Query 038510
Match_columns 871
No_of_seqs 432 out of 4328
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 20:32:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 7.7E-44 2.6E-48 412.0 14.6 283 154-453 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 8.7E-36 3E-40 382.3 22.0 282 147-451 120-452 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.9E-35 6.6E-40 343.5 17.0 251 153-445 130-437 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 9.6E-32 3.3E-36 315.9 23.8 277 148-449 121-450 (591)
5 3t6q_A CD180 antigen; protein- 99.9 4.3E-24 1.5E-28 252.0 29.2 358 471-839 30-460 (606)
6 2z63_A TOLL-like receptor 4, v 99.9 4.5E-24 1.5E-28 250.0 26.7 155 471-626 25-190 (570)
7 3vq2_A TLR4, TOLL-like recepto 99.9 5.6E-24 1.9E-28 251.0 27.4 154 471-625 29-193 (606)
8 1o6v_A Internalin A; bacterial 99.9 1.1E-23 3.9E-28 239.6 27.1 319 473-838 45-363 (466)
9 4fmz_A Internalin; leucine ric 99.9 6.2E-24 2.1E-28 232.1 22.1 303 472-839 42-344 (347)
10 4eco_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 252.8 20.5 316 511-844 198-581 (636)
11 4ecn_A Leucine-rich repeat pro 99.9 7.8E-24 2.7E-28 253.9 23.2 334 484-845 435-822 (876)
12 3vq2_A TLR4, TOLL-like recepto 99.9 2.6E-23 9E-28 245.3 27.5 150 476-627 13-167 (606)
13 4ecn_A Leucine-rich repeat pro 99.9 7.2E-24 2.5E-28 254.2 21.8 305 511-839 440-787 (876)
14 3t6q_A CD180 antigen; protein- 99.9 9E-23 3.1E-27 240.7 30.1 269 471-755 54-410 (606)
15 1o6v_A Internalin A; bacterial 99.9 2.1E-22 7.1E-27 229.1 27.8 325 468-839 62-386 (466)
16 4eco_A Uncharacterized protein 99.9 2.1E-23 7E-28 246.2 20.0 328 494-841 204-600 (636)
17 2z81_A CD282 antigen, TOLL-lik 99.9 6E-23 2.1E-27 239.2 22.2 325 472-818 24-425 (549)
18 3v47_A TOLL-like receptor 5B a 99.9 1.5E-22 5.3E-27 229.9 24.2 350 472-839 28-406 (455)
19 3rgz_A Protein brassinosteroid 99.9 4.6E-23 1.6E-27 249.0 20.8 339 473-839 177-525 (768)
20 3o6n_A APL1; leucine-rich repe 99.9 1.6E-22 5.4E-27 224.7 22.7 305 493-839 42-350 (390)
21 2z81_A CD282 antigen, TOLL-lik 99.9 2.5E-22 8.4E-27 234.0 24.9 344 471-838 47-483 (549)
22 2z7x_B TOLL-like receptor 1, v 99.9 5.3E-22 1.8E-26 229.5 26.9 121 474-598 21-148 (520)
23 3oja_B Anopheles plasmodium-re 99.9 2.3E-22 7.9E-27 235.9 22.7 306 493-840 48-357 (597)
24 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-21 4.1E-26 239.2 29.6 152 472-624 22-185 (844)
25 4fmz_A Internalin; leucine ric 99.9 5.1E-22 1.7E-26 216.9 23.5 284 468-813 60-344 (347)
26 3rgz_A Protein brassinosteroid 99.9 1.3E-22 4.6E-27 245.0 20.0 208 643-871 436-711 (768)
27 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-21 4E-26 234.4 26.3 257 472-729 23-306 (680)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.7E-21 5.8E-26 227.2 26.2 144 476-625 33-181 (562)
29 2z63_A TOLL-like receptor 4, v 99.9 9.7E-22 3.3E-26 230.1 24.0 148 477-627 10-163 (570)
30 2id5_A Lingo-1, leucine rich r 99.9 2.8E-21 9.6E-26 220.8 27.2 311 477-812 14-330 (477)
31 3v47_A TOLL-like receptor 5B a 99.9 2.4E-21 8.2E-26 220.0 25.1 356 477-871 13-402 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-21 6.5E-26 219.4 23.9 206 472-707 40-245 (457)
33 1ziw_A TOLL-like receptor 3; i 99.9 5.7E-21 1.9E-25 228.5 27.0 358 471-838 46-440 (680)
34 3j0a_A TOLL-like receptor 5; m 99.9 5E-21 1.7E-25 233.7 27.0 148 478-627 8-162 (844)
35 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-20 3.6E-25 218.6 28.3 143 477-625 3-150 (520)
36 2id5_A Lingo-1, leucine rich r 99.9 8.3E-21 2.8E-25 216.9 26.0 311 499-839 14-331 (477)
37 3bz5_A Internalin-J, INLJ; leu 99.9 3.4E-21 1.1E-25 217.4 19.6 302 494-838 40-349 (457)
38 3o6n_A APL1; leucine-rich repe 99.9 5.9E-21 2E-25 212.0 20.8 302 472-813 43-350 (390)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.9E-20 1.7E-24 214.8 28.1 127 494-626 29-159 (562)
40 4g8a_A TOLL-like receptor 4; l 99.9 3.9E-20 1.3E-24 219.5 25.4 355 471-838 49-577 (635)
41 3oja_B Anopheles plasmodium-re 99.8 1.4E-20 4.9E-25 220.7 20.8 301 473-813 50-356 (597)
42 1xku_A Decorin; proteoglycan, 99.8 2.4E-19 8.2E-24 194.1 26.6 290 497-838 32-329 (330)
43 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-20 1.1E-24 201.2 19.3 290 497-839 34-331 (332)
44 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-19 7.1E-24 213.2 27.2 147 478-627 35-187 (635)
45 1jl5_A Outer protein YOPM; leu 99.8 1.3E-18 4.4E-23 196.1 26.5 282 473-817 90-371 (454)
46 4fcg_A Uncharacterized protein 99.8 4.1E-19 1.4E-23 191.6 18.9 229 519-836 80-309 (328)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.1E-18 3.8E-23 189.0 20.9 291 475-813 34-331 (332)
48 1xku_A Decorin; proteoglycan, 99.8 4E-18 1.4E-22 184.5 25.1 292 474-812 31-329 (330)
49 1jl5_A Outer protein YOPM; leu 99.8 5.7E-18 1.9E-22 190.8 25.8 139 474-625 111-249 (454)
50 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-17 6.1E-22 192.5 26.3 158 475-666 41-198 (622)
51 4fcg_A Uncharacterized protein 99.8 4.9E-18 1.7E-22 183.1 18.2 149 474-625 81-241 (328)
52 2z80_A TOLL-like receptor 2, v 99.8 5.9E-18 2E-22 185.0 19.1 102 521-623 53-159 (353)
53 2z80_A TOLL-like receptor 2, v 99.8 1.1E-17 3.6E-22 182.9 18.8 193 478-683 35-233 (353)
54 3zyj_A Leucine-rich repeat-con 99.8 1.2E-17 4E-22 188.4 19.3 241 476-756 45-290 (440)
55 3zyi_A Leucine-rich repeat-con 99.8 1.3E-17 4.4E-22 188.8 19.4 241 476-756 56-301 (452)
56 1ogq_A PGIP-2, polygalacturona 99.8 2E-18 6.9E-23 185.0 11.6 247 496-790 50-306 (313)
57 2z66_A Variable lymphocyte rec 99.7 7.4E-18 2.5E-22 180.3 14.8 190 477-679 10-206 (306)
58 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-17 3.7E-22 179.3 13.3 249 520-819 50-308 (313)
59 1ozn_A Reticulon 4 receptor; N 99.7 2.3E-17 7.8E-22 174.5 15.1 194 473-679 31-232 (285)
60 3g06_A SSPH2 (leucine-rich rep 99.7 1.8E-16 6.1E-21 184.1 23.8 259 496-842 40-298 (622)
61 3ogk_B Coronatine-insensitive 99.7 7.8E-19 2.7E-23 206.4 2.6 87 772-871 433-520 (592)
62 3zyj_A Leucine-rich repeat-con 99.7 2.6E-16 8.9E-21 177.3 19.8 242 498-786 45-290 (440)
63 3zyi_A Leucine-rich repeat-con 99.7 4.1E-16 1.4E-20 176.4 21.3 242 498-786 56-301 (452)
64 1ozn_A Reticulon 4 receptor; N 99.7 3.2E-16 1.1E-20 165.6 17.3 217 477-707 14-237 (285)
65 1h6u_A Internalin H; cell adhe 99.7 5.2E-16 1.8E-20 165.7 19.0 190 472-683 39-228 (308)
66 2z66_A Variable lymphocyte rec 99.7 2.1E-16 7E-21 169.0 15.3 147 499-661 10-162 (306)
67 2p1m_B Transport inhibitor res 99.7 2.2E-18 7.5E-23 202.7 -0.9 138 646-784 286-441 (594)
68 1p9a_G Platelet glycoprotein I 99.7 5.3E-16 1.8E-20 163.9 17.2 196 472-682 8-205 (290)
69 2o6q_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 160.2 18.9 194 475-682 17-215 (270)
70 3o53_A Protein LRIM1, AGAP0063 99.7 2.7E-17 9.3E-22 176.6 6.9 246 494-791 32-278 (317)
71 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-18 6.5E-23 196.4 -5.3 351 473-839 2-409 (461)
72 1z7x_W Ribonuclease inhibitor; 99.6 2.6E-18 8.9E-23 195.3 -5.1 350 473-840 27-439 (461)
73 3ogk_B Coronatine-insensitive 99.6 1.2E-16 4E-21 187.8 8.3 172 473-657 163-350 (592)
74 1h6u_A Internalin H; cell adhe 99.6 5.4E-16 1.9E-20 165.5 12.1 205 479-730 24-228 (308)
75 3o53_A Protein LRIM1, AGAP0063 99.6 1.3E-16 4.5E-21 171.3 7.3 189 473-683 33-225 (317)
76 2z62_A TOLL-like receptor 4, v 99.6 4.6E-15 1.6E-19 155.9 17.7 142 482-626 15-162 (276)
77 2xwt_C Thyrotropin receptor; s 99.6 3E-15 1E-19 153.6 15.2 139 483-624 20-167 (239)
78 2o6q_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 151.9 19.3 177 472-661 35-217 (270)
79 2z62_A TOLL-like receptor 4, v 99.6 3.8E-15 1.3E-19 156.5 15.1 197 472-682 26-234 (276)
80 1h6t_A Internalin B; cell adhe 99.6 7.6E-15 2.6E-19 155.2 17.0 173 472-665 44-216 (291)
81 3oja_A Leucine-rich immune mol 99.6 1.9E-16 6.3E-21 180.3 4.7 241 494-786 32-273 (487)
82 1wwl_A Monocyte differentiatio 99.6 1.7E-15 5.7E-20 162.3 11.8 194 475-682 64-284 (312)
83 3oja_A Leucine-rich immune mol 99.6 9.3E-16 3.2E-20 174.5 10.1 213 473-706 33-248 (487)
84 1p9a_G Platelet glycoprotein I 99.6 6.9E-15 2.3E-19 155.4 15.9 173 494-682 8-182 (290)
85 1wwl_A Monocyte differentiatio 99.6 1.1E-16 3.7E-21 171.5 1.9 80 519-598 94-183 (312)
86 3m19_A Variable lymphocyte rec 99.6 2.4E-14 8.1E-19 148.0 18.7 176 475-664 15-194 (251)
87 2xwt_C Thyrotropin receptor; s 99.6 6.6E-15 2.3E-19 151.0 14.4 192 472-679 29-233 (239)
88 3rfs_A Internalin B, repeat mo 99.6 2E-14 6.7E-19 150.6 18.2 175 472-661 39-217 (272)
89 1h6t_A Internalin B; cell adhe 99.6 8.6E-15 2.9E-19 154.8 13.2 187 476-684 26-212 (291)
90 2p1m_B Transport inhibitor res 99.6 1.3E-16 4.6E-21 187.4 -0.9 346 474-840 105-518 (594)
91 1m9s_A Internalin B; cell inva 99.5 3.3E-14 1.1E-18 164.9 16.0 174 471-665 40-213 (605)
92 3rfs_A Internalin B, repeat mo 99.5 1E-13 3.4E-18 145.2 17.3 157 468-625 57-217 (272)
93 3m19_A Variable lymphocyte rec 99.5 9.5E-14 3.3E-18 143.5 16.7 154 472-626 33-192 (251)
94 3e6j_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 140.9 16.2 149 476-626 21-172 (229)
95 2o6s_A Variable lymphocyte rec 99.5 6.4E-14 2.2E-18 140.3 13.6 147 477-625 10-160 (208)
96 4ezg_A Putative uncharacterize 99.5 5.7E-14 1.9E-18 139.3 12.6 145 473-623 43-191 (197)
97 2v9t_B SLIT homolog 2 protein 99.5 1.4E-13 4.8E-18 138.9 14.5 148 477-626 14-165 (220)
98 2ast_B S-phase kinase-associat 99.5 1.4E-14 4.9E-19 156.9 7.6 122 498-623 49-178 (336)
99 1m9s_A Internalin B; cell inva 99.5 3.7E-14 1.3E-18 164.5 11.3 189 475-685 22-210 (605)
100 1xeu_A Internalin C; cellular 99.5 6.5E-14 2.2E-18 145.6 11.9 171 473-665 18-188 (263)
101 4ay9_X Follicle-stimulating ho 99.5 6.8E-13 2.3E-17 144.3 19.1 239 523-838 12-256 (350)
102 2v70_A SLIT-2, SLIT homolog 2 99.5 2.4E-13 8.2E-18 137.2 13.9 148 477-626 14-166 (220)
103 4ezg_A Putative uncharacterize 99.5 1.9E-13 6.4E-18 135.5 12.8 149 494-661 42-193 (197)
104 4glp_A Monocyte differentiatio 99.4 4.8E-14 1.7E-18 150.7 6.2 177 494-682 89-282 (310)
105 3cvr_A Invasion plasmid antige 99.4 9.3E-13 3.2E-17 151.0 16.8 180 475-682 60-240 (571)
106 2fna_A Conserved hypothetical 99.4 2E-12 6.7E-17 141.2 18.7 266 148-444 10-356 (357)
107 4ay9_X Follicle-stimulating ho 99.4 8.2E-13 2.8E-17 143.7 15.2 147 478-625 13-166 (350)
108 1xeu_A Internalin C; cellular 99.4 7.8E-13 2.7E-17 137.4 13.6 148 471-626 38-185 (263)
109 2ast_B S-phase kinase-associat 99.4 8.9E-14 3E-18 150.6 6.5 174 496-680 70-255 (336)
110 2xot_A Amphoterin-induced prot 99.4 9.6E-13 3.3E-17 143.7 12.3 147 477-625 21-175 (361)
111 2ca6_A RAN GTPase-activating p 99.4 5.5E-14 1.9E-18 155.4 2.1 236 494-756 30-314 (386)
112 2qen_A Walker-type ATPase; unk 99.4 6.7E-12 2.3E-16 136.6 18.5 267 147-445 8-349 (350)
113 4glp_A Monocyte differentiatio 99.4 7.2E-13 2.5E-17 141.6 10.5 191 474-681 91-303 (310)
114 2xot_A Amphoterin-induced prot 99.4 1.9E-12 6.4E-17 141.4 13.7 153 472-625 37-201 (361)
115 2ca6_A RAN GTPase-activating p 99.4 1.1E-13 3.7E-18 153.1 3.5 241 516-786 28-314 (386)
116 2ell_A Acidic leucine-rich nuc 99.4 2E-12 6.8E-17 124.5 11.5 104 520-624 24-131 (168)
117 2v9t_B SLIT homolog 2 protein 99.4 4E-12 1.4E-16 128.2 13.7 146 499-660 14-163 (220)
118 3e6j_A Variable lymphocyte rec 99.4 7.3E-12 2.5E-16 127.2 15.3 149 498-663 21-173 (229)
119 2o6s_A Variable lymphocyte rec 99.3 3.3E-12 1.1E-16 127.7 11.9 147 472-626 26-178 (208)
120 3cvr_A Invasion plasmid antige 99.3 6.5E-12 2.2E-16 144.0 15.6 139 496-666 59-197 (571)
121 2ell_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 122.9 10.8 129 495-626 23-160 (168)
122 2v70_A SLIT-2, SLIT homolog 2 99.3 8.6E-12 2.9E-16 125.7 13.9 146 499-660 14-164 (220)
123 3goz_A Leucine-rich repeat-con 99.3 8.9E-13 3E-17 144.2 6.9 242 516-785 18-294 (362)
124 1a9n_A U2A', U2A'; complex (nu 99.3 2.3E-12 7.9E-17 125.0 8.0 127 494-623 17-150 (176)
125 2je0_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 120.2 8.7 103 516-620 38-147 (149)
126 1w5s_A Origin recognition comp 99.3 3.3E-11 1.1E-15 134.3 18.1 258 151-427 22-370 (412)
127 2wfh_A SLIT homolog 2 protein 99.3 1.4E-11 4.7E-16 121.3 12.9 123 500-626 14-139 (193)
128 4b8c_D Glucose-repressible alc 99.3 4E-12 1.4E-16 151.3 10.7 151 474-627 173-330 (727)
129 3qfl_A MLA10; coiled-coil, (CC 99.3 3.9E-12 1.3E-16 112.0 7.8 76 18-93 5-82 (115)
130 1w8a_A SLIT protein; signaling 99.3 1.9E-11 6.4E-16 120.4 12.2 122 500-625 12-138 (192)
131 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.3E-16 116.1 9.0 122 473-596 16-148 (149)
132 3goz_A Leucine-rich repeat-con 99.2 4.1E-12 1.4E-16 138.9 5.6 202 473-683 21-264 (362)
133 1njg_A DNA polymerase III subu 99.2 1.1E-10 3.9E-15 119.6 15.4 177 148-325 20-231 (250)
134 1a9n_A U2A', U2A'; complex (nu 99.2 1.8E-11 6.1E-16 118.7 8.3 124 473-598 18-150 (176)
135 1w8a_A SLIT protein; signaling 99.2 7.2E-11 2.4E-15 116.2 12.6 127 476-603 10-141 (192)
136 2wfh_A SLIT homolog 2 protein 99.2 1.3E-10 4.6E-15 114.2 13.2 121 477-599 13-137 (193)
137 4b8c_D Glucose-repressible alc 99.2 1E-11 3.6E-16 147.7 5.5 112 494-606 222-334 (727)
138 2o6r_A Variable lymphocyte rec 99.2 1.9E-10 6.5E-15 111.5 13.3 105 520-625 28-136 (177)
139 2o6r_A Variable lymphocyte rec 99.2 1.9E-10 6.5E-15 111.5 13.0 127 476-603 9-139 (177)
140 1dce_A Protein (RAB geranylger 99.2 7.7E-11 2.6E-15 135.8 11.6 119 498-619 443-566 (567)
141 1dce_A Protein (RAB geranylger 99.1 1.9E-10 6.5E-15 132.5 12.3 102 521-626 442-546 (567)
142 2chg_A Replication factor C sm 99.1 1E-09 3.5E-14 110.6 16.0 175 148-323 14-205 (226)
143 2r9u_A Variable lymphocyte rec 99.0 8.1E-10 2.8E-14 106.5 11.2 101 523-626 15-118 (174)
144 3g39_A Variable lymphocyte rec 99.0 9E-10 3.1E-14 105.8 11.1 102 522-626 11-115 (170)
145 1ds9_A Outer arm dynein; leuci 99.0 6.3E-12 2.1E-16 124.5 -4.6 107 516-625 44-152 (198)
146 1hqc_A RUVB; extended AAA-ATPa 99.0 1.5E-09 5.2E-14 116.5 13.0 174 149-325 10-214 (324)
147 1ds9_A Outer arm dynein; leuci 99.0 1E-11 3.5E-16 123.0 -4.1 144 521-678 24-180 (198)
148 1sxj_B Activator 1 37 kDa subu 99.0 4.9E-09 1.7E-13 112.3 14.8 177 148-325 18-213 (323)
149 2r9u_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 102.4 11.2 97 499-598 15-115 (174)
150 2qby_B CDC6 homolog 3, cell di 98.9 1.5E-08 5E-13 111.6 15.7 255 151-427 20-338 (384)
151 3g39_A Variable lymphocyte rec 98.9 7.5E-09 2.6E-13 99.3 11.1 98 499-599 12-113 (170)
152 3sb4_A Hypothetical leucine ri 98.8 9.2E-09 3.2E-13 110.5 10.6 167 495-677 100-326 (329)
153 2v1u_A Cell division control p 98.8 3.3E-08 1.1E-12 108.8 15.2 253 151-427 19-350 (387)
154 2qby_A CDC6 homolog 1, cell di 98.8 3.4E-08 1.2E-12 108.6 14.5 214 151-379 20-296 (386)
155 3sb4_A Hypothetical leucine ri 98.8 8.9E-09 3E-13 110.6 9.3 103 519-626 24-137 (329)
156 1iqp_A RFCS; clamp loader, ext 98.8 3.7E-08 1.3E-12 105.7 13.9 176 149-325 23-215 (327)
157 1fnn_A CDC6P, cell division co 98.7 2.6E-07 8.8E-12 101.7 17.1 256 151-427 17-350 (389)
158 2ifg_A High affinity nerve gro 98.6 8.1E-08 2.8E-12 104.0 10.1 97 526-625 14-115 (347)
159 2chq_A Replication factor C sm 98.6 5E-07 1.7E-11 96.3 15.6 174 149-323 15-205 (319)
160 1jr3_A DNA polymerase III subu 98.6 3.8E-07 1.3E-11 99.7 14.1 172 150-322 15-221 (373)
161 4fdw_A Leucine rich hypothetic 98.6 3.4E-06 1.2E-10 92.5 21.2 263 495-811 112-379 (401)
162 3un9_A NLR family member X1; l 98.5 1.4E-08 4.6E-13 110.6 1.6 14 474-487 72-85 (372)
163 1jbk_A CLPB protein; beta barr 98.5 3.2E-07 1.1E-11 89.7 10.0 136 150-287 21-194 (195)
164 2ifg_A High affinity nerve gro 98.5 2E-07 6.8E-12 100.9 8.9 90 507-598 20-113 (347)
165 4fdw_A Leucine rich hypothetic 98.5 1.7E-06 5.7E-11 95.0 15.2 234 497-754 136-379 (401)
166 3h4m_A Proteasome-activating n 98.4 2.2E-06 7.5E-11 89.7 14.9 168 149-320 15-229 (285)
167 1sxj_D Activator 1 41 kDa subu 98.4 1.3E-06 4.3E-11 94.7 12.4 173 149-322 35-235 (353)
168 3pvs_A Replication-associated 98.4 3.1E-06 1.1E-10 93.8 14.6 171 148-322 23-215 (447)
169 2qz4_A Paraplegin; AAA+, SPG7, 98.4 9.1E-06 3.1E-10 83.7 17.1 170 150-321 5-221 (262)
170 4fs7_A Uncharacterized protein 98.3 1.5E-05 5E-10 87.7 19.6 304 493-837 68-375 (394)
171 4fs7_A Uncharacterized protein 98.3 1.5E-05 5.3E-10 87.5 19.8 318 474-833 71-393 (394)
172 1d2n_A N-ethylmaleimide-sensit 98.3 5E-06 1.7E-10 86.3 13.9 183 152-342 34-263 (272)
173 3eie_A Vacuolar protein sortin 98.3 2.3E-05 8E-10 83.3 18.9 171 148-321 15-227 (322)
174 3un9_A NLR family member X1; l 98.3 1.2E-07 4.2E-12 103.1 0.6 159 495-662 71-252 (372)
175 3pfi_A Holliday junction ATP-d 98.3 6E-06 2E-10 88.7 13.9 171 149-322 27-227 (338)
176 1xwi_A SKD1 protein; VPS4B, AA 98.3 2.8E-05 9.5E-10 82.5 18.5 172 149-322 10-223 (322)
177 1sxj_E Activator 1 40 kDa subu 98.3 3.1E-06 1.1E-10 91.7 11.3 173 149-322 12-237 (354)
178 3d8b_A Fidgetin-like protein 1 98.2 2.1E-05 7.1E-10 85.0 17.3 172 149-323 82-296 (357)
179 3bos_A Putative DNA replicatio 98.2 2E-06 7E-11 87.4 8.5 168 151-321 28-216 (242)
180 1sxj_A Activator 1 95 kDa subu 98.2 7.9E-06 2.7E-10 92.9 13.4 186 148-338 36-272 (516)
181 2qp9_X Vacuolar protein sortin 98.1 4.7E-05 1.6E-09 82.0 17.3 170 150-322 50-261 (355)
182 3te6_A Regulatory protein SIR3 98.1 2.8E-05 9.6E-10 81.3 14.6 141 152-292 21-212 (318)
183 3e4g_A ATP synthase subunit S, 98.1 9.1E-07 3.1E-11 83.6 3.0 92 746-844 62-155 (176)
184 3u61_B DNA polymerase accessor 98.1 1.3E-05 4.6E-10 85.4 12.2 171 148-320 23-214 (324)
185 3vfd_A Spastin; ATPase, microt 98.1 6.9E-05 2.4E-09 82.0 18.1 172 148-322 112-326 (389)
186 3b9p_A CG5977-PA, isoform A; A 98.1 8E-05 2.7E-09 78.2 17.8 171 149-322 19-233 (297)
187 3syl_A Protein CBBX; photosynt 98.1 8.2E-06 2.8E-10 86.4 10.2 141 152-292 32-218 (309)
188 2ra8_A Uncharacterized protein 98.1 4.4E-06 1.5E-10 89.9 7.5 137 514-660 166-318 (362)
189 2zan_A Vacuolar protein sortin 98.1 7.7E-05 2.6E-09 82.9 17.5 171 149-321 132-344 (444)
190 3uk6_A RUVB-like 2; hexameric 98.0 4E-05 1.4E-09 83.3 14.2 49 150-198 43-96 (368)
191 2p65_A Hypothetical protein PF 98.0 1.1E-05 3.8E-10 78.0 8.8 48 150-197 21-68 (187)
192 1sxj_C Activator 1 40 kDa subu 98.0 6.1E-05 2.1E-09 80.8 14.6 168 148-316 22-206 (340)
193 2z4s_A Chromosomal replication 98.0 3.6E-05 1.2E-09 85.4 12.9 187 150-340 104-332 (440)
194 2ra8_A Uncharacterized protein 98.0 4E-06 1.4E-10 90.3 4.9 67 609-680 135-201 (362)
195 4b4t_J 26S protease regulatory 98.0 0.0001 3.5E-09 79.0 15.6 164 148-315 145-354 (405)
196 3cf0_A Transitional endoplasmi 97.9 0.0001 3.6E-09 77.4 15.2 164 150-317 14-223 (301)
197 1a5t_A Delta prime, HOLB; zinc 97.9 6.8E-05 2.3E-09 80.1 13.9 160 156-321 7-204 (334)
198 4gt6_A Cell surface protein; l 97.9 0.00099 3.4E-08 72.9 23.2 296 497-838 65-367 (394)
199 3e4g_A ATP synthase subunit S, 97.9 8.8E-06 3E-10 76.8 5.5 84 520-603 61-154 (176)
200 4b4t_L 26S protease subunit RP 97.9 0.00017 5.8E-09 78.7 15.4 161 149-315 179-387 (437)
201 3pxg_A Negative regulator of g 97.8 9.9E-05 3.4E-09 82.6 13.4 139 150-292 179-339 (468)
202 4b4t_H 26S protease regulatory 97.8 0.00028 9.6E-09 76.6 16.3 162 150-315 208-415 (467)
203 4b4t_M 26S protease regulatory 97.8 0.00011 3.9E-09 79.9 12.8 163 147-315 177-387 (434)
204 4b4t_I 26S protease regulatory 97.8 0.00037 1.3E-08 74.9 16.3 164 148-315 179-388 (437)
205 1l8q_A Chromosomal replication 97.8 0.00014 4.7E-09 77.4 12.4 153 159-316 22-202 (324)
206 1io0_A Tropomodulin; LRR prote 97.7 1.6E-05 5.4E-10 77.0 3.5 110 515-625 31-163 (185)
207 1qvr_A CLPB protein; coiled co 97.7 0.00012 4.1E-09 88.6 11.8 141 149-291 168-345 (854)
208 1lv7_A FTSH; alpha/beta domain 97.7 0.00048 1.6E-08 70.5 14.3 167 149-319 10-222 (257)
209 4b4t_K 26S protease regulatory 97.7 0.0004 1.4E-08 75.6 14.0 162 148-315 169-379 (428)
210 1in4_A RUVB, holliday junction 97.6 0.00028 9.6E-09 75.3 12.7 171 148-321 22-222 (334)
211 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00041 1.4E-08 83.0 14.5 140 150-291 185-362 (758)
212 2ce7_A Cell division protein F 97.6 0.00094 3.2E-08 74.0 15.5 162 150-315 15-221 (476)
213 3pxi_A Negative regulator of g 97.5 0.00032 1.1E-08 83.8 12.6 139 150-292 179-339 (758)
214 3ec2_A DNA replication protein 97.5 4.7E-05 1.6E-09 73.3 4.0 103 156-260 19-143 (180)
215 2r62_A Cell division protease 97.5 0.00011 3.7E-09 75.9 7.1 141 150-292 10-197 (268)
216 3rw6_A Nuclear RNA export fact 97.5 7.7E-05 2.6E-09 76.0 5.7 59 519-577 169-232 (267)
217 3hu3_A Transitional endoplasmi 97.5 0.0012 4.1E-08 73.7 15.8 168 150-321 203-414 (489)
218 1io0_A Tropomodulin; LRR prote 97.5 5E-05 1.7E-09 73.4 3.7 105 494-598 34-161 (185)
219 3rw6_A Nuclear RNA export fact 97.5 0.00015 5.1E-09 73.9 6.8 79 540-619 167-257 (267)
220 3n70_A Transport activator; si 97.4 4.8E-05 1.6E-09 70.3 2.9 106 152-260 2-116 (145)
221 4h09_A Hypothetical leucine ri 97.4 0.0051 1.7E-07 66.8 19.6 122 494-622 44-167 (379)
222 2gno_A DNA polymerase III, gam 97.4 0.00047 1.6E-08 72.1 10.5 135 155-291 1-152 (305)
223 2w58_A DNAI, primosome compone 97.3 0.00021 7.3E-09 70.1 5.2 101 158-260 36-159 (202)
224 1ixz_A ATP-dependent metallopr 97.3 0.0057 1.9E-07 62.2 16.1 162 150-315 15-221 (254)
225 3co5_A Putative two-component 97.2 7.7E-05 2.6E-09 68.7 1.6 105 152-259 5-115 (143)
226 4fcw_A Chaperone protein CLPB; 97.2 0.00097 3.3E-08 70.3 9.5 83 152-234 18-131 (311)
227 4gt6_A Cell surface protein; l 97.1 0.0057 2E-07 66.8 15.7 293 493-836 84-386 (394)
228 1ofh_A ATP-dependent HSL prote 97.1 0.002 6.9E-08 67.7 11.5 136 152-289 16-213 (310)
229 1iy2_A ATP-dependent metallopr 97.1 0.0069 2.4E-07 62.5 15.1 163 149-315 38-245 (278)
230 3cf2_A TER ATPase, transitiona 97.0 0.0034 1.1E-07 73.8 12.4 162 150-315 203-407 (806)
231 2x8a_A Nuclear valosin-contain 96.9 0.0088 3E-07 61.4 13.1 142 150-292 9-192 (274)
232 3pxi_A Negative regulator of g 96.7 0.0023 7.8E-08 76.4 8.4 139 152-291 492-675 (758)
233 3m6a_A ATP-dependent protease 96.6 0.0064 2.2E-07 69.1 10.8 138 152-291 82-266 (543)
234 2bjv_A PSP operon transcriptio 96.6 0.0014 4.8E-08 67.3 4.8 47 151-197 6-54 (265)
235 2dhr_A FTSH; AAA+ protein, hex 96.6 0.019 6.7E-07 63.9 14.1 162 150-315 30-236 (499)
236 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0073 2.5E-07 72.1 11.1 81 152-234 459-569 (758)
237 2c9o_A RUVB-like 1; hexameric 96.3 0.0052 1.8E-07 68.5 7.6 85 150-234 36-138 (456)
238 1ojl_A Transcriptional regulat 96.3 0.0028 9.5E-08 66.4 4.9 45 152-196 3-49 (304)
239 3t15_A Ribulose bisphosphate c 96.3 0.0046 1.6E-07 64.3 6.3 60 172-233 36-110 (293)
240 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0085 2.9E-07 61.9 7.7 60 172-233 123-193 (331)
241 3fwy_A Light-independent proto 96.0 0.0063 2.1E-07 63.7 5.8 29 170-198 46-74 (314)
242 1ypw_A Transitional endoplasmi 95.9 0.03 1E-06 66.8 11.8 141 150-292 203-386 (806)
243 1qvr_A CLPB protein; coiled co 95.8 0.017 6E-07 69.6 9.0 46 152-197 559-613 (854)
244 1rz3_A Hypothetical protein rb 95.4 0.014 4.9E-07 56.7 5.5 42 156-197 3-47 (201)
245 3c8u_A Fructokinase; YP_612366 95.3 0.02 6.7E-07 56.1 6.0 40 158-197 6-47 (208)
246 1u0j_A DNA replication protein 95.2 0.065 2.2E-06 53.9 9.6 37 160-196 90-128 (267)
247 2qgz_A Helicase loader, putati 95.2 0.017 5.8E-07 60.4 5.6 42 156-197 133-177 (308)
248 1ex7_A Guanylate kinase; subst 94.7 0.018 6.2E-07 55.0 3.8 25 173-197 2-26 (186)
249 1jr3_D DNA polymerase III, del 94.6 0.12 4.1E-06 54.9 10.3 149 170-320 16-183 (343)
250 4h09_A Hypothetical leucine ri 94.6 0.12 4.1E-06 55.7 10.4 123 494-621 215-341 (379)
251 3end_A Light-independent proto 94.5 0.037 1.3E-06 57.9 5.8 30 169-198 38-67 (307)
252 2kjq_A DNAA-related protein; s 94.5 0.034 1.2E-06 51.1 4.8 89 164-259 28-124 (149)
253 1qhx_A CPT, protein (chloramph 94.4 0.022 7.5E-07 54.1 3.6 25 173-197 4-28 (178)
254 3kb2_A SPBC2 prophage-derived 94.4 0.022 7.6E-07 53.6 3.7 25 173-197 2-26 (173)
255 3vaa_A Shikimate kinase, SK; s 94.3 0.027 9.2E-07 54.7 4.0 27 171-197 24-50 (199)
256 1g8p_A Magnesium-chelatase 38 94.3 0.026 9E-07 60.2 4.3 50 148-197 21-70 (350)
257 3lw7_A Adenylate kinase relate 94.3 0.021 7.3E-07 53.9 3.1 20 173-192 2-21 (179)
258 1kgd_A CASK, peripheral plasma 94.3 0.024 8.4E-07 54.0 3.5 25 172-196 5-29 (180)
259 2hf9_A Probable hydrogenase ni 94.2 0.039 1.3E-06 54.6 5.0 39 159-197 25-63 (226)
260 2ga8_A Hypothetical 39.9 kDa p 94.2 0.056 1.9E-06 56.7 6.2 43 156-198 4-50 (359)
261 4eun_A Thermoresistant glucoki 94.2 0.031 1E-06 54.3 4.0 27 170-196 27-53 (200)
262 1zp6_A Hypothetical protein AT 94.2 0.028 9.6E-07 54.0 3.7 25 171-195 8-32 (191)
263 3uie_A Adenylyl-sulfate kinase 94.0 0.039 1.3E-06 53.6 4.5 29 169-197 22-50 (200)
264 1odf_A YGR205W, hypothetical 3 94.0 0.069 2.4E-06 55.0 6.4 29 170-198 29-57 (290)
265 3trf_A Shikimate kinase, SK; a 93.9 0.034 1.2E-06 53.1 3.8 26 172-197 5-30 (185)
266 1kag_A SKI, shikimate kinase I 93.9 0.026 8.9E-07 53.2 2.9 25 173-197 5-29 (173)
267 1ly1_A Polynucleotide kinase; 93.9 0.033 1.1E-06 52.8 3.7 22 173-194 3-24 (181)
268 1xjc_A MOBB protein homolog; s 93.9 0.042 1.4E-06 51.4 4.2 28 171-198 3-30 (169)
269 2wsm_A Hydrogenase expression/ 93.9 0.036 1.2E-06 54.7 4.0 42 156-197 14-55 (221)
270 2orw_A Thymidine kinase; TMTK, 93.8 0.024 8.2E-07 54.2 2.4 86 173-261 4-114 (184)
271 3cf2_A TER ATPase, transitiona 93.8 0.075 2.6E-06 62.4 6.9 81 151-233 477-581 (806)
272 3jvv_A Twitching mobility prot 93.7 0.066 2.3E-06 56.9 5.8 89 171-263 122-234 (356)
273 1nks_A Adenylate kinase; therm 93.6 0.043 1.5E-06 52.7 4.0 25 173-197 2-26 (194)
274 3tau_A Guanylate kinase, GMP k 93.5 0.044 1.5E-06 53.6 3.9 26 171-196 7-32 (208)
275 3tr0_A Guanylate kinase, GMP k 93.5 0.044 1.5E-06 53.3 3.9 24 172-195 7-30 (205)
276 1knq_A Gluconate kinase; ALFA/ 93.5 0.054 1.9E-06 51.1 4.4 25 172-196 8-32 (175)
277 3t61_A Gluconokinase; PSI-biol 93.5 0.034 1.2E-06 54.0 3.0 26 172-197 18-43 (202)
278 3dm5_A SRP54, signal recogniti 93.5 0.13 4.5E-06 55.9 7.8 28 171-198 99-126 (443)
279 3iij_A Coilin-interacting nucl 93.5 0.042 1.4E-06 52.2 3.5 26 172-197 11-36 (180)
280 2ze6_A Isopentenyl transferase 93.5 0.047 1.6E-06 55.2 4.0 25 173-197 2-26 (253)
281 1kht_A Adenylate kinase; phosp 93.4 0.048 1.6E-06 52.3 3.9 25 173-197 4-28 (192)
282 2rhm_A Putative kinase; P-loop 93.4 0.054 1.8E-06 52.0 4.2 26 172-197 5-30 (193)
283 2bdt_A BH3686; alpha-beta prot 93.4 0.046 1.6E-06 52.4 3.7 22 173-194 3-24 (189)
284 2r44_A Uncharacterized protein 93.4 0.043 1.5E-06 58.1 3.7 44 152-197 28-71 (331)
285 2qor_A Guanylate kinase; phosp 93.4 0.041 1.4E-06 53.6 3.3 26 171-196 11-36 (204)
286 3a00_A Guanylate kinase, GMP k 93.3 0.037 1.3E-06 53.0 2.9 25 173-197 2-26 (186)
287 2yvu_A Probable adenylyl-sulfa 93.3 0.063 2.2E-06 51.3 4.6 28 171-198 12-39 (186)
288 1zuh_A Shikimate kinase; alpha 93.3 0.049 1.7E-06 51.1 3.6 28 171-198 6-33 (168)
289 3hws_A ATP-dependent CLP prote 93.3 0.077 2.6E-06 56.9 5.6 45 153-197 17-76 (363)
290 1ye8_A Protein THEP1, hypothet 93.3 0.054 1.9E-06 51.4 3.9 25 174-198 2-26 (178)
291 3asz_A Uridine kinase; cytidin 93.3 0.05 1.7E-06 53.2 3.8 27 171-197 5-31 (211)
292 2j41_A Guanylate kinase; GMP, 93.2 0.053 1.8E-06 52.8 3.9 25 172-196 6-30 (207)
293 4gp7_A Metallophosphoesterase; 93.2 0.042 1.4E-06 51.8 3.0 23 171-193 8-30 (171)
294 2afh_E Nitrogenase iron protei 93.2 0.086 2.9E-06 54.5 5.6 27 172-198 2-28 (289)
295 1cp2_A CP2, nitrogenase iron p 93.2 0.082 2.8E-06 53.9 5.4 26 173-198 2-27 (269)
296 1via_A Shikimate kinase; struc 93.2 0.046 1.6E-06 51.7 3.2 25 173-197 5-29 (175)
297 3ney_A 55 kDa erythrocyte memb 93.1 0.058 2E-06 51.9 3.8 26 171-196 18-43 (197)
298 1lvg_A Guanylate kinase, GMP k 93.1 0.042 1.4E-06 53.2 2.9 25 172-196 4-28 (198)
299 1y63_A LMAJ004144AAA protein; 93.1 0.061 2.1E-06 51.4 4.0 25 171-195 9-33 (184)
300 2jaq_A Deoxyguanosine kinase; 93.1 0.056 1.9E-06 52.4 3.8 24 174-197 2-25 (205)
301 1uf9_A TT1252 protein; P-loop, 92.9 0.063 2.2E-06 52.0 3.9 26 170-195 6-31 (203)
302 1ukz_A Uridylate kinase; trans 92.9 0.072 2.5E-06 51.7 4.3 26 171-196 14-39 (203)
303 3p32_A Probable GTPase RV1496/ 92.9 0.18 6.2E-06 53.7 7.8 38 160-197 65-104 (355)
304 1cke_A CK, MSSA, protein (cyti 92.9 0.06 2.1E-06 53.3 3.8 25 173-197 6-30 (227)
305 2c95_A Adenylate kinase 1; tra 92.9 0.066 2.3E-06 51.5 4.0 26 172-197 9-34 (196)
306 1yrb_A ATP(GTP)binding protein 92.9 0.098 3.4E-06 53.1 5.5 27 171-197 13-39 (262)
307 1gvn_B Zeta; postsegregational 92.9 0.1 3.5E-06 53.8 5.6 26 171-196 32-57 (287)
308 1um8_A ATP-dependent CLP prote 92.9 0.095 3.2E-06 56.5 5.6 26 172-197 72-97 (376)
309 2qt1_A Nicotinamide riboside k 92.8 0.064 2.2E-06 52.3 3.8 24 171-194 20-43 (207)
310 3ice_A Transcription terminati 92.8 0.24 8.3E-06 52.3 8.2 36 162-197 163-199 (422)
311 1zu4_A FTSY; GTPase, signal re 92.8 0.11 3.9E-06 54.2 5.9 28 171-198 104-131 (320)
312 2if2_A Dephospho-COA kinase; a 92.8 0.057 1.9E-06 52.5 3.4 22 173-194 2-23 (204)
313 2iyv_A Shikimate kinase, SK; t 92.8 0.049 1.7E-06 51.9 2.8 25 173-197 3-27 (184)
314 3aez_A Pantothenate kinase; tr 92.7 0.069 2.3E-06 55.7 4.1 28 170-197 88-115 (312)
315 1znw_A Guanylate kinase, GMP k 92.7 0.067 2.3E-06 52.2 3.7 26 171-196 19-44 (207)
316 3rfe_A Platelet glycoprotein I 92.7 0.16 5.4E-06 45.2 5.8 14 524-537 12-27 (130)
317 1sky_E F1-ATPase, F1-ATP synth 92.7 0.18 6.1E-06 55.1 7.3 27 172-198 151-177 (473)
318 1tev_A UMP-CMP kinase; ploop, 92.7 0.076 2.6E-06 51.0 4.1 26 172-197 3-28 (196)
319 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.073 2.5E-06 54.1 4.1 25 172-196 4-28 (260)
320 3rfe_A Platelet glycoprotein I 92.7 0.18 6.1E-06 44.9 6.2 54 569-625 12-67 (130)
321 2j37_W Signal recognition part 92.7 0.25 8.4E-06 55.0 8.6 43 171-234 100-142 (504)
322 2px0_A Flagellar biosynthesis 92.6 0.14 4.7E-06 53.0 6.2 27 171-197 104-130 (296)
323 3cm0_A Adenylate kinase; ATP-b 92.6 0.077 2.6E-06 50.6 4.0 26 172-197 4-29 (186)
324 2xxa_A Signal recognition part 92.6 0.2 6.9E-06 54.7 7.7 28 171-198 99-126 (433)
325 1vma_A Cell division protein F 92.6 0.13 4.3E-06 53.4 5.8 28 171-198 103-130 (306)
326 1htw_A HI0065; nucleotide-bind 92.6 0.084 2.9E-06 48.9 4.0 27 170-196 31-57 (158)
327 2bbw_A Adenylate kinase 4, AK4 92.6 0.076 2.6E-06 53.4 4.0 26 172-197 27-52 (246)
328 2plr_A DTMP kinase, probable t 92.6 0.082 2.8E-06 51.6 4.2 27 172-198 4-30 (213)
329 1z6g_A Guanylate kinase; struc 92.5 0.06 2.1E-06 53.0 3.2 25 171-195 22-46 (218)
330 1e6c_A Shikimate kinase; phosp 92.5 0.06 2.1E-06 50.6 3.1 25 173-197 3-27 (173)
331 2bwj_A Adenylate kinase 5; pho 92.5 0.07 2.4E-06 51.5 3.5 26 172-197 12-37 (199)
332 1rj9_A FTSY, signal recognitio 92.4 0.09 3.1E-06 54.6 4.4 28 171-198 101-128 (304)
333 2vli_A Antibiotic resistance p 92.4 0.061 2.1E-06 51.2 2.9 26 172-197 5-30 (183)
334 3nbx_X ATPase RAVA; AAA+ ATPas 92.4 0.071 2.4E-06 59.4 3.8 44 152-197 23-66 (500)
335 3tqc_A Pantothenate kinase; bi 92.3 0.12 4.1E-06 53.9 5.2 27 171-197 91-117 (321)
336 2f1r_A Molybdopterin-guanine d 92.3 0.057 1.9E-06 50.8 2.5 27 172-198 2-28 (171)
337 1jjv_A Dephospho-COA kinase; P 92.3 0.075 2.6E-06 51.7 3.5 22 173-194 3-24 (206)
338 2jeo_A Uridine-cytidine kinase 92.3 0.087 3E-06 52.9 4.1 27 170-196 23-49 (245)
339 1s96_A Guanylate kinase, GMP k 92.3 0.08 2.7E-06 52.1 3.7 27 171-197 15-41 (219)
340 1qf9_A UMP/CMP kinase, protein 92.3 0.082 2.8E-06 50.7 3.7 26 172-197 6-31 (194)
341 3io3_A DEHA2D07832P; chaperone 92.3 0.13 4.6E-06 54.3 5.6 31 167-197 13-43 (348)
342 4e22_A Cytidylate kinase; P-lo 92.3 0.086 3E-06 53.2 4.0 27 171-197 26-52 (252)
343 2pt5_A Shikimate kinase, SK; a 92.2 0.084 2.9E-06 49.3 3.7 24 174-197 2-25 (168)
344 3e70_C DPA, signal recognition 92.2 0.17 5.9E-06 53.0 6.3 29 170-198 127-155 (328)
345 3kl4_A SRP54, signal recogniti 92.2 0.24 8.3E-06 53.8 7.6 28 171-198 96-123 (433)
346 3umf_A Adenylate kinase; rossm 92.2 0.11 3.6E-06 51.0 4.3 28 170-197 27-54 (217)
347 2cdn_A Adenylate kinase; phosp 92.1 0.09 3.1E-06 50.9 3.8 26 172-197 20-45 (201)
348 1np6_A Molybdopterin-guanine d 92.1 0.11 3.6E-06 49.0 4.1 26 172-197 6-31 (174)
349 3hr8_A Protein RECA; alpha and 92.1 0.26 8.8E-06 52.2 7.5 26 172-197 61-86 (356)
350 2grj_A Dephospho-COA kinase; T 92.0 0.1 3.4E-06 50.2 3.9 25 171-195 11-35 (192)
351 1aky_A Adenylate kinase; ATP:A 92.0 0.1 3.4E-06 51.4 4.0 26 172-197 4-29 (220)
352 2pbr_A DTMP kinase, thymidylat 92.0 0.096 3.3E-06 50.2 3.8 24 174-197 2-25 (195)
353 2p5t_B PEZT; postsegregational 92.0 0.13 4.4E-06 51.9 4.9 27 171-197 31-57 (253)
354 2wwf_A Thymidilate kinase, put 91.9 0.11 3.6E-06 50.8 4.1 27 172-198 10-36 (212)
355 1gtv_A TMK, thymidylate kinase 91.9 0.057 1.9E-06 52.9 2.1 24 174-197 2-25 (214)
356 1nn5_A Similar to deoxythymidy 91.9 0.11 3.8E-06 50.8 4.2 27 172-198 9-35 (215)
357 3tlx_A Adenylate kinase 2; str 91.8 0.2 6.8E-06 50.2 6.1 28 170-197 27-54 (243)
358 1uj2_A Uridine-cytidine kinase 91.8 0.1 3.6E-06 52.6 3.9 28 170-197 20-47 (252)
359 2i3b_A HCR-ntpase, human cance 91.7 0.095 3.2E-06 50.2 3.4 25 173-197 2-26 (189)
360 3iqw_A Tail-anchored protein t 91.7 0.16 5.5E-06 53.4 5.4 31 168-198 12-42 (334)
361 1tue_A Replication protein E1; 91.7 0.15 5E-06 48.9 4.6 69 160-234 45-115 (212)
362 1m7g_A Adenylylsulfate kinase; 91.7 0.13 4.5E-06 50.2 4.4 28 170-197 23-50 (211)
363 3k1j_A LON protease, ATP-depen 91.7 0.11 3.6E-06 60.0 4.3 48 148-197 38-85 (604)
364 1zd8_A GTP:AMP phosphotransfer 91.6 0.1 3.4E-06 51.8 3.6 26 172-197 7-32 (227)
365 3fb4_A Adenylate kinase; psych 91.6 0.11 3.8E-06 50.9 3.8 24 174-197 2-25 (216)
366 2pez_A Bifunctional 3'-phospho 91.5 0.12 4.2E-06 48.9 3.9 26 172-197 5-30 (179)
367 4dzz_A Plasmid partitioning pr 91.5 0.18 6.1E-06 48.8 5.2 26 173-198 2-28 (206)
368 1zak_A Adenylate kinase; ATP:A 91.5 0.1 3.6E-06 51.4 3.5 26 172-197 5-30 (222)
369 1j8m_F SRP54, signal recogniti 91.5 0.31 1E-05 50.4 7.1 27 172-198 98-124 (297)
370 2z0h_A DTMP kinase, thymidylat 91.4 0.11 3.9E-06 49.8 3.7 24 174-197 2-25 (197)
371 3b9q_A Chloroplast SRP recepto 91.4 0.14 4.9E-06 53.0 4.6 28 171-198 99-126 (302)
372 2onk_A Molybdate/tungstate ABC 91.4 0.11 3.6E-06 52.0 3.5 25 170-195 23-47 (240)
373 1ls1_A Signal recognition part 91.4 0.2 6.9E-06 51.7 5.7 28 171-198 97-124 (295)
374 3nwj_A ATSK2; P loop, shikimat 91.3 0.092 3.1E-06 52.8 2.9 26 172-197 48-73 (250)
375 4a74_A DNA repair and recombin 91.2 0.11 3.7E-06 51.4 3.4 26 172-197 25-50 (231)
376 3dl0_A Adenylate kinase; phosp 91.2 0.12 4.2E-06 50.6 3.7 23 174-196 2-24 (216)
377 2v54_A DTMP kinase, thymidylat 91.2 0.13 4.3E-06 49.9 3.7 25 172-196 4-28 (204)
378 3kjh_A CO dehydrogenase/acetyl 91.2 0.14 4.9E-06 51.4 4.3 24 175-198 3-26 (254)
379 1ypw_A Transitional endoplasmi 91.2 0.057 2E-06 64.3 1.4 81 151-233 477-581 (806)
380 3d3q_A TRNA delta(2)-isopenten 91.2 0.13 4.4E-06 53.9 3.9 25 173-197 8-32 (340)
381 2zts_A Putative uncharacterize 91.1 0.29 1E-05 49.0 6.6 24 172-195 30-53 (251)
382 3b85_A Phosphate starvation-in 91.1 0.1 3.5E-06 50.8 2.9 24 172-195 22-45 (208)
383 2ehv_A Hypothetical protein PH 91.1 0.11 3.7E-06 52.2 3.3 23 172-194 30-52 (251)
384 3tif_A Uncharacterized ABC tra 91.1 0.12 4.1E-06 51.4 3.5 25 171-195 30-54 (235)
385 1vht_A Dephospho-COA kinase; s 91.1 0.14 4.9E-06 50.2 4.1 23 172-194 4-26 (218)
386 3r20_A Cytidylate kinase; stru 91.1 0.14 4.7E-06 50.7 3.8 26 172-197 9-34 (233)
387 1sq5_A Pantothenate kinase; P- 91.0 0.13 4.6E-06 53.5 3.9 28 170-197 78-105 (308)
388 2yhs_A FTSY, cell division pro 91.0 0.26 8.7E-06 54.2 6.2 28 171-198 292-319 (503)
389 3l0o_A Transcription terminati 91.0 0.45 1.5E-05 50.2 7.7 37 161-197 163-200 (427)
390 2f6r_A COA synthase, bifunctio 90.9 0.13 4.6E-06 52.7 3.7 23 171-193 74-96 (281)
391 1g41_A Heat shock protein HSLU 90.9 0.14 4.8E-06 55.7 4.0 47 152-198 16-76 (444)
392 3lnc_A Guanylate kinase, GMP k 90.9 0.09 3.1E-06 52.2 2.3 25 172-196 27-52 (231)
393 2pcj_A ABC transporter, lipopr 90.8 0.1 3.5E-06 51.5 2.7 24 172-195 30-53 (224)
394 2v3c_C SRP54, signal recogniti 90.8 0.15 5.1E-06 55.7 4.2 27 172-198 99-125 (432)
395 1pgv_A TMD-1, tropomodulin TMD 90.7 0.16 5.4E-06 48.7 3.8 82 517-598 38-136 (197)
396 2cbz_A Multidrug resistance-as 90.7 0.12 4.2E-06 51.4 3.2 25 171-195 30-54 (237)
397 2r8r_A Sensor protein; KDPD, P 90.7 0.25 8.4E-06 48.3 5.1 25 174-198 8-32 (228)
398 3fkq_A NTRC-like two-domain pr 90.7 0.26 8.8E-06 53.0 5.9 28 170-197 141-169 (373)
399 2zr9_A Protein RECA, recombina 90.6 0.37 1.3E-05 51.0 6.9 26 172-197 61-86 (349)
400 3ake_A Cytidylate kinase; CMP 90.6 0.16 5.5E-06 49.3 3.8 24 174-197 4-27 (208)
401 1b0u_A Histidine permease; ABC 90.5 0.13 4.5E-06 52.1 3.1 25 171-195 31-55 (262)
402 3crm_A TRNA delta(2)-isopenten 90.5 0.16 5.5E-06 52.7 3.8 25 173-197 6-30 (323)
403 2og2_A Putative signal recogni 90.4 0.2 6.8E-06 53.1 4.6 28 171-198 156-183 (359)
404 1a7j_A Phosphoribulokinase; tr 90.4 0.12 4.2E-06 53.3 2.9 27 171-197 4-30 (290)
405 3bfv_A CAPA1, CAPB2, membrane 90.4 0.48 1.6E-05 48.2 7.3 30 169-198 79-109 (271)
406 2d2e_A SUFC protein; ABC-ATPas 90.3 0.15 5E-06 51.4 3.3 24 172-195 29-52 (250)
407 2cvh_A DNA repair and recombin 90.3 0.16 5.6E-06 49.7 3.6 23 172-194 20-42 (220)
408 3io5_A Recombination and repai 90.2 0.55 1.9E-05 48.3 7.5 24 174-197 30-53 (333)
409 3gfo_A Cobalt import ATP-bindi 90.2 0.14 4.8E-06 52.2 3.1 24 172-195 34-57 (275)
410 2olj_A Amino acid ABC transpor 90.2 0.14 4.8E-06 51.8 3.1 25 171-195 49-73 (263)
411 2xb4_A Adenylate kinase; ATP-b 90.2 0.18 6.1E-06 49.8 3.8 24 174-197 2-25 (223)
412 3be4_A Adenylate kinase; malar 90.2 0.17 5.9E-06 49.6 3.7 25 173-197 6-30 (217)
413 2zu0_C Probable ATP-dependent 90.2 0.17 5.7E-06 51.5 3.6 25 171-195 45-69 (267)
414 1e4v_A Adenylate kinase; trans 90.2 0.18 6E-06 49.4 3.7 24 174-197 2-25 (214)
415 1mv5_A LMRA, multidrug resista 90.2 0.15 5.3E-06 51.0 3.3 26 171-196 27-52 (243)
416 3exa_A TRNA delta(2)-isopenten 90.1 0.17 5.9E-06 52.0 3.7 25 172-196 3-27 (322)
417 1ak2_A Adenylate kinase isoenz 90.1 0.21 7E-06 49.7 4.2 27 172-198 16-42 (233)
418 1ji0_A ABC transporter; ATP bi 90.0 0.14 4.7E-06 51.2 2.8 24 172-195 32-55 (240)
419 2pze_A Cystic fibrosis transme 90.0 0.14 4.7E-06 50.8 2.8 24 172-195 34-57 (229)
420 1oix_A RAS-related protein RAB 90.0 0.17 5.8E-06 48.5 3.4 25 172-196 29-53 (191)
421 2v9p_A Replication protein E1; 90.0 0.18 6.2E-06 52.1 3.7 27 170-196 124-150 (305)
422 1sgw_A Putative ABC transporte 89.9 0.12 4.1E-06 50.6 2.2 24 172-195 35-58 (214)
423 1g6h_A High-affinity branched- 89.9 0.14 4.8E-06 51.8 2.8 24 172-195 33-56 (257)
424 4g1u_C Hemin import ATP-bindin 89.9 0.16 5.3E-06 51.7 3.1 25 171-195 36-60 (266)
425 1wcv_1 SOJ, segregation protei 89.9 0.22 7.6E-06 50.3 4.3 29 170-198 4-33 (257)
426 2ff7_A Alpha-hemolysin translo 89.9 0.14 4.9E-06 51.3 2.8 25 172-196 35-59 (247)
427 2eyu_A Twitching motility prot 89.8 0.21 7.1E-06 50.6 4.0 28 170-197 23-50 (261)
428 3sr0_A Adenylate kinase; phosp 89.8 0.21 7.1E-06 48.5 3.8 25 174-198 2-26 (206)
429 1vpl_A ABC transporter, ATP-bi 89.8 0.16 5.5E-06 51.2 3.1 25 171-195 40-64 (256)
430 2ghi_A Transport protein; mult 89.8 0.16 5.5E-06 51.4 3.2 25 171-195 45-69 (260)
431 2ixe_A Antigen peptide transpo 89.8 0.16 5.6E-06 51.7 3.2 26 171-196 44-69 (271)
432 2dyk_A GTP-binding protein; GT 89.8 0.21 7.3E-06 45.8 3.8 23 173-195 2-24 (161)
433 2w0m_A SSO2452; RECA, SSPF, un 89.8 0.21 7.1E-06 49.4 3.9 26 172-197 23-48 (235)
434 1u94_A RECA protein, recombina 89.7 0.52 1.8E-05 50.0 7.1 26 172-197 63-88 (356)
435 3cio_A ETK, tyrosine-protein k 89.7 0.58 2E-05 48.4 7.4 30 169-198 101-131 (299)
436 3foz_A TRNA delta(2)-isopenten 89.6 0.21 7.2E-06 51.3 3.8 27 171-197 9-35 (316)
437 2ffh_A Protein (FFH); SRP54, s 89.6 0.33 1.1E-05 52.6 5.7 28 171-198 97-124 (425)
438 2yz2_A Putative ABC transporte 89.5 0.18 6.1E-06 51.3 3.2 25 171-195 32-56 (266)
439 2qi9_C Vitamin B12 import ATP- 89.4 0.16 5.6E-06 50.9 2.8 24 172-195 26-49 (249)
440 1byi_A Dethiobiotin synthase; 89.4 0.36 1.2E-05 47.4 5.3 26 173-198 2-28 (224)
441 3a8t_A Adenylate isopentenyltr 89.4 0.23 7.8E-06 51.8 3.9 25 172-196 40-64 (339)
442 2woj_A ATPase GET3; tail-ancho 89.3 0.35 1.2E-05 51.4 5.5 28 170-197 16-43 (354)
443 1pgv_A TMD-1, tropomodulin TMD 89.3 0.39 1.4E-05 45.9 5.2 112 540-658 38-166 (197)
444 2f9l_A RAB11B, member RAS onco 89.2 0.22 7.5E-06 48.0 3.5 24 172-195 5-28 (199)
445 2ged_A SR-beta, signal recogni 89.2 0.4 1.4E-05 45.7 5.4 25 171-195 47-71 (193)
446 3sop_A Neuronal-specific septi 89.2 0.2 6.9E-06 50.9 3.4 24 174-197 4-27 (270)
447 2nq2_C Hypothetical ABC transp 89.2 0.17 5.9E-06 50.9 2.8 24 172-195 31-54 (253)
448 2wji_A Ferrous iron transport 89.2 0.23 7.9E-06 46.1 3.5 22 173-194 4-25 (165)
449 2ihy_A ABC transporter, ATP-bi 89.2 0.17 5.9E-06 51.7 2.8 26 171-196 46-71 (279)
450 1ltq_A Polynucleotide kinase; 89.1 0.22 7.5E-06 51.7 3.7 23 173-195 3-25 (301)
451 2oze_A ORF delta'; para, walke 89.1 0.29 9.8E-06 50.7 4.5 27 172-198 34-63 (298)
452 1n0w_A DNA repair protein RAD5 89.0 0.2 6.9E-06 49.9 3.2 25 172-196 24-48 (243)
453 1g5t_A COB(I)alamin adenosyltr 89.0 0.69 2.3E-05 44.0 6.6 48 214-261 112-164 (196)
454 3zq6_A Putative arsenical pump 88.9 0.39 1.3E-05 50.4 5.4 26 173-198 15-40 (324)
455 3ug7_A Arsenical pump-driving 88.8 0.45 1.5E-05 50.4 5.9 27 172-198 26-52 (349)
456 4eaq_A DTMP kinase, thymidylat 88.8 0.31 1.1E-05 48.2 4.4 28 171-198 25-52 (229)
457 1svm_A Large T antigen; AAA+ f 88.8 0.25 8.6E-06 52.8 3.8 28 170-197 167-194 (377)
458 2zej_A Dardarin, leucine-rich 88.7 0.21 7E-06 47.4 2.9 21 174-194 4-24 (184)
459 1nlf_A Regulatory protein REPA 88.7 0.21 7.1E-06 51.2 3.1 25 172-196 30-54 (279)
460 1cr0_A DNA primase/helicase; R 88.7 0.29 1E-05 50.6 4.3 28 171-198 34-61 (296)
461 1q3t_A Cytidylate kinase; nucl 88.7 0.3 1E-05 48.6 4.2 27 171-197 15-41 (236)
462 2woo_A ATPase GET3; tail-ancho 88.6 0.45 1.5E-05 50.0 5.7 30 169-198 16-45 (329)
463 3pg5_A Uncharacterized protein 88.6 0.26 9E-06 52.6 3.9 25 173-197 2-27 (361)
464 3q9l_A Septum site-determining 88.6 0.46 1.6E-05 47.9 5.6 26 173-198 3-29 (260)
465 1nij_A Hypothetical protein YJ 88.5 0.23 8E-06 51.9 3.4 25 171-195 3-27 (318)
466 2ce2_X GTPase HRAS; signaling 88.4 0.24 8.3E-06 45.5 3.1 22 174-195 5-26 (166)
467 1xp8_A RECA protein, recombina 88.4 0.72 2.4E-05 49.1 7.0 26 172-197 74-99 (366)
468 1g8f_A Sulfate adenylyltransfe 88.4 0.46 1.6E-05 52.8 5.7 45 154-198 375-421 (511)
469 3nh6_A ATP-binding cassette SU 88.3 0.2 6.9E-06 51.8 2.6 26 171-196 79-104 (306)
470 1z2a_A RAS-related protein RAB 88.2 0.27 9.1E-06 45.5 3.3 23 173-195 6-28 (168)
471 3ea0_A ATPase, para family; al 88.2 0.51 1.7E-05 47.0 5.6 28 171-198 3-31 (245)
472 2pjz_A Hypothetical protein ST 88.2 0.22 7.5E-06 50.4 2.8 24 172-195 30-53 (263)
473 3eph_A TRNA isopentenyltransfe 88.2 0.3 1E-05 52.2 3.9 25 173-197 3-27 (409)
474 3la6_A Tyrosine-protein kinase 88.1 0.84 2.9E-05 46.7 7.2 30 169-198 89-119 (286)
475 2vp4_A Deoxynucleoside kinase; 88.1 0.2 6.9E-06 49.7 2.5 25 171-195 19-43 (230)
476 3fvq_A Fe(3+) IONS import ATP- 88.1 0.28 9.5E-06 51.9 3.5 26 171-196 29-54 (359)
477 3con_A GTPase NRAS; structural 88.0 0.27 9.4E-06 46.7 3.3 23 173-195 22-44 (190)
478 1tq4_A IIGP1, interferon-induc 88.0 0.31 1.1E-05 52.6 4.0 24 171-194 68-91 (413)
479 3cwq_A Para family chromosome 88.0 0.49 1.7E-05 46.0 5.1 25 174-198 2-27 (209)
480 2bbs_A Cystic fibrosis transme 87.9 0.25 8.5E-06 50.8 3.0 25 171-195 63-87 (290)
481 3tui_C Methionine import ATP-b 87.9 0.3 1E-05 51.7 3.6 26 171-196 53-78 (366)
482 2xj4_A MIPZ; replication, cell 87.9 0.45 1.6E-05 48.9 5.1 26 173-198 5-31 (286)
483 2qmh_A HPR kinase/phosphorylas 87.8 0.3 1E-05 46.5 3.3 23 172-194 34-56 (205)
484 2ocp_A DGK, deoxyguanosine kin 87.8 0.35 1.2E-05 48.3 4.0 25 172-196 2-26 (241)
485 2wjg_A FEOB, ferrous iron tran 87.6 0.32 1.1E-05 46.1 3.5 23 173-195 8-30 (188)
486 3k9g_A PF-32 protein; ssgcid, 87.6 0.48 1.7E-05 48.0 5.0 29 169-197 24-53 (267)
487 1r8s_A ADP-ribosylation factor 87.5 0.33 1.1E-05 44.7 3.4 21 175-195 3-23 (164)
488 2p67_A LAO/AO transport system 87.4 0.75 2.6E-05 48.6 6.5 29 169-197 53-81 (341)
489 1g3q_A MIND ATPase, cell divis 87.4 0.61 2.1E-05 46.2 5.6 26 173-198 3-29 (237)
490 1z47_A CYSA, putative ABC-tran 87.4 0.3 1E-05 51.6 3.3 25 171-195 40-64 (355)
491 1u8z_A RAS-related protein RAL 87.4 0.32 1.1E-05 44.8 3.3 23 173-195 5-27 (168)
492 3ez2_A Plasmid partition prote 87.3 0.93 3.2E-05 49.1 7.4 28 170-197 106-134 (398)
493 4gzl_A RAS-related C3 botulinu 87.3 0.36 1.2E-05 46.7 3.7 36 160-195 18-53 (204)
494 3cr8_A Sulfate adenylyltranfer 87.3 0.49 1.7E-05 53.3 5.2 27 171-197 368-394 (552)
495 2yyz_A Sugar ABC transporter, 87.3 0.34 1.2E-05 51.3 3.7 26 171-196 28-53 (359)
496 1c1y_A RAS-related protein RAP 87.3 0.33 1.1E-05 44.8 3.3 22 174-195 5-26 (167)
497 3kta_A Chromosome segregation 87.3 0.32 1.1E-05 46.0 3.2 24 173-196 27-50 (182)
498 3upu_A ATP-dependent DNA helic 87.2 0.69 2.4E-05 51.2 6.4 43 156-199 30-72 (459)
499 1nrj_B SR-beta, signal recogni 87.2 0.38 1.3E-05 46.9 3.9 27 170-196 10-36 (218)
500 2dr3_A UPF0273 protein PH0284; 87.2 0.35 1.2E-05 48.2 3.7 25 172-196 23-47 (247)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.7e-44 Score=411.95 Aligned_cols=283 Identities=13% Similarity=0.105 Sum_probs=212.7
Q ss_pred ccchHHHHHHHHHhcC---CCceEEEEEcCCCCcHhHHHHHHHH--HHhhccccc--------ccc---h----------
Q 038510 154 ESRKSTFKEILDALSN---RDFNMIGVYGMGGIGKTTLVKEVGR--QAKENNLFE--------KSH---E---------- 207 (871)
Q Consensus 154 ~gr~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~--------~~~---~---------- 207 (871)
+||++++++|.++|.. .+.++|+|+||||+||||||+++|+ +.+++.+|+ ... .
