 0 1112
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCc----------cChhhhccccCCCCCCcEEEEeecCcchh------ccccCCccee
Q 038510 210 RAGRLLERLKKEKKILIILDDIWGG----------LDLEAIGIPLADDNSGCKVLLTARSQDVL------SCKMDCQQNF 273 (871)
Q Consensus 210 ~~~~l~~~l~~~kr~LlvlDdv~~~----------~~~~~l~~~l~~~~~gs~iivTtr~~~va------~~~~~~~~~~ 273 (871)
....+...+.+.++.+|++|++... .+...+..++...+ .-+||-+|...+.. .....--..+
T Consensus 266 rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I 344 (758)
T PRK11034 266 RFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKI 344 (758)
T ss_pred HHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEE
Confidence 2344555555456789999999643 11112222322222 23445444433321 0011223579
Q ss_pred eccCCCHHHHHHHHHHHh
Q 038510 274 FVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 274 ~l~~L~~~~~~~Lf~~~~ 291 (871)
.++..+.++..+++....
T Consensus 345 ~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 345 DITEPSIEETVQIINGLK 362 (758)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998664
No 152
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00033 Score=75.57 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=37.1
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCC-CCCCCCccccccCCcEEEeccc-CCCCCcccCCCCCccEEE
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMH-LLPLPSSLGLLQNLQTLCLNYC-NLGDIAIIGDLKKLEILS 571 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~lp~~i~~l~~Lr~L~L~~~-~i~~~~~i~~l~~L~~L~ 571 (871)
.|.+++.|.+.++....+|. + ..+|+.|.+++|. ++.+|..+. .+|++|++++| .+..++ .+|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-----~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-----ESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-----cccceEE
Confidence 34566666666665555552 1 2356666666533 345554442 46666666666 343321 2355555
Q ss_pred eeCC
Q 038510 572 LRGS 575 (871)
Q Consensus 572 l~~~ 575 (871)
+..+
T Consensus 119 L~~n 122 (426)
T PRK15386 119 IKGS 122 (426)
T ss_pred eCCC
Confidence 5544
No 153
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.41 E-value=0.0012 Score=63.85 Aligned_cols=85 Identities=15% Similarity=0.223 Sum_probs=55.6
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc----ccc-ccchhhHHHHHHHHH----H-
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN----LFE-KSHETVRAGRLLERL----K- 219 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~-~~~~~~~~~~l~~~l----~- 219 (871)
..+++|.++.++++--...+++.+-+.|.||+|+||||=+..+++..-... -.. ..+++..++.+++.+ +
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~ 105 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQK 105 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHh
Confidence 456889999999888877789999999999999999997766665443211 111 112222222222222 1
Q ss_pred -----cCCcEEEEEecCCCc
Q 038510 220 -----KEKKILIILDDIWGG 234 (871)
Q Consensus 220 -----~~kr~LlvlDdv~~~ 234 (871)
.++--.+|||..++-
T Consensus 106 kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 106 KVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred hccCCCCceeEEEeeccchh
Confidence 245568899998765
No 154
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.0014 Score=66.08 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=38.9
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.+...+.+|......++.++.+. .++.+.|..|+|||+||.++..+.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34455778888899999988764 499999999999999999988753
No 155
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.40 E-value=8.5e-06 Score=71.94 Aligned_cols=107 Identities=15% Similarity=0.252 Sum_probs=79.9
Q ss_pred ceeecccCCcCcCCCC----CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecc
Q 038510 477 TAISLIYSNISELPQG----FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNY 552 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~ 552 (871)
..+++++|.+..+++. .....|....+++|...++|+.+-..++.+..|++++|.++++|..+..++.||.|+++.
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 3445555555433332 245567777888888888888877778888899999999988888888888888888888
Q ss_pred cCCCC-CcccCCCCCccEEEeeCCCccccchh
Q 038510 553 CNLGD-IAIIGDLKKLEILSLRGSDVEKLVGE 583 (871)
Q Consensus 553 ~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~ 583 (871)
|.+.. |.-+..|.+|-+||..++.+..+|-.
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 88755 66677788888888888877777755
No 156
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.39 E-value=0.00018 Score=70.96 Aligned_cols=48 Identities=23% Similarity=0.348 Sum_probs=34.2
Q ss_pred ccccchHHHHHHHHHhc---CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 152 HFESRKSTFKEILDALS---NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
.|+||+++++++...+. ....+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999983 4557899999999999999999999887764
No 157
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0017 Score=72.90 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=57.5
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-------ccchh---------h
Q 038510 152 HFESRKSTFKEILDALS------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-------KSHET---------V 209 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------~~~~~---------~ 209 (871)
+-+|.++.+++|++++. +-+.++++.+|++|+|||++|+.|+.....+ .|. +..+. .
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-FfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-FFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-eEEEeccccccHHhhcccceeeecc
Confidence 34689999999999886 3456899999999999999999999877654 222 00110 0
Q ss_pred HHHHHHHHHHc--CCcEEEEEecCCCc
Q 038510 210 RAGRLLERLKK--EKKILIILDDIWGG 234 (871)
Q Consensus 210 ~~~~l~~~l~~--~kr~LlvlDdv~~~ 234 (871)
...++.+.|++ ...-|+.||.|+..
T Consensus 491 MPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 491 MPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred CChHHHHHHHhhCCCCceEEeehhhhh
Confidence 12355566643 35678999998643
No 158
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0042 Score=66.15 Aligned_cols=167 Identities=12% Similarity=0.125 Sum_probs=106.6
Q ss_pred cccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc--------------cccc----cc-----c
Q 038510 151 MHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN--------------NLFE----KS-----H 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~~F~----~~-----~ 206 (871)
..++|.+..++.+...+..+++ +..-++|+.|+||+++|..+.+..-.. .|=| .. .
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4578999999999999987765 788999999999999999887764221 1101 00 0
Q ss_pred ---------------------hhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC
Q 038510 207 ---------------------ETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS 259 (871)
Q Consensus 207 ---------------------~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~ 259 (871)
..+.+..+.+.+. .+++-++|+|++... ...+.+...+-.-....-|++|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~ 163 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSP 163 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence 0112344555443 256779999998654 3344454444222233334444444
Q ss_pred cchhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 260 QDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 260 ~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
..+.......+..+.+.++++++..+.+.+........ .....++..++|.|..+...
T Consensus 164 ~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~----~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 164 ESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN----INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred HhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch----hHHHHHHHHcCCCHHHHHHH
Confidence 44443334556789999999999999998874322111 11357899999999765543
No 159
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0028 Score=73.11 Aligned_cols=167 Identities=18% Similarity=0.167 Sum_probs=106.6
Q ss_pred ccccccchHH---HHHHHHHhcCC---------CceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cc
Q 038510 150 FMHFESRKST---FKEILDALSNR---------DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SH 206 (871)
Q Consensus 150 ~~~~~gr~~~---~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~ 206 (871)
+.++.|-++. +++++++|.++ -.+=+-++|++|+|||-||++++-.+.+- |-. ..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP--F~svSGSEFvE~~~g~ 387 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSVSGSEFVEMFVGV 387 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc--eeeechHHHHHHhccc
Confidence 3445666655 45566666632 24568899999999999999999988875 431 11
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCcc-----------------ChhhhccccCCCCCCc--EEEEeecCcchhcc--
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGL-----------------DLEAIGIPLADDNSGC--KVLLTARSQDVLSC-- 265 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~-----------------~~~~l~~~l~~~~~gs--~iivTtr~~~va~~-- 265 (871)
...++..+....+...+..+.+|+++... .++++..-+.....++ -++-+|+..++.+.
T Consensus 388 ~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~al 467 (774)
T KOG0731|consen 388 GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPAL 467 (774)
T ss_pred chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHh
Confidence 23455666666666788999999985431 1233322222222222 24446666665421
Q ss_pred --ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 266 --KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 266 --~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
.-.-+..+.++.-+...-.++|..++.......+..++.+ |+....|.+=|..
T Consensus 468 lrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 468 LRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred cCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHHH
Confidence 1123467888888888999999999875554455566677 9999988885543
No 160
>PTZ00202 tuzin; Provisional
Probab=97.25 E-value=0.0014 Score=70.26 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=42.4
Q ss_pred cCCccccccchHHHHHHHHHhcC---CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 147 TQDFMHFESRKSTFKEILDALSN---RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.+...|+||+++..++...|.+ ...+++.|.|++|+|||||++.+.....
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 55667899999999999998863 2345889999999999999999986654
No 161
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.23 E-value=0.0025 Score=71.50 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc-----cccccch--h----------hHHHHHHHHHHcCCcEEEEEecCCCcc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN-----LFEKSHE--T----------VRAGRLLERLKKEKKILIILDDIWGGL 235 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~~--~----------~~~~~l~~~l~~~kr~LlvlDdv~~~~ 235 (871)
.-+.|+|..|+|||+|++++.+...... .|-.... . .......+.+. +.-+||+||+....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecccccc
Confidence 4588999999999999999998654311 1110000 0 11122222222 33489999996542
Q ss_pred ---Chh-hhccccCC-CCCCcEEEEeecCcc--hh------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCC-CchhH
Q 038510 236 ---DLE-AIGIPLAD-DNSGCKVLLTARSQD--VL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIE-NGELK 301 (871)
Q Consensus 236 ---~~~-~l~~~l~~-~~~gs~iivTtr~~~--va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~l~ 301 (871)
.+. .+...+.. ...|..||+|+.... .. ..+...+-++.+++++.++-.+++.+.+..... ..--+
T Consensus 220 ~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~ 299 (450)
T PRK14087 220 YKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTE 299 (450)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCH
Confidence 222 22222211 123446888866531 11 113445567889999999999999988753221 12336
Q ss_pred HHHHHHHHHcCCchhHHHHHH
Q 038510 302 SVATEIVKECAGLPIAIVPVA 322 (871)
Q Consensus 302 ~~~~~I~~~c~GlPLai~~~~ 322 (871)
++..-|++.++|.|-.+.-+.
T Consensus 300 evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 300 EAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHccCCCHHHHHHHH
Confidence 788999999999997665554
No 162
>PF14516 AAA_35: AAA-like domain
Probab=97.23 E-value=0.0087 Score=64.59 Aligned_cols=172 Identities=13% Similarity=0.141 Sum_probs=103.9
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--------------------------
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-------------------------- 203 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------------- 203 (871)
..-++.|...-+++.+.+.++ ...+.|.|+-.+|||+|...+.+..+.++ +.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~~-~~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQG-YRCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHCC-CEEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 344668886777777777654 46899999999999999999988776532 11
Q ss_pred --------cc-----------chhhHHHHHHHHHH--cCCcEEEEEecCCCccC---h-hhhccccC----C----CCCC
Q 038510 204 --------KS-----------HETVRAGRLLERLK--KEKKILIILDDIWGGLD---L-EAIGIPLA----D----DNSG 250 (871)
Q Consensus 204 --------~~-----------~~~~~~~~l~~~l~--~~kr~LlvlDdv~~~~~---~-~~l~~~l~----~----~~~g 250 (871)
.. ........+.+.+. .+++.+|++|+|+..-. + +++...+. . ....
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 00 00001111222221 25899999999975522 1 11111110 0 0111
Q ss_pred cEEEEeecCcc--hh----ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHH
Q 038510 251 CKVLLTARSQD--VL----SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARA 324 (871)
Q Consensus 251 s~iivTtr~~~--va----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 324 (871)
+-.+|...+.+ .. .........+++++++.+|...|..++-.... ....++|...+||+|.-+..++..
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~~~~ 242 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKACYL 242 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11222222211 11 11234456899999999999999887643211 223888999999999999999999
Q ss_pred HhcC
Q 038510 325 LINK 328 (871)
Q Consensus 325 l~~~ 328 (871)
+...
T Consensus 243 l~~~ 246 (331)
T PF14516_consen 243 LVEE 246 (331)
T ss_pred HHHc
Confidence 9754
No 163
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.23 E-value=0.0035 Score=72.50 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=94.0
Q ss_pred cCCccccccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHhHHHHHHHHHHhhc--cccc-------c--------
Q 038510 147 TQDFMHFESRKSTFKEILDALSN-----RDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--NLFE-------K-------- 204 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~-------~-------- 204 (871)
|.....++|.++.++++..|+.. ...+++.|+|+.|+||||+++.++...... ..+. .
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s 159 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLS 159 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchh
Confidence 34456688999999999998873 234579999999999999999998765432 1000 0
Q ss_pred --------cchhhHHHHHHHHHH----------cCCcEEEEEecCCCcc-----Chhhhcc-ccCCCCCCcEEEEeecCc
Q 038510 205 --------SHETVRAGRLLERLK----------KEKKILIILDDIWGGL-----DLEAIGI-PLADDNSGCKVLLTARSQ 260 (871)
Q Consensus 205 --------~~~~~~~~~l~~~l~----------~~kr~LlvlDdv~~~~-----~~~~l~~-~l~~~~~gs~iivTtr~~ 260 (871)
.+.......+..... .+++.+|+||++.+.. .+..+.. .+...+.-.-|+|||-+.
T Consensus 160 ~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~ 239 (637)
T TIGR00602 160 LESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESL 239 (637)
T ss_pred hhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCc
Confidence 001111122222221 2367799999995431 2333333 222222222355566321
Q ss_pred c---------hh------ccc--cCCcceeeccCCCHHHHHHHHHHHhCCCCC---Cc---hhHHHHHHHHHHcCCchh
Q 038510 261 D---------VL------SCK--MDCQQNFFVDVLNEKEAWSLFRKMTGDCIE---NG---ELKSVATEIVKECAGLPI 316 (871)
Q Consensus 261 ~---------va------~~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~---~~---~l~~~~~~I~~~c~GlPL 316 (871)
. .. ... ......+...+++..+..+.+...+..... .. .-.+....|+..++|-=-
T Consensus 240 ~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 240 EGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred cccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 1 00 001 112346899999999977777666542110 10 113556677777777543
No 164
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.23 E-value=9.4e-05 Score=75.92 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=39.1
Q ss_pred CCcceEEEecCCCCCCCC-----CccccccCCcEEEecccCCCC--C----cccCCCCCccEEEeeCCCccc-----cch
Q 038510 519 MTGLKVLDFTEMHLLPLP-----SSLGLLQNLQTLCLNYCNLGD--I----AIIGDLKKLEILSLRGSDVEK-----LVG 582 (871)
Q Consensus 519 l~~Lr~L~l~~~~i~~lp-----~~i~~l~~Lr~L~L~~~~i~~--~----~~i~~l~~L~~L~l~~~~i~~-----lp~ 582 (871)
-+.|||+....|.+..-+ ..+...+.|+.+.+..|.|.. . ..+..+++|++|||++|.++. +-.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 345555555555544322 123344555555555555432 1 334555566666666554441 122
Q ss_pred hhcCCCCCCEEeCCCC
Q 038510 583 EMGQLTQLRLLDLSKC 598 (871)
Q Consensus 583 ~i~~L~~L~~L~l~~~ 598 (871)
.+..+++|+.|++++|
T Consensus 236 aL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDC 251 (382)
T ss_pred Hhcccchheeeccccc
Confidence 2344455555555555
No 165
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.22 E-value=0.005 Score=68.87 Aligned_cols=165 Identities=18% Similarity=0.185 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc---c--ccccch--h--------hHHHHHHHHHHcCCcEEEEEecCCCccC-
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN---L--FEKSHE--T--------VRAGRLLERLKKEKKILIILDDIWGGLD- 236 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~--F~~~~~--~--------~~~~~l~~~l~~~kr~LlvlDdv~~~~~- 236 (871)
..+.|+|..|+|||+|++++++....+. . |-.... . .......+.+. +.-+|||||+.....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 4688999999999999999999875431 1 111000 0 01122333333 234889999975421
Q ss_pred --hh-hhccccCC-CCCCcEEEEeecCcc--hh------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHH
Q 038510 237 --LE-AIGIPLAD-DNSGCKVLLTARSQD--VL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVA 304 (871)
Q Consensus 237 --~~-~l~~~l~~-~~~gs~iivTtr~~~--va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~ 304 (871)
++ .+...+.. ...|..||+|+.... +. ......+..+.+++.+.++-..++.+.+..... .--+++.
T Consensus 215 ~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~-~l~~e~l 293 (405)
T TIGR00362 215 ERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL-ELPDEVL 293 (405)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHH
Confidence 22 22222211 123455788776421 11 112333457999999999999999988864321 1125678
Q ss_pred HHHHHHcCCchhH----HHHHHHHHh--cC--ChhHHHHHHHHh
Q 038510 305 TEIVKECAGLPIA----IVPVARALI--NK--RLFEWKDSLLEL 340 (871)
Q Consensus 305 ~~I~~~c~GlPLa----i~~~~~~l~--~~--~~~~w~~~~~~l 340 (871)
..|++.+.|..-. +..+..+-. ++ +.+..+.++...
T Consensus 294 ~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 294 EFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 8899998887653 333322221 22 566777777654
No 166
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.21 E-value=0.0027 Score=71.43 Aligned_cols=166 Identities=15% Similarity=0.110 Sum_probs=90.9
Q ss_pred ccccccchHHHHHHHHHh---c-------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-------cccc--cchhhH
Q 038510 150 FMHFESRKSTFKEILDAL---S-------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-------LFEK--SHETVR 210 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l---~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------~F~~--~~~~~~ 210 (871)
...+.|.+..++.+.... . -...+-|.++|++|+|||.+|+.+++.....- .|.. ......
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~ 306 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESR 306 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHH
Confidence 345667666555544321 1 02345688999999999999999999765420 0111 112233
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCcc----C------hhh----hccccCCCCCCcEEEEeecCcchhc-cc---cCCcce
Q 038510 211 AGRLLERLKKEKKILIILDDIWGGL----D------LEA----IGIPLADDNSGCKVLLTARSQDVLS-CK---MDCQQN 272 (871)
Q Consensus 211 ~~~l~~~l~~~kr~LlvlDdv~~~~----~------~~~----l~~~l~~~~~gs~iivTtr~~~va~-~~---~~~~~~ 272 (871)
+..+.+......+++|++|+++... . -.. +...+.....+--||.||....-.. .. ..-+..
T Consensus 307 l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 307 MRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEI 386 (489)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeE
Confidence 4445554555688999999996421 0 001 1111111222334556776543221 11 133567
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
+.++.-+.++-.++|..+.........-..-...+++.+.|.-
T Consensus 387 i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 387 FFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred EEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 8888889999999998877532211000112345666666654
No 167
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.21 E-value=0.00043 Score=65.75 Aligned_cols=101 Identities=22% Similarity=0.204 Sum_probs=84.0
Q ss_pred ccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC--CccccccCCcEEEecc
Q 038510 475 VCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP--SSLGLLQNLQTLCLNY 552 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp--~~i~~l~~Lr~L~L~~ 552 (871)
....+++++|.+..++....++.|.+|.+.+|.+..+.+.+-.-+++|.+|.|.+|++.++- +.+..++.|+||.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 45567888899888888889999999999999999998887777889999999999998553 4577889999999999
Q ss_pred cCCCCC-----cccCCCCCccEEEeeCC
Q 038510 553 CNLGDI-----AIIGDLKKLEILSLRGS 575 (871)
Q Consensus 553 ~~i~~~-----~~i~~l~~L~~L~l~~~ 575 (871)
|.++.- --+.++++|++||+.+-
T Consensus 123 Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 123 NPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CchhcccCceeEEEEecCcceEeehhhh
Confidence 987652 34778888888887654
No 168
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.20 E-value=0.0027 Score=62.63 Aligned_cols=161 Identities=16% Similarity=0.229 Sum_probs=100.0
Q ss_pred cccccchHHHHH---HHHHhcCC------CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------ccchhhH
Q 038510 151 MHFESRKSTFKE---ILDALSNR------DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KSHETVR 210 (871)
Q Consensus 151 ~~~~gr~~~~~~---l~~~l~~~------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~~~~~~ 210 (871)
++++|.++.+.+ |++.|.++ ..+-|..+|++|.|||.+|++++|..++- |- ..+....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~l~vkat~liGehVGdgar~ 198 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--LLLVKATELIGEHVGDGARR 198 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--eEEechHHHHHHHhhhHHHH
Confidence 456787776543 56666643 36789999999999999999999988763 33 1223344
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCc--------------cChhhhccccC--CCCCCcEEEEeecCcchhcc--ccCCcce
Q 038510 211 AGRLLERLKKEKKILIILDDIWGG--------------LDLEAIGIPLA--DDNSGCKVLLTARSQDVLSC--KMDCQQN 272 (871)
Q Consensus 211 ~~~l~~~l~~~kr~LlvlDdv~~~--------------~~~~~l~~~l~--~~~~gs~iivTtr~~~va~~--~~~~~~~ 272 (871)
+.++.++..+.-++.+++|.++.. +..+.+...+. ..+.|-.-|..|...+.... ...-..-
T Consensus 199 Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeE 278 (368)
T COG1223 199 IHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEE 278 (368)
T ss_pred HHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhhe
Confidence 556666666678899999998543 11122222221 23456666667766655421 2223456
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
|+...-+++|-..++..++..-.-+ ...-.+.++++.+|.-
T Consensus 279 IEF~LP~~eEr~~ile~y~k~~Plp--v~~~~~~~~~~t~g~S 319 (368)
T COG1223 279 IEFKLPNDEERLEILEYYAKKFPLP--VDADLRYLAAKTKGMS 319 (368)
T ss_pred eeeeCCChHHHHHHHHHHHHhCCCc--cccCHHHHHHHhCCCC
Confidence 7777788999999998887422111 1111445666666653
No 169
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.20 E-value=0.00072 Score=72.17 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=32.1
Q ss_pred HHHHHhc-CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc
Q 038510 162 EILDALS-NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE 203 (871)
Q Consensus 162 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (871)
++++++. =+..+...|+|++|+||||||++||++...+ ||+
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFD 199 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPE 199 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCC
Confidence 3444443 2345788999999999999999999998875 776
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.20 E-value=0.0012 Score=71.35 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=37.7
Q ss_pred ccccCCcEEEecccCCCCCcccCCCCCccEEEeeCC-CccccchhhcCCCCCCEEeCCCCCCCCccCh
Q 038510 540 GLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGS-DVEKLVGEMGQLTQLRLLDLSKCFELKVIPP 606 (871)
Q Consensus 540 ~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 606 (871)
..+.++++|++++|.++.++. -..+|+.|.+++| .++.+|..+ ..+|++|++++|..+..+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 345667777777776666432 2235777777665 555666543 35677777777655555553
No 171
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.014 Score=63.40 Aligned_cols=172 Identities=22% Similarity=0.270 Sum_probs=101.9
Q ss_pred cccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-cc--c----------------------
Q 038510 153 FESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LF--E---------------------- 203 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F--~---------------------- 203 (871)
+.+|+++++++...|. .....-+.|+|..|+|||+.++.+....+... .. -
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999988775 23333499999999999999999998876541 01 0
Q ss_pred -----ccchhhHHHHHHHHHHc-CCcEEEEEecCCCccCh--hhhccccCCCC-CCcEEEE--eecCcchh-------cc
Q 038510 204 -----KSHETVRAGRLLERLKK-EKKILIILDDIWGGLDL--EAIGIPLADDN-SGCKVLL--TARSQDVL-------SC 265 (871)
Q Consensus 204 -----~~~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~~--~~l~~~l~~~~-~gs~iiv--Ttr~~~va-------~~ 265 (871)
..........+.+.+.. ++.+++|||++.....- +.+..-+.... .+++|++ .+-+.... ..
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 01122234455555543 67899999999765332 22222222221 2455443 33332221 11
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHhC----CCC-CCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMTG----DCI-ENGELKSVATEIVKECAGLPIAIVPVARAL 325 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~----~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 325 (871)
..+ ...+..+|-+.+|-.+++..++. ... .+..++-++...++..|-.-.||..+-++.