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 4999999999999973 3689999999999999999999999 567777887 100 0
Q ss_pred ------------------hhHHHHHHHHHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcchhccccCC
Q 038510 208 ------------------TVRAGRLLERLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVLSCKMDC 269 (871)
Q Consensus 208 ------------------~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~~~~~~ 269 (871)
......+.+.+..+|||||||||||+.+++ .+ + ..+||+||||||++.++......
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c-ccCCCEEEEEcCCHHHHHHcCCC
Confidence 011345556666324999999999998754 11 1 12799999999999997522224
Q ss_pred cceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhcCCCCCCcc
Q 038510 270 QQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPSFRNIS 349 (871)
Q Consensus 270 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~~~~~~~~~ 349 (871)
..+|++++|+.++||+||.+.++....++.+++++++|+++|+|+||||+++|+.|+.++ .+|.+.+....+..
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~----- 358 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR----- 358 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH-----
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc-----
Confidence 468999999999999999999986655578899999999999999999999999998764 23333333211100
Q ss_pred chhhhhheecccccccCChhhHHHHHH-----------hhcccc-cchhhhHHHHhhcc--cccccccchHHHHHHHHHH
Q 038510 350 GTLEVAYKSIELSYNHLNREELKRTFL-----------LIGYAF-ISCVKDVLYHGMGL--GLFQNINTSEEAWDRAHTL 415 (871)
Q Consensus 350 ~~~~~~~~~l~~sy~~L~~~~lk~cfl-----------~~s~fp-~~~~~~li~~w~ae--g~i~~~~~~~~~~~~~~~~ 415 (871)
....+.+++.+||++||++ +|.||+ |||+|| ++... ++.|+|+ ||+.........++.++ +
T Consensus 359 -~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~ 433 (549)
T 2a5y_B 359 -GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-R 433 (549)
T ss_dssp -CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-H
T ss_pred -cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-H
Confidence 1256889999999999998 999999 999999 65555 8999999 99975331112233344 8
Q ss_pred HHHHHHhcccccCC--CccceehhHHHHHHHHHHhcCCce
Q 038510 416 VDKLKKSCLLVDGN--TSERFSMHDVVRDAAISIASGDQH 453 (871)
Q Consensus 416 ~~~L~~~~l~~~~~--~~~~~~~Hdlv~d~a~~~~~~e~~ 453 (871)
|++|+++||++... ...+|+|||+|||||+.++.+++.
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999999998652 446799999999999999887653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.7e-36 Score=382.29 Aligned_cols=282 Identities=22% Similarity=0.315 Sum_probs=222.0
Q ss_pred cCCccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhh-ccccc---------ccc--------
Q 038510 147 TQDFMHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE-NNLFE---------KSH-------- 206 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~---------~~~-------- 206 (871)
+.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. ..+|. ...
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 4455679999999999999995 467899999999999999999999988654 33343 000
Q ss_pred --------------------hhhHHHHHHHHHHc-CCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcchhcc
Q 038510 207 --------------------ETVRAGRLLERLKK-EKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVLSC 265 (871)
Q Consensus 207 --------------------~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~~ 265 (871)
.......+...+.. ++|+||||||||+...|+.+ ++||+||||||++.++..
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~ 272 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDS 272 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTT
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHh
Confidence 01112223333321 34999999999998777654 578999999999999744
Q ss_pred ccCCcceeeccC-CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhcCCC
Q 038510 266 KMDCQQNFFVDV-LNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRPS 344 (871)
Q Consensus 266 ~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~~~~ 344 (871)
.+.....+.+++ |++++|++||...++.. .+.+++++++|+++|+|+||||+++|++|+.++ ..|...++.+....
T Consensus 273 ~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 273 VMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCC
T ss_pred hcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhh
Confidence 456678899996 99999999999998643 344567799999999999999999999999876 57999998886544
Q ss_pred CCCc----cchhhhhheecccccccCChhhHHHHHHhhcccc---cchhhhHHHHhhcccccccccchHHHHHHHHHHHH
Q 038510 345 FRNI----SGTLEVAYKSIELSYNHLNREELKRTFLLIGYAF---ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLVD 417 (871)
Q Consensus 345 ~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp---~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~~ 417 (871)
.... ......+..+|.+||+.||++ .|.||+|||+|| .|+.+.+++.|.+++ +.++++++
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~ 416 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQ 416 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHH
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHH
Confidence 3221 122357999999999999998 899999999999 688899999997763 34567899
Q ss_pred HHHHhcccccCC--CccceehhHHHHHHHHHHhcCC
Q 038510 418 KLKKSCLLVDGN--TSERFSMHDVVRDAAISIASGD 451 (871)
Q Consensus 418 ~L~~~~l~~~~~--~~~~~~~Hdlv~d~a~~~~~~e 451 (871)
+|+++||++... ...+|+|||+||+||+..+.++
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999999997542 3346999999999999998765
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.9e-35 Score=343.46 Aligned_cols=251 Identities=19% Similarity=0.173 Sum_probs=198.6
Q ss_pred cccchHHHHHHHHHhcC-CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc---------c-ch--------------
Q 038510 153 FESRKSTFKEILDALSN-RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK---------S-HE-------------- 207 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~---------~-~~-------------- 207 (871)
.+||++++++|.++|.+ ++.++|+|+||||+||||||+++|++.+++.+|+. . ..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999874 55899999999999999999999998777777761 0 00
Q ss_pred ------------------hhHHHHHHHHHH--cCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcchhcccc
Q 038510 208 ------------------TVRAGRLLERLK--KEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVLSCKM 267 (871)
Q Consensus 208 ------------------~~~~~~l~~~l~--~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~~~~ 267 (871)
....+.+.+.+. .+||+||||||||+.+.|+.+ + +||+||||||++.++. .+
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~---pGSRILVTTRd~~Va~-~l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----N---LSCKILLTTRFKQVTD-FL 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----H---SSCCEEEECSCSHHHH-HH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh----C---CCeEEEEeccChHHHH-hc
Confidence 001122333331 368999999999998888764 2 6899999999999863 22
Q ss_pred CCcceeecc------CCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcC--ChhHHHHHHHH
Q 038510 268 DCQQNFFVD------VLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINK--RLFEWKDSLLE 339 (871)
Q Consensus 268 ~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~--~~~~w~~~~~~ 339 (871)
.....|.++ +|+.+|||+||.+..+.. ..++..+| |+|+||||+++|+.|+++ +.++|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 333467777 999999999999986432 12333444 999999999999999977 77889753
Q ss_pred hcCCCCCCccchhhhhheecccccccCChhhH-HHHHHhhcccc---cchhhhHHHHhhcccccccccchHHHHHHHHHH
Q 038510 340 LRRPSFRNISGTLEVAYKSIELSYNHLNREEL-KRTFLLIGYAF---ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTL 415 (871)
Q Consensus 340 l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~cfl~~s~fp---~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~ 415 (871)
+ ...+..+|.+||+.||++ . |+||+|||+|| .|+.+.++.+|+++|. +.+..+
T Consensus 351 -------~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~ 407 (1221)
T 1vt4_I 351 -------N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVV 407 (1221)
T ss_dssp -------S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHH
T ss_pred -------C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHH
Confidence 1 267889999999999998 7 99999999999 5777889999999871 135678
Q ss_pred HHHHHHhcccccCCCccceehhHHHHHHHH
Q 038510 416 VDKLKKSCLLVDGNTSERFSMHDVVRDAAI 445 (871)
Q Consensus 416 ~~~L~~~~l~~~~~~~~~~~~Hdlv~d~a~ 445 (871)
+++|+++||++..+...+|+|||++++++.
T Consensus 408 L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 408 VNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 999999999987656678999999999663
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=9.6e-32 Score=315.86 Aligned_cols=277 Identities=23% Similarity=0.342 Sum_probs=210.2
Q ss_pred CCccccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhh-ccccc---------ccch--------
Q 038510 148 QDFMHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE-NNLFE---------KSHE-------- 207 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~---------~~~~-------- 207 (871)
.....|+||+.++++|.+++. .++.++|+|+||||+||||||+++|++.+. ..+|. ..+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~ 200 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQ 200 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHH
Confidence 344579999999999999997 356899999999999999999999987654 45563 0000
Q ss_pred --------------------hhHHHHHHHHHHc-CCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcchhccc
Q 038510 208 --------------------TVRAGRLLERLKK-EKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVLSCK 266 (871)
Q Consensus 208 --------------------~~~~~~l~~~l~~-~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va~~~ 266 (871)
......+...+.. .+++||||||||+...++.+ ++|++||||||+..++...
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~ 273 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSV 273 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTC
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhc
Confidence 0112334444443 27899999999987655432 5689999999999886321
Q ss_pred cCCcceeec---cCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHHhcCChhHHHHHHHHhcCC
Q 038510 267 MDCQQNFFV---DVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARALINKRLFEWKDSLLELRRP 343 (871)
Q Consensus 267 ~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~~~ 343 (871)
. ...+++ ++|+.+|+++||...++.. .....+.+++|+++|+|+||||..+|+.++.+. ..|..+++.+...
T Consensus 274 ~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 274 M--GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp C--SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred C--CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 2 334554 5899999999999998752 223356789999999999999999999999764 4799988887654
Q ss_pred CCCCc----cchhhhhheecccccccCChhhHHHHHHhhcccc---cchhhhHHHHhhcccccccccchHHHHHHHHHHH
Q 038510 344 SFRNI----SGTLEVAYKSIELSYNHLNREELKRTFLLIGYAF---ISCVKDVLYHGMGLGLFQNINTSEEAWDRAHTLV 416 (871)
Q Consensus 344 ~~~~~----~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp---~~~~~~li~~w~aeg~i~~~~~~~~~~~~~~~~~ 416 (871)
..... ......+..++..||+.||++ .|.||++||+|| .++.+.++..|.+++ +.+..++
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l 415 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDIL 415 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHH
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHHH
Confidence 32211 122357889999999999998 899999999998 478888999997642 2356789
Q ss_pred HHHHHhcccccC--CCccceehhHHHHHHHHHHhc
Q 038510 417 DKLKKSCLLVDG--NTSERFSMHDVVRDAAISIAS 449 (871)
Q Consensus 417 ~~L~~~~l~~~~--~~~~~~~~Hdlv~d~a~~~~~ 449 (871)
++|+++||++.. +...+|+||++||++++....
T Consensus 416 ~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 999999999743 234579999999999998843
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=4.3e-24 Score=252.04 Aligned_cols=358 Identities=17% Similarity=0.174 Sum_probs=233.5
Q ss_pred ccccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcE
Q 038510 471 EKLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQT 547 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~ 547 (871)
..+..++++++++|.+..++. ...+++|++|++++|....+++..|.++++|++|++++|.+..+ |..++++++|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 345689999999999988753 34899999999999988888777799999999999999999854 678999999999
Q ss_pred EEecccCCCC--CcccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCc--EEeccc
Q 038510 548 LCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLE--ELYIGE 622 (871)
Q Consensus 548 L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~--~L~l~~ 622 (871)
|++++|.++. +..++++++|++|++++|.+..++ ..+..+++|++|++++| .+..+++..++.+++|+ +|++.+
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCC
Confidence 9999999987 477899999999999999998763 33555999999999997 66777777689999999 888888
Q ss_pred CCCCccccccccch---------------------------------------------------------------hcc
Q 038510 623 SPIQWGTVEGLDSE---------------------------------------------------------------RRN 639 (871)
Q Consensus 623 ~~~~~~~~~~~~~~---------------------------------------------------------------~~~ 639 (871)
|.+.......+... ...
T Consensus 189 n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence 76543221111000 000
Q ss_pred cchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccC-CCCCCCccceeEEEeccCCcc-cchhhHHhh
Q 038510 640 ASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANI-CLNEGHIMQ 717 (871)
Q Consensus 640 ~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~ 717 (871)
.....++++++|+.|++..+....+|..+..+++|+.|.+..+..... ...+..++++..|++.++... ..+......
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 011225566777777777777777777766677777777755443222 123344566667776665432 333333444
Q ss_pred hcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCC
Q 038510 718 LKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLT 797 (871)
Q Consensus 718 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~ 797 (871)
+++|++|+++++...........++.+++|+.|+++++. +..+.. .....+++|+.|.++++. +..... ...
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~-~~~ 420 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKT-----EAFKECPQLELLDLAFTR-LKVKDA-QSP 420 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECT-----TTTTTCTTCSEEECTTCC-EECCTT-CCT
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCH-----HHhcCCccCCeEECCCCc-CCCccc-chh
Confidence 567777777665543332111223667777777777653 333211 123345666666666532 222210 001
Q ss_pred ccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 798 AESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 798 ~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
...+++|+.|++++| .+...++ ..+..+++|++|++++|+
T Consensus 421 ~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTCB
T ss_pred hhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCCC
Confidence 224566666666665 2333333 223556666666666653
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=4.5e-24 Score=249.99 Aligned_cols=155 Identities=23% Similarity=0.288 Sum_probs=132.3
Q ss_pred ccccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcE
Q 038510 471 EKLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQT 547 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~ 547 (871)
..+..++++++++|.+..++. ...+++|++|+++++....++...|.++++|++|++++|.++.+| ..++++++|++
T Consensus 25 ~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 345689999999999987764 348999999999999888888888999999999999999998765 68999999999
Q ss_pred EEecccCCCCC--cccCCCCCccEEEeeCCCccc--cchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCC----cEEe
Q 038510 548 LCLNYCNLGDI--AIIGDLKKLEILSLRGSDVEK--LVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRL----EELY 619 (871)
Q Consensus 548 L~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L----~~L~ 619 (871)
|++++|.++.+ ..++++++|++|++++|.++. +|..++++++|++|++++| .+..+++..++.+++| ++|+
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcc
Confidence 99999999874 359999999999999999885 7899999999999999997 5666666557777777 7788
Q ss_pred cccCCCC
Q 038510 620 IGESPIQ 626 (871)
Q Consensus 620 l~~~~~~ 626 (871)
+.+|.+.
T Consensus 184 l~~n~l~ 190 (570)
T 2z63_A 184 LSLNPMN 190 (570)
T ss_dssp CTTCCCC
T ss_pred cCCCCce
Confidence 8777544
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=5.6e-24 Score=251.04 Aligned_cols=154 Identities=23% Similarity=0.249 Sum_probs=128.4
Q ss_pred ccccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcE
Q 038510 471 EKLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQT 547 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~ 547 (871)
..+.+++++++++|.+..++. ...+++|+.|+++++....+++..|.++++|++|++++|.++.+ |..++++++|++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 345789999999999988765 34899999999999988888887899999999999999999976 788999999999
Q ss_pred EEecccCCCC-C-cccCCCCCccEEEeeCCCcc--ccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCc----EEe
Q 038510 548 LCLNYCNLGD-I-AIIGDLKKLEILSLRGSDVE--KLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLE----ELY 619 (871)
Q Consensus 548 L~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~----~L~ 619 (871)
|++++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++| .+..+++..++.+++|+ +|+
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceee
Confidence 9999999977 3 67999999999999999988 57899999999999999997 55556554455554443 566
Q ss_pred cccCCC
Q 038510 620 IGESPI 625 (871)
Q Consensus 620 l~~~~~ 625 (871)
+.+|.+
T Consensus 188 l~~n~l 193 (606)
T 3vq2_A 188 MSLNPI 193 (606)
T ss_dssp CTTCCC
T ss_pred ccCCCc
Confidence 555543
No 8
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.1e-23 Score=239.56 Aligned_cols=319 Identities=20% Similarity=0.221 Sum_probs=197.1
Q ss_pred ccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecc
Q 038510 473 LKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNY 552 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~ 552 (871)
..+++.+++.++.+..++....+++|+.|+++++....++. +.++++|++|++++|.+..++. ++++++|++|++++
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence 45678888888877777766678888888888877777665 7778888888888888877766 78888888888888
Q ss_pred cCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccc
Q 038510 553 CNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEG 632 (871)
Q Consensus 553 ~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 632 (871)
|.++.++.+.++++|++|++++|.+..+|. ++++++|++|+++. .+..+++ ++++++|++|++++|.+..
T Consensus 122 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~~----- 191 (466)
T 1o6v_A 122 NQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVSD----- 191 (466)
T ss_dssp SCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCCC-----
T ss_pred CCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCCC-----
Confidence 888775557888888888888887777764 77777777777753 3334443 6777777777777765421
Q ss_pred ccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchh
Q 038510 633 LDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNE 712 (871)
Q Consensus 633 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 712 (871)
+..+..+++|+.|++..+....++. +..+++|+.|.+..+... ..+.+..++++..|++.++.....+.
T Consensus 192 ---------~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 192 ---------ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIGTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp ---------CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ---------ChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cchhhhcCCCCCEEECCCCccccchh
Confidence 1235566666777666665554443 445566666666544321 12233344566666666555433333
Q ss_pred hHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccc
Q 038510 713 GHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKIC 792 (871)
Q Consensus 713 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~ 792 (871)
...+++|++|+++++.... .+. +..+++|+.|++++|. +..+ .....+++|+.|.++++ .+..++
T Consensus 261 --~~~l~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~L~~n~-l~~~-------~~~~~l~~L~~L~L~~n-~l~~~~ 325 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISN-ISP---LAGLTALTNLELNENQ-LEDI-------SPISNLKNLTYLTLYFN-NISDIS 325 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCC-CGG---GTTCTTCSEEECCSSC-CSCC-------GGGGGCTTCSEEECCSS-CCSCCG
T ss_pred --hhcCCCCCEEECCCCccCc-ccc---ccCCCccCeEEcCCCc-ccCc-------hhhcCCCCCCEEECcCC-cCCCch
Confidence 2344666666666553322 221 2556666666666642 2222 11345566666666664 333332
Q ss_pred cccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccC
Q 038510 793 RGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKC 838 (871)
Q Consensus 793 ~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 838 (871)
+...+++|+.|++++| ++..++ .+.++++|++|++++|
T Consensus 326 ----~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 326 ----PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHN 363 (466)
T ss_dssp ----GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSS
T ss_pred ----hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCC
Confidence 1235566666666665 344442 2355666666666655
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=6.2e-24 Score=232.13 Aligned_cols=303 Identities=19% Similarity=0.255 Sum_probs=158.1
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
..+++++++++++.+..++....+++|++|.++++....++. +.++++|++|++++|.++.+| .+..+++|++|+++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 345566666666666655554455666666665555554444 555566666666666555543 35555666666666
Q ss_pred ccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 552 YCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 552 ~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
+|.+..++.+..+++|++|++++|.....+..+..+++|++|++++| .+..++. ++.+++|++|++.+|.+..
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~---- 191 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED---- 191 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC----
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc----
Confidence 66555544455566666666665533323333555666666666554 3333333 4555566666655554321
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccch
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLN 711 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 711 (871)
+..+..+++|+.|.+..+....++. +..+++|+.|.+. ++.....+
T Consensus 192 ----------~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~-----------------------~n~l~~~~ 237 (347)
T 4fmz_A 192 ----------ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIG-----------------------NNKITDLS 237 (347)
T ss_dssp ----------CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECC-----------------------SSCCCCCG
T ss_pred ----------cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEcc-----------------------CCccCCCc
Confidence 1114455555555555544443332 3334444444442 22222222
Q ss_pred hhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccccccccc
Q 038510 712 EGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKI 791 (871)
Q Consensus 712 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l 791 (871)
. ...+++|++|++++|.. ..+. .+..+++|+.|++++| .+..+ .....+++|+.|.+++| .+...
T Consensus 238 ~--~~~l~~L~~L~l~~n~l-~~~~---~~~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~L~~n-~l~~~ 302 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQI-SDIN---AVKDLTKLKMLNVGSN-QISDI-------SVLNNLSQLNSLFLNNN-QLGNE 302 (347)
T ss_dssp G--GTTCTTCCEEECCSSCC-CCCG---GGTTCTTCCEEECCSS-CCCCC-------GGGGGCTTCSEEECCSS-CCCGG
T ss_pred c--hhcCCCCCEEECCCCcc-CCCh---hHhcCCCcCEEEccCC-ccCCC-------hhhcCCCCCCEEECcCC-cCCCc
Confidence 2 23346667777666532 2221 2356677777777765 23322 12345667777777764 23332
Q ss_pred ccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 792 CRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 792 ~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
.... ...+++|+.|++++|+ ++.+++ +..+++|++|++++|+
T Consensus 303 ~~~~--l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 303 DMEV--IGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp GHHH--HHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred ChhH--hhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 2111 2346677777777764 555544 3566777777776664
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.5e-24 Score=252.82 Aligned_cols=316 Identities=12% Similarity=0.128 Sum_probs=213.1
Q ss_pred cCcccccCCCcceEEEecCCCCCC------------------CCCccc--cccCCcEEEecccCCCC--CcccCCCCCcc
Q 038510 511 IPDNFFTGMTGLKVLDFTEMHLLP------------------LPSSLG--LLQNLQTLCLNYCNLGD--IAIIGDLKKLE 568 (871)
Q Consensus 511 ~~~~~~~~l~~Lr~L~l~~~~i~~------------------lp~~i~--~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~ 568 (871)
+|.. ++++++|++|++++|.++. +|..++ ++++|++|++++|.+.. |..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4443 6778889999999888887 888888 88999999999888654 67788888999
Q ss_pred EEEeeCCC-cc--ccchhhcCC------CCCCEEeCCCCCCCCccCh-hhhhCCCCCcEEecccCCCCcccccccc----
Q 038510 569 ILSLRGSD-VE--KLVGEMGQL------TQLRLLDLSKCFELKVIPP-NVISSLSRLEELYIGESPIQWGTVEGLD---- 634 (871)
Q Consensus 569 ~L~l~~~~-i~--~lp~~i~~L------~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~---- 634 (871)
+|++++|. ++ .+|..++++ ++|++|++++| .+..+|. +.++++++|++|++++|.+....+ .+.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence 99998887 77 488888776 88999998887 5557887 237888888888888887652111 111
Q ss_pred -------chhcccchhhhccCCC-CCeEEEeeccCCCCCcchhhhc--cceeEEEEeeecccC-CCCCC-------Cccc
Q 038510 635 -------SERRNASLHELNHLSK-LTSLEILIQDEKTIPSDLLFFK--ILKRYRIFIGYLWSD-DPILD-------GFSR 696 (871)
Q Consensus 635 -------~~~~~~~l~~L~~L~~-L~~L~i~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~-~~~~~-------~~~~ 696 (871)
..........+.++++ |+.|++..+....+|..+...+ +|+.|.+..+..... +..+. ...+
T Consensus 355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp ESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 0111122344667777 8888888777777777664433 777777765543321 12222 3357
Q ss_pred eeEEEeccCCcccchhhHHhhhcccceEEeeccCCceeccccCC------CCCCCCccEEEeecCCCceeEeecCccccc
Q 038510 697 KFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPG------REGFPQLKHLEVRDNRSLFCVVDTVDCATA 770 (871)
Q Consensus 697 l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~------~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 770 (871)
+..|+++++....+|.++...+++|++|+++++... .++.... ...+++|+.|+|+++ .+..++. .
T Consensus 435 L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~------~ 506 (636)
T 4eco_A 435 VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD------D 506 (636)
T ss_dssp EEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCG------G
T ss_pred CCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-cCCccCh------h
Confidence 888888887777777777777788888888877544 3332210 112338888888886 3444321 2
Q ss_pred C--CcCCccceeeccccccccccccccCCccccCCCCeEEEecCC-----C-CCccCChhhhccCCcccEEEeccCcchH
Q 038510 771 L--TAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCD-----K-LKNVFPLLIGRGLQQLQSIEVTKCQNME 842 (871)
Q Consensus 771 ~--~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~-----~-L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 842 (871)
. ..+++|+.|.+++ +.++.+|. ....+++|+.|++++|+ + ...+ |. .+.++++|++|++++|.- .
T Consensus 507 ~~~~~l~~L~~L~Ls~-N~l~~ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~-~l~~l~~L~~L~Ls~N~l-~ 579 (636)
T 4eco_A 507 FRATTLPYLVGIDLSY-NSFSKFPT---QPLNSSTLKGFGIRNQRDAQGNRTLREW-PE-GITLCPSLTQLQIGSNDI-R 579 (636)
T ss_dssp GSTTTCTTCCEEECCS-SCCSSCCC---GGGGCSSCCEEECCSCBCTTCCBCCCCC-CT-TGGGCSSCCEEECCSSCC-C
T ss_pred hhhccCCCcCEEECCC-CCCCCcCh---hhhcCCCCCEEECCCCcccccCcccccC-hH-HHhcCCCCCEEECCCCcC-C
Confidence 2 3678899999888 45555533 23468889999886532 2 3333 32 347788899999988754 4
Q ss_pred hH
Q 038510 843 VI 844 (871)
Q Consensus 843 ~i 844 (871)
.+
T Consensus 580 ~i 581 (636)
T 4eco_A 580 KV 581 (636)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.8e-24 Score=253.93 Aligned_cols=334 Identities=13% Similarity=0.138 Sum_probs=249.2
Q ss_pred CCcCcCCCCC-CCCCceEEEecCCCCCc------------------cCccc-ccCCCcceEEEecCCCCC-CCCCccccc
Q 038510 484 SNISELPQGF-ECPQLKYFRIGNDPSLR------------------IPDNF-FTGMTGLKVLDFTEMHLL-PLPSSLGLL 542 (871)
Q Consensus 484 ~~~~~l~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~-~~~l~~Lr~L~l~~~~i~-~lp~~i~~l 542 (871)
|.+..+|... .+++|+.|++++|.... +|..+ |.++++|++|+|++|.+. .+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5555577644 78999999999987776 77764 458999999999999866 789999999
Q ss_pred cCCcEEEecccC-CCC---CcccCCC-------CCccEEEeeCCCccccch--hhcCCCCCCEEeCCCCCCCCccChhhh
Q 038510 543 QNLQTLCLNYCN-LGD---IAIIGDL-------KKLEILSLRGSDVEKLVG--EMGQLTQLRLLDLSKCFELKVIPPNVI 609 (871)
Q Consensus 543 ~~Lr~L~L~~~~-i~~---~~~i~~l-------~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~i 609 (871)
++|++|+|++|. ++. |..++++ ++|++|++++|.++.+|. .++++++|++|++++| .+..+| . +
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-F 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-C
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-h
Confidence 999999999998 763 4445544 499999999999999998 8999999999999998 556888 4 8
Q ss_pred hCCCCCcEEecccCCCCccccccccchhcccchhhhccCCC-CCeEEEeeccCCCCCcchhhhc--cceeEEEEeeeccc
Q 038510 610 SSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSK-LTSLEILIQDEKTIPSDLLFFK--ILKRYRIFIGYLWS 686 (871)
Q Consensus 610 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~-L~~L~i~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~ 686 (871)
+++++|++|++++|.+.. ....+.++++ |+.|++..+....+|..+..++ +|+.|.+..+....
T Consensus 592 ~~L~~L~~L~Ls~N~l~~-------------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEE-------------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp CTTSEESEEECCSSCCSC-------------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCCCcceEEECcCCcccc-------------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 999999999999987641 1234778888 9999999988888887775444 49999987765433
Q ss_pred CCCCCC------CccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCceeccccCC------CCCCCCccEEEeec
Q 038510 687 DDPILD------GFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPG------REGFPQLKHLEVRD 754 (871)
Q Consensus 687 ~~~~~~------~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~------~~~l~~L~~L~L~~ 754 (871)
..+.+. ...++..|+++++....+|.++...+++|+.|+|+++... .++.... .+++++|+.|+|++
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 222222 2247899999998877888888877899999999887544 4332221 12344999999999
Q ss_pred CCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCC-----CCCccCChhhhccCCc
Q 038510 755 NRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCD-----KLKNVFPLLIGRGLQQ 829 (871)
Q Consensus 755 ~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~-----~L~~l~~~~~~~~l~~ 829 (871)
| .+..++.. .....+++|+.|.|+++ .+..++. ....+++|+.|++++|+ ++....|. .+.++++
T Consensus 738 N-~L~~lp~~----l~~~~l~~L~~L~Ls~N-~L~~lp~---~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~ 807 (876)
T 4ecn_A 738 N-KLTSLSDD----FRATTLPYLSNMDVSYN-CFSSFPT---QPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPS 807 (876)
T ss_dssp S-CCCCCCGG----GSTTTCTTCCEEECCSS-CCSSCCC---GGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSS
T ss_pred C-CCccchHH----hhhccCCCcCEEEeCCC-CCCccch---hhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCC
Confidence 7 45544211 01136899999999984 5666632 34578999999998743 23333332 3578999
Q ss_pred ccEEEeccCcchHhHh
Q 038510 830 LQSIEVTKCQNMEVIF 845 (871)
Q Consensus 830 L~~L~i~~C~~l~~i~ 845 (871)
|++|++++|.- ..+.
T Consensus 808 L~~L~Ls~N~L-~~Ip 822 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVD 822 (876)
T ss_dssp CCEEECCSSCC-CBCC
T ss_pred CCEEECCCCCC-CccC
Confidence 99999998854 4443
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=2.6e-23 Score=245.28 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=131.6
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 554 (871)
-+.++.+++.+..+|.... ++++.|+++++....++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 3567788888888887554 8999999999999999888899999999999999999976 5679999999999999999
Q ss_pred CCC--CcccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCC-ccChhhhhCCCCCcEEecccCCCCc
Q 038510 555 LGD--IAIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELK-VIPPNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 555 i~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~-~~p~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
++. |..++++++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+..
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCccee
Confidence 977 577999999999999999999888 679999999999999984433 46776 8999999999999997654
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.2e-24 Score=254.23 Aligned_cols=305 Identities=14% Similarity=0.111 Sum_probs=230.1
Q ss_pred cCcccccCCCcceEEEecCCCCCC------------------CCCccc--cccCCcEEEecccCCCC--CcccCCCCCcc
Q 038510 511 IPDNFFTGMTGLKVLDFTEMHLLP------------------LPSSLG--LLQNLQTLCLNYCNLGD--IAIIGDLKKLE 568 (871)
Q Consensus 511 ~~~~~~~~l~~Lr~L~l~~~~i~~------------------lp~~i~--~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~ 568 (871)
+|.. |.++++|++|+|++|.++. +|..++ ++++|++|+|++|.+.. |..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 5554 7889999999999999997 999988 99999999999998654 67899999999
Q ss_pred EEEeeCCC-ccc--cchhhcCCC-------CCCEEeCCCCCCCCccCh-hhhhCCCCCcEEecccCCCCccccccccchh
Q 038510 569 ILSLRGSD-VEK--LVGEMGQLT-------QLRLLDLSKCFELKVIPP-NVISSLSRLEELYIGESPIQWGTVEGLDSER 637 (871)
Q Consensus 569 ~L~l~~~~-i~~--lp~~i~~L~-------~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 637 (871)
+|++++|+ ++. +|..+++++ +|++|++++| .+..+|. +.++++++|++|++++|.+. .
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~--------- 587 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVR-H--------- 587 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCC-B---------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcc-c---------
Confidence 99999998 884 898888776 9999999998 5668998 23899999999999998764 1
Q ss_pred cccchhhhccCCCCCeEEEeeccCCCCCcchhhhcc-ceeEEEEeeecccCCCCCCCc--cceeEEEeccCCcccchhhH
Q 038510 638 RNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKI-LKRYRIFIGYLWSDDPILDGF--SRKFKLKITNGANICLNEGH 714 (871)
Q Consensus 638 ~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~--~~l~~L~l~~~~~~~~~~~~ 714 (871)
+..++.+++|+.|++..+....+|..+..+++ |+.|.+..+.....+..+... .++..|+++++.....++.+
T Consensus 588 ----lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l 663 (876)
T 4ecn_A 588 ----LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663 (876)
T ss_dssp ----CCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred ----chhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccc
Confidence 12578899999999999988899988888888 999999877644333333332 34899999887643222211
Q ss_pred H---h--hhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccc--cCCcCCccceeecccccc
Q 038510 715 I---M--QLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCAT--ALTAFPLLESLFLEDLGN 787 (871)
Q Consensus 715 ~---~--~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~--~~~~fp~L~~L~l~~~~~ 787 (871)
. . .+++|+.|++++|... .++... ...+++|+.|+|+++ .+..++....... ....+++|+.|.|+++ .
T Consensus 664 ~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~-~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~ 739 (876)
T 4ecn_A 664 SCSMDDYKGINASTVTLSYNEIQ-KFPTEL-FATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-K 739 (876)
T ss_dssp SSCTTTCCCCCEEEEECCSSCCC-SCCHHH-HHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-C
T ss_pred hhhhccccCCCcCEEEccCCcCC-ccCHHH-HccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-C
Confidence 1 1 2358999999887654 333221 247899999999996 5555432211100 0123459999999995 6
Q ss_pred ccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 788 LEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 788 l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
+..++.. +....+++|+.|++++| ++..+|. .+.++++|+.|++++|+
T Consensus 740 L~~lp~~-l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 740 LTSLSDD-FRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCCCCGG-GSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCB
T ss_pred CccchHH-hhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCC
Confidence 6777532 11136899999999997 5777754 34789999999998865
No 14
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=9e-23 Score=240.70 Aligned_cols=269 Identities=17% Similarity=0.153 Sum_probs=174.4
Q ss_pred ccccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcE
Q 038510 471 EKLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQT 547 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~ 547 (871)
....+++++++++|.+..+.. ...+++|++|++++|....+++..|.++++|++|++++|.++.+ |..++++++|++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 346788999999998876643 34899999999999888887777789999999999999999977 577899999999
Q ss_pred EEecccCCCC--CcccCCCCCccEEEeeCCCccccc-hhhcCCCCCC--EEeCCCCCCCCccC-----------------
Q 038510 548 LCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLR--LLDLSKCFELKVIP----------------- 605 (871)
Q Consensus 548 L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~--~L~l~~~~~l~~~p----------------- 605 (871)
|++++|.+.. ++.+..+++|++|++++|.++.++ ..++.+++|+ +|++++| .+..++
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-CCCEECTTTTTTCEEEEEECTTC
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-ccCccChhHhhhccccccccCCc
Confidence 9999999876 256666999999999999888774 5577888888 7777766 333222
Q ss_pred ----------------------------------------------------------hhhhhCCCCCcEEecccCCCCc
Q 038510 606 ----------------------------------------------------------PNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 606 ----------------------------------------------------------~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
+..++.+++|++|++++|.+..
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 292 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC
Confidence 2223445555555555554321
Q ss_pred cccccccchhcccchhhhccCCCCCeEEEeeccCCCC-CcchhhhccceeEEEEeeeccc-C-CCCCCCccceeEEEecc
Q 038510 628 GTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTI-PSDLLFFKILKRYRIFIGYLWS-D-DPILDGFSRKFKLKITN 704 (871)
Q Consensus 628 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~-~-~~~~~~~~~l~~L~l~~ 704 (871)
....+.++++|+.|++..+....+ |..+..+++|+.|.+..+.... . ...+..++++..|++++
T Consensus 293 -------------lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 293 -------------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp -------------CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred -------------CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 123356667777777776665554 3345566677777665543221 1 11234455666666655
Q ss_pred CCcccch--hhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecC
Q 038510 705 GANICLN--EGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDN 755 (871)
Q Consensus 705 ~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 755 (871)
+.....+ ......+++|++|+++++......+.. ++.+++|+.|+++++
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA--FKECPQLELLDLAFT 410 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT--TTTCTTCSEEECTTC
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHH--hcCCccCCeEECCCC
Confidence 5433332 122233456666666555433222211 245556666665554
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=2.1e-22 Score=229.13 Aligned_cols=325 Identities=18% Similarity=0.231 Sum_probs=260.0
Q ss_pred CCcccccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcE
Q 038510 468 PDKEKLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQT 547 (871)
Q Consensus 468 ~~~~~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~ 547 (871)
+......+++++++++|.+..++....+++|+.|.+.++....++. +.++++|++|++++|.++.+|. +.++++|++
T Consensus 62 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNR 138 (466)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred cchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCE
Confidence 3345577899999999999888877789999999999988887776 8899999999999999998875 899999999
Q ss_pred EEecccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCc
Q 038510 548 LCLNYCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 548 L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
|++++|.+..++.++.+++|++|++. +.+..++. +.++++|++|++++| .+..++. +..+++|++|++.+|.+..
T Consensus 139 L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 139 LELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCC
T ss_pred EECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCcccc
Confidence 99999999887789999999999997 45666654 899999999999998 5666654 7899999999999987642
Q ss_pred cccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCc
Q 038510 628 GTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGAN 707 (871)
Q Consensus 628 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 707 (871)
. ..++.+++|+.|++..+....++ .+..+++|+.|++..+...... .+..++++..|++.++..
T Consensus 214 ~--------------~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 214 I--------------TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQI 277 (466)
T ss_dssp C--------------GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC
T ss_pred c--------------ccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCCcc
Confidence 1 12667889999999988877664 4667889999998766543332 355678899999988875
Q ss_pred ccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccccc
Q 038510 708 ICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGN 787 (871)
Q Consensus 708 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~ 787 (871)
...+. ...+++|+.|++++|... ..+. ++.+++|+.|++++|. +..+ .....+++|+.|.++++ .
T Consensus 278 ~~~~~--~~~l~~L~~L~L~~n~l~-~~~~---~~~l~~L~~L~L~~n~-l~~~-------~~~~~l~~L~~L~l~~n-~ 342 (466)
T 1o6v_A 278 SNISP--LAGLTALTNLELNENQLE-DISP---ISNLKNLTYLTLYFNN-ISDI-------SPVSSLTKLQRLFFYNN-K 342 (466)
T ss_dssp CCCGG--GTTCTTCSEEECCSSCCS-CCGG---GGGCTTCSEEECCSSC-CSCC-------GGGGGCTTCCEEECCSS-C
T ss_pred Ccccc--ccCCCccCeEEcCCCccc-Cchh---hcCCCCCCEEECcCCc-CCCc-------hhhccCccCCEeECCCC-c
Confidence 55554 445789999999987543 3322 4789999999999974 4332 12467899999999996 5
Q ss_pred ccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 788 LEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 788 l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
+..++ ....+++|+.|++++| ++...++ +..+++|++|++++|+
T Consensus 343 l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 343 VSDVS----SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCCCG----GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE
T ss_pred cCCch----hhccCCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc
Confidence 66552 2346899999999998 4666655 4889999999999885
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=2.1e-23 Score=246.25 Aligned_cols=328 Identities=11% Similarity=0.093 Sum_probs=195.0
Q ss_pred CCCCceEEEecCCCCCc------------------cCccccc--CCCcceEEEecCCCCC-CCCCccccccCCcEEEecc
Q 038510 494 ECPQLKYFRIGNDPSLR------------------IPDNFFT--GMTGLKVLDFTEMHLL-PLPSSLGLLQNLQTLCLNY 552 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~------------------~~~~~~~--~l~~Lr~L~l~~~~i~-~lp~~i~~l~~Lr~L~L~~ 552 (871)
.+++|++|+++++.... +|.. +. ++++|++|++++|.+. .+|..++++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 45566666666555444 4443 33 5666666666666544 4555566666666666666
Q ss_pred cC-CCC---CcccCCC------CCccEEEeeCCCccccch--hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEec
Q 038510 553 CN-LGD---IAIIGDL------KKLEILSLRGSDVEKLVG--EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYI 620 (871)
Q Consensus 553 ~~-i~~---~~~i~~l------~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 620 (871)
|. ++. |..++++ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . ++.+++|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEEC
Confidence 65 442 3334443 556666666665555555 55566666666665553222455 2 455555555555
Q ss_pred ccCCCCccccccccc------------hhcccchhhhcc--CCCCCeEEEeeccCCC-CCcchh-------hhccceeEE
Q 038510 621 GESPIQWGTVEGLDS------------ERRNASLHELNH--LSKLTSLEILIQDEKT-IPSDLL-------FFKILKRYR 678 (871)
Q Consensus 621 ~~~~~~~~~~~~~~~------------~~~~~~l~~L~~--L~~L~~L~i~~~~~~~-~~~~l~-------~l~~L~~L~ 678 (871)
++|.+...+ ..+.. .........+.. +++|+.|++..+.... .|..+. .+.+|+.|.
T Consensus 361 ~~N~l~~lp-~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 361 AYNQITEIP-ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439 (636)
T ss_dssp CSSEEEECC-TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEE
T ss_pred CCCcccccc-HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEE
Confidence 554332110 00000 000011122333 3489999999877644 444444 566899999
Q ss_pred EEeeecccCCCC-CCCccceeEEEeccCCcccchhhHHhhh-------cccceEEeeccCCceeccccCCCCCCCCccEE
Q 038510 679 IFIGYLWSDDPI-LDGFSRKFKLKITNGANICLNEGHIMQL-------KGIEDLSLHGLLDMKNVLCEPGREGFPQLKHL 750 (871)
Q Consensus 679 l~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~~~~~~l-------~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 750 (871)
+..+.....+.. +..++++..|+++++....+|.+..... ++|+.|+++++... .++.......+++|+.|
T Consensus 440 Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 518 (636)
T 4eco_A 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGI 518 (636)
T ss_dssp CCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEE
T ss_pred CcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEE
Confidence 876654332221 2235789999999888767776654433 28999999987654 55544311389999999
Q ss_pred EeecCCCceeEeecCcccccCCcCCccceeeccccc------cccccccccCCccccCCCCeEEEecCCCCCccCChhhh
Q 038510 751 EVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLG------NLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIG 824 (871)
Q Consensus 751 ~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~------~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~ 824 (871)
+|+++. +..++ .....+++|+.|.++++. -...++ .....+++|+.|++++|. +..+|.. +
T Consensus 519 ~Ls~N~-l~~ip------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N~-l~~ip~~-~- 585 (636)
T 4eco_A 519 DLSYNS-FSKFP------TQPLNSSTLKGFGIRNQRDAQGNRTLREWP---EGITLCPSLTQLQIGSND-IRKVNEK-I- 585 (636)
T ss_dssp ECCSSC-CSSCC------CGGGGCSSCCEEECCSCBCTTCCBCCCCCC---TTGGGCSSCCEEECCSSC-CCBCCSC-C-
T ss_pred ECCCCC-CCCcC------hhhhcCCCCCEEECCCCcccccCcccccCh---HHHhcCCCCCEEECCCCc-CCccCHh-H-
Confidence 999964 44332 234568999999996532 222332 223569999999999984 6888653 2
Q ss_pred ccCCcccEEEeccCcch
Q 038510 825 RGLQQLQSIEVTKCQNM 841 (871)
Q Consensus 825 ~~l~~L~~L~i~~C~~l 841 (871)
.++|++|++++|+-.
T Consensus 586 --~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 586 --TPNISVLDIKDNPNI 600 (636)
T ss_dssp --CTTCCEEECCSCTTC
T ss_pred --hCcCCEEECcCCCCc
Confidence 389999999999633
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=6e-23 Score=239.21 Aligned_cols=325 Identities=17% Similarity=0.177 Sum_probs=215.1
Q ss_pred cccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEE
Q 038510 472 KLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTL 548 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L 548 (871)
....++++++++|.+..++. ...+++|++|+++++....+++..|.++++|++|++++|.+..+|.. ++++++|++|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 34678899999888876643 34788999999998888888777788899999999999998877654 8889999999
Q ss_pred EecccCCCC---CcccCCCCCccEEEeeCCC-ccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccC
Q 038510 549 CLNYCNLGD---IAIIGDLKKLEILSLRGSD-VEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGES 623 (871)
Q Consensus 549 ~L~~~~i~~---~~~i~~l~~L~~L~l~~~~-i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 623 (871)
++++|.++. +..++++++|++|++++|. +..+| ..+.++++|++|++++|...+..|.. ++.+++|++|++..+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccC
Confidence 999998864 4678889999999999886 67777 46888999999999887444445544 788889999988877
Q ss_pred CCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCC---cch-hhhc---------------------------
Q 038510 624 PIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIP---SDL-LFFK--------------------------- 672 (871)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~---~~l-~~l~--------------------------- 672 (871)
...... -..+..+++|+.|++..+....++ ..+ ..++
T Consensus 183 ~~~~~~------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~ 250 (549)
T 2z81_A 183 ESAFLL------------EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI 250 (549)
T ss_dssp BSTTHH------------HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred cccccc------------hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence 542111 112356889999999987765532 111 1223
Q ss_pred -cceeEEEEeeecccCC-------CCCCC-----------------------------ccceeEEEeccCCcccchhhHH
Q 038510 673 -ILKRYRIFIGYLWSDD-------PILDG-----------------------------FSRKFKLKITNGANICLNEGHI 715 (871)
Q Consensus 673 -~L~~L~l~~~~~~~~~-------~~~~~-----------------------------~~~l~~L~l~~~~~~~~~~~~~ 715 (871)
+|+.+.+..+...... ..... ..++..|++.++....+|.++.
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~ 330 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS 330 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence 3444444333211100 00011 1345566666665556677776
Q ss_pred hhhcccceEEeeccCCceeccc-cCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccc
Q 038510 716 MQLKGIEDLSLHGLLDMKNVLC-EPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRG 794 (871)
Q Consensus 716 ~~l~~L~~L~L~~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~ 794 (871)
..+++|++|+++++......+. ....+.+++|+.|++++| .++.+.. .......+++|+.|+++++ .++.++.
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~~~l~~L~~L~Ls~N-~l~~lp~- 404 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQK---TGEILLTLKNLTSLDISRN-TFHPMPD- 404 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHH---HHHHGGGCTTCCEEECTTC-CCCCCCS-
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-ccccccc---chhhhhcCCCCCEEECCCC-CCccCCh-
Confidence 6678888888888765443321 112367888888888886 3433211 0012456778888888774 5555532
Q ss_pred cCCccccCCCCeEEEecCCCCCcc
Q 038510 795 SLTAESFCKLKNIRVQRCDKLKNV 818 (871)
Q Consensus 795 ~~~~~~~~~L~~L~l~~C~~L~~l 818 (871)
....+++|++|++++|. ++.+
T Consensus 405 --~~~~~~~L~~L~Ls~N~-l~~l 425 (549)
T 2z81_A 405 --SCQWPEKMRFLNLSSTG-IRVV 425 (549)
T ss_dssp --CCCCCTTCCEEECTTSC-CSCC
T ss_pred --hhcccccccEEECCCCC-cccc
Confidence 12345667777776653 4444
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.5e-22 Score=229.86 Aligned_cols=350 Identities=19% Similarity=0.179 Sum_probs=243.0
Q ss_pred cccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCC-ccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcE
Q 038510 472 KLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSL-RIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQT 547 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~ 547 (871)
.+.+++++++++|.+..++. ...+++|++|+++++... .++...|.++++|++|++++|.++.+ |..++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 45778999999998877632 347889999999887654 66667788899999999999998855 778889999999
Q ss_pred EEecccCCCC--Ccc--cCCCCCccEEEeeCCCcccc-chh-hcCCCCCCEEeCCCCCCCCccChhhhhCC--CCCcEEe
Q 038510 548 LCLNYCNLGD--IAI--IGDLKKLEILSLRGSDVEKL-VGE-MGQLTQLRLLDLSKCFELKVIPPNVISSL--SRLEELY 619 (871)
Q Consensus 548 L~L~~~~i~~--~~~--i~~l~~L~~L~l~~~~i~~l-p~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L--~~L~~L~ 619 (871)
|++++|.++. +.. ++++++|++|++++|.+..+ |.. +.++++|++|++++| .+..+++..+..+ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccc
Confidence 9999999876 444 88899999999999988877 444 788999999999987 4444444435655 6788888
Q ss_pred cccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCC-CCcchhh---hccceeEEEEeeecccCC-------
Q 038510 620 IGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKT-IPSDLLF---FKILKRYRIFIGYLWSDD------- 688 (871)
Q Consensus 620 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~-~~~~l~~---l~~L~~L~l~~~~~~~~~------- 688 (871)
+.++.+.......+. ......+..+++|+.|+++.+.... .|..+.. ..+|+.|.+..+......
T Consensus 187 l~~n~l~~~~~~~~~----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 187 LSSITLQDMNEYWLG----WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp CTTCBCTTCSTTCTT----HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccCcccccchhhcc----ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 888765432211100 0111224456778888888765533 2333322 267777776544211100
Q ss_pred ----CCCC--CccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEe
Q 038510 689 ----PILD--GFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVV 762 (871)
Q Consensus 689 ----~~~~--~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 762 (871)
..+. ..+++..|++.++.....++.....+++|++|+++++......+.. ++.+++|++|+|++| .+..+.
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~ 339 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQN-FLGSID 339 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSS-CCCEEC
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCC-ccCCcC
Confidence 0011 1257888988887755554444556789999999887655443333 378999999999997 454442
Q ss_pred ecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 763 DTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 763 ~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
. .....+++|+.|+++++ .+..+.... ...+++|++|++++| +++.+++. .+..+++|++|++++++
T Consensus 340 ~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 S-----RMFENLDKLEVLDLSYN-HIRALGDQS--FLGLPNLKELALDTN-QLKSVPDG-IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp G-----GGGTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred h-----hHhcCcccCCEEECCCC-cccccChhh--ccccccccEEECCCC-ccccCCHh-HhccCCcccEEEccCCC
Confidence 1 23456899999999985 556553222 346899999999996 68888663 45889999999997643
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.6e-23 Score=249.02 Aligned_cols=339 Identities=17% Similarity=0.127 Sum_probs=220.0
Q ss_pred ccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCC-CCCCccccccCCcEEEec
Q 038510 473 LKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLL-PLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~-~lp~~i~~l~~Lr~L~L~ 551 (871)
..+++++++++|.+........+++|+.|++++|.....++. +.+++.|++|++++|.++ .+|..++++++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 456777777777776554446778888888888766554444 778888888888888887 567778888888888888
Q ss_pred ccCCCC-CcccCCCCCccEEEeeCCCcc-ccchhhcCC-CCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcc
Q 038510 552 YCNLGD-IAIIGDLKKLEILSLRGSDVE-KLVGEMGQL-TQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWG 628 (871)
Q Consensus 552 ~~~i~~-~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~ 628 (871)
+|.+.. ++.. .+++|++|++++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++.+|.+...
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCc
Confidence 888754 3333 7888888888888777 777777664 88888888887544455655 78888888888887764311
Q ss_pred ccccccchhcccchhhhccCCCCCeEEEeeccCC-CCCcchhhhc-cceeEEEEeeeccc-CCCCCCC--ccceeEEEec
Q 038510 629 TVEGLDSERRNASLHELNHLSKLTSLEILIQDEK-TIPSDLLFFK-ILKRYRIFIGYLWS-DDPILDG--FSRKFKLKIT 703 (871)
Q Consensus 629 ~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~-~~~~~l~~l~-~L~~L~l~~~~~~~-~~~~~~~--~~~l~~L~l~ 703 (871)
. ....+.++++|+.|++..+... .+|..+..+. +|+.|++..+.... ..+.... ++++..|++.
T Consensus 334 i-----------p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 334 L-----------PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp C-----------CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred C-----------CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 1 1233777888888888877654 6777776666 78888876554322 1112211 4567777777
Q ss_pred cCCcc-cchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeec
Q 038510 704 NGANI-CLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFL 782 (871)
Q Consensus 704 ~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l 782 (871)
++... ..|.++ ..+++|++|++++|......+.. ++.+++|+.|++++|.--..+ ......+++|+.|.+
T Consensus 403 ~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 403 NNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSS--LGSLSKLRDLKLWLNMLEGEI------PQELMYVKTLETLIL 473 (768)
T ss_dssp SSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGG--GGGCTTCCEEECCSSCCCSCC------CGGGGGCTTCCEEEC
T ss_pred CCccccccCHHH-hcCCCCCEEECcCCcccCcccHH--HhcCCCCCEEECCCCcccCcC------CHHHcCCCCceEEEe
Confidence 76544 334443 34577888888776543333332 266778888888876421111 113345677777777
Q ss_pred cccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 783 EDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 783 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
+++.-...++ .....+++|+.|++++|. +....|. .+..+++|++|++++|.
T Consensus 474 ~~N~l~~~~p---~~l~~l~~L~~L~L~~N~-l~~~~p~-~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 474 DFNDLTGEIP---SGLSNCTNLNWISLSNNR-LTGEIPK-WIGRLENLAILKLSNNS 525 (768)
T ss_dssp CSSCCCSCCC---GGGGGCTTCCEEECCSSC-CCSCCCG-GGGGCTTCCEEECCSSC
T ss_pred cCCcccCcCC---HHHhcCCCCCEEEccCCc-cCCcCCh-HHhcCCCCCEEECCCCc
Confidence 7743222232 123456777777777764 4433232 34667777777777764
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-22 Score=224.68 Aligned_cols=305 Identities=13% Similarity=0.166 Sum_probs=205.8
Q ss_pred CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccE
Q 038510 493 FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEI 569 (871)
Q Consensus 493 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~ 569 (871)
..+++++.|.+.++....+|..+|.++++|++|++++|.+..+| ..++.+++|++|++++|.++. +..++++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35567777777777777777777777777777777777777555 367777777777777777766 244677777777
Q ss_pred EEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccC
Q 038510 570 LSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHL 648 (871)
Q Consensus 570 L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 648 (871)
|++++|.++.+|.. ++++++|++|++++| .+..+++..++.+++|++|++.+|.+... .+..+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~l 185 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---------------DLSLI 185 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC---------------CGGGC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc---------------ccccc
Confidence 77777777777765 367777777777776 45556555567777777777777665321 24456
Q ss_pred CCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeec
Q 038510 649 SKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHG 728 (871)
Q Consensus 649 ~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 728 (871)
++|+.|++..+....++ ...+|+.|.+..+....... ..++++..|++.++..... .+ ...+++|++|++++
T Consensus 186 ~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT-AW-LLNYPGLVEVDLSY 257 (390)
T ss_dssp TTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC-GG-GGGCTTCSEEECCS
T ss_pred cccceeecccccccccC----CCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc-HH-HcCCCCccEEECCC
Confidence 67777777655444322 23456666655433221111 1235677777776654333 23 34568999999998
Q ss_pred cCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEE
Q 038510 729 LLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIR 808 (871)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~ 808 (871)
+......+.. +..+++|+.|+++++ .+..++. ....+|+|+.|.++++ .+..++. ....+++|+.|+
T Consensus 258 n~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~---~~~~l~~L~~L~ 324 (390)
T 3o6n_A 258 NELEKIMYHP--FVKMQRLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLLHVER---NQPQFDRLENLY 324 (390)
T ss_dssp SCCCEEESGG--GTTCSSCCEEECCSS-CCCEEEC------SSSCCTTCCEEECCSS-CCCCCGG---GHHHHTTCSEEE
T ss_pred CcCCCcChhH--ccccccCCEEECCCC-cCcccCc------ccCCCCCCCEEECCCC-cceecCc---cccccCcCCEEE
Confidence 8655443333 378999999999996 4655522 2356899999999995 6666643 235689999999
Q ss_pred EecCCCCCccCChhhhccCCcccEEEeccCc
Q 038510 809 VQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 809 l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
+++|+ ++.++ +..+++|++|++++++
T Consensus 325 L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 325 LDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred CCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 99984 66664 3678999999998865
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.5e-22 Score=234.03 Aligned_cols=344 Identities=14% Similarity=0.154 Sum_probs=226.5
Q ss_pred ccccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCC--CCCccccccCCc
Q 038510 471 EKLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLP--LPSSLGLLQNLQ 546 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~--lp~~i~~l~~Lr 546 (871)
....+++++++++|.+..++. ...+++|++|++++|....++...|.++++|++|++++|.++. .|..++++++|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 346789999999999987764 3489999999999999988988889999999999999999984 567899999999
Q ss_pred EEEecccC-CCC-C-cccCCCCCccEEEeeCCCccc-cchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEeccc
Q 038510 547 TLCLNYCN-LGD-I-AIIGDLKKLEILSLRGSDVEK-LVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622 (871)
Q Consensus 547 ~L~L~~~~-i~~-~-~~i~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 622 (871)
+|++++|. ++. + ..++++++|++|++++|.++. .|..++++++|++|+++.| ....+|...++.+++|++|++++
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEES
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEEccC
Confidence 99999998 555 3 579999999999999999885 6788999999999999887 45666766557788899999888
Q ss_pred CCCCccccccccc-------------------hhcccc------------------------------hhhhc-------
Q 038510 623 SPIQWGTVEGLDS-------------------ERRNAS------------------------------LHELN------- 646 (871)
Q Consensus 623 ~~~~~~~~~~~~~-------------------~~~~~~------------------------------l~~L~------- 646 (871)
|.+.......... ...... ...+.
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 7654321000000 000000 00001
Q ss_pred ----------------------cCCCCCeEEEeeccCCCCCcch-hhhccceeEEEEeeecccC----CCCCCCccceeE
Q 038510 647 ----------------------HLSKLTSLEILIQDEKTIPSDL-LFFKILKRYRIFIGYLWSD----DPILDGFSRKFK 699 (871)
Q Consensus 647 ----------------------~L~~L~~L~i~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~----~~~~~~~~~l~~ 699 (871)
.+.+|+.|++..+....+|..+ ..+++|+.|++..+..... ...+..++++..
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~ 365 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence 1234556666665566666655 4577788887765543221 112345577888
Q ss_pred EEeccCCcccchh--hHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCcc
Q 038510 700 LKITNGANICLNE--GHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLL 777 (871)
Q Consensus 700 L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L 777 (871)
|+++++.....+. .....+++|++|++++|.. +.++.. .+.+++|++|++++|. +..++ ...+++|
T Consensus 366 L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~--~~~~~~L~~L~Ls~N~-l~~l~--------~~~~~~L 433 (549)
T 2z81_A 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDS--CQWPEKMRFLNLSSTG-IRVVK--------TCIPQTL 433 (549)
T ss_dssp EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-CCCCSC--CCCCTTCCEEECTTSC-CSCCC--------TTSCTTC
T ss_pred EEccCCcccccccchhhhhcCCCCCEEECCCCCC-ccCChh--hcccccccEEECCCCC-ccccc--------chhcCCc
Confidence 8887776544442 3345568888888887743 344332 3667888888888863 43321 1112455
Q ss_pred ceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccC
Q 038510 778 ESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKC 838 (871)
Q Consensus 778 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 838 (871)
+.|+++++ .++.++ ..+++|++|++++| +++.+|.. ..+++|++|++++|
T Consensus 434 ~~L~Ls~N-~l~~~~------~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 434 EVLDVSNN-NLDSFS------LFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMKISRN 483 (549)
T ss_dssp SEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEECCSS
T ss_pred eEEECCCC-Chhhhc------ccCChhcEEECCCC-ccCcCCCc---ccCccCCEEecCCC
Confidence 55555553 333221 23555555555554 44444431 34555555555554
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=5.3e-22 Score=229.50 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=57.8
Q ss_pred cccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 474 KVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
.+++++++++|.+..++. ...+++|++|++++|....+++..|.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 345555555555444432 12445555555555444444333445555555555555555544443 45555555555
Q ss_pred ccCCCC---CcccCCCCCccEEEeeCCCccccchhhcCCCCC--CEEeCCCC
Q 038510 552 YCNLGD---IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQL--RLLDLSKC 598 (871)
Q Consensus 552 ~~~i~~---~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L--~~L~l~~~ 598 (871)
+|.++. |..++++++|++|++++|.+.. ..+..+++| ++|++++|
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEEC
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecc
Confidence 555432 2345555555555555554443 223444444 55555444
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.3e-22 Score=235.88 Aligned_cols=306 Identities=13% Similarity=0.160 Sum_probs=222.7
Q ss_pred CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC-C-cccCCCCCccE
Q 038510 493 FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD-I-AIIGDLKKLEI 569 (871)
Q Consensus 493 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~-~-~~i~~l~~L~~ 569 (871)
..+++++.|.+.++....+|..+|.+++.|++|++++|.++.+| ..++.+++|++|+|++|.+.. + ..++++++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35678888888888888888888888888888888888888665 478888888888888888877 3 45688888888
Q ss_pred EEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccC
Q 038510 570 LSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHL 648 (871)
Q Consensus 570 L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 648 (871)
|++++|.++.+|.. ++++++|++|++++| .+..+++..++.+++|++|++++|.+... .++.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------~~~~l 191 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV---------------DLSLI 191 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC---------------CGGGC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc---------------Chhhh
Confidence 88888888888876 478888888888887 55666665578888888888888765321 24556
Q ss_pred CCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeec
Q 038510 649 SKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHG 728 (871)
Q Consensus 649 ~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 728 (871)
++|+.|++..+....++ ...+|+.|.+..+........ .++++..|+++++.... +.+ ...+++|+.|++++
T Consensus 192 ~~L~~L~l~~n~l~~l~----~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 192 PSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD-TAW-LLNYPGLVEVDLSY 263 (597)
T ss_dssp TTCSEEECCSSCCSEEE----CCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC-CGG-GGGCTTCSEEECCS
T ss_pred hhhhhhhcccCcccccc----CCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC-Chh-hccCCCCCEEECCC
Confidence 77888888766554332 234677777655432221111 12567788887776433 333 34568999999998
Q ss_pred cCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEE
Q 038510 729 LLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIR 808 (871)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~ 808 (871)
+......+..+ +.+++|+.|+|+++ .+..++. ....+|+|+.|+++++ .+..++. ....+++|+.|+
T Consensus 264 N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~Ls~N-~l~~i~~---~~~~l~~L~~L~ 330 (597)
T 3oja_B 264 NELEKIMYHPF--VKMQRLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLLHVER---NQPQFDRLENLY 330 (597)
T ss_dssp SCCCEEESGGG--TTCSSCCEEECTTS-CCCEEEC------SSSCCTTCCEEECCSS-CCCCCGG---GHHHHTTCSEEE
T ss_pred CccCCCCHHHh--cCccCCCEEECCCC-CCCCCCc------ccccCCCCcEEECCCC-CCCccCc---ccccCCCCCEEE
Confidence 86655444333 78999999999996 4655532 3356899999999985 5666643 235789999999
Q ss_pred EecCCCCCccCChhhhccCCcccEEEeccCcc
Q 038510 809 VQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQN 840 (871)
Q Consensus 809 l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 840 (871)
+++|+ +..++ +..+++|+.|++++|+-
T Consensus 331 L~~N~-l~~~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 331 LDHNS-IVTLK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCSSC-CCCCC----CCTTCCCSEEECCSSCE
T ss_pred CCCCC-CCCcC----hhhcCCCCEEEeeCCCC
Confidence 99984 66664 36789999999988763
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=1.2e-21 Score=239.16 Aligned_cols=152 Identities=23% Similarity=0.356 Sum_probs=122.4
Q ss_pred cccccceeecccCCcCcCCC--CCCCCCceEEEecCC-CCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcE
Q 038510 472 KLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGND-PSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQT 547 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~ 547 (871)
.+.++++|++++|.+..++. ...+++|+.|+++++ ....+++..|.++++|++|+|++|.+..+ |..++++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 67889999999999987643 348999999999997 55667677799999999999999999855 789999999999
Q ss_pred EEecccCCCC--Ccc--cCCCCCccEEEeeCCCccccc--hhhcCCCCCCEEeCCCCCCCCccChhhhhCC--CCCcEEe
Q 038510 548 LCLNYCNLGD--IAI--IGDLKKLEILSLRGSDVEKLV--GEMGQLTQLRLLDLSKCFELKVIPPNVISSL--SRLEELY 619 (871)
Q Consensus 548 L~L~~~~i~~--~~~--i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L--~~L~~L~ 619 (871)
|+|++|.+.. +.. ++++++|++|++++|.++.++ ..++++++|++|++++|......|.. ++.+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEE
Confidence 9999999876 444 899999999999999998764 56899999999999997433333333 5544 5555555
Q ss_pred cccCC
Q 038510 620 IGESP 624 (871)
Q Consensus 620 l~~~~ 624 (871)
+.+|.
T Consensus 181 L~~n~ 185 (844)
T 3j0a_A 181 LAANS 185 (844)
T ss_dssp ECCSB
T ss_pred CCCCc
Confidence 55544
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=5.1e-22 Score=216.94 Aligned_cols=284 Identities=19% Similarity=0.219 Sum_probs=222.8
Q ss_pred CCcccccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcE
Q 038510 468 PDKEKLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQT 547 (871)
Q Consensus 468 ~~~~~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~ 547 (871)
+.....++++++++++|.+..++....+++|++|.+.++....++. +.++++|++|++++|.+..+|. +..+++|++
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 3445578899999999999888877799999999999988877753 8899999999999999998876 899999999
Q ss_pred EEecccC-CCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 548 LCLNYCN-LGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 548 L~L~~~~-i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
|++++|. +..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|+.|++.+|.+.
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCC
Confidence 9999996 5567789999999999999999998887 899999999999998 6677766 789999999999988764
Q ss_pred ccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCC
Q 038510 627 WGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGA 706 (871)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~ 706 (871)
.. ..+..+++|+.|++..+....++. +..+++|+.|.+..+...
T Consensus 213 ~~--------------~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~--------------------- 256 (347)
T 4fmz_A 213 DI--------------TPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS--------------------- 256 (347)
T ss_dssp CC--------------GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC---------------------
T ss_pred CC--------------chhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC---------------------
Confidence 21 227788999999999988877766 667778888877543211
Q ss_pred cccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccc
Q 038510 707 NICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLG 786 (871)
Q Consensus 707 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 786 (871)
..+ ....+++|++|++++|.. ...+ .+..+++|+.|++++|. +... .......+++|+.|.+++++
T Consensus 257 --~~~--~~~~l~~L~~L~l~~n~l-~~~~---~~~~l~~L~~L~L~~n~-l~~~-----~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 257 --DIN--AVKDLTKLKMLNVGSNQI-SDIS---VLNNLSQLNSLFLNNNQ-LGNE-----DMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp --CCG--GGTTCTTCCEEECCSSCC-CCCG---GGGGCTTCSEEECCSSC-CCGG-----GHHHHHTCTTCSEEECCSSS
T ss_pred --CCh--hHhcCCCcCEEEccCCcc-CCCh---hhcCCCCCCEEECcCCc-CCCc-----ChhHhhccccCCEEEccCCc
Confidence 111 123457889999888743 3332 23678999999999974 3221 11133568999999999964
Q ss_pred cccccccccCCccccCCCCeEEEecCC
Q 038510 787 NLEKICRGSLTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 787 ~l~~l~~~~~~~~~~~~L~~L~l~~C~ 813 (871)
++.++. ...+++|++|++++|+
T Consensus 323 -l~~~~~----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 -ITDIRP----LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCCCGG----GGGCTTCSEESSSCC-
T ss_pred -cccccC----hhhhhccceeehhhhc
Confidence 555532 4578999999999874
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.3e-22 Score=245.02 Aligned_cols=208 Identities=16% Similarity=0.106 Sum_probs=115.8
Q ss_pred hhhccCCCCCeEEEeeccCC-CCCcchhhhccceeEEEEeeeccc-CCCCCCCccceeEEEeccCCcc-cchhhHHhhhc
Q 038510 643 HELNHLSKLTSLEILIQDEK-TIPSDLLFFKILKRYRIFIGYLWS-DDPILDGFSRKFKLKITNGANI-CLNEGHIMQLK 719 (871)
Q Consensus 643 ~~L~~L~~L~~L~i~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~l~ 719 (871)
..++++++|+.|++..+... .+|..+..+++|+.|.+..+.... .+..+..++++..|++.++... ..|.|+. .++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~ 514 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLE 514 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCC
Confidence 34556666666666655544 455556666667777665554332 2233444566777777666544 3455543 357
Q ss_pred ccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcc--------------------------------
Q 038510 720 GIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDC-------------------------------- 767 (871)
Q Consensus 720 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~-------------------------------- 767 (871)
+|++|++++|.....++... +.+++|+.|++++|+-...++.....
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TCCEEECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCEEECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 77777777776555554433 66777777777776321122110000
Q ss_pred --------------------------------cccCCcCCccceeecccccccc-ccccccCCccccCCCCeEEEecCCC
Q 038510 768 --------------------------------ATALTAFPLLESLFLEDLGNLE-KICRGSLTAESFCKLKNIRVQRCDK 814 (871)
Q Consensus 768 --------------------------------~~~~~~fp~L~~L~l~~~~~l~-~l~~~~~~~~~~~~L~~L~l~~C~~ 814 (871)
......+++|+.|+++++ .+. .+| ...+.+++|+.|+++++ +
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip---~~l~~l~~L~~L~Ls~N-~ 667 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIP---KEIGSMPYLFILNLGHN-D 667 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCC---GGGGGCTTCCEEECCSS-C
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCC---HHHhccccCCEEeCcCC-c
Confidence 001223466777777764 333 332 22356777888888776 3
Q ss_pred CCccCChhhhccCCcccEEEeccCcchHhHhhcCCCCcccCCCcccccccccceeeC
Q 038510 815 LKNVFPLLIGRGLQQLQSIEVTKCQNMEVIFAADRGDESSNNNTQVIELTQLRTLEL 871 (871)
Q Consensus 815 L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~~~~~~~~~~~~~~p~L~~l~L 871 (871)
+....|. .+.++++|+.|++++|. +...++ .....+++|++|.|
T Consensus 668 l~g~ip~-~l~~L~~L~~LdLs~N~-l~g~ip-----------~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 668 ISGSIPD-EVGDLRGLNILDLSSNK-LDGRIP-----------QAMSALTMLTEIDL 711 (768)
T ss_dssp CCSCCCG-GGGGCTTCCEEECCSSC-CEECCC-----------GGGGGCCCCSEEEC
T ss_pred cCCCCCh-HHhCCCCCCEEECCCCc-ccCcCC-----------hHHhCCCCCCEEEC
Confidence 4433332 34777888888887764 332222 12345778887764
No 27
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=1.2e-21 Score=234.41 Aligned_cols=257 Identities=17% Similarity=0.138 Sum_probs=172.4
Q ss_pred cccccceeecccCCcCcCCCC--CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEE
Q 038510 472 KLKVCTAISLIYSNISELPQG--FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTL 548 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L 548 (871)
.+.+++++++++|.+..++.. ..+++|++|+++++....+++..|.+++.|++|++++|.++.+|. .++++++|++|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 457899999999999887753 478999999999988888877788999999999999999998886 59999999999
Q ss_pred EecccCCCC-C-cccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhh--CCCCCcEEecccC
Q 038510 549 CLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVIS--SLSRLEELYIGES 623 (871)
Q Consensus 549 ~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~--~L~~L~~L~l~~~ 623 (871)
++++|.+.. + ..++++++|++|++++|.+...+ ..++++++|++|++++| .+..+++..++ .+++|++|++++|
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCC
Confidence 999999877 3 56899999999999999888664 55889999999999997 56667665444 4689999999988
Q ss_pred CCCccccccccchhc------------ccchhh---hccCCCCCeEEEeeccCCCC-Ccchhhhcc--ceeEEEEeeecc
Q 038510 624 PIQWGTVEGLDSERR------------NASLHE---LNHLSKLTSLEILIQDEKTI-PSDLLFFKI--LKRYRIFIGYLW 685 (871)
Q Consensus 624 ~~~~~~~~~~~~~~~------------~~~l~~---L~~L~~L~~L~i~~~~~~~~-~~~l~~l~~--L~~L~l~~~~~~ 685 (871)
.+.......+..... ...... .-..++|+.|.+..+..... |..+..++. |+.|++..+...
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 764322111100000 000000 00124566666665544332 233333333 666666544322
Q ss_pred cC-CCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeecc
Q 038510 686 SD-DPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGL 729 (871)
Q Consensus 686 ~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 729 (871)
.. ...+..++++..|++.++.....++.....+++|+.|++.++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 21 123344456666666655433333333334456666666543
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.7e-21 Score=227.21 Aligned_cols=144 Identities=19% Similarity=0.283 Sum_probs=116.9
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~ 554 (871)
.++++++++++..+|.... ++++.|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 33 ~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 3788899898888887553 8899999999888888877789999999999999999866 5778899999999999999
Q ss_pred CCCCcccCCCCCccEEEeeCCCccccc--hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCC--cEEecccCCC
Q 038510 555 LGDIAIIGDLKKLEILSLRGSDVEKLV--GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRL--EELYIGESPI 625 (871)
Q Consensus 555 i~~~~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 625 (871)
++.++.. .+++|++|++++|.++.+| ..++++++|++|++++| .+...+ +..+++| ++|++.+|.+
T Consensus 112 l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 8884433 8999999999999988765 67899999999999887 333322 4555555 8888888765
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=9.7e-22 Score=230.14 Aligned_cols=148 Identities=20% Similarity=0.309 Sum_probs=126.3
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i 555 (871)
+.+..++.++..+|... .++++.|+++++....++...|.+++.|++|++++|.+..++ ..++++++|++|++++|.+
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 34555556667777644 468999999999998888878999999999999999999765 5689999999999999999
Q ss_pred CC--CcccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCc--cChhhhhCCCCCcEEecccCCCCc
Q 038510 556 GD--IAIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKV--IPPNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 556 ~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
+. +..++++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|.+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccce
Confidence 87 3679999999999999999999886 5899999999999998 4443 5766 8999999999999987653
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=2.8e-21 Score=220.78 Aligned_cols=311 Identities=18% Similarity=0.157 Sum_probs=181.3
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i 555 (871)
+.+..+++.+..+|... .++++.|+++++....++...|.++++|++|+|++|.++.+ |..++++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 34555556666666543 35778888887777777666677788888888888877754 66777888888888888887
Q ss_pred CC-C-cccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccc
Q 038510 556 GD-I-AIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEG 632 (871)
Q Consensus 556 ~~-~-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 632 (871)
+. + ..++++++|++|++++|.+..++ ..+.++++|++|++++| .+..+++..++.+++|++|++.+|.+...
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---- 167 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI---- 167 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC----
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc----
Confidence 76 3 34677888888888888777654 45777888888888776 55555555577788888888877765321
Q ss_pred ccchhcccchhhhccCCCCCeEEEeeccCCCCCc-chhhhccceeEEEEeeecccC-CCCCCCccceeEEEeccCCcccc
Q 038510 633 LDSERRNASLHELNHLSKLTSLEILIQDEKTIPS-DLLFFKILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGANICL 710 (871)
Q Consensus 633 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~ 710 (871)
....+.++++|+.|++..+....++. .+..+++|+.|.+..+..... .+......++..|+++++.....
T Consensus 168 --------~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 168 --------PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp --------CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred --------ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 12346677788888887766655443 345567777777765432211 11111112444455544444344
Q ss_pred hhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccc
Q 038510 711 NEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEK 790 (871)
Q Consensus 711 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~ 790 (871)
|......+++|+.|+++++......... +..+++|+.|+|+++ .+..+.. .....+++|+.|++++ +.++.
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~L~~-N~l~~ 310 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSM--LHELLRLQEIQLVGG-QLAVVEP-----YAFRGLNYLRVLNVSG-NQLTT 310 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTS--CTTCTTCCEEECCSS-CCSEECT-----TTBTTCTTCCEEECCS-SCCSC
T ss_pred CHHHhcCccccCeeECCCCcCCccChhh--ccccccCCEEECCCC-ccceECH-----HHhcCcccCCEEECCC-CcCce
Confidence 4444444455555555554322211111 244555555555553 2332211 1223445555555555 23444
Q ss_pred cccccCCccccCCCCeEEEecC
Q 038510 791 ICRGSLTAESFCKLKNIRVQRC 812 (871)
Q Consensus 791 l~~~~~~~~~~~~L~~L~l~~C 812 (871)
++...+ ..+++|+.|+++++
T Consensus 311 ~~~~~~--~~l~~L~~L~l~~N 330 (477)
T 2id5_A 311 LEESVF--HSVGNLETLILDSN 330 (477)
T ss_dssp CCGGGB--SCGGGCCEEECCSS
T ss_pred eCHhHc--CCCcccCEEEccCC
Confidence 432221 23455555555544
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.4e-21 Score=219.99 Aligned_cols=356 Identities=15% Similarity=0.148 Sum_probs=252.6
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCC-CC-CCccccccCCcEEEecccC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLL-PL-PSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~-~l-p~~i~~l~~Lr~L~L~~~~ 554 (871)
+.+...++.+..+|. -.++|+.|+++++....+++..|.++++|++|++++|.+. .+ |..+.++++|++|++++|.
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 456666777888887 3489999999999888887777999999999999999986 44 5679999999999999999
Q ss_pred CCC--CcccCCCCCccEEEeeCCCccc-cchh--hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccc
Q 038510 555 LGD--IAIIGDLKKLEILSLRGSDVEK-LVGE--MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGT 629 (871)
Q Consensus 555 i~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 629 (871)
+.. +..++++++|++|++++|.++. .|.. +.++++|++|++++|......|...++++++|++|++++|.+....
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 976 5679999999999999999985 4554 8999999999999985444446555789999999999998765332
Q ss_pred cccccchhcccchhhhccC--CCCCeEEEeeccCCCCCcc---------hhhhccceeEEEEeeecccCC-C---CCCCc
Q 038510 630 VEGLDSERRNASLHELNHL--SKLTSLEILIQDEKTIPSD---------LLFFKILKRYRIFIGYLWSDD-P---ILDGF 694 (871)
Q Consensus 630 ~~~~~~~~~~~~l~~L~~L--~~L~~L~i~~~~~~~~~~~---------l~~l~~L~~L~l~~~~~~~~~-~---~~~~~ 694 (871)
...+..+ .+|+.|++..+....++.. +..+++|+.|++..+...... . .....
T Consensus 171 ------------~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 238 (455)
T 3v47_A 171 ------------EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238 (455)
T ss_dssp ------------TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTT
T ss_pred ------------hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccc
Confidence 1223333 5778888887776655532 123467888887654321100 0 00012
Q ss_pred cceeEEEeccCCcccc-----------hhhHH-hhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEe
Q 038510 695 SRKFKLKITNGANICL-----------NEGHI-MQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVV 762 (871)
Q Consensus 695 ~~l~~L~l~~~~~~~~-----------~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~ 762 (871)
.++..|.+.++..... +..+. ...++|+.|+++++......+.. ++.+++|+.|+++++. +..+.
T Consensus 239 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~-l~~~~ 315 (455)
T 3v47_A 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV--FSHFTDLEQLTLAQNE-INKID 315 (455)
T ss_dssp CCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT--TTTCTTCCEEECTTSC-CCEEC
T ss_pred cceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh--cccCCCCCEEECCCCc-ccccC
Confidence 5677777765531110 00111 12368999999988765544433 3789999999999964 54442
Q ss_pred ecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchH
Q 038510 763 DTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNME 842 (871)
Q Consensus 763 ~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~ 842 (871)
. .....+++|+.|.++++ .+..+.... ...+++|+.|++++| ++..+++. .+.++++|++|++++| +++
T Consensus 316 ~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 316 D-----NAFWGLTHLLKLNLSQN-FLGSIDSRM--FENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp T-----TTTTTCTTCCEEECCSS-CCCEECGGG--GTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCS
T ss_pred h-----hHhcCcccCCEEECCCC-ccCCcChhH--hcCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccc
Confidence 1 13456899999999985 556654322 246899999999998 67777553 4588999999999986 555
Q ss_pred hHhhcCCCCcccCCCcccccccccceeeC
Q 038510 843 VIFAADRGDESSNNNTQVIELTQLRTLEL 871 (871)
Q Consensus 843 ~i~~~~~~~~~~~~~~~~~~~p~L~~l~L 871 (871)
.+... ....+|+|++|.|
T Consensus 385 ~~~~~-----------~~~~l~~L~~L~l 402 (455)
T 3v47_A 385 SVPDG-----------IFDRLTSLQKIWL 402 (455)
T ss_dssp CCCTT-----------TTTTCTTCCEEEC
T ss_pred cCCHh-----------HhccCCcccEEEc
Confidence 54431 1235778887764
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.9e-21 Score=219.42 Aligned_cols=206 Identities=14% Similarity=0.066 Sum_probs=157.9
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
...+++++++++|.+..+|....+++|+.|+++++....++ +..+++|++|++++|.++.+| ++++++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 35678899999998888876668899999999988777764 678899999999999988875 8889999999999
Q ss_pred ccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 552 YCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 552 ~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
+|.++.++ ++.+++|++|++++|.++.+| ++++++|++|++++|..++.++ ++.+++|++|++++|.+...
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l--- 185 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL--- 185 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC---
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee---
Confidence 99888764 888999999999999888875 7889999999999887777763 67889999999988876321
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCc
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGAN 707 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 707 (871)
.+..+++|+.|.+..+....++ +..+++|+.|++..+.... .+ +..++++..|+++++..
T Consensus 186 ------------~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 186 ------------DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ------------CCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCC
T ss_pred ------------ccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcC
Confidence 1566778888888877766653 4566777777776554322 12 33445555666555543
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=5.7e-21 Score=228.46 Aligned_cols=358 Identities=18% Similarity=0.192 Sum_probs=219.9
Q ss_pred ccccccceeecccCCcCcCCCCC--CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcE
Q 038510 471 EKLKVCTAISLIYSNISELPQGF--ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQT 547 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~ 547 (871)
....+++++++++|.+..++... .+++|+.|+++++....+|...|.++++|++|++++|.+..+| ..++++++|++
T Consensus 46 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 125 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125 (680)
T ss_dssp GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCE
T ss_pred hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCE
Confidence 34578999999999988775432 7899999999999888999888999999999999999999776 57999999999
Q ss_pred EEecccCCCC--CcccCCCCCccEEEeeCCCccccchh-h--cCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEeccc
Q 038510 548 LCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLVGE-M--GQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622 (871)
Q Consensus 548 L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i--~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 622 (871)
|++++|.+.. +..++++++|++|++++|.++.++.. + ..+++|++|++++| .+..+++..++.+++|+.|++.+
T Consensus 126 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~ 204 (680)
T 1ziw_A 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNN 204 (680)
T ss_dssp EECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTT
T ss_pred EECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccc
Confidence 9999999876 46788999999999999999988754 3 35689999999998 56666665567666666655544
Q ss_pred CCCCcccc------------cccc---chhcccchhhhccCC--CCCeEEEeeccCCCCC-cchhhhccceeEEEEeeec
Q 038510 623 SPIQWGTV------------EGLD---SERRNASLHELNHLS--KLTSLEILIQDEKTIP-SDLLFFKILKRYRIFIGYL 684 (871)
Q Consensus 623 ~~~~~~~~------------~~~~---~~~~~~~l~~L~~L~--~L~~L~i~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 684 (871)
+.+..... ..+. ..........+..++ +|+.|+++.+....++ ..+..+++|+.|.+..+..
T Consensus 205 ~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp CCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 33211000 0000 000011122344443 4888888877665544 4456677888888765543
Q ss_pred ccC-CCCCCCccceeEEEeccCCcc------cc---hhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeec
Q 038510 685 WSD-DPILDGFSRKFKLKITNGANI------CL---NEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRD 754 (871)
Q Consensus 685 ~~~-~~~~~~~~~l~~L~l~~~~~~------~~---~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 754 (871)
... ...+..++++..|++.++... .+ +......+++|++|+++++......+.. +..+++|++|++++
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~ 362 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM--FTGLINLKYLSLSN 362 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT--TTTCTTCCEEECTT
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhH--hccccCCcEEECCC
Confidence 322 234455677777777654311 11 1122334577888888776433322222 36778888888877
Q ss_pred CC-CceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEE
Q 038510 755 NR-SLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSI 833 (871)
Q Consensus 755 ~~-~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L 833 (871)
|. .+..+.... +.....++|+.|.++++ .+..+.... ...+++|+.|++++|.--..+++ ..+.++++|++|
T Consensus 363 n~~~~~~l~~~~---f~~~~~~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L 435 (680)
T 1ziw_A 363 SFTSLRTLTNET---FVSLAHSPLHILNLTKN-KISKIESDA--FSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEI 435 (680)
T ss_dssp CBSCCCEECTTT---TGGGTTSCCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEE
T ss_pred Cchhhhhcchhh---hcccccCcCceEECCCC-CCCeEChhh--hhCCCCCCEEeCCCCcCccccCc-ccccCcccccEE
Confidence 53 122221110 01111245555555553 233332111 12355555555555432222322 223455555555
Q ss_pred EeccC
Q 038510 834 EVTKC 838 (871)
Q Consensus 834 ~i~~C 838 (871)
++++|
T Consensus 436 ~Ls~n 440 (680)
T 1ziw_A 436 YLSYN 440 (680)
T ss_dssp ECCSC
T ss_pred ecCCC
Confidence 55554
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=5e-21 Score=233.70 Aligned_cols=148 Identities=17% Similarity=0.147 Sum_probs=125.6
Q ss_pred eeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCC-CC-CCccccccCCcEEEecccCC
Q 038510 478 AISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLL-PL-PSSLGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 478 ~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~-~l-p~~i~~l~~Lr~L~L~~~~i 555 (871)
.++.+++++..+|. -.++++.|++++|.+..++...|.++++|++|++++|... .+ |..++++++|++|+|++|.+
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 45566778888887 5689999999999988887777999999999999999544 55 77899999999999999999
Q ss_pred CC--CcccCCCCCccEEEeeCCCccc-cchh--hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCc
Q 038510 556 GD--IAIIGDLKKLEILSLRGSDVEK-LVGE--MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 556 ~~--~~~i~~l~~L~~L~l~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
.. |..++++++|++|++++|.+.. +|.. ++++++|++|++++|...+..+...++++++|++|++++|.+..
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 76 5789999999999999999985 5655 89999999999999854443343458999999999999987643
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.1e-20 Score=218.57 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=126.0
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i 555 (871)
++++++++.+..+|.... ++|+.|+++++....++...|.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 678999999999997665 9999999999999888877799999999999999999976 67899999999999999999
Q ss_pred CCCcccCCCCCccEEEeeCCCccc--cchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCC--cEEecccCCC
Q 038510 556 GDIAIIGDLKKLEILSLRGSDVEK--LVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRL--EELYIGESPI 625 (871)
Q Consensus 556 ~~~~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L--~~L~l~~~~~ 625 (871)
+.++.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..++.+++| ++|++.+|.+
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 885444 89999999999999986 57899999999999999974 443 236778888 9999999876
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=8.3e-21 Score=216.86 Aligned_cols=311 Identities=16% Similarity=0.178 Sum_probs=239.9
Q ss_pred eEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCC
Q 038510 499 KYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGS 575 (871)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~ 575 (871)
+.+.+.++....+|..+ ...+++|++++|.++.+ |..+.++++|++|+|++|.++. +..++++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777777888764 36899999999999976 4689999999999999999977 567999999999999999
Q ss_pred Cccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeE
Q 038510 576 DVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSL 654 (871)
Q Consensus 576 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L 654 (871)
.++.+|.. +.++++|++|++++| .+..+++..+..+++|++|++.+|.+... ....+.++++|+.|
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~~L 157 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYI------------SHRAFSGLNSLEQL 157 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEE------------CTTSSTTCTTCCEE
T ss_pred cCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCcccee------------ChhhccCCCCCCEE
Confidence 99999965 689999999999998 56666666689999999999999876422 22357788999999
Q ss_pred EEeeccCCCCCcc-hhhhccceeEEEEeeecccC-CCCCCCccceeEEEeccCCc-ccchhhHHhhhcccceEEeeccCC
Q 038510 655 EILIQDEKTIPSD-LLFFKILKRYRIFIGYLWSD-DPILDGFSRKFKLKITNGAN-ICLNEGHIMQLKGIEDLSLHGLLD 731 (871)
Q Consensus 655 ~i~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~l~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~ 731 (871)
++..+....++.. +..+++|+.|.+..+..... ...+..++++..|+++++.. ..++..... ..+|++|+++++..
T Consensus 158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l 236 (477)
T 2id5_A 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNL 236 (477)
T ss_dssp EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCC
T ss_pred ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcc
Confidence 9999988887754 57789999999987653332 23455668899999887542 234444333 24899999998754
Q ss_pred ceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEec
Q 038510 732 MKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQR 811 (871)
Q Consensus 732 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~ 811 (871)
. .++.. .+..+++|+.|+|+++. +..+.. .....+++|+.|.+++ +.+..+.... ...+++|+.|++++
T Consensus 237 ~-~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-----~~~~~l~~L~~L~L~~-n~l~~~~~~~--~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 237 T-AVPYL-AVRHLVYLRFLNLSYNP-ISTIEG-----SMLHELLRLQEIQLVG-GQLAVVEPYA--FRGLNYLRVLNVSG 305 (477)
T ss_dssp C-SCCHH-HHTTCTTCCEEECCSSC-CCEECT-----TSCTTCTTCCEEECCS-SCCSEECTTT--BTTCTTCCEEECCS
T ss_pred c-ccCHH-HhcCccccCeeECCCCc-CCccCh-----hhccccccCCEEECCC-CccceECHHH--hcCcccCCEEECCC
Confidence 3 33311 13789999999999964 555422 2345789999999998 4566654333 34689999999999
Q ss_pred CCCCCccCChhhhccCCcccEEEeccCc
Q 038510 812 CDKLKNVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 812 C~~L~~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
| +++.+++ ..+..+++|++|++.+++
T Consensus 306 N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 306 N-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp S-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred C-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 7 7888865 445889999999998765
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.4e-21 Score=217.42 Aligned_cols=302 Identities=17% Similarity=0.109 Sum_probs=226.2
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEee
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLR 573 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~ 573 (871)
.+++|+.|+++++....+|. +..++.|++|++++|.++.+| ++.+++|++|++++|.++.++ ++++++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence 57899999999988887763 788999999999999999886 899999999999999998864 8999999999999
Q ss_pred CCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 574 GSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 574 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
+|.++.+| ++++++|++|++++| .++.++ ++.+++|++|++.+|.... .+ .+..+++|+.
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~-------------~~-~~~~l~~L~~ 174 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKIT-------------KL-DVTPQTQLTT 174 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCC-------------CC-CCTTCTTCCE
T ss_pred CCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCccc-------------cc-ccccCCcCCE
Confidence 99999987 899999999999998 566664 6889999999999884321 11 3678899999
Q ss_pred EEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCce
Q 038510 654 LEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMK 733 (871)
Q Consensus 654 L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 733 (871)
|++..+....+| +..+++|+.|.+..+..... .+..++++..|+++++....+| ...+++|++|+++++....
T Consensus 175 L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 175 LDCSFNKITELD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp EECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC
T ss_pred EECCCCccceec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCC
Confidence 999999888877 66788999999876553332 3555688899999888765655 3456899999998875432
Q ss_pred eccccCCCCCCCCccEEEeecCCCceeEeecC---cccccCCcCCccceeeccccccccccccc-----cCCccccCCCC
Q 038510 734 NVLCEPGREGFPQLKHLEVRDNRSLFCVVDTV---DCATALTAFPLLESLFLEDLGNLEKICRG-----SLTAESFCKLK 805 (871)
Q Consensus 734 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~---~~~~~~~~fp~L~~L~l~~~~~l~~l~~~-----~~~~~~~~~L~ 805 (871)
.+ .+.+++|+.|.+++. +++.+.-.. ........+++|+.|.+++|..+..++.. .+....+++|+
T Consensus 248 -~~----~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 248 -LD----VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp -CC----CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred -cC----HHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 22 356777777766552 343331000 00012356789999999998776666421 11223456677
Q ss_pred eEEEecCCCCCccCChhhhccCCcccEEEeccC
Q 038510 806 NIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKC 838 (871)
Q Consensus 806 ~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 838 (871)
.|+++++ +++.+ + +.++++|+.|+++++
T Consensus 322 ~L~L~~N-~l~~l-~---l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 322 YLYLNNT-ELTEL-D---VSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEECTTC-CCSCC-C---CTTCTTCSEEECCSS
T ss_pred EEECCCC-ccccc-c---cccCCcCcEEECCCC
Confidence 7777665 45554 2 467888999988764
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=5.9e-21 Score=211.99 Aligned_cols=302 Identities=17% Similarity=0.191 Sum_probs=239.1
Q ss_pred cccccceeecccCCcCcCCCCC--CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEE
Q 038510 472 KLKVCTAISLIYSNISELPQGF--ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTL 548 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L 548 (871)
...+++++++.++.+..+|... .+++|+.|.+.++....++...|.++++|++|++++|.+..+| ..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4578999999999999998753 7899999999999888888878999999999999999999775 568999999999
Q ss_pred EecccCCCC-Ccc-cCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 549 CLNYCNLGD-IAI-IGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 549 ~L~~~~i~~-~~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
++++|.++. +.. ++++++|++|++++|.+..++. .+.++++|++|++++| .++.++ ++.+++|++|++.+|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccccc
Confidence 999999988 444 6899999999999999998864 5899999999999997 566665 56789999999988765
Q ss_pred CccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccC
Q 038510 626 QWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNG 705 (871)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~ 705 (871)
. .+....+|+.|++..+....+|... .++|+.|.+..+... ..+.+..++++..|+++++
T Consensus 199 ~-----------------~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 199 S-----------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp S-----------------EEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCC-CCGGGGGCTTCSEEECCSS
T ss_pred c-----------------ccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCc-ccHHHcCCCCccEEECCCC
Confidence 3 2334467889999888777666543 578888888765433 2345556688899999888
Q ss_pred CcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccc
Q 038510 706 ANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDL 785 (871)
Q Consensus 706 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~ 785 (871)
.....++.....+++|++|+++++... .++.. .+.+++|+.|++++| .+..++ .....+++|+.|.++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~~l~~L~~L~L~~n-~l~~~~------~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY--GQPIPTLKVLDLSHN-HLLHVE------RNQPQFDRLENLYLDHN 328 (390)
T ss_dssp CCCEEESGGGTTCSSCCEEECCSSCCC-EEECS--SSCCTTCCEEECCSS-CCCCCG------GGHHHHTTCSEEECCSS
T ss_pred cCCCcChhHccccccCCEEECCCCcCc-ccCcc--cCCCCCCCEEECCCC-cceecC------ccccccCcCCEEECCCC
Confidence 765554444455799999999987543 34433 268999999999997 454432 12356899999999995
Q ss_pred ccccccccccCCccccCCCCeEEEecCC
Q 038510 786 GNLEKICRGSLTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 786 ~~l~~l~~~~~~~~~~~~L~~L~l~~C~ 813 (871)
.++.+ +...+++|+.|++++++
T Consensus 329 -~i~~~-----~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 329 -SIVTL-----KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp -CCCCC-----CCCTTCCCSEEECCSSC
T ss_pred -cccee-----CchhhccCCEEEcCCCC
Confidence 46655 24578999999999974
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=4.9e-20 Score=214.85 Aligned_cols=127 Identities=18% Similarity=0.257 Sum_probs=108.9
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccEE
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEIL 570 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L 570 (871)
.|...++++++++....+|..++ +.|++|++++|.+..+| ..++++++|++|++++|.++. +..++++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 45556899999998888998653 79999999999999877 589999999999999999987 4679999999999
Q ss_pred EeeCCCccccchhhcCCCCCCEEeCCCCCCCCccC-hhhhhCCCCCcEEecccCCCC
Q 038510 571 SLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIP-PNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 571 ~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p-~~~i~~L~~L~~L~l~~~~~~ 626 (871)
++++|.++.+|.. .+++|++|++++| .+..+| +..++++++|++|++++|.+.
T Consensus 106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 106 DVSHNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp ECTTSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred ECCCCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccc
Confidence 9999999999987 8999999999998 566655 234899999999999998764
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=3.9e-20 Score=219.50 Aligned_cols=355 Identities=18% Similarity=0.168 Sum_probs=228.0
Q ss_pred ccccccceeecccCCcCcCCCC--CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcE
Q 038510 471 EKLKVCTAISLIYSNISELPQG--FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQT 547 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~ 547 (871)
..+..+++|++++|.+..++.. ..+++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|. .+.++.+|++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 4567899999999999988753 489999999999999999999899999999999999999998875 5899999999
Q ss_pred EEecccCCCCC--cccCCCCCccEEEeeCCCccc--cchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCc----EEe
Q 038510 548 LCLNYCNLGDI--AIIGDLKKLEILSLRGSDVEK--LVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLE----ELY 619 (871)
Q Consensus 548 L~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~----~L~ 619 (871)
|++++|.++.+ ..++++++|++|++++|.++. +|..++.+++|++|++++| .+..+++..+..+.+++ .++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccchhhhhhhhhhhh
Confidence 99999999883 458999999999999999874 5778899999999999987 45554433333222211 111
Q ss_pred cccCCCCccc---------------------------------------------------------cc-----------
Q 038510 620 IGESPIQWGT---------------------------------------------------------VE----------- 631 (871)
Q Consensus 620 l~~~~~~~~~---------------------------------------------------------~~----------- 631 (871)
+..+.+.... ..
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 1111100000 00
Q ss_pred ---------c-----------------------ccchh----------------------------------cccchhhh
Q 038510 632 ---------G-----------------------LDSER----------------------------------RNASLHEL 645 (871)
Q Consensus 632 ---------~-----------------------~~~~~----------------------------------~~~~l~~L 645 (871)
+ +.... ........