T Consensus 179 ~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~ 242 (366)
T COG1474 179 SLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAG 242 (366)
T ss_pred ccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 122 23478899999999999998874 122 233344444444444555567776665544
No 172
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.16 E-value=0.0012 Score=60.70 Aligned_cols=87 Identities=23% Similarity=0.295 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhcc----ccc----------------------------c-cchhhHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENN----LFE----------------------------K-SHETVRAGRLLER 217 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~----------------------------~-~~~~~~~~~l~~~ 217 (871)
+.+.+.|+|.+|+|||++++.+.++..... +.+ . .........+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 357899999999999999999998764310 111 0 1223344666777
Q ss_pred HHcCCcEEEEEecCCCc-c--ChhhhccccCCCCCCcEEEEeecC
Q 038510 218 LKKEKKILIILDDIWGG-L--DLEAIGIPLADDNSGCKVLLTARS 259 (871)
Q Consensus 218 l~~~kr~LlvlDdv~~~-~--~~~~l~~~l~~~~~gs~iivTtr~ 259 (871)
+.+.+..+||+||+... . .++.+... .+ ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEECh
Confidence 77666679999999764 2 23333222 12 556667666554
No 173
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.006 Score=65.80 Aligned_cols=138 Identities=11% Similarity=0.085 Sum_probs=87.6
Q ss_pred ccc-chHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc-----cc
Q 038510 153 FES-RKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE-----KS 205 (871)
Q Consensus 153 ~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~-----~~ 205 (871)
++| .+...+.+.+.+..++++ ..-++|+.|+||||+|+.+.+..--.. |-| ..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 455 666777888888766655 558999999999999999977643211 212 11
Q ss_pred ---chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeec
Q 038510 206 ---HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFV 275 (871)
Q Consensus 206 ---~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l 275 (871)
...+.+..+.+.+. .+.+-++|+|++... +..+.+...+-.-..++.+|++|.+. .+.......+..+++
T Consensus 87 ~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~ 166 (329)
T PRK08058 87 GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEF 166 (329)
T ss_pred cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeC
Confidence 11233444444443 245568999998654 23445555554444566666666553 333323445678999
Q ss_pred cCCCHHHHHHHHHHH
Q 038510 276 DVLNEKEAWSLFRKM 290 (871)
Q Consensus 276 ~~L~~~~~~~Lf~~~ 290 (871)
.+++.++..+.+...
T Consensus 167 ~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 167 RPLPPESLIQRLQEE 181 (329)
T ss_pred CCCCHHHHHHHHHHc
Confidence 999999998877653
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.13 E-value=0.0044 Score=74.97 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=37.8
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 152 HFESRKSTFKEILDALS------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++|.++.++++.+++. ....+++.++|++|+|||++|+.+++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 36688888888888664 223468999999999999999999988643
No 175
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.12 E-value=0.00081 Score=68.76 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=28.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE 203 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (871)
.....++|+|++|+|||||++.+|++.... +|+
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fd 46 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPE 46 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCC
Confidence 346789999999999999999999988765 555
No 176
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.10 E-value=0.00016 Score=71.54 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCcceEEEecCCCCC-----CCCCccccccCCcEEEecccCCC---C--C-------cccCCCCCccEEEeeCCCcc-c
Q 038510 518 GMTGLKVLDFTEMHLL-----PLPSSLGLLQNLQTLCLNYCNLG---D--I-------AIIGDLKKLEILSLRGSDVE-K 579 (871)
Q Consensus 518 ~l~~Lr~L~l~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~---~--~-------~~i~~l~~L~~L~l~~~~i~-~ 579 (871)
.+..+..++||||.|. .+-..|.+-.+|+..+++.-..+ + + +.+-+|++|++.++++|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3677888888888876 23445666677888777764321 1 1 34667888888888888554 3
Q ss_pred cc----hhhcCCCCCCEEeCCCCCCCCccChh
Q 038510 580 LV----GEMGQLTQLRLLDLSKCFELKVIPPN 607 (871)
Q Consensus 580 lp----~~i~~L~~L~~L~l~~~~~l~~~p~~ 607 (871)
.| ..|.+-+.|.||.+++| .++.+..+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~ 138 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGG 138 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC-CCCccchh
Confidence 33 34667788888888776 55554433
No 177
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0034 Score=70.11 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=109.3
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc--ccc---------------------
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--LFE--------------------- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~--------------------- 203 (871)
..+..++|.+.....|.+.+..+.. .-....|+-|+||||+|+.++...--.. +.+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviE 92 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIE 92 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchh
Confidence 3456678999999999998886553 4556789999999999999876542221 111
Q ss_pred ----ccchhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcE-EEEeecCcchhccccCCcce
Q 038510 204 ----KSHETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCK-VLLTARSQDVLSCKMDCQQN 272 (871)
Q Consensus 204 ----~~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iivTtr~~~va~~~~~~~~~ 272 (871)
.....+.++.+.+... ++|.-..|+|+|... ..|+.+...+-.-...-. |+.||-...+.......++.
T Consensus 93 iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~ 172 (515)
T COG2812 93 IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQR 172 (515)
T ss_pred hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcccc
Confidence 1112233444555442 356668899999755 567776655543333444 55666667776545566789
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
|.++.++.++-...+...+..+.-.. .++....|++..+|..
T Consensus 173 f~fkri~~~~I~~~L~~i~~~E~I~~-e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 173 FDFKRLDLEEIAKHLAAILDKEGINI-EEDALSLIARAAEGSL 214 (515)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCcc-CHHHHHHHHHHcCCCh
Confidence 99999999988888887775433222 2345566777777754
No 178
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.08 E-value=0.0043 Score=70.31 Aligned_cols=165 Identities=18% Similarity=0.187 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc-----cccccch--h--------hHHHHHHHHHHcCCcEEEEEecCCCccC-
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN-----LFEKSHE--T--------VRAGRLLERLKKEKKILIILDDIWGGLD- 236 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~~--~--------~~~~~l~~~l~~~kr~LlvlDdv~~~~~- 236 (871)
.-+.|+|..|+|||+|++++++....+. .|-.... . .....+.+.+. +.-+|||||+.....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC
Confidence 5689999999999999999999876431 1111000 0 01122333333 234899999965321
Q ss_pred --h-hhhccccCC-CCCCcEEEEeecCcc--hh------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHH
Q 038510 237 --L-EAIGIPLAD-DNSGCKVLLTARSQD--VL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVA 304 (871)
Q Consensus 237 --~-~~l~~~l~~-~~~gs~iivTtr~~~--va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~ 304 (871)
+ +.+...+.. ...|..||+|+.... +. ......+.++++++.+.++-..++.+.+.... ..--+++.
T Consensus 227 ~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~-~~l~~e~l 305 (450)
T PRK00149 227 ERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG-IDLPDEVL 305 (450)
T ss_pred HHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHH
Confidence 2 222221111 122445788776531 11 11334456899999999999999999876321 11224678
Q ss_pred HHHHHHcCCchhHH----HHHHHHH--hcC--ChhHHHHHHHHh
Q 038510 305 TEIVKECAGLPIAI----VPVARAL--INK--RLFEWKDSLLEL 340 (871)
Q Consensus 305 ~~I~~~c~GlPLai----~~~~~~l--~~~--~~~~w~~~~~~l 340 (871)
.-|++.++|..-.+ ..+..+- .++ +.+..+.++..+
T Consensus 306 ~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 306 EFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 88999998876533 3332221 122 677777777765
No 179
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.0039 Score=71.11 Aligned_cols=140 Identities=16% Similarity=0.185 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc---c--cccccch--hh--------HHHHHHHHHHcCCcEEEEEecCCCc---
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN---N--LFEKSHE--TV--------RAGRLLERLKKEKKILIILDDIWGG--- 234 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~---~--~F~~~~~--~~--------~~~~l~~~l~~~kr~LlvlDdv~~~--- 234 (871)
..+.|+|..|+|||.|++++++..... . .|-...+ .. ....+.+++. +-=+|||||+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~--~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR--EMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh--cCCEEEEehhccccCC
Confidence 458999999999999999999987532 0 1111100 00 1112222222 1238999999654
Q ss_pred cChhh-hccccCC-CCCCcEEEEeecCc--chh------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHH
Q 038510 235 LDLEA-IGIPLAD-DNSGCKVLLTARSQ--DVL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVA 304 (871)
Q Consensus 235 ~~~~~-l~~~l~~-~~~gs~iivTtr~~--~va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~ 304 (871)
+.|+. +...+.. ...|..|||||+.. ++. .......-+++++..+.+.-..++.+++....- .--+++.
T Consensus 393 e~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l-~l~~eVi 471 (617)
T PRK14086 393 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL-NAPPEVL 471 (617)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC-CCCHHHH
Confidence 22332 2111111 12345688888763 111 124455678999999999999999988763321 1225677
Q ss_pred HHHHHHcCCch
Q 038510 305 TEIVKECAGLP 315 (871)
Q Consensus 305 ~~I~~~c~GlP 315 (871)
+-|++++.+..
T Consensus 472 ~yLa~r~~rnv 482 (617)
T PRK14086 472 EFIASRISRNI 482 (617)
T ss_pred HHHHHhccCCH
Confidence 77777776554
No 180
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0039 Score=70.52 Aligned_cols=137 Identities=20% Similarity=0.247 Sum_probs=86.0
Q ss_pred cccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--------ccchh---------h
Q 038510 153 FESRKSTFKEILDALS------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--------KSHET---------V 209 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~~~~~---------~ 209 (871)
-+|-++.+++|++.|. .-+.+++++||++|+|||+|++.++.....+ |- ++.+. .
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--fvR~sLGGvrDEAEIRGHRRTYIGa 402 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--FVRISLGGVRDEAEIRGHRRTYIGA 402 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--EEEEecCccccHHHhcccccccccc
Confidence 3588999999999886 2345899999999999999999999877653 44 11110 0
Q ss_pred HHHHHHHHHHc--CCcEEEEEecCCCcc------Chhhhccc--------cCCC-----CCCcEEE-EeecC-cc-hhcc
Q 038510 210 RAGRLLERLKK--EKKILIILDDIWGGL------DLEAIGIP--------LADD-----NSGCKVL-LTARS-QD-VLSC 265 (871)
Q Consensus 210 ~~~~l~~~l~~--~kr~LlvlDdv~~~~------~~~~l~~~--------l~~~-----~~gs~ii-vTtr~-~~-va~~ 265 (871)
...++.+.+++ .+.-+++||.++... .-..+... |.+. --=|.|+ |||-+ -+ ++..
T Consensus 403 mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~P 482 (782)
T COG0466 403 MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAP 482 (782)
T ss_pred CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChH
Confidence 12344444432 467899999996431 01111111 1111 1114443 45544 22 4444
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
..+...++++.+-+++|-.++=+++.
T Consensus 483 LlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 483 LLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred HhcceeeeeecCCChHHHHHHHHHhc
Confidence 56677899999999998887766654
No 181
>PHA00729 NTP-binding motif containing protein
Probab=97.06 E-value=0.0022 Score=63.79 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=64.2
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc--------cccc------ccchhhHHHHHHHHHHcCCc-EEE
Q 038510 162 EILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFE------KSHETVRAGRLLERLKKEKK-ILI 226 (871)
Q Consensus 162 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~------~~~~~~~~~~l~~~l~~~kr-~Ll 226 (871)
++++.+...+...|.|.|.+|+||||||..+.+..-.. ..++ ..+.......+........+ =+|
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dlL 86 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPLI 86 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCEE
Confidence 45555556666789999999999999999999875311 0111 11122333444443332222 379
Q ss_pred EEecC--CCcc-Chhhh--ccccCCCCCCcEEEEeecCcchhccccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 227 ILDDI--WGGL-DLEAI--GIPLADDNSGCKVLLTARSQDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 227 vlDdv--~~~~-~~~~l--~~~l~~~~~gs~iivTtr~~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
|+||+ |-.. .|..- ...+ .+..........+.+.+++.++..+.++.+.
T Consensus 87 IIDd~G~~~~~~~wh~~~~~~yf----------------~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 87 IFDDAGIWLSKYVWYEDYMKTFY----------------KIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred EEeCCchhhcccchhhhccchHH----------------HHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 99994 4332 24411 0000 0111112234567788888899988888754
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.015 Score=61.95 Aligned_cols=155 Identities=12% Similarity=0.129 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc-----c-cc---h
Q 038510 158 STFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE-----K-SH---E 207 (871)
Q Consensus 158 ~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~-----~-~~---~ 207 (871)
...+.+...+..+.+ ..+.+.|+.|+||+++|+.++...--.. |=| . .. .
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC
Confidence 345667777766554 5677899999999999999987543211 111 1 11 1
Q ss_pred hhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeeccCCCH
Q 038510 208 TVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNE 280 (871)
Q Consensus 208 ~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l~~L~~ 280 (871)
.+.+..+.+.+. .+++-++|+|++..- ...+.+...+-.-..+..+|++|.+. .+.......+..+.+.++++
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~ 168 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEE 168 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCH
Confidence 223444444442 256678889999765 34555555554444556666666654 44432334467899999999
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 281 KEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 281 ~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
++..+.+....... ...+...+..++|.|+.+
T Consensus 169 ~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 169 QQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 99998887764211 112556788899999643
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.013 Score=62.28 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhc-----------------cccc---c--cc-------
Q 038510 157 KSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKEN-----------------NLFE---K--SH------- 206 (871)
Q Consensus 157 ~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-----------------~~F~---~--~~------- 206 (871)
+...+.+...+..++++ .+.++|+.|+||+++|..++...--. .|=| . ..
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~ 89 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKL 89 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccc
Confidence 34566777777766655 58899999999999999887654211 1111 0 00
Q ss_pred ----hhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcceeec
Q 038510 207 ----ETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQNFFV 275 (871)
Q Consensus 207 ----~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~~~l 275 (871)
..+.+..+.+.+. .+++-++|+|++... ..-+.+...+-.-..++.+|++|.+ ..+......-+..+.+
T Consensus 90 ~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~ 169 (319)
T PRK08769 90 RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEF 169 (319)
T ss_pred cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeC
Confidence 0122333334332 246679999999765 2334444444333345666666655 4444333444678899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 276 DVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 276 ~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
.+++.+++.+.+... + .+ +..+..++..++|.|+.+..+
T Consensus 170 ~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 170 KLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 999999998888653 1 11 223667899999999866543
No 184
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0014 Score=70.95 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=59.5
Q ss_pred cccccchH---HHHHHHHHhcCC--------C-ceEEEEEcCCCCcHhHHHHHHHHHHhhccc------ccc---cchhh
Q 038510 151 MHFESRKS---TFKEILDALSNR--------D-FNMIGVYGMGGIGKTTLVKEVGRQAKENNL------FEK---SHETV 209 (871)
Q Consensus 151 ~~~~gr~~---~~~~l~~~l~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~------F~~---~~~~~ 209 (871)
.++.|.|+ ++++|+++|.++ + .+=|.++|++|.|||-||++|+-.+.+-.. ||. .....
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGAr 383 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGAR 383 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHH
Confidence 34445554 677888888753 2 457889999999999999999998887532 221 12234
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 210 RAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 210 ~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
++..+....+..-++.|++|.++..
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhhh
Confidence 5566666666677899999998643
No 185
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.02 E-value=0.0075 Score=72.28 Aligned_cols=138 Identities=19% Similarity=0.234 Sum_probs=82.8
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----ccchh-h----------
Q 038510 152 HFESRKSTFKEILDALS------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----KSHET-V---------- 209 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~~~-~---------- 209 (871)
..+|.++.+++|++++. .....++.++|++|+||||+|+.++...... |- ...+. .
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~~~i~~~~~~d~~~i~g~~~~~~g 400 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--YVRMALGGVRDEAEIRGHRRTYIG 400 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEEcCCCCCHHHhccchhccCC
Confidence 46799999999998886 2345789999999999999999999865532 32 10000 0
Q ss_pred -HHHHHHHHHHc--CCcEEEEEecCCCccC------hhhhccccCC---------------CCCCcEEEEeecCcchhcc
Q 038510 210 -RAGRLLERLKK--EKKILIILDDIWGGLD------LEAIGIPLAD---------------DNSGCKVLLTARSQDVLSC 265 (871)
Q Consensus 210 -~~~~l~~~l~~--~kr~LlvlDdv~~~~~------~~~l~~~l~~---------------~~~gs~iivTtr~~~va~~ 265 (871)
....+.+.+.. ...-+++||++..... .+.+...+.. .-...-+|.||....+...
T Consensus 401 ~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~a 480 (784)
T PRK10787 401 SMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAP 480 (784)
T ss_pred CCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHH
Confidence 01223333332 1345789999965421 1222221111 1122334556655554433
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
..+-..++.+.+++.++-.++.+++.
T Consensus 481 Ll~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 481 LLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HhcceeeeecCCCCHHHHHHHHHHhh
Confidence 34445688999999998888877664
No 186
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=8.5e-05 Score=74.31 Aligned_cols=81 Identities=27% Similarity=0.361 Sum_probs=43.3
Q ss_pred CCCcceEEEecCCCCC---CCCCccccccCCcEEEecccCCCC-Cccc-CCCCCccEEEeeCCCc--cccchhhcCCCCC
Q 038510 518 GMTGLKVLDFTEMHLL---PLPSSLGLLQNLQTLCLNYCNLGD-IAII-GDLKKLEILSLRGSDV--EKLVGEMGQLTQL 590 (871)
Q Consensus 518 ~l~~Lr~L~l~~~~i~---~lp~~i~~l~~Lr~L~L~~~~i~~-~~~i-~~l~~L~~L~l~~~~i--~~lp~~i~~L~~L 590 (871)
.+..++.|||.+|.|+ ++-.-+.+|++|++|+|+.|.+.. +.+. ..+.+|++|-+.++.+ +...+.+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3556666666666655 222223456666666666666544 3333 3555666666666533 2444445555555
Q ss_pred CEEeCCCC
Q 038510 591 RLLDLSKC 598 (871)
Q Consensus 591 ~~L~l~~~ 598 (871)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 65555554
No 187
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.98 E-value=0.012 Score=63.27 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=104.9
Q ss_pred CccccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-ccc--------------------
Q 038510 149 DFMHFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFE-------------------- 203 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-------------------- 203 (871)
.+....||+.+++.+.+|+. ....+.+.|.|.+|.|||.+...++.+..... .|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34568899999999999886 45578899999999999999999988765321 122
Q ss_pred ---------ccchhhHHHHHHHHHHcCC-cEEEEEecCCCccC--hhhhccccC-CCCCCcEEEE---------eecCcc
Q 038510 204 ---------KSHETVRAGRLLERLKKEK-KILIILDDIWGGLD--LEAIGIPLA-DDNSGCKVLL---------TARSQD 261 (871)
Q Consensus 204 ---------~~~~~~~~~~l~~~l~~~k-r~LlvlDdv~~~~~--~~~l~~~l~-~~~~gs~iiv---------Ttr~~~ 261 (871)
...+.+....+..+..+.+ -+|+|+|..+.... -..+...|. +.-++||+|+ |-|.-.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 0011112334444444333 68999999875421 112222222 2335666543 333211
Q ss_pred hhcc-ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHc----CCchhHHHHHHHHH
Q 038510 262 VLSC-KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKEC----AGLPIAIVPVARAL 325 (871)
Q Consensus 262 va~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c----~GlPLai~~~~~~l 325 (871)
-... ..-....+..+|-+.++-.++|..+.........+....+-+++|| |.+--|+.+.-+++
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1110 1223467888999999999999998865544443334444455555 44445555444433
No 188
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.026 Score=59.91 Aligned_cols=155 Identities=14% Similarity=0.131 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc-------------------cccc-----cc--c---h
Q 038510 158 STFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN-------------------NLFE-----KS--H---E 207 (871)
Q Consensus 158 ~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~-----~~--~---~ 207 (871)
...+++.+.+..+++ ..+-++|+.|+||+++|+.+....--. .|-| .. . .
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~ 89 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCC
Confidence 445667777765554 478899999999999999987654211 1211 11 1 1
Q ss_pred hhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcceeeccCCCH
Q 038510 208 TVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNE 280 (871)
Q Consensus 208 ~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~~~l~~L~~ 280 (871)
.+.+..+.+.+. .+++-.+|+|++... ...+.+...+-.-..++.+|++|.+ ..+.......+..+.+.+++.
T Consensus 90 vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~ 169 (319)
T PRK06090 90 VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPST 169 (319)
T ss_pred HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCH
Confidence 223334444442 245668899999755 4455555555443455665555554 445433445567899999999
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 281 KEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 281 ~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
+++.+.+...... .+..++..++|.|+.+..+
T Consensus 170 ~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 170 AQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH
Confidence 9998888654111 1356789999999876543
No 189
>PRK08181 transposase; Validated
Probab=96.97 E-value=0.0046 Score=64.00 Aligned_cols=92 Identities=23% Similarity=0.263 Sum_probs=50.2
Q ss_pred HHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cccccc----------hhhHHHHHHHHHHcCCcEEEEEecC
Q 038510 165 DALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFEKSH----------ETVRAGRLLERLKKEKKILIILDDI 231 (871)
Q Consensus 165 ~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~----------~~~~~~~l~~~l~~~kr~LlvlDdv 231 (871)
+|+.. ..-+.++|++|+|||.||..+.+....++ .|-... ......+..+.+. +-=||||||+
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDl 176 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDL 176 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEecc
Confidence 56543 34689999999999999999998765432 121110 0011223334443 3459999999
Q ss_pred CCc--cCh-hh-hccccCCCCCCcEEEEeecCc
Q 038510 232 WGG--LDL-EA-IGIPLADDNSGCKVLLTARSQ 260 (871)
Q Consensus 232 ~~~--~~~-~~-l~~~l~~~~~gs~iivTtr~~ 260 (871)
... ..| .. +...+.....+..+||||...
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 644 222 21 222221111112488888764
No 190
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.90 E-value=0.0083 Score=67.32 Aligned_cols=166 Identities=15% Similarity=0.180 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc-----cccccch--h--------hHHHHHHHHHHcCCcEEEEEecCCCcc--
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN-----LFEKSHE--T--------VRAGRLLERLKKEKKILIILDDIWGGL-- 235 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~~~~--~--------~~~~~l~~~l~~~kr~LlvlDdv~~~~-- 235 (871)
.-+.|+|..|+|||+||+++++...... .|-.... . .......+.+. .+.-+|++||+....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR-KKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHH-hcCCEEEEechhhhcCc
Confidence 4589999999999999999999865421 1111000 0 01112222222 134589999997431
Q ss_pred -Ch-hhhccccCC-CCCCcEEEEeecCc-c-hh------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHH
Q 038510 236 -DL-EAIGIPLAD-DNSGCKVLLTARSQ-D-VL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVA 304 (871)
Q Consensus 236 -~~-~~l~~~l~~-~~~gs~iivTtr~~-~-va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~ 304 (871)
.+ +.+...+.. ...|..||+||... . +. ..+...+.++.+++.+.++-..++.+.+..... .--+++.
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~-~l~~ev~ 288 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG-ELPEEVL 288 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC-CCCHHHH
Confidence 12 122222211 12244688887532 1 11 112344568899999999999999988753211 1124678
Q ss_pred HHHHHHcCCchhHHH----HHHH--HHhcC--ChhHHHHHHHHh
Q 038510 305 TEIVKECAGLPIAIV----PVAR--ALINK--RLFEWKDSLLEL 340 (871)
Q Consensus 305 ~~I~~~c~GlPLai~----~~~~--~l~~~--~~~~w~~~~~~l 340 (871)
..|++.+.|.--.+. -+.. .+.++ +.+.-+.++..+
T Consensus 289 ~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 289 NFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 888888887543222 2211 11122 666666676654
No 191
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.90 E-value=0.011 Score=71.26 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=93.4
Q ss_pred cccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cc
Q 038510 151 MHFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SH 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~ 206 (871)
..+.|.+..++++.+.+. -...+-+.++|++|+|||++|+++++.... .|-. ..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--NFIAVRGPEILSKWVGE 530 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CEEEEehHHHhhcccCc
Confidence 345677777666665543 112345889999999999999999987653 2331 01
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCcc--------C------hhhhccccCC--CCCCcEEEEeecCcchhc-ccc--
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGL--------D------LEAIGIPLAD--DNSGCKVLLTARSQDVLS-CKM-- 267 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~------~~~l~~~l~~--~~~gs~iivTtr~~~va~-~~~-- 267 (871)
....+..+.+......+.+|++|++.... . ...+...+.. ...+--||.||...+... ...