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0 00000 00000111
Q ss_pred ccCCCCCeEEEeeccCCC---CCcchhhhccceeEEEEeee-----------------------cccC--CCCCCCccce
Q 038510 646 NHLSKLTSLEILIQDEKT---IPSDLLFFKILKRYRIFIGY-----------------------LWSD--DPILDGFSRK 697 (871)
Q Consensus 646 ~~L~~L~~L~i~~~~~~~---~~~~l~~l~~L~~L~l~~~~-----------------------~~~~--~~~~~~~~~l 697 (871)
..+++|+.|.+..+.... .+.....+.+|+.+.+..+. .... ...+..+.++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 245678888877554321 12222233344444432221 1111 1122233455
Q ss_pred eEEEeccCCcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCcc
Q 038510 698 FKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLL 777 (871)
Q Consensus 698 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L 777 (871)
..++++.+.....+......+++|+.|+++++.......+. .++.+++|+.|+|++| .++.+... ....+++|
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N-~L~~l~~~-----~f~~l~~L 520 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQC-QLEQLSPT-----AFNSLSSL 520 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECTT-----TTTTCTTC
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCC-ccCCcChH-----HHcCCCCC
Confidence 56666555544444444555678888888776544332211 2367888888888886 46555321 34567888
Q ss_pred ceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccC-CcccEEEeccC
Q 038510 778 ESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGL-QQLQSIEVTKC 838 (871)
Q Consensus 778 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l-~~L~~L~i~~C 838 (871)
+.|.|++ ++++.++...+ ..+++|+.|+++++ ++..+++.. +.++ ++|+.|+++++
T Consensus 521 ~~L~Ls~-N~l~~l~~~~~--~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 521 QVLNMSH-NNFFSLDTFPY--KCLNSLQVLDYSLN-HIMTSKKQE-LQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CEEECTT-SCCCBCCCGGG--TTCTTCCEEECTTS-CCCBCCSSC-TTCCCTTCCEEECTTC
T ss_pred CEEECCC-CcCCCCChhHH--hCCCCCCEEECCCC-cCCCCCHHH-HHhhhCcCCEEEeeCC
Confidence 9999988 46776653333 35788999999886 677776643 3555 68999998653
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-20 Score=220.68 Aligned_cols=301 Identities=17% Similarity=0.193 Sum_probs=238.0
Q ss_pred ccccceeecccCCcCcCCCCC--CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEE
Q 038510 473 LKVCTAISLIYSNISELPQGF--ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLC 549 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~ 549 (871)
..+++.+++.++.+..+|... .+++|++|++.++....++...|.++++|++|+|++|.++.+|. .++++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 567899999999998888753 78999999999999888888789999999999999999997765 579999999999
Q ss_pred ecccCCCC-Ccc-cCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 550 LNYCNLGD-IAI-IGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 550 L~~~~i~~-~~~-i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
|++|.++. |+. ++++++|++|++++|.+..+|. .++++++|++|++++| .+..++ ++.+++|++|++++|.+.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999988 444 6899999999999999998875 5899999999999997 666665 467899999999888653
Q ss_pred ccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCC
Q 038510 627 WGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGA 706 (871)
Q Consensus 627 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~ 706 (871)
.+....+|+.|++..+....++..+ ..+|+.|.+..+... ..+.+..++++..|+++++.
T Consensus 206 -----------------~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~-~~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 206 -----------------TLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp -----------------EEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSC
T ss_pred -----------------cccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC-CChhhccCCCCCEEECCCCc
Confidence 2344567899999888777666554 467888888765432 33455667888999998887
Q ss_pred cccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccc
Q 038510 707 NICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLG 786 (871)
Q Consensus 707 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 786 (871)
....++.....+++|+.|+|+++... .++... +.+|+|+.|+|++|. +..++ .....+++|+.|+++++
T Consensus 266 l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~--~~l~~L~~L~Ls~N~-l~~i~------~~~~~l~~L~~L~L~~N- 334 (597)
T 3oja_B 266 LEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG--QPIPTLKVLDLSHNH-LLHVE------RNQPQFDRLENLYLDHN- 334 (597)
T ss_dssp CCEEESGGGTTCSSCCEEECTTSCCC-EEECSS--SCCTTCCEEECCSSC-CCCCG------GGHHHHTTCSEEECCSS-
T ss_pred cCCCCHHHhcCccCCCEEECCCCCCC-CCCccc--ccCCCCcEEECCCCC-CCccC------cccccCCCCCEEECCCC-
Confidence 65554444456799999999887544 344332 679999999999974 44432 13356899999999995
Q ss_pred cccccccccCCccccCCCCeEEEecCC
Q 038510 787 NLEKICRGSLTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 787 ~l~~l~~~~~~~~~~~~L~~L~l~~C~ 813 (871)
.+..+ +...+++|+.|++++++
T Consensus 335 ~l~~~-----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 335 SIVTL-----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCC-----CCCTTCCCSEEECCSSC
T ss_pred CCCCc-----ChhhcCCCCEEEeeCCC
Confidence 45554 24578999999999875
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.4e-19 Score=194.08 Aligned_cols=290 Identities=17% Similarity=0.213 Sum_probs=173.7
Q ss_pred CceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCC--CcccCCCCCccEEEee
Q 038510 497 QLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLR 573 (871)
Q Consensus 497 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~ 573 (871)
+++.+.+.++....+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|.++. +..++++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4566666665555666543 2567888888888877664 67788888888888888766 4567888888888888
Q ss_pred CCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 574 GSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 574 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
+|.++.+|..+. ++|++|++++| .+..++...++++++|++|++++|.+... +.....+.++++|+.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS----------GIENGAFQGMKKLSY 175 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG----------GBCTTGGGGCTTCCE
T ss_pred CCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc----------CcChhhccCCCCcCE
Confidence 888888877554 78888888876 66677776678888888888887765321 112345677778888
Q ss_pred EEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCce
Q 038510 654 LEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMK 733 (871)
Q Consensus 654 L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 733 (871)
|++..+....+|..+ .++|+.|.+..+ .....+......+++|++|+++++....
T Consensus 176 L~l~~n~l~~l~~~~--~~~L~~L~l~~n-----------------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 176 IRIADTNITTIPQGL--PPSLTELHLDGN-----------------------KITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp EECCSSCCCSCCSSC--CTTCSEEECTTS-----------------------CCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred EECCCCccccCCccc--cccCCEEECCCC-----------------------cCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 888777766666554 245555544322 1111211122234566666666654332
Q ss_pred eccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCc----cccCCCCeEEE
Q 038510 734 NVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTA----ESFCKLKNIRV 809 (871)
Q Consensus 734 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~----~~~~~L~~L~l 809 (871)
..+.. +..+++|+.|+++++ .+..++ .....+++|+.|.+++ +.++.++...+.. ...++|+.|++
T Consensus 231 ~~~~~--~~~l~~L~~L~L~~N-~l~~lp------~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 231 VDNGS--LANTPHLRELHLNNN-KLVKVP------GGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECTTT--GGGSTTCCEEECCSS-CCSSCC------TTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred eChhh--ccCCCCCCEEECCCC-cCccCC------hhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEe
Confidence 22211 255667777777765 333321 1234566677777766 3455554333221 12456677777
Q ss_pred ecCCCCC-ccCChhhhccCCcccEEEeccC
Q 038510 810 QRCDKLK-NVFPLLIGRGLQQLQSIEVTKC 838 (871)
Q Consensus 810 ~~C~~L~-~l~~~~~~~~l~~L~~L~i~~C 838 (871)
.+.|-.. .+++ ..+..+++|+.++++++
T Consensus 301 ~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 301 FSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred ecCcccccccCc-cccccccceeEEEeccc
Confidence 6655221 1222 33466667777776654
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.2e-20 Score=201.15 Aligned_cols=290 Identities=18% Similarity=0.215 Sum_probs=183.3
Q ss_pred CceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccEEEee
Q 038510 497 QLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLR 573 (871)
Q Consensus 497 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~ 573 (871)
+++.+.+.++....+|..+ .+.|++|++++|.+..++ ..+.++++|++|++++|.++. +..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5677777777666777654 357888888888887664 468888888888888888776 4568888888888888
Q ss_pred CCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 574 GSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 574 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
+|.++.+|..+. ++|++|++++| .++.+|...++.+++|++|++.+|.+... +.....+..+ +|+.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENS----------GFEPGAFDGL-KLNY 176 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGG----------GSCTTSSCSC-CCSC
T ss_pred CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccC----------CCCcccccCC-ccCE
Confidence 888888887655 78888888886 56677776678888888888888765321 1122334555 7778
Q ss_pred EEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCce
Q 038510 654 LEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMK 733 (871)
Q Consensus 654 L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 733 (871)
|++..+....+|..+ .++|+.|.+..+... ..+......+++|+.|+++++....
T Consensus 177 L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~-----------------------~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 177 LRISEAKLTGIPKDL--PETLNELHLDHNKIQ-----------------------AIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CBCCSSBCSSCCSSS--CSSCSCCBCCSSCCC-----------------------CCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred EECcCCCCCccCccc--cCCCCEEECCCCcCC-----------------------ccCHHHhcCCCCCCEEECCCCcCCc
Confidence 888777777777654 256666655433211 1111112234667777776654332
Q ss_pred eccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCc----cccCCCCeEEE
Q 038510 734 NVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTA----ESFCKLKNIRV 809 (871)
Q Consensus 734 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~----~~~~~L~~L~l 809 (871)
..+.. +..+++|+.|+++++ .+..++. ....+++|+.|.+++ +.++.++...+.. ..+++|+.|++
T Consensus 232 ~~~~~--~~~l~~L~~L~L~~N-~l~~lp~------~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 232 IENGS--LSFLPTLRELHLDNN-KLSRVPA------GLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp CCTTG--GGGCTTCCEEECCSS-CCCBCCT------TGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred CChhH--hhCCCCCCEEECCCC-cCeecCh------hhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEe
Confidence 22111 256777788887775 3443321 234577778888777 4566554333321 12567888888
Q ss_pred ecCCCCC-ccCChhhhccCCcccEEEeccCc
Q 038510 810 QRCDKLK-NVFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 810 ~~C~~L~-~l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
.++|-.. .+++ ..+.++++|+.|++++|.
T Consensus 302 ~~N~~~~~~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 302 FNNPVPYWEVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSSSCGGGSCG-GGGTTBCCSTTEEC----
T ss_pred ecCcccccccCc-ccccccchhhhhhccccc
Confidence 8876331 3333 345778888888887764
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=2.1e-19 Score=213.20 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=124.9
Q ss_pred eeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCC
Q 038510 478 AISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLG 556 (871)
Q Consensus 478 ~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~ 556 (871)
.++-++.++..+|... -++++.|++++|.+..+++..|.++++|++|+|++|.++.+|+ .+.+|++|++|+|++|+++
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3444445667788654 2589999999999999998889999999999999999998865 6899999999999999998
Q ss_pred C-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCc--cChhhhhCCCCCcEEecccCCCCc
Q 038510 557 D-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKV--IPPNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 557 ~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
. + ..+.++.+|++|++++|+++.+|.. ++++++|++|++++| .+.. .|.. ++.+++|++|++++|.+..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCccccc
Confidence 8 4 4589999999999999999999864 899999999999998 4443 3444 7899999999999987654
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=1.3e-18 Score=196.12 Aligned_cols=282 Identities=21% Similarity=0.171 Sum_probs=175.1
Q ss_pred ccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecc
Q 038510 473 LKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNY 552 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~ 552 (871)
+.+++++++++|.+..+|.. .++|+.|+++++....++.. .+.|++|++++|.++.+| .++++++|++|++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 45677777777777776643 46777888777766655431 257788888888777777 477788888888888
Q ss_pred cCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccc
Q 038510 553 CNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEG 632 (871)
Q Consensus 553 ~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 632 (871)
|.++.++.. ..+|++|++++|.++.+| .++++++|++|++++| .+..+|.. .++|++|++++|.+..
T Consensus 163 N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~~----- 229 (454)
T 1jl5_A 163 NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILEE----- 229 (454)
T ss_dssp SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSS-----
T ss_pred CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCCc-----
Confidence 777663322 247788888888777777 4777888888888776 45555542 2477778877776531
Q ss_pred ccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchh
Q 038510 633 LDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNE 712 (871)
Q Consensus 633 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 712 (871)
+..++.+++|+.|++..+....+|.. +++|+.|.+..+.....+. .++++..|+++++....+|.
T Consensus 230 ---------lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~---~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 230 ---------LPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPE---LPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp ---------CCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSEESC
T ss_pred ---------ccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCc---ccCcCCEEECcCCccCcccC
Confidence 11356777888888887777666653 3677777775543222111 12566677776665333322
Q ss_pred hHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccc
Q 038510 713 GHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKIC 792 (871)
Q Consensus 713 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~ 792 (871)
..++|++|+++++... .++ ...++|+.|+++++ .+..++ ..+++|+.|+++++ .++.++
T Consensus 295 ----~~~~L~~L~l~~N~l~-~i~-----~~~~~L~~L~Ls~N-~l~~lp---------~~~~~L~~L~L~~N-~l~~lp 353 (454)
T 1jl5_A 295 ----LPPNLYYLNASSNEIR-SLC-----DLPPSLEELNVSNN-KLIELP---------ALPPRLERLIASFN-HLAEVP 353 (454)
T ss_dssp ----CCTTCCEEECCSSCCS-EEC-----CCCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSS-CCSCCC
T ss_pred ----cCCcCCEEECcCCcCC-ccc-----CCcCcCCEEECCCC-cccccc---------ccCCcCCEEECCCC-cccccc
Confidence 1256777777665432 211 11247777777774 233221 12577777777763 455543
Q ss_pred cccCCccccCCCCeEEEecCCCCCc
Q 038510 793 RGSLTAESFCKLKNIRVQRCDKLKN 817 (871)
Q Consensus 793 ~~~~~~~~~~~L~~L~l~~C~~L~~ 817 (871)
. .+++|+.|+++++ ++..
T Consensus 354 ~------~l~~L~~L~L~~N-~l~~ 371 (454)
T 1jl5_A 354 E------LPQNLKQLHVEYN-PLRE 371 (454)
T ss_dssp C------CCTTCCEEECCSS-CCSS
T ss_pred c------hhhhccEEECCCC-CCCc
Confidence 2 3677777777776 3444
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.1e-19 Score=191.58 Aligned_cols=229 Identities=22% Similarity=0.286 Sum_probs=155.5
Q ss_pred CCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCC
Q 038510 519 MTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSK 597 (871)
Q Consensus 519 l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 597 (871)
...+++|+++++.+..+|..++++++|++|+|++|.++. |..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 467899999999999999999999999999999999887 6678999999999999999999999999999999999999
Q ss_pred CCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeE
Q 038510 598 CFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRY 677 (871)
Q Consensus 598 ~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L 677 (871)
|..++.+|.. ++. ..+ ...+.++++|+.|++..+....+|..+..+++|+.|
T Consensus 160 n~~~~~~p~~-~~~------~~~---------------------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 160 CPELTELPEP-LAS------TDA---------------------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211 (328)
T ss_dssp ETTCCCCCSC-SEE------EC----------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE
T ss_pred CCCccccChh-Hhh------ccc---------------------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEE
Confidence 8788877765 332 110 112556777777777777766677666556666666
Q ss_pred EEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCC
Q 038510 678 RIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRS 757 (871)
Q Consensus 678 ~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 757 (871)
.+..+... .+|.. ++.+++|+.|++++|..
T Consensus 212 ~L~~N~l~-----------------------~l~~~---------------------------l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 212 KIRNSPLS-----------------------ALGPA---------------------------IHHLPKLEELDLRGCTA 241 (328)
T ss_dssp EEESSCCC-----------------------CCCGG---------------------------GGGCTTCCEEECTTCTT
T ss_pred EccCCCCC-----------------------cCchh---------------------------hccCCCCCEEECcCCcc
Confidence 55432100 11111 13345555555555433
Q ss_pred ceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEec
Q 038510 758 LFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVT 836 (871)
Q Consensus 758 l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~ 836 (871)
...++ .....+++|+.|.+++|.....++. ..+.+++|+.|++++|+.+..+|. .+.++++|+.+.+.
T Consensus 242 ~~~~p------~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 242 LRNYP------PIFGGRAPLKRLILKDCSNLLTLPL---DIHRLTQLEKLDLRGCVNLSRLPS--LIAQLPANCIILVP 309 (328)
T ss_dssp CCBCC------CCTTCCCCCCEEECTTCTTCCBCCT---TGGGCTTCCEEECTTCTTCCCCCG--GGGGSCTTCEEECC
T ss_pred hhhhH------HHhcCCCCCCEEECCCCCchhhcch---hhhcCCCCCEEeCCCCCchhhccH--HHhhccCceEEeCC
Confidence 32221 1223455666666666555555432 234577888888888877777754 34777777777765
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=1.1e-18 Score=189.02 Aligned_cols=291 Identities=15% Similarity=0.159 Sum_probs=208.4
Q ss_pred ccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEeccc
Q 038510 475 VCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYC 553 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~ 553 (871)
.++.+.++++.+..+|... .++++.|++.++....++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 5788899999988888655 47999999999988888877799999999999999999966 678999999999999999
Q ss_pred CCCC-CcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCc--cChhhhhCCCCCcEEecccCCCCccc
Q 038510 554 NLGD-IAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKV--IPPNVISSLSRLEELYIGESPIQWGT 629 (871)
Q Consensus 554 ~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~~ 629 (871)
.++. +..+. ++|++|++++|.+..+|.. +.++++|++|++++| .++. .++..++.+ +|++|++++|.+...+
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 9987 44444 8999999999999999864 889999999999998 4432 334446667 9999999988764321
Q ss_pred cccccchhcccchhhhccCCCCCeEEEeeccCCCCC-cchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcc
Q 038510 630 VEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIP-SDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANI 708 (871)
Q Consensus 630 ~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 708 (871)
..+ .++|+.|++..+....++ ..+..+++|+.|++..+. ..
T Consensus 189 -------------~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-----------------------l~ 230 (332)
T 2ft3_A 189 -------------KDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-----------------------IR 230 (332)
T ss_dssp -------------SSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-----------------------CC
T ss_pred -------------ccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-----------------------CC
Confidence 111 158889999988877665 455667777777764332 11
Q ss_pred cchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccc-cCCcCCccceeecccccc
Q 038510 709 CLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCAT-ALTAFPLLESLFLEDLGN 787 (871)
Q Consensus 709 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~-~~~~fp~L~~L~l~~~~~ 787 (871)
..+......+++|++|+++++... .++.. +..+++|+.|+++++ .+..++....... ....+++|+.|.+.+++
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~- 305 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAG--LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP- 305 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCC-BCCTT--GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-
T ss_pred cCChhHhhCCCCCCEEECCCCcCe-ecChh--hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-
Confidence 222222345688999999887543 44433 378899999999985 4665533222111 11237889999999865
Q ss_pred ccccccccCCccccCCCCeEEEecCC
Q 038510 788 LEKICRGSLTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 788 l~~l~~~~~~~~~~~~L~~L~l~~C~ 813 (871)
+..+...+.....+++|+.|+++++.
T Consensus 306 ~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccCcccccccchhhhhhccccc
Confidence 33221111122357889999988874
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=4e-18 Score=184.47 Aligned_cols=292 Identities=14% Similarity=0.160 Sum_probs=209.9
Q ss_pred cccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecc
Q 038510 474 KVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNY 552 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~ 552 (871)
..++.+.++++.+..+|... .++++.|+++++....++...|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 35788888888888888654 47899999999998888887899999999999999999976 78899999999999999
Q ss_pred cCCCC-CcccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCc--cChhhhhCCCCCcEEecccCCCCcc
Q 038510 553 CNLGD-IAIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKV--IPPNVISSLSRLEELYIGESPIQWG 628 (871)
Q Consensus 553 ~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~~~ 628 (871)
|.++. +..+. ++|++|++++|.+..+|. .+.++++|++|++++|. +.. .....+..+++|++|++.+|.+...
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccC
Confidence 99987 44444 799999999999998875 48899999999999984 432 3344488999999999999876432
Q ss_pred ccccccchhcccchhhhccCCCCCeEEEeeccCCCC-CcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCc
Q 038510 629 TVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTI-PSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGAN 707 (871)
Q Consensus 629 ~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 707 (871)
+ . .+ .++|+.|++..+....+ +..+..+++|+.|++..+. .
T Consensus 187 ~-~------------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----------------------l 228 (330)
T 1xku_A 187 P-Q------------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-----------------------I 228 (330)
T ss_dssp C-S------------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-----------------------C
T ss_pred C-c------------cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-----------------------C
Confidence 1 1 11 26899999998877665 4455667777777764332 1
Q ss_pred ccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccc-cCCcCCccceeeccccc
Q 038510 708 ICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCAT-ALTAFPLLESLFLEDLG 786 (871)
Q Consensus 708 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~-~~~~fp~L~~L~l~~~~ 786 (871)
...+......+++|++|+++++... .++.. +..+++|++|+++++ .+..++...+... ....+++|+.|.+.+.+
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~--l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNKLV-KVPGG--LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSCCS-SCCTT--TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ceeChhhccCCCCCCEEECCCCcCc-cCChh--hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 1222222344688999999887543 44433 378899999999996 4665533222111 12246889999999854
Q ss_pred cccccccccCCccccCCCCeEEEecC
Q 038510 787 NLEKICRGSLTAESFCKLKNIRVQRC 812 (871)
Q Consensus 787 ~l~~l~~~~~~~~~~~~L~~L~l~~C 812 (871)
+..+...+.....+++|+.++++++
T Consensus 305 -~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 305 -VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -ccccccCccccccccceeEEEeccc
Confidence 3333211112235678888888764
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=5.7e-18 Score=190.83 Aligned_cols=139 Identities=18% Similarity=0.285 Sum_probs=73.0
Q ss_pred cccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEeccc
Q 038510 474 KVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYC 553 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~ 553 (871)
.+++++++++|.+..++... ++|++|++++|....+|. |.+++.|++|++++|.++.+|..+ .+|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence 44555555555555444321 455555555555544542 555555555555555555555432 35555555555
Q ss_pred CCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 554 NLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 554 ~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
.++.++.++++++|++|++++|.++.+|... .+|++|++++| .+..+|. ++.+++|++|++++|.+
T Consensus 184 ~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 184 QLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCC
T ss_pred cCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcC
Confidence 5555444555555555555555555554322 35555555554 3445552 45555555555555543
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=1.8e-17 Score=192.54 Aligned_cols=158 Identities=19% Similarity=0.186 Sum_probs=116.5
Q ss_pred ccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccC
Q 038510 475 VCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 554 (871)
+++.++++++.+..+|.... ++|+.|.+++|.+..+|. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 47788888888888887554 788888888887777776 46788888888888888876 67888888888888
Q ss_pred CCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccccc
Q 038510 555 LGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLD 634 (871)
Q Consensus 555 i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 634 (871)
++.++. .+.+|++|++++|+++.+|.. +++|++|++++| .++.+|. .+++|+.|++.+|.+...
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l------ 176 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL------ 176 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC------
Confidence 877544 677888888888888888864 478888888887 5666664 246778888877765311
Q ss_pred chhcccchhhhccCCCCCeEEEeeccCCCCCc
Q 038510 635 SERRNASLHELNHLSKLTSLEILIQDEKTIPS 666 (871)
Q Consensus 635 ~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~ 666 (871)
. ..+++|+.|+++.+.+..+|.
T Consensus 177 --------~--~~~~~L~~L~Ls~N~l~~l~~ 198 (622)
T 3g06_A 177 --------P--MLPSGLQELSVSDNQLASLPT 198 (622)
T ss_dssp --------C--CCCTTCCEEECCSSCCSCCCC
T ss_pred --------c--ccCCCCcEEECCCCCCCCCCC
Confidence 1 234667777777666655554
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.9e-18 Score=183.12 Aligned_cols=149 Identities=23% Similarity=0.378 Sum_probs=92.4
Q ss_pred cccceeecccCCcCcCCCCC-CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecc
Q 038510 474 KVCTAISLIYSNISELPQGF-ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNY 552 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~ 552 (871)
..++.++++++.+..+|... .+++|+.|++.+|....+|.. +.++++|++|++++|.++.+|..++++++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 35666777777776666533 566666666666655555543 4566666666666666666666666666666666666
Q ss_pred cCC-CC-CcccC---------CCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecc
Q 038510 553 CNL-GD-IAIIG---------DLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIG 621 (871)
Q Consensus 553 ~~i-~~-~~~i~---------~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 621 (871)
|.+ +. |..++ ++++|++|++++|.++.+|..++++++|++|++++| .+..+|.. ++.+++|++|+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEECc
Confidence 553 22 33333 366666666666666666666666666666666665 44455554 5666666666666
Q ss_pred cCCC
Q 038510 622 ESPI 625 (871)
Q Consensus 622 ~~~~ 625 (871)
+|.+
T Consensus 238 ~n~~ 241 (328)
T 4fcg_A 238 GCTA 241 (328)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 6543
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=5.9e-18 Score=184.96 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=51.9
Q ss_pred cceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCC
Q 038510 521 GLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLS 596 (871)
Q Consensus 521 ~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~ 596 (871)
.|++|++++|.++.+|. .+.++++|++|++++|.++. +..++++++|++|++++|.++.+|.. ++++++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555554443 45555555555555555544 23355555555555555555555543 4555555555555
Q ss_pred CCCCCCccCh-hhhhCCCCCcEEecccC
Q 038510 597 KCFELKVIPP-NVISSLSRLEELYIGES 623 (871)
Q Consensus 597 ~~~~l~~~p~-~~i~~L~~L~~L~l~~~ 623 (871)
+| .++.+|. ..++++++|++|++++|
T Consensus 133 ~n-~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 133 GN-PYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TC-CCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CC-CCcccCchhhhccCCCCcEEECCCC
Confidence 54 3444444 23445555555555544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=182.92 Aligned_cols=193 Identities=19% Similarity=0.213 Sum_probs=158.7
Q ss_pred eeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCCC
Q 038510 478 AISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNLG 556 (871)
Q Consensus 478 ~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~ 556 (871)
..+.+++.+..+|... .++|+.|+++++....++...|.++++|++|++++|.++.+ |..++++++|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 3566777888888644 36899999999888888887789999999999999999866 467899999999999999998
Q ss_pred C-Ccc-cCCCCCccEEEeeCCCccccch--hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccc
Q 038510 557 D-IAI-IGDLKKLEILSLRGSDVEKLVG--EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEG 632 (871)
Q Consensus 557 ~-~~~-i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 632 (871)
. +.. ++++++|++|++++|.++.+|. .+.++++|++|++++|..++.+++..++.+++|++|++++|.+...
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---- 189 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY---- 189 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE----
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc----
Confidence 7 433 8899999999999999999987 6889999999999998677888776688999999999998876422
Q ss_pred ccchhcccchhhhccCCCCCeEEEeeccCCCCCcch-hhhccceeEEEEeee
Q 038510 633 LDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDL-LFFKILKRYRIFIGY 683 (871)
Q Consensus 633 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l-~~l~~L~~L~l~~~~ 683 (871)
....+.++++|+.|++..+....++..+ ..+++|+.|++..+.
T Consensus 190 --------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 190 --------EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp --------CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred --------CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 2345778889999999988877776654 457889999887654
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=188.37 Aligned_cols=241 Identities=20% Similarity=0.261 Sum_probs=180.5
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 554 (871)
.+.++..+..+..+|... .++++.|++.++.+..++...|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 346667777778888655 378999999999888888778999999999999999998665 678899999999999999
Q ss_pred CCCC--cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 555 LGDI--AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 555 i~~~--~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..+..++.+.+..+++|++|++++|.+..
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 199 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---- 199 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS----
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc----
Confidence 9873 458899999999999999998885 588999999999999888899988778999999999999887642
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCC-CcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccc
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTI-PSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICL 710 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 710 (871)
+..+..+++|+.|+++.+.+..+ +..+..+++|+.|.+..+. ....
T Consensus 200 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-----------------------l~~~ 246 (440)
T 3zyj_A 200 ----------IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-----------------------IQVI 246 (440)
T ss_dssp ----------CCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----------------------CCEE
T ss_pred ----------ccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-----------------------eeEE
Confidence 22467788899999988777665 4455666677766664322 1122
Q ss_pred hhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCC
Q 038510 711 NEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNR 756 (871)
Q Consensus 711 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 756 (871)
+......+++|+.|+|+++... .++.. .+..+++|+.|+|++++
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNLT-LLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCCC-CCCTT-TTSSCTTCCEEECCSSC
T ss_pred ChhhhcCCCCCCEEECCCCCCC-ccChh-HhccccCCCEEEcCCCC
Confidence 2222233467777777665433 22211 13567777777777653
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.3e-17 Score=188.76 Aligned_cols=241 Identities=21% Similarity=0.218 Sum_probs=181.8
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 554 (871)
...++..+..+..+|... .++++.|+++++.+..++...|.++++|++|+|++|.+..++ ..+.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 345666777777777644 378999999999888888778999999999999999998665 678999999999999999
Q ss_pred CCC-C-cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 555 LGD-I-AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 555 i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.++.++.+.+..+++|++|++++|.+..
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---- 210 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---- 210 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc----
Confidence 887 3 458889999999999999998885 588999999999999889999998878999999999999987642
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCC-CcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccc
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTI-PSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICL 710 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 710 (871)
+..+..+++|+.|+++.+.+..+ |..+..+++|+.|.+..+. ....
T Consensus 211 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-----------------------l~~~ 257 (452)
T 3zyi_A 211 ----------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-----------------------VSLI 257 (452)
T ss_dssp ----------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-----------------------CCEE
T ss_pred ----------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-----------------------CceE
Confidence 12467788999999988877665 4445666777777664322 1122
Q ss_pred hhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCC
Q 038510 711 NEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNR 756 (871)
Q Consensus 711 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 756 (871)
+......+++|+.|+|+++... .++.. .+..+++|+.|+|++++
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l~-~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNLS-SLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS-CCCTT-SSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCC-ccChH-HhccccCCCEEEccCCC
Confidence 2222233467777777766433 22221 13567777777777753
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=2e-18 Score=184.96 Aligned_cols=247 Identities=14% Similarity=0.087 Sum_probs=176.1
Q ss_pred CCceEEEecCCCCC---ccCcccccCCCcceEEEecC-CCCC-CCCCccccccCCcEEEecccCCCC--CcccCCCCCcc
Q 038510 496 PQLKYFRIGNDPSL---RIPDNFFTGMTGLKVLDFTE-MHLL-PLPSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLE 568 (871)
Q Consensus 496 ~~L~~L~l~~~~~~---~~~~~~~~~l~~Lr~L~l~~-~~i~-~lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~ 568 (871)
.+++.|++.++... .+|. .|.+++.|++|++++ |.+. .+|..++++++|++|++++|.+.. |..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 46777787776655 3454 477889999999985 7776 788888899999999999998863 56788899999
Q ss_pred EEEeeCCCcc-ccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCC-CCcEEecccCCCCccccccccchhcccchhhhc
Q 038510 569 ILSLRGSDVE-KLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLS-RLEELYIGESPIQWGTVEGLDSERRNASLHELN 646 (871)
Q Consensus 569 ~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 646 (871)
+|++++|.+. .+|..+.++++|++|++++|...+.+|.. ++.++ +|++|++++|.+... ....+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~------------~~~~~~ 195 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK------------IPPTFA 195 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE------------CCGGGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc------------CChHHh
Confidence 9999999888 77888889999999999887444467776 78887 899999888765321 223455
Q ss_pred cCCCCCeEEEeeccCCC-CCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEE
Q 038510 647 HLSKLTSLEILIQDEKT-IPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLS 725 (871)
Q Consensus 647 ~L~~L~~L~i~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 725 (871)
.++ |+.|++..+.... .|..+..+++|+.|.+..+... ..++. ...+++|++|+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA-----------------------FDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC-----------------------CBGGG-CCCCTTCCEEE
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee-----------------------eecCc-ccccCCCCEEE
Confidence 555 8888888766543 4445566677777776543311 11111 22357899999
Q ss_pred eeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccc
Q 038510 726 LHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEK 790 (871)
Q Consensus 726 L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~ 790 (871)
++++......+..+ ..+++|+.|+|+++. +... ......+++|+.|.+.+++.+..
T Consensus 251 Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~-l~~~------ip~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 251 LRNNRIYGTLPQGL--TQLKFLHSLNVSFNN-LCGE------IPQGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCSSCCEECCCGGG--GGCTTCCEEECCSSE-EEEE------CCCSTTGGGSCGGGTCSSSEEES
T ss_pred CcCCcccCcCChHH--hcCcCCCEEECcCCc-cccc------CCCCccccccChHHhcCCCCccC
Confidence 98876654544433 788999999999973 3321 11236789999999999776654
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=7.4e-18 Score=180.27 Aligned_cols=190 Identities=19% Similarity=0.216 Sum_probs=127.3
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC---CCccccccCCcEEEeccc
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL---PSSLGLLQNLQTLCLNYC 553 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l---p~~i~~l~~Lr~L~L~~~ 553 (871)
+.+..+++.+..+|... .++++.|.+.++....+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 35666666777777543 36788888888777777777778888888888888877644 455667788888888888
Q ss_pred CCCC-CcccCCCCCccEEEeeCCCccccch--hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccc
Q 038510 554 NLGD-IAIIGDLKKLEILSLRGSDVEKLVG--EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTV 630 (871)
Q Consensus 554 ~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 630 (871)
.+.. +..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+...++..++.+++|++|++.+|.+...
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 165 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQEN-- 165 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGG--
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccc--
Confidence 7766 4557778888888888887777764 5777888888888876 44444444467778888888877754310
Q ss_pred ccccchhcccchhhhccCCCCCeEEEeeccCCCC-CcchhhhccceeEEE
Q 038510 631 EGLDSERRNASLHELNHLSKLTSLEILIQDEKTI-PSDLLFFKILKRYRI 679 (871)
Q Consensus 631 ~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~-~~~l~~l~~L~~L~l 679 (871)
.....+..+++|+.|+++.+....+ |..+..+++|+.|.+
T Consensus 166 ---------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 166 ---------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp ---------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ---------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 1123455666777777766555443 223333344444433
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.73 E-value=1.1e-17 Score=179.33 Aligned_cols=249 Identities=22% Similarity=0.192 Sum_probs=188.4
Q ss_pred CcceEEEecCCCCC---CCCCccccccCCcEEEecc-cCCCC--CcccCCCCCccEEEeeCCCcc-ccchhhcCCCCCCE
Q 038510 520 TGLKVLDFTEMHLL---PLPSSLGLLQNLQTLCLNY-CNLGD--IAIIGDLKKLEILSLRGSDVE-KLVGEMGQLTQLRL 592 (871)
Q Consensus 520 ~~Lr~L~l~~~~i~---~lp~~i~~l~~Lr~L~L~~-~~i~~--~~~i~~l~~L~~L~l~~~~i~-~lp~~i~~L~~L~~ 592 (871)
..++.|+++++.+. .+|..++++++|++|++++ |.+.. |..++++++|++|++++|.+. .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 77753 678999999999999999998 88899999999999
Q ss_pred EeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCC-CCCeEEEeeccCC-CCCcchhh
Q 038510 593 LDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-KLTSLEILIQDEK-TIPSDLLF 670 (871)
Q Consensus 593 L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~-~L~~L~i~~~~~~-~~~~~l~~ 670 (871)
|++++|...+.+|.. ++.+++|++|++++|.+.. .....+..++ +|+.|++..+... .+|..+..
T Consensus 130 L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~------------~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISG------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEE------------ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred EeCCCCccCCcCChH-HhcCCCCCeEECcCCcccC------------cCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 999998554467766 8999999999999987642 1234577787 8999999877665 56666655
Q ss_pred hccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEE
Q 038510 671 FKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHL 750 (871)
Q Consensus 671 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L 750 (871)
++ |+.|++..+.. ...++.....+++|+.|+++++......+. ...+++|++|
T Consensus 197 l~-L~~L~Ls~N~l-----------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L 249 (313)
T 1ogq_A 197 LN-LAFVDLSRNML-----------------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGL 249 (313)
T ss_dssp CC-CSEEECCSSEE-----------------------EECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEE
T ss_pred Cc-ccEEECcCCcc-----------------------cCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEE
Confidence 54 77776643321 111222233468999999988765433333 3778999999
Q ss_pred EeecCCCceeEeecCcccccCCcCCccceeecccccccc-ccccccCCccccCCCCeEEEecCCCCCccC
Q 038510 751 EVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLE-KICRGSLTAESFCKLKNIRVQRCDKLKNVF 819 (871)
Q Consensus 751 ~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~-~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~ 819 (871)
+++++. +... .......+++|+.|+++++ .+. .+|. .+.+++|+.|++.+++.+...|
T Consensus 250 ~Ls~N~-l~~~-----~p~~l~~l~~L~~L~Ls~N-~l~~~ip~----~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 250 DLRNNR-IYGT-----LPQGLTQLKFLHSLNVSFN-NLCGEIPQ----GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ECCSSC-CEEC-----CCGGGGGCTTCCEEECCSS-EEEEECCC----STTGGGSCGGGTCSSSEEESTT
T ss_pred ECcCCc-ccCc-----CChHHhcCcCCCEEECcCC-cccccCCC----CccccccChHHhcCCCCccCCC
Confidence 999974 4321 1123457899999999995 444 4432 2578999999999988776543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=2.3e-17 Score=174.48 Aligned_cols=194 Identities=23% Similarity=0.375 Sum_probs=97.3
Q ss_pred ccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCC-CCCC-CCccccccCCcEE
Q 038510 473 LKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMH-LLPL-PSSLGLLQNLQTL 548 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~l-p~~i~~l~~Lr~L 548 (871)
+.+++++++++|.+..++. ...+++|+.|.+.++....++...|.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3455555555555554442 2245555555555555544444445555555555555554 4444 3445555555555
Q ss_pred EecccCCCC--CcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 549 CLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 549 ~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
++++|.++. +..+.++++|++|++++|.++.+|.. ++++++|++|++++| .++.+|...+..+++|++|++.+|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcc
Confidence 555555544 23355555555555555555555433 455555555555554 44445544445555555555555543
Q ss_pred CccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcc-hhhhccceeEEE
Q 038510 626 QWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSD-LLFFKILKRYRI 679 (871)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~-l~~l~~L~~L~l 679 (871)
... ....+.++++|+.|++..+....++.. +..+++|+.|++
T Consensus 190 ~~~------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 190 AHV------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CEE------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC
T ss_pred ccc------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec
Confidence 211 112344455555555555554444432 333444444444
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.8e-16 Score=184.10 Aligned_cols=259 Identities=17% Similarity=0.093 Sum_probs=199.5
Q ss_pred CCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeCC
Q 038510 496 PQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGS 575 (871)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~ 575 (871)
.+++.|+++++....+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++.++. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 358899999988888888754 799999999999999987 57899999999999988554 7899999999999
Q ss_pred CccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEE
Q 038510 576 DVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLE 655 (871)
Q Consensus 576 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~ 655 (871)
.++.+|. .+++|++|++++| .++.+|.. +++|++|++++|.+...+ ..+.+|+.|.
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~----------------~~~~~L~~L~ 167 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLP----------------ALPSELCKLW 167 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCC----------------CCCTTCCEEE
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcC----------------CccCCCCEEE
Confidence 9999987 7789999999997 67778864 489999999998764211 1246788999
Q ss_pred EeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCceec
Q 038510 656 ILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMKNV 735 (871)
Q Consensus 656 i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 735 (871)
+..+.+..+|. .+++|+.|++..+. ...+|. .+++|+.|.+.+|... .+
T Consensus 168 L~~N~l~~l~~---~~~~L~~L~Ls~N~-----------------------l~~l~~----~~~~L~~L~L~~N~l~-~l 216 (622)
T 3g06_A 168 AYNNQLTSLPM---LPSGLQELSVSDNQ-----------------------LASLPT----LPSELYKLWAYNNRLT-SL 216 (622)
T ss_dssp CCSSCCSCCCC---CCTTCCEEECCSSC-----------------------CSCCCC----CCTTCCEEECCSSCCS-SC
T ss_pred CCCCCCCCCcc---cCCCCcEEECCCCC-----------------------CCCCCC----ccchhhEEECcCCccc-cc
Confidence 98888877772 35667777664332 112222 2368899999876432 32
Q ss_pred cccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCC
Q 038510 736 LCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKL 815 (871)
Q Consensus 736 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L 815 (871)
+ ..+++|+.|++++| .+..++ ..+++|+.|.++++ .++.++. .+++|+.|++++| ++
T Consensus 217 ~-----~~~~~L~~L~Ls~N-~L~~lp---------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L 273 (622)
T 3g06_A 217 P-----ALPSGLKELIVSGN-RLTSLP---------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QL 273 (622)
T ss_dssp C-----CCCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CC
T ss_pred C-----CCCCCCCEEEccCC-ccCcCC---------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CC
Confidence 2 34689999999996 454431 45799999999994 7776642 5789999999998 68
Q ss_pred CccCChhhhccCCcccEEEeccCcchH
Q 038510 816 KNVFPLLIGRGLQQLQSIEVTKCQNME 842 (871)
Q Consensus 816 ~~l~~~~~~~~l~~L~~L~i~~C~~l~ 842 (871)
+.+|+ .+.++++|+.|++++|+--.
T Consensus 274 ~~lp~--~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 274 TRLPE--SLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CSCCG--GGGGSCTTCEEECCSCCCCH
T ss_pred CcCCH--HHhhccccCEEEecCCCCCC
Confidence 88864 35899999999999987443
No 61
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=7.8e-19 Score=206.41 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=51.5
Q ss_pred CcCCccceeecccccc-ccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEeccCcchHhHhhcCCC
Q 038510 772 TAFPLLESLFLEDLGN-LEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQNMEVIFAADRG 850 (871)
Q Consensus 772 ~~fp~L~~L~l~~~~~-l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~l~~i~~~~~~ 850 (871)
..+++|+.|.+++|.+ +.......+ ...+|+|+.|++++|. +.+.....++.++++|++|++++|+ +.......
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-- 507 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAA-- 507 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHH--
T ss_pred HhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHH--
Confidence 3477888888866543 221100011 1247889999988774 5443223345788999999999998 54322110
Q ss_pred CcccCCCcccccccccceeeC
Q 038510 851 DESSNNNTQVIELTQLRTLEL 871 (871)
Q Consensus 851 ~~~~~~~~~~~~~p~L~~l~L 871 (871)
-...+|+|++|.|
T Consensus 508 --------~~~~l~~L~~L~l 520 (592)
T 3ogk_B 508 --------AVTKLPSLRYLWV 520 (592)
T ss_dssp --------HHHHCSSCCEEEE
T ss_pred --------HHHhcCccCeeEC
Confidence 1235788888864
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=2.6e-16 Score=177.33 Aligned_cols=242 Identities=18% Similarity=0.202 Sum_probs=180.0
Q ss_pred ceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeC
Q 038510 498 LKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRG 574 (871)
Q Consensus 498 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~ 574 (871)
.+.+.+.+.....+|..+. ..+++|+|++|.+..++ ..+.++++|++|+|++|.++. +..+.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4577777777888888653 68999999999999665 679999999999999999987 36789999999999999
Q ss_pred CCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 575 SDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 575 ~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
|.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++.+|...... ....+.++++|+.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i-----------~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYI-----------SEGAFEGLSNLRY 189 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------CTTTTTTCSSCCE
T ss_pred CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCccee-----------CcchhhcccccCe
Confidence 99999986 5889999999999997 678888877899999999999885432111 1234778889999
Q ss_pred EEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCce
Q 038510 654 LEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMK 733 (871)
Q Consensus 654 L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 733 (871)
|++..+....+|. +..+++|+.|++. ++.....+......+++|++|++.++....
T Consensus 190 L~L~~n~l~~~~~-~~~l~~L~~L~Ls-----------------------~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 190 LNLAMCNLREIPN-LTPLIKLDELDLS-----------------------GNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp EECTTSCCSSCCC-CTTCSSCCEEECT-----------------------TSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ecCCCCcCccccc-cCCCcccCEEECC-----------------------CCccCccChhhhccCccCCEEECCCCceeE
Confidence 9999887777764 3455556555553 332223333333446889999998775443
Q ss_pred eccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccc
Q 038510 734 NVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLG 786 (871)
Q Consensus 734 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 786 (871)
..+.. +..+++|+.|+|+++ .+..++. .....+++|+.|+|++++
T Consensus 246 ~~~~~--~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 IERNA--FDNLQSLVEINLAHN-NLTLLPH-----DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTS--STTCTTCCEEECTTS-CCCCCCT-----TTTSSCTTCCEEECCSSC
T ss_pred EChhh--hcCCCCCCEEECCCC-CCCccCh-----hHhccccCCCEEEcCCCC
Confidence 33322 377899999999985 4554421 123457889999988754
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=4.1e-16 Score=176.38 Aligned_cols=242 Identities=17% Similarity=0.183 Sum_probs=180.4
Q ss_pred ceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeC
Q 038510 498 LKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRG 574 (871)
Q Consensus 498 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~ 574 (871)
.+.+.+.+.....+|..+ .+.+++|+|++|.++.+ |..+.++++|++|+|++|.++. +..+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777777777888764 36899999999999965 5779999999999999999987 36789999999999999
Q ss_pred CCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 575 SDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 575 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
|.++.+|.. +..+++|++|++++| .+..+|...+.++++|++|++.+|..... .....+.++++|+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~-----------i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY-----------ISEGAFEGLFNLKY 200 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE-----------ECTTTTTTCTTCCE
T ss_pred CcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc-----------cChhhccCCCCCCE
Confidence 999999865 888999999999997 67888887789999999999988543211 11234778889999
Q ss_pred EEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCce
Q 038510 654 LEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDMK 733 (871)
Q Consensus 654 L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 733 (871)
|++..+....+|. +..+++|+.|++ +++.....++.....+++|+.|++.++....
T Consensus 201 L~L~~n~l~~~~~-~~~l~~L~~L~L-----------------------s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 201 LNLGMCNIKDMPN-LTPLVGLEELEM-----------------------SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp EECTTSCCSSCCC-CTTCTTCCEEEC-----------------------TTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred EECCCCccccccc-ccccccccEEEC-----------------------cCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 9998887776653 334555555544 3333333433334456889999998876544
Q ss_pred eccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccc
Q 038510 734 NVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLG 786 (871)
Q Consensus 734 ~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 786 (871)
..+.. +..+++|+.|+|+++ .+..++. .....+++|+.|+|++++
T Consensus 257 ~~~~~--~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 IERNA--FDGLASLVELNLAHN-NLSSLPH-----DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECTTT--TTTCTTCCEEECCSS-CCSCCCT-----TSSTTCTTCCEEECCSSC
T ss_pred ECHHH--hcCCCCCCEEECCCC-cCCccCh-----HHhccccCCCEEEccCCC
Confidence 33322 377899999999986 4554421 123467889999998754
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=3.2e-16 Score=165.63 Aligned_cols=217 Identities=18% Similarity=0.205 Sum_probs=178.8
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccC-
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCN- 554 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~- 554 (871)
+.++.+++.+..+|... .++|+.|.+.++....++...|..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 56777777888887643 57999999999999989888899999999999999999966 6789999999999999997
Q ss_pred CCC--CcccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 555 LGD--IAIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 555 i~~--~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
++. +..+..+++|++|++++|.++.++ ..+.++++|++|++++| .+..+|...++.+++|++|++++|.+....
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 169 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVP-- 169 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEEC--
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccC--
Confidence 776 467899999999999999999885 56889999999999997 677788776899999999999998764221
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCC-CcchhhhccceeEEEEeeecccCCC-CCCCccceeEEEeccCCc
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTI-PSDLLFFKILKRYRIFIGYLWSDDP-ILDGFSRKFKLKITNGAN 707 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~l~~~~~ 707 (871)
...+..+++|+.|++..+....+ |..+..+++|+.|++..+......+ .+..++++..|++.++..
T Consensus 170 ----------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 170 ----------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ----------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ----------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 23477889999999998887665 6667788999999997765433322 244567889999988763
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=5.2e-16 Score=165.66 Aligned_cols=190 Identities=17% Similarity=0.237 Sum_probs=166.0
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
.+.+++++++.++.+..++....+++|+.|+++++....++. +.++++|++|++++|.+..+| .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 466899999999999988877789999999999998888877 889999999999999999876 68999999999999
Q ss_pred ccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 552 YCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 552 ~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
+|.++.++.+..+++|++|++++|.++.+|. +..+++|++|++++| .+..++. +..+++|++|++++|.+..
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~---- 187 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKISD---- 187 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCC----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccCc----
Confidence 9999887779999999999999999999887 899999999999998 6777776 7899999999999987642
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeee
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGY 683 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~ 683 (871)
+..+..+++|+.|++..+....++. +..+++|+.|.+..+.
T Consensus 188 ----------~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 188 ----------ISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp ----------CGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred ----------ChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 1237788999999999988887774 6778899999987665
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.1e-16 Score=169.01 Aligned_cols=147 Identities=22% Similarity=0.193 Sum_probs=114.2
Q ss_pred eEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEEEecccCCCC----CcccCCCCCccEEEee
Q 038510 499 KYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTLCLNYCNLGD----IAIIGDLKKLEILSLR 573 (871)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~----~~~i~~l~~L~~L~l~ 573 (871)
+.+.+.++....+|..+ .+.|++|++++|.++.+|.. +.++++|++|++++|.++. +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 35677777777788754 36899999999999988865 6899999999999998864 3556778999999999
Q ss_pred CCCccccchhhcCCCCCCEEeCCCCCCCCccCh-hhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCC
Q 038510 574 GSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPP-NVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLT 652 (871)
Q Consensus 574 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 652 (871)
+|.+..+|..+..+++|++|++++| .+..++. ..+..+++|++|++++|.+... ....+..+++|+
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~l~~L~ 153 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA------------FNGIFNGLSSLE 153 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC------------STTTTTTCTTCC
T ss_pred CCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc------------chhhcccCcCCC
Confidence 9999999988999999999999987 5555654 4478899999999988865321 123456677777
Q ss_pred eEEEeeccC
Q 038510 653 SLEILIQDE 661 (871)
Q Consensus 653 ~L~i~~~~~ 661 (871)
.|++..+..
T Consensus 154 ~L~l~~n~l 162 (306)
T 2z66_A 154 VLKMAGNSF 162 (306)
T ss_dssp EEECTTCEE
T ss_pred EEECCCCcc
Confidence 777765543
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=2.2e-18 Score=202.69 Aligned_cols=138 Identities=12% Similarity=0.018 Sum_probs=63.7
Q ss_pred ccCCCCCeEEEeeccCCC--CCcchhhhccceeEEEEeeecccC-CCCCCCccceeEEEecc--------CCccc--chh
Q 038510 646 NHLSKLTSLEILIQDEKT--IPSDLLFFKILKRYRIFIGYLWSD-DPILDGFSRKFKLKITN--------GANIC--LNE 712 (871)
Q Consensus 646 ~~L~~L~~L~i~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~l~~L~l~~--------~~~~~--~~~ 712 (871)
..+++|+.|++..+.... +...+..+++|+.|.+..+..... ......++++..|++.+ +.... ...
T Consensus 286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 356778888877655321 111124567788888765411000 00011245677777733 11100 111
Q ss_pred hHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEee-----cCCCceeEeecCcccccCCcCCccceeeccc
Q 038510 713 GHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVR-----DNRSLFCVVDTVDCATALTAFPLLESLFLED 784 (871)
Q Consensus 713 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~-----~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~ 784 (871)
.+...+++|++|.+ +|..+++.........+|+|+.|++. +|+.+...+...........+++|+.|.+++
T Consensus 366 ~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 366 SVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 22233577777754 33333332211111347888888888 4555542210000000123456666666654
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=5.3e-16 Score=163.91 Aligned_cols=196 Identities=21% Similarity=0.239 Sum_probs=168.1
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
...+++.++++++.+..+|.... ++++.|++++|....++...|.+++.|++|++++|.++.+|.. +.+++|++|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 34578889999999998887553 7899999999998888877899999999999999999987765 789999999999
Q ss_pred ccCCCC-CcccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccc
Q 038510 552 YCNLGD-IAIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGT 629 (871)
Q Consensus 552 ~~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 629 (871)
+|.++. +..+..+++|++|++++|.++.+| ..+..+++|++|++++| .++.+|++.+..+++|+.|++++|.+...+
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccC
Confidence 999988 567889999999999999999998 45899999999999997 778888887889999999999999875322
Q ss_pred cccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEee
Q 038510 630 VEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIG 682 (871)
Q Consensus 630 ~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~ 682 (871)
...+.++++|+.|++..+....+|..+....+|+.+.+..+
T Consensus 165 ------------~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 165 ------------AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp ------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred ------------HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 13467789999999999999999988877778888877543
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1e-15 Score=160.22 Aligned_cols=194 Identities=21% Similarity=0.325 Sum_probs=162.2
Q ss_pred ccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEEEeccc
Q 038510 475 VCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTLCLNYC 553 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L~L~~~ 553 (871)
..+.++++++.+..+|.... ++++.|++.++....++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 56788999999988886543 7899999999988888887899999999999999999988865 478999999999999
Q ss_pred CCCC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccc
Q 038510 554 NLGD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTV 630 (871)
Q Consensus 554 ~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 630 (871)
.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|...++.+++|++|++.+|.+....
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP- 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeC-
Confidence 9987 3 4578999999999999999988754 789999999999997 778888877889999999999998764322
Q ss_pred ccccchhcccchhhhccCCCCCeEEEeeccCCCCCcc-hhhhccceeEEEEee
Q 038510 631 EGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSD-LLFFKILKRYRIFIG 682 (871)
Q Consensus 631 ~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~-l~~l~~L~~L~l~~~ 682 (871)
...+.++++|+.|++..+.+..++.. +..+++|+.|.+..+
T Consensus 174 -----------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 174 -----------EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -----------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 23467889999999998888877765 456778888877544
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.67 E-value=2.7e-17 Score=176.64 Aligned_cols=246 Identities=15% Similarity=0.156 Sum_probs=134.6
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEee
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLR 573 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~ 573 (871)
.+++|+.|+++++....++...|.++++|++|++++|.++..+. +..+++|++|++++|.++.++ .+++|++|+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECC
Confidence 34566777777666666665556677777777777777665443 666777777777777655422 23667777777
Q ss_pred CCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhh-ccCCCCC
Q 038510 574 GSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHEL-NHLSKLT 652 (871)
Q Consensus 574 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~ 652 (871)
+|.++.+|.. .+++|++|++++| .+..+++..++.+++|++|++++|.+.... ...+ ..+++|+
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~~~~~l~~L~ 172 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------FAELAASSDTLE 172 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEE------------GGGGGGGTTTCC
T ss_pred CCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCccc------------HHHHhhccCcCC
Confidence 7777666542 3566777777765 455555444566677777777666553211 1122 3456666
Q ss_pred eEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCc
Q 038510 653 SLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDM 732 (871)
Q Consensus 653 ~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 732 (871)
.|+++.+.+..++... .+++|+.| +++++....+|.. ...+++|+.|+++++...
T Consensus 173 ~L~L~~N~l~~~~~~~-~l~~L~~L-----------------------~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQV-VFAKLKTL-----------------------DLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp EEECTTSCCCEEECCC-CCTTCCEE-----------------------ECCSSCCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred EEECCCCcCccccccc-ccccCCEE-----------------------ECCCCcCCcchhh-hcccCcccEEECcCCccc
Confidence 6666655544333221 23333333 3333332233333 223466677777665332
Q ss_pred eeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeecccccccccc
Q 038510 733 KNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKI 791 (871)
Q Consensus 733 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l 791 (871)
.++.. +..+++|+.|++++++ +..- ........+++|+.|.+.+++.++..
T Consensus 228 -~l~~~--~~~l~~L~~L~l~~N~-~~~~----~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 228 -LIEKA--LRFSQNLEHFDLRGNG-FHCG----TLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp -EECTT--CCCCTTCCEEECTTCC-CBHH----HHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred -chhhH--hhcCCCCCEEEccCCC-ccCc----CHHHHHhccccceEEECCCchhccCC
Confidence 33322 2566777777777653 2100 00112234566666666655555443
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=1.9e-18 Score=196.42 Aligned_cols=351 Identities=16% Similarity=0.094 Sum_probs=227.2
Q ss_pred ccccceeecccCCcCcCCC---CCCCCCceEEEecCCCCCcc----CcccccCCCcceEEEecCCCCCC-CCCcc-cccc
Q 038510 473 LKVCTAISLIYSNISELPQ---GFECPQLKYFRIGNDPSLRI----PDNFFTGMTGLKVLDFTEMHLLP-LPSSL-GLLQ 543 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i-~~l~ 543 (871)
++.+++++++++.+...+. ...+++|++|.++++..... ....+..+++|++|++++|.+.. .+..+ ..+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 3568899999888754321 12678999999999876532 12346778999999999998863 22222 2344
Q ss_pred ----CCcEEEecccCCCC------CcccCCCCCccEEEeeCCCcccc-chhh-----cCCCCCCEEeCCCCCCCCccC--
Q 038510 544 ----NLQTLCLNYCNLGD------IAIIGDLKKLEILSLRGSDVEKL-VGEM-----GQLTQLRLLDLSKCFELKVIP-- 605 (871)
Q Consensus 544 ----~Lr~L~L~~~~i~~------~~~i~~l~~L~~L~l~~~~i~~l-p~~i-----~~L~~L~~L~l~~~~~l~~~p-- 605 (871)
+|++|++++|.++. +..+..+++|++|++++|.+... +..+ ...++|++|++++| .++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence 69999999999874 46788999999999999987633 2222 23678999999998 454422
Q ss_pred --hhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhc-cCCCCCeEEEeeccCCC-----CCcchhhhccceeE
Q 038510 606 --PNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELN-HLSKLTSLEILIQDEKT-----IPSDLLFFKILKRY 677 (871)
Q Consensus 606 --~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~~L~i~~~~~~~-----~~~~l~~l~~L~~L 677 (871)
...+..+++|++|++++|.+....+. .....+. .+++|+.|++..+.... ++..+..+++|+.|
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~--------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 232 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVR--------VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLREL 232 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHH--------HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHH--------HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEE
Confidence 22367789999999999875321100 1111222 36699999999877655 35556678899999
Q ss_pred EEEeeecccC------CCCCCCccceeEEEeccCCccc-----chhhHHhhhcccceEEeeccCCceeccccC---CCCC
Q 038510 678 RIFIGYLWSD------DPILDGFSRKFKLKITNGANIC-----LNEGHIMQLKGIEDLSLHGLLDMKNVLCEP---GREG 743 (871)
Q Consensus 678 ~l~~~~~~~~------~~~~~~~~~l~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---~~~~ 743 (871)
++..+..... .......+++..|+++++.... ++.. ...+++|++|+++++.......... ....
T Consensus 233 ~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 233 ALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV-LRAKESLKELSLAGNELGDEGARLLCETLLEP 311 (461)
T ss_dssp ECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-HHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred eccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH-HhhCCCcceEECCCCCCchHHHHHHHHHhccC
Confidence 9876642211 1111235788899998876433 2222 2336899999998875322111100 0134
Q ss_pred CCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCc---cccCCCCeEEEecCCCCCc---
Q 038510 744 FPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTA---ESFCKLKNIRVQRCDKLKN--- 817 (871)
Q Consensus 744 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~---~~~~~L~~L~l~~C~~L~~--- 817 (871)
.++|++|++++|. +... +..........+++|+.|+++++ .+.+.....+.. ...++|++|++++| ++..
T Consensus 312 ~~~L~~L~L~~n~-l~~~-~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~ 387 (461)
T 1z7x_W 312 GCQLESLWVKSCS-FTAA-CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSC 387 (461)
T ss_dssp TCCCCEEECTTSC-CBGG-GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred CccceeeEcCCCC-CchH-HHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhH
Confidence 4799999999985 3211 00001112335689999999986 444431111110 12679999999998 4653
Q ss_pred --cCChhhhccCCcccEEEeccCc
Q 038510 818 --VFPLLIGRGLQQLQSIEVTKCQ 839 (871)
Q Consensus 818 --l~~~~~~~~l~~L~~L~i~~C~ 839 (871)
++ ..+..+++|++|++++|+
T Consensus 388 ~~l~--~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 388 SSLA--ATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHH--HHHHHCCCCCEEECCSSS
T ss_pred HHHH--HHHHhCCCccEEECCCCC
Confidence 32 234678999999999985
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=2.6e-18 Score=195.31 Aligned_cols=350 Identities=15% Similarity=0.092 Sum_probs=222.9
Q ss_pred ccccceeecccCCcCc-----CCCC-CCCCCceEEEecCCCCCcc-CcccccCCC----cceEEEecCCCCC-----CCC
Q 038510 473 LKVCTAISLIYSNISE-----LPQG-FECPQLKYFRIGNDPSLRI-PDNFFTGMT----GLKVLDFTEMHLL-----PLP 536 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~l~----~Lr~L~l~~~~i~-----~lp 536 (871)
.++++++++++|.+.. ++.. ..+++|++|+++++..... +..++..+. .|++|++++|.++ .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 4578889999888752 2322 2678999999998776542 233444555 6999999999987 357
Q ss_pred CccccccCCcEEEecccCCCC--Ccc-----cCCCCCccEEEeeCCCccc-----cchhhcCCCCCCEEeCCCCCCCCcc
Q 038510 537 SSLGLLQNLQTLCLNYCNLGD--IAI-----IGDLKKLEILSLRGSDVEK-----LVGEMGQLTQLRLLDLSKCFELKVI 604 (871)
Q Consensus 537 ~~i~~l~~Lr~L~L~~~~i~~--~~~-----i~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~~ 604 (871)
..+..+++|++|++++|.++. +.. .....+|++|++++|.++. ++..+..+++|++|++++|. ++..
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchH
Confidence 788899999999999998864 322 2336689999999998874 46667888999999999874 4443
Q ss_pred Chhhhh-----CCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCC-----Ccch-hhhcc
Q 038510 605 PPNVIS-----SLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTI-----PSDL-LFFKI 673 (871)
Q Consensus 605 p~~~i~-----~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~-----~~~l-~~l~~ 673 (871)
....+. ..++|++|++++|.+.... .......+..+++|+.|+++.+..... ...+ ..+++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~--------~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDN--------CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTH--------HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHH--------HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 222222 3669999999988764221 111234567788999999987654321 1111 23678
Q ss_pred ceeEEEEeeeccc-----CCCCCCCccceeEEEeccCCcccch-hhHHhh----hcccceEEeeccCCcee----ccccC
Q 038510 674 LKRYRIFIGYLWS-----DDPILDGFSRKFKLKITNGANICLN-EGHIMQ----LKGIEDLSLHGLLDMKN----VLCEP 739 (871)
Q Consensus 674 L~~L~l~~~~~~~-----~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~----l~~L~~L~L~~~~~~~~----~~~~~ 739 (871)
|+.|++..+.... ....+..++++..|+++++...... ..+... .++|++|++++|..... ++..
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~- 336 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV- 336 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH-
Confidence 8888886553221 0111223567888998887632211 122222 25999999998864322 1111
Q ss_pred CCCCCCCccEEEeecCCCceeEeecCccccc-CCcCCccceeecccccccc-----ccccccCCccccCCCCeEEEecCC
Q 038510 740 GREGFPQLKHLEVRDNRSLFCVVDTVDCATA-LTAFPLLESLFLEDLGNLE-----KICRGSLTAESFCKLKNIRVQRCD 813 (871)
Q Consensus 740 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~-~~~fp~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~L~~L~l~~C~ 813 (871)
+..+++|++|+|+++ .+...... ..... ....++|+.|++++| .+. .++. ....+++|++|++++|+
T Consensus 337 -l~~~~~L~~L~Ls~n-~i~~~~~~-~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~---~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 337 -LAQNRFLLELQISNN-RLEDAGVR-ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAA---TLLANHSLRELDLSNNC 409 (461)
T ss_dssp -HHHCSSCCEEECCSS-BCHHHHHH-HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHH---HHHHCCCCCEEECCSSS
T ss_pred -HhhCCCccEEEccCC-ccccccHH-HHHHHHcCCCCceEEEECCCC-CCChhhHHHHHH---HHHhCCCccEEECCCCC
Confidence 256799999999997 34321000 00001 112679999999996 444 2321 12358999999999984
Q ss_pred CCCccCChhhhc----cCCcccEEEeccCcc
Q 038510 814 KLKNVFPLLIGR----GLQQLQSIEVTKCQN 840 (871)
Q Consensus 814 ~L~~l~~~~~~~----~l~~L~~L~i~~C~~ 840 (871)
+.......+.+ ..++|+.|.+.++..
T Consensus 410 -i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 410 -LGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp -CCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred -CCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 54432222222 234688888877654
No 73
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=1.2e-16 Score=187.79 Aligned_cols=172 Identities=17% Similarity=0.094 Sum_probs=111.1
Q ss_pred ccccceeecccCCcCcCCC-----C-CCCCCceEEEecCCCCCccC----cccccCCCcceEEEecCCCCCCCCCccccc
Q 038510 473 LKVCTAISLIYSNISELPQ-----G-FECPQLKYFRIGNDPSLRIP----DNFFTGMTGLKVLDFTEMHLLPLPSSLGLL 542 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~-----~-~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l 542 (871)
.+++++|++++|.+..... . ..+++|++|.++++....+. ..++.++++|++|++++|.+..+|..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 3567778887776533211 1 15678888888776554222 223456788888888888777777777788
Q ss_pred cCCcEEEecccCCC----C-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCcc-ChhhhhCCCCCc
Q 038510 543 QNLQTLCLNYCNLG----D-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVI-PPNVISSLSRLE 616 (871)
Q Consensus 543 ~~Lr~L~L~~~~i~----~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~-p~~~i~~L~~L~ 616 (871)
++|++|+++++... . +..+..+.+|+.|+++++....+|..+..+++|++|++++|. +... ....+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCC
Confidence 88888888754321 1 356777788888888777666777777788888888888875 3322 223357788888
Q ss_pred EEecccCCCCccccccccchhcccchhhhccCCCCCeEEEe
Q 038510 617 ELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEIL 657 (871)
Q Consensus 617 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~ 657 (871)
+|++.++ +. ..........+++|+.|++.
T Consensus 322 ~L~L~~~-~~-----------~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 322 VLETRNV-IG-----------DRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp EEEEEGG-GH-----------HHHHHHHHHHCTTCCEEEEE
T ss_pred EEeccCc-cC-----------HHHHHHHHHhCCCCCEEEee
Confidence 8887632 11 01111223556778888887
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=5.4e-16 Score=165.53 Aligned_cols=205 Identities=19% Similarity=0.219 Sum_probs=160.5
Q ss_pred eecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCC
Q 038510 479 ISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDI 558 (871)
Q Consensus 479 lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~ 558 (871)
..+..+.+........+++|+.|.+.++....++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.+
T Consensus 24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCC
T ss_pred HHhCCCCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCc
Confidence 33444444443333467899999999988877763 7889999999999999998887 99999999999999999988
Q ss_pred cccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhc
Q 038510 559 AIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERR 638 (871)
Q Consensus 559 ~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 638 (871)
+.++.+++|++|++++|.++.+|. +..+++|++|++++| .+..++. ++.+++|++|++++|.+..
T Consensus 101 ~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~----------- 165 (308)
T 1h6u_A 101 SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD----------- 165 (308)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------
T ss_pred hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC-----------
Confidence 889999999999999999999876 899999999999998 6677766 7899999999999987642
Q ss_pred ccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhh
Q 038510 639 NASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQL 718 (871)
Q Consensus 639 ~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l 718 (871)
+..+..+++|+.|++..+....++. +..+++|+.|++..+. ....+. ...+
T Consensus 166 ---~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-----------------------l~~~~~--l~~l 216 (308)
T 1h6u_A 166 ---LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-----------------------ISDVSP--LANT 216 (308)
T ss_dssp ---CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-----------------------CCBCGG--GTTC
T ss_pred ---ChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-----------------------cCcccc--ccCC
Confidence 2237788999999999888777665 5566777777664332 112221 2345
Q ss_pred cccceEEeeccC
Q 038510 719 KGIEDLSLHGLL 730 (871)
Q Consensus 719 ~~L~~L~L~~~~ 730 (871)
++|+.|++.++.
T Consensus 217 ~~L~~L~l~~N~ 228 (308)
T 1h6u_A 217 SNLFIVTLTNQT 228 (308)
T ss_dssp TTCCEEEEEEEE
T ss_pred CCCCEEEccCCe
Confidence 788888887764
No 75
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=1.3e-16 Score=171.28 Aligned_cols=189 Identities=14% Similarity=0.123 Sum_probs=153.6
Q ss_pred ccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEe
Q 038510 473 LKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCL 550 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L 550 (871)
.++++++++++|.+..++. ...+++|+.|++++|.....++ +..++.|++|++++|.++.+| ..++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 4578999999999987763 3489999999999988876665 889999999999999988665 3489999999
Q ss_pred cccCCCCCcccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhh-hCCCCCcEEecccCCCCcc
Q 038510 551 NYCNLGDIAIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVI-SSLSRLEELYIGESPIQWG 628 (871)
Q Consensus 551 ~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i-~~L~~L~~L~l~~~~~~~~ 628 (871)
++|.+..+.. ..+++|++|++++|.++.++. .++.+++|++|++++| .+..+++..+ ..+++|++|++++|.+...
T Consensus 107 ~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp CSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 9999987322 237889999999999998865 6889999999999998 5555544334 5799999999999986422
Q ss_pred ccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeee
Q 038510 629 TVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGY 683 (871)
Q Consensus 629 ~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~ 683 (871)
.....+++|+.|+++.+....+|..+..+++|+.|++..+.
T Consensus 185 --------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 185 --------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp --------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred --------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 22335789999999999988888888788888888886543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=4.6e-15 Score=155.85 Aligned_cols=142 Identities=21% Similarity=0.335 Sum_probs=103.8
Q ss_pred ccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCC--C
Q 038510 482 IYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGD--I 558 (871)
Q Consensus 482 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~--~ 558 (871)
.+.++..+|... .++|+.|+++++....++...|.+++.|++|++++|.+..++. .+.++++|++|++++|.++. +
T Consensus 15 ~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 93 (276)
T 2z62_A 15 MELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93 (276)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred cCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh
Confidence 344455566533 2568888888877777776667788888888888888876553 67788888888888888766 3
Q ss_pred cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCc--cChhhhhCCCCCcEEecccCCCC
Q 038510 559 AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKV--IPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 559 ~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
..+.++++|++|++++|.+..++. .++++++|++|++++| .+.. +|.. ++.+++|++|++++|.+.
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCC
Confidence 567888888888888888877765 5778888888888876 4444 4554 777888888888777653
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=3e-15 Score=153.61 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=96.4
Q ss_pred cCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCC-CCCCCC-ccccccCCcEEEecc-cCCCC-C
Q 038510 483 YSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMH-LLPLPS-SLGLLQNLQTLCLNY-CNLGD-I 558 (871)
Q Consensus 483 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~lp~-~i~~l~~Lr~L~L~~-~~i~~-~ 558 (871)
+..+..+|. -.++++.|.+.++....++...|.++++|++|++++|. ++.+|. .+.++++|++|++++ |.++. +
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccCccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 334666665 34477777777777777777667777788888888775 766654 567777777777777 66766 2
Q ss_pred -cccCCCCCccEEEeeCCCccccchhhcCCCCCC---EEeCCCCCCCCccChhhhhCCCCCc-EEecccCC
Q 038510 559 -AIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLR---LLDLSKCFELKVIPPNVISSLSRLE-ELYIGESP 624 (871)
Q Consensus 559 -~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~---~L~l~~~~~l~~~p~~~i~~L~~L~-~L~l~~~~ 624 (871)
..+.++++|++|++++|.++.+|. +..+++|+ +|++++|..++.+|++.+..+++|+ +|++++|.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 356677777777777777777776 66666666 7777776566666665566666666 66665554
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.3e-14 Score=151.88 Aligned_cols=177 Identities=23% Similarity=0.327 Sum_probs=153.3
Q ss_pred cccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEE
Q 038510 472 KLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTL 548 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L 548 (871)
.+..+++|++++|.+..++. ...+++|++|.+.++....++..+|.++++|++|++++|.+..+|. .+..+++|++|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 45679999999999988875 3489999999999999999999989999999999999999998875 56899999999
Q ss_pred EecccCCCCC--cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 549 CLNYCNLGDI--AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 549 ~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
++++|.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|+..+..+++|++|++.+|.+
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence 9999999873 4589999999999999999999876 789999999999997 77888887788999999999999876
Q ss_pred CccccccccchhcccchhhhccCCCCCeEEEeeccC
Q 038510 626 QWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDE 661 (871)
Q Consensus 626 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~ 661 (871)
.... ...+..+++|+.|++..+..
T Consensus 194 ~~~~------------~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 194 KRVP------------EGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCC------------TTTTTTCTTCCEEECCSSCB
T ss_pred CcCC------------HHHhccccCCCEEEecCCCe
Confidence 4322 13467788999999987754
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=3.8e-15 Score=156.49 Aligned_cols=197 Identities=20% Similarity=0.258 Sum_probs=162.6
Q ss_pred cccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEE
Q 038510 472 KLKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTL 548 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L 548 (871)
.+.+++++++++|.+..++. ...+++|+.|+++++....++...|.++++|++|++++|.++.++ ..+.++++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 45679999999999987764 347899999999999888888888999999999999999999665 678999999999
Q ss_pred EecccCCCCC--cccCCCCCccEEEeeCCCccc--cchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCc----EEec
Q 038510 549 CLNYCNLGDI--AIIGDLKKLEILSLRGSDVEK--LVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLE----ELYI 620 (871)
Q Consensus 549 ~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~----~L~l 620 (871)
++++|.+..+ ..++.+++|++|++++|.++. +|..+.++++|++|++++| .++.++...+..+++|+ +|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeec
Confidence 9999999873 368999999999999999986 7889999999999999998 67777766577777777 8899
Q ss_pred ccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcch-hhhccceeEEEEee
Q 038510 621 GESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDL-LFFKILKRYRIFIG 682 (871)
Q Consensus 621 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l-~~l~~L~~L~l~~~ 682 (871)
++|.+.... .......+|+.|++..+....+|... ..+++|+.|.+..+
T Consensus 185 s~n~l~~~~-------------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 185 SLNPMNFIQ-------------PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSSCCCEEC-------------TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCcccccC-------------ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 888764322 11222347999999988888887664 66788888877544
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=7.6e-15 Score=155.16 Aligned_cols=173 Identities=25% Similarity=0.330 Sum_probs=135.2
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEec
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~ 551 (871)
...+++.+++++|.+..++....+++|+.|++++|....++. +.++++|++|++++|.++.+|. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 356788888888888887776678888888888887777766 7788888888888888887654 7888888888888
Q ss_pred ccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccc
Q 038510 552 YCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 552 ~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
+|.++.++.++.+++|++|++++|.++.+ ..+..+++|++|++++| .+..+++ +..+++|++|++++|.+..
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~---- 192 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD---- 192 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB----
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC----
Confidence 88888877788888888888888888877 45788888888888887 5666665 6788888888888876531
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCCCCC
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEKTIP 665 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~ 665 (871)
+..+..+++|+.|++..+.....|
T Consensus 193 ----------l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 ----------LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp ----------CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred ----------ChhhccCCCCCEEECcCCcccCCc
Confidence 234677788888888876654443
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.9e-16 Score=180.27 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=152.9
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEee
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLR 573 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~ 573 (871)
.+++|+.|+++++....+++..|.++++|++|+|++|.++..++ ++.+++|++|+|++|.++.++ ..++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence 34577777777777777766667778888888888887775544 777788888888887766532 23678888888
Q ss_pred CCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhc-cCCCCC
Q 038510 574 GSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELN-HLSKLT 652 (871)
Q Consensus 574 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~ 652 (871)
+|.+..+|. ..+++|++|++++| .+..+++..++.+++|++|++++|.+.... ...+. .+++|+
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~l~~~l~~L~ 172 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------FAELAASSDTLE 172 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEEE------------GGGGGGGTTTCC
T ss_pred CCcCCCCCc--cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCcC------------hHHHhhhCCccc
Confidence 887777765 35677888888776 445554444677788888888777654221 22333 567777
Q ss_pred eEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccCCc
Q 038510 653 SLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLLDM 732 (871)
Q Consensus 653 ~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 732 (871)
.|+++.+.+..++... .+++|+.|++ +++....+|+.+ ..+++|+.|+++++...
T Consensus 173 ~L~Ls~N~l~~~~~~~-~l~~L~~L~L-----------------------s~N~l~~~~~~~-~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQV-VFAKLKTLDL-----------------------SSNKLAFMGPEF-QSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EEECTTSCCCEEECCC-CCTTCCEEEC-----------------------CSSCCCEECGGG-GGGTTCSEEECTTSCCC
T ss_pred EEecCCCccccccccc-cCCCCCEEEC-----------------------CCCCCCCCCHhH-cCCCCccEEEecCCcCc
Confidence 7777766655443322 3444444444 333333444443 34578888888876544
Q ss_pred eeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccc
Q 038510 733 KNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLG 786 (871)
Q Consensus 733 ~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~ 786 (871)
.++.. ++.+++|+.|++++++ +.+. ........+++|+.|.+..+.
T Consensus 228 -~lp~~--l~~l~~L~~L~l~~N~-l~c~----~~~~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 228 -LIEKA--LRFSQNLEHFDLRGNG-FHCG----TLRDFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp -EECTT--CCCCTTCCEEECTTCC-BCHH----HHHHHHTTCHHHHHHHHHHHH
T ss_pred -ccchh--hccCCCCCEEEcCCCC-CcCc----chHHHHHhCCCCcEEeccccc
Confidence 34433 3678999999999874 2210 011123457778777776443
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=1.7e-15 Score=162.27 Aligned_cols=194 Identities=15% Similarity=0.204 Sum_probs=139.4
Q ss_pred ccceeecccCCcCc--CCCCC--------CCCCceEEEecCCCCC-ccCcccc-cCCCcceEEEecCCCCCCCCCccccc
Q 038510 475 VCTAISLIYSNISE--LPQGF--------ECPQLKYFRIGNDPSL-RIPDNFF-TGMTGLKVLDFTEMHLLPLPSSLGLL 542 (871)
Q Consensus 475 ~~~~lsl~~~~~~~--l~~~~--------~~~~L~~L~l~~~~~~-~~~~~~~-~~l~~Lr~L~l~~~~i~~lp~~i~~l 542 (871)
.++++++++|.+.. ++... .+++|+.|+++++... .+|..+| ..++.|++|++++|.++..|..++.+
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l 143 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAEL 143 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHH
Confidence 36666676666643 33222 4788888888887665 4566543 78888999999999888778777777
Q ss_pred -----cCCcEEEecccCCCC-C-cccCCCCCccEEEeeCCCccc---cchhh--cCCCCCCEEeCCCCCCCC---ccChh
Q 038510 543 -----QNLQTLCLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEK---LVGEM--GQLTQLRLLDLSKCFELK---VIPPN 607 (871)
Q Consensus 543 -----~~Lr~L~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~---lp~~i--~~L~~L~~L~l~~~~~l~---~~p~~ 607 (871)
++|++|++++|.+.. + ..++++++|++|++++|.+.. +|..+ +++++|++|++++| .++ .++..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 222 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSA 222 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHH
Confidence 889999999998877 3 678889999999999887653 35555 78889999999887 555 33444
Q ss_pred hhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEee
Q 038510 608 VISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIG 682 (871)
Q Consensus 608 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~ 682 (871)
.+..+++|++|++++|.+.... ....+..+++|+.|+++.+....+|..+. ++|+.|++..+
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAA-----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSC-----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS
T ss_pred HHhcCCCCCEEECCCCcCCccc-----------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC
Confidence 4567888999998888764321 11234557788888888888877777663 66777766544
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=9.3e-16 Score=174.48 Aligned_cols=213 Identities=13% Similarity=0.062 Sum_probs=163.9
Q ss_pred ccccceeecccCCcCcCCC--CCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEe
Q 038510 473 LKVCTAISLIYSNISELPQ--GFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCL 550 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L 550 (871)
+++++.|++++|.+..++. ...+++|++|++++|.....++ |..+++|++|++++|.++.+|. .++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 4589999999999988763 3489999999999988876665 8899999999999999887663 389999999
Q ss_pred cccCCCCCcccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccc
Q 038510 551 NYCNLGDIAIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGT 629 (871)
Q Consensus 551 ~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 629 (871)
++|.+..++. ..+++|++|++++|.++.++ ..++++++|++|++++|...+..|....+.+++|++|++++|.+...
T Consensus 107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 9999988422 35789999999999999874 57899999999999998444444555334899999999999986422
Q ss_pred cccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCC
Q 038510 630 VEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGA 706 (871)
Q Consensus 630 ~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~ 706 (871)
.....+++|+.|+++.+....+|..+..+++|+.|++..+.....+..+..++++..|++.++.
T Consensus 185 -------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 -------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp -------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred -------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 2234688999999999999888888888888998888655432222223333444444444443
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=6.9e-15 Score=155.35 Aligned_cols=173 Identities=20% Similarity=0.224 Sum_probs=147.3
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCCCCCcccCCCCCccEEEe
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSL 572 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l 572 (871)
.+++++++.+.++....+|..+. +.+++|++++|.++.+ |..+..+++|++|++++|.++.++..+.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 56789999999988888988753 6899999999999966 4679999999999999999988655689999999999
Q ss_pred eCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCC
Q 038510 573 RGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLT 652 (871)
Q Consensus 573 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 652 (871)
++|.++.+|..+..+++|++|++++| .++.+|++.++.+++|++|++++|.+...+ ...+..+++|+
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~ 151 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLP------------PGLLTPTPKLE 151 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCC------------TTTTTTCTTCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccC------------hhhcccccCCC
Confidence 99999999999999999999999997 778888777899999999999999775322 23467889999
Q ss_pred eEEEeeccCCCCCcch-hhhccceeEEEEee
Q 038510 653 SLEILIQDEKTIPSDL-LFFKILKRYRIFIG 682 (871)
Q Consensus 653 ~L~i~~~~~~~~~~~l-~~l~~L~~L~l~~~ 682 (871)
.|++..+.+..+|... ..+++|+.|.+..+
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 9999999888888764 55777887777544
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.1e-16 Score=171.53 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=38.1
Q ss_pred CCcceEEEecCCCCC-CCCCcc--ccccCCcEEEecccCCCC-CcccCCC-----CCccEEEeeCCCccccc-hhhcCCC
Q 038510 519 MTGLKVLDFTEMHLL-PLPSSL--GLLQNLQTLCLNYCNLGD-IAIIGDL-----KKLEILSLRGSDVEKLV-GEMGQLT 588 (871)
Q Consensus 519 l~~Lr~L~l~~~~i~-~lp~~i--~~l~~Lr~L~L~~~~i~~-~~~i~~l-----~~L~~L~l~~~~i~~lp-~~i~~L~ 588 (871)
+++|++|++++|.++ .+|..+ +.+++|++|++++|.++. |..++.+ ++|++|++++|.+..+| ..+++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 445555555555544 344433 445555555555555443 3333333 44555555555554444 3444555
Q ss_pred CCCEEeCCCC
Q 038510 589 QLRLLDLSKC 598 (871)
Q Consensus 589 ~L~~L~l~~~ 598 (871)
+|++|++++|
T Consensus 174 ~L~~L~Ls~N 183 (312)
T 1wwl_A 174 ALSTLDLSDN 183 (312)
T ss_dssp SCCEEECCSC
T ss_pred CCCEEECCCC
Confidence 5555555544
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2.4e-14 Score=148.03 Aligned_cols=176 Identities=21% Similarity=0.314 Sum_probs=145.2
Q ss_pred ccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEeccc
Q 038510 475 VCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYC 553 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~ 553 (871)
..++++++++.+..+|.... ++++.|++.++....++...|.++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45678888888888887654 78999999998888888878899999999999999998665 45789999999999999
Q ss_pred CCCC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccc
Q 038510 554 NLGD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTV 630 (871)
Q Consensus 554 ~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 630 (871)
.++. + ..+..+++|++|++++|.++.+|.. +.++++|++|++++| .++.+|++.++.+++|++|++.+|.+....
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 171 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVP- 171 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccC-
Confidence 9887 3 4678999999999999999998876 588999999999997 777888866889999999999998764222
Q ss_pred ccccchhcccchhhhccCCCCCeEEEeeccCCCC
Q 038510 631 EGLDSERRNASLHELNHLSKLTSLEILIQDEKTI 664 (871)
Q Consensus 631 ~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~ 664 (871)
...+..+++|+.|++..+.....
T Consensus 172 -----------~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 -----------HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -----------TTTTTTCTTCCEEECCSCCBCTT
T ss_pred -----------HHHHhCCCCCCEEEeeCCceeCC
Confidence 13466778888888887765443
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=6.6e-15 Score=151.05 Aligned_cols=192 Identities=13% Similarity=0.182 Sum_probs=162.2
Q ss_pred cccccceeecccCCcCcCCCC--CCCCCceEEEecCCC-CCccCcccccCCCcceEEEecC-CCCCCCC-CccccccCCc
Q 038510 472 KLKVCTAISLIYSNISELPQG--FECPQLKYFRIGNDP-SLRIPDNFFTGMTGLKVLDFTE-MHLLPLP-SSLGLLQNLQ 546 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~--~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~l~~-~~i~~lp-~~i~~l~~Lr 546 (871)
.+..++.+++++|.+..++.. ..+++|++|++.++. ...++...|.++++|++|++++ |.++.+| ..+.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 456899999999999988763 389999999999986 8889888899999999999998 9999777 5688999999
Q ss_pred EEEecccCCCCCcccCCCCCcc---EEEeeCC-Cccccchh-hcCCCCCC-EEeCCCCCCCCccChhhhhCCCCCcEEec
Q 038510 547 TLCLNYCNLGDIAIIGDLKKLE---ILSLRGS-DVEKLVGE-MGQLTQLR-LLDLSKCFELKVIPPNVISSLSRLEELYI 620 (871)
Q Consensus 547 ~L~L~~~~i~~~~~i~~l~~L~---~L~l~~~-~i~~lp~~-i~~L~~L~-~L~l~~~~~l~~~p~~~i~~L~~L~~L~l 620 (871)
+|++++|.++.++.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++| .++.+|...+.. ++|++|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEc
Confidence 9999999998865588888888 9999999 99999865 88999999 9999997 677899875444 89999999
Q ss_pred ccCC-CCccccccccchhcccchhhhccC-CCCCeEEEeeccCCCCCcchhhhccceeEEE
Q 038510 621 GESP-IQWGTVEGLDSERRNASLHELNHL-SKLTSLEILIQDEKTIPSDLLFFKILKRYRI 679 (871)
Q Consensus 621 ~~~~-~~~~~~~~~~~~~~~~~l~~L~~L-~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l 679 (871)
.+|. +.... ...+.++ ++|+.|++..+....+|.. .+++|+.|.+
T Consensus 187 ~~n~~l~~i~------------~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l 233 (239)
T 2xwt_C 187 NKNKYLTVID------------KDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIA 233 (239)
T ss_dssp TTCTTCCEEC------------TTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEEC
T ss_pred CCCCCcccCC------------HHHhhccccCCcEEECCCCccccCChh--HhccCceeec
Confidence 9984 54211 2346677 8999999999888888876 5777877765
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=2e-14 Score=150.57 Aligned_cols=175 Identities=23% Similarity=0.300 Sum_probs=133.4
Q ss_pred cccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEEEe
Q 038510 472 KLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTLCL 550 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L~L 550 (871)
...+++.+.+.++.+..++....+++|+.|+++++....++ .+..+++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 45678888888888887777677888888888887766654 377888888888888888876644 678888888888
Q ss_pred cccCCCC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCc
Q 038510 551 NYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQW 627 (871)
Q Consensus 551 ~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~ 627 (871)
++|.++. + ..++.+++|++|++++|.++.+|.. ++++++|++|++++| .++.+|+..++.+++|++|++.+|.+..
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 8888877 3 3478888888888888888888765 578888888888887 5667777666788888888888877642
Q ss_pred cccccccchhcccchhhhccCCCCCeEEEeeccC
Q 038510 628 GTVEGLDSERRNASLHELNHLSKLTSLEILIQDE 661 (871)
Q Consensus 628 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~ 661 (871)
.. ...+..+++|+.|++..+..
T Consensus 196 ~~------------~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 196 VP------------DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CC------------TTTTTTCTTCCEEECCSSCB
T ss_pred cC------------HHHHhCCcCCCEEEccCCCc
Confidence 21 12356777888888876644
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=8.6e-15 Score=154.76 Aligned_cols=187 Identities=21% Similarity=0.219 Sum_probs=155.5
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCC
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i 555 (871)
+.++.+..+.+..+.....+++|+.|.+.++....++. +..+++|++|++++|.++.++. +..+++|++|++++|.+
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 33444555555444444468899999999988887765 7889999999999999998887 99999999999999999
Q ss_pred CCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccc
Q 038510 556 GDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDS 635 (871)
Q Consensus 556 ~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 635 (871)
+.++.++.+++|++|++++|.++.++ .+..+++|++|++++| .++.++ . ++.+++|++|++++|.+...
T Consensus 103 ~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~-~-l~~l~~L~~L~L~~N~l~~~------- 171 (291)
T 1h6t_A 103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT-V-LSRLTKLDTLSLEDNQISDI------- 171 (291)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCG-G-GGGCTTCSEEECCSSCCCCC-------
T ss_pred CCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcch-h-hccCCCCCEEEccCCccccc-------
Confidence 99888999999999999999999885 5899999999999998 666664 3 89999999999999876421
Q ss_pred hhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeec
Q 038510 636 ERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYL 684 (871)
Q Consensus 636 ~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 684 (871)
..+..+++|+.|++..+.+..++. +..+++|+.|++..+..
T Consensus 172 -------~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 172 -------VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp -------GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred -------hhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 127889999999999998888764 67888999999987653
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.57 E-value=1.3e-16 Score=187.42 Aligned_cols=346 Identities=16% Similarity=0.073 Sum_probs=197.9
Q ss_pred cccceeecccCCcCcC--CCCC-CCCCceEEEecCCC-CCc-cCcccccCCCcceEEEecCCCCCC-----CCCcccccc
Q 038510 474 KVCTAISLIYSNISEL--PQGF-ECPQLKYFRIGNDP-SLR-IPDNFFTGMTGLKVLDFTEMHLLP-----LPSSLGLLQ 543 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l--~~~~-~~~~L~~L~l~~~~-~~~-~~~~~~~~l~~Lr~L~l~~~~i~~-----lp~~i~~l~ 543 (871)
+++++++++++.+... .... .+++|+.|.+.++. ... ....++.++++|++|++++|.++. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3567777776655321 1111 46788888887652 221 122334567788888888877553 222233566
Q ss_pred CCcEEEecccC--CCC--Cc-ccCCCCCccEEEeeCC-CccccchhhcCCCCCCEEeCCCCC------------------
Q 038510 544 NLQTLCLNYCN--LGD--IA-IIGDLKKLEILSLRGS-DVEKLVGEMGQLTQLRLLDLSKCF------------------ 599 (871)
Q Consensus 544 ~Lr~L~L~~~~--i~~--~~-~i~~l~~L~~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~------------------ 599 (871)
+|++|++++|. +.. +. .+.++++|++|++++| .+..+|..+.++++|++|++..+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 88888888776 221 11 2345678888888877 555667667777777777654431
Q ss_pred -CC-----------CccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCC-CCCc
Q 038510 600 -EL-----------KVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEK-TIPS 666 (871)
Q Consensus 600 -~l-----------~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~-~~~~ 666 (871)
.+ ..+|.. +..+++|++|++.+|.+... .....+.++++|+.|++..+... .++.
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~l~~~-----------~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAV-YSVCSRLTTLNLSYATVQSY-----------DLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGG-HHHHTTCCEEECTTCCCCHH-----------HHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred CCcccccCCcccchhhHHHH-HHhhCCCCEEEccCCCCCHH-----------HHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 11 112221 34567888888877764211 11223567889999999865211 1111
Q ss_pred chhhhccceeEEEEeee--------cccC---CCCCCCccceeEEEeccCCcc-cchhhHHhhhcccceEEee-----cc
Q 038510 667 DLLFFKILKRYRIFIGY--------LWSD---DPILDGFSRKFKLKITNGANI-CLNEGHIMQLKGIEDLSLH-----GL 729 (871)
Q Consensus 667 ~l~~l~~L~~L~l~~~~--------~~~~---~~~~~~~~~l~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~-----~~ 729 (871)
....+++|+.|++..+. .... ......++++..|.+..+... .....+...+++|+.|++. +|
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 12357889999885431 1100 000012466777765444321 1223344457899999998 44
Q ss_pred CCceecccc----CCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCC
Q 038510 730 LDMKNVLCE----PGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLK 805 (871)
Q Consensus 730 ~~~~~~~~~----~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~ 805 (871)
..++..+.. .....+++|+.|+|++ .+... ........+++|+.|.+++|. +.......+ ...+|+|+
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~----~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l-~~~~~~L~ 484 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK----VFEYIGTYAKKMEMLSVAFAG-DSDLGMHHV-LSGCDSLR 484 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH----HHHHHHHHCTTCCEEEEESCC-SSHHHHHHH-HHHCTTCC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC--cccHH----HHHHHHHhchhccEeeccCCC-CcHHHHHHH-HhcCCCcC
Confidence 554422110 0025678999999966 22211 000011237899999998864 322210011 13589999
Q ss_pred eEEEecCCCCCccCChhhhccCCcccEEEeccCcc
Q 038510 806 NIRVQRCDKLKNVFPLLIGRGLQQLQSIEVTKCQN 840 (871)
Q Consensus 806 ~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~~C~~ 840 (871)
+|++++|+. .......++..+++|++|++++|+.
T Consensus 485 ~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 485 KLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp EEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred EEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 999999975 4433333557789999999999976
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=3.3e-14 Score=164.86 Aligned_cols=174 Identities=25% Similarity=0.336 Sum_probs=148.0
Q ss_pred ccccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEe
Q 038510 471 EKLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCL 550 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L 550 (871)
..+..++.|++++|.+..++....+++|+.|.+++|.+..++. +..++.|+.|+|++|.+..+| .++.+++|++|+|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 3456788999999999888877789999999999988887776 788999999999999998876 6889999999999
Q ss_pred cccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccc
Q 038510 551 NYCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTV 630 (871)
Q Consensus 551 ~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 630 (871)
++|.+..++.+..|++|+.|+|++|.+..+ ..+..+++|++|++++| .+..+++ +..+++|++|++++|.+..
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~--- 189 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD--- 189 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB---
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCC---
Confidence 999998888899999999999999999988 56889999999999998 5666665 7899999999999987631
Q ss_pred ccccchhcccchhhhccCCCCCeEEEeeccCCCCC
Q 038510 631 EGLDSERRNASLHELNHLSKLTSLEILIQDEKTIP 665 (871)
Q Consensus 631 ~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~ 665 (871)
+..+..+++|+.|++..+.....|
T Consensus 190 -----------l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 190 -----------LRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -----------CGGGTTCTTCSEEECCSEEEECCC
T ss_pred -----------ChHHccCCCCCEEEccCCcCcCCc
Confidence 245788899999999877655444
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=1e-13 Score=145.17 Aligned_cols=157 Identities=25% Similarity=0.358 Sum_probs=139.0
Q ss_pred CCcccccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCc
Q 038510 468 PDKEKLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQ 546 (871)
Q Consensus 468 ~~~~~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr 546 (871)
+.....++++++++++|.+..++....+++|++|.+.+|....++...|.+++.|++|++++|.++.+|.. ++.+++|+
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33455778999999999998887777899999999999999899988899999999999999999977754 78999999
Q ss_pred EEEecccCCCC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccC
Q 038510 547 TLCLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGES 623 (871)
Q Consensus 547 ~L~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 623 (871)
+|++++|.++. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..+|+..++.+++|++|++.+|
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 99999999988 3 3478999999999999999988865 689999999999998 677788776899999999999998
Q ss_pred CC
Q 038510 624 PI 625 (871)
Q Consensus 624 ~~ 625 (871)
.+
T Consensus 216 ~~ 217 (272)
T 3rfs_A 216 PW 217 (272)
T ss_dssp CB
T ss_pred Cc
Confidence 75
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=9.5e-14 Score=143.48 Aligned_cols=154 Identities=19% Similarity=0.320 Sum_probs=137.0
Q ss_pred cccccceeecccCCcCcCCCC--CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEE
Q 038510 472 KLKVCTAISLIYSNISELPQG--FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTL 548 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L 548 (871)
.+..++.+++++|.+..++.. ..+++|+.|++++|....++...|.+++.|++|++++|.++.+| ..+..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 446899999999999877653 47899999999999998888888999999999999999999877 457899999999
Q ss_pred EecccCCCC-C-cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 549 CLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 549 ~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
+|++|.++. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++| .+..+|+..+..+++|++|++.+|.+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 999999988 3 347899999999999999999987 5899999999999998 77788877789999999999999986
Q ss_pred C
Q 038510 626 Q 626 (871)
Q Consensus 626 ~ 626 (871)
.
T Consensus 192 ~ 192 (251)
T 3m19_A 192 D 192 (251)
T ss_dssp C
T ss_pred e
Confidence 4
No 94
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=1e-13 Score=140.90 Aligned_cols=149 Identities=23% Similarity=0.314 Sum_probs=128.7
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L~L~~~~ 554 (871)
.+.++.+++.+..+|... .++|+.|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456777888888888655 38999999999988888777789999999999999999988754 6889999999999999
Q ss_pred CCCC--cccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 555 LGDI--AIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 555 i~~~--~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
++.+ ..+..+++|++|++++|.++.+|..+.++++|++|++++| .+..+|...+..+++|++|++.+|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9873 3478899999999999999999999999999999999997 777888777888999999999988764
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=6.4e-14 Score=140.27 Aligned_cols=147 Identities=24% Similarity=0.413 Sum_probs=123.4
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEEEecccCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i 555 (871)
+.+...++.+..+|... .++|+.|++.++....++...|.+++.|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45666667777777544 56899999999888888888889999999999999999987754 68899999999999998
Q ss_pred CC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 556 GD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 556 ~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
+. + ..++++++|++|++++|.++.+|.. +.++++|++|++++| .++.+|...+..+++|++|++.+|.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe
Confidence 87 3 3478999999999999999988865 688999999999997 67778877678899999999988864
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=5.7e-14 Score=139.27 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=65.6
Q ss_pred ccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCC-CCCccccccCCcEEEec
Q 038510 473 LKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLP-LPSSLGLLQNLQTLCLN 551 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~l~~Lr~L~L~ 551 (871)
+.+++++++++|.+..++....+++|++|.+.++....++ .+..++.|++|++++|.++. .|..++.+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 3455555555555555443334444455544444332222 13444444444444444442 34444444444444444
Q ss_pred ccCCCC--CcccCCCCCccEEEeeCCC-ccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccC
Q 038510 552 YCNLGD--IAIIGDLKKLEILSLRGSD-VEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGES 623 (871)
Q Consensus 552 ~~~i~~--~~~i~~l~~L~~L~l~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~ 623 (871)
+|.++. +..++.+++|++|++++|. +..+| .+..+++|++|++++| .+..++ . +..+++|++|++.+|
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~-~-l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR-G-IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT-T-GGGCSSCCEEEECBC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH-H-hccCCCCCEEEeeCc
Confidence 444433 3344444444444444443 44443 3444444444444443 333333 1 344444444444444
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.4e-13 Score=138.89 Aligned_cols=148 Identities=20% Similarity=0.350 Sum_probs=125.1
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i 555 (871)
+.+..+++.+..+|.... ++++.|.+.++.+..++...|.+++.|++|+|++|.++.+ |..+.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 467777888888886553 7899999999888888887889999999999999999865 67899999999999999999
Q ss_pred CC-Cc-ccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 556 GD-IA-IIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 556 ~~-~~-~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
+. +. .+..+++|++|++++|.++.++ ..+..+++|++|++++| .++.++++.+..+++|++|++.+|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 87 33 3688999999999999999885 56888999999999997 677788776888999999999888753
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=1.4e-14 Score=156.87 Aligned_cols=122 Identities=19% Similarity=0.198 Sum_probs=70.0
Q ss_pred ceEEEecCCCCCccCcccccCC--CcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC---CcccCCCCCccEEEe
Q 038510 498 LKYFRIGNDPSLRIPDNFFTGM--TGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD---IAIIGDLKKLEILSL 572 (871)
Q Consensus 498 L~~L~l~~~~~~~~~~~~~~~l--~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~---~~~i~~l~~L~~L~l 572 (871)
++.+++.++... +..+..+ +.+++|+++++.+...+..+..+++|++|++++|.+.. +..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 456666554322 2334444 56666777666666555555566666666666666543 234566666666666
Q ss_pred eCCCcc-ccchhhcCCCCCCEEeCCCCCCCCc--cChhhhhCCCCCcEEecccC
Q 038510 573 RGSDVE-KLVGEMGQLTQLRLLDLSKCFELKV--IPPNVISSLSRLEELYIGES 623 (871)
Q Consensus 573 ~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~~L~~L~l~~~ 623 (871)
++|.++ ..|..++.+++|++|++++|..++. ++.. +.++++|++|++.+|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 666555 4455566666666666666644442 3322 455666666666655
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=3.7e-14 Score=164.49 Aligned_cols=189 Identities=21% Similarity=0.209 Sum_probs=158.1
Q ss_pred ccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccC
Q 038510 475 VCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 554 (871)
.+.++.+..+.+..+.....+++|+.|.+.++.+..++. +..+++|+.|+|++|.+..+|. +..+++|++|+|++|.
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 444555555555555555578899999999988887764 7889999999999999998876 8999999999999999
Q ss_pred CCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccccc
Q 038510 555 LGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLD 634 (871)
Q Consensus 555 i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 634 (871)
+..++.++.+++|++|+|++|.+..+| .+..+++|+.|++++| .+..++ . ++.+++|+.|++++|.+...
T Consensus 99 l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~-~-l~~l~~L~~L~Ls~N~l~~~------ 168 (605)
T 1m9s_A 99 IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDIT-V-LSRLTKLDTLSLEDNQISDI------ 168 (605)
T ss_dssp CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCG-G-GGSCTTCSEEECCSSCCCCC------
T ss_pred CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCch-h-hcccCCCCEEECcCCcCCCc------
Confidence 999889999999999999999999886 4899999999999998 666663 3 89999999999999876421
Q ss_pred chhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecc
Q 038510 635 SERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLW 685 (871)
Q Consensus 635 ~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 685 (871)
..+..+++|+.|+++.+.+..++ .+..+++|+.|.+..+...
T Consensus 169 --------~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 169 --------VPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp --------GGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred --------hhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence 12788999999999998888775 4678899999998766543
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=6.5e-14 Score=145.56 Aligned_cols=171 Identities=22% Similarity=0.219 Sum_probs=133.9
Q ss_pred ccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecc
Q 038510 473 LKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNY 552 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~ 552 (871)
..++..+.+..+.+..++....+++|+.|.+.++....++ .+..+++|++|++++|.++.+|. +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 4456667777777777665557888888888888777776 37788899999999999888877 88899999999999
Q ss_pred cCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccc
Q 038510 553 CNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEG 632 (871)
Q Consensus 553 ~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 632 (871)
|.++.++.+.. .+|++|++++|.++.+| .+.++++|++|++++| .++.+|. ++.+++|++|++++|.+..
T Consensus 95 N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~----- 164 (263)
T 1xeu_A 95 NRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN----- 164 (263)
T ss_dssp SCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB-----
T ss_pred CccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc-----
Confidence 98888555555 88999999999888876 4888999999999887 6677763 7888999999998887632
Q ss_pred ccchhcccchhhhccCCCCCeEEEeeccCCCCC
Q 038510 633 LDSERRNASLHELNHLSKLTSLEILIQDEKTIP 665 (871)
Q Consensus 633 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~ 665 (871)
+..+..+++|+.|++..+.....|
T Consensus 165 ---------~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 ---------TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ---------CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ---------hHHhccCCCCCEEeCCCCcccCCc
Confidence 145677888888888877655444
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=6.8e-13 Score=144.33 Aligned_cols=239 Identities=18% Similarity=0.148 Sum_probs=152.8
Q ss_pred eEEEecCCCCCCCCCccccccCCcEEEecccCCCCC--cccCCCCCccEEEeeCCCcc-ccch-hhcCCCCCCEEeCCCC
Q 038510 523 KVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDI--AIIGDLKKLEILSLRGSDVE-KLVG-EMGQLTQLRLLDLSKC 598 (871)
Q Consensus 523 r~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i~-~lp~-~i~~L~~L~~L~l~~~ 598 (871)
++++.++++++++|..+ ..++++|+|++|+|+.+ ..+.++++|++|++++|.+. .+|. .+.++++|+++....+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56778888888888766 35778888888877763 34677778888888777764 3553 3566777766544444
Q ss_pred CCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcch-hhhccceeE
Q 038510 599 FELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDL-LFFKILKRY 677 (871)
Q Consensus 599 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l-~~l~~L~~L 677 (871)
+.+..++++.+..+++|++|++.+|.+. .++... ....++..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~------------------------------------~~~~~~~~~~~~l~~l 133 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIK------------------------------------HLPDVHKIHSLQKVLL 133 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCS------------------------------------SCCCCTTCCBSSCEEE
T ss_pred CcccccCchhhhhccccccccccccccc------------------------------------cCCchhhcccchhhhh
Confidence 4666676665666777777776665542 222110 011122222
Q ss_pred EEEeeecccCCCCCCCccceeEEEeccCCcccchh-hHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCC
Q 038510 678 RIFIGYLWSDDPILDGFSRKFKLKITNGANICLNE-GHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNR 756 (871)
Q Consensus 678 ~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 756 (871)
.+..+.. +. .++. .+......++.|+++++. ++.++... ...++|+.|.+.+++
T Consensus 134 ~l~~~~~------------i~----------~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~--f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 134 DIQDNIN------------IH----------TIERNSFVGLSFESVILWLNKNG-IQEIHNSA--FNGTQLDELNLSDNN 188 (350)
T ss_dssp EEESCTT------------CC----------EECTTSSTTSBSSCEEEECCSSC-CCEECTTS--STTEEEEEEECTTCT
T ss_pred hhccccc------------cc----------cccccchhhcchhhhhhcccccc-ccCCChhh--ccccchhHHhhccCC
Confidence 2211100 00 1111 111222467788887754 34444332 356789999999888
Q ss_pred CceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEEEec
Q 038510 757 SLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVT 836 (871)
Q Consensus 757 ~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~ 836 (871)
.++.++.. ....+++|+.|++++ +.++.++ ...+.+|++|.+.+|.+++.+|+ +..+++|+.+++.
T Consensus 189 ~l~~i~~~-----~f~~l~~L~~LdLs~-N~l~~lp-----~~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 189 NLEELPND-----VFHGASGPVILDISR-TRIHSLP-----SYGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp TCCCCCTT-----TTTTEECCSEEECTT-SCCCCCC-----SSSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred cccCCCHH-----HhccCcccchhhcCC-CCcCccC-----hhhhccchHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence 88877432 335689999999998 5777764 34688999999999999999976 3789999999996
Q ss_pred cC
Q 038510 837 KC 838 (871)
Q Consensus 837 ~C 838 (871)
+.
T Consensus 255 ~~ 256 (350)
T 4ay9_X 255 YP 256 (350)
T ss_dssp CH
T ss_pred CC
Confidence 53
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.4e-13 Score=137.19 Aligned_cols=148 Identities=16% Similarity=0.314 Sum_probs=118.1
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCcc-CcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRI-PDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~ 554 (871)
+.++++++.+..+|... .+.++.|.+++|.+..+ +..+|.+++.|++|++++|.++.++. .+..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 57888888888887644 45678888888887776 44667888999999999998886664 68888999999999998
Q ss_pred CCC-C-cccCCCCCccEEEeeCCCcccc-chhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 555 LGD-I-AIIGDLKKLEILSLRGSDVEKL-VGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 555 i~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
++. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++| .++.+++..+..+++|++|++.+|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 877 3 4488889999999999988877 466888899999999887 666675555788888999988888653
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=1.9e-13 Score=135.49 Aligned_cols=149 Identities=19% Similarity=0.266 Sum_probs=106.6
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC--CcccCCCCCccEEE
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILS 571 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~ 571 (871)
.+++|+.|.++++....++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++. +..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 46677888888777766662 677788888888888666554 67778888888888888765 67777888888888
Q ss_pred eeCCCccc-cchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCC
Q 038510 572 LRGSDVEK-LVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSK 650 (871)
Q Consensus 572 l~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 650 (871)
+++|.++. .|..++.+++|++|++++|..++.+|. +..+++|++|++++|.+.. +..+..+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~--------------~~~l~~l~~ 182 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD--------------YRGIEDFPK 182 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC--------------CTTGGGCSS
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC--------------hHHhccCCC
Confidence 88887774 566677888888888888754666663 6778888888887776531 124566777
Q ss_pred CCeEEEeeccC
Q 038510 651 LTSLEILIQDE 661 (871)
Q Consensus 651 L~~L~i~~~~~ 661 (871)
|+.|++..+.+
T Consensus 183 L~~L~l~~N~i 193 (197)
T 4ezg_A 183 LNQLYAFSQTI 193 (197)
T ss_dssp CCEEEECBC--
T ss_pred CCEEEeeCccc
Confidence 77777776543
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=4.8e-14 Score=150.71 Aligned_cols=177 Identities=12% Similarity=0.067 Sum_probs=117.7
Q ss_pred CCCCceEEEecCCCCCccCcccc--cCCCcceEEEecCCCCCCC-C----CccccccCCcEEEecccCCCC--CcccCCC
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFF--TGMTGLKVLDFTEMHLLPL-P----SSLGLLQNLQTLCLNYCNLGD--IAIIGDL 564 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~--~~l~~Lr~L~l~~~~i~~l-p----~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l 564 (871)
.+++|+.|.+.++......+..+ ..+++|++|++++|.+... | ..+..+++|++|++++|.+.. +..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 44668888888776654433334 7788888888888887742 2 223467888888888888766 3567788
Q ss_pred CCccEEEeeCCCccc---cchh--hcCCCCCCEEeCCCCCCCCccChh---hhhCCCCCcEEecccCCCCccccccccch
Q 038510 565 KKLEILSLRGSDVEK---LVGE--MGQLTQLRLLDLSKCFELKVIPPN---VISSLSRLEELYIGESPIQWGTVEGLDSE 636 (871)
Q Consensus 565 ~~L~~L~l~~~~i~~---lp~~--i~~L~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l~~~~~~~~~~~~~~~~ 636 (871)
++|++|++++|.+.. +|.. ++++++|++|++++| .++.+|.. .++.+++|++|++++|.+....+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~----- 242 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP----- 242 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-----
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh-----
Confidence 888888888887653 4332 367888888888887 55554432 346778888888888876432111
Q ss_pred hcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEee
Q 038510 637 RRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIG 682 (871)
Q Consensus 637 ~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~ 682 (871)
.+..+..+++|+.|+++.+.+..+|..+ .++|+.|++..+
T Consensus 243 ----~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 243 ----SAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSN 282 (310)
T ss_dssp ----CCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSC
T ss_pred ----hHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCC
Confidence 1222333468888888887777777765 267777766544
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=9.3e-13 Score=150.97 Aligned_cols=180 Identities=18% Similarity=0.206 Sum_probs=139.1
Q ss_pred ccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccC
Q 038510 475 VCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 475 ~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~ 554 (871)
+++.+++++|.+..+|... +++|+.|++++|.+..+| ..+++|++|++++|.++.+|. +++ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6788899999888888755 488999999998888887 246889999999999998888 665 89999999999
Q ss_pred CCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCcccccccc
Q 038510 555 LGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLD 634 (871)
Q Consensus 555 i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 634 (871)
++.++. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. ++ ++|+.|++++|.+...+ . +.