T Consensus 531 se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRp 610 (733)
T TIGR01243 531 SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRP 610 (733)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCC
Confidence 12234455555555678999999985420 0 1112222211 122334555665544331 111
Q ss_pred -CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 268 -DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 268 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.-+..+.++..+.++-.++|+.+.......+.. -...+++.+.|.-
T Consensus 611 gRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 611 GRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred CccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 345678899999999999998766532221111 1355777787764
No 192
>PRK08118 topology modulation protein; Reviewed
Probab=96.85 E-value=0.0022 Score=61.61 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc-ccccc--------cchhhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEK--------SHETVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~--------~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
+.|.|+|++|+||||||+.+++..... -+||. .........+.+.+.++.. .|+|..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~~~~--wVidG~~~ 69 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVKEDE--WIIDGNYG 69 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhcCCC--EEEeCCcc
Confidence 468999999999999999999987654 23441 1112233444444443344 57787644
No 193
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.83 E-value=0.0024 Score=62.82 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc
Q 038510 155 SRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE 203 (871)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (871)
.+.......++.|. +..++.+.|++|.|||.||.+..-+.-..+.|+
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~ 50 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYD 50 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc
Confidence 44555666677666 467999999999999999999887665545555
No 194
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.82 E-value=0.0035 Score=58.27 Aligned_cols=66 Identities=30% Similarity=0.344 Sum_probs=43.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc--ccc--c----------------------cchhhHHHHHHHHHHcCCcEEE
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN--LFE--K----------------------SHETVRAGRLLERLKKEKKILI 226 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~--~----------------------~~~~~~~~~l~~~l~~~kr~Ll 226 (871)
..+.|+|++|+||||+|+.++....... -+. . .........+.+.....+..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 5789999999999999999998776542 111 0 0111223344444443334999
Q ss_pred EEecCCCccChh
Q 038510 227 ILDDIWGGLDLE 238 (871)
Q Consensus 227 vlDdv~~~~~~~ 238 (871)
++|+++......
T Consensus 83 iiDei~~~~~~~ 94 (148)
T smart00382 83 ILDEITSLLDAE 94 (148)
T ss_pred EEECCcccCCHH
Confidence 999998775433
No 195
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=8.8e-05 Score=73.50 Aligned_cols=79 Identities=23% Similarity=0.189 Sum_probs=34.4
Q ss_pred cceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeCCCccccc--hhhcCCCCCCEEeCCCC
Q 038510 521 GLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGSDVEKLV--GEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 521 ~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~ 598 (871)
+.+.|++.||.+..+. -...++.|++|.|+-|+|+.+..+..|++|+.|+|+.|.|..+- ..+.++++|+.|-|..|
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3444444444444321 12234444444444444444444444444444444444444332 12344444444444444
Q ss_pred CC
Q 038510 599 FE 600 (871)
Q Consensus 599 ~~ 600 (871)
+.
T Consensus 99 PC 100 (388)
T KOG2123|consen 99 PC 100 (388)
T ss_pred Cc
Confidence 33
No 196
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.81 E-value=0.012 Score=62.31 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cchhhHHHHHHHHH-----HcCCcEEEEEecCCC
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SHETVRAGRLLERL-----KKEKKILIILDDIWG 233 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~~~~~~~~l~~~l-----~~~kr~LlvlDdv~~ 233 (871)
.-...++|||++|+|||.+|+++++..... |-. -.....+..+.+.. .+++.++|++||++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~--~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE--PIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC--eEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 345789999999999999999999987763 330 11122233333222 235799999999863
Q ss_pred cc--------Ch------hhhccc--------cC------CCCCCcEEEEeecCcchh-ccccCC---cceeeccCCCHH
Q 038510 234 GL--------DL------EAIGIP--------LA------DDNSGCKVLLTARSQDVL-SCKMDC---QQNFFVDVLNEK 281 (871)
Q Consensus 234 ~~--------~~------~~l~~~--------l~------~~~~gs~iivTtr~~~va-~~~~~~---~~~~~l~~L~~~ 281 (871)
.. .. ..+... ++ ....+-.||+||...... ...... +..| ..-+.+
T Consensus 224 ~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e 301 (413)
T PLN00020 224 GAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRE 301 (413)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHH
Confidence 31 00 011110 10 123445678888765543 111111 1223 334566
Q ss_pred HHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcC----ChhHHH
Q 038510 282 EAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINK----RLFEWK 334 (871)
Q Consensus 282 ~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~----~~~~w~ 334 (871)
+-.++++........+ ..-..+|++...|-|+ -+-++|+.+ ...+|-
T Consensus 302 ~R~eIL~~~~r~~~l~---~~dv~~Lv~~f~gq~~---Df~GAlrar~yd~~v~~~i 352 (413)
T PLN00020 302 DRIGVVHGIFRDDGVS---REDVVKLVDTFPGQPL---DFFGALRARVYDDEVRKWI 352 (413)
T ss_pred HHHHHHHHHhccCCCC---HHHHHHHHHcCCCCCc---hhhhHHHHHHHHHHHHHHH
Confidence 6666776655433222 1334456666666553 234455543 345553
No 197
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.81 E-value=9.8e-05 Score=65.39 Aligned_cols=101 Identities=21% Similarity=0.260 Sum_probs=58.2
Q ss_pred cceEEEecCCCCCCCCC---ccccccCCcEEEecccCCCC-Ccc-cCCCCCccEEEeeCCCccccchhhcCCCCCCEEeC
Q 038510 521 GLKVLDFTEMHLLPLPS---SLGLLQNLQTLCLNYCNLGD-IAI-IGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDL 595 (871)
Q Consensus 521 ~Lr~L~l~~~~i~~lp~---~i~~l~~Lr~L~L~~~~i~~-~~~-i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l 595 (871)
.+..++|+.|++-.+++ .+....+|...+|++|.+++ |+. ..+.+.+.+|++.+|.+..+|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 34455666665543333 23444566666666666655 433 33445677777777777777766777777777777
Q ss_pred CCCCCCCccChhhhhCCCCCcEEecccC
Q 038510 596 SKCFELKVIPPNVISSLSRLEELYIGES 623 (871)
Q Consensus 596 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 623 (871)
+.| .+...|.- +..|.+|-.|+..++
T Consensus 108 ~~N-~l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 108 RFN-PLNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred ccC-ccccchHH-HHHHHhHHHhcCCCC
Confidence 765 44444443 444555555554444
No 198
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.01 Score=71.65 Aligned_cols=163 Identities=13% Similarity=0.182 Sum_probs=92.6
Q ss_pred ccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------c
Q 038510 150 FMHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------S 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~ 205 (871)
...+.|.+..++++.+++.- ...+-+.++|++|+|||+||+.+++..... |-. .
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~--~i~i~~~~i~~~~~g 254 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY--FISINGPEIMSKYYG 254 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe--EEEEecHHHhccccc
Confidence 44577998888888776531 223568899999999999999999876532 320 0
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc--------C-----hhhhccccCC-CCCCcEEEE-eecCcc-hhccc---
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL--------D-----LEAIGIPLAD-DNSGCKVLL-TARSQD-VLSCK--- 266 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~-----~~~l~~~l~~-~~~gs~iiv-Ttr~~~-va~~~--- 266 (871)
........+.+........+|++||+.... . ...+...+.. ...+..++| ||.... +....
T Consensus 255 ~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~ 334 (733)
T TIGR01243 255 ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRP 334 (733)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCc
Confidence 112234445555555567899999985431 0 1112222211 122333444 444322 11101
Q ss_pred cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh
Q 038510 267 MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI 316 (871)
Q Consensus 267 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 316 (871)
..-...+.+...+.++-.+++..........+ ......+++.+.|.--
T Consensus 335 gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 335 GRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred hhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 11235678888888888888886554322111 1124668888888653
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.80 E-value=0.0055 Score=58.56 Aligned_cols=125 Identities=16% Similarity=0.129 Sum_probs=74.4
Q ss_pred cchHHHHHHHHHhcCCCce-EEEEEcCCCCcHhHHHHHHHHHHhhcc-------------------ccc-----cc----
Q 038510 155 SRKSTFKEILDALSNRDFN-MIGVYGMGGIGKTTLVKEVGRQAKENN-------------------LFE-----KS---- 205 (871)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~-----~~---- 205 (871)
|.++..+.+.+.+..++++ .+.++|+.|+||+|+|..+.+..--.. |-| ..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777888887777665 579999999999999999887542221 111 11
Q ss_pred -chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcc-hhccccCCcceeeccC
Q 038510 206 -HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNFFVDV 277 (871)
Q Consensus 206 -~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~~l~~ 277 (871)
-..+.+..+.+.+. .+++-.+|+||+... +.++.+...+-.-..++++|++|++.. +......-...+.+.+
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 12233444544442 246779999999865 456666666555567788888887754 3332334455666666
Q ss_pred CC
Q 038510 278 LN 279 (871)
Q Consensus 278 L~ 279 (871)
|+
T Consensus 161 ls 162 (162)
T PF13177_consen 161 LS 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 53
No 200
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.78 E-value=0.0067 Score=67.88 Aligned_cols=139 Identities=12% Similarity=0.121 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc-c--ccccch--h--------hHHHHHHHHHHcCCcEEEEEecCCCccC---
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN-L--FEKSHE--T--------VRAGRLLERLKKEKKILIILDDIWGGLD--- 236 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--F~~~~~--~--------~~~~~l~~~l~~~kr~LlvlDdv~~~~~--- 236 (871)
.-+.|+|+.|+|||+|++++++...... . |-.... . .......+.+. +.-++++||+.....
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~--~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR--NVDALFIEDIEVFSGKGA 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc--cCCEEEEcchhhhcCChh
Confidence 4678999999999999999999875321 1 111000 0 01111222222 334889999865422
Q ss_pred h-hhhccccCC-CCCCcEEEEeecCcc--hh------ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHH
Q 038510 237 L-EAIGIPLAD-DNSGCKVLLTARSQD--VL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATE 306 (871)
Q Consensus 237 ~-~~l~~~l~~-~~~gs~iivTtr~~~--va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~ 306 (871)
+ +.+...+.. ...|..||+||.... .. ..+...+..+.+++++.++-..++.+.+.... ..--+++..-
T Consensus 220 ~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~-~~l~~evl~~ 298 (445)
T PRK12422 220 TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS-IRIEETALDF 298 (445)
T ss_pred hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 1 122222110 113456888885521 11 11334457899999999999999988875322 1112456666
Q ss_pred HHHHcCCc
Q 038510 307 IVKECAGL 314 (871)
Q Consensus 307 I~~~c~Gl 314 (871)
|+..+.|.
T Consensus 299 la~~~~~d 306 (445)
T PRK12422 299 LIEALSSN 306 (445)
T ss_pred HHHhcCCC
Confidence 77776644
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.76 E-value=0.013 Score=71.22 Aligned_cols=84 Identities=14% Similarity=0.286 Sum_probs=54.2
Q ss_pred cccccchHHHHHHHHHhc-------C--CCceEEEEEcCCCCcHhHHHHHHHHHHhhc-c---ccc-----ccc------
Q 038510 151 MHFESRKSTFKEILDALS-------N--RDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-N---LFE-----KSH------ 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---~F~-----~~~------ 206 (871)
..++|.+..++.+.+.+. + ....++.++|+.|+|||.+|+.++...-.. . .|+ ...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~ 645 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK 645 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence 356799998888888774 1 234578999999999999999887765321 1 122 000
Q ss_pred -------hhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 207 -------ETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 207 -------~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.......+.+.+.+...-+|+||++...
T Consensus 646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 0001123455566556779999999654
No 202
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.028 Score=62.44 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=61.2
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------ccc
Q 038510 150 FMHFESRKSTFKEILDALS---N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KSH 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~~ 206 (871)
...+-|.+..+.++.+++. . ...+=|.++|++|+|||.||+++++...+- |- ...
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP--f~~isApeivSGvSGE 266 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP--FLSISAPEIVSGVSGE 266 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc--eEeecchhhhcccCcc
Confidence 4556788888887777654 1 234678899999999999999999998874 43 112
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.+..+.++.+.....-++++++|+++..
T Consensus 267 SEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 267 SEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred cHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2345666777766678999999999644
No 203
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0084 Score=69.87 Aligned_cols=142 Identities=17% Similarity=0.236 Sum_probs=90.1
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---------ccc------------ccchh
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---------LFE------------KSHET 208 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F~------------~~~~~ 208 (871)
..+++||++++.+++..|....-.--.++|.+|+|||++|.-++...-... -+. ....+
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFE 248 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFE 248 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHH
Confidence 356889999999999999843222234689999999998887776543321 111 12335
Q ss_pred hHHHHHHHHHHcCCcEEEEEecCCCcc----------ChhhhccccCCCCCCcEEEEeecCcchh-----ccccCCccee
Q 038510 209 VRAGRLLERLKKEKKILIILDDIWGGL----------DLEAIGIPLADDNSGCKVLLTARSQDVL-----SCKMDCQQNF 273 (871)
Q Consensus 209 ~~~~~l~~~l~~~kr~LlvlDdv~~~~----------~~~~l~~~l~~~~~gs~iivTtr~~~va-----~~~~~~~~~~ 273 (871)
.+...+.+.+.+.++..|++|.+...- +-..+..|-...+.--.|-.||-++.-- ......-+.+
T Consensus 249 eRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V 328 (786)
T COG0542 249 ERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQKV 328 (786)
T ss_pred HHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCcee
Confidence 566777777776668999999986441 1112222222222233466777765321 1123345678
Q ss_pred eccCCCHHHHHHHHHHHh
Q 038510 274 FVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 274 ~l~~L~~~~~~~Lf~~~~ 291 (871)
.+..-+.+++..+++...
T Consensus 329 ~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 329 LVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 899999999999987654
No 204
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.037 Score=59.50 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhc--------------------cccc-----ccc-----
Q 038510 158 STFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKEN--------------------NLFE-----KSH----- 206 (871)
Q Consensus 158 ~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~-----~~~----- 206 (871)
...+++...+.++++ ..+-+.|+.|+||+++|..++...--. .|=| ...
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccC
Confidence 445677777776554 567799999999999999987765221 1111 111
Q ss_pred hhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecC-cchhccccCCcceeeccCCC
Q 038510 207 ETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLN 279 (871)
Q Consensus 207 ~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~~~l~~L~ 279 (871)
..+.+..+.+.+. .+++-++|+|+++.- +..+.+...+-.-..++.+|++|.+ ..+......-+..+.+.+++
T Consensus 89 ~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~ 168 (334)
T PRK07993 89 GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPP 168 (334)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCC
Confidence 1223444444443 256779999998754 3455555555443455666666655 44543233445678999999
Q ss_pred HHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 280 EKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 280 ~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
.++..+.+....+ . + .+.+..++..++|.|..+.
T Consensus 169 ~~~~~~~L~~~~~--~-~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 169 EQYALTWLSREVT--M-S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHHHHHHHccC--C-C---HHHHHHHHHHcCCCHHHHH
Confidence 9999887765422 1 1 2236678999999996443
No 205
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.02 Score=64.30 Aligned_cols=141 Identities=16% Similarity=0.190 Sum_probs=83.4
Q ss_pred cccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cc
Q 038510 151 MHFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SH 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~ 206 (871)
.++-|-++.+.+|-..+. -...+-|..+|++|+|||++|+++++..... |-. ..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n--FlsvkgpEL~sk~vGe 511 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN--FLSVKGPELFSKYVGE 511 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC--eeeccCHHHHHHhcCc
Confidence 345566666666654443 1346788999999999999999999987753 441 12
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCccC-------------hhhhccccCCCCCCcEEEE---eecCcchhccccC--
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGLD-------------LEAIGIPLADDNSGCKVLL---TARSQDVLSCKMD-- 268 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~-------------~~~l~~~l~~~~~gs~iiv---Ttr~~~va~~~~~-- 268 (871)
.+..+..+.+.-++--..+++||.++.... +..+..-+........|+| |-|...+-...+.
T Consensus 512 SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPG 591 (693)
T KOG0730|consen 512 SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPG 591 (693)
T ss_pred hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCc
Confidence 233445555555555679999999865411 1122222211112223333 3333322121233
Q ss_pred -CcceeeccCCCHHHHHHHHHHHhCC
Q 038510 269 -CQQNFFVDVLNEKEAWSLFRKMTGD 293 (871)
Q Consensus 269 -~~~~~~l~~L~~~~~~~Lf~~~~~~ 293 (871)
-++.+.++.-+.+.-.++|+.++..
T Consensus 592 RlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 592 RLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccceeEeecCccHHHHHHHHHHHHhc
Confidence 4567778777788888999998864
No 206
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.60 E-value=0.0079 Score=62.61 Aligned_cols=42 Identities=29% Similarity=0.469 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHH
Q 038510 152 HFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVG 193 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~ 193 (871)
++-+|..+..--+++|.++++..|.+.|.+|.|||.||-+..
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHH
Confidence 345677777778899999999999999999999999987754
No 207
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.57 E-value=0.014 Score=70.32 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=52.8
Q ss_pred ccccchHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHhHHHHHHHHHHhhc-cccccc------c---------
Q 038510 152 HFESRKSTFKEILDALSN-------R--DFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKS------H--------- 206 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~------~--------- 206 (871)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.++...... -.|+.. .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 456778778887776651 1 23468899999999999999998876421 012200 0
Q ss_pred ---hhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 207 ---ETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 207 ---~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.......+.+.+.....-+++||+++..
T Consensus 535 gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 535 GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred CCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 0011223555555545569999999755
No 208
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.017 Score=62.65 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=72.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhccc---ccccchh------------hHHHHHHHHHHcCCcEEEEEecCCCcc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNL---FEKSHET------------VRAGRLLERLKKEKKILIILDDIWGGL 235 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~~~------------~~~~~l~~~l~~~kr~LlvlDdv~~~~ 235 (871)
.-..+.|||..|.|||.|++++.+....... +-..+.. ...++.++.. .-=++++||++...
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y---~~dlllIDDiq~l~ 188 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY---SLDLLLIDDIQFLA 188 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh---ccCeeeechHhHhc
Confidence 3678999999999999999999998765311 1111111 1112222222 12388999997542
Q ss_pred ---Chhh-hccccCC-CCCCcEEEEeecCcchh--------ccccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 236 ---DLEA-IGIPLAD-DNSGCKVLLTARSQDVL--------SCKMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 236 ---~~~~-l~~~l~~-~~~gs~iivTtr~~~va--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
.|+. +-..|.. ...|-.||+|++...-. ..+...+-.+++.+.+.+....++.+.+.
T Consensus 189 gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 189 GKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred CChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 2332 2222211 12233799998663211 12345567899999999999999998775
No 209
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.52 E-value=0.0051 Score=66.25 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=28.0
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE 203 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (871)
+....++|+|++|+|||||++.+++....+ ||+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfd 198 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPE 198 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCc
Confidence 345789999999999999999999987654 665
No 210
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.00019 Score=71.23 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=43.5
Q ss_pred CCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC---CcccCCCCCccEEE
Q 038510 495 CPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD---IAIIGDLKKLEILS 571 (871)
Q Consensus 495 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~---~~~i~~l~~L~~L~ 571 (871)
+.+.+.|++.++...++. ++.+|+.|.||.|+-|.|+++ ..+..+++|+.|+|+.|.|.+ +..+.++++|++|=
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344555555555554442 355566666666666666554 245556666666666666554 23455566666665
Q ss_pred eeCC
Q 038510 572 LRGS 575 (871)
Q Consensus 572 l~~~ 575 (871)
|..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 5544
No 211
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.52 E-value=0.079 Score=57.41 Aligned_cols=167 Identities=15% Similarity=0.188 Sum_probs=103.7
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHH-HHHHHHHhhc-------------------------cccc------
Q 038510 156 RKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLV-KEVGRQAKEN-------------------------NLFE------ 203 (871)
Q Consensus 156 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-------------------------~~F~------ 203 (871)
|.+..++|..||.+..-.+|.|.|+-|.||+.|+ .++..+.+.. +.|.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~n 80 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMN 80 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHH
Confidence 5677899999999888899999999999999999 6665543211 1111
Q ss_pred --------------------ccchhhHHHHHHH-------HH--------------------H--cCCcEEEEEecCCCc
Q 038510 204 --------------------KSHETVRAGRLLE-------RL--------------------K--KEKKILIILDDIWGG 234 (871)
Q Consensus 204 --------------------~~~~~~~~~~l~~-------~l--------------------~--~~kr~LlvlDdv~~~ 234 (871)
.++.+....++++ .+ . ..+|-+||+|+.-..
T Consensus 81 Siss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k 160 (431)
T PF10443_consen 81 SISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHK 160 (431)
T ss_pred HHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhcc
Confidence 0111111111111 10 0 123679999998544
Q ss_pred -----------cChhhhccccCCCCCCcEEEEeecCcchhc-----cccCCcceeeccCCCHHHHHHHHHHHhCCCCCC-
Q 038510 235 -----------LDLEAIGIPLADDNSGCKVLLTARSQDVLS-----CKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIEN- 297 (871)
Q Consensus 235 -----------~~~~~l~~~l~~~~~gs~iivTtr~~~va~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~- 297 (871)
.+|.. .+..+ +--.||++|-+..... .....-+.+.+...+.+.|.+....+.......
T Consensus 161 ~~~~~~iy~~laeWAa---~Lv~~-nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~ 236 (431)
T PF10443_consen 161 AEENDFIYDKLAEWAA---SLVQN-NIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDS 236 (431)
T ss_pred CcccchHHHHHHHHHH---HHHhc-CccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccc
Confidence 23432 22222 3345777777654431 112344678999999999999999887532110
Q ss_pred ------------------chhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 038510 298 ------------------GELKSVATEIVKECAGLPIAIVPVARALI 326 (871)
Q Consensus 298 ------------------~~l~~~~~~I~~~c~GlPLai~~~~~~l~ 326 (871)
.....-....++.+||==.-+..+++.++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 237 SDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred ccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 12333456678888888888888888887
No 212
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.51 E-value=0.0022 Score=58.04 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|.|.|++|+||||+|+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998753
No 213
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.51 E-value=0.017 Score=66.39 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=39.8
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
....++|.+..++.+...+......-+-|+|..|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345688999999999887776656677899999999999999998754
No 214
>PRK08116 hypothetical protein; Validated
Probab=96.50 E-value=0.0031 Score=65.70 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=49.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhccc---ccccch-------------hhHHHHHHHHHHcCCcEEEEEecCCC--c
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNL---FEKSHE-------------TVRAGRLLERLKKEKKILIILDDIWG--G 234 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~~-------------~~~~~~l~~~l~~~kr~LlvlDdv~~--~ 234 (871)
..+.++|..|+|||.||.++++....+.. |-.... ......+.+.+.. - =||||||+.. .
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~-~-dlLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVN-A-DLLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcC-C-CEEEEecccCCCC
Confidence 45889999999999999999998754311 111000 0112234444542 2 3899999943 3
Q ss_pred cChhh--hccccCC-CCCCcEEEEeecCc
Q 038510 235 LDLEA--IGIPLAD-DNSGCKVLLTARSQ 260 (871)
Q Consensus 235 ~~~~~--l~~~l~~-~~~gs~iivTtr~~ 260 (871)
.+|.. +...+.. -..|..+|+||...
T Consensus 193 t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 193 TEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 44542 2211111 12455688888653
No 215
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.48 E-value=0.0071 Score=66.27 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 152 HFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
.+++.++..+.+...|... +.|.++|++|+|||++|+.+++.....