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~lp-~-~~ 199 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLESLP-A-VP 199 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSSCC-C-CC
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCchh-h-HH
Confidence 888544 78899999999999998887 6789999999987 6677887 44 88999999998775222 1 11
Q ss_pred chhcccchhhh-ccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEee
Q 038510 635 SERRNASLHEL-NHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIG 682 (871)
Q Consensus 635 ~~~~~~~l~~L-~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~ 682 (871)
..| .....|+.|+++.|.+..+|..+..+++|+.|++..+
T Consensus 200 --------~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 200 --------VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp ----------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS
T ss_pred --------HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC
Confidence 011 1223348899998888888888767788887777543
No 106
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=2e-12 Score=141.23 Aligned_cols=266 Identities=14% Similarity=0.143 Sum_probs=157.2
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccc-cc--cc------ch-----------
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNL-FE--KS------HE----------- 207 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~--~~------~~----------- 207 (871)
.....|+||+++++++.+ +.. +++.|+|++|+|||||++++.+....... ++ .. +.
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 345679999999999999 765 69999999999999999999987542211 11 00 00
Q ss_pred -----------------------------------hhHHHHHHHHHHcC--CcEEEEEecCCCcc-----ChhhhccccC
Q 038510 208 -----------------------------------TVRAGRLLERLKKE--KKILIILDDIWGGL-----DLEAIGIPLA 245 (871)
Q Consensus 208 -----------------------------------~~~~~~l~~~l~~~--kr~LlvlDdv~~~~-----~~~~l~~~l~ 245 (871)
......+.+.+.+. ++++|||||++... +|..+...+.
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~ 165 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY 165 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence 01123344444431 38999999996532 2322222222
Q ss_pred CCCCCcEEEEeecCcchhc----------cccC-CcceeeccCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHcCC
Q 038510 246 DDNSGCKVLLTARSQDVLS----------CKMD-CQQNFFVDVLNEKEAWSLFRKMTGD-CIENGELKSVATEIVKECAG 313 (871)
Q Consensus 246 ~~~~gs~iivTtr~~~va~----------~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~G 313 (871)
+...+.++|+|++...... ...+ ....+.+.+|+.+++.+++...+.. ...... ...|++.|+|
T Consensus 166 ~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G 241 (357)
T 2fna_A 166 DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGG 241 (357)
T ss_dssp HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCS
T ss_pred HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCC
Confidence 2224678999999754211 0111 1357999999999999999876431 111122 1789999999
Q ss_pred chhHHHHHHHHHhc-CChhHHHH-HHHHhcCCCCCCccchhhhhheecc-ccc--ccCChhhHHHHHHhhcccccchhhh
Q 038510 314 LPIAIVPVARALIN-KRLFEWKD-SLLELRRPSFRNISGTLEVAYKSIE-LSY--NHLNREELKRTFLLIGYAFISCVKD 388 (871)
Q Consensus 314 lPLai~~~~~~l~~-~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~lk~cfl~~s~fp~~~~~~ 388 (871)
+|+++..++..+.. .+...|.. +.+... ..+...+. +.+ ..||+. .+..+..+|.-+ +...
T Consensus 242 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~g~--~~~~ 307 (357)
T 2fna_A 242 IPGWLTYFGFIYLDNKNLDFAINQTLEYAK-----------KLILKEFENFLHGREIARKR-YLNIMRTLSKCG--KWSD 307 (357)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----------HHHHHHHHHHHTTCGGGHHH-HHHHHHHHTTCB--CHHH
T ss_pred CHHHHHHHHHHHccccchHHHHHHHHHHHH-----------HHHHHHHHHHhhccccccHH-HHHHHHHHHcCC--CHHH
Confidence 99999999987653 34434422 111100 00111111 111 157776 788888887732 3333
Q ss_pred HHHHhh-cccccccccchHHHHHHHHHHHHHHHHhcccccCCCcccee-hhHHHHHHH
Q 038510 389 VLYHGM-GLGLFQNINTSEEAWDRAHTLVDKLKKSCLLVDGNTSERFS-MHDVVRDAA 444 (871)
Q Consensus 389 li~~w~-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~Hdlv~d~a 444 (871)
+....- ..|. + .+ .....++++.|++.+++...+ +.|+ -|++++++.
T Consensus 308 l~~~~~~~~g~--~-~~----~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 308 VKRALELEEGI--E-IS----DSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHCS--C-CC----HHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred HHHHHHHhcCC--C-CC----HHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 322110 0110 0 01 123556889999999997653 4576 488998864
No 107
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=8.2e-13 Score=143.69 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=91.4
Q ss_pred eeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCC-CC-CccccccCCcE-EEecccC
Q 038510 478 AISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLP-LP-SSLGLLQNLQT-LCLNYCN 554 (871)
Q Consensus 478 ~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp-~~i~~l~~Lr~-L~L~~~~ 554 (871)
.+..+++++.++|... .++++.|.+++|.+..+|...|.++++|++|+|++|.+.. +| ..+.++++|+. +.+.+|+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4445556666666544 3567777777777777777667777777777777777643 44 34566666554 4445566
Q ss_pred CCC--CcccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCC-CCcEEecccCCC
Q 038510 555 LGD--IAIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLS-RLEELYIGESPI 625 (871)
Q Consensus 555 i~~--~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~-~L~~L~l~~~~~ 625 (871)
+.. +..+..+++|++|++++|.+..+|. .+....++.+|++.++..+..+|...+..+. .|+.|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 665 3456677777777777777776664 2345556666766665566666655444443 466666666554
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=7.8e-13 Score=137.36 Aligned_cols=148 Identities=23% Similarity=0.271 Sum_probs=131.9
Q ss_pred ccccccceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEe
Q 038510 471 EKLKVCTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCL 550 (871)
Q Consensus 471 ~~~~~~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L 550 (871)
....+++.+++++|.+..++....+++|+.|.+++|....++. +.+++.|++|++++|.++.+|.... .+|++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 3456899999999999999876789999999999998888877 8899999999999999998886444 99999999
Q ss_pred cccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 551 NYCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 551 ~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
++|.++.++.++.+++|++|++++|.++.+| .+..+++|++|++++| .+..++ . +..+++|+.|++.+|.+.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~-~-l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTG-G-LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCT-T-STTCCCCCEEEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchH-H-hccCCCCCEEeCCCCccc
Confidence 9999999888999999999999999999997 6899999999999998 566663 2 889999999999998764
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.42 E-value=8.9e-14 Score=150.62 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=87.3
Q ss_pred CCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCC--CCCccccccCCcEEEecccCCCC--CcccCCCCCccEEE
Q 038510 496 PQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLP--LPSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILS 571 (871)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~--lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~ 571 (871)
++++.|.+.++.....+.. +..+++|++|++++|.+.. +|..+..+++|++|++++|.+.. +..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444333333332 2345666666666665542 45555566666666666666543 34555666666666
Q ss_pred eeCC-Ccc--ccchhhcCCCCCCEEeCCCCCCCCc--cChhhhhCCC-CCcEEecccCCCCccccccccchhcccchhhh
Q 038510 572 LRGS-DVE--KLVGEMGQLTQLRLLDLSKCFELKV--IPPNVISSLS-RLEELYIGESPIQWGTVEGLDSERRNASLHEL 645 (871)
Q Consensus 572 l~~~-~i~--~lp~~i~~L~~L~~L~l~~~~~l~~--~p~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L 645 (871)
+++| .++ .+|..+.++++|++|++++|..++. ++.. +..++ +|++|++++|..... .......+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~---------~~~l~~~~ 218 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQ---------KSDLSTLV 218 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSC---------HHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCC---------HHHHHHHH
Confidence 6666 455 2555556666666666666533332 2222 45566 666666665521000 01112234
Q ss_pred ccCCCCCeEEEeecc-C-CCCCcchhhhccceeEEEE
Q 038510 646 NHLSKLTSLEILIQD-E-KTIPSDLLFFKILKRYRIF 680 (871)
Q Consensus 646 ~~L~~L~~L~i~~~~-~-~~~~~~l~~l~~L~~L~l~ 680 (871)
.++++|+.|++..+. . ...+..+..+++|+.|++.
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 255 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLS 255 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCC
Confidence 455666666665544 2 1223334444555555443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=9.6e-13 Score=143.75 Aligned_cols=147 Identities=20% Similarity=0.287 Sum_probs=79.8
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCccccc-CCCcceEEEecCCCCCCCC-CccccccCCcEEEecccC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFT-GMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCN 554 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~ 554 (871)
+.++.+++.+..+|... .+.++.|++++|.+..++...|. ++.+|++|+|++|.++.++ ..+..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 34555555555555432 23455566666555555555554 5566666666666665444 345556666666666666
Q ss_pred CCC-C-cccCCCCCccEEEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhh---hCCCCCcEEecccCCC
Q 038510 555 LGD-I-AIIGDLKKLEILSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVI---SSLSRLEELYIGESPI 625 (871)
Q Consensus 555 i~~-~-~~i~~l~~L~~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i---~~L~~L~~L~l~~~~~ 625 (871)
++. + ..+..+.+|++|++++|.+..++ ..+..+++|++|++++| .+..+|...+ ..+++|++|++++|.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 554 2 23555666666666666555552 34555666666666654 4555555433 3455666666655554
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=5.5e-14 Score=155.41 Aligned_cols=236 Identities=17% Similarity=0.150 Sum_probs=136.4
Q ss_pred CCCCceEEEecCCCCCccCc----ccccCCCcceEEEecCCCCCC----CCCcc-------ccccCCcEEEecccCCCC-
Q 038510 494 ECPQLKYFRIGNDPSLRIPD----NFFTGMTGLKVLDFTEMHLLP----LPSSL-------GLLQNLQTLCLNYCNLGD- 557 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~----~~~~~l~~Lr~L~l~~~~i~~----lp~~i-------~~l~~Lr~L~L~~~~i~~- 557 (871)
.+++|+.|.++++.+..... ..+..+++|++|++++|.+.. +|..+ ..+++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 46677777777765443211 225567788888888765543 33333 567788888888887755
Q ss_pred -----CcccCCCCCccEEEeeCCCcc-----ccchhhcCC---------CCCCEEeCCCCCCC-CccCh--hhhhCCCCC
Q 038510 558 -----IAIIGDLKKLEILSLRGSDVE-----KLVGEMGQL---------TQLRLLDLSKCFEL-KVIPP--NVISSLSRL 615 (871)
Q Consensus 558 -----~~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L---------~~L~~L~l~~~~~l-~~~p~--~~i~~L~~L 615 (871)
+..+.++++|++|++++|.+. .++..+..+ ++|++|++++|... ..+|. ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 235677788888888888765 233334444 78888888876322 22331 225677788
Q ss_pred cEEecccCCCCccccccccchhcccchh-hhccCCCCCeEEEeeccC-----CCCCcchhhhccceeEEEEeeecccCCC
Q 038510 616 EELYIGESPIQWGTVEGLDSERRNASLH-ELNHLSKLTSLEILIQDE-----KTIPSDLLFFKILKRYRIFIGYLWSDDP 689 (871)
Q Consensus 616 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L~~L~i~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 689 (871)
++|++++|.+.... ....+. .+.++++|+.|+++.+.+ ..+|..+..+++|+.|.+..+....
T Consensus 190 ~~L~L~~n~l~~~g--------~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~--- 258 (386)
T 2ca6_A 190 HTVKMVQNGIRPEG--------IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA--- 258 (386)
T ss_dssp CEEECCSSCCCHHH--------HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH---
T ss_pred CEEECcCCCCCHhH--------HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch---
Confidence 88888777653110 001222 566777888888776655 3344444555556655553221000
Q ss_pred CCCCccceeEEEeccCCcccchhhHH-hhhcccceEEeeccCCcee----ccccCCCCCCCCccEEEeecCC
Q 038510 690 ILDGFSRKFKLKITNGANICLNEGHI-MQLKGIEDLSLHGLLDMKN----VLCEPGREGFPQLKHLEVRDNR 756 (871)
Q Consensus 690 ~~~~~~~l~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~ 756 (871)
.....++.++. ..+++|++|+|++|..... ++... ...+++|++|++++|+
T Consensus 259 ---------------~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 259 ---------------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNR 314 (386)
T ss_dssp ---------------HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred ---------------hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence 00001222221 1257889999988764431 32211 1457999999999874
No 112
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.39 E-value=6.7e-12 Score=136.57 Aligned_cols=267 Identities=13% Similarity=0.116 Sum_probs=155.2
Q ss_pred cCCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--cc-------c-----------
Q 038510 147 TQDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--KS-------H----------- 206 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~-------~----------- 206 (871)
......|+||+++++++.+++..+ +++.|+|++|+|||||++++++....- .++ .. +
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 84 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERPGI-LIDCRELYAERGHITREELIKELQST 84 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSSEE-EEEHHHHHHTTTCBCHHHHHHHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcCcE-EEEeecccccccCCCHHHHHHHHHHH
Confidence 344567999999999999988754 799999999999999999998763100 000 00 0
Q ss_pred ------------------------hhhHHHHHHHHH----HcCCcEEEEEecCCCccC---------hhhhccccCCCCC
Q 038510 207 ------------------------ETVRAGRLLERL----KKEKKILIILDDIWGGLD---------LEAIGIPLADDNS 249 (871)
Q Consensus 207 ------------------------~~~~~~~l~~~l----~~~kr~LlvlDdv~~~~~---------~~~l~~~l~~~~~ 249 (871)
.......+.+.+ ...++++|||||++.... +..+.. +.+...
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~-~~~~~~ 163 (350)
T 2qen_A 85 ISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY-AYDSLP 163 (350)
T ss_dssp SCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH-HHHHCT
T ss_pred HHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH-HHHhcC
Confidence 001122222222 222389999999976543 122221 111224
Q ss_pred CcEEEEeecCcchh-c---------ccc-CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHH
Q 038510 250 GCKVLLTARSQDVL-S---------CKM-DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAI 318 (871)
Q Consensus 250 gs~iivTtr~~~va-~---------~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 318 (871)
+.++|+|++...+. . ... .....+.+.+|+.+|+.+++.......... --.+.+..|++.|+|+|+++
T Consensus 164 ~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHTTCHHHH
T ss_pred CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHH
Confidence 67899998875321 1 011 123479999999999999998764321111 11356789999999999999
Q ss_pred HHHHHHHhc-CChhHHHH-HHHHhcCCCCCCccchhhhhheecccccccC---ChhhHHHHHHhhcccccchhhhHHHHh
Q 038510 319 VPVARALIN-KRLFEWKD-SLLELRRPSFRNISGTLEVAYKSIELSYNHL---NREELKRTFLLIGYAFISCVKDVLYHG 393 (871)
Q Consensus 319 ~~~~~~l~~-~~~~~w~~-~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~lk~cfl~~s~fp~~~~~~li~~w 393 (871)
..++..+.. .+...+.. +.+. +...+.-.+..+ ++. .+..+..+|.-+ .....+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~~-~~~~l~~la~g~-~~~~~l~~~~ 305 (350)
T 2qen_A 243 VVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSPR-YVDILRAIALGY-NRWSLIRDYL 305 (350)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCHH-HHHHHHHHHTTC-CSHHHHHHHH
T ss_pred HHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCChh-HHHHHHHHHhCC-CCHHHHHHHH
Confidence 999876542 33322211 1111 000011111122 555 688888777622 2233333322
Q ss_pred h-cccccccccchHHHHHHHHHHHHHHHHhcccccCCCccceeh-hHHHHHHHH
Q 038510 394 M-GLGLFQNINTSEEAWDRAHTLVDKLKKSCLLVDGNTSERFSM-HDVVRDAAI 445 (871)
Q Consensus 394 ~-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~-Hdlv~d~a~ 445 (871)
- +.| + .+ .....++++.|.+.+++...+ +.|.+ |++++++.+
T Consensus 306 ~~~~~---~-~~----~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 306 AVKGT---K-IP----EPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHTTC---C-CC----HHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHhC---C-CC----HHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 1 111 0 01 123457889999999996542 45654 888888764
No 113
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.39 E-value=7.2e-13 Score=141.55 Aligned_cols=191 Identities=18% Similarity=0.107 Sum_probs=142.5
Q ss_pred cccceeecccCCcCc-CCCC---CCCCCceEEEecCCCCCccC----cccccCCCcceEEEecCCCCCCCC-CccccccC
Q 038510 474 KVCTAISLIYSNISE-LPQG---FECPQLKYFRIGNDPSLRIP----DNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQN 544 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~ 544 (871)
.+++++++++|.+.. .+.. ..+++|++|++++|...... ...+..++.|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 358888998888764 3333 56889999999987765421 223457889999999999998665 67889999
Q ss_pred CcEEEecccCCCC---C---cccCCCCCccEEEeeCCCccccchh----hcCCCCCCEEeCCCCCCCCccChhhhhCC--
Q 038510 545 LQTLCLNYCNLGD---I---AIIGDLKKLEILSLRGSDVEKLVGE----MGQLTQLRLLDLSKCFELKVIPPNVISSL-- 612 (871)
Q Consensus 545 Lr~L~L~~~~i~~---~---~~i~~l~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~~~l~~~p~~~i~~L-- 612 (871)
|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|......|.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccC
Confidence 9999999998643 1 2347899999999999999877753 578899999999998443333655 5666
Q ss_pred -CCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEEe
Q 038510 613 -SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIFI 681 (871)
Q Consensus 613 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~ 681 (871)
++|++|++++|.+...+ . .+. ++|+.|+++.+.+..+|. +..+++|+.|.+..
T Consensus 250 ~~~L~~L~Ls~N~l~~lp-~------------~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVP-K------------GLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp CTTCCCEECCSSCCCSCC-S------------CCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSS
T ss_pred cCcCCEEECCCCCCCchh-h------------hhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcC
Confidence 69999999998875221 1 122 689999999988887755 45667788777643
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.9e-12 Score=141.45 Aligned_cols=153 Identities=24% Similarity=0.335 Sum_probs=108.9
Q ss_pred cccccceeecccCCcCcCCCCC---CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcE
Q 038510 472 KLKVCTAISLIYSNISELPQGF---ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQT 547 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~ 547 (871)
.+..++.|++++|.+..++... .+++|+.|++++|.+..++...|.+++.|++|+|++|.++.+|. .+..+.+|++
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 3455777777777777665432 67777888887777777776667777788888888877776654 4677778888
Q ss_pred EEecccCCCC--CcccCCCCCccEEEeeCCCccccchhh----cCCCCCCEEeCCCCCCCCccChhhhhCCCC--CcEEe
Q 038510 548 LCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLVGEM----GQLTQLRLLDLSKCFELKVIPPNVISSLSR--LEELY 619 (871)
Q Consensus 548 L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp~~i----~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~--L~~L~ 619 (871)
|+|++|.+.. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++| .+..+|...+..+++ |+.|+
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEE
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEE
Confidence 8888877765 356777778888888888777777654 56777888888776 666777666666766 36777
Q ss_pred cccCCC
Q 038510 620 IGESPI 625 (871)
Q Consensus 620 l~~~~~ 625 (871)
+.+|.+
T Consensus 196 l~~N~~ 201 (361)
T 2xot_A 196 LHNNPL 201 (361)
T ss_dssp CCSSCE
T ss_pred ecCCCc
Confidence 777665
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=1.1e-13 Score=153.06 Aligned_cols=241 Identities=14% Similarity=0.108 Sum_probs=156.1
Q ss_pred ccCCCcceEEEecCCCCCC-----CCCccccccCCcEEEecccCCCC-----Ccc-------cCCCCCccEEEeeCCCcc
Q 038510 516 FTGMTGLKVLDFTEMHLLP-----LPSSLGLLQNLQTLCLNYCNLGD-----IAI-------IGDLKKLEILSLRGSDVE 578 (871)
Q Consensus 516 ~~~l~~Lr~L~l~~~~i~~-----lp~~i~~l~~Lr~L~L~~~~i~~-----~~~-------i~~l~~L~~L~l~~~~i~ 578 (871)
+..++.|++|++++|.+.. ++..+..+++|++|+|++|.+.. |.. +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 6678899999999998873 44557789999999999986543 222 378999999999999888
Q ss_pred c-----cchhhcCCCCCCEEeCCCCCCCCccChhh----hhCC---------CCCcEEecccCCCCccccccccchhccc
Q 038510 579 K-----LVGEMGQLTQLRLLDLSKCFELKVIPPNV----ISSL---------SRLEELYIGESPIQWGTVEGLDSERRNA 640 (871)
Q Consensus 579 ~-----lp~~i~~L~~L~~L~l~~~~~l~~~p~~~----i~~L---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 640 (871)
. +|..+.++++|++|++++| .++..+... +..+ ++|++|++++|.+....+ ..
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~--------~~ 178 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM--------KE 178 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGH--------HH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHH--------HH
Confidence 6 7888999999999999998 444322222 3334 899999999987642211 11
Q ss_pred chhhhccCCCCCeEEEeeccCC------CCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhH
Q 038510 641 SLHELNHLSKLTSLEILIQDEK------TIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGH 714 (871)
Q Consensus 641 ~l~~L~~L~~L~~L~i~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 714 (871)
....+..+++|+.|++..+.+. ..+..+..+++|+.|.+..+... ......+|.++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~------------------~~g~~~l~~~l 240 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT------------------HLGSSALAIAL 240 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH------------------HHHHHHHHHHG
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC------------------cHHHHHHHHHH
Confidence 2245778889999999877654 12224445566666665432100 00001233332
Q ss_pred HhhhcccceEEeeccCCcee----ccccCCCCCCCCccEEEeecCCCceeEeecCcccccC-CcCCccceeeccccc
Q 038510 715 IMQLKGIEDLSLHGLLDMKN----VLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATAL-TAFPLLESLFLEDLG 786 (871)
Q Consensus 715 ~~~l~~L~~L~L~~~~~~~~----~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~-~~fp~L~~L~l~~~~ 786 (871)
..+++|++|+|++|..... ++..+..+.+++|++|+|++|. +... +........ ..+|+|+.|.+++++
T Consensus 241 -~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~-g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 241 -KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELD-AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp -GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHH-HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred -ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHH-HHHHHHHHHHhcCCCceEEEccCCc
Confidence 3458999999998764332 1111111448999999999974 3320 000001111 347999999999853
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=2e-12 Score=124.49 Aligned_cols=104 Identities=22% Similarity=0.192 Sum_probs=50.3
Q ss_pred CcceEEEecCCCCC--CCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeCCCccc-cchhhcCCCCCCEEeCC
Q 038510 520 TGLKVLDFTEMHLL--PLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGSDVEK-LVGEMGQLTQLRLLDLS 596 (871)
Q Consensus 520 ~~Lr~L~l~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~-lp~~i~~L~~L~~L~l~ 596 (871)
+.|++|++++|.++ .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.+.. +|..+.++++|++|+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 34555555555544 4444445555555555555554444444555555555555555544 44444445555555555
Q ss_pred CCCCCCccCh-hhhhCCCCCcEEecccCC
Q 038510 597 KCFELKVIPP-NVISSLSRLEELYIGESP 624 (871)
Q Consensus 597 ~~~~l~~~p~-~~i~~L~~L~~L~l~~~~ 624 (871)
+| .++.+|. ..++.+++|++|++.+|.
T Consensus 104 ~N-~l~~~~~~~~l~~l~~L~~L~l~~N~ 131 (168)
T 2ell_A 104 GN-KLKDISTLEPLKKLECLKSLDLFNCE 131 (168)
T ss_dssp SS-SCCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred CC-ccCcchhHHHHhcCCCCCEEEeeCCc
Confidence 54 3333331 224445555555555444
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=4e-12 Score=128.20 Aligned_cols=146 Identities=15% Similarity=0.236 Sum_probs=108.1
Q ss_pred eEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCC
Q 038510 499 KYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGS 575 (871)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~ 575 (871)
+.+.+.++....+|..+. ..|+.|++++|.++.+|. .+..+++|++|+|++|.++. +..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 456777777777776542 678888888888886664 67888888888888888876 467888888888888888
Q ss_pred Cccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeE
Q 038510 576 DVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSL 654 (871)
Q Consensus 576 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L 654 (871)
.++.+|.. +..+++|++|++++| .+..+++..+..+++|++|++++|.+.... ...+..+++|+.|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~L 157 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA------------KGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC------------TTTTTTCTTCCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC------------HHHHhCCCCCCEE
Confidence 88888865 577888888888887 566666666788888888888887764222 1235566677777
Q ss_pred EEeecc
Q 038510 655 EILIQD 660 (871)
Q Consensus 655 ~i~~~~ 660 (871)
++..+.
T Consensus 158 ~L~~N~ 163 (220)
T 2v9t_B 158 HLAQNP 163 (220)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 776543
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.36 E-value=7.3e-12 Score=127.15 Aligned_cols=149 Identities=20% Similarity=0.288 Sum_probs=122.1
Q ss_pred ceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCCCCC--cccCCCCCccEEEeeC
Q 038510 498 LKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNLGDI--AIIGDLKKLEILSLRG 574 (871)
Q Consensus 498 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~~--~~i~~l~~L~~L~l~~ 574 (871)
.+++++.++....+|..+ ...|++|++++|.++.+ |..+..+++|++|+|++|.++.+ ..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356777777788888764 37899999999999976 67789999999999999999873 4478999999999999
Q ss_pred CCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 575 SDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 575 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+.... ...+..+++|+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~ 163 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIP------------HGAFDRLSSLTH 163 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCC------------TTTTTTCTTCCE
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccC------------HHHHhCCCCCCE
Confidence 999999865 688999999999997 67789887 799999999999998764221 134677888999
Q ss_pred EEEeeccCCC
Q 038510 654 LEILIQDEKT 663 (871)
Q Consensus 654 L~i~~~~~~~ 663 (871)
|++..+....
T Consensus 164 L~l~~N~~~c 173 (229)
T 3e6j_A 164 AYLFGNPWDC 173 (229)
T ss_dssp EECTTSCBCT
T ss_pred EEeeCCCccC
Confidence 9888766543
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=3.3e-12 Score=127.70 Aligned_cols=147 Identities=21% Similarity=0.266 Sum_probs=126.5
Q ss_pred cccccceeecccCCcCcCCCC--CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEE
Q 038510 472 KLKVCTAISLIYSNISELPQG--FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTL 548 (871)
Q Consensus 472 ~~~~~~~lsl~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L 548 (871)
.+.+++++++++|.+..++.. ..+++|+.|++.++....++...|.++++|++|++++|.++.+|.. +..+++|++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 356899999999999888764 3799999999999998899988899999999999999999988764 6899999999
Q ss_pred EecccCCCC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 549 CLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 549 ~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
++++|.++. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|.. .+.+++|+.|+++.+.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKH 177 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHHHC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHHhC
Confidence 999999987 3 3478999999999999999999875 78899999999999832 34567788888776654
Q ss_pred C
Q 038510 626 Q 626 (871)
Q Consensus 626 ~ 626 (871)
.
T Consensus 178 ~ 178 (208)
T 2o6s_A 178 S 178 (208)
T ss_dssp T
T ss_pred C
Confidence 3
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.34 E-value=6.5e-12 Score=143.96 Aligned_cols=139 Identities=20% Similarity=0.300 Sum_probs=111.4
Q ss_pred CCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeCC
Q 038510 496 PQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGS 575 (871)
Q Consensus 496 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~ 575 (871)
.+++.|++.++....+|..++ ++|++|++++|.++.+| +.+++|++|++++|.++.++.+++ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence 378899999888878887653 67999999999999888 457899999999999887444555 8999999999
Q ss_pred CccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEE
Q 038510 576 DVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLE 655 (871)
Q Consensus 576 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~ 655 (871)
.++.+|. .+++|++|++++| .++.+|. .+++|++|++++|.+...+ .+. ++|+.|+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~lp--------------~l~--~~L~~L~ 186 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTFLP--------------ELP--ESLEALD 186 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCC--------------CCC--TTCCEEE
T ss_pred cCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCCcc--------------hhh--CCCCEEE
Confidence 9999887 7899999999987 5667776 4788999999988764311 122 7888899
Q ss_pred EeeccCCCCCc
Q 038510 656 ILIQDEKTIPS 666 (871)
Q Consensus 656 i~~~~~~~~~~ 666 (871)
++.+.+..+|.
T Consensus 187 Ls~N~L~~lp~ 197 (571)
T 3cvr_A 187 VSTNLLESLPA 197 (571)
T ss_dssp CCSSCCSSCCC
T ss_pred CcCCCCCchhh
Confidence 88888777776
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=3.3e-12 Score=122.94 Aligned_cols=129 Identities=22% Similarity=0.283 Sum_probs=100.6
Q ss_pred CCCceEEEecCCCCC--ccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-Cc-ccCCCCCccEE
Q 038510 495 CPQLKYFRIGNDPSL--RIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-IA-IIGDLKKLEIL 570 (871)
Q Consensus 495 ~~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~-~i~~l~~L~~L 570 (871)
.++|+.|.+.++... .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. ++ .++++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777777776655 55554 67788899999998888877 778888899999999998876 44 45568899999
Q ss_pred EeeCCCccccc--hhhcCCCCCCEEeCCCCCCCCccCh---hhhhCCCCCcEEecccCCCC
Q 038510 571 SLRGSDVEKLV--GEMGQLTQLRLLDLSKCFELKVIPP---NVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 571 ~l~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l~~~~~~ 626 (871)
++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.+|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999888876 67888899999999887 5666666 45788888998888877653
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=8.6e-12 Score=125.71 Aligned_cols=146 Identities=15% Similarity=0.189 Sum_probs=109.6
Q ss_pred eEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC--CccccccCCcEEEecccCCCC-C-cccCCCCCccEEEeeC
Q 038510 499 KYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP--SSLGLLQNLQTLCLNYCNLGD-I-AIIGDLKKLEILSLRG 574 (871)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp--~~i~~l~~Lr~L~L~~~~i~~-~-~~i~~l~~L~~L~l~~ 574 (871)
++++++++....+|..+ ...+++|++++|.++.++ ..+..+++|++|++++|.++. + ..++++.+|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47788887777787754 345678899998888663 347888899999999888877 2 4688888899999998
Q ss_pred CCccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 575 SDVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 575 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
|.++.+|.. +..+++|++|++++| .+..+++..+..+++|++|++++|.+.... ...+..+++|+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------~~~~~~l~~L~~ 157 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVA------------PGAFDTLHSLST 157 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBC------------TTTTTTCTTCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEEC------------HHHhcCCCCCCE
Confidence 888888754 788889999998887 566665555788888888888888764321 234566777777
Q ss_pred EEEeecc
Q 038510 654 LEILIQD 660 (871)
Q Consensus 654 L~i~~~~ 660 (871)
|++..+.
T Consensus 158 L~L~~N~ 164 (220)
T 2v70_A 158 LNLLANP 164 (220)
T ss_dssp EECCSCC
T ss_pred EEecCcC
Confidence 7776554
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=8.9e-13 Score=144.18 Aligned_cols=242 Identities=11% Similarity=0.066 Sum_probs=109.4
Q ss_pred ccCCCcceEEEecCCCCCCCC-----Ccccccc-CCcEEEecccCCCC--CcccCCC-----CCccEEEeeCCCccccch
Q 038510 516 FTGMTGLKVLDFTEMHLLPLP-----SSLGLLQ-NLQTLCLNYCNLGD--IAIIGDL-----KKLEILSLRGSDVEKLVG 582 (871)
Q Consensus 516 ~~~l~~Lr~L~l~~~~i~~lp-----~~i~~l~-~Lr~L~L~~~~i~~--~~~i~~l-----~~L~~L~l~~~~i~~lp~ 582 (871)
+...+.|++|++++|.++..+ ..+..++ +|++|+|++|.++. +..+..+ ++|++|++++|.++..+.
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence 344444666666666655443 3444555 56666666666544 2333332 566666666666554332
Q ss_pred h-----hcCC-CCCCEEeCCCCCCCCccChhhhh----C-CCCCcEEecccCCCCccccccccchhcccchhhhccCC-C
Q 038510 583 E-----MGQL-TQLRLLDLSKCFELKVIPPNVIS----S-LSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS-K 650 (871)
Q Consensus 583 ~-----i~~L-~~L~~L~l~~~~~l~~~p~~~i~----~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~-~ 650 (871)
. +..+ ++|++|++++| .++..+...+. . .++|++|++++|.+....+ ......+..++ +
T Consensus 98 ~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--------~~l~~~l~~~~~~ 168 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS--------DELIQILAAIPAN 168 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH--------HHHHHHHHTSCTT
T ss_pred HHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH--------HHHHHHHhcCCcc
Confidence 1 3333 56666666665 34444433222 2 2466666666655432110 01122333443 5
Q ss_pred CCeEEEeeccCCCCCc-ch----hhh-ccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceE
Q 038510 651 LTSLEILIQDEKTIPS-DL----LFF-KILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDL 724 (871)
Q Consensus 651 L~~L~i~~~~~~~~~~-~l----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L 724 (871)
|+.|+++.+....... .+ ..+ ++|+.|++..+.... .....++..+....++|++|
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~------------------~~~~~l~~~l~~~~~~L~~L 230 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL------------------KSYAELAYIFSSIPNHVVSL 230 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG------------------SCHHHHHHHHHHSCTTCCEE
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh------------------hHHHHHHHHHhcCCCCceEE
Confidence 6666666554433221 11 112 244444442221000 00001233333333577777
Q ss_pred EeeccCCceeccc--cCCCCCCCCccEEEeecCCCceeEeec--CcccccCCcCCccceeecccc
Q 038510 725 SLHGLLDMKNVLC--EPGREGFPQLKHLEVRDNRSLFCVVDT--VDCATALTAFPLLESLFLEDL 785 (871)
Q Consensus 725 ~L~~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~~~~~~--~~~~~~~~~fp~L~~L~l~~~ 785 (871)
+++++........ ......+++|+.|++++|. +..+... .........+++|+.|+++++
T Consensus 231 ~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp ECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred ECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 7776643221110 0112567788888888763 1111000 001112334566677777663
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.3e-12 Score=125.02 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=65.4
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-Ccc-cCCCCCccEEE
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-IAI-IGDLKKLEILS 571 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~~-i~~l~~L~~L~ 571 (871)
.+++|+.|.+.++....++. +....+.|++|++++|.++.+ ..++.+++|++|++++|.++. ++. ++.+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 44555555555554444432 222222555555555555544 345555555555555555554 222 25555555555
Q ss_pred eeCCCccccch--hhcCCCCCCEEeCCCCCCCCccChh---hhhCCCCCcEEecccC
Q 038510 572 LRGSDVEKLVG--EMGQLTQLRLLDLSKCFELKVIPPN---VISSLSRLEELYIGES 623 (871)
Q Consensus 572 l~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~l~~~ 623 (871)
+++|.+..+|. .+..+++|++|++++| .+..+|.. .++.+++|+.|++.+|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 55555555554 4555555555555554 33444432 3455555555555444
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=3.2e-12 Score=120.24 Aligned_cols=103 Identities=24% Similarity=0.345 Sum_probs=48.1
Q ss_pred ccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-C-cccCCCCCccEEEeeCCCccccc--hhhcCCCCCC
Q 038510 516 FTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLV--GEMGQLTQLR 591 (871)
Q Consensus 516 ~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp--~~i~~L~~L~ 591 (871)
+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. + ..++.+++|++|++++|.++.+| ..++.+++|+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 34444555555555554444 344445555555555555443 2 22333555555555555554443 3444555555
Q ss_pred EEeCCCCCCCCccCh---hhhhCCCCCcEEec
Q 038510 592 LLDLSKCFELKVIPP---NVISSLSRLEELYI 620 (871)
Q Consensus 592 ~L~l~~~~~l~~~p~---~~i~~L~~L~~L~l 620 (871)
+|++++| .+..+|. ..++.+++|+.|++
T Consensus 117 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 117 SLDLFNC-EVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EEECTTC-GGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EEeCcCC-cccchHHHHHHHHHHCCCcccccC
Confidence 5555544 3333333 23444555555443
No 126
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=3.3e-11 Score=134.26 Aligned_cols=258 Identities=14% Similarity=0.083 Sum_probs=148.2
Q ss_pred cccccchHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHhHHHHHHHHHHhhcc-----ccc----c----cc--
Q 038510 151 MHFESRKSTFKEILDAL-S----N--RDFNMIGV--YGMGGIGKTTLVKEVGRQAKENN-----LFE----K----SH-- 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~-----~F~----~----~~-- 206 (871)
..++||+++++++.+++ . . ...+.+.| +|++|+||||||+.+++...... .|. . ..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56899999999999888 3 2 24566777 99999999999999998765421 111 0 00
Q ss_pred --------------------hhhHHHHHHHHHH-cCCcEEEEEecCCCccC--------hhhhccccCC-C--C--CCcE
Q 038510 207 --------------------ETVRAGRLLERLK-KEKKILIILDDIWGGLD--------LEAIGIPLAD-D--N--SGCK 252 (871)
Q Consensus 207 --------------------~~~~~~~l~~~l~-~~kr~LlvlDdv~~~~~--------~~~l~~~l~~-~--~--~gs~ 252 (871)
.......+.+.+. .+++++|||||+|.... +..+...+.. . + ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 0111233444443 25789999999976432 2222222211 1 2 3345
Q ss_pred EEEeecCcchhcc--------ccCCcceeeccCCCHHHHHHHHHHHhC---CCCCCchhHHHHHHHHHHcC------Cch
Q 038510 253 VLLTARSQDVLSC--------KMDCQQNFFVDVLNEKEAWSLFRKMTG---DCIENGELKSVATEIVKECA------GLP 315 (871)
Q Consensus 253 iivTtr~~~va~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~l~~~~~~I~~~c~------GlP 315 (871)
||+||+...+... .......+.+++++.++.+++|...+. ... .--.+..+.|++.|+ |.|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcH
Confidence 8888876543210 011122399999999999999976542 211 112457888999999 999
Q ss_pred hHHHHHHHHH-h-----cC---ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHHHHHhhcccc----
Q 038510 316 IAIVPVARAL-I-----NK---RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKRTFLLIGYAF---- 382 (871)
Q Consensus 316 Lai~~~~~~l-~-----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp---- 382 (871)
..+..+.... . +. +.+.+..++..... ...+.-++..||++ .+.++..++.+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCC
Confidence 7665554322 1 11 23444444333110 23455678899998 788888888642
Q ss_pred -cchhhhHHHHhhcc--cccccccchHHHHHHHHHHHHHHHHhccccc
Q 038510 383 -ISCVKDVLYHGMGL--GLFQNINTSEEAWDRAHTLVDKLKKSCLLVD 427 (871)
Q Consensus 383 -~~~~~~li~~w~ae--g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 427 (871)
.+...++...|... ... +.... ....+..++++|.+.+++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMY-NVKPR--GYTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHS-CCCCC--CHHHHHHHHHHHHHTTSEEE
T ss_pred CCccHHHHHHHHHHHHHhhc-CCCCC--CHHHHHHHHHHHHhCCCEEe
Confidence 34444444333210 000 00000 11235567899999999954
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.4e-11 Score=121.31 Aligned_cols=123 Identities=21% Similarity=0.319 Sum_probs=95.6
Q ss_pred EEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCC--cccCCCCCccEEEeeCCCc
Q 038510 500 YFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDI--AIIGDLKKLEILSLRGSDV 577 (871)
Q Consensus 500 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~--~~i~~l~~L~~L~l~~~~i 577 (871)
++++.++....+|..++ ..|++|++++|.++.+|..+..+.+|++|+|++|.++.+ ..+.++++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34445555555555432 468888888888888888888888888888888888773 4588888889999988888
Q ss_pred cccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 578 EKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 578 ~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
+.+|. .+..+++|++|++++| .+..+|.+.+..+++|+.|++.+|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 88875 5788889999998887 677788776788888899988887653
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=4e-12 Score=151.31 Aligned_cols=151 Identities=20% Similarity=0.281 Sum_probs=96.3
Q ss_pred cccceeecccCCcCcCCCCC-CCCCceEEEecC-----CCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcE
Q 038510 474 KVCTAISLIYSNISELPQGF-ECPQLKYFRIGN-----DPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQT 547 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l~~~~-~~~~L~~L~l~~-----~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~ 547 (871)
..++++++..+.+...+... ...+|+.+.+.. +.. .++...|..+..|++|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 45778888777776554322 334444444332 222 25566688889999999999999999988889999999
Q ss_pred EEecccCCCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 548 LCLNYCNLGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 548 L~L~~~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
|+|++|.++. |..+++|.+|++|+|++|.++.+|..+++|++|++|++++| .++.+|.. +++|++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 9999999887 67789999999999999999999988999999999999987 67788887 899999999999998875
Q ss_pred c
Q 038510 627 W 627 (871)
Q Consensus 627 ~ 627 (871)
.
T Consensus 330 ~ 330 (727)
T 4b8c_D 330 K 330 (727)
T ss_dssp S
T ss_pred C
Confidence 4
No 129
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.29 E-value=3.9e-12 Score=111.99 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=62.4
Q ss_pred hccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 038510 18 PIIHPFTYCC-TYKTNFEKLNNEVDKLKNARDSMQCKVDDSRIKG-DGIQQHVEEWLFAANKEINEVETIIEDKENSN 93 (871)
Q Consensus 18 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~wl~~l~~~~~d~ed~ld~~~~~~ 93 (871)
++..+++.++ +.+..+.++++++++|+++|+.|+++|.+|+++. ...+++++.|+++||+++||+||++|+|.+..
T Consensus 5 ~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 5 NLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444443333 4556789999999999999999999999999873 24589999999999999999999999997653
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.9e-11 Score=120.36 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=72.6
Q ss_pred EEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc--cccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCC
Q 038510 500 YFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS--LGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGS 575 (871)
Q Consensus 500 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~--i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~ 575 (871)
+++++++....+|..++ ..|++|++++|.+..++.. ++.+++|++|+|++|.++. +..++++++|++|++++|
T Consensus 12 ~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 33444444444444322 2566666666666655542 6666666666666666655 345666666777777777
Q ss_pred Cccccchh-hcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 576 DVEKLVGE-MGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 576 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
.++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++.+|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66666543 566677777777665 44444444466667777777766654
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=1.3e-11 Score=116.15 Aligned_cols=122 Identities=22% Similarity=0.165 Sum_probs=108.9
Q ss_pred ccccceeecccCCcC--cCCCC-CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCC-CCCccccccCCcEE
Q 038510 473 LKVCTAISLIYSNIS--ELPQG-FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLP-LPSSLGLLQNLQTL 548 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~l~~Lr~L 548 (871)
+.+++++++++|.+. .+|.. ..+++|+.|.+.+|....+ ..+..+++|++|++++|.++. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467999999999997 77765 4899999999999888777 458899999999999999997 78778889999999
Q ss_pred EecccCCCC-C--cccCCCCCccEEEeeCCCccccch----hhcCCCCCCEEeCC
Q 038510 549 CLNYCNLGD-I--AIIGDLKKLEILSLRGSDVEKLVG----EMGQLTQLRLLDLS 596 (871)
Q Consensus 549 ~L~~~~i~~-~--~~i~~l~~L~~L~l~~~~i~~lp~----~i~~L~~L~~L~l~ 596 (871)
++++|.++. + ..++.+++|++|++++|.++.+|. .++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999988 3 789999999999999999998886 68899999999875
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=4.1e-12 Score=138.90 Aligned_cols=202 Identities=12% Similarity=0.147 Sum_probs=127.1
Q ss_pred ccccceeecccCCcCcCCC-----C-CCCC-CceEEEecCCCCCccCcccccCC-----CcceEEEecCCCCCCCC-Cc-
Q 038510 473 LKVCTAISLIYSNISELPQ-----G-FECP-QLKYFRIGNDPSLRIPDNFFTGM-----TGLKVLDFTEMHLLPLP-SS- 538 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~-----~-~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~i~~lp-~~- 538 (871)
..+++++++++|.+...+. . ..++ +|+.|++++|.........+..+ +.|++|++++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3457888888888776553 1 2566 78888888877665544334443 78888888888877433 32
Q ss_pred ---cccc-cCCcEEEecccCCCCC--cc----cCC-CCCccEEEeeCCCcc-----ccchhhcCCC-CCCEEeCCCCCCC
Q 038510 539 ---LGLL-QNLQTLCLNYCNLGDI--AI----IGD-LKKLEILSLRGSDVE-----KLVGEMGQLT-QLRLLDLSKCFEL 601 (871)
Q Consensus 539 ---i~~l-~~Lr~L~L~~~~i~~~--~~----i~~-l~~L~~L~l~~~~i~-----~lp~~i~~L~-~L~~L~l~~~~~l 601 (871)
+..+ ++|++|++++|.++.. .. +.. ..+|++|++++|.+. .++..+..++ +|++|++++| .+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CC
Confidence 3334 7888888888887652 22 334 358888888888777 4555566665 8888888887 45
Q ss_pred CccChhh----hhCC-CCCcEEecccCCCCccccccccchhcccchhhhccC-CCCCeEEEeeccCCCCCc-----chhh
Q 038510 602 KVIPPNV----ISSL-SRLEELYIGESPIQWGTVEGLDSERRNASLHELNHL-SKLTSLEILIQDEKTIPS-----DLLF 670 (871)
Q Consensus 602 ~~~p~~~----i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L-~~L~~L~i~~~~~~~~~~-----~l~~ 670 (871)
+..+... +..+ ++|++|++++|.+..... ......+..+ ++|+.|+++.+.....+. .+..
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~--------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSY--------AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH--------HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH--------HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 5444322 3344 588888888877542110 1122344443 478888888776655433 1244
Q ss_pred hccceeEEEEeee
Q 038510 671 FKILKRYRIFIGY 683 (871)
Q Consensus 671 l~~L~~L~l~~~~ 683 (871)
+++|+.|.+..+.
T Consensus 252 l~~L~~L~L~~n~ 264 (362)
T 3goz_A 252 LKHLQTVYLDYDI 264 (362)
T ss_dssp TTTCSEEEEEHHH
T ss_pred CCCccEEEeccCC
Confidence 5667777776553
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.22 E-value=1.1e-10 Score=119.60 Aligned_cols=177 Identities=12% Similarity=0.177 Sum_probs=118.5
Q ss_pred CCccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHhHHHHHHHHHHhhcccc--------------------c---
Q 038510 148 QDFMHFESRKSTFKEILDALSNRD-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLF--------------------E--- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------------------~--- 203 (871)
.....++||+..++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+ +
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred ccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 334568999999999999987543 3588999999999999999999876532111 0
Q ss_pred -c-c--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcchh-ccccCCcce
Q 038510 204 -K-S--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQDVL-SCKMDCQQN 272 (871)
Q Consensus 204 -~-~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~va-~~~~~~~~~ 272 (871)
. . ........+.+.+. .+++.+||+||++.. ..++.+...+.....+.++|+||+..... .........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~ 179 (250)
T 1njg_A 100 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQ 179 (250)
T ss_dssp EETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred ecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhh
Confidence 0 0 11112223333321 246799999999653 44555555554445677888888765422 111223468
Q ss_pred eeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 038510 273 FFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARAL 325 (871)
Q Consensus 273 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 325 (871)
+++++++.++..+++...+...... --.+..+.|++.|+|.|..+..+...+
T Consensus 180 i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 180 FHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999877432111 123567889999999999888776544
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=1.8e-11 Score=118.73 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=110.2
Q ss_pred ccccceeecccCCcCcCCCCCCCC-CceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCcc-ccccCCcEEEe
Q 038510 473 LKVCTAISLIYSNISELPQGFECP-QLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSL-GLLQNLQTLCL 550 (871)
Q Consensus 473 ~~~~~~lsl~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i-~~l~~Lr~L~L 550 (871)
..+++.+++++|.+..++....+. +|+.|++++|....+ ..|.+++.|++|++++|.++.+|..+ +.+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 457899999999999887666555 999999999988877 34889999999999999999888665 89999999999
Q ss_pred cccCCCC-Cc--ccCCCCCccEEEeeCCCccccchh----hcCCCCCCEEeCCCC
Q 038510 551 NYCNLGD-IA--IIGDLKKLEILSLRGSDVEKLVGE----MGQLTQLRLLDLSKC 598 (871)
Q Consensus 551 ~~~~i~~-~~--~i~~l~~L~~L~l~~~~i~~lp~~----i~~L~~L~~L~l~~~ 598 (871)
++|.++. +. .++.+++|++|++++|.+..+|.. ++.+++|++|+++.|
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 9999988 33 688999999999999999999985 899999999999887
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.21 E-value=7.2e-11 Score=116.16 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=110.2
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcc-cccCCCcceEEEecCCCCCCC-CCccccccCCcEEEeccc
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDN-FFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYC 553 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~ 553 (871)
.+.++++++.+..+|... ..+++.|.+.++.+..++.. .|..++.|++|++++|.++.+ |..+..+++|++|+|++|
T Consensus 10 ~~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 367889999999888755 34999999999988888764 689999999999999999976 678999999999999999
Q ss_pred CCCC-C-cccCCCCCccEEEeeCCCcccc-chhhcCCCCCCEEeCCCCCCCCc
Q 038510 554 NLGD-I-AIIGDLKKLEILSLRGSDVEKL-VGEMGQLTQLRLLDLSKCFELKV 603 (871)
Q Consensus 554 ~i~~-~-~~i~~l~~L~~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~ 603 (871)
.++. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.....
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 9988 3 4589999999999999999977 56789999999999999854433
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.3e-10 Score=114.20 Aligned_cols=121 Identities=21% Similarity=0.330 Sum_probs=107.3
Q ss_pred ceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCC
Q 038510 477 TAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNL 555 (871)
Q Consensus 477 ~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i 555 (871)
+.++++++.+..+|... .++|+.|.+.++.+..+|. .|.++++|++|++++|.++.++ ..+.++++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56788888898888654 4799999999998888884 5899999999999999999776 5699999999999999999
Q ss_pred CC--CcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCC
Q 038510 556 GD--IAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCF 599 (871)
Q Consensus 556 ~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 599 (871)
+. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 87 34699999999999999999999975 7889999999999874
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=1e-11 Score=147.72 Aligned_cols=112 Identities=23% Similarity=0.209 Sum_probs=100.1
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-CcccCCCCCccEEEe
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-IAIIGDLKKLEILSL 572 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~~i~~l~~L~~L~l 572 (871)
.+++|+.|++++|.+..+|..++ ++++|++|+|++|.++.+|..+++|++|++|+|++|.++. |..+++|.+|++|+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 67899999999988888888766 7999999999999999999999999999999999999988 678999999999999
Q ss_pred eCCCccccchhhcCCCCCCEEeCCCCCCCCccCh
Q 038510 573 RGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPP 606 (871)
Q Consensus 573 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~ 606 (871)
++|.++.+|..+++|++|++|++++|...+.+|.
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 9999999999999999999999999854444443
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.9e-10 Score=111.51 Aligned_cols=105 Identities=26% Similarity=0.444 Sum_probs=58.7
Q ss_pred CcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeC
Q 038510 520 TGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDL 595 (871)
Q Consensus 520 ~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l 595 (871)
+.|++|++++|.++.+|. .++.+++|++|++++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 345555555555554443 24555566666666655554 2 2245566666666666666655543 455666666666
Q ss_pred CCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 596 SKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 596 ~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
++| .++.+|...+..+++|++|++.+|.+
T Consensus 108 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 655 44555555445566666666665544
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=1.9e-10 Score=111.55 Aligned_cols=127 Identities=19% Similarity=0.266 Sum_probs=109.4
Q ss_pred cceeecccCCcCcCCCCCCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCc-cccccCCcEEEecccC
Q 038510 476 CTAISLIYSNISELPQGFECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSS-LGLLQNLQTLCLNYCN 554 (871)
Q Consensus 476 ~~~lsl~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~l~~Lr~L~L~~~~ 554 (871)
.+.+.+.++.+..+|... .++|+.|.+.++....++...|.+++.|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 456778888888887544 47999999999988888888889999999999999999988754 6899999999999999
Q ss_pred CCC-C-cccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCCCCCc
Q 038510 555 LGD-I-AIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCFELKV 603 (871)
Q Consensus 555 i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~ 603 (871)
++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.....
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 988 3 3478999999999999999999976 47899999999999854433
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=7.7e-11 Score=135.79 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=71.3
Q ss_pred ceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeCCCc
Q 038510 498 LKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGSDV 577 (871)
Q Consensus 498 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i 577 (871)
|+.|.+++|....+|. |.++++|++|++++|.++.+|..++++++|++|+|++|.++.++.++++++|++|++++|.+
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence 4555555555555553 55666666666666666666666666666666666666666644666666666666666666
Q ss_pred ccc--chhhcCCCCCCEEeCCCCCCCCccChh---hhhCCCCCcEEe
Q 038510 578 EKL--VGEMGQLTQLRLLDLSKCFELKVIPPN---VISSLSRLEELY 619 (871)
Q Consensus 578 ~~l--p~~i~~L~~L~~L~l~~~~~l~~~p~~---~i~~L~~L~~L~ 619 (871)
+.+ |..++.+++|++|++++| .+...|+. .+..+++|+.|+
T Consensus 521 ~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 521 QQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 665 566666666666666665 34444332 123355555553
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.9e-10 Score=132.55 Aligned_cols=102 Identities=23% Similarity=0.233 Sum_probs=90.4
Q ss_pred cceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCCC
Q 038510 521 GLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCF 599 (871)
Q Consensus 521 ~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~ 599 (871)
.|++|++++|.++.+|. ++.+++|++|+|++|.++. |..++++++|++|++++|.++.+| .++++++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 48999999999999987 9999999999999999988 678999999999999999999998 7999999999999997
Q ss_pred CCCcc--ChhhhhCCCCCcEEecccCCCC
Q 038510 600 ELKVI--PPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 600 ~l~~~--p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
.++.+ |.. ++.+++|+.|++++|.+.