T Consensus 176 d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~ 221 (459)
T PRK11331 176 DLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGE 221 (459)
T ss_pred cccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4567788889999888753 477889999999999999999876543
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.48 E-value=0.0042 Score=66.11 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHhcC------CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 152 HFESRKSTFKEILDALSN------RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++|.++.++++++++.. ...+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 588999999999999862 24588999999999999999999987764
No 217
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.059 Score=57.82 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=91.6
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc---------------------cccc-----ccc------
Q 038510 159 TFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN---------------------NLFE-----KSH------ 206 (871)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~-----~~~------ 206 (871)
..+++... .+.-...+.++|+.|+|||++|+.+....--. .|-| ...
T Consensus 9 ~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~ 87 (342)
T PRK06964 9 DWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAP 87 (342)
T ss_pred HHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccc
Confidence 34455553 33334677899999999999999988654211 1111 110
Q ss_pred -------------------------hhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEE
Q 038510 207 -------------------------ETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLL 255 (871)
Q Consensus 207 -------------------------~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iiv 255 (871)
..+.+..+.+.+. .+++-++|+|+++.. ..++.+...+-.-..+..+|.
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL 167 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLL 167 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEE
Confidence 0122334444442 245668889999755 456666555544445665555
Q ss_pred eecC-cchhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 256 TARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 256 Ttr~-~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
+|.+ ..+......-...+.+.+++.++..+.+... + . ++ ...++..++|.|+.+..+
T Consensus 168 ~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~--~--~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 168 VSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G--V--AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred EECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C--C--Ch----HHHHHHHcCCCHHHHHHH
Confidence 5544 5554323344578999999999999888765 1 1 11 223678899999755433
No 218
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.44 E-value=0.0065 Score=55.80 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
.--|.|.|++|+||||+++.+.+..+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3468999999999999999999888765
No 219
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.057 Score=63.19 Aligned_cols=92 Identities=23% Similarity=0.307 Sum_probs=58.0
Q ss_pred ccccchHHHHHHHHHhc-------C--CCceEEEEEcCCCCcHhHHHHHHHHHHhhc----cccccc--chh--------
Q 038510 152 HFESRKSTFKEILDALS-------N--RDFNMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFEKS--HET-------- 208 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~--~~~-------- 208 (871)
.++|.++.+..+.+.+. + ..+.+...+|+.|||||.||++++...-.. -.||.. .+.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIG 571 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIG 571 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhC
Confidence 47799999998888876 2 235678889999999999999998754311 124400 000
Q ss_pred --------hHHHHHHHHHHcCCcE-EEEEecCCCc--cChhhhcccc
Q 038510 209 --------VRAGRLLERLKKEKKI-LIILDDIWGG--LDLEAIGIPL 244 (871)
Q Consensus 209 --------~~~~~l~~~l~~~kr~-LlvlDdv~~~--~~~~~l~~~l 244 (871)
+....+-+.+++ ++| +|.||+|... +..+-+...|
T Consensus 572 aPPGYVGyeeGG~LTEaVRr-~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 572 APPGYVGYEEGGQLTEAVRR-KPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred CCCCCceeccccchhHhhhc-CCCeEEEechhhhcCHHHHHHHHHHh
Confidence 112345555654 667 7777999754 4444444444
No 220
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.42 E-value=0.0015 Score=63.41 Aligned_cols=61 Identities=33% Similarity=0.390 Sum_probs=38.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhccc---cc----------ccchhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNL---FE----------KSHETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~----------~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
..-+.++|..|+|||.||..+.+..-.++. |- ............+.+. +-=||||||+-..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 457999999999999999999987654322 21 1111122334555665 3458889999654
No 221
>PRK06526 transposase; Provisional
Probab=96.41 E-value=0.0026 Score=65.47 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..-+.++|++|+|||+||..+.+....
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 456899999999999999999887654
No 222
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0015 Score=64.95 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCcceEEEecCC--CCC-CCCCccccccCCcEEEecccCCCCC---cccCCCCCccEEEeeCCC
Q 038510 519 MTGLKVLDFTEM--HLL-PLPSSLGLLQNLQTLCLNYCNLGDI---AIIGDLKKLEILSLRGSD 576 (871)
Q Consensus 519 l~~Lr~L~l~~~--~i~-~lp~~i~~l~~Lr~L~L~~~~i~~~---~~i~~l~~L~~L~l~~~~ 576 (871)
+++|+.|.++.| .+. .++-....+++|++|++++|+|+.+ ..+.++.+|..||+.+|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 344444444444 222 2333333334444444444444332 223333444444444443
No 223
>PRK07261 topology modulation protein; Provisional
Probab=96.31 E-value=0.0079 Score=58.14 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhhc-cccc---------ccchhhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKEN-NLFE---------KSHETVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~---------~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
.|.|+|++|+||||||+.+....... -+.| ..+.......+.+.+.+ .+ .|+|+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLK-HD--WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhC-CC--EEEcCcch
Confidence 58999999999999999998765332 0122 11222334444455543 44 67788644
No 224
>PRK09183 transposase/IS protein; Provisional
Probab=96.28 E-value=0.0038 Score=64.67 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+.|+|+.|+|||+||..+.+....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 356789999999999999999876543
No 225
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.064 Score=58.61 Aligned_cols=134 Identities=21% Similarity=0.328 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------ccchhhHHHHHHHHHH---cCCcEEEEEecCCCccC
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KSHETVRAGRLLERLK---KEKKILIILDDIWGGLD 236 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~~~~~~~~~l~~~l~---~~kr~LlvlDdv~~~~~ 236 (871)
....+.+.|++|+|||+||..++.... |. ..++......+...+. +..=-.||+||+...-+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~----FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD 612 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD----FPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLD 612 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC----CCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhc
Confidence 456677899999999999999987544 44 2233344444444443 23456899999988777
Q ss_pred hhhhccc------------cCC-CCCCcE--EEEeecCcchhc-ccc-C-CcceeeccCCCH-HHHHHHHHHHh-CCCCC
Q 038510 237 LEAIGIP------------LAD-DNSGCK--VLLTARSQDVLS-CKM-D-CQQNFFVDVLNE-KEAWSLFRKMT-GDCIE 296 (871)
Q Consensus 237 ~~~l~~~------------l~~-~~~gs~--iivTtr~~~va~-~~~-~-~~~~~~l~~L~~-~~~~~Lf~~~~-~~~~~ 296 (871)
|-.++.. +.. ...|-| |+-||-...|.. +.+ . -...|.++.++. ++..+.++..- |.
T Consensus 613 ~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~fs--- 689 (744)
T KOG0741|consen 613 YVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIFS--- 689 (744)
T ss_pred ccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHccCCC---
Confidence 6654321 211 123334 555666666652 111 1 235788888887 77777776542 22
Q ss_pred CchhHHHHHHHHHHc
Q 038510 297 NGELKSVATEIVKEC 311 (871)
Q Consensus 297 ~~~l~~~~~~I~~~c 311 (871)
+.+.+.++++.+.+|
T Consensus 690 d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 690 DDEVRAIAEQLLSKK 704 (744)
T ss_pred cchhHHHHHHHhccc
Confidence 234455666777766
No 226
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0027 Score=63.23 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=17.1
Q ss_pred cccCCcEEEeccc--CCCC--CcccCCCCCccEEEeeCCCcc
Q 038510 541 LLQNLQTLCLNYC--NLGD--IAIIGDLKKLEILSLRGSDVE 578 (871)
Q Consensus 541 ~l~~Lr~L~L~~~--~i~~--~~~i~~l~~L~~L~l~~~~i~ 578 (871)
.|++|++|.++.| ++.. ...+.++++|++|++++|+++
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3445555555555 2211 223333455555555555443
No 227
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.048 Score=55.16 Aligned_cols=160 Identities=22% Similarity=0.299 Sum_probs=87.5
Q ss_pred cccchHHHHHHHHHhc---------C-C--CceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc----------chhhH
Q 038510 153 FESRKSTFKEILDALS---------N-R--DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS----------HETVR 210 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~---------~-~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~----------~~~~~ 210 (871)
+.|-+..++.|.+... . . .-+-|.++|++|.||+.||++|+..... ..|... .....
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-TFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-TFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-ceEEeehHHHHHHHhccHHHH
Confidence 4466666666666543 1 1 2567889999999999999999987763 234311 11233
Q ss_pred HHHHHHHHHcCCcEEEEEecCCCc---------cChhhhcccc-------CCCCCCcEEEEeecCcchhcc--ccCCcce
Q 038510 211 AGRLLERLKKEKKILIILDDIWGG---------LDLEAIGIPL-------ADDNSGCKVLLTARSQDVLSC--KMDCQQN 272 (871)
Q Consensus 211 ~~~l~~~l~~~kr~LlvlDdv~~~---------~~~~~l~~~l-------~~~~~gs~iivTtr~~~va~~--~~~~~~~ 272 (871)
+..+.+..+++|+-+|++|.|+.. +.-..|...| .....|--|+-.|...-+... +..-...
T Consensus 214 VknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekR 293 (439)
T KOG0739|consen 214 VKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKR 293 (439)
T ss_pred HHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcc
Confidence 445555556789999999999643 1122222211 123344445557766655411 1111223
Q ss_pred eeccCCCHHHHH-HHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 273 FFVDVLNEKEAW-SLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 273 ~~l~~L~~~~~~-~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
|-+ ||++..|. .+|+-+.++.. +.-.++-.+++.++..|.-
T Consensus 294 IYI-PLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 294 IYI-PLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred eec-cCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCCCC
Confidence 333 45555554 45655555322 2222333455666666543
No 228
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.22 E-value=0.062 Score=56.00 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 158 STFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 158 ~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..++++..++..+ .-|.+.|.+|+|||++|+.+++..
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4456666666543 355689999999999999998744
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.17 E-value=0.0073 Score=62.27 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=28.0
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 162 EILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 162 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+.+++. +..-+.++|.+|+|||.||.++.+..-
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 3444544 567889999999999999999999887
No 230
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.17 E-value=0.0089 Score=60.19 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
-.++|+|..|+||||++..+......
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcc
Confidence 36789999999999999998876543
No 231
>PRK06696 uridine kinase; Validated
Probab=96.17 E-value=0.0079 Score=61.08 Aligned_cols=43 Identities=28% Similarity=0.369 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHhc---CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 155 SRKSTFKEILDALS---NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 155 gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.+.+++|.+.+. .+...+|+|.|.+|+||||+|+.+.....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677777777764 45678999999999999999999987654
No 232
>PRK04132 replication factor C small subunit; Provisional
Probab=96.15 E-value=0.05 Score=64.97 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=84.7
Q ss_pred CCCCcHhHHHHHHHHHHhhc---cccc---ccc--hhhHHHHHHHHHHc------CCcEEEEEecCCCcc--Chhhhccc
Q 038510 180 MGGIGKTTLVKEVGRQAKEN---NLFE---KSH--ETVRAGRLLERLKK------EKKILIILDDIWGGL--DLEAIGIP 243 (871)
Q Consensus 180 ~gGiGKTtLa~~v~~~~~~~---~~F~---~~~--~~~~~~~l~~~l~~------~kr~LlvlDdv~~~~--~~~~l~~~ 243 (871)
+.++||||+|..++++.-.. ..|- ..+ ....+..+...+.. .+.-++|+|+++... ..+.+...
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~ 653 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT 653 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHH
Confidence 78899999999999986221 1122 222 12233333332221 135799999998763 45555544
Q ss_pred cCCCCCCcEEEEeecC-cchhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 244 LADDNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 244 l~~~~~gs~iivTtr~-~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
+-.-....++|.+|.+ ..+.......+..+.+.+++.++..+.+...+..+... --++....|++.|+|.+..+..
T Consensus 654 lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 654 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred hhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 4333345565555554 44433234446789999999999888887765432211 1145678999999998854443
No 233
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.12 E-value=0.00078 Score=77.59 Aligned_cols=243 Identities=19% Similarity=0.205 Sum_probs=124.1
Q ss_pred cccCCcEEEecccC-CCC--C-cccCCCCCccEEEeeCC--Ccccc----chhhcCCCCCCEEeCCCCCCCCccChhhhh
Q 038510 541 LLQNLQTLCLNYCN-LGD--I-AIIGDLKKLEILSLRGS--DVEKL----VGEMGQLTQLRLLDLSKCFELKVIPPNVIS 610 (871)
Q Consensus 541 ~l~~Lr~L~L~~~~-i~~--~-~~i~~l~~L~~L~l~~~--~i~~l----p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~ 610 (871)
.+++|+.|.+.+|. +.+ . +....+++|+.|+++++ .+... +.....+++|++|+++.|..+++.--..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36778888888775 444 2 55677888888888763 22211 123445678888888877555544332233
Q ss_pred -CCCCCcEEecccCCC-CccccccccchhcccchhhhccCCCCCeEEEeeccCC---CCCcchhhhccceeEEEEeeecc
Q 038510 611 -SLSRLEELYIGESPI-QWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEK---TIPSDLLFFKILKRYRIFIGYLW 685 (871)
Q Consensus 611 -~L~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~ 685 (871)
.+++|++|.+.+|.. +. .....-..++++|++|++...... .+......+++|+.|.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~-----------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~---- 330 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTD-----------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS---- 330 (482)
T ss_pred hhCCCcceEccCCCCccch-----------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh----
Confidence 267788887665542 11 112223345666777777643221 0111112223333322210
Q ss_pred cCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCce-eccccCCCCCCCCccEEEeecCCCceeEeec
Q 038510 686 SDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMK-NVLCEPGREGFPQLKHLEVRDNRSLFCVVDT 764 (871)
Q Consensus 686 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~ 764 (871)
.. .+..++.+.+.++.... +.........+++|+.+.+..|. ....
T Consensus 331 -------------------~~----------~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~--- 377 (482)
T KOG1947|consen 331 -------------------LN----------GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDL--- 377 (482)
T ss_pred -------------------cC----------CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCc---
Confidence 00 01233334333333222 12222233566777777766664 2111
Q ss_pred CcccccCCcCCccceeeccccccc-cccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHh
Q 038510 765 VDCATALTAFPLLESLFLEDLGNL-EKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEV 843 (871)
Q Consensus 765 ~~~~~~~~~fp~L~~L~l~~~~~l-~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 843 (871)
...+.+.+|+.+ ..+ ......+.+|+.|++..|...+...-......+.+++.+.+.+|+.+..
T Consensus 378 ------------~~~~~l~gc~~l~~~l---~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 378 ------------GLELSLRGCPNLTESL---ELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ------------chHHHhcCCcccchHH---HHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 003445555555 222 1112233448899999987666542222212277788888999988876
Q ss_pred Hhh
Q 038510 844 IFA 846 (871)
Q Consensus 844 i~~ 846 (871)
...
T Consensus 443 ~~~ 445 (482)
T KOG1947|consen 443 KSL 445 (482)
T ss_pred hhh
Confidence 664
No 234
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.12 E-value=0.0099 Score=63.03 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=58.7
Q ss_pred cchHHHHHHHHHhcC----CCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cccccc----------hhhHHHHHHHH
Q 038510 155 SRKSTFKEILDALSN----RDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFEKSH----------ETVRAGRLLER 217 (871)
Q Consensus 155 gr~~~~~~l~~~l~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~----------~~~~~~~l~~~ 217 (871)
+|........+++.+ ...+-+.++|..|+|||.||.++++....++ .|-... .........+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~ 214 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA 214 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH
Confidence 444445555555542 2356789999999999999999999876432 111000 00112233344
Q ss_pred HHcCCcEEEEEecCCCc--cChhh--hccccCC-C-CCCcEEEEeecC
Q 038510 218 LKKEKKILIILDDIWGG--LDLEA--IGIPLAD-D-NSGCKVLLTARS 259 (871)
Q Consensus 218 l~~~kr~LlvlDdv~~~--~~~~~--l~~~l~~-~-~~gs~iivTtr~ 259 (871)
+. +-=||||||+... ..|.. +...+.. . ..+-.+|+||.-
T Consensus 215 l~--~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 215 VK--EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hc--CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 43 4569999999644 45643 3332211 1 234457777754
No 235
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.064 Score=61.78 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=75.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cchhhHHHHHHHHHHcCCcEEEEEecCCCccCh--
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SHETVRAGRLLERLKKEKKILIILDDIWGGLDL-- 237 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~-- 237 (871)
..+.+-++|++|.|||.||+++++..+. .|-. ......+..+.....+..+..|++|++.....+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~--~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRS--RFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRG 352 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCC--eEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCC
Confidence 4568899999999999999999996554 3441 112233445555555568899999999654211
Q ss_pred -----------hhhccccCCCC--CCcEEEEeecCcchhcc--cc--CCcceeeccCCCHHHHHHHHHHHhCCC
Q 038510 238 -----------EAIGIPLADDN--SGCKVLLTARSQDVLSC--KM--DCQQNFFVDVLNEKEAWSLFRKMTGDC 294 (871)
Q Consensus 238 -----------~~l~~~l~~~~--~gs~iivTtr~~~va~~--~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~ 294 (871)
.++...+.... .+-.||-||-....... .. .-...+.+++-+.++..++|..+..+.
T Consensus 353 ~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 353 PSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred CCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 12222222122 22234445544433210 11 335688899999999999999998743
No 236
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.04 E-value=0.002 Score=63.88 Aligned_cols=247 Identities=17% Similarity=0.110 Sum_probs=143.3
Q ss_pred cccccCCcEEEecccCCCC--C----cccCCCCCccEEEeeCCCc----cccch-------hhcCCCCCCEEeCCCCCCC
Q 038510 539 LGLLQNLQTLCLNYCNLGD--I----AIIGDLKKLEILSLRGSDV----EKLVG-------EMGQLTQLRLLDLSKCFEL 601 (871)
Q Consensus 539 i~~l~~Lr~L~L~~~~i~~--~----~~i~~l~~L~~L~l~~~~i----~~lp~-------~i~~L~~L~~L~l~~~~~l 601 (871)
+..+..+..++|++|.|+. . ..|.+-.+|+..++++-.. .++|+ .+-++++|+..++++|..-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3456788899999999854 2 4577778899888876421 14443 3668899999999998655
Q ss_pred CccChh---hhhCCCCCcEEecccCCCCccccccccchhcccchhh------hccCCCCCeEEEeeccCCCCCcch----
Q 038510 602 KVIPPN---VISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHE------LNHLSKLTSLEILIQDEKTIPSDL---- 668 (871)
Q Consensus 602 ~~~p~~---~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~------L~~L~~L~~L~i~~~~~~~~~~~l---- 668 (871)
...|+. .|++-+.|.+|.+++|.+.... ....+..+.. ..+-+.|++..+..|.....+...
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~a-----G~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~ 180 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIA-----GGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL 180 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccc-----hhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH
Confidence 555543 3677889999999988753211 1112211222 234466777766666555544332
Q ss_pred -hhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhH-------HhhhcccceEEeeccCCceecccc--
Q 038510 669 -LFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGH-------IMQLKGIEDLSLHGLLDMKNVLCE-- 738 (871)
Q Consensus 669 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-------~~~l~~L~~L~L~~~~~~~~~~~~-- 738 (871)
.+-.+|+.+.+..+. --|.++ ...+++|+.|+|.++.........
T Consensus 181 l~sh~~lk~vki~qNg-------------------------Irpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 181 LESHENLKEVKIQQNG-------------------------IRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred HHhhcCceeEEeeecC-------------------------cCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 222356665554332 112221 234588899988876433221111
Q ss_pred CCCCCCCCccEEEeecCCCceeEe-ecCcccccCCcCCccceeeccccccc----cccccccCCccccCCCCeEEEecCC
Q 038510 739 PGREGFPQLKHLEVRDNRSLFCVV-DTVDCATALTAFPLLESLFLEDLGNL----EKICRGSLTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 739 ~~~~~l~~L~~L~L~~~~~l~~~~-~~~~~~~~~~~fp~L~~L~l~~~~~l----~~l~~~~~~~~~~~~L~~L~l~~C~ 813 (871)
..+...+.|+.|.+.+|- +..-. ....-.+....+|+|..|.+.+...- ..+.-..+..+++|-|..|.+.+.
T Consensus 236 ~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN- 313 (388)
T COG5238 236 DALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN- 313 (388)
T ss_pred HHhcccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-
Confidence 012445779999999983 11110 00011234456899999988774321 111112445678888888887753
Q ss_pred CCCc
Q 038510 814 KLKN 817 (871)
Q Consensus 814 ~L~~ 817 (871)
.++.
T Consensus 314 r~~E 317 (388)
T COG5238 314 RIKE 317 (388)
T ss_pred cchh
Confidence 3443
No 237
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.01 E-value=0.036 Score=65.42 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------chhhHHHHHHHHHHcCCcEEEEEecCCCcc------
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS-----------HETVRAGRLLERLKKEKKILIILDDIWGGL------ 235 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-----------~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------ 235 (871)
+-|.++|++|+|||++|+.+.+..... |-.. ........+........+++|++|+++...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~ 263 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 263 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--EEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCC
Confidence 348999999999999999999876542 3211 111223334444444577899999986531
Q ss_pred ------Chh----hhccccCC--CCCCcEEEEeecCcchhcc-c---cCCcceeeccCCCHHHHHHHHHHHhCCCCCCch
Q 038510 236 ------DLE----AIGIPLAD--DNSGCKVLLTARSQDVLSC-K---MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGE 299 (871)
Q Consensus 236 ------~~~----~l~~~l~~--~~~gs~iivTtr~~~va~~-~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~ 299 (871)
.++ .+...+.. ...+.-||.||...+.... . ..-+..+.++..+.++-.++++.+.......++
T Consensus 264 ~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~ 343 (644)
T PRK10733 264 LGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD 343 (644)
T ss_pred CCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc
Confidence 111 11111111 1233445557766554311 1 123567888888888888888877653321111
Q ss_pred hHHHHHHHHHHcCCc
Q 038510 300 LKSVATEIVKECAGL 314 (871)
Q Consensus 300 l~~~~~~I~~~c~Gl 314 (871)
. -...+++.+.|.
T Consensus 344 ~--d~~~la~~t~G~ 356 (644)
T PRK10733 344 I--DAAIIARGTPGF 356 (644)
T ss_pred C--CHHHHHhhCCCC
Confidence 1 123455666554
No 238
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.085 Score=52.72 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=84.3
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---------------------cc----ch----hhHHHHHHHHHH
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---------------------KS----HE----TVRAGRLLERLK 219 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------------------~~----~~----~~~~~~l~~~l~ 219 (871)
.++-+++.++|.-|.|||.++++........+.-. .. .. ....+.+.+-.+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 34557999999999999999995443222111111 00 00 111233444445
Q ss_pred cCCc-EEEEEecCCCc--cChhhhccc--cC-CCCCCcEEEEeecCc--------chhccccCCcceeeccCCCHHHHHH
Q 038510 220 KEKK-ILIILDDIWGG--LDLEAIGIP--LA-DDNSGCKVLLTARSQ--------DVLSCKMDCQQNFFVDVLNEKEAWS 285 (871)
Q Consensus 220 ~~kr-~LlvlDdv~~~--~~~~~l~~~--l~-~~~~gs~iivTtr~~--------~va~~~~~~~~~~~l~~L~~~~~~~ 285 (871)
+++| ..+++||.... +..+.++.. +. +...--+|+..-.-+ ..........-.|++.|++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 6777 99999998655 222222111 11 111111233211111 0001111222239999999998888
Q ss_pred HHHHHhCCCCCCch--hHHHHHHHHHHcCCchhHHHHHHH
Q 038510 286 LFRKMTGDCIENGE--LKSVATEIVKECAGLPIAIVPVAR 323 (871)
Q Consensus 286 Lf~~~~~~~~~~~~--l~~~~~~I~~~c~GlPLai~~~~~ 323 (871)
.++.+......++. -.+....|..+..|.|.+|..++.
T Consensus 208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88777653222211 245677899999999999987764
No 239
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.55 Score=51.02 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=82.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhccccc----ccchh---hHHHHHHHHHHcCCcEEEEEecCCCccC---------
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----KSHET---VRAGRLLERLKKEKKILIILDDIWGGLD--------- 236 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~~~---~~~~~l~~~l~~~kr~LlvlDdv~~~~~--------- 236 (871)
|=-.++|++|.|||+++.+++|... |+ ..+.. ....+++..- ..+-+||+.|++..-+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~ 309 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLDSDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKK 309 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCcHHHHHHHHhC--CCCcEEEEeeccccccccccccccc
Confidence 4567899999999999999999775 44 11112 2233333332 3567888888864411
Q ss_pred --hh---------hhccccC--CCCC-CcEEEE-eecCcchhc----cccCCcceeeccCCCHHHHHHHHHHHhCCCCCC
Q 038510 237 --LE---------AIGIPLA--DDNS-GCKVLL-TARSQDVLS----CKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIEN 297 (871)
Q Consensus 237 --~~---------~l~~~l~--~~~~-gs~iiv-Ttr~~~va~----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 297 (871)
.+ -+...+. +..+ +-|||| ||...+-.. ..-.-+..+.|.--+.+....||..+.+.+.++
T Consensus 310 ~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h 389 (457)
T KOG0743|consen 310 ENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDH 389 (457)
T ss_pred ccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCc
Confidence 11 0111111 2233 346555 665554331 111234568899999999999999998765433
Q ss_pred chhHHHHHHHHHHcCCchhHHHHHH-HHHhcC
Q 038510 298 GELKSVATEIVKECAGLPIAIVPVA-RALINK 328 (871)
Q Consensus 298 ~~l~~~~~~I~~~c~GlPLai~~~~-~~l~~~ 328 (871)
+- ..+|.+.-.|.-+.=..++ .+|.++
T Consensus 390 ~L----~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 390 RL----FDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred ch----hHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 33 3444444444444334444 344444
No 240
>PRK12377 putative replication protein; Provisional
Probab=95.97 E-value=0.016 Score=59.16 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
+...+.++|..|+|||+||.++++....+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34688999999999999999999987654
No 241
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.91 E-value=0.0013 Score=75.78 Aligned_cols=121 Identities=18% Similarity=0.228 Sum_probs=67.7
Q ss_pred hcccceEEeeccCCceeccccCCCCCCCCccEEEeecC-CCceeEeecCcccccCCcCCccceeeccccccccccccccC
Q 038510 718 LKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDN-RSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSL 796 (871)
Q Consensus 718 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~ 796 (871)
+++|+.|.+.+|....+.........+++|+.|.+.+| ...... ..........+++|+.|+++.+..+.+.--..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLS--PLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccc--hhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 46677777777666655221122356777777777763 221111 001111334457777777777665443311011
Q ss_pred CccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcch
Q 038510 797 TAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNM 841 (871)
Q Consensus 797 ~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l 841 (871)
...+|+|+.|.+.+|+.+++..-..+.+.+++|++|++++|..+
T Consensus 265 -~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 -ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred -HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 12367777777777777665544445567777777777777776
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.89 E-value=0.06 Score=55.75 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=84.3
Q ss_pred HHHHHHHHHhc---CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-------------------------------
Q 038510 158 STFKEILDALS---NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE------------------------------- 203 (871)
Q Consensus 158 ~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~------------------------------- 203 (871)
+.++++.+.+. ....+-+.|||.+|+|||++++.+....-.. ++
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~--~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ--SDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC--CCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 34555555555 3356789999999999999999999865432 22
Q ss_pred -----ccchhhHHHHHHHHHHcCCcEEEEEecCCCc-----cChhhhccc---cCCCCCCcEEEEeecCcchhcc----c
Q 038510 204 -----KSHETVRAGRLLERLKKEKKILIILDDIWGG-----LDLEAIGIP---LADDNSGCKVLLTARSQDVLSC----K 266 (871)
Q Consensus 204 -----~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~---l~~~~~gs~iivTtr~~~va~~----~ 266 (871)
.............-+..-+--+||+|++.+. .+-..+... +...-.=+-|.+-|+.-.-|-. .
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 0011111222333444445568999999764 111122222 2112223446666655322200 0
Q ss_pred cCCcceeeccCCC-HHHHHHHHHHHhC----CCCCCchhHHHHHHHHHHcCCchhHHH
Q 038510 267 MDCQQNFFVDVLN-EKEAWSLFRKMTG----DCIENGELKSVATEIVKECAGLPIAIV 319 (871)
Q Consensus 267 ~~~~~~~~l~~L~-~~~~~~Lf~~~~~----~~~~~~~l~~~~~~I~~~c~GlPLai~ 319 (871)
..--.++.++.-. ++|..+|+..... .....-...++++.|...++|+.--+.
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 0112344444433 3445555544322 222223446789999999999874433
No 243
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.85 E-value=0.067 Score=49.64 Aligned_cols=85 Identities=9% Similarity=0.091 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcchHHHHHHhH
Q 038510 33 FEKLNNEVDKLKNARDSMQCKVDDSRIKGDGIQQHVEEWLFAANKEINEVETIIEDKENSNNRCLKGLCPNLRARYQLSK 112 (871)
Q Consensus 33 ~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (871)
....+.-+++|...++.|...+++.+..+...+..-+.-++++.+...+++++++.+..-. .+++...++.++
T Consensus 29 ~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-------r~n~~kk~~y~~ 101 (147)
T PF05659_consen 29 SLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-------RWNLYKKPRYAR 101 (147)
T ss_pred HHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-------HHHHHhhHhHHH
Confidence 3344566777777888888888888776655555557788899999999999998876433 234555667788
Q ss_pred HHHHHHHHHHhh
Q 038510 113 KAEREANTIVGL 124 (871)
Q Consensus 113 ~i~~~~~~l~~i 124 (871)
+|+++.+.+...
T Consensus 102 Ki~~le~~l~~f 113 (147)
T PF05659_consen 102 KIEELEESLRRF 113 (147)
T ss_pred HHHHHHHHHHHH
Confidence 888877777554
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.84 E-value=0.11 Score=55.59 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhc---------------------cccc-----ccc------------hhhHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN---------------------NLFE-----KSH------------ETVRAGR 213 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~-----~~~------------~~~~~~~ 213 (871)
...+.++|+.|+||||+|+.+....--. .|-| ... ..+.+..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 4568899999999999999998764210 1111 110 1223344
Q ss_pred HHHHHH----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeeccCCCHHHHHHH
Q 038510 214 LLERLK----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSL 286 (871)
Q Consensus 214 l~~~l~----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l~~L~~~~~~~L 286 (871)
+.+.+. .+++-++|+|++...+ ..+.+...+.....+..+|++|.+. .+..........+.+.+++.+++.+.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~ 180 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAY 180 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHH
Confidence 444443 1344455667776542 2233333332222345566666664 44433344567899999999999887
Q ss_pred HHHHhCCCCCCchhHHHHHHHHHHcCCchhH
Q 038510 287 FRKMTGDCIENGELKSVATEIVKECAGLPIA 317 (871)
Q Consensus 287 f~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 317 (871)
+... + . ... . ..+..++|-|+.
T Consensus 181 L~~~-~--~-~~~--~---~~l~~~~g~p~~ 202 (325)
T PRK08699 181 LRER-G--V-AEP--E---ERLAFHSGAPLF 202 (325)
T ss_pred HHhc-C--C-CcH--H---HHHHHhCCChhh
Confidence 7654 1 1 111 1 123568899964
No 245
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.83 E-value=0.3 Score=49.27 Aligned_cols=190 Identities=16% Similarity=0.175 Sum_probs=107.6
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhh--------c-cccc-------------------
Q 038510 152 HFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKE--------N-NLFE------------------- 203 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------~-~~F~------------------- 203 (871)
.+.++++....+......++.+-..++|++|.||-|.+..+.+..-. + ..|-
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 45667777777777666678999999999999999977766654321 0 1222
Q ss_pred -ccch-----hhHHHHHHHHHH--------cCCcE-EEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCc-chhcc
Q 038510 204 -KSHE-----TVRAGRLLERLK--------KEKKI-LIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQ-DVLSC 265 (871)
Q Consensus 204 -~~~~-----~~~~~~l~~~l~--------~~kr~-LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~va~~ 265 (871)
..++ ...+..+..... .++.| ++|+-.++.. +.-..+....-.-...+|+|+...+. .+...
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIep 173 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEP 173 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhH
Confidence 1111 111222222221 23555 4445544433 22223333222223456766543331 11111
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHh--cC---------ChhHHH
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALI--NK---------RLFEWK 334 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~--~~---------~~~~w~ 334 (871)
....+-.+.+..-+++|-...+.+.+..+.-. --++++.+|+++++|.=--+..+--.++ +. ..-+|+
T Consensus 174 IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~-lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe 252 (351)
T KOG2035|consen 174 IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQ-LPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWE 252 (351)
T ss_pred HhhheeEEeCCCCCHHHHHHHHHHHHHHhccc-CcHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHH
Confidence 22334568888999999999998877533211 1167899999999887544444444443 11 456899
Q ss_pred HHHHHhcC
Q 038510 335 DSLLELRR 342 (871)
Q Consensus 335 ~~~~~l~~ 342 (871)
-++.+...
T Consensus 253 ~~i~e~a~ 260 (351)
T KOG2035|consen 253 IYIQEIAR 260 (351)
T ss_pred HHHHHHHH
Confidence 88877543
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.1 Score=58.13 Aligned_cols=140 Identities=19% Similarity=0.312 Sum_probs=86.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccc-----------hhhHHHHHHHHHHcCCcEEEEEecCCCc------
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSH-----------ETVRAGRLLERLKKEKKILIILDDIWGG------ 234 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-----------~~~~~~~l~~~l~~~kr~LlvlDdv~~~------ 234 (871)
..=|.+||++|+|||-||++|+|..... |-... .+..+..+.++.+..-++.|++|.++..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N--FisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~ 622 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN--FISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSD 622 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc--eEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCC
Confidence 4568899999999999999999988764 65111 1223445556666678999999998643
Q ss_pred -cC------hhhhccccCC--CCCCcEEEEeecCcchhccc----cCCcceeeccCCCHHHHHHHHHHHhCCCC----CC
Q 038510 235 -LD------LEAIGIPLAD--DNSGCKVLLTARSQDVLSCK----MDCQQNFFVDVLNEKEAWSLFRKMTGDCI----EN 297 (871)
Q Consensus 235 -~~------~~~l~~~l~~--~~~gs~iivTtr~~~va~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~----~~ 297 (871)
.. .+++..-+.. ...|--||-.|.-.++.... -.-+...-++.-+.+|=..+++..+.... .+
T Consensus 623 ~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~d 702 (802)
T KOG0733|consen 623 EGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSD 702 (802)
T ss_pred CCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcc
Confidence 11 2223222211 22344466666655553111 12245677788888999999988876322 22
Q ss_pred chhHHHHHHHHHHcCCch
Q 038510 298 GELKSVATEIVKECAGLP 315 (871)
Q Consensus 298 ~~l~~~~~~I~~~c~GlP 315 (871)
-.+.++++. .+|.|.-
T Consensus 703 Vdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 703 VDLDEIARN--TKCEGFT 718 (802)
T ss_pred cCHHHHhhc--ccccCCc
Confidence 345555443 3566664
No 247
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.77 E-value=0.028 Score=55.62 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=28.2
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 162 EILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 162 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
+.+..+..++-+++.|.|.+|.||||+++.+.......
T Consensus 8 ~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 8 EAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 33444433445789999999999999999988766654
No 248
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.76 E-value=0.087 Score=51.91 Aligned_cols=96 Identities=18% Similarity=0.249 Sum_probs=62.5
Q ss_pred ccccccchHHHHHHHHH----hcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccc-cc--ccchhhHHHHHHHHHHc-C
Q 038510 150 FMHFESRKSTFKEILDA----LSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNL-FE--KSHETVRAGRLLERLKK-E 221 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~--~~~~~~~~~~l~~~l~~-~ 221 (871)
...++|-+..++.+++- +..-...-|.+||.-|+|||+|++++.+....+.- .- ...+......+.+.|+. .
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp~l~~~Lr~~~ 138 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLPDLVELLRARP 138 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHHHHHHHHhcCC
Confidence 34567777766666553 33334557889999999999999999988765411 00 12223344566666652 5
Q ss_pred CcEEEEEecCCCc---cChhhhccccC
Q 038510 222 KKILIILDDIWGG---LDLEAIGIPLA 245 (871)
Q Consensus 222 kr~LlvlDdv~~~---~~~~~l~~~l~ 245 (871)
.||.|+.||..-+ ..+..++..+-
T Consensus 139 ~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 139 EKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 7899999998543 44666666654
No 249
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.75 E-value=0.017 Score=54.76 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
....+.++|++|.||||+.+.+|...+.
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC
Confidence 3568999999999999999999987764
No 250
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.72 E-value=0.0076 Score=56.03 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=57.6
Q ss_pred cchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc-ccccccchhhHHHHHHHHHHcCCcEEEEEecC
Q 038510 155 SRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKSHETVRAGRLLERLKKEKKILIILDDI 231 (871)
Q Consensus 155 gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~~~~~~~l~~~l~~~kr~LlvlDdv 231 (871)
|+-...+++.+.+. .....-|.|.|..|+||+++|+.++...... ..|....-.....++.+. -+.--++|+|+
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~---a~~gtL~l~~i 78 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQ---AKGGTLYLKNI 78 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHH---CTTSEEEEECG
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHH---cCCCEEEECCh
Confidence 44444555555444 2334567899999999999999999865542 234321111111222222 24566889999
Q ss_pred CCcc--ChhhhccccCC-CCCCcEEEEeecCc
Q 038510 232 WGGL--DLEAIGIPLAD-DNSGCKVLLTARSQ 260 (871)
Q Consensus 232 ~~~~--~~~~l~~~l~~-~~~gs~iivTtr~~ 260 (871)
.... ....+...+.. .....|+|.||...
T Consensus 79 ~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 79 DRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp CCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred HHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 7653 33334333332 25677999998864
No 251
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.33 Score=48.24 Aligned_cols=162 Identities=15% Similarity=0.212 Sum_probs=88.7
Q ss_pred ccccccCCccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccc--
Q 038510 142 TWLKSTQDFMHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSH-- 206 (871)
Q Consensus 142 ~~~~~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-- 206 (871)
+...+...+..+-|-+..++++++.+.- ...+-+..+|++|.|||-+|++.+..... .|-...
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--TFLKLAgP 239 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--TFLKLAGP 239 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--hHHHhcch
Confidence 3444555667788999999999988740 23456789999999999999998865443 354111
Q ss_pred ---------hhhHHHHHHHHHHcCCcEEEEEecCCCc-------c-----Chh----hhccccCC--CCCCcEEEEeecC
Q 038510 207 ---------ETVRAGRLLERLKKEKKILIILDDIWGG-------L-----DLE----AIGIPLAD--DNSGCKVLLTARS 259 (871)
Q Consensus 207 ---------~~~~~~~l~~~l~~~kr~LlvlDdv~~~-------~-----~~~----~l~~~l~~--~~~gs~iivTtr~ 259 (871)
....+.....-.++..+..|++|.+... + +.+ ++...+.. ....-+||..|..
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR 319 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR 319 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccc
Confidence 1122222333334567899999987532 0 011 12222222 2234567777766
Q ss_pred cchhc-ccc---CCcceeeccCCCHHHHHHHHHHHhC--CCCCCchhHHHHH
Q 038510 260 QDVLS-CKM---DCQQNFFVDVLNEKEAWSLFRKMTG--DCIENGELKSVAT 305 (871)
Q Consensus 260 ~~va~-~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~l~~~~~ 305 (871)
-++.. ..+ .-+..++.+.-+++.-.+++.-+.. ...++-.++++++
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 55541 111 2234556555454444455544443 2223334455443
No 252
>PRK06921 hypothetical protein; Provisional
Probab=95.64 E-value=0.015 Score=60.48 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
....+.++|..|+|||.||.++++....+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 45679999999999999999999976543
No 253
>PRK13695 putative NTPase; Provisional
Probab=95.60 E-value=0.054 Score=52.61 Aligned_cols=24 Identities=46% Similarity=0.672 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|+|+|.+|+|||||++.+++...
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999887654
No 254
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.59 E-value=0.017 Score=61.28 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=25.5
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+.+.++|++.|-||+||||+|..++.-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 567899999999999999999888765554
No 255
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.52 E-value=0.02 Score=64.31 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=41.4
Q ss_pred ccccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 150 FMHFESRKSTFKEILDALS------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+..++|.++.+++|++.+. ....+++.++|+.|+||||||+.+.+-.+.
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3457899999999999883 456689999999999999999999985553
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.48 E-value=0.02 Score=61.18 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
..-+.++|..|+|||.||.++++..-.+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3779999999999999999999987544
No 257
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.11 Score=59.28 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=58.1
Q ss_pred ccccccchHHHH---HHHHHhcCCC---------ceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---------ccchh
Q 038510 150 FMHFESRKSTFK---EILDALSNRD---------FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---------KSHET 208 (871)
Q Consensus 150 ~~~~~gr~~~~~---~l~~~l~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------~~~~~ 208 (871)
+.++.|.++.++ ++++.|.++. .+=+..+|++|.|||.||+++.....+...+- .....
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGA 228 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGA 228 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCc
Confidence 445667776555 5566666432 45688999999999999999999988852221 11223
Q ss_pred hHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 209 VRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 209 ~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.++..+..+-+++-++.+++|.++..
T Consensus 229 sRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 229 SRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred HHHHHHHHHhhccCCCeEEEehhhhc
Confidence 45556666666567899999998643
No 258
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.46 E-value=0.038 Score=67.40 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred cccccchHHHHHHHHHhc-------CCC--ceEEEEEcCCCCcHhHHHHHHHHHHhhc----cccc-----ccchh----
Q 038510 151 MHFESRKSTFKEILDALS-------NRD--FNMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFE-----KSHET---- 208 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~-------~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~-----~~~~~---- 208 (871)
..++|.+..++.+.+.+. +++ ..++.++|+.|+|||+||+.++...-.. -.|+ .....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 346788888888887765 122 3466789999999999999998754210 1122 00000
Q ss_pred ---------hHHHHHHHHHHcCCcEEEEEecCCCc--cChhhhcccc
Q 038510 209 ---------VRAGRLLERLKKEKKILIILDDIWGG--LDLEAIGIPL 244 (871)
Q Consensus 209 ---------~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~l 244 (871)
.....+.+.+.....-+++||++... +.++.+...+
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 01124556666544468889999754 3344444333
No 259
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.44 E-value=0.1 Score=54.11 Aligned_cols=142 Identities=21% Similarity=0.241 Sum_probs=85.1
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHh-hccccc----------------------
Q 038510 151 MHFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAK-ENNLFE---------------------- 203 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~---------------------- 203 (871)
..++|-.++..++-.|+. .++...+.|+|+.|.|||+|...+..+.+ ..++|-
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 346787788888887776 35566888999999999999888877732 223343
Q ss_pred ----------ccchhhHHHHHHHHHHc-----CCcEEEEEecCCCccC-------hhhhccccCCCCCCcEEEEeecCcc
Q 038510 204 ----------KSHETVRAGRLLERLKK-----EKKILIILDDIWGGLD-------LEAIGIPLADDNSGCKVLLTARSQD 261 (871)
Q Consensus 204 ----------~~~~~~~~~~l~~~l~~-----~kr~LlvlDdv~~~~~-------~~~l~~~l~~~~~gs~iivTtr~~~ 261 (871)
..+..+...++.+.|+. +-+..+|+|.++-... ++-+...-....+-+-|-+|||-.-
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 00112234556666643 2357888887754311 1111111112344556778999743
Q ss_pred hh------ccccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 262 VL------SCKMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 262 va------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
.. ........++-++.++-++..+++++...
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 21 12333344667778888888888887763
No 260
>PRK06547 hypothetical protein; Provisional
Probab=95.44 E-value=0.023 Score=54.77 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=28.0
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 163 ILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 163 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+...+......+|+|.|++|+||||+|+.+.....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33344456788999999999999999999987644
No 261
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.44 E-value=0.032 Score=66.43 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=55.3
Q ss_pred ccccchHHHHHHHHHhc-------C--CCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-ccc-----ccchh--------
Q 038510 152 HFESRKSTFKEILDALS-------N--RDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFE-----KSHET-------- 208 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~-----~~~~~-------- 208 (871)
.++|.++.++.+.+.+. + .....+.++|+.|+|||++|+.++......- .|+ .....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 36788888888877765 1 1245788999999999999999988764210 122 00000
Q ss_pred -----hHHHHHHHHHHcCCcEEEEEecCCCc--cChhhhc
Q 038510 209 -----VRAGRLLERLKKEKKILIILDDIWGG--LDLEAIG 241 (871)
Q Consensus 209 -----~~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~ 241 (871)
.....+.+.+.+...-+++||++... +.++.+.
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LL 578 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLL 578 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHH
Confidence 01123444455445569999999765 3344443
No 262
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.40 E-value=0.044 Score=67.09 Aligned_cols=93 Identities=16% Similarity=0.287 Sum_probs=57.5
Q ss_pred ccccchHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHhHHHHHHHHHHhhc-c---cccc-----cchhh----
Q 038510 152 HFESRKSTFKEILDALSN-------R--DFNMIGVYGMGGIGKTTLVKEVGRQAKEN-N---LFEK-----SHETV---- 209 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~---~F~~-----~~~~~---- 209 (871)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+....... . .|+. .....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g 645 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIG 645 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcC
Confidence 477888888888887752 1 24578899999999999999999765321 1 1220 00000
Q ss_pred ---------HHHHHHHHHHcCCcEEEEEecCCCc--cChhhhcccc
Q 038510 210 ---------RAGRLLERLKKEKKILIILDDIWGG--LDLEAIGIPL 244 (871)
Q Consensus 210 ---------~~~~l~~~l~~~kr~LlvlDdv~~~--~~~~~l~~~l 244 (871)
....+.+.+......+++||++... +.++.+...+
T Consensus 646 ~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 646 APPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred CCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 1123445555444458999999755 3455444433
No 263
>PRK07667 uridine kinase; Provisional
Probab=95.35 E-value=0.027 Score=55.73 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=28.5
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 161 KEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 161 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.+.+.+. .+...+|+|.|.+|+||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555554 34457999999999999999999987664
No 264
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.042 Score=52.24 Aligned_cols=25 Identities=36% Similarity=0.432 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999987
No 265
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.058 Score=53.53 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=55.4
Q ss_pred ccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccch---------
Q 038510 150 FMHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHE--------- 207 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~--------- 207 (871)
+.++-|..+.++++.+...- +..+-|..+|++|.|||-+|++|+|.... .|-....
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda--cfirvigselvqkyvg 253 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--CFIRVIGSELVQKYVG 253 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--eEEeehhHHHHHHHhh
Confidence 44566777778777765541 23567889999999999999999997654 4652211
Q ss_pred --hhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 208 --TVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 208 --~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
...+..+.+..+.+|-++|++|.+..
T Consensus 254 egarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 254 EGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred hhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11233444445566889999998853
No 266
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.066 Score=61.25 Aligned_cols=82 Identities=24% Similarity=0.306 Sum_probs=60.7
Q ss_pred cccccchHHHHHHHHHhc---------CC---CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------ccch
Q 038510 151 MHFESRKSTFKEILDALS---------NR---DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KSHE 207 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~~~ 207 (871)
+++-|-++.+.+|.+-+. .. +.+=|.++|++|.|||-+|++|+....-. |- ....
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~--FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLN--FLSVKGPELLNMYVGQS 749 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceee--EEeecCHHHHHHHhcch
Confidence 356688888888888664 12 24568899999999999999999876653 43 1123
Q ss_pred hhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 208 TVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 208 ~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
+..+.++.++.+..++|.|++|.+++.