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcCC
Confidence 66666 555 899999999999998764
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=1e-09 Score=110.63 Aligned_cols=175 Identities=10% Similarity=0.045 Sum_probs=113.9
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---ccc---c--cchhhHH-HHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFE---K--SHETVRA-GRLLERL 218 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~---~--~~~~~~~-~~l~~~l 218 (871)
.....++||++.++++.+++.....+.+.|+|++|+|||++|+.+++...... .|- . ....... ..+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 33456889999999999999876666699999999999999999998753221 111 1 1111112 2222222
Q ss_pred H-----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcchh-ccccCCcceeeccCCCHHHHHHHHHHH
Q 038510 219 K-----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFRKM 290 (871)
Q Consensus 219 ~-----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~va-~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 290 (871)
. .+++.+||+||++.. ..++.+...+.....+.++|+||+..... .........+.+.+++.++..+++.+.
T Consensus 94 ~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 173 (226)
T 2chg_A 94 RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEI 173 (226)
T ss_dssp TSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred cccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHH
Confidence 2 257899999999765 23344444443345567888888775422 111222348999999999999999887
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 038510 291 TGDCIENGELKSVATEIVKECAGLPIAIVPVAR 323 (871)
Q Consensus 291 ~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 323 (871)
+...... --.+..+.|++.++|.|..+..+..
T Consensus 174 ~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 174 CEKEGVK-ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6421111 1135677899999999986554443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=8.1e-10 Score=106.53 Aligned_cols=101 Identities=24% Similarity=0.419 Sum_probs=70.2
Q ss_pred eEEEecCCCCCCCCCccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCCC
Q 038510 523 KVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKCF 599 (871)
Q Consensus 523 r~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 599 (871)
+.++++++.+..+|..+. .+|++|+|++|.++. +..++++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 566777777777776554 677777777777765 24567777777777777777777765 467777777777775
Q ss_pred CCCccChhhhhCCCCCcEEecccCCCC
Q 038510 600 ELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 600 ~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
.+..+|++.++.+++|++|++.+|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 566666665677777777777776653
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=9e-10 Score=105.82 Aligned_cols=102 Identities=24% Similarity=0.360 Sum_probs=77.9
Q ss_pred ceEEEecCCCCCCCCCccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCCCccccchh-hcCCCCCCEEeCCCC
Q 038510 522 LKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLSKC 598 (871)
Q Consensus 522 Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 598 (871)
.++++++++.++.+|..+. .+|++|+|++|.++. +..++++.+|++|++++|.++.+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677888888888777663 778888888888766 34577888888888888888888765 477888888888886
Q ss_pred CCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 599 FELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 599 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
.+..+|++.+..+++|++|++.+|.+.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 667777766778888888888877653
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=6.3e-12 Score=124.54 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=68.4
Q ss_pred ccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC-CcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEe
Q 038510 516 FTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD-IAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLD 594 (871)
Q Consensus 516 ~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~ 594 (871)
+..+++|++|++++|.++.+| .+..+++|++|++++|.++. +..++.+++|++|++++|.++.+| .++++++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 556666777777776666666 66666777777777776665 344455566777777777666665 466667777777
Q ss_pred CCCCCCCCccCh-hhhhCCCCCcEEecccCCC
Q 038510 595 LSKCFELKVIPP-NVISSLSRLEELYIGESPI 625 (871)
Q Consensus 595 l~~~~~l~~~p~-~~i~~L~~L~~L~l~~~~~ 625 (871)
+++| .+..+|. ..+..+++|++|++.+|.+
T Consensus 122 l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 122 MSNN-KITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ESEE-ECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCCC-cCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 7665 4444443 2356667777777766654
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.01 E-value=1.5e-09 Score=116.47 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=108.8
Q ss_pred CccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--ccchhhHHHHHHHHHHc-
Q 038510 149 DFMHFESRKSTFKEILDALS-----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--KSHETVRAGRLLERLKK- 220 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~~~~~~~~l~~~l~~- 220 (871)
....++|++..++++..++. ......+.|+|++|+|||++|+.+++..... |. ..........+...+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~ 87 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEKPGDLAAILANS 87 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC--EEEECTTTCCSHHHHHHHHTTT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC--EEEEeccccCChHHHHHHHHHh
Confidence 34568999998888888775 2334678899999999999999999876532 32 11111112334444443
Q ss_pred -CCcEEEEEecCCCcc--ChhhhccccCC------------------CCCCcEEEEeecCcc-hhcc-ccCCcceeeccC
Q 038510 221 -EKKILIILDDIWGGL--DLEAIGIPLAD------------------DNSGCKVLLTARSQD-VLSC-KMDCQQNFFVDV 277 (871)
Q Consensus 221 -~kr~LlvlDdv~~~~--~~~~l~~~l~~------------------~~~gs~iivTtr~~~-va~~-~~~~~~~~~l~~ 277 (871)
.+..+|+|||+.... ..+.+...+.. ...+.++|.||.... +... .......+.+.+
T Consensus 88 ~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~ 167 (324)
T 1hqc_A 88 LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEY 167 (324)
T ss_dssp CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCC
T ss_pred ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCC
Confidence 467899999997652 22222111100 012345666666533 2111 112235799999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 038510 278 LNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVARAL 325 (871)
Q Consensus 278 L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 325 (871)
++.++..+++...+..... .--.+..+.|++.++|.|-.+..+...+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999887643221 1124567889999999998877666554
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.00 E-value=1e-11 Score=122.99 Aligned_cols=144 Identities=20% Similarity=0.232 Sum_probs=113.3
Q ss_pred cceEEEecCC--CCCCCCCccccccCCcEEEecccCCCCCcccCCCCCccEEEeeCCCccccchhhcCCCCCCEEeCCCC
Q 038510 521 GLKVLDFTEM--HLLPLPSSLGLLQNLQTLCLNYCNLGDIAIIGDLKKLEILSLRGSDVEKLVGEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 521 ~Lr~L~l~~~--~i~~lp~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 598 (871)
.|+.+.+.++ .++.+|..++.+++|++|++++|.++.++.++++++|++|++++|.++.+|..+..+++|++|++++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 3455555544 45667778999999999999999998866999999999999999999999998889999999999998
Q ss_pred CCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcc-----------
Q 038510 599 FELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSD----------- 667 (871)
Q Consensus 599 ~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~----------- 667 (871)
.++.+| . ++.+++|++|++.+|.+.... .+..+..+++|+.|++..+.....+..
T Consensus 104 -~l~~l~-~-~~~l~~L~~L~l~~N~i~~~~-----------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 104 -QIASLS-G-IEKLVNLRVLYMSNNKITNWG-----------EIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp -ECCCHH-H-HHHHHHSSEEEESEEECCCHH-----------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred -cCCcCC-c-cccCCCCCEEECCCCcCCchh-----------HHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 667776 3 889999999999998764211 234688899999999997765333211
Q ss_pred hhhhccceeEE
Q 038510 668 LLFFKILKRYR 678 (871)
Q Consensus 668 l~~l~~L~~L~ 678 (871)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 35566676653
No 148
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=4.9e-09 Score=112.34 Aligned_cols=177 Identities=13% Similarity=0.083 Sum_probs=115.6
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cc---cccc--hhhHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LF---EKSH--ETVRAGRLLERLK 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F---~~~~--~~~~~~~l~~~l~ 219 (871)
.....++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++...... .| +..+ ....+..+.+.+.
T Consensus 18 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (323)
T 1sxj_B 18 QVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFA 97 (323)
T ss_dssp SSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred CCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHH
Confidence 34566889999999999999877666699999999999999999998753211 11 1111 1223333333333
Q ss_pred -------cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcch-hccccCCcceeeccCCCHHHHHHHHHH
Q 038510 220 -------KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQDV-LSCKMDCQQNFFVDVLNEKEAWSLFRK 289 (871)
Q Consensus 220 -------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v-a~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (871)
.+++.++|+||++.. ..++.+...+.....++++|+||+...- ..........+.+.+++.++..+++..
T Consensus 98 ~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 177 (323)
T 1sxj_B 98 QKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQ 177 (323)
T ss_dssp HBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred hccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHH
Confidence 345899999999764 2344444443333456788888866432 111223345899999999999999988
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCchh-HHHHHHHHH
Q 038510 290 MTGDCIENGELKSVATEIVKECAGLPI-AIVPVARAL 325 (871)
Q Consensus 290 ~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~~l 325 (871)
.+...... --.+..+.|++.|+|.|. |+..+....
T Consensus 178 ~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 178 IIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTV 213 (323)
T ss_dssp HHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 76421111 113567889999999995 455554443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=3.1e-09 Score=102.40 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=72.3
Q ss_pred eEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCCCC-Ccc-cCCCCCccEEEeeCC
Q 038510 499 KYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNLGD-IAI-IGDLKKLEILSLRGS 575 (871)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~-~~~-i~~l~~L~~L~l~~~ 575 (871)
+.++++++....+|..+. ..|++|++++|.+..+ |..++++++|++|+|++|.++. +.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 455555555566665542 6778888888888766 4567888888888888888877 333 578888888888888
Q ss_pred Cccccchh-hcCCCCCCEEeCCCC
Q 038510 576 DVEKLVGE-MGQLTQLRLLDLSKC 598 (871)
Q Consensus 576 ~i~~lp~~-i~~L~~L~~L~l~~~ 598 (871)
.++.+|.. +..+++|++|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 88888865 778888888888887
No 150
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.89 E-value=1.5e-08 Score=111.58 Aligned_cols=255 Identities=12% Similarity=0.043 Sum_probs=144.9
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc---------cccc------cc-ch---
Q 038510 151 MHFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN---------NLFE------KS-HE--- 207 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------~~F~------~~-~~--- 207 (871)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++..... ..|- .. +.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 568999999999887765 3446789999999999999999999876332 1111 00 10
Q ss_pred --------------------hhHHHHHHHHHHcCCcEEEEEecCCCccC--hhhh-ccccCCCCCCcEEEEeecCcchh-
Q 038510 208 --------------------TVRAGRLLERLKKEKKILIILDDIWGGLD--LEAI-GIPLADDNSGCKVLLTARSQDVL- 263 (871)
Q Consensus 208 --------------------~~~~~~l~~~l~~~kr~LlvlDdv~~~~~--~~~l-~~~l~~~~~gs~iivTtr~~~va- 263 (871)
......+.+.+.. ++.+|||||++.... +... ...+.....+.+||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 1122333444443 445999999976521 1222 22222211677889998875321
Q ss_pred ---cc-ccCCcceeeccCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHcC---Cchh-HHHHHHHHHh---c---C
Q 038510 264 ---SC-KMDCQQNFFVDVLNEKEAWSLFRKMTGD-CIENGELKSVATEIVKECA---GLPI-AIVPVARALI---N---K 328 (871)
Q Consensus 264 ---~~-~~~~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~l~---~---~ 328 (871)
.. ...-...+.+++++.++..++|...+.. .....--.+..+.|++.++ |.|. |+..+-.+.. + -
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 10 1121238999999999999999987531 1111111345677888887 8886 4444444332 1 2
Q ss_pred ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHHHHHhhcc-cccchh-hhHHHHhhcccccccccchH
Q 038510 329 RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKRTFLLIGY-AFISCV-KDVLYHGMGLGLFQNINTSE 406 (871)
Q Consensus 329 ~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~-fp~~~~-~~li~~w~aeg~i~~~~~~~ 406 (871)
+.+++..++..... ..+.-++..|+++ .+..+..++. +..-+. +.....--..| +.. .
T Consensus 259 ~~~~v~~~~~~~~~--------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~~~~~~~~~~~g-~~~-~--- 318 (384)
T 2qby_B 259 RKEHVDKAIVDYEQ--------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAHKMYTDLCNKFK-QKP-L--- 318 (384)
T ss_dssp CHHHHHHHHHHHHH--------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHHHHHHHHHHHTT-CCC-C---
T ss_pred CHHHHHHHHHHHhc--------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHHHHHHHHHHHcC-CCC-C---
Confidence 67777777665321 2244556778876 4555444554 111011 01111111112 110 0
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 038510 407 EAWDRAHTLVDKLKKSCLLVD 427 (871)
Q Consensus 407 ~~~~~~~~~~~~L~~~~l~~~ 427 (871)
....+.++++.|...+++..
T Consensus 319 -~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 319 -SYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp -CHHHHHHHHHHHHHTTSEEE
T ss_pred -CHHHHHHHHHHHHhCCCEEE
Confidence 12345678889999999954
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=7.5e-09 Score=99.30 Aligned_cols=98 Identities=20% Similarity=0.232 Sum_probs=67.5
Q ss_pred eEEEecCCCCCccCcccccCCCcceEEEecCCCCCCC-CCccccccCCcEEEecccCCCC-Cc-ccCCCCCccEEEeeCC
Q 038510 499 KYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPL-PSSLGLLQNLQTLCLNYCNLGD-IA-IIGDLKKLEILSLRGS 575 (871)
Q Consensus 499 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~-~~-~i~~l~~L~~L~l~~~ 575 (871)
+.++++++....+|..+ .+.|++|++++|.++.+ |..+..+.+|++|+|++|.++. ++ .+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34445555555555443 25677777777777766 4567777778888888777766 33 3577788888888888
Q ss_pred Cccccchh-hcCCCCCCEEeCCCCC
Q 038510 576 DVEKLVGE-MGQLTQLRLLDLSKCF 599 (871)
Q Consensus 576 ~i~~lp~~-i~~L~~L~~L~l~~~~ 599 (871)
.++.+|.. +.++++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 88877764 7778888888887763
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=9.2e-09 Score=110.51 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=92.3
Q ss_pred CCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCC----CCC--cccC-----
Q 038510 495 CPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNL----GDI--AIIG----- 562 (871)
Q Consensus 495 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i----~~~--~~i~----- 562 (871)
|++|+.+.+.+ ....++...|.++.+|+.++++++.+..++ ..+.++.++.++.+..... ..+ ..+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777776 666677777777788888888777766544 3455555565555443110 000 0000
Q ss_pred ---------------------------------------------CCCCccEEEeeCCCccccchh-hcCCCCCCEEeCC
Q 038510 563 ---------------------------------------------DLKKLEILSLRGSDVEKLVGE-MGQLTQLRLLDLS 596 (871)
Q Consensus 563 ---------------------------------------------~l~~L~~L~l~~~~i~~lp~~-i~~L~~L~~L~l~ 596 (871)
.+.+|+.|++.+|+++.+|.. +.++.+|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 255666666666666666643 5566666666666
Q ss_pred CCCCCCccChhhhhCCCCCc-EEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcc-hhhhccc
Q 038510 597 KCFELKVIPPNVISSLSRLE-ELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSD-LLFFKIL 674 (871)
Q Consensus 597 ~~~~l~~~p~~~i~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~-l~~l~~L 674 (871)
.+ +..++.+.+..+++|+ .+.+..+ +.. -.-..+.+|++|+.+.+..+.+..++.. +..+++|
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~~-l~~------------I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPAS-VTA------------IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECTT-CCE------------ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred cc--cceehHHHhhCChhccEEEEEccc-ceE------------EchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 53 5566666566666666 6665441 110 0113355566666666655555444442 2444455
Q ss_pred eeE
Q 038510 675 KRY 677 (871)
Q Consensus 675 ~~L 677 (871)
+.+
T Consensus 324 ~~l 326 (329)
T 3sb4_A 324 KLI 326 (329)
T ss_dssp CEE
T ss_pred hhh
Confidence 443
No 153
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.81 E-value=3.3e-08 Score=108.77 Aligned_cols=253 Identities=14% Similarity=0.101 Sum_probs=144.1
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc-------cccc--c-c---c-------
Q 038510 151 MHFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-------NLFE--K-S---H------- 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------~~F~--~-~---~------- 206 (871)
..++||+++++++..++. ....+.+.|+|++|+||||+|+.+++..... ..|- . . +
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 568999999999999884 3456789999999999999999999876432 1221 0 0 0
Q ss_pred ---------------hhhHHHHHHHHHH-cCCcEEEEEecCCCccC----hhhhccccC--CC---CCCcEEEEeecCcc
Q 038510 207 ---------------ETVRAGRLLERLK-KEKKILIILDDIWGGLD----LEAIGIPLA--DD---NSGCKVLLTARSQD 261 (871)
Q Consensus 207 ---------------~~~~~~~l~~~l~-~~kr~LlvlDdv~~~~~----~~~l~~~l~--~~---~~gs~iivTtr~~~ 261 (871)
.......+.+.+. .+++.+|||||++.... .+.+...+. .. ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 1112334444443 24688999999976532 122211111 11 34556777777653
Q ss_pred hh----cc-ccCC-cceeeccCCCHHHHHHHHHHHhC---C-CCCCchhHHHHHHHHHHcC---Cch-hHHHHHHHHHh-
Q 038510 262 VL----SC-KMDC-QQNFFVDVLNEKEAWSLFRKMTG---D-CIENGELKSVATEIVKECA---GLP-IAIVPVARALI- 326 (871)
Q Consensus 262 va----~~-~~~~-~~~~~l~~L~~~~~~~Lf~~~~~---~-~~~~~~l~~~~~~I~~~c~---GlP-Lai~~~~~~l~- 326 (871)
.. .. .... ...+.+++++.++..+++...+. . ...+ .++.+.|++.++ |.| .|+..+..+..
T Consensus 179 ~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 179 FVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp TSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 21 00 1111 24799999999999999988753 1 1112 235667888887 999 34444333322
Q ss_pred ----cC---ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHHHHHhhc-ccc---cchhhhHHHHhh-
Q 038510 327 ----NK---RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKRTFLLIG-YAF---ISCVKDVLYHGM- 394 (871)
Q Consensus 327 ----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s-~fp---~~~~~~li~~w~- 394 (871)
+. +.+.+..++..... ..+.-++..|+.+ .+..+...+ ++. .+...++.+...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~~--------------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIER--------------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHHH--------------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHhh--------------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 11 56677766655311 1234456788887 454444444 221 233333333221
Q ss_pred ---cccccccccchHHHHHHHHHHHHHHHHhccccc
Q 038510 395 ---GLGLFQNINTSEEAWDRAHTLVDKLKKSCLLVD 427 (871)
Q Consensus 395 ---aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 427 (871)
..| +.+ . ....+.++++.|...+++..
T Consensus 321 ~~~~~~-~~~-~----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 321 LTSTLG-LEH-V----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHTT-CCC-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcC-CCC-C----CHHHHHHHHHHHHhCCCeEE
Confidence 112 111 0 12345567888888998854
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.80 E-value=3.4e-08 Score=108.59 Aligned_cols=214 Identities=15% Similarity=0.088 Sum_probs=125.2
Q ss_pred cccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhc----cccc--c----c-----------
Q 038510 151 MHFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFE--K----S----------- 205 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~--~----~----------- 205 (871)
..|+||+++++++.+++. ....+.+.|+|++|+||||||+.+++..... ..+- . .
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999887 4456789999999999999999999876432 1111 0 0
Q ss_pred -----------chhhHHHHHHHHHHc-CCcEEEEEecCCCcc------ChhhhccccCC-CCCCcEEEEeecCcchhcc-
Q 038510 206 -----------HETVRAGRLLERLKK-EKKILIILDDIWGGL------DLEAIGIPLAD-DNSGCKVLLTARSQDVLSC- 265 (871)
Q Consensus 206 -----------~~~~~~~~l~~~l~~-~kr~LlvlDdv~~~~------~~~~l~~~l~~-~~~gs~iivTtr~~~va~~- 265 (871)
........+.+.+.. +++.+||||+++... .+..+...+.. ...+..+|+||+.......
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 011223344445543 348999999997542 12222221111 2335567888876543210
Q ss_pred ----ccC-CcceeeccCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHcC---CchhHH-HHHHHHHh-----c--C
Q 038510 266 ----KMD-CQQNFFVDVLNEKEAWSLFRKMTGD-CIENGELKSVATEIVKECA---GLPIAI-VPVARALI-----N--K 328 (871)
Q Consensus 266 ----~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPLai-~~~~~~l~-----~--~ 328 (871)
... ....+.+++++.++..+++...+.. .....-..++.+.|++.++ |.|..+ .++..+.. + .
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 011 1247999999999999999886531 1111122456677777777 999744 43333321 1 1
Q ss_pred -ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHHHHHhhc
Q 038510 329 -RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKRTFLLIG 379 (871)
Q Consensus 329 -~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s 379 (871)
+.+.+..++.... ...+.-++..+|.+ .+..+..++
T Consensus 260 i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~ 296 (386)
T 2qby_A 260 VKEEYVYMAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVV 296 (386)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHH
Confidence 5556666555421 11234445677776 454444444
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=8.9e-09 Score=110.64 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=66.1
Q ss_pred CCcceEEEecCCCCCCCCCcccc-ccCCcEEEecccCCCCC-cccCCCCCccEEEeeCCCccccch-hhcC--------C
Q 038510 519 MTGLKVLDFTEMHLLPLPSSLGL-LQNLQTLCLNYCNLGDI-AIIGDLKKLEILSLRGSDVEKLVG-EMGQ--------L 587 (871)
Q Consensus 519 l~~Lr~L~l~~~~i~~lp~~i~~-l~~Lr~L~L~~~~i~~~-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~--------L 587 (871)
+..++.|.++|+--..-...+.. +.+|++|+|++|.+... ..-+.++.+..+.+..+ .+|. .+.+ +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 45677888876421111122333 77889999998887731 11223333455555554 4443 3566 8
Q ss_pred CCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCC
Q 038510 588 TQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQ 626 (871)
Q Consensus 588 ~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~ 626 (871)
++|+.|++.. .++.++.+.+..+++|+.+.+..+.+.
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCcc
Confidence 9999999987 678888888889999999999877653
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=3.7e-08 Score=105.68 Aligned_cols=176 Identities=14% Similarity=0.074 Sum_probs=113.8
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---ccc---ccchh--hHH-HHHHHHHH
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFE---KSHET--VRA-GRLLERLK 219 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~---~~~~~--~~~-~~l~~~l~ 219 (871)
....++|+++.++.+.+++..+..+.+.++|++|+||||+|+.+++...... .|- ..+.. ... ..+.....
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFAR 102 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHh
Confidence 3456889999999999998877666799999999999999999998753221 111 11111 111 11222221
Q ss_pred -----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcchh-ccccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 220 -----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQDVL-SCKMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 220 -----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~va-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
.+++.++|+||++.. ..++.+...+.....+.++|+||....-. .........+.+.+++.++..+++...+
T Consensus 103 ~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~ 182 (327)
T 1iqp_A 103 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 182 (327)
T ss_dssp SCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHH
Confidence 146789999999765 33444544443344567888888764321 1111223478999999999999998876
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchhHHHHHHHHH
Q 038510 292 GDCIENGELKSVATEIVKECAGLPIAIVPVARAL 325 (871)
Q Consensus 292 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 325 (871)
..... .--.+..+.|++.++|.|..+..+...+
T Consensus 183 ~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 183 ENEGL-ELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 43221 1124567889999999998665544433
No 157
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.68 E-value=2.6e-07 Score=101.70 Aligned_cols=256 Identities=13% Similarity=0.094 Sum_probs=144.5
Q ss_pred cccccchHHHHHHHHHhcC----CCce--EEEEEcCCCCcHhHHHHHHHHHHhhcc--ccc--c----c-----------
Q 038510 151 MHFESRKSTFKEILDALSN----RDFN--MIGVYGMGGIGKTTLVKEVGRQAKENN--LFE--K----S----------- 205 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~--~----~----------- 205 (871)
..++||+++++++.+++.. .... .+.|+|++|+||||+|+.+++...... .|- . .
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 4689999999999988863 2333 899999999999999999998875431 111 0 0
Q ss_pred -----------chhhHHHHHHHHHH-cCCcEEEEEecCCCc--cChhhhccccCC-CC---CCcEEEEeecCcchhccc-
Q 038510 206 -----------HETVRAGRLLERLK-KEKKILIILDDIWGG--LDLEAIGIPLAD-DN---SGCKVLLTARSQDVLSCK- 266 (871)
Q Consensus 206 -----------~~~~~~~~l~~~l~-~~kr~LlvlDdv~~~--~~~~~l~~~l~~-~~---~gs~iivTtr~~~va~~~- 266 (871)
........+.+.+. .+++.+|||||++.. .....+...+.. .. .+..||+||+........
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 00111223333332 246899999999765 223333222221 11 366788888775432100
Q ss_pred ----c-CCcceeeccCCCHHHHHHHHHHHhCC-CCCCchhHHHHHHHHHHc---------CCchhHHHHHHH-HHh----
Q 038510 267 ----M-DCQQNFFVDVLNEKEAWSLFRKMTGD-CIENGELKSVATEIVKEC---------AGLPIAIVPVAR-ALI---- 326 (871)
Q Consensus 267 ----~-~~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c---------~GlPLai~~~~~-~l~---- 326 (871)
. -....+.+++++.++..+++...+.. .....--.+..+.|++.+ +|.|..+..+.. +..
T Consensus 177 ~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 177 PSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 0 11236999999999999999887532 001112245678899999 788754444332 221
Q ss_pred -cC---ChhHHHHHHHHhcCCCCCCccchhhhhheecccccccCChhhHHHHHHhhcccc------cchhhhHHHHhhc-
Q 038510 327 -NK---RLFEWKDSLLELRRPSFRNISGTLEVAYKSIELSYNHLNREELKRTFLLIGYAF------ISCVKDVLYHGMG- 395 (871)
Q Consensus 327 -~~---~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp------~~~~~~li~~w~a- 395 (871)
+. +.+....+..... ...+.-.+..||.+ .+.++..++.+. .+....+...+-.
T Consensus 257 ~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 257 NGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp TTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred hCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 3333333333321 12233345678877 566666555432 2333333332221
Q ss_pred ---ccccccccchHHHHHHHHHHHHHHHHhccccc
Q 038510 396 ---LGLFQNINTSEEAWDRAHTLVDKLKKSCLLVD 427 (871)
Q Consensus 396 ---eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 427 (871)
.|... . ....+.+++++|...+++..
T Consensus 322 ~~~~~~~~----~--~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 322 CEEYGERP----R--VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHTTCCC----C--CHHHHHHHHHHHHHTTSSEE
T ss_pred HHHcCCCC----C--CHHHHHHHHHHHHhCCCeEE
Confidence 12110 0 12345678999999999954
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.61 E-value=8.1e-08 Score=103.97 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=51.3
Q ss_pred EecCC-CCCCCCCccccccCCcEEEecc-cCCCC-C-cccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCC
Q 038510 526 DFTEM-HLLPLPSSLGLLQNLQTLCLNY-CNLGD-I-AIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFE 600 (871)
Q Consensus 526 ~l~~~-~i~~lp~~i~~l~~Lr~L~L~~-~~i~~-~-~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~ 600 (871)
+++++ .++.+|. ++.+.+|++|+|++ |.++. + ..+++|.+|++|+|++|.++.+|. .+.+|++|++|+|++| .
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-A 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-C
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-c
Confidence 45554 4555555 55555555555554 55554 2 335555555555555555555543 3455555555555554 4
Q ss_pred CCccChhhhhCCCCCcEEecccCCC
Q 038510 601 LKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 601 l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
+..+|++.+..++ |+.|++.+|.+
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCc
Confidence 4555554333333 55555555544
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.59 E-value=5e-07 Score=96.35 Aligned_cols=174 Identities=9% Similarity=0.052 Sum_probs=111.8
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc---cccc---ccc--hhhHHHHHHHHHH-
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN---NLFE---KSH--ETVRAGRLLERLK- 219 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~---~~~--~~~~~~~l~~~l~- 219 (871)
....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++..... ..|- ... ...........+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHh
Confidence 345688999999999999887766669999999999999999999875211 1121 111 1111111112221
Q ss_pred -----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcc-hhccccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 220 -----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 220 -----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
.+++.++|+||+... ...+.+...+.....+.++|+||.... +..........+.+.+++.++..+++...+
T Consensus 95 ~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 95 TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp SCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHH
Confidence 246789999999764 234445444444445677888776643 211112234589999999999999998776
Q ss_pred CCCCCCchhHHHHHHHHHHcCCchhHHHHHHH
Q 038510 292 GDCIENGELKSVATEIVKECAGLPIAIVPVAR 323 (871)
Q Consensus 292 ~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 323 (871)
...... --.+..+.|++.++|.+..+.....
T Consensus 175 ~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 175 EKEGVK-ITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp HTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 432211 1245677889999999876554433
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.57 E-value=3.8e-07 Score=99.74 Aligned_cols=172 Identities=11% Similarity=0.172 Sum_probs=111.7
Q ss_pred ccccccchHHHHHHHHHhcCCC-ceEEEEEcCCCCcHhHHHHHHHHHHhhcccc--------------------c-----
Q 038510 150 FMHFESRKSTFKEILDALSNRD-FNMIGVYGMGGIGKTTLVKEVGRQAKENNLF--------------------E----- 203 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------------------~----- 203 (871)
...++|++..++.+..++..+. ...+.|+|+.|+||||+|+.+++.......+ +
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 4568999999999999887544 3578899999999999999998876432110 1
Q ss_pred cc--chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcc-hhccccCCcceee
Q 038510 204 KS--HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNFF 274 (871)
Q Consensus 204 ~~--~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~~ 274 (871)
.. ........+.+.+. .+++.++|+||+... ..++.+...+.....+..+|++|.... +..........++
T Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 174 (373)
T 1jr3_A 95 AASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 174 (373)
T ss_dssp TTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred ccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEee
Confidence 00 11123344555443 245789999999654 334445444433344566777776533 2211223346899
Q ss_pred ccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 038510 275 VDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVA 322 (871)
Q Consensus 275 l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 322 (871)
+.+++.++..+++...+...... --.+..+.|++.++|.|..+..+.
T Consensus 175 ~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 175 LKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 99999999999998766321111 113557789999999998776554
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.56 E-value=3.4e-06 Score=92.52 Aligned_cols=263 Identities=13% Similarity=0.105 Sum_probs=160.9
Q ss_pred CCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCC--CcccCCCCCccEEE
Q 038510 495 CPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILS 571 (871)
Q Consensus 495 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~ 571 (871)
+..++.+.+.+ ....++...|.++ .|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++. ...+.+|.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35555555543 3455666777775 6888888765 555553 3445 3688888876 5555 35678889999999
Q ss_pred eeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCC
Q 038510 572 LRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKL 651 (871)
Q Consensus 572 l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 651 (871)
+..|.++.+|...-...+|+.+.+.. .+..++...+..+++|+.+.+..+-... .-..+.+ .+|
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I-------------~~~aF~~-~~L 250 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTI-------------GQEAFRE-SGI 250 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEE-------------CTTTTTT-CCC
T ss_pred cCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCc-------------ccccccc-CCc
Confidence 98888888887655578999998875 4778888888888899999886542110 0122334 578
Q ss_pred CeEEEeeccCCCCC-cchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeeccC
Q 038510 652 TSLEILIQDEKTIP-SDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGLL 730 (871)
Q Consensus 652 ~~L~i~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 730 (871)
+.+.+. +....++ ..+..+++|+.+.+..+.... .....++......+++|+.+.+..
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~------------------~~~~~I~~~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND------------------DPEAMIHPYCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC------------------CTTCEECTTTTTTCTTCCEECCCT--
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC------------------CcccEECHHHhhCCccCCeEEeCC--
Confidence 888774 2333343 334566777777764322100 000023334445567788888763
Q ss_pred CceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCcccc-CCCCeEEE
Q 038510 731 DMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESF-CKLKNIRV 809 (871)
Q Consensus 731 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~-~~L~~L~l 809 (871)
.++.+... .+.++++|+.+.|.+ +++.+... ....+ +|+.+.+.+. .+..+....|. .+ .+++.|.+
T Consensus 310 ~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~~-----aF~~~-~L~~l~l~~n-~~~~l~~~~F~--~~~~~l~~l~v 377 (401)
T 4fdw_A 310 SIRILGQG-LLGGNRKVTQLTIPA--NVTQINFS-----AFNNT-GIKEVKVEGT-TPPQVFEKVWY--GFPDDITVIRV 377 (401)
T ss_dssp TCCEECTT-TTTTCCSCCEEEECT--TCCEECTT-----SSSSS-CCCEEEECCS-SCCBCCCSSCC--CSCTTCCEEEE
T ss_pred ceEEEhhh-hhcCCCCccEEEECc--cccEEcHH-----hCCCC-CCCEEEEcCC-CCccccccccc--CCCCCccEEEe
Confidence 34443322 246788899998854 46665322 23345 8888888873 44444433332 23 35677766
Q ss_pred ec
Q 038510 810 QR 811 (871)
Q Consensus 810 ~~ 811 (871)
-.
T Consensus 378 p~ 379 (401)
T 4fdw_A 378 PA 379 (401)
T ss_dssp CG
T ss_pred CH
Confidence 54
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=1.4e-08 Score=110.64 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=8.2
Q ss_pred cccceeecccCCcC
Q 038510 474 KVCTAISLIYSNIS 487 (871)
Q Consensus 474 ~~~~~lsl~~~~~~ 487 (871)
..++.+++++|.+.
T Consensus 72 ~~L~~L~Ls~n~l~ 85 (372)
T 3un9_A 72 SSLRQLNLAGVRMT 85 (372)
T ss_dssp TTCCEEECTTSCCC
T ss_pred hhCCEEEecCCCCC
Confidence 45666666666553
No 163
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.50 E-value=3.2e-07 Score=89.66 Aligned_cols=136 Identities=15% Similarity=0.211 Sum_probs=82.3
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc--------cccc---------ccch----h
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFE---------KSHE----T 208 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~---------~~~~----~ 208 (871)
...++||++.++++.+++.....+.+.|+|++|+|||++|+.+++..... ..+- .... .
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 100 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHH
Confidence 45688999999999999987667788999999999999999999876431 1111 0010 1
Q ss_pred hHHHHHHHHH-HcCCcEEEEEecCCCcc---------C-hhhhccccCCCCCCcEEEEeecCcchh------ccccCCcc
Q 038510 209 VRAGRLLERL-KKEKKILIILDDIWGGL---------D-LEAIGIPLADDNSGCKVLLTARSQDVL------SCKMDCQQ 271 (871)
Q Consensus 209 ~~~~~l~~~l-~~~kr~LlvlDdv~~~~---------~-~~~l~~~l~~~~~gs~iivTtr~~~va------~~~~~~~~ 271 (871)
.....+.+.+ ..+++.+|||||++... . .+.+...+ .. .+..+|.||...... ........
T Consensus 101 ~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~l~~r~~ 178 (195)
T 1jbk_A 101 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGATTLDEYRQYIEKDAALERRFQ 178 (195)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HT-TSCCEEEEECHHHHHHHTTTCHHHHTTEE
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-cc-CCeEEEEeCCHHHHHHHHhcCHHHHHHhc
Confidence 1222333333 23567899999997541 1 22222211 12 234466666554311 11112223
Q ss_pred eeeccCCCHHHHHHHH
Q 038510 272 NFFVDVLNEKEAWSLF 287 (871)
Q Consensus 272 ~~~l~~L~~~~~~~Lf 287 (871)
.+.+++++.++..+++
T Consensus 179 ~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 179 KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECCCCCHHHHHTTC
T ss_pred eeecCCCCHHHHHHHh
Confidence 6888899888776543
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=2e-07 Score=100.89 Aligned_cols=90 Identities=23% Similarity=0.126 Sum_probs=51.0
Q ss_pred CCCccCcccccCCCcceEEEecC-CCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccEEEeeCCCccccch
Q 038510 507 PSLRIPDNFFTGMTGLKVLDFTE-MHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEILSLRGSDVEKLVG 582 (871)
Q Consensus 507 ~~~~~~~~~~~~l~~Lr~L~l~~-~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L~l~~~~i~~lp~ 582 (871)
....+|. +..+.+|++|+|++ |.+..+| ..+++|.+|++|+|++|.++. +..+++|++|++|+|++|.++.+|.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence 3444444 45555666666664 6665554 345666666666666666655 2345666666666666666666665
Q ss_pred hhcCCCCCCEEeCCCC
Q 038510 583 EMGQLTQLRLLDLSKC 598 (871)
Q Consensus 583 ~i~~L~~L~~L~l~~~ 598 (871)
.+....+|++|++.+|
T Consensus 98 ~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGN 113 (347)
T ss_dssp TTTCSCCCCEEECCSS
T ss_pred HHcccCCceEEEeeCC
Confidence 4333333666666655
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=1.7e-06 Score=95.05 Aligned_cols=234 Identities=15% Similarity=0.141 Sum_probs=121.3
Q ss_pred CceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC-CcccCCCCCccEEEeeC
Q 038510 497 QLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD-IAIIGDLKKLEILSLRG 574 (871)
Q Consensus 497 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~-~~~i~~l~~L~~L~l~~ 574 (871)
+|+.+.+..+ ...++...|.++ .|+.+.+.. .+..++ ..+.++.+|+.+++..|.++. +.....+.+|+.+.+..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC
Confidence 5666665543 445555556653 466666664 444443 346666677777776666655 23323356666666653
Q ss_pred CCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCe
Q 038510 575 SDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTS 653 (871)
Q Consensus 575 ~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 653 (871)
.++.++. .+.++++|+.+.+.. .+..++...+.. ++|+.+.+..+-.. -.-..+.++++|+.
T Consensus 213 -~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~~-------------I~~~aF~~c~~L~~ 275 (401)
T 4fdw_A 213 -TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNGVTN-------------IASRAFYYCPELAE 275 (401)
T ss_dssp -TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETTCCE-------------ECTTTTTTCTTCCE
T ss_pred -chheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCCccE-------------EChhHhhCCCCCCE
Confidence 3555553 355666677666664 355566555555 56666665332110 01123555666666
Q ss_pred EEEeeccCC-----CCC-cchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEee
Q 038510 654 LEILIQDEK-----TIP-SDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLH 727 (871)
Q Consensus 654 L~i~~~~~~-----~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 727 (871)
+.+..+... .++ ..+..+.+|+.+.+..+-..-....+..+.++..+.+..+. ..++......+ +|+.+.+.
T Consensus 276 l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l-~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 276 VTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPANV-TQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTTC-CEECTTSSSSS-CCCEEEEC
T ss_pred EEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECccc-cEEcHHhCCCC-CCCEEEEc
Confidence 666543322 122 22344555665554311000012233334556666664443 23444444455 89999998
Q ss_pred ccCCceeccccCCCCCCC-CccEEEeec
Q 038510 728 GLLDMKNVLCEPGREGFP-QLKHLEVRD 754 (871)
Q Consensus 728 ~~~~~~~~~~~~~~~~l~-~L~~L~L~~ 754 (871)
++.... +... ...+++ +++.|++-.
T Consensus 354 ~n~~~~-l~~~-~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 354 GTTPPQ-VFEK-VWYGFPDDITVIRVPA 379 (401)
T ss_dssp CSSCCB-CCCS-SCCCSCTTCCEEEECG
T ss_pred CCCCcc-cccc-cccCCCCCccEEEeCH
Confidence 764332 2111 124453 677887765
No 166
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.43 E-value=2.2e-06 Score=89.71 Aligned_cols=168 Identities=17% Similarity=0.208 Sum_probs=103.0
Q ss_pred CccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------c
Q 038510 149 DFMHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------K 204 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~ 204 (871)
....++|.++.++++.+++.. ...+-+.|+|++|+|||++|+.+++..... |- .
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~--~~~v~~~~~~~~~~ 92 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT--FIRVVGSELVKKFI 92 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE--EEEEEGGGGCCCST
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEehHHHHHhcc
Confidence 356688999999988887641 345678999999999999999999876542 22 0
Q ss_pred cchhhHHHHHHHHHHcCCcEEEEEecCCCcc------------C-hhhh---ccccC--CCCCCcEEEEeecCcchhc-c
Q 038510 205 SHETVRAGRLLERLKKEKKILIILDDIWGGL------------D-LEAI---GIPLA--DDNSGCKVLLTARSQDVLS-C 265 (871)
Q Consensus 205 ~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~-~~~l---~~~l~--~~~~gs~iivTtr~~~va~-~ 265 (871)
.........+.......++.+|+|||+.... . ...+ ...+. ....+..||.||....... .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~ 172 (285)
T 3h4m_A 93 GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPA 172 (285)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHH
T ss_pred chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHH
Confidence 1112233444455555567899999996430 1 1111 11111 1233566777776543321 0
Q ss_pred cc---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHH
Q 038510 266 KM---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVP 320 (871)
Q Consensus 266 ~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~ 320 (871)
.. .-...+.++..+.++-.+++...+........ .....|++.+.|. |-.+..
T Consensus 173 l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 173 ILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp HHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHH
T ss_pred HcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHH
Confidence 11 22347899999999999999988764322211 1145677778774 534443
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.3e-06 Score=94.73 Aligned_cols=173 Identities=13% Similarity=0.089 Sum_probs=107.2
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc----cccc---cc--chhhHHHHHHHHHH
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN----NLFE---KS--HETVRAGRLLERLK 219 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~---~~--~~~~~~~~l~~~l~ 219 (871)
....++|+++.++.+..++..+..+.+.++|++|+||||+|+.+++..... ..|. .. ............+.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHh
Confidence 345688999999999999987755568999999999999999999875421 1111 11 11111111111111
Q ss_pred ----------------cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcc-hhccccCCcceeeccCCCH
Q 038510 220 ----------------KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNE 280 (871)
Q Consensus 220 ----------------~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~~l~~L~~ 280 (871)
..++-++++|++... ...+.+...+.......++|++|.... +..........+.+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~ 194 (353)
T 1sxj_D 115 RLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDA 194 (353)
T ss_dssp HSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCH
T ss_pred hhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCH
Confidence 124569999998654 223334333333334567777765432 2211112234789999999
Q ss_pred HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 038510 281 KEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVA 322 (871)
Q Consensus 281 ~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 322 (871)
++..+.+...+...... --++..+.|++.++|.|-.+..+.
T Consensus 195 ~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 195 SNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999998876432211 124567889999999997655443
No 168
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.36 E-value=3.1e-06 Score=93.76 Aligned_cols=171 Identities=13% Similarity=0.191 Sum_probs=105.3
Q ss_pred CCccccccchHHH---HHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc----cchhhHH----HHHHH
Q 038510 148 QDFMHFESRKSTF---KEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK----SHETVRA----GRLLE 216 (871)
Q Consensus 148 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~----~~~~~~~----~~l~~ 216 (871)
.....++|.+..+ ..+...+..+..+.+.++|++|+||||+|+.+++.... .|.. ......+ .....
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~--~f~~l~a~~~~~~~ir~~~~~a~~ 100 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA--DVERISAVTSGVKEIREAIERARQ 100 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC--EEEEEETTTCCHHHHHHHHHHHHH
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC--CeEEEEeccCCHHHHHHHHHHHHH
Confidence 3455688998887 67777777777788999999999999999999987653 2431 1111112 22222
Q ss_pred HHHcCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEE-EeecCcc--hhccccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 217 RLKKEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVL-LTARSQD--VLSCKMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 217 ~l~~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ii-vTtr~~~--va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
....+++.+|+||++... ...+.+...+.. +. ..+| .||.+.. +.........++.+++++.++...++.+.+
T Consensus 101 ~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~-v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 101 NRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GT-ITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp HHHTTCCEEEEEETTTCC------CCHHHHHT-TS-CEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-Cc-eEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHH
Confidence 222357899999999765 233333333322 22 2333 3555542 211122334588999999999999998876
Q ss_pred CCC------CCCchhHHHHHHHHHHcCCchhHHHHHH
Q 038510 292 GDC------IENGELKSVATEIVKECAGLPIAIVPVA 322 (871)
Q Consensus 292 ~~~------~~~~~l~~~~~~I~~~c~GlPLai~~~~ 322 (871)
... ....--.+..+.|++.++|.+-.+.-+-
T Consensus 179 ~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 179 EDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 431 1111224567788888999886554433
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=9.1e-06 Score=83.75 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=97.2
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--------c---cc
Q 038510 150 FMHFESRKSTFKEILDALS---N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--------K---SH 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~---~~ 206 (871)
...++|.+..++++.+++. . ...+-+.|+|++|+|||++|+.+++..... |- . ..
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP--FLAMAGAEFVEVIGGL 82 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC--EEEEETTTTSSSSTTH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEechHHHHhhccCh
Confidence 4457788877776655442 1 234568899999999999999999876532 22 0 01
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCcc--------------C---hhhhccccCC--CCCCcEEEEeecCcchh-ccc
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGL--------------D---LEAIGIPLAD--DNSGCKVLLTARSQDVL-SCK 266 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------------~---~~~l~~~l~~--~~~gs~iivTtr~~~va-~~~ 266 (871)
.......+.+........+|+|||++... . ...+...+.. ...+..||.||...... ...
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l 162 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL 162 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGG
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHH
Confidence 11223344444444567999999997541 1 1112111111 12345566677654321 111
Q ss_pred c---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHH
Q 038510 267 M---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPV 321 (871)
Q Consensus 267 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 321 (871)
. .-...+.++..+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus 163 ~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp GSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred hcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 1 2335788999999999999988764322222222335778888888754 44333
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=1.5e-05 Score=87.71 Aligned_cols=304 Identities=15% Similarity=0.143 Sum_probs=142.0
Q ss_pred CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccE
Q 038510 493 FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEI 569 (871)
Q Consensus 493 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~ 569 (871)
.+|.+|+++.+.. ....+....|.++..|+.+++..+ ++.++ ..+.++..|+.+.+..+ +.. ...+.++..+..
T Consensus 68 ~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 68 QGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred hCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 3678888888754 355677777888888888888643 44443 34556666666555432 111 112222222211
Q ss_pred EEeeCCCccccc-hhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccC
Q 038510 570 LSLRGSDVEKLV-GEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHL 648 (871)
Q Consensus 570 L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L 648 (871)
... ..+..+. ..+.++.+|+.+.+.. .+..++.+.+..+++|+.+.+..+.... .-..+.++
T Consensus 145 ~~~--~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~~~~I-------------~~~~F~~~ 207 (394)
T 4fs7_A 145 TIP--EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRNLKII-------------RDYCFAEC 207 (394)
T ss_dssp ECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTTCCEE-------------CTTTTTTC
T ss_pred ccC--ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCCceEe-------------Cchhhccc
Confidence 111 1122222 2245555566665543 2344555545555555555543321100 00112223
Q ss_pred CCCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeec
Q 038510 649 SKLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHG 728 (871)
Q Consensus 649 ~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 728 (871)
..|+.+.+.... ..+........+|+.+.+......-....+.....+..+.+..+. ...+......+.+++.+....
T Consensus 208 ~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 208 ILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp TTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECS
T ss_pred cccceeecCCCc-eEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccccceeccCc
Confidence 333332221110 000111112233443333111000001111122333333333222 122222233345555555432
Q ss_pred cCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEE
Q 038510 729 LLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIR 808 (871)
Q Consensus 729 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~ 808 (871)
. .++ ......+.+|+.+.+.+ +++.+... ....+.+|+.+.|.+ +++.+....|. .+.+|+.+.
T Consensus 286 ~----~i~-~~~F~~~~~L~~i~l~~--~i~~I~~~-----aF~~c~~L~~i~lp~--~v~~I~~~aF~--~c~~L~~i~ 349 (394)
T 4fs7_A 286 V----IVP-EKTFYGCSSLTEVKLLD--SVKFIGEE-----AFESCTSLVSIDLPY--LVEEIGKRSFR--GCTSLSNIN 349 (394)
T ss_dssp S----EEC-TTTTTTCTTCCEEEECT--TCCEECTT-----TTTTCTTCCEECCCT--TCCEECTTTTT--TCTTCCEEC
T ss_pred e----eec-ccccccccccccccccc--ccceechh-----hhcCCCCCCEEEeCC--cccEEhHHhcc--CCCCCCEEE
Confidence 1 111 11235678888888864 35555221 334567888888853 46666444443 467888888
Q ss_pred EecCCCCCccCChhhhccCCcccEEEecc
Q 038510 809 VQRCDKLKNVFPLLIGRGLQQLQSIEVTK 837 (871)
Q Consensus 809 l~~C~~L~~l~~~~~~~~l~~L~~L~i~~ 837 (871)
+.. +++.+... .+.+|++|+++++..
T Consensus 350 lp~--~l~~I~~~-aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 350 FPL--SLRKIGAN-AFQGCINLKKVELPK 375 (394)
T ss_dssp CCT--TCCEECTT-TBTTCTTCCEEEEEG
T ss_pred ECc--cccEehHH-HhhCCCCCCEEEECC
Confidence 754 47777553 458899999998853
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.35 E-value=1.5e-05 Score=87.53 Aligned_cols=318 Identities=16% Similarity=0.123 Sum_probs=181.1
Q ss_pred cccceeecccCCcCcCCCC--CCCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEe
Q 038510 474 KVCTAISLIYSNISELPQG--FECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCL 550 (871)
Q Consensus 474 ~~~~~lsl~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L 550 (871)
.+++.+.+. +.+..+... .+|++|+++.+..+ ...++...|.++..|+.+.+..+ +..+. ..+.++..+.....
T Consensus 71 ~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 345666665 345555443 37899999998653 56677888999999988776543 23222 33444443333322
Q ss_pred cccCCCCCcccCCCCCccEEEeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccc
Q 038510 551 NYCNLGDIAIIGDLKKLEILSLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGT 629 (871)
Q Consensus 551 ~~~~i~~~~~i~~l~~L~~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 629 (871)
.....-....+.++.+|+.+.+..+ +..++. .+.++.+|+.+.+.. .++.++...+..+..|+.+.+..+.....
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~~~~i~- 223 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNSLYYLG- 223 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTTCCEEC-
T ss_pred ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCCceEee-
Confidence 2221111345778999999999754 455654 477889999998876 46777777788888888887655432111
Q ss_pred cccccchhcccchhhhccCCCCCeEEEeeccCCCCC-cchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcc
Q 038510 630 VEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIP-SDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANI 708 (871)
Q Consensus 630 ~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 708 (871)
...-...+|+.+.+... ...+. ..+..+..|+.+.+..+........+.....+..+.....
T Consensus 224 -------------~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~--- 286 (394)
T 4fs7_A 224 -------------DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSV--- 286 (394)
T ss_dssp -------------TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSS---
T ss_pred -------------hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCce---
Confidence 01122346666665422 11122 1223455666665532211111112222233333333221
Q ss_pred cchhhHHhhhcccceEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccc
Q 038510 709 CLNEGHIMQLKGIEDLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNL 788 (871)
Q Consensus 709 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l 788 (871)
..+......+.+|+.+.+.. .++.+... ...++.+|+.+.|.+ +++.+... ....+.+|+.+.|.. ++
T Consensus 287 ~i~~~~F~~~~~L~~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~-----aF~~c~~L~~i~lp~--~l 354 (394)
T 4fs7_A 287 IVPEKTFYGCSSLTEVKLLD--SVKFIGEE-AFESCTSLVSIDLPY--LVEEIGKR-----SFRGCTSLSNINFPL--SL 354 (394)
T ss_dssp EECTTTTTTCTTCCEEEECT--TCCEECTT-TTTTCTTCCEECCCT--TCCEECTT-----TTTTCTTCCEECCCT--TC
T ss_pred eecccccccccccccccccc--ccceechh-hhcCCCCCCEEEeCC--cccEEhHH-----hccCCCCCCEEEECc--cc
Confidence 23444445567899888864 24443322 246789999999864 46666322 334567899988864 36
Q ss_pred cccccccCCccccCCCCeEEEecCCCCCccCChhhhccCCcccEE
Q 038510 789 EKICRGSLTAESFCKLKNIRVQRCDKLKNVFPLLIGRGLQQLQSI 833 (871)
Q Consensus 789 ~~l~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L 833 (871)
+.+....|. .+++|+++.+.. .++.. .. ...++++|+.+
T Consensus 355 ~~I~~~aF~--~C~~L~~i~lp~--~~~~~-~~-~F~~c~~L~~I 393 (394)
T 4fs7_A 355 RKIGANAFQ--GCINLKKVELPK--RLEQY-RY-DFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTBT--TCTTCCEEEEEG--GGGGG-GG-GBCTTCEEEEE
T ss_pred cEehHHHhh--CCCCCCEEEECC--CCEEh-hh-eecCCCCCcEE
Confidence 666544443 578899998865 24443 11 23566666654
No 172
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.31 E-value=5e-06 Score=86.27 Aligned_cols=183 Identities=16% Similarity=0.153 Sum_probs=101.3
Q ss_pred ccccchHHHHHHHH-------Hhc---CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---c------cchh---h
Q 038510 152 HFESRKSTFKEILD-------ALS---NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---K------SHET---V 209 (871)
Q Consensus 152 ~~~gr~~~~~~l~~-------~l~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~------~~~~---~ 209 (871)
.++|+....++++. .+. ....+.+.|+|++|+|||++|+.+++.... .|- . .... .
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~--~~~~i~~~~~~~g~~~~~~~~ 111 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF--PFIKICSPDKMIGFSETAKCQ 111 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC--SEEEEECGGGCTTCCHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC--CEEEEeCHHHhcCCchHHHHH
Confidence 35566555444444 332 345678899999999999999999987543 232 0 0111 1
Q ss_pred HHHHHHHHHHcCCcEEEEEecCCCc-----------cC-hhhhccccC---CCCCCcEEEEeecCcchhcc---ccCCcc
Q 038510 210 RAGRLLERLKKEKKILIILDDIWGG-----------LD-LEAIGIPLA---DDNSGCKVLLTARSQDVLSC---KMDCQQ 271 (871)
Q Consensus 210 ~~~~l~~~l~~~kr~LlvlDdv~~~-----------~~-~~~l~~~l~---~~~~gs~iivTtr~~~va~~---~~~~~~ 271 (871)
....+.......+..+|+|||+... .. .+.+...+. ..+....||.||........ ...-..
T Consensus 112 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~ 191 (272)
T 1d2n_A 112 AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFST 191 (272)
T ss_dssp HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSE
T ss_pred HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccce
Confidence 2233334333356899999998642 01 122222111 12233446667776533211 112245
Q ss_pred eeeccCCCH-HHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC------chhHHHHHHHHHhcCChhHHHHHHHHhcC
Q 038510 272 NFFVDVLNE-KEAWSLFRKMTGDCIENGELKSVATEIVKECAG------LPIAIVPVARALINKRLFEWKDSLLELRR 342 (871)
Q Consensus 272 ~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G------lPLai~~~~~~l~~~~~~~w~~~~~~l~~ 342 (871)
.+.+++++. ++..+++.+... . ..+....|++.+.| ++-++..+-.+-.......|..+++.+..
T Consensus 192 ~i~~p~l~~r~~i~~i~~~~~~--~----~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 192 TIHVPNIATGEQLLEALELLGN--F----KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLRE 263 (272)
T ss_dssp EEECCCEEEHHHHHHHHHHHTC--S----CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred EEcCCCccHHHHHHHHHHhcCC--C----CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 788999988 666666655321 1 13457788888888 34444444333333355677777766543
No 173
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.29 E-value=2.3e-05 Score=83.30 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=105.2
Q ss_pred CCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------
Q 038510 148 QDFMHFESRKSTFKEILDALS------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK----------- 204 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~----------- 204 (871)
.....++|.+..++++.+++. ....+-+.++|++|+|||++|+.+++.... .|-.