T Consensus 750 E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 750 EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHHHHHhhccCCeEEEecccccc
Confidence 445667777777789999999999765
No 267
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.27 E-value=0.029 Score=57.20 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+...+|+|.|+.|.|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999876654
No 268
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.26 E-value=0.015 Score=53.08 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHhHHHHHHHHHH
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~ 196 (871)
|.|.|+.|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999884
No 269
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.26 E-value=0.38 Score=54.90 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=95.8
Q ss_pred ccccchHHHHHHHHHhc----C-CCceEEEEEcCCCCcHhHHHHHHHHHHhh------ccccc--------c--------
Q 038510 152 HFESRKSTFKEILDALS----N-RDFNMIGVYGMGGIGKTTLVKEVGRQAKE------NNLFE--------K-------- 204 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~--------~-------- 204 (871)
.+-+|+.+..+|..++. + +..+.+.|.|.+|+|||..+..|.+.... -..|+ .
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYE 476 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHH
Confidence 35588989888888775 3 44568999999999999999999986552 12355 0
Q ss_pred ----------cchhhHHHHHHHHHH----cCCcEEEEEecCCCccC--hhhhccccC-CCCCCcEEEEee-cCc-chhcc
Q 038510 205 ----------SHETVRAGRLLERLK----KEKKILIILDDIWGGLD--LEAIGIPLA-DDNSGCKVLLTA-RSQ-DVLSC 265 (871)
Q Consensus 205 ----------~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~~--~~~l~~~l~-~~~~gs~iivTt-r~~-~va~~ 265 (871)
.......+.+..++. +.+..++++|+++..-. -+-+...|. ...++||++|-+ -+. +....
T Consensus 477 ~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 477 KIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPER 556 (767)
T ss_pred HHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHH
Confidence 001111223333332 24678899999854421 222223332 355788855533 221 11100
Q ss_pred -------ccCCcceeeccCCCHHHHHHHHHHHhCCC--CCCchhHHHHHHHHHHcCCchhHHHHHHHHHh
Q 038510 266 -------KMDCQQNFFVDVLNEKEAWSLFRKMTGDC--IENGELKSVATEIVKECAGLPIAIVPVARALI 326 (871)
Q Consensus 266 -------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~ 326 (871)
..-+-..+...|-+.++-.++...+..+. ......+-++++|+.-.|..-.|+.+.-++..
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 00112345566666666666665554322 12233344556666666666566555555443
No 270
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.24 E-value=0.022 Score=59.93 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+|-||+||||+|..+..-...
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~ 27 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALST 27 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57888999999999999988876553
No 271
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0099 Score=35.29 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=15.1
Q ss_pred CccEEEeeCCCccccchhhcC
Q 038510 566 KLEILSLRGSDVEKLVGEMGQ 586 (871)
Q Consensus 566 ~L~~L~l~~~~i~~lp~~i~~ 586 (871)
+|++||+++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 477777777777777776554
No 272
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.22 E-value=0.017 Score=57.24 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
||+|.|.+|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999987763
No 273
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.19 E-value=0.026 Score=56.88 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|.|-||+||||++..++.....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~ 26 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAE 26 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHH
Confidence 47999999999999999888876554
No 274
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.079 Score=52.18 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=53.3
Q ss_pred ccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------ch
Q 038510 152 HFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS-----------HE 207 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-----------~~ 207 (871)
++-|-+-.++++.+... -+..+-|.++|++|.|||.||++|+++.... |-.. ..
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~--firvvgsefvqkylgeg 233 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA--FIRVVGSEFVQKYLGEG 233 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh--eeeeccHHHHHHHhccC
Confidence 45566666676666543 1345678899999999999999999986643 5411 11
Q ss_pred hhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 208 TVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 208 ~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
...+..+.+-.+++-+-.|++|.+...
T Consensus 234 prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 234 PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 122334444445567889999998643
No 275
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.17 E-value=0.05 Score=52.18 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
+.|-+.|.+|+||||+|+++....+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 567889999999999999998876543
No 276
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.13 E-value=0.0045 Score=59.13 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=52.9
Q ss_pred CCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHh
Q 038510 771 LTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEV 843 (871)
Q Consensus 771 ~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~ 843 (871)
...+++++.|.+.+|..+.+|+-.-+. +..|+|+.|+|+.||.+++- ....+..+++|+.|.+.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhhc
Confidence 445677888888888888877644333 36789999999999988876 335567888888888888776643
No 277
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.08 E-value=0.059 Score=65.76 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=35.3
Q ss_pred ccccchHHHHHHHHHhc-------CCC--ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 152 HFESRKSTFKEILDALS-------NRD--FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~~~--~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++|.+..++.+...+. +++ ..++.++|+.|+|||++|+.+++..
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46788888888877765 112 2478899999999999999998765
No 278
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.04 E-value=0.072 Score=54.39 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=28.9
Q ss_pred HHHHHHHHhcC--CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 159 TFKEILDALSN--RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 159 ~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.+..+.++... .....+.++|.+|+|||+||.++++....
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444432 22357899999999999999999998754
No 279
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.03 E-value=0.022 Score=57.18 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.+..+|+|.|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998754
No 280
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.03 E-value=0.028 Score=59.27 Aligned_cols=26 Identities=38% Similarity=0.728 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+.|+|+|-||+||||+|..++.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~ 26 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE 26 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH
Confidence 47899999999999999998876654
No 281
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.01 E-value=0.021 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+|.|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 282
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.98 E-value=0.023 Score=56.94 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+...+|+|+|++|+||||||+.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999987543
No 283
>PHA02244 ATPase-like protein
Probab=94.97 E-value=0.076 Score=56.81 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 160 FKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+..|+..+ . -|.++|+.|+|||++|++++.....
T Consensus 109 ~~ri~r~l~~~-~-PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 109 TADIAKIVNAN-I-PVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred HHHHHHHHhcC-C-CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34555555433 3 4677999999999999999987543
No 284
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.96 E-value=0.032 Score=58.91 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+|-||+||||+|..+......
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~ 27 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE 27 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999988876654
No 285
>PTZ00301 uridine kinase; Provisional
Probab=94.95 E-value=0.025 Score=56.38 Aligned_cols=26 Identities=27% Similarity=0.510 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999998886553
No 286
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.028 Score=54.44 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.|.|.|.+|.||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998543
No 287
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.91 E-value=0.048 Score=50.58 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
++|.|+|..|+|||||++.+.+....+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 589999999999999999999887653
No 288
>PRK08233 hypothetical protein; Provisional
Probab=94.85 E-value=0.025 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998754
No 289
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.16 Score=54.97 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=75.7
Q ss_pred cccchHHHHHHHHHhc-CCCceE-EEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc-----cc
Q 038510 153 FESRKSTFKEILDALS-NRDFNM-IGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE-----KS 205 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~-----~~ 205 (871)
+++-+....++..+.. .++.+. +-++|+.|+||||+|..+.+..-... |.+ ..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566677778888777 445665 99999999999999999998765221 222 11
Q ss_pred c------hhhHHHHHHHHHH----cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecC-cchhccccCCcce
Q 038510 206 H------ETVRAGRLLERLK----KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQN 272 (871)
Q Consensus 206 ~------~~~~~~~l~~~l~----~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~ 272 (871)
+ ....+..+.+... .++.-++++|+++... .-+.+...+.......++|++|.. ..+.......+..
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~ 162 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQR 162 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhccee
Confidence 1 1222333333332 1467899999997652 233444444444556677777764 3343323344556
Q ss_pred eeccCC
Q 038510 273 FFVDVL 278 (871)
Q Consensus 273 ~~l~~L 278 (871)
+++.+.
T Consensus 163 i~f~~~ 168 (325)
T COG0470 163 IRFKPP 168 (325)
T ss_pred eecCCc
Confidence 777663
No 290
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.13 Score=58.48 Aligned_cols=142 Identities=15% Similarity=0.052 Sum_probs=72.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhcc--ccc----ccchhhHHHHHHHHH-------HcCCcEEEEEecCCCc----
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENN--LFE----KSHETVRAGRLLERL-------KKEKKILIILDDIWGG---- 234 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~----~~~~~~~~~~l~~~l-------~~~kr~LlvlDdv~~~---- 234 (871)
.+-|.|.|..|+|||+||+++++...... ||. ........++++..+ ....+-+|||||+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s 510 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS 510 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC
Confidence 45788999999999999999999877322 122 111111122222222 2247889999998533
Q ss_pred ----cChhh----hcccc----C-CCCCCcE--EEEeecCcchhcc----ccCCcceeeccCCCHHHHHHHHHHHhCCCC
Q 038510 235 ----LDLEA----IGIPL----A-DDNSGCK--VLLTARSQDVLSC----KMDCQQNFFVDVLNEKEAWSLFRKMTGDCI 295 (871)
Q Consensus 235 ----~~~~~----l~~~l----~-~~~~gs~--iivTtr~~~va~~----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 295 (871)
.+|.. +...+ . ....+.+ +|.|.....-... ...-..++.+..++..+=-++++.......
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~ 590 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL 590 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh
Confidence 12221 11111 0 1233444 4444444322111 112234677888887776666655443211
Q ss_pred CCchhHHHHHHHHHHcCCc
Q 038510 296 ENGELKSVATEIVKECAGL 314 (871)
Q Consensus 296 ~~~~l~~~~~~I~~~c~Gl 314 (871)
. ........-+..+|+|.
T Consensus 591 ~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 591 S-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred h-hhhhHHHHHHHHhcCCc
Confidence 1 11112222377788775
No 291
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.79 E-value=0.14 Score=45.70 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=33.1
Q ss_pred ccccchHHHHHHHHHhc----C---CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 152 HFESRKSTFKEILDALS----N---RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++|..-..+.+++++. + ++.-|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35666666666666554 2 345689999999999999888888763
No 292
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=94.78 E-value=0.071 Score=54.93 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=25.5
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..-+.++|.|..|+|||||++++++..+.
T Consensus 67 g~GQr~~If~~~G~GKTtLa~~i~~~i~~ 95 (274)
T cd01133 67 AKGGKIGLFGGAGVGKTVLIMELINNIAK 95 (274)
T ss_pred ccCCEEEEecCCCCChhHHHHHHHHHHHh
Confidence 34578999999999999999999998774
No 293
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.77 E-value=0.035 Score=58.47 Aligned_cols=25 Identities=36% Similarity=0.670 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++|+|+|-||+||||+|..+..-..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La 27 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMA 27 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 6899999999999999998876554
No 294
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.74 E-value=0.028 Score=52.54 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986543
No 295
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.69 E-value=0.03 Score=55.06 Aligned_cols=28 Identities=39% Similarity=0.533 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.+.+|+|.|.+|+||||+|+.++.....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999987764
No 296
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.69 E-value=0.041 Score=57.79 Aligned_cols=26 Identities=35% Similarity=0.615 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|.|-||+||||++..++.....
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~ 28 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAK 28 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68899999999999999888876553
No 297
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.66 E-value=0.034 Score=55.50 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
+...|.++||+|.||||..|.++.+...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~ 46 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK 46 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc
Confidence 35578889999999999999999887764
No 298
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.66 E-value=0.12 Score=52.79 Aligned_cols=82 Identities=16% Similarity=0.209 Sum_probs=57.0
Q ss_pred cccchHHHHHHHHHhc----C---CCceEEEEEcCCCCcHhHHHHHHHHHHhhc-------------ccccccc-----h
Q 038510 153 FESRKSTFKEILDALS----N---RDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-------------NLFEKSH-----E 207 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------~~F~~~~-----~ 207 (871)
++|..-.++.+++.+. + .+.=+++.+|..|+||.-.++.++++.... .||.... .
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 5566666677777665 2 245699999999999999999998875432 2343222 2
Q ss_pred hhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 208 TVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 208 ~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.+....++..+..-+|-|+|+|+++..
T Consensus 164 ~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 164 EELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHhcCCceEEechhhhc
Confidence 234455666666678999999999765
No 299
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.66 E-value=0.074 Score=55.23 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999887554
No 300
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.65 E-value=0.053 Score=61.64 Aligned_cols=60 Identities=22% Similarity=0.449 Sum_probs=39.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc----ccchhhHH----HHHHHHHH-------cCCcEEEEEecCCCc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----KSHETVRA----GRLLERLK-------KEKKILIILDDIWGG 234 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~~~~~~----~~l~~~l~-------~~kr~LlvlDdv~~~ 234 (871)
.-++.-++|++|+||||||.-|+++.. |. ..++...+ .++...+. .+++..+|+|.++..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----YSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----ceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 357899999999999999999998764 33 11111111 22222221 257788999999765
No 301
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=94.65 E-value=0.041 Score=57.90 Aligned_cols=26 Identities=35% Similarity=0.613 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+|-||+||||+|..+..-...
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~ 27 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAE 27 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 58999999999999999888876554
No 302
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=94.64 E-value=0.046 Score=58.03 Aligned_cols=28 Identities=36% Similarity=0.548 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+.++|+|.|-||+||||.+..+......
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~ 30 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE 30 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 4578999999999999999887765543
No 303
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=94.62 E-value=0.13 Score=54.31 Aligned_cols=47 Identities=28% Similarity=0.524 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHHHhcCCC--c-eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 151 MHFESRKSTFKEILDALSNRD--F-NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~~~--~-~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+.+|+..+..+...+.+.. . ..|-|.|-+|.|||.+.+++.+...
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n 55 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN 55 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC
Confidence 346789999999999887443 2 3457899999999999999998874
No 304
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.62 E-value=0.13 Score=55.45 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=26.5
Q ss_pred HHHHHHHhcCC----CceEEEEEcCCCCcHhH-HHHHHHHHH
Q 038510 160 FKEILDALSNR----DFNMIGVYGMGGIGKTT-LVKEVGRQA 196 (871)
Q Consensus 160 ~~~l~~~l~~~----~~~vi~I~G~gGiGKTt-La~~v~~~~ 196 (871)
...+..++.++ +-++|++||+.|+|||| ||+..+.-.
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34444444433 47899999999999988 777776655
No 305
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.60 E-value=0.1 Score=51.58 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+||.++|+.|+||||.+-.++.....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~ 27 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKL 27 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhh
Confidence 68999999999999977766665543
No 306
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.048 Score=52.95 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
..+|+|-||=|+||||||+.+.++...+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4789999999999999999999998854
No 307
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.58 E-value=0.59 Score=51.67 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.++|..|+||||+|..++...+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~ 126 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQR 126 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999888875553
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.53 E-value=0.16 Score=52.73 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 162 EILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 162 ~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+..+++...+..+|.|+|..|.|||||+..+.+....
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455555678999999999999999999999887543
No 309
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.50 E-value=0.047 Score=57.35 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|.|-||+||||+|..++.....
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~ 27 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE 27 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh
Confidence 57888899999999999988876653
No 310
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.48 E-value=0.049 Score=57.89 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+++.+.|-||+||||+|-+.+-....
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~ 27 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR 27 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh
Confidence 68899999999999999888765554
No 311
>PRK06762 hypothetical protein; Provisional
Probab=94.45 E-value=0.037 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 312
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.42 E-value=0.037 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998654
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.39 E-value=0.054 Score=60.11 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc
Q 038510 152 HFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE 203 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (871)
.++||++.++.+...+..+ .-|.+.|++|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4789999999988877654 4678999999999999999998664333343
No 314
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.33 E-value=0.11 Score=53.80 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=60.6
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---ccc---------------------cc---------c
Q 038510 161 KEILDALS-NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFE---------------------KS---------H 206 (871)
Q Consensus 161 ~~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~---------------------~~---------~ 206 (871)
+.++..+. +++..-++|+|..|.|||||.+.+........ .|+ .. +
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~ 178 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLD 178 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccc
Confidence 33444443 44567899999999999999999986543210 111 00 0
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcch
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDV 262 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 262 (871)
.......+...+....+-++++|.+-..+.+..+...+ ..|..||+||....+
T Consensus 179 ~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 179 GCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred cchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 00112233444443467899999987766565554443 246779999987655
No 315
>PRK03839 putative kinase; Provisional
Probab=94.32 E-value=0.037 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.|.|+|++|+||||+|+.+++....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999987654
No 316
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.30 E-value=0.15 Score=51.57 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=56.5
Q ss_pred ccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------c
Q 038510 150 FMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------S 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~ 205 (871)
+.++-|-+..+++|.+... . ...+-|.++|.+|.|||-||++|+|..... |-. .
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRvvGseLiQkylG 261 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRVVGSELIQKYLG 261 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhhhhHHHHHHHhc
Confidence 4456678888888888764 1 234567789999999999999999987653 541 1
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
+....+.++.+.....-.-.+++|.+..
T Consensus 262 dGpklvRqlF~vA~e~apSIvFiDEIdA 289 (440)
T KOG0726|consen 262 DGPKLVRELFRVAEEHAPSIVFIDEIDA 289 (440)
T ss_pred cchHHHHHHHHHHHhcCCceEEeehhhh
Confidence 2223345555555556678888898753
No 317
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.29 E-value=0.098 Score=62.78 Aligned_cols=162 Identities=22% Similarity=0.223 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH-hhc-------------cccc----ccch-----------hhHHHHHHHHHHc-
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA-KEN-------------NLFE----KSHE-----------TVRAGRLLERLKK- 220 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~-------------~~F~----~~~~-----------~~~~~~l~~~l~~- 220 (871)
+.+++.|+|+.|.||||+.+.+.... -.+ ..|+ .... ......+...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~ 400 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKT 400 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhc
Confidence 45799999999999999999987551 110 1122 0000 0111122222221
Q ss_pred CCcEEEEEecCCCccCh---hhh----ccccCCCCCCcEEEEeecCcchhccccCCcc--eeeccCCCHHHHHHHHHHHh
Q 038510 221 EKKILIILDDIWGGLDL---EAI----GIPLADDNSGCKVLLTARSQDVLSCKMDCQQ--NFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 221 ~kr~LlvlDdv~~~~~~---~~l----~~~l~~~~~gs~iivTtr~~~va~~~~~~~~--~~~l~~L~~~~~~~Lf~~~~ 291 (871)
..+-|+++|..-...+. ..+ ...+ ...|+.+|+||...++......... ...+. ++. +... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 36799999998654321 122 2222 2357889999999876421111111 11111 111 1000 00011
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhc
Q 038510 292 GDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELR 341 (871)
Q Consensus 292 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~ 341 (871)
-...+. ...|-+|++++ |+|-.+.--|.-+.+....++..++.++.
T Consensus 476 ~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 LKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 011111 23577788877 89999888888887665556676666654
No 318
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.28 E-value=0.19 Score=45.81 Aligned_cols=114 Identities=16% Similarity=0.340 Sum_probs=40.3
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCC--CcccCCCCCccEE
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEIL 570 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L 570 (871)
.|++|+.+.+.. ....++...|.++..|+.+.+.++ +..++. .+.++..|+++.+.. .+.. ...+..+.+|+.+
T Consensus 10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 445555555543 334455555666666666666553 444432 344444555555543 2222 1233445555555
Q ss_pred EeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCC
Q 038510 571 SLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSR 614 (871)
Q Consensus 571 ~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~ 614 (871)
++..+ +..++.. +.+. +|+.+.+.. .+..++.+.+.++++
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTK 127 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCcccccccc
Confidence 55433 4444422 3333 555555443 233344443333333
No 319
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.25 E-value=0.061 Score=56.14 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---ccchhhHHHHHHHHHH--------------cCCc
Q 038510 161 KEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---KSHETVRAGRLLERLK--------------KEKK 223 (871)
Q Consensus 161 ~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~~~~~~~~l~~~l~--------------~~kr 223 (871)
..+++.+...+ +-+.++|+.|+|||++++............. .-+.......+++.+. .+|+
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~ 101 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKK 101 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSE
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcE
Confidence 45555555444 4568999999999999999876543322111 1111122233333221 2688
Q ss_pred EEEEEecCCCc
Q 038510 224 ILIILDDIWGG 234 (871)
Q Consensus 224 ~LlvlDdv~~~ 234 (871)
.++++||+.-.
T Consensus 102 lv~fiDDlN~p 112 (272)
T PF12775_consen 102 LVLFIDDLNMP 112 (272)
T ss_dssp EEEEEETTT-S
T ss_pred EEEEecccCCC
Confidence 89999998543
No 320
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.24 E-value=0.08 Score=49.52 Aligned_cols=89 Identities=22% Similarity=0.253 Sum_probs=51.5
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhc-c--ccc----------ccchhhHHHHHHHHHHcCCcEEEEEecCCCc---
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKEN-N--LFE----------KSHETVRAGRLLERLKKEKKILIILDDIWGG--- 234 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~--~F~----------~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--- 234 (871)
...+++|+|..|.|||||++.+....... . .++ -.......-.+...+.. ++-++++|+--..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~-~p~illlDEP~~~LD~ 103 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLE-NPNLLLLDEPTNHLDL 103 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhc-CCCEEEEeCCccCCCH
Confidence 34699999999999999999998754321 0 111 11112223334555554 6678999997433
Q ss_pred cChhhhccccCCCCCCcEEEEeecCcch
Q 038510 235 LDLEAIGIPLADDNSGCKVLLTARSQDV 262 (871)
Q Consensus 235 ~~~~~l~~~l~~~~~gs~iivTtr~~~v 262 (871)
...+.+...+... +..||++|.+.+.
T Consensus 104 ~~~~~l~~~l~~~--~~til~~th~~~~ 129 (144)
T cd03221 104 ESIEALEEALKEY--PGTVILVSHDRYF 129 (144)
T ss_pred HHHHHHHHHHHHc--CCEEEEEECCHHH
Confidence 2222332222222 2358888877554
No 321
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.85 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|+|+|.+|+||||++..+.....
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988876543
No 322
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=94.20 E-value=0.061 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+|-||+||||+|..+..-...
T Consensus 1 ~vIav~gKGGvGKTT~a~nLA~~La~ 26 (296)
T TIGR02016 1 RIIAIYGKGGSGKSFTTTNLSHMMAE 26 (296)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999988875554
No 323
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=94.20 E-value=0.06 Score=56.49 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+|++.|-||+||||+|..++.....
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~ 26 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAK 26 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHh
Confidence 5788899999999999888765543
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.18 E-value=0.74 Score=51.30 Aligned_cols=28 Identities=32% Similarity=0.394 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.++|..|+||||.|..++.....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999876654
No 325
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.15 E-value=0.15 Score=54.78 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=30.1
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 160 FKEILDALSN-RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 160 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..++++.+.. +..+.+.|+|..|+|||||++.+.+....
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4457776662 34567899999999999999998886543
No 326
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.12 E-value=0.065 Score=56.08 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999998776544
No 327
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=94.12 E-value=0.064 Score=56.21 Aligned_cols=25 Identities=36% Similarity=0.675 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+|+|.|-||+||||+|..+......
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~ 26 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAK 26 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999988876654
No 328
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.11 E-value=0.04 Score=48.53 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=34.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhhcccccccch---hhHHHHHHHHHHcCCcEEEEEecCCCcc
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHE---TVRAGRLLERLKKEKKILIILDDIWGGL 235 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~---~~~~~~l~~~l~~~kr~LlvlDdv~~~~ 235 (871)
|-|+|.+|+|||++|+.++.+....-....... .....+...-.. ++ -.+|+||++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~-~q-~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ-GQ-PVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC-CC-cEEEEeecCccc
Confidence 468999999999999998887654211110000 111222333333 34 568889987653
No 329
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.11 Score=53.53 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=25.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
.++|.++|++|.|||+|.++++....++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 5899999999999999999999988765
No 330
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.04 E-value=1.3 Score=47.76 Aligned_cols=42 Identities=29% Similarity=0.480 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcC---CCceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 158 STFKEILDALSN---RDFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 158 ~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
.-.+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+..+..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345566666663 467899999999999999999998877665
No 331
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.02 E-value=0.059 Score=51.55 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999877654
No 332
>PRK04040 adenylate kinase; Provisional
Probab=93.99 E-value=0.05 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.+|.|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 333
>PRK00625 shikimate kinase; Provisional
Probab=93.97 E-value=0.046 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988754
No 334
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.94 E-value=0.039 Score=54.89 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887643
No 335
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=1.2 Score=44.08 Aligned_cols=183 Identities=14% Similarity=0.183 Sum_probs=97.0
Q ss_pred cchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccchhhHH----------
Q 038510 155 SRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHETVRA---------- 211 (871)
Q Consensus 155 gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~---------- 211 (871)
|-+..+++|.+.+. =.+.+-+.++|++|.|||-||++|+++..-. |-..+..+.+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~--firvsgselvqk~igegsrm 228 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCT--FIRVSGSELVQKYIGEGSRM 228 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceE--EEEechHHHHHHHhhhhHHH
Confidence 45666666666554 1345678899999999999999999877653 5533332221
Q ss_pred -HHHHHHHHcCCcEEEEEecCCCcc------------Chh----hhccccCC--CCCCcEEEEeecCcchhc-c---ccC
Q 038510 212 -GRLLERLKKEKKILIILDDIWGGL------------DLE----AIGIPLAD--DNSGCKVLLTARSQDVLS-C---KMD 268 (871)
Q Consensus 212 -~~l~~~l~~~kr~LlvlDdv~~~~------------~~~----~l~~~l~~--~~~gs~iivTtr~~~va~-~---~~~ 268 (871)
..+.-...+.-+-.|++|.+++.- +.+ ++...+.. ..+.-+||..|..-++.. . .-.
T Consensus 229 vrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgr 308 (404)
T KOG0728|consen 229 VRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGR 308 (404)
T ss_pred HHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCc
Confidence 222222234567889999986540 111 11122211 223456777665544431 1 123
Q ss_pred CcceeeccCCCHHHHHHHHHHHhC--CCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH--hcC----ChhHHHHHHHH
Q 038510 269 CQQNFFVDVLNEKEAWSLFRKMTG--DCIENGELKSVATEIVKECAGLPIAIVPVARAL--INK----RLFEWKDSLLE 339 (871)
Q Consensus 269 ~~~~~~l~~L~~~~~~~Lf~~~~~--~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l--~~~----~~~~w~~~~~~ 339 (871)
-+..++.++-+++.-.++++-+.. +-...-+++.+|+++-...|.--.++-+=|++. +++ +.++++-+..+
T Consensus 309 idrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 309 IDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred ccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 345788888887777777765543 111223444444443332222222333334433 333 55666655544
No 336
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.15 Score=54.97 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.++|+++|++|+||||++..++....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999886544
No 337
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.92 E-value=0.62 Score=59.50 Aligned_cols=27 Identities=30% Similarity=0.245 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.+-|.++|++|+|||.||++++.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 457889999999999999999988654
No 338
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.92 E-value=0.074 Score=49.85 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
..||-|.|.+|.||||||+++.......
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3588899999999999999999877653
No 339
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.91 E-value=0.087 Score=56.55 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=39.2
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+..++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999999888777777777778899999999999999997554
No 340
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.90 E-value=1.8 Score=46.18 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=33.4
Q ss_pred eeeccCCCHHHHHHHHHHHhCCCCCC--chhHHHHHHHHHHcCCchhH
Q 038510 272 NFFVDVLNEKEAWSLFRKMTGDCIEN--GELKSVATEIVKECAGLPIA 317 (871)
Q Consensus 272 ~~~l~~L~~~~~~~Lf~~~~~~~~~~--~~l~~~~~~I~~~c~GlPLa 317 (871)
++++++++.+|+..++..+....... ...+...+++.--.+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999998877532221 33345666777777999853
No 341
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.90 E-value=0.043 Score=53.47 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998653
No 342
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.88 E-value=0.1 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.|+|+|-||+||||+|..+....
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 68999999999999998855433
No 343
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.88 E-value=0.23 Score=55.35 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+++.++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36999999999999998888766554
No 344
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.87 E-value=0.05 Score=50.19 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+|.|.|++|+||||+|+.+.++..-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6899999999999999999987653
No 345
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.86 E-value=0.15 Score=56.51 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=33.8
Q ss_pred ccccchHHHHHHHHHhc-------CC---------CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 152 HFESRKSTFKEILDALS-------NR---------DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++|.+..++.+...+. .. ..+.+.++|+.|+|||++|+.++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 36788888777644431 10 135689999999999999999987654
No 346
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.85 E-value=0.075 Score=57.07 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=42.0
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++..++|.++.+..|+..+.++.+.-|.|.|..|+||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566889999999998888888888888999999999999999987654
No 347
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.83 E-value=0.046 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999987654
No 348
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.81 E-value=0.15 Score=50.63 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
++++|+|+.|.|||||.+.+.-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999987544
No 349
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.81 E-value=0.051 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++.|+|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987653
No 350
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.80 E-value=0.065 Score=52.16 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.++|+.|+||||+|+.+++....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987753
No 351
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.73 E-value=0.17 Score=52.81 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=43.2
Q ss_pred ccccccchHHHH---HHHHHhcCC--CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc
Q 038510 150 FMHFESRKSTFK---EILDALSNR--DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE 203 (871)
Q Consensus 150 ~~~~~gr~~~~~---~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (871)
..+++|..+..+ -+++++.++ ..+.|.|+|++|.|||+||-.+.+.....-.|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 356888766554 366766654 358999999999999999999999998777887
No 352
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.68 E-value=0.025 Score=33.54 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=13.0
Q ss_pred cceEEEecCCCCCCCCCcccc
Q 038510 521 GLKVLDFTEMHLLPLPSSLGL 541 (871)
Q Consensus 521 ~Lr~L~l~~~~i~~lp~~i~~ 541 (871)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356667777666666665543
No 353
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.62 E-value=0.083 Score=51.34 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999987643
No 354
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.60 E-value=0.068 Score=51.84 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...|.++|++|+||||+|+.++.....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999987643
No 355
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.55 E-value=0.11 Score=55.95 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=35.5
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 151 MHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..++|+.....++.+.+. .....-|.|+|..|+||+++|+.++....
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~ 54 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC
Confidence 347788877777777665 23335678999999999999999986543
No 356
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.54 E-value=0.096 Score=56.43 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh-hccccc
Q 038510 154 ESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK-ENNLFE 203 (871)
Q Consensus 154 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~ 203 (871)
+|+...+.++.+.+. .....-|.|+|..|+||+++|+.+++... ....|-
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv 54 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLV 54 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeE
Confidence 455555555555544 22334578999999999999999987654 233454
No 357
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.53 E-value=0.11 Score=60.32 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=40.1
Q ss_pred ccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh-hccccc
Q 038510 150 FMHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK-ENNLFE 203 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~ 203 (871)
...++|....+.++.+.+. .....-|.|+|..|+|||++|+.+++... ....|-
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv 251 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFV 251 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeE
Confidence 4568899888888877765 23334567999999999999999998654 233454
No 358
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.49 E-value=0.063 Score=52.28 Aligned_cols=24 Identities=38% Similarity=0.689 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987654
No 359
>PRK06217 hypothetical protein; Validated
Probab=93.48 E-value=0.061 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.|.|.|.+|+||||+|+.+......
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5899999999999999999987653
No 360
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.47 E-value=0.094 Score=55.44 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|+|.|-||+||||+|..+......
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~ 26 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALAR 26 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH
Confidence 889999999999999988876654
No 361
>PRK13768 GTPase; Provisional
Probab=93.47 E-value=0.11 Score=53.79 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..++.|.|+||+||||++..+......
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHh
Confidence 357899999999999999888865543
No 362
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.15 Score=52.19 Aligned_cols=60 Identities=23% Similarity=0.281 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------chhhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS-----------HETVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-----------~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
...++|||+.|.|||-+|+.|+....+. |-.. .....+.+..+......++.|.+||++.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~n--fl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVN--FLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDA 236 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCc--eEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhh
Confidence 4678999999999999999999887764 4311 1112234444444555679999999854
No 363
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=0.56 Score=49.55 Aligned_cols=82 Identities=22% Similarity=0.239 Sum_probs=49.8
Q ss_pred cccccchHHHHHHHHHhc--------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccch-------hh
Q 038510 151 MHFESRKSTFKEILDALS--------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHE-------TV 209 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~--------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~-------~~ 209 (871)
..+.|-+..++.+.+... -...+-|-.+|++|.|||-||++++...... |-.... -+
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~--fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN--FINVSVSNLTSKWFG 169 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC--cceeeccccchhhHH
Confidence 344566666666655432 1235678899999999999999999887653 551110 01
Q ss_pred HHHHHHHH----HHcCCcEEEEEecCCCc
Q 038510 210 RAGRLLER----LKKEKKILIILDDIWGG 234 (871)
Q Consensus 210 ~~~~l~~~----l~~~kr~LlvlDdv~~~ 234 (871)
...++... -.+=++..|.+|.|.+.
T Consensus 170 E~eKlv~AvFslAsKl~P~iIFIDEvds~ 198 (386)
T KOG0737|consen 170 EAQKLVKAVFSLASKLQPSIIFIDEVDSF 198 (386)
T ss_pred HHHHHHHHHHhhhhhcCcceeehhhHHHH
Confidence 11222221 12336789999998643
No 364
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.42 E-value=0.14 Score=51.66 Aligned_cols=41 Identities=32% Similarity=0.514 Sum_probs=29.7
Q ss_pred HHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 159 TFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 159 ~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
...++++.+. .++..+|+|.|++|+|||||.-.+....+.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 3445555554 4567899999999999999999988776643
No 365
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.51 Score=53.80 Aligned_cols=60 Identities=23% Similarity=0.327 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cchhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SHETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.-|.++|++|.|||-||.+++.....+ |-. ...++.+..+.++.+.-++|.+++|..++.
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~--fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR--FISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee--EEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEecccccc
Confidence 457899999999999999999876543 431 122344566667777679999999998654
No 366
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.40 E-value=0.19 Score=53.31 Aligned_cols=70 Identities=20% Similarity=0.258 Sum_probs=46.9
Q ss_pred ccccccchHHHHH---HHHHhcCCC--ceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-------cchhhHHHHHHHH
Q 038510 150 FMHFESRKSTFKE---ILDALSNRD--FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-------SHETVRAGRLLER 217 (871)
Q Consensus 150 ~~~~~gr~~~~~~---l~~~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-------~~~~~~~~~l~~~ 217 (871)
..+++|..+..+. +++++.+++ .+.|.+.|++|.|||+||..+......+-.|-. ..+....+.+.+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE~L~qa 102 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTEALTQA 102 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchHHHHHH
Confidence 3578888765543 566666554 689999999999999999999999887666761 2233445666677
Q ss_pred HH
Q 038510 218 LK 219 (871)
Q Consensus 218 l~ 219 (871)
++
T Consensus 103 ~R 104 (398)
T PF06068_consen 103 FR 104 (398)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 367
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.38 E-value=0.18 Score=50.06 Aligned_cols=86 Identities=16% Similarity=0.192 Sum_probs=49.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc--cc-c--c--------------cc-----chhhHHHHHHHHHHcCCcEEEEE
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN--NL-F--E--------------KS-----HETVRAGRLLERLKKEKKILIIL 228 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~-F--~--------------~~-----~~~~~~~~l~~~l~~~kr~Llvl 228 (871)
.+|.|+|+.|.||||++..+....... .+ + . .. ....-.+.+...+.. ..=.+++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~-~pd~ii~ 80 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ-DPDVILV 80 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC-CcCEEEE
Confidence 478999999999999999876654321 11 0 0 00 001112233444443 4568999
Q ss_pred ecCCCccChhhhccccCCCCCCcEEEEeecCcch
Q 038510 229 DDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDV 262 (871)
Q Consensus 229 Ddv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 262 (871)
|++.+.+........ ...|-.|+.|+....+
T Consensus 81 gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 81 GEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 999776554433222 2234557777765544
No 368
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.37 E-value=0.25 Score=52.70 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
-+.|+|||+.|+||+||.+.+...
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 368999999999999999988643
No 369
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.35 E-value=0.076 Score=51.61 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998764
No 370
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.33 E-value=0.37 Score=48.41 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh--hccc-----------cc-------c-c-------chhhHHHHHHHHHH-cCC
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK--ENNL-----------FE-------K-S-------HETVRAGRLLERLK-KEK 222 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~-----------F~-------~-~-------~~~~~~~~l~~~l~-~~k 222 (871)
.+++.|+|+.|.||||+.+.+..... .... |+ . . .......++...+. ..+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 48999999999999999999874321 1111 21 0 0 00111222222221 247
Q ss_pred cEEEEEecCCCccCh---h----hhccccCCC-CCCcEEEEeecCcchh
Q 038510 223 KILIILDDIWGGLDL---E----AIGIPLADD-NSGCKVLLTARSQDVL 263 (871)
Q Consensus 223 r~LlvlDdv~~~~~~---~----~l~~~l~~~-~~gs~iivTtr~~~va 263 (871)
+-|+++|+.-.-.+. . .+...+... ..+..+|+||...+.+
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 899999998654221 1 122223222 2345799999998775
No 371
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.32 E-value=0.061 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
||.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999987654
No 372
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.31 E-value=0.13 Score=52.00 Aligned_cols=26 Identities=38% Similarity=0.689 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+.|+|+|-|||||||.+..+.-....
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~ 26 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAE 26 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHh
Confidence 46999999999999999988765554
No 373
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.25 E-value=0.16 Score=46.28 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+|.+.|.-|.||||+++.+......
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999987554
No 374
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.24 E-value=0.071 Score=49.52 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
|.++|..|+|||+||+.++....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67899999999999999998774
No 375
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.24 E-value=0.067 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+|.|+|..|+||||+|+.+......
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~ 25 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGL 25 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999986543
No 376
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.23 E-value=0.14 Score=53.35 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+.++|.++|++|+||||++..++....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3468999999999999999988886554
No 377
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.22 E-value=0.069 Score=52.98 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+++|+|.+|+|||||++.+.--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 356999999999999999999985443
No 378
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.22 E-value=0.064 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
++|+|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999874
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.21 E-value=0.13 Score=48.50 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 159 TFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++++.+++.. +++.++|.+|+|||||+..+..+.
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35677777654 799999999999999999998754
No 380
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.19 E-value=0.15 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+++.+.|.||+||||+|-+..-...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA 27 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA 27 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH
Confidence 47899999999999999988654443
No 381
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.13 E-value=0.11 Score=52.14 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=26.4
Q ss_pred hcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 167 LSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 167 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+...++++|+++|..|+|||||..++.....
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457899999999999999999999887643
No 382
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.13 E-value=0.081 Score=52.94 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999999864
No 383
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.13 E-value=0.068 Score=50.41 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
++.++|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46899999999999999998764
No 384
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.12 E-value=0.21 Score=50.96 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCcchHHHH
Q 038510 30 KTNFEKLNNEVDKLKNARDSMQCKVDDSRIK-GDGIQQHVEEWLFAANKEINEVETIIEDKENSNNRCLKGLCPNLRARY 108 (871)
Q Consensus 30 ~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~-~~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~~ 108 (871)
.+.+.-++.+++-++.+++.+|.||+...+. ....+ .......++.+.||++|.++|..-...... ++ ...+-.
T Consensus 313 sdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~-~~ed~a~~ii~kAyevEYVVDaCi~k~~P~---Wc-l~~WL~ 387 (402)
T PF12061_consen 313 SDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHD-TNEDCATQIIRKAYEVEYVVDACISKSVPH---WC-LERWLL 387 (402)
T ss_pred cchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhh-hhhhHHHHHHHHHhheeeeeehhhcCCCcH---HH-HHHHHH
Confidence 3447789999999999999999999887444 44434 489999999999999999998753322100 00 122334
Q ss_pred HHhHHHHHHHHHHH
Q 038510 109 QLSKKAEREANTIV 122 (871)
Q Consensus 109 ~~~~~i~~~~~~l~ 122 (871)
.+..+|..+++++.
T Consensus 388 dIieei~~ik~~i~ 401 (402)
T PF12061_consen 388 DIIEEITCIKAKIQ 401 (402)
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666666553
No 385
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.10 E-value=0.22 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..++.++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 386
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.05 E-value=0.072 Score=49.93 Aligned_cols=20 Identities=40% Similarity=0.674 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHhHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVG 193 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~ 193 (871)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 387
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.00 E-value=0.098 Score=45.49 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=20.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVG 193 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~ 193 (871)
...++|+|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999976
No 388
>PRK13949 shikimate kinase; Provisional
Probab=92.98 E-value=0.084 Score=50.86 Aligned_cols=26 Identities=38% Similarity=0.367 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+.|.|+|+.|+||||+++.++.....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999987653
No 389
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.97 E-value=0.13 Score=55.16 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=38.2
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.+...++|.++.++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456688999988887755544445668999999999999999997653
No 390
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.96 E-value=0.098 Score=49.27 Aligned_cols=28 Identities=32% Similarity=0.614 Sum_probs=24.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
.+|++|+|+.|+|||||...+....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 4799999999999999999998877764
No 391
>PRK13947 shikimate kinase; Provisional
Probab=92.96 E-value=0.084 Score=51.05 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
-|.|+|++|+||||+|+.+.+....
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999987654
No 392
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=92.91 E-value=0.22 Score=50.96 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...++.|+|.+|+|||++|.+++-.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999754
No 393
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=92.90 E-value=0.17 Score=45.14 Aligned_cols=24 Identities=42% Similarity=0.681 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|.+.|.||+||||++..++.....
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~ 25 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE 25 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999876653
No 394
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.87 E-value=0.075 Score=49.16 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998753
No 395
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.85 E-value=0.47 Score=44.70 Aligned_cols=89 Identities=26% Similarity=0.256 Sum_probs=53.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc---c---cc------------------------------ccchhh-------
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN---L---FE------------------------------KSHETV------- 209 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~---F~------------------------------~~~~~~------- 209 (871)
..|-|++-.|.||||+|....-..-... . |- ......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 4677888889999999988766543221 0 11 011111
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCc-----cChhhhccccCCCCCCcEEEEeecCcc
Q 038510 210 RAGRLLERLKKEKKILIILDDIWGG-----LDLEAIGIPLADDNSGCKVLLTARSQD 261 (871)
Q Consensus 210 ~~~~l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 261 (871)
......+.+..++-=|+|||++-.. .+.+.+...+.....+.-||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1222334444455569999998543 344555555544455667999999953
No 396
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=92.82 E-value=0.31 Score=51.75 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.-+++-|+|++|+||||||.++.....
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998776554
No 397
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.81 E-value=0.072 Score=29.28 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=7.0
Q ss_pred CccEEEeeCCCccccc
Q 038510 566 KLEILSLRGSDVEKLV 581 (871)
Q Consensus 566 ~L~~L~l~~~~i~~lp 581 (871)
+|++|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4556666666555554
No 398
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.81 E-value=0.096 Score=46.97 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|.|+|..|+|||||.+.+......
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999875543
No 399
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.80 E-value=1.5 Score=48.76 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=31.4
Q ss_pred HHHHHHHHhc-----CC--CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 159 TFKEILDALS-----NR--DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 159 ~~~~l~~~l~-----~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++++..||. .+ +.+++.|.|++|+||||.++.++.....
T Consensus 90 KI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~ 136 (634)
T KOG1970|consen 90 KISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGY 136 (634)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence 4567777776 33 3569999999999999999999876554
No 400
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.79 E-value=0.099 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
|++|+|+.|+||||++..+....+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999876643
No 401
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.74 E-value=0.068 Score=47.81 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|-++|.+|+||||+|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 678999999999999999987654
No 402
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.72 E-value=0.37 Score=43.85 Aligned_cols=106 Identities=18% Similarity=0.327 Sum_probs=60.4
Q ss_pred cCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCCC--cccCCCCCccEEEeeCCCccccchh-hcC
Q 038510 511 IPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGDI--AIIGDLKKLEILSLRGSDVEKLVGE-MGQ 586 (871)
Q Consensus 511 ~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~lp~~-i~~ 586 (871)
++...|.++..|+.+.+.. .+..++ ..+.++.+|+.+.+..+ +..+ ..+..+.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4566788888999999875 455554 35677778888888774 5553 4467777888888865 55556543 556
Q ss_pred CCCCCEEeCCCCCCCCccChhhhhCCCCCcEEeccc
Q 038510 587 LTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622 (871)
Q Consensus 587 L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 622 (871)
+++|+.+.+.. .+..++...+.+. +|+.+.+..
T Consensus 80 ~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence 88888888865 3556666666666 777777654
No 403
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.70 E-value=0.087 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997543
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.69 E-value=0.18 Score=53.84 Aligned_cols=28 Identities=32% Similarity=0.447 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+++++|++|+||||++..++.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999999999876553
No 405
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=92.68 E-value=2.1 Score=45.23 Aligned_cols=154 Identities=13% Similarity=0.058 Sum_probs=90.5
Q ss_pred HHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHH--------hhccc------cc--cc-chhhHHHHHHHHHH--
Q 038510 160 FKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQA--------KENNL------FE--KS-HETVRAGRLLERLK-- 219 (871)
Q Consensus 160 ~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~------F~--~~-~~~~~~~~l~~~l~-- 219 (871)
++.+.+.+..++. .+.-++|..|.||+++|..+.+.. ....| |+ .. .....+..+.+.+.
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~ 84 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFS 84 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccC
Confidence 3445555555554 556699999999999999998876 11111 22 11 11223444444442
Q ss_pred ---cCCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecC-cchhccccCCcceeeccCCCHHHHHHHHHHHhCC
Q 038510 220 ---KEKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARS-QDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGD 293 (871)
Q Consensus 220 ---~~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~-~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 293 (871)
.+.+-++|+|++.... ..+.+...+-.-..++.+|++|.+ ..+.......+..+++.++++++..+.+... +
T Consensus 85 ~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-~- 162 (299)
T PRK07132 85 SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-N- 162 (299)
T ss_pred CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-C-
Confidence 1477889999986542 345555555444556666655544 4443323455788999999999988777654 1
Q ss_pred CCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 294 CIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 294 ~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
. + ++.++.++...+|.=-|+..
T Consensus 163 -~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 163 -K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 1 1 23355666666663234443
No 406
>PRK14530 adenylate kinase; Provisional
Probab=92.68 E-value=0.1 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987654
No 407
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.65 E-value=0.5 Score=46.43 Aligned_cols=97 Identities=24% Similarity=0.351 Sum_probs=60.6
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc-cccc--------cc----------------------chhhHH
Q 038510 163 ILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFE--------KS----------------------HETVRA 211 (871)
Q Consensus 163 l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~--------~~----------------------~~~~~~ 211 (871)
++..+-+....-..|.|++|+|||||.+.+++-.... +.|- .. +.....
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~ 207 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKA 207 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHH
Confidence 4444444555557899999999999999998766543 2232 00 001122
Q ss_pred HHHHHHHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcch
Q 038510 212 GRLLERLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDV 262 (871)
Q Consensus 212 ~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 262 (871)
.-+...+....+=.+|+|.+-..++-..+..++ ..|-+++.|..-..+
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~i 255 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGI 255 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccH
Confidence 334444555567899999998887666554443 467777777654433
No 408
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.65 E-value=0.11 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...|.|+|+.|.||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 35699999999999999999998754
No 409
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.64 E-value=0.095 Score=52.44 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
....+|+|+|++|+|||||.+.++--
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34569999999999999999998853
No 410
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.63 E-value=0.1 Score=49.35 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|.++|++|.||||+|+.+......
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 689999999999999999876543
No 411
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.59 E-value=0.18 Score=51.64 Aligned_cols=41 Identities=37% Similarity=0.687 Sum_probs=31.7
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccc
Q 038510 161 KEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNL 201 (871)
Q Consensus 161 ~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~ 201 (871)
.+++..+. .++..+|+|.|.+|+|||||.-.+......+.|
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 34555444 567789999999999999999988887766543
No 412
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.58 E-value=0.12 Score=51.36 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|.|+|++|+||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999987653
No 413
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=92.52 E-value=0.17 Score=47.51 Aligned_cols=25 Identities=32% Similarity=0.608 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++++.|.+|+||||++..+......
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999999866543
No 414
>PRK13975 thymidylate kinase; Provisional
Probab=92.52 E-value=0.11 Score=51.45 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
.+|.|.|+.|+||||+|+.++......
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 589999999999999999999887643
No 415
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.42 E-value=0.19 Score=60.36 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=36.8
Q ss_pred ccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 150 FMHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+++...