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--~~~~v~~~~l~~~~~ 92 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--TFFSVSSSDLVSKWM 92 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC--EEEEEEHHHHHTTTG
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC--CEEEEchHHHhhccc
Confidence 345678899999999888772 112357899999999999999999987643 2331
Q ss_pred cchhhHHHHHHHHHHcCCcEEEEEecCCCccC-------------hhhhcccc---CCCCCCcEEEEeecCcchhc--cc
Q 038510 205 SHETVRAGRLLERLKKEKKILIILDDIWGGLD-------------LEAIGIPL---ADDNSGCKVLLTARSQDVLS--CK 266 (871)
Q Consensus 205 ~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~-------------~~~l~~~l---~~~~~gs~iivTtr~~~va~--~~ 266 (871)
.........+.......++.+|+||++..... ...+...+ .....+..||.||....... ..
T Consensus 93 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~ 172 (322)
T 3eie_A 93 GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172 (322)
T ss_dssp GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHH
Confidence 11122334444555555778999999975411 12221111 12334555666776543221 01
Q ss_pred cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHHH
Q 038510 267 MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVPV 321 (871)
Q Consensus 267 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 321 (871)
..-...+.++..+.++-.+++...+......- -......|++.+.|. +-.|..+
T Consensus 173 ~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 173 RRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHH
T ss_pred cccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 13345778889999999999998876433211 134567888888884 4344433
No 174
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.27 E-value=1.2e-07 Score=103.05 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=93.6
Q ss_pred CCCceEEEecCCCCCccCcccc-----cCCCcceEEEecCCCCCC--CCCccccccCCcEEEecccCCCC--Cccc----
Q 038510 495 CPQLKYFRIGNDPSLRIPDNFF-----TGMTGLKVLDFTEMHLLP--LPSSLGLLQNLQTLCLNYCNLGD--IAII---- 561 (871)
Q Consensus 495 ~~~L~~L~l~~~~~~~~~~~~~-----~~l~~Lr~L~l~~~~i~~--lp~~i~~l~~Lr~L~L~~~~i~~--~~~i---- 561 (871)
.++|+.|+++++.........+ .....|++|+|++|.++. ...-...+.+|++|+|++|.+++ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3567777777765543222111 123577788887777652 11222345677788888877755 2222
Q ss_pred -CCCCCccEEEeeCCCccc-----cchhhcCCCCCCEEeCCCCCCCCccC----hhhhhCCCCCcEEecccCCCCccccc
Q 038510 562 -GDLKKLEILSLRGSDVEK-----LVGEMGQLTQLRLLDLSKCFELKVIP----PNVISSLSRLEELYIGESPIQWGTVE 631 (871)
Q Consensus 562 -~~l~~L~~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~~p----~~~i~~L~~L~~L~l~~~~~~~~~~~ 631 (871)
...++|++|++++|.++. ++..+..+++|++|++++| .++... ...+...++|++|++++|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH--
Confidence 345677888888777653 4455567777888888776 344321 112456677888888777653211
Q ss_pred cccchhcccchhhhccCCCCCeEEEeeccCC
Q 038510 632 GLDSERRNASLHELNHLSKLTSLEILIQDEK 662 (871)
Q Consensus 632 ~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~ 662 (871)
.......+...++|+.|+++.+.+.
T Consensus 228 ------~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ------ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ------HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ------HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 1123345666677778877766554
No 175
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.27 E-value=6e-06 Score=88.75 Aligned_cols=171 Identities=17% Similarity=0.174 Sum_probs=104.2
Q ss_pred CccccccchHHHHHHHHHhc-----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc--cchhhHHHHHHHHHH-c
Q 038510 149 DFMHFESRKSTFKEILDALS-----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK--SHETVRAGRLLERLK-K 220 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~~~~~~~~l~~~l~-~ 220 (871)
....++|++..++++..++. ....+.+.|+|++|+|||++|+.+++.... .|.. .........+...+. .
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 104 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA--NIKTTAAPMIEKSGDLAAILTNL 104 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC--CEEEEEGGGCCSHHHHHHHHHTC
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--CeEEecchhccchhHHHHHHHhc
Confidence 45678999999998888876 234567899999999999999999877543 2431 111111222223332 2
Q ss_pred CCcEEEEEecCCCcc--ChhhhccccCC------------------CCCCcEEEEeecCcchh--ccccCCcceeeccCC
Q 038510 221 EKKILIILDDIWGGL--DLEAIGIPLAD------------------DNSGCKVLLTARSQDVL--SCKMDCQQNFFVDVL 278 (871)
Q Consensus 221 ~kr~LlvlDdv~~~~--~~~~l~~~l~~------------------~~~gs~iivTtr~~~va--~~~~~~~~~~~l~~L 278 (871)
.+..+|+||++.... ....+...+.. ..++.++|.||...... .........+.++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 466899999997652 11222111111 11134566666553321 111223468999999
Q ss_pred CHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHHH
Q 038510 279 NEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPVA 322 (871)
Q Consensus 279 ~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 322 (871)
+.++...++...+.... ..--.+..+.|++.+.|.|-.+..+.
T Consensus 185 ~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 185 KDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999987764221 11224567788899999995554433
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.26 E-value=2.8e-05 Score=82.55 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=103.5
Q ss_pred CccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------cc
Q 038510 149 DFMHFESRKSTFKEILDALS------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KS 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~ 205 (871)
....+.|.++.++.+.+.+. ....+-|.++|++|+|||+||+.+++..... .|- ..
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-~~~~i~~~~l~~~~~g 88 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS-TFFSISSSDLVSKWLG 88 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC-EEEEEECCSSCCSSCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC-cEEEEEhHHHHhhhhh
Confidence 34567788888888777653 1223678999999999999999999876322 232 01
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCccC---------h----hhhccccC---CCCCCcEEEEeecCcchh--cccc
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGLD---------L----EAIGIPLA---DDNSGCKVLLTARSQDVL--SCKM 267 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~---------~----~~l~~~l~---~~~~gs~iivTtr~~~va--~~~~ 267 (871)
........+.+.....++.+|+||++..... . ..+...+. ....+..||.||...... ....
T Consensus 89 ~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r 168 (322)
T 1xwi_A 89 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 168 (322)
T ss_dssp SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh
Confidence 1223344555555556789999999975410 0 11111111 122344555566544322 1112
Q ss_pred CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch-hHHHHHH
Q 038510 268 DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP-IAIVPVA 322 (871)
Q Consensus 268 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~ 322 (871)
.....+.++..+.++-.+++...+......- -....+.|++.+.|.. -.|..+.
T Consensus 169 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 169 RFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3346788999999999999988775432211 1345678899998874 3454443
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.25 E-value=3.1e-06 Score=91.67 Aligned_cols=173 Identities=11% Similarity=0.101 Sum_probs=105.7
Q ss_pred CccccccchHHHHHHHHHh-cCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---------------------------
Q 038510 149 DFMHFESRKSTFKEILDAL-SNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------------- 200 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------------- 200 (871)
....++|++...+.+.+++ ..+..+.+.|+|+.|+||||+|+.++...-...
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 3456889999999999988 665555599999999999999999988531100
Q ss_pred -ccc--ccc----hhhHHHHHHHHHHc--------------CCcEEEEEecCCCcc--ChhhhccccCCCCCCcEEEEee
Q 038510 201 -LFE--KSH----ETVRAGRLLERLKK--------------EKKILIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTA 257 (871)
Q Consensus 201 -~F~--~~~----~~~~~~~l~~~l~~--------------~kr~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTt 257 (871)
++. ... .......+.+.+.. +++-++|+|++...+ ..+.+...+.....+.++|++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t 171 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVC 171 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 000 000 00012233333211 245699999997642 2233333332223456777777
Q ss_pred cCcc-hhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchh-HHHHHHHHHHcCCchhHHHHHH
Q 038510 258 RSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGEL-KSVATEIVKECAGLPIAIVPVA 322 (871)
Q Consensus 258 r~~~-va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l-~~~~~~I~~~c~GlPLai~~~~ 322 (871)
.... +..........+++++++.++..+.+...+..... .-- .+..+.|++.++|.+-.+..+.
T Consensus 172 ~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 172 DSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp SCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 6633 32212233478999999999999999887642111 111 2457789999999986555444
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.24 E-value=2.1e-05 Score=84.96 Aligned_cols=172 Identities=12% Similarity=0.125 Sum_probs=102.8
Q ss_pred CccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---------c--c
Q 038510 149 DFMHFESRKSTFKEILDALS------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---------K--S 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------~--~ 205 (871)
....++|.+..++++.+++. ....+.|.|+|++|+|||++|+.+++.... .|- . .
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~--~~~~i~~~~l~~~~~g 159 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA--TFFSISASSLTSKWVG 159 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC--EEEEEEGGGGCCSSTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC--eEEEEehHHhhccccc
Confidence 34568899999888888763 123567899999999999999999987643 232 0 0
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc-------------ChhhhccccC----CCCCCcEEEEeecCcchh--ccc
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL-------------DLEAIGIPLA----DDNSGCKVLLTARSQDVL--SCK 266 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~-------------~~~~l~~~l~----~~~~gs~iivTtr~~~va--~~~ 266 (871)
........+.......++.+|+||++.... ....+...+. ....+..||.||...... ...
T Consensus 160 ~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~ 239 (357)
T 3d8b_A 160 EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAAR 239 (357)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHH
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHH
Confidence 112223344444444577999999995320 1112222221 112344566666553221 111
Q ss_pred cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHHH
Q 038510 267 MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVPVAR 323 (871)
Q Consensus 267 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~~ 323 (871)
......+.+...+.++-.+++...+...... -..+..+.|++.+.|. |-++..+..
T Consensus 240 ~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 240 RRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2333577889999999999988776432111 1134677889999884 555555544
No 179
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.22 E-value=2e-06 Score=87.37 Aligned_cols=168 Identities=16% Similarity=0.106 Sum_probs=97.6
Q ss_pred cccccc---hHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-ccc---ccchhhHHHHHHHHHHcCCc
Q 038510 151 MHFESR---KSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFE---KSHETVRAGRLLERLKKEKK 223 (871)
Q Consensus 151 ~~~~gr---~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~---~~~~~~~~~~l~~~l~~~kr 223 (871)
..|+++ +..++.+..+...+..+.+.|+|++|+||||+|+.+++...... .+. ............+.+ .++
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 105 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGL--EQF 105 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTG--GGS
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhc--cCC
Confidence 445542 45666777766655678899999999999999999998776431 111 111011111111122 245
Q ss_pred EEEEEecCCCccC----hhhhccccCC-CCCC-cEEEEeecCcch------hc--cccCCcceeeccCCCHHHHHHHHHH
Q 038510 224 ILIILDDIWGGLD----LEAIGIPLAD-DNSG-CKVLLTARSQDV------LS--CKMDCQQNFFVDVLNEKEAWSLFRK 289 (871)
Q Consensus 224 ~LlvlDdv~~~~~----~~~l~~~l~~-~~~g-s~iivTtr~~~v------a~--~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (871)
.+||+||++.... .+.+...+.. ...+ .++|+||+...- .. ........+.+++++.++..+++..
T Consensus 106 ~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~ 185 (242)
T 3bos_A 106 DLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQR 185 (242)
T ss_dssp SEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHH
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHH
Confidence 7899999976522 2222222110 0112 257887775321 00 0111226899999999999999988
Q ss_pred HhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 290 MTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 290 ~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
.+..... .--.++.+.|++.++|.+-.+..+
T Consensus 186 ~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 186 RAAMRGL-QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHcCC-CCCHHHHHHHHHHccCCHHHHHHH
Confidence 7642111 112456778999999988665544
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.20 E-value=7.9e-06 Score=92.92 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=107.6
Q ss_pred CCccccccchHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---cc--
Q 038510 148 QDFMHFESRKSTFKEILDALSN-----------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---KS-- 205 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~-- 205 (871)
.....++|++..++++.+|+.. +..+.+.|+|++|+||||+|+.+++..... |- ..
T Consensus 36 ~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~--~i~in~s~~ 113 (516)
T 1sxj_A 36 TNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDV 113 (516)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSC
T ss_pred CCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC--EEEEeCCCc
Confidence 3456789999999999999874 134789999999999999999999876321 21 00
Q ss_pred chhhHHHHHH-------------HHH-----HcCCcEEEEEecCCCccC-----hhhhccccCCCCCCcEEEEeecCcch
Q 038510 206 HETVRAGRLL-------------ERL-----KKEKKILIILDDIWGGLD-----LEAIGIPLADDNSGCKVLLTARSQDV 262 (871)
Q Consensus 206 ~~~~~~~~l~-------------~~l-----~~~kr~LlvlDdv~~~~~-----~~~l~~~l~~~~~gs~iivTtr~~~v 262 (871)
.......... ... ..+++.+||+|++..... +..+...+.. .+.+||+++.....
T Consensus 114 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~ 191 (516)
T 1sxj_A 114 RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNL 191 (516)
T ss_dssp CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTS
T ss_pred chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCC
Confidence 0000111000 000 124678999999975422 1233222211 23346655554321
Q ss_pred h--ccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHHHHHhc-C--ChhHHHHH
Q 038510 263 L--SCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVPVARALIN-K--RLFEWKDS 336 (871)
Q Consensus 263 a--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~~~l~~-~--~~~~w~~~ 336 (871)
. .........+.+++++.++..+.+...+...... --.++...|++.++|. +-|+..+..+..+ + +.+.-..+
T Consensus 192 ~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~ 270 (516)
T 1sxj_A 192 PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENINEI 270 (516)
T ss_dssp STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHH
T ss_pred ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 1 1122334578999999999999988766421110 0123467889999994 5556555443322 1 44444444
Q ss_pred HH
Q 038510 337 LL 338 (871)
Q Consensus 337 ~~ 338 (871)
+.
T Consensus 271 ~~ 272 (516)
T 1sxj_A 271 SK 272 (516)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 181
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.14 E-value=4.7e-05 Score=81.99 Aligned_cols=170 Identities=16% Similarity=0.189 Sum_probs=102.0
Q ss_pred ccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cc
Q 038510 150 FMHFESRKSTFKEILDALS------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SH 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~ 206 (871)
...++|.+..++.+.+++. ....+-|.++|++|+|||+||+.+++.... .|-. ..
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--~~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--TFFSVSSSDLVSKWMGE 127 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC--EEEEEEHHHHHSCC---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEEEeeHHHHhhhhcch
Confidence 4568899988888887762 112345889999999999999999998753 2321 01
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCccC-------------hhhhccccC---CCCCCcEEEEeecCcchh--ccccC
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGLD-------------LEAIGIPLA---DDNSGCKVLLTARSQDVL--SCKMD 268 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~-------------~~~l~~~l~---~~~~gs~iivTtr~~~va--~~~~~ 268 (871)
.......+.......++.+|+||++..... ...+...+. ....+..||.||...... .....
T Consensus 128 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR 207 (355)
T 2qp9_X 128 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR 207 (355)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc
Confidence 122334444444445789999999975421 112211111 123345566666554321 11123
Q ss_pred CcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHHHH
Q 038510 269 CQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVPVA 322 (871)
Q Consensus 269 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~ 322 (871)
....+.+...+.++-.+++...+......- -......|++.+.|. |-.|..+.
T Consensus 208 f~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 208 FERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 446788999999999999988876432111 134567888999885 44444443
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.8e-05 Score=81.29 Aligned_cols=141 Identities=11% Similarity=0.118 Sum_probs=85.0
Q ss_pred ccccchHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc------ccc-------c-cch------
Q 038510 152 HFESRKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN------LFE-------K-SHE------ 207 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------~F~-------~-~~~------ 207 (871)
.+.||+++.+++...|. .+..+.+.|+|++|+|||++|+.|++...... .|. . .+.
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987775 56678899999999999999999999885421 233 0 000
Q ss_pred ---------------hhHHHHHHHHH--HcCCcEEEEEecCCCccChhhhccccCC-CCCCcE--EEEeecCcchhc---
Q 038510 208 ---------------TVRAGRLLERL--KKEKKILIILDDIWGGLDLEAIGIPLAD-DNSGCK--VLLTARSQDVLS--- 264 (871)
Q Consensus 208 ---------------~~~~~~l~~~l--~~~kr~LlvlDdv~~~~~~~~l~~~l~~-~~~gs~--iivTtr~~~va~--- 264 (871)
......+...+ ..++++++|||++.....-+.+...+.. ....++ ||.++...+...
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHH
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhc
Confidence 01122222222 1356799999999776432222222110 112232 333343322210
Q ss_pred --cc-cC-CcceeeccCCCHHHHHHHHHHHhC
Q 038510 265 --CK-MD-CQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 265 --~~-~~-~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
.. .. ....+.+++++.++-.+++..++.
T Consensus 181 ~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 00 01 125789999999999999988763
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=9.1e-07 Score=83.57 Aligned_cols=92 Identities=9% Similarity=0.179 Sum_probs=56.8
Q ss_pred CccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCcc--ccCCCCeEEEecCCCCCccCChhh
Q 038510 746 QLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAE--SFCKLKNIRVQRCDKLKNVFPLLI 823 (871)
Q Consensus 746 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~--~~~~L~~L~l~~C~~L~~l~~~~~ 823 (871)
+|+.|++++|. +... . ......+++|+.|+|++|..+++..-..+... ..++|++|+|++|+++++-.- ..
T Consensus 62 ~L~~LDLs~~~-Itd~----G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI----G-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IA 134 (176)
T ss_dssp CEEEEEEESCC-CCGG----G-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HH
T ss_pred eEeEEeCcCCC-ccHH----H-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HH
Confidence 56666666664 3221 1 11234567777777777766655421111111 135789999999988887533 33
Q ss_pred hccCCcccEEEeccCcchHhH
Q 038510 824 GRGLQQLQSIEVTKCQNMEVI 844 (871)
Q Consensus 824 ~~~l~~L~~L~i~~C~~l~~i 844 (871)
+.++++|++|++++|+++++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCCH
T ss_pred HhcCCCCCEEECCCCCCCCch
Confidence 467888999999999888764
No 184
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.10 E-value=1.3e-05 Score=85.38 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=100.4
Q ss_pred CCccccccchHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhccccc---c-cchhhHHHHHHHH-HHc-
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---K-SHETVRAGRLLER-LKK- 220 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-~~~~~~~~~l~~~-l~~- 220 (871)
.....++|+++.++.+.+++..+.. .++.+.|++|+|||++|+.+++..... |- . ............. ...
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~--~~~i~~~~~~~~~i~~~~~~~~~~~ 100 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD--MMFVNGSDCKIDFVRGPLTNFASAA 100 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE--EEEEETTTCCHHHHHTHHHHHHHBC
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC--EEEEcccccCHHHHHHHHHHHHhhc
Confidence 3456788999999999999986554 567778889999999999999876432 22 1 1112222222222 221
Q ss_pred ---CCcEEEEEecCCCcc---ChhhhccccCCCCCCcEEEEeecCcc-hhccccCCcceeeccCCCHHHHHHHHHH----
Q 038510 221 ---EKKILIILDDIWGGL---DLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFRK---- 289 (871)
Q Consensus 221 ---~kr~LlvlDdv~~~~---~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~~l~~L~~~~~~~Lf~~---- 289 (871)
+++.++|+||+.... ..+.+...+.....+.++|+||.... +..........+++++++.++-.+++..
T Consensus 101 ~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 180 (324)
T 3u61_B 101 SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRR 180 (324)
T ss_dssp CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 267899999997653 23333332222224567777776643 2111112235799999998885443322
Q ss_pred ---HhCCCCCCchhHHHHHHHHHHcCCchhHHHH
Q 038510 290 ---MTGDCIENGELKSVATEIVKECAGLPIAIVP 320 (871)
Q Consensus 290 ---~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 320 (871)
.+......-.-.++.+.|++.++|.+-.+..
T Consensus 181 l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 181 LTEICKHEGIAIADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp HHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHH
Confidence 2221111111025677888999888764433
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.10 E-value=6.9e-05 Score=81.96 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=102.2
Q ss_pred CCccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------
Q 038510 148 QDFMHFESRKSTFKEILDALS------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK----------- 204 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~----------- 204 (871)
.....++|.+..++.+.+++. ....+-+.|+|++|+|||++|+.+++.... .|-.
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~--~~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA--TFFNISAASLTSKYV 189 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC--EEEEECSCCC-----
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC--cEEEeeHHHhhcccc
Confidence 345678899999999988773 122468899999999999999999887543 2320
Q ss_pred cchhhHHHHHHHHHHcCCcEEEEEecCCCcc--------C-----hhhhcccc---CC-CCCCcEEEEeecCcchh-c-c
Q 038510 205 SHETVRAGRLLERLKKEKKILIILDDIWGGL--------D-----LEAIGIPL---AD-DNSGCKVLLTARSQDVL-S-C 265 (871)
Q Consensus 205 ~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~-----~~~l~~~l---~~-~~~gs~iivTtr~~~va-~-~ 265 (871)
.........+.......+..+|+||++.... . ...+...+ .. ......||.||...... . .
T Consensus 190 g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l 269 (389)
T 3vfd_A 190 GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAV 269 (389)
T ss_dssp --CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHH
Confidence 0112223444444444566899999996430 0 11111111 11 12234456566553221 1 1
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHHH
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPVA 322 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 322 (871)
.......+.+...+.++-.+++...+...... -..+....|++.+.|..- +|..+.
T Consensus 270 ~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 270 LRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 11233568899999999999998887543221 123456789999988654 554443
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.10 E-value=8e-05 Score=78.20 Aligned_cols=171 Identities=13% Similarity=0.137 Sum_probs=101.1
Q ss_pred CccccccchHHHHHHHHHhcC------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------cc
Q 038510 149 DFMHFESRKSTFKEILDALSN------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KS 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~ 205 (871)
....++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.... .|- ..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~~ 96 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA--TFLNISAASLTSKYVG 96 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC--EEEEEESTTTSSSSCS
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC--CeEEeeHHHHhhcccc
Confidence 345688999999888887631 23468899999999999999999987643 232 01
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCccC---------hh----hhc---cccCCC--CCCcEEEEeecCcchh-c-c
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGLD---------LE----AIG---IPLADD--NSGCKVLLTARSQDVL-S-C 265 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~---------~~----~l~---~~l~~~--~~gs~iivTtr~~~va-~-~ 265 (871)
........+.......++.+|++|++..... -. .+. ..++.. +.+..||.||...... . .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 1122333444444445778999999965311 00 111 111111 2334566677654321 1 0
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchh-HHHHHH
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPI-AIVPVA 322 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~ 322 (871)
.......+.+...+.++-..++...+...... -..+..+.|++.+.|.+- ++..+.
T Consensus 177 ~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 177 LRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 11233567788888888888887766432111 113456788899999875 444443
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.09 E-value=8.2e-06 Score=86.42 Aligned_cols=141 Identities=13% Similarity=0.115 Sum_probs=83.7
Q ss_pred ccccchHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc-----cccc-------
Q 038510 152 HFESRKSTFKEILDALS---------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN-----LFEK------- 204 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----~F~~------- 204 (871)
.++|.+..++.+.+++. ......+.|+|++|+|||++|+.+++...... .|-.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 36777777777765543 23345789999999999999999988765421 1210
Q ss_pred -cchhhHHHHHHHHHHcCCcEEEEEecCCCc-----------cChhhhccccCCCCCCcEEEEeecCcch-------hcc
Q 038510 205 -SHETVRAGRLLERLKKEKKILIILDDIWGG-----------LDLEAIGIPLADDNSGCKVLLTARSQDV-------LSC 265 (871)
Q Consensus 205 -~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iivTtr~~~v-------a~~ 265 (871)
.........+...+...+.-+|+||++... .....+...+.....+..||.||..... ...
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 000011122223332224469999999743 2223333333334455677777754321 010
Q ss_pred ccCCcceeeccCCCHHHHHHHHHHHhC
Q 038510 266 KMDCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 266 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
.......+.+++++.++-.+++...+.
T Consensus 192 ~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 192 RSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 112236899999999999999887764
No 188
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.07 E-value=4.4e-06 Score=89.94 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=78.4
Q ss_pred ccccCCCcceEEEecCCCCCCCCCccccccCCcEEEecccCCCC--CcccC--CCCCccEEEeeCC--C------ccccc
Q 038510 514 NFFTGMTGLKVLDFTEMHLLPLPSSLGLLQNLQTLCLNYCNLGD--IAIIG--DLKKLEILSLRGS--D------VEKLV 581 (871)
Q Consensus 514 ~~~~~l~~Lr~L~l~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~--~~~i~--~l~~L~~L~l~~~--~------i~~lp 581 (871)
.++..++.|+.|.++++.-..++. + .+++|++|+|..|.+.. +..++ .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345667788888887764234444 3 37788888888777654 33343 6788888887532 1 22222
Q ss_pred hhh--cCCCCCCEEeCCCCCCCCccChhhh--hCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEe
Q 038510 582 GEM--GQLTQLRLLDLSKCFELKVIPPNVI--SSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEIL 657 (871)
Q Consensus 582 ~~i--~~L~~L~~L~l~~~~~l~~~p~~~i--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~ 657 (871)
..+ ..+++|++|++.+|......+.... +.+++|++|+++.|.+.... .......+.++++|+.|+++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G--------~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG--------ARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH--------HHHHHTTHHHHTTCSEEECC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH--------HHHHHhhcccCCcceEEECC
Confidence 222 3467888888877633222222211 24677888888776543211 01122334566778888776
Q ss_pred ecc
Q 038510 658 IQD 660 (871)
Q Consensus 658 ~~~ 660 (871)
.+.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 553
No 189
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.06 E-value=7.7e-05 Score=82.89 Aligned_cols=171 Identities=18% Similarity=0.236 Sum_probs=103.2
Q ss_pred CccccccchHHHHHHHHHhc------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---cc--------
Q 038510 149 DFMHFESRKSTFKEILDALS------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---KS-------- 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~-------- 205 (871)
....++|.+..++.+.+++. ....+-|.++|++|+|||+||+.+++..... .|- ..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~-~~~~v~~~~l~~~~~g 210 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS-TFFSISSSDLVSKWLG 210 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS-EEEEECCC--------
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC-CEEEEeHHHHHhhhcc
Confidence 34568899998888887763 1234678999999999999999999876221 232 00
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc---------C----hhhhccccCC---CCCCcEEEEeecCcchh--cccc
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL---------D----LEAIGIPLAD---DNSGCKVLLTARSQDVL--SCKM 267 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~---------~----~~~l~~~l~~---~~~gs~iivTtr~~~va--~~~~ 267 (871)
........+.......++.+|+||++.... . ...+...+.. ...+..||.||...... ....
T Consensus 211 ~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r 290 (444)
T 2zan_A 211 ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290 (444)
T ss_dssp -CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh
Confidence 011223444454544578999999997541 0 1112222211 23445566677654322 1112
Q ss_pred CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHHH
Q 038510 268 DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVPV 321 (871)
Q Consensus 268 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 321 (871)
.....+.++..+.++-..+|...+...... --......|++.+.|. +-.|..+
T Consensus 291 Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 291 RFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp TCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 334578888889999999998887543211 1134567888999885 4344443
No 190
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.02 E-value=4e-05 Score=83.33 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=38.2
Q ss_pred ccccccchHHHHH---HHHHhcCCCc--eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 150 FMHFESRKSTFKE---ILDALSNRDF--NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 150 ~~~~~gr~~~~~~---l~~~l~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4578999888665 4555554443 58999999999999999999988753
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.02 E-value=1.1e-05 Score=78.03 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=42.4
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...++||+.+++++.+++.....+.+.|+|++|+|||++|+.+++...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456889999999999999876677889999999999999999998764
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=6.1e-05 Score=80.78 Aligned_cols=168 Identities=11% Similarity=0.082 Sum_probs=101.1
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---ccc---ccc--hhhHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LFE---KSH--ETVRAGRLLERLK 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~---~~~--~~~~~~~l~~~l~ 219 (871)
.....++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+++...... .|. ..+ ....+......+.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 33456779888899999888877766699999999999999999998754211 111 111 1112222222222
Q ss_pred -c-----CCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcc-hhccccCCcceeeccCCCHHHHHHHHHHH
Q 038510 220 -K-----EKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNFFVDVLNEKEAWSLFRKM 290 (871)
Q Consensus 220 -~-----~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 290 (871)
. +.+-++|+|++... ...+.+...+.......++|++|.... +..........+.+.+++.++..+.+...
T Consensus 102 ~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~ 181 (340)
T 1sxj_C 102 STRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANV 181 (340)
T ss_dssp HBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHH
T ss_pred hhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHH
Confidence 1 24678999998654 223333333322234556666665432 21111223457899999999988888776
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCchh
Q 038510 291 TGDCIENGELKSVATEIVKECAGLPI 316 (871)
Q Consensus 291 ~~~~~~~~~l~~~~~~I~~~c~GlPL 316 (871)
+...... --.+..+.|++.++|.+-
T Consensus 182 ~~~~~~~-i~~~~~~~i~~~s~G~~r 206 (340)
T 1sxj_C 182 LVHEKLK-LSPNAEKALIELSNGDMR 206 (340)
T ss_dssp HHTTTCC-BCHHHHHHHHHHHTTCHH
T ss_pred HHHcCCC-CCHHHHHHHHHHcCCCHH
Confidence 6321111 113456778888888775
No 193
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.98 E-value=3.6e-05 Score=85.36 Aligned_cols=187 Identities=16% Similarity=0.161 Sum_probs=104.6
Q ss_pred ccccc-cch--HHHHHHHHHhcCCC-ceEEEEEcCCCCcHhHHHHHHHHHHhhc---ccccccchhhHHH----------
Q 038510 150 FMHFE-SRK--STFKEILDALSNRD-FNMIGVYGMGGIGKTTLVKEVGRQAKEN---NLFEKSHETVRAG---------- 212 (871)
Q Consensus 150 ~~~~~-gr~--~~~~~l~~~l~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~~~~~~~---------- 212 (871)
+..|+ |.. .....+..+...+. ...+.|+|++|+||||||+.+++..... ..|-..+......
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~ 183 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGK 183 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTC
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHccc
Confidence 34455 432 23444444444333 6789999999999999999999876432 1111111111111
Q ss_pred --HHHHHHHcCCcEEEEEecCCCccC----hhhhccccCC-CCCCcEEEEeecCcch-----h---ccccCCcceeeccC
Q 038510 213 --RLLERLKKEKKILIILDDIWGGLD----LEAIGIPLAD-DNSGCKVLLTARSQDV-----L---SCKMDCQQNFFVDV 277 (871)
Q Consensus 213 --~l~~~l~~~kr~LlvlDdv~~~~~----~~~l~~~l~~-~~~gs~iivTtr~~~v-----a---~~~~~~~~~~~l~~ 277 (871)
.+.+.+. .+.-+|+|||++.... .+.+...+.. ...|..||+||....- . ......+..+.+++
T Consensus 184 ~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 184 LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 1222222 1567999999975532 2223222211 2346778888886321 1 11123346789999
Q ss_pred CCHHHHHHHHHHHhCC--CCCCchhHHHHHHHHHHcCCchhHHHHHHHHH------hcC--ChhHHHHHHHHh
Q 038510 278 LNEKEAWSLFRKMTGD--CIENGELKSVATEIVKECAGLPIAIVPVARAL------INK--RLFEWKDSLLEL 340 (871)
Q Consensus 278 L~~~~~~~Lf~~~~~~--~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l------~~~--~~~~w~~~~~~l 340 (871)
++.++-.+++.+.+.. ...+ .++...|++.++|.+-.+.-+-..+ .++ +.+.++.++...
T Consensus 263 p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 263 PDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999887641 1111 2356778899999885444332221 122 556666665543
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=4e-06 Score=90.31 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=30.7
Q ss_pred hhCCCCCcEEecccCCCCccccccccchhcccchhhhccCCCCCeEEEeeccCCCCCcchhhhccceeEEEE
Q 038510 609 ISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLSKLTSLEILIQDEKTIPSDLLFFKILKRYRIF 680 (871)
Q Consensus 609 i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~ 680 (871)
+.++++|+.|.+.+.......+... .......-+..+++|+.|.+.++....++. + ..++|++|.+.
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~---~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~ 201 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWI---EQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEII 201 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGC---BCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEE
T ss_pred hhhcchhhheeecCcchhhcccccc---cccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEe
Confidence 5678899999886543210000000 001111334556677777776542222222 2 24455555543
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.0001 Score=79.03 Aligned_cols=164 Identities=14% Similarity=0.161 Sum_probs=101.7
Q ss_pred CCccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------
Q 038510 148 QDFMHFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----------- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----------- 203 (871)
....++.|-++.+++|.+.+. -...+-|.++|++|+|||.||+++++..... |-
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK--FIRVSGAELVQKY 222 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE--EEEEEGGGGSCSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC--ceEEEhHHhhccc
Confidence 334567788888887776553 1234678899999999999999999987653 43
Q ss_pred ccchhhHHHHHHHHHHcCCcEEEEEecCCCcc----------C------hhhhccccC--CCCCCcEEEEeecCcchhcc
Q 038510 204 KSHETVRAGRLLERLKKEKKILIILDDIWGGL----------D------LEAIGIPLA--DDNSGCKVLLTARSQDVLSC 265 (871)
Q Consensus 204 ~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~----------~------~~~l~~~l~--~~~~gs~iivTtr~~~va~~ 265 (871)
.......+..+........+++|++|+++... + ...+...+. ....+-.||.||...+....
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDp 302 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCH
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCH
Confidence 01122344555555566688999999997531 0 111111111 12334456667766544311
Q ss_pred -c---cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 266 -K---MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 266 -~---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
. ..-+..+.++.-+.++-.++|+.+.......++.. ..+|++.+.|.-
T Consensus 303 AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred hHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 1 13456889999999999999988775432222111 356778888764
No 196
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.95 E-value=0.0001 Score=77.37 Aligned_cols=164 Identities=12% Similarity=0.198 Sum_probs=97.5
Q ss_pred ccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------
Q 038510 150 FMHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS----------- 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~----------- 205 (871)
...++|.+..++++.+++.. ...+.+.++|++|+|||+||+.+++.... .|-..
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~--~~i~v~~~~l~~~~~g 91 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISIKGPELLTMWFG 91 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--EEEEECHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC--CEEEEEhHHHHhhhcC
Confidence 45678888888777776531 34567899999999999999999987643 23211
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc------------C----hhhhccccC--CCCCCcEEEEeecCcchh-ccc
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL------------D----LEAIGIPLA--DDNSGCKVLLTARSQDVL-SCK 266 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~iivTtr~~~va-~~~ 266 (871)
........+.+......+.++++|++.... . ...+...+. ....+..||.||...... ...
T Consensus 92 ~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al 171 (301)
T 3cf0_A 92 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI 171 (301)
T ss_dssp TCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGG
T ss_pred chHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHH
Confidence 011223344444444567999999996421 0 122222121 122345677777654322 111
Q ss_pred c---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhH
Q 038510 267 M---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIA 317 (871)
Q Consensus 267 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 317 (871)
. .-...+.++..+.++-.+++...........+. -...+++.+.|.|-+
T Consensus 172 ~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 172 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred hcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 1 234578899999999999998877532211111 123566678887754
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.95 E-value=6.8e-05 Score=80.08 Aligned_cols=160 Identities=12% Similarity=0.121 Sum_probs=103.4
Q ss_pred chHHHHHHHHHhcCCCc-eEEEEEcCCCCcHhHHHHHHHHHHhhcc--------------------ccc-----cc----
Q 038510 156 RKSTFKEILDALSNRDF-NMIGVYGMGGIGKTTLVKEVGRQAKENN--------------------LFE-----KS---- 205 (871)
Q Consensus 156 r~~~~~~l~~~l~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~-----~~---- 205 (871)
.++..+.+.+.+..++. ..+.++|+.|+|||++|+.+.+...... |++ ..
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 45567778887776654 5689999999999999999988754211 222 11
Q ss_pred -chhhHHHHHHHHHH----cCCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCcc-hhccccCCcceeeccC
Q 038510 206 -HETVRAGRLLERLK----KEKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQD-VLSCKMDCQQNFFVDV 277 (871)
Q Consensus 206 -~~~~~~~~l~~~l~----~~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~~-va~~~~~~~~~~~l~~ 277 (871)
...+.+..+.+.+. .+++-++|+|+++.. ...+.+...+.....+..+|++|.+.+ +..........+.+++
T Consensus 87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~ 166 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP 166 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCC
Confidence 11223444555543 246789999999765 233444444433344567666666543 3322233456899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 278 LNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 278 L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
++.++..+.+..... . -.+....+++.++|.|..+..+
T Consensus 167 ~~~~~~~~~L~~~~~--~----~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 167 PPEQYAVTWLSREVT--M----SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CCHHHHHHHHHHHCC--C----CHHHHHHHHHHTTTCHHHHHHT
T ss_pred CCHHHHHHHHHHhcC--C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999988751 1 1345678999999999765443
No 198
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=0.00099 Score=72.92 Aligned_cols=296 Identities=12% Similarity=0.133 Sum_probs=149.2
Q ss_pred CceEEEecCCCCCccCcccccCCCcceEEEecCCC---CCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccEE
Q 038510 497 QLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMH---LLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEIL 570 (871)
Q Consensus 497 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L 570 (871)
.|+++.+.. ....+....|.++.+|+.+.+..+. ++.+. ..+.++.+|+.+.+..+ ++. ...+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 467776653 3455666777777777777776543 33333 23455566665554432 222 1335566667777
Q ss_pred EeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccchhcccchhhhccCC
Q 038510 571 SLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSERRNASLHELNHLS 649 (871)
Q Consensus 571 ~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 649 (871)
.+..+ +..++. .+..+.+|+.+.+.. .+..+....+. ..+|+.+.+..+.... ....+..+.
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~-~~~l~~i~ip~~~~~i-------------~~~af~~c~ 205 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT-GTALTQIHIPAKVTRI-------------GTNAFSECF 205 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT-TCCCSEEEECTTCCEE-------------CTTTTTTCT
T ss_pred cccce-eeeecccceecccccccccccc--eeeEecccccc-ccceeEEEECCccccc-------------ccchhhhcc
Confidence 66532 334442 355666777776654 34555554333 2456666654322110 112234445
Q ss_pred CCCeEEEeeccCCCCCcchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccceEEeecc
Q 038510 650 KLTSLEILIQDEKTIPSDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIEDLSLHGL 729 (871)
Q Consensus 650 ~L~~L~i~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 729 (871)
+|................+..........+... .....+....+.... ..........+.+|+.+.+...
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ip~~v-~~i~~~aF~~c~~L~~i~lp~~ 275 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRY---------PSQREDPAFKIPNGV-ARIETHAFDSCAYLASVKMPDS 275 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEEC---------CTTCCCSEEECCTTE-EEECTTTTTTCSSCCEEECCTT
T ss_pred ccceecccccccccccceeeccccccccccccc---------ccccccceEEcCCcc-eEcccceeeecccccEEecccc
Confidence 555544433222222111100000000000000 000111111111111 0112222344567777777432
Q ss_pred CCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccCCCCeEEE
Q 038510 730 LDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFCKLKNIRV 809 (871)
Q Consensus 730 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l 809 (871)
...+.. ....++++|+.+.+.+ .+..+... ....+.+|+.+.|.+ +++.+....|. .+.+|+.+.|
T Consensus 276 --~~~I~~-~aF~~c~~L~~i~l~~--~i~~I~~~-----aF~~c~~L~~i~lp~--~v~~I~~~aF~--~C~~L~~i~i 341 (394)
T 4gt6_A 276 --VVSIGT-GAFMNCPALQDIEFSS--RITELPES-----VFAGCISLKSIDIPE--GITQILDDAFA--GCEQLERIAI 341 (394)
T ss_dssp --CCEECT-TTTTTCTTCCEEECCT--TCCEECTT-----TTTTCTTCCEEECCT--TCCEECTTTTT--TCTTCCEEEE
T ss_pred --cceecC-cccccccccccccCCC--cccccCce-----eecCCCCcCEEEeCC--cccEehHhHhh--CCCCCCEEEE
Confidence 222221 1236778899888853 45555322 334567899998864 46666544443 4788999998
Q ss_pred ecCCCCCccCChhhhccCCcccEEEeccC
Q 038510 810 QRCDKLKNVFPLLIGRGLQQLQSIEVTKC 838 (871)
Q Consensus 810 ~~C~~L~~l~~~~~~~~l~~L~~L~i~~C 838 (871)
-. +++.+... .+.+|++|+++++.+.
T Consensus 342 p~--sv~~I~~~-aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 342 PS--SVTKIPES-AFSNCTALNNIEYSGS 367 (394)
T ss_dssp CT--TCCBCCGG-GGTTCTTCCEEEESSC
T ss_pred Cc--ccCEEhHh-HhhCCCCCCEEEECCc
Confidence 54 57777553 4588999999999764
No 199
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.92 E-value=8.8e-06 Score=76.82 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=50.6
Q ss_pred CcceEEEecCCCCCC-CCCccccccCCcEEEecccC-CCC--CcccCCC----CCccEEEeeCC-Cccccc-hhhcCCCC
Q 038510 520 TGLKVLDFTEMHLLP-LPSSLGLLQNLQTLCLNYCN-LGD--IAIIGDL----KKLEILSLRGS-DVEKLV-GEMGQLTQ 589 (871)
Q Consensus 520 ~~Lr~L~l~~~~i~~-lp~~i~~l~~Lr~L~L~~~~-i~~--~~~i~~l----~~L~~L~l~~~-~i~~lp-~~i~~L~~ 589 (871)
..|+.||+++|.++. -...+..+++|++|+|++|. +++ +..+..+ ++|++|++++| +|+.-- ..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777652 12345667777777777775 555 4555553 35777777766 355211 23556666
Q ss_pred CCEEeCCCCCCCCc
Q 038510 590 LRLLDLSKCFELKV 603 (871)
Q Consensus 590 L~~L~l~~~~~l~~ 603 (871)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777766665554
No 200
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.87 E-value=0.00017 Score=78.66 Aligned_cols=161 Identities=17% Similarity=0.234 Sum_probs=99.0
Q ss_pred CccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------c
Q 038510 149 DFMHFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------K 204 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~ 204 (871)
...++.|-++.+++|.+.+. -...+-|.++|++|+|||+||+++++..... |- .
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~--~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN--FIFSPASGIVDKYI 256 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGTCCSSS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EEEEehhhhccccc
Confidence 34566788888877766553 1235678999999999999999999987753 33 0
Q ss_pred cchhhHHHHHHHHHHcCCcEEEEEecCCCcc--------C--------hhhhccccC--CCCCCcEEEEeecCcchhc-c
Q 038510 205 SHETVRAGRLLERLKKEKKILIILDDIWGGL--------D--------LEAIGIPLA--DDNSGCKVLLTARSQDVLS-C 265 (871)
Q Consensus 205 ~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~iivTtr~~~va~-~ 265 (871)
......+..+........+++|++|+++... . ...+...+. ....+..||.||...+... .
T Consensus 257 Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpA 336 (437)
T 4b4t_L 257 GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPA 336 (437)
T ss_dssp SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHH
Confidence 1112334455555555688999999997431 0 111211111 2233456777776654431 1
Q ss_pred ccC---CcceeeccCCCHHHHHHHHHHHhCCCCC--CchhHHHHHHHHHHcCCch
Q 038510 266 KMD---CQQNFFVDVLNEKEAWSLFRKMTGDCIE--NGELKSVATEIVKECAGLP 315 (871)
Q Consensus 266 ~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~--~~~l~~~~~~I~~~c~GlP 315 (871)
... -+..+.++.-+.++-.++|+.+...... .-+ ...|++.+.|.-
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred HhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 111 3457888888888888888877643221 223 355777887764
No 201
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.84 E-value=9.9e-05 Score=82.62 Aligned_cols=139 Identities=15% Similarity=0.179 Sum_probs=85.0
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc--------cccccc--------chhhHHHH
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFEKS--------HETVRAGR 213 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~~~--------~~~~~~~~ 213 (871)
...++||++++++++..+......-+.++|++|+|||++|+.++...... ..|-.. ........
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~~ 258 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHHH
Confidence 45689999999999999976655677899999999999999999886321 111100 01123345
Q ss_pred HHHHHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcc------hhccccCCcceeeccCCCHHHHHHHH
Q 038510 214 LLERLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQD------VLSCKMDCQQNFFVDVLNEKEAWSLF 287 (871)
Q Consensus 214 l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~------va~~~~~~~~~~~l~~L~~~~~~~Lf 287 (871)
+...+...++.++++| ...+..+.+...+. . ..-++|.+|.... +.........++.++..+.++..+++
T Consensus 259 ~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~-~-g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL 334 (468)
T 3pxg_A 259 VMDEIRQAGNIILFID--AAIDASNILKPSLA-R-GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334 (468)
T ss_dssp HHHHHHTCCCCEEEEC--C--------CCCTT-S-SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEe--CchhHHHHHHHhhc-C-CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHH
Confidence 5556655677899999 22222223333332 1 2345555554433 11111122346999999999999999
Q ss_pred HHHhC
Q 038510 288 RKMTG 292 (871)
Q Consensus 288 ~~~~~ 292 (871)
.....
T Consensus 335 ~~~~~ 339 (468)
T 3pxg_A 335 QGLRD 339 (468)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 87654
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00028 Score=76.64 Aligned_cols=162 Identities=15% Similarity=0.195 Sum_probs=99.1
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------cc
Q 038510 150 FMHFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KS 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~ 205 (871)
...+.|-++.+++|.+.+. -...+-|.++|++|+|||+||+++++..... |- ..
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~--fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT--FIRVIGSELVQKYVG 285 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGCCCSSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC--eEEEEhHHhhcccCC
Confidence 3457788888888776543 1345778899999999999999999987653 43 01
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc--------C--------hhhhccccC--CCCCCcEEEEeecCcchhc-cc
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL--------D--------LEAIGIPLA--DDNSGCKVLLTARSQDVLS-CK 266 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~iivTtr~~~va~-~~ 266 (871)
.....+..+........+++|++|++.... . ...+...+. ....+-.||.||...+... ..
T Consensus 286 esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpAL 365 (467)
T 4b4t_H 286 EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPAL 365 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhh
Confidence 122344555555555688999999996431 0 001111111 1223334566665544321 11
Q ss_pred ---cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 267 ---MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 267 ---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
..-+..+.++..+.++-.++|+.++.......+.. .+.|++.+.|.-
T Consensus 366 lRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 366 LRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp HSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred hccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 13456888999999999999988776432222111 355778888764
No 203
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00011 Score=79.95 Aligned_cols=163 Identities=15% Similarity=0.191 Sum_probs=98.4
Q ss_pred cCCccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc----------
Q 038510 147 TQDFMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---------- 203 (871)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------- 203 (871)
......+.|-++.+++|.+.+. . ...+-|.++|++|+|||.||+++++..... |-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~--f~~v~~s~l~~~ 254 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT--FLKLAAPQLVQM 254 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE--EEEEEGGGGCSS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC--EEEEehhhhhhc
Confidence 3445667888888888877543 1 235678999999999999999999987653 33
Q ss_pred -ccchhhHHHHHHHHHHcCCcEEEEEecCCCc-------cC-----h----hhhccccCC--CCCCcEEEEeecCcchhc
Q 038510 204 -KSHETVRAGRLLERLKKEKKILIILDDIWGG-------LD-----L----EAIGIPLAD--DNSGCKVLLTARSQDVLS 264 (871)
Q Consensus 204 -~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~-------~~-----~----~~l~~~l~~--~~~gs~iivTtr~~~va~ 264 (871)
.......+..+........+++|++|+++.. .. . ..+...+.. ...+-.||.||...+...
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 0112233444555445557899999998532 00 1 112112211 223334666776654431
Q ss_pred c-cc---CCcceeeccCCCHHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCch
Q 038510 265 C-KM---DCQQNFFVDVLNEKEAWSLFRKMTGDCI--ENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 265 ~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlP 315 (871)
. .. .-+..+.++.-+.++-.++|+.+..... ..-+ .+.|++.+.|.-
T Consensus 335 ~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 335 PALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp TTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred HhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 1 11 2346788888898888888877654221 1122 355778887753
No 204
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00037 Score=74.92 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=99.4
Q ss_pred CCccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------
Q 038510 148 QDFMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----------- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----------- 203 (871)
....++.|-++.+++|.+.+. . ...+-|.++|++|+|||.||+++++..... |-
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~--fi~v~~s~l~sk~ 256 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT--FLRIVGSELIQKY 256 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE--EEEEESGGGCCSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC--EEEEEHHHhhhcc
Confidence 344567788888877766543 1 235679999999999999999999987753 33
Q ss_pred ccchhhHHHHHHHHHHcCCcEEEEEecCCCcc--------C--------hhhhccccC--CCCCCcEEEEeecCcchhc-
Q 038510 204 KSHETVRAGRLLERLKKEKKILIILDDIWGGL--------D--------LEAIGIPLA--DDNSGCKVLLTARSQDVLS- 264 (871)
Q Consensus 204 ~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~--------~~~l~~~l~--~~~~gs~iivTtr~~~va~- 264 (871)
.......+..+........+++|++|+++... . ...+...+. ....+-.||.||...+...
T Consensus 257 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 11122344555555556688999999986431 0 011111111 1223445666776655431
Q ss_pred ccc---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 265 CKM---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 265 ~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
... .-+..+.++.-+.++-.++|+.+.......++. -...|++.+.|.-
T Consensus 337 ALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 337 ALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp TSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred HHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 111 234568888888888889998877533222111 0345777777764
No 205
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.76 E-value=0.00014 Score=77.45 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCC--CceEEEEEcCCCCcHhHHHHHHHHHHhhc-ccccccchhhH------------HHHHHHHHHcCCc
Q 038510 159 TFKEILDALSNR--DFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKSHETVR------------AGRLLERLKKEKK 223 (871)
Q Consensus 159 ~~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~~~~------------~~~l~~~l~~~kr 223 (871)
....+..+...+ ....+.|+|++|+||||||+.+++..... ..|-..+.... .......+. +.
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 99 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK--SV 99 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH--TC
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc--CC
Confidence 344455555443 34678999999999999999999877432 12221111111 111222222 35
Q ss_pred EEEEEecCCCccC---h-hhhccccCC-CCCCcEEEEeecCcch-----h---ccccCCcceeeccCCCHHHHHHHHHHH
Q 038510 224 ILIILDDIWGGLD---L-EAIGIPLAD-DNSGCKVLLTARSQDV-----L---SCKMDCQQNFFVDVLNEKEAWSLFRKM 290 (871)
Q Consensus 224 ~LlvlDdv~~~~~---~-~~l~~~l~~-~~~gs~iivTtr~~~v-----a---~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 290 (871)
-+|++||+..... + +.+...+.. ...|.+||+||....- . .........+++++ +.++..+++...
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~ 178 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEK 178 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHH
Confidence 7999999976532 2 222222211 1235578888865321 1 01122235789999 999999999887
Q ss_pred hCCCCCCchhHHHHHHHHHHcCCchh
Q 038510 291 TGDCIENGELKSVATEIVKECAGLPI 316 (871)
Q Consensus 291 ~~~~~~~~~l~~~~~~I~~~c~GlPL 316 (871)
+..... .--.++.+.|++.+ |..-
T Consensus 179 ~~~~~~-~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 179 LKEFNL-ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHTTC-CCCHHHHHHHHHHC-SSHH
T ss_pred HHhcCC-CCCHHHHHHHHHhC-CCHH
Confidence 642111 11145677788888 7653
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.70 E-value=1.6e-05 Score=77.04 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=69.0
Q ss_pred cccCCCcceEEEecCC-CCC-----CCCCccccccCCcEEEecccCCCC--C----cccCCCCCccEEEeeCCCccc---
Q 038510 515 FFTGMTGLKVLDFTEM-HLL-----PLPSSLGLLQNLQTLCLNYCNLGD--I----AIIGDLKKLEILSLRGSDVEK--- 579 (871)
Q Consensus 515 ~~~~l~~Lr~L~l~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~--~----~~i~~l~~L~~L~l~~~~i~~--- 579 (871)
.+...+.|++|+|++| .+. .+...+...++|++|+|++|.+++ . ..+...++|++|++++|.+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3556677788888877 665 233445566778888888887765 1 234455678888888877663
Q ss_pred --cchhhcCCCCCCEEeC--CCCCCCCccC----hhhhhCCCCCcEEecccCCC
Q 038510 580 --LVGEMGQLTQLRLLDL--SKCFELKVIP----PNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 580 --lp~~i~~L~~L~~L~l--~~~~~l~~~p----~~~i~~L~~L~~L~l~~~~~ 625 (871)
+...+...++|++|++ ++| .++.-. ...+...++|++|++++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4555666777888888 555 333311 01244456777777776654
No 207
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.69 E-value=0.00012 Score=88.57 Aligned_cols=141 Identities=13% Similarity=0.234 Sum_probs=83.8
Q ss_pred CccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhh--------ccccc---cc----------ch
Q 038510 149 DFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKE--------NNLFE---KS----------HE 207 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------~~~F~---~~----------~~ 207 (871)
....++||++++.+++..+.....+-+.++|.+|+||||+|+.+++.... ...|- .. ..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~ 247 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 247 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CH
T ss_pred CCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHH
Confidence 34568999999999999988766667889999999999999999987633 11111 00 01
Q ss_pred hhHHHHHHHHHHc-CCcEEEEEecCCCcc-------Chh---hhccccCCCCCCcEEEEeecCcc---h--hccccCCcc
Q 038510 208 TVRAGRLLERLKK-EKKILIILDDIWGGL-------DLE---AIGIPLADDNSGCKVLLTARSQD---V--LSCKMDCQQ 271 (871)
Q Consensus 208 ~~~~~~l~~~l~~-~kr~LlvlDdv~~~~-------~~~---~l~~~l~~~~~gs~iivTtr~~~---v--a~~~~~~~~ 271 (871)
......+...+.. +++.+|++|++.... .++ .+...+ .. .+-++|.||.... + .........
T Consensus 248 ~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l-~~-~~i~~I~at~~~~~~~~~~d~aL~rRf~ 325 (854)
T 1qvr_A 248 EERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-AR-GELRLIGATTLDEYREIEKDPALERRFQ 325 (854)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH-HT-TCCCEEEEECHHHHHHHTTCTTTCSCCC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH-hC-CCeEEEEecCchHHhhhccCHHHHhCCc
Confidence 1223344444543 367999999997542 021 122222 11 2234555444322 1 111122234
Q ss_pred eeeccCCCHHHHHHHHHHHh
Q 038510 272 NFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 272 ~~~l~~L~~~~~~~Lf~~~~ 291 (871)
.+.+++++.++..+++....
T Consensus 326 ~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 326 PVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CEEECCCCHHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHhhh
Confidence 68999999999999987543
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.66 E-value=0.00048 Score=70.47 Aligned_cols=167 Identities=19% Similarity=0.243 Sum_probs=92.7
Q ss_pred CccccccchHHHHHHHHH---hcC---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc---c--------c
Q 038510 149 DFMHFESRKSTFKEILDA---LSN---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE---K--------S 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~--------~ 205 (871)
....++|.+..++++.+. +.. ...+-+.|+|++|+||||+|+.+++..... |- . .
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~~ 87 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVG 87 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHHhhh
Confidence 345678888777666543 322 113458899999999999999999876432 22 0 0
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc-----------C-----hhhhccccC--CCCCCcEEEEeecCcchh-ccc
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL-----------D-----LEAIGIPLA--DDNSGCKVLLTARSQDVL-SCK 266 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~-----------~-----~~~l~~~l~--~~~~gs~iivTtr~~~va-~~~ 266 (871)
........+.+........++++|++.... . ...+...+. ....+..||.||...+.. ...
T Consensus