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 3457888888777766554 23345788999999999999999998654
No 416
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.41 E-value=0.091 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHhHHHHHHHHHH
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~ 196 (871)
|.++|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998764
No 417
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=0.29 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+-|..+|++|.|||-||++||..-..
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 56888999999999999999988775
No 418
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.40 E-value=0.13 Score=50.75 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|.+|+||||+|+.+.....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988653
No 419
>PRK14527 adenylate kinase; Provisional
Probab=92.40 E-value=0.13 Score=50.73 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987654
No 420
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.30 E-value=0.21 Score=49.81 Aligned_cols=22 Identities=23% Similarity=0.384 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 7999999999999999999984
No 421
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=92.30 E-value=0.4 Score=52.85 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=34.0
Q ss_pred ccccchHHHHHHHHHhc-------C-------C----CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 152 HFESRKSTFKEILDALS-------N-------R----DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~-------~-------~----~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++|.++.++.+...+. . + ....|.++|++|+|||++|+.++....
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 46788888877755441 1 1 125789999999999999999997654
No 422
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.26 E-value=0.14 Score=49.14 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|.|.|..|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988754
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.24 E-value=0.3 Score=58.90 Aligned_cols=163 Identities=25% Similarity=0.264 Sum_probs=85.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh--------------hccccc--------ccc-------hhhHHHHHHHHHHc
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK--------------ENNLFE--------KSH-------ETVRAGRLLERLKK 220 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~--------------~~~~F~--------~~~-------~~~~~~~l~~~l~~ 220 (871)
.+.+++.|.|+.+.||||+.+.+.-..- .-..|+ ..+ .......+...+..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~ 404 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEK 404 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHh
Confidence 3457899999999999999998864310 011233 000 01111222222211
Q ss_pred -CCcEEEEEecCCCccCh---hhh----ccccCCCCCCcEEEEeecCcchhccccCCcc--eeeccCCCHHHHHHHHHHH
Q 038510 221 -EKKILIILDDIWGGLDL---EAI----GIPLADDNSGCKVLLTARSQDVLSCKMDCQQ--NFFVDVLNEKEAWSLFRKM 290 (871)
Q Consensus 221 -~kr~LlvlDdv~~~~~~---~~l----~~~l~~~~~gs~iivTtr~~~va~~~~~~~~--~~~l~~L~~~~~~~Lf~~~ 290 (871)
..+-|+++|..-...+. ..+ ...+ ...|+.+|+||...+++........ ...+.. + ++... |...
T Consensus 405 ~~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d-~~~l~-~~Yk 479 (782)
T PRK00409 405 ADKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVEF-D-EETLR-PTYR 479 (782)
T ss_pred CCcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-e-cCcCc-EEEE
Confidence 36789999998654332 122 2222 2347789999999776532111111 111211 1 11100 0000
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhc
Q 038510 291 TGDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELR 341 (871)
Q Consensus 291 ~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~ 341 (871)
.....+ -...|-+|++++ |+|-.+.--|.-+-+....+...++.++.
T Consensus 480 l~~G~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 480 LLIGIP---GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EeeCCC---CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 000111 123477788877 89999988888877665566777766654
No 424
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=92.23 E-value=0.18 Score=49.38 Aligned_cols=26 Identities=38% Similarity=0.699 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+-|+|+|-||+||||.++.+......
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~ 27 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAE 27 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHH
Confidence 56899999999999999888765543
No 425
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=0.025 Score=54.15 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=43.1
Q ss_pred ccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHhHhhcCCCCcccCCCcccccccccceee
Q 038510 800 SFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEVIFAADRGDESSNNNTQVIELTQLRTLE 870 (871)
Q Consensus 800 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~l~ 870 (871)
.+++++.|.+.+|..+.+....-+.+-.++|+.|+|++|+.|++-.... +..|++||.|+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-----------L~~lknLr~L~ 182 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-----------LLKLKNLRRLH 182 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-----------HHHhhhhHHHH
Confidence 4678999999999887765332233557999999999999998765421 23567777664
No 426
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.21 E-value=0.12 Score=47.89 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..++.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999988877665
No 427
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.21 E-value=0.39 Score=51.01 Aligned_cols=27 Identities=33% Similarity=0.396 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.-+++-|+|++|+||||||.+++....
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999876543
No 428
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.18 E-value=0.23 Score=48.77 Aligned_cols=43 Identities=19% Similarity=0.227 Sum_probs=30.9
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHH
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
...++|.+..+..+.-.... ..-+.++|..|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHH
Confidence 45677888777776554443 46889999999999999999874
No 429
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.16 E-value=0.12 Score=48.59 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999988764
No 430
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=92.14 E-value=0.13 Score=53.80 Aligned_cols=26 Identities=38% Similarity=0.695 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|.|-||+||||+|..++.....
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~ 28 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSN 28 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 68999999999999999998875553
No 431
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.14 E-value=0.26 Score=48.28 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.+.|.|+|++|+|||||++.+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998874
No 432
>PRK15453 phosphoribulokinase; Provisional
Probab=92.13 E-value=0.16 Score=52.22 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|+|.|.+|+||||+|+.+....+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999999886443
No 433
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.12 E-value=0.13 Score=50.28 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999864
No 434
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.11 E-value=0.18 Score=47.89 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++++|+|..|+|||||+..+......
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 435
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.3 Score=52.31 Aligned_cols=62 Identities=24% Similarity=0.359 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhccc--cc--ccc---------------------hhhHHHHHHHHHHcCCcEEE
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNL--FE--KSH---------------------ETVRAGRLLERLKKEKKILI 226 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~--~~~---------------------~~~~~~~l~~~l~~~kr~Ll 226 (871)
-.+|.|-|-+|+|||||.-++..+...+.. |- +++ .....+.+.+.+.+.+.-++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lv 172 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLV 172 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEE
Confidence 479999999999999999999887764421 11 000 12235667777777788888
Q ss_pred EEecCCC
Q 038510 227 ILDDIWG 233 (871)
Q Consensus 227 vlDdv~~ 233 (871)
|+|-+..
T Consensus 173 VIDSIQT 179 (456)
T COG1066 173 VIDSIQT 179 (456)
T ss_pred EEeccce
Confidence 8888743
No 436
>PRK05439 pantothenate kinase; Provisional
Probab=92.01 E-value=0.25 Score=52.16 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+..-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999887644
No 437
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.00 E-value=0.16 Score=52.91 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
++|+|+|.+|+|||||+..+......+
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~ 28 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGR 28 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 589999999999999999999877654
No 438
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=91.92 E-value=0.16 Score=43.39 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++.+.|.+|+||||++..+......
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999876653
No 439
>PRK13946 shikimate kinase; Provisional
Probab=91.87 E-value=0.14 Score=50.15 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.+.|.++|+.|+||||+++.+......
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~ 36 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGL 36 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 357999999999999999999987654
No 440
>PLN02165 adenylate isopentenyltransferase
Probab=91.84 E-value=0.2 Score=53.13 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=24.4
Q ss_pred cCCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 168 SNRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 168 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
......+|+|+|+.|+||||||..++...
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 44556799999999999999999988654
No 441
>PRK13948 shikimate kinase; Provisional
Probab=91.83 E-value=0.18 Score=49.11 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+.|.++|+.|+||||+++.+......
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999987643
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.82 E-value=0.26 Score=47.76 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++.++|++|+||||++..++.....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999998876553
No 443
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=91.80 E-value=0.3 Score=51.75 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=41.1
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 152 HFESRKSTFKEILDALS------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.|+|.++.++++++.+. +..-+++-++|+.|.||||||..+.+-.+.
T Consensus 62 ~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 62 EFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred cccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 68999999999999887 345689999999999999999998876654
No 444
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.80 E-value=0.15 Score=49.54 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++.|+|..|.||||+++.++.....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 58999999999999999999986654
No 445
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.77 E-value=0.16 Score=50.81 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+.|.|+|++|+|||||++.+...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4678999999999999999988643
No 446
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=91.74 E-value=0.14 Score=46.53 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.+-|.|.|.+|+||||+|..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4568899999999999999998543
No 447
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=91.74 E-value=0.37 Score=48.06 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+....|+|+|.+|+|||||.+.+.+..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 456799999999999999999988754
No 448
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.73 E-value=3.6 Score=47.84 Aligned_cols=160 Identities=17% Similarity=0.174 Sum_probs=90.0
Q ss_pred ccchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-------c---cchhhHHHHH
Q 038510 154 ESRKSTFKEILDALSNR---------DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-------K---SHETVRAGRL 214 (871)
Q Consensus 154 ~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------~---~~~~~~~~~l 214 (871)
.+++..+-.+.+.+..+ -..++.++|.+|+||||+++.++...... -|. . ...+......
T Consensus 404 ~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h-~~evdc~el~~~s~~~~etkl~~~ 482 (953)
T KOG0736|consen 404 PGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLH-LLEVDCYELVAESASHTETKLQAI 482 (953)
T ss_pred ccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCc-eEeccHHHHhhcccchhHHHHHHH
Confidence 35666666777777621 24688999999999999999999877642 122 1 1112223333
Q ss_pred HHHHHcCCcEEEEEecCCCc-------cCh------hhhcc--ccCCCCCCcEEEEeecC-cchhcc-ccCCcceeeccC
Q 038510 215 LERLKKEKKILIILDDIWGG-------LDL------EAIGI--PLADDNSGCKVLLTARS-QDVLSC-KMDCQQNFFVDV 277 (871)
Q Consensus 215 ~~~l~~~kr~LlvlDdv~~~-------~~~------~~l~~--~l~~~~~gs~iivTtr~-~~va~~-~~~~~~~~~l~~ 277 (871)
.++.+.-....|.+-++.-. ++. +.... -++...++--++.||.+ +.+... ....-+.++++.
T Consensus 483 f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~ 562 (953)
T KOG0736|consen 483 FSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPA 562 (953)
T ss_pred HHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCC
Confidence 33333345667777665321 111 11111 12223334444444444 444311 112346789999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh
Q 038510 278 LNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI 316 (871)
Q Consensus 278 L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 316 (871)
+++++=.++|+.+.....-.. ...-++.+++|.|.-+
T Consensus 563 lse~qRl~iLq~y~~~~~~n~--~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 563 LSEEQRLEILQWYLNHLPLNQ--DVNLKQLARKTSGFSF 599 (953)
T ss_pred CCHHHHHHHHHHHHhccccch--HHHHHHHHHhcCCCCH
Confidence 999999999998876433222 1234567777777643
No 449
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.73 E-value=0.26 Score=47.26 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=29.4
Q ss_pred ccchHHHHHHHHHhc---CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 154 ESRKSTFKEILDALS---NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 154 ~gr~~~~~~l~~~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|....+.++++.+. ..+ .-|.|+|..|+||+.+|+.+++...
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s~ 47 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNSP 47 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCST
T ss_pred EeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhhh
Confidence 455566666666554 333 4556999999999999999998543
No 450
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=91.72 E-value=0.33 Score=55.96 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=37.9
Q ss_pred ccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 150 FMHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...++|+...++++.+.+. ...-.-|.|+|..|+|||++|+.+++...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3457888888888777765 33345788999999999999999998654
No 451
>PRK09354 recA recombinase A; Provisional
Probab=91.72 E-value=0.53 Score=50.48 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.-+++-|+|++|+||||||.++.....
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~ 85 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ 85 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999876553
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.70 E-value=0.14 Score=49.83 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...|++|+|++|+|||||.+.+..=..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 456999999999999999998875443
No 453
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=0.39 Score=47.37 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.-.+-+|.|+.|.||||||..+.-++
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999997655
No 454
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.69 E-value=0.3 Score=57.82 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
.-..|+|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999865
No 455
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.65 E-value=0.33 Score=45.76 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred EEcCCCCcHhHHHHHHHHHHh
Q 038510 177 VYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 177 I~G~gGiGKTtLa~~v~~~~~ 197 (871)
|+|++|+||||+|+.++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 689999999999999998764
No 456
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=91.64 E-value=0.24 Score=53.91 Aligned_cols=47 Identities=23% Similarity=0.279 Sum_probs=34.6
Q ss_pred ccccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 152 HFESRKSTFKEILDALSN--------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++|.++.++.+.-++.. ...+.|.++|++|+|||++|+.+......
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467887777766544431 02367899999999999999999886653
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.64 E-value=4.6 Score=44.03 Aligned_cols=49 Identities=27% Similarity=0.424 Sum_probs=38.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccchhhHHHHHHHHHHcCCcEEEEEecCCCccChhhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHETVRAGRLLERLKKEKKILIILDDIWGGLDLEAI 240 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l 240 (871)
...||-.+|.-|.||||-|-.+++..+.+ +++.++|==|+|.....+++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~---------------------~~kvllVaaD~~RpAA~eQL 147 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK---------------------GKKVLLVAADTYRPAAIEQL 147 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc---------------------CCceEEEecccCChHHHHHH
Confidence 35789999999999999988887766643 68888888888887544433
No 458
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.61 E-value=0.14 Score=49.03 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHhHHHHHHHHH
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~ 195 (871)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999876
No 459
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=91.58 E-value=0.26 Score=42.95 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.1
Q ss_pred EEEEEc-CCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYG-MGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G-~gGiGKTtLa~~v~~~~~ 197 (871)
+|+++| -||+||||+|..+.....
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~ 25 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALA 25 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 356666 789999999999887655
No 460
>PRK04182 cytidylate kinase; Provisional
Probab=91.51 E-value=0.17 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+|.|.|+.|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~ 26 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGL 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999876543
No 461
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.51 E-value=0.2 Score=52.80 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..++++|+|++|+||||++..++....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999988876654
No 462
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.43 E-value=0.16 Score=55.07 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=43.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh----cccccc------------cchhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE----NNLFEK------------SHETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~------------~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
..+=+-|||..|.|||.|+-.+|+...+ +-||.. ......+..+.+.+.+ +..||.+|++.-.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQVT 139 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeeecc
Confidence 4677899999999999999999998655 336661 1112234455566663 6669999997543
No 463
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.40 E-value=0.17 Score=46.58 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+.|.++|..|+|||||++.+....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999997644
No 464
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.36 E-value=0.5 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
+.+++.|.|+.|.||||+.+.+.-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 467999999999999999988764
No 465
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=91.36 E-value=0.51 Score=49.51 Aligned_cols=56 Identities=18% Similarity=0.367 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-ccchhhHHHHHHHHHHcC---CcEEEEEecC
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-KSHETVRAGRLLERLKKE---KKILIILDDI 231 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~~~~~~~~l~~~l~~~---kr~LlvlDdv 231 (871)
..+|.|.|+.|+||||+++.+.. . +.+. ..........+.+.+... .+.-+++|=-
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~~-~---g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r 65 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALED-L---GYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVR 65 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-c---CCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccC
Confidence 46899999999999999999942 1 1111 222233344555544432 5567777654
No 466
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.32 E-value=0.15 Score=47.20 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+++|+|..|+|||||.+.+.....
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 46899999999999999999886554
No 467
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.28 E-value=0.36 Score=48.24 Aligned_cols=26 Identities=35% Similarity=0.692 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
-..++|.|.+|+|||+|++.+.+...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~ 40 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD 40 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEEcCcccccchhhHHHHhccc
Confidence 46899999999999999999988765
No 468
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=91.28 E-value=0.26 Score=56.11 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=34.7
Q ss_pred cccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 153 FESRKSTFKEILDALSN-----RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.--.+.++++..||.+ ...+++.+.|++|+||||.++.+++...
T Consensus 21 LavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 21 LAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred hhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 33345567788888862 2357899999999999999999998764
No 469
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.23 E-value=0.19 Score=48.51 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|.|.|..|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 789999999999999999987643
No 470
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.20 E-value=0.32 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=21.7
Q ss_pred eEEEEEc-CCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYG-MGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G-~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+| -||+||||++-.+..-...
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~ 28 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALAR 28 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 6899999 5789999999988876654
No 471
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.20 E-value=0.17 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.-.+++|+|++|+|||||...+.--.
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34699999999999999998887533
No 472
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=2.3 Score=46.56 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=41.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc----------cchhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK----------SHETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~----------~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.++-+-..|++|.|||.|+++|+...... -|+- ...+..+..+...-+..+...+++|++...
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~at-ff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidsl 257 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGAT-FFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSL 257 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcce-EeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHH
Confidence 34556689999999999999999887764 3441 011223333333334467889999998543
No 473
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.16 E-value=0.19 Score=48.49 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..|.|+|+.|+||||+|+.+......
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~ 28 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGY 28 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45889999999999999999987654
No 474
>PRK04296 thymidine kinase; Provisional
Probab=91.14 E-value=0.57 Score=46.10 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhcc--------cccccc-------------h---hhHHHHHHHHH--HcCCcEEE
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENN--------LFEKSH-------------E---TVRAGRLLERL--KKEKKILI 226 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~F~~~~-------------~---~~~~~~l~~~l--~~~kr~Ll 226 (871)
.++.|+|..|.||||+|..+........ .|+... . ......+.+.+ ..++.-+|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 4778999999999999988877654321 122000 0 01122233333 22344589
Q ss_pred EEecCCCc--cChhhhccccCCCCCCcEEEEeecCcch
Q 038510 227 ILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQDV 262 (871)
Q Consensus 227 vlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v 262 (871)
|+|.+.-. ++..++...+ ...|..||+|.++...
T Consensus 83 iIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 83 LIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred EEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 99999543 1122222221 3457779999988653
No 475
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.13 E-value=0.15 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=19.0
Q ss_pred EEcCCCCcHhHHHHHHHHHHhh
Q 038510 177 VYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 177 I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|+|++|+||||+++.+.+....
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999987765
No 476
>PLN02348 phosphoribulokinase
Probab=91.12 E-value=0.23 Score=53.64 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+..-+|+|.|.+|+||||+|+.+.+...
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998764
No 477
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.11 E-value=0.35 Score=51.52 Aligned_cols=37 Identities=27% Similarity=0.587 Sum_probs=28.2
Q ss_pred HHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 162 EILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 162 ~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.+++.+. .+...+|+|+|.+|+||||++..+......
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444443 356789999999999999999998876544
No 478
>PF13245 AAA_19: Part of AAA domain
Probab=91.08 E-value=0.27 Score=40.03 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.5
Q ss_pred CceEEEEEcCCCCcHhHHH-HHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLV-KEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa-~~v~~~~ 196 (871)
+.+++.|.|.+|.|||+++ ..+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568889999999999544 4444433
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.06 E-value=0.61 Score=46.99 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=53.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH-hhc------------cccc--------cc-------chhhHHHHHHHHHH-cC
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA-KEN------------NLFE--------KS-------HETVRAGRLLERLK-KE 221 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~------------~~F~--------~~-------~~~~~~~~l~~~l~-~~ 221 (871)
..+++.|.|+.|.||||+.+.+.-.. -.+ ..|+ .+ .......++...+. .+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~ 109 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCT 109 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCC
Confidence 35788999999999999999987632 111 1122 00 11112333333333 24
Q ss_pred CcEEEEEecCCCccC-h------hhhccccCCCCCCcEEEEeecCcchh
Q 038510 222 KKILIILDDIWGGLD-L------EAIGIPLADDNSGCKVLLTARSQDVL 263 (871)
Q Consensus 222 kr~LlvlDdv~~~~~-~------~~l~~~l~~~~~gs~iivTtr~~~va 263 (871)
++-|+++|+.-...+ . ..+...+... .++.+|++|...+++
T Consensus 110 ~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~ 157 (222)
T cd03287 110 SRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLG 157 (222)
T ss_pred CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHH
Confidence 689999999743311 1 1122233222 578899999998875
No 480
>PRK10037 cell division protein; Provisional
Probab=91.01 E-value=0.28 Score=50.74 Aligned_cols=26 Identities=19% Similarity=0.454 Sum_probs=20.5
Q ss_pred eEEEEE-cCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVY-GMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~-G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|++. .-||+||||+|..+......
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~ 28 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQM 28 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHh
Confidence 367766 47999999999998876654
No 481
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=90.99 E-value=0.43 Score=51.06 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=28.5
Q ss_pred HHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 162 EILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 162 ~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++++.+. .++..+|+|.|.+|+|||||+..+....+.
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4444443 456789999999999999999998776654
No 482
>PLN02796 D-glycerate 3-kinase
Probab=90.97 E-value=0.2 Score=53.38 Aligned_cols=27 Identities=33% Similarity=0.261 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..-+|+|.|..|+|||||++.+.....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 346899999999999999999987664
No 483
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=90.97 E-value=0.31 Score=50.27 Aligned_cols=26 Identities=38% Similarity=0.652 Sum_probs=21.3
Q ss_pred eEEEEEc-CCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYG-MGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G-~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|++ -||+||||+|..++.....
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~ 28 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKL 28 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 5788876 9999999999998876553
No 484
>PRK14974 cell division protein FtsY; Provisional
Probab=90.97 E-value=0.43 Score=51.19 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+..+|.++|+.|+||||++..++.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999988888765543
No 485
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=90.93 E-value=0.18 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.++|++|+||||+|+.+.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987654
No 486
>PLN02200 adenylate kinase family protein
Probab=90.93 E-value=0.23 Score=50.56 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|.|.|++|+||||+|+.+.....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346889999999999999999987654
No 487
>PRK06761 hypothetical protein; Provisional
Probab=90.84 E-value=0.21 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|.|.|++|+||||+++.++.....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 58999999999999999999987653
No 488
>PLN02318 phosphoribulokinase/uridine kinase
Probab=90.79 E-value=0.27 Score=55.77 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.++..+|+|.|.+|.||||||+.+...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 345789999999999999999999753
No 489
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.78 E-value=0.93 Score=50.09 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++++|+.|+||||++..+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999877654
No 490
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=90.72 E-value=0.49 Score=44.59 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+..+|=+.|.+|.||||+|.+++.....
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 345678889999999999999999987664
No 491
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=90.66 E-value=0.57 Score=49.61 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=33.4
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 152 HFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++=..+....++.++..+ +.|.|.|..|+||||+|+.++.....
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~ 90 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNW 90 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCC
Confidence 3444445556677777543 46999999999999999999987653
No 492
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.64 E-value=2.8 Score=45.88 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=35.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH-HhhcccccccchhhHHHHHHHHHHc--CCcEEEEEecCCC
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ-AKENNLFEKSHETVRAGRLLERLKK--EKKILIILDDIWG 233 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~~~~~~~~l~~~l~~--~kr~LlvlDdv~~ 233 (871)
.-+...|+.|+|||.||.++... .-..+.|-. .......+.....+ .+-=++|+|++..
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T--~a~Lf~~L~~~~lg~v~~~DlLI~DEvgy 271 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGTIT--VAKLFYNISTRQIGLVGRWDVVAFDEVAT 271 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCc--HHHHHHHHHHHHHhhhccCCEEEEEcCCC
Confidence 45778999999999999998777 333333331 11222222211110 2456999999965
No 493
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=90.64 E-value=0.21 Score=55.11 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..-++.|+|+|..|+||||||+.+.+...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999997643
No 494
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=90.60 E-value=0.26 Score=48.85 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998765
No 495
>PTZ00088 adenylate kinase 1; Provisional
Probab=90.59 E-value=0.22 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.545 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.|.|++|+||||+|+.+.....
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999988654
No 496
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=90.53 E-value=0.25 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
..+|+|+|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 46899999999999999988875
No 497
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=0.51 Score=54.32 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=20.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
...++++||++|.||||+|..+-+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999988754
No 498
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=90.49 E-value=0.43 Score=56.36 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
....++|+|..|.|||||++.+..-.
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~ 393 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFY 393 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35689999999999999999997643
No 499
>PRK10867 signal recognition particle protein; Provisional
Probab=90.48 E-value=1.3 Score=49.36 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.++|.+|+||||.|..++.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3679999999999999988777765543
No 500
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=90.48 E-value=0.17 Score=51.24 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.-|.|+|++|+|||||+..+..+.-.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~ 31 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP 31 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 46899999999999999999876543
Done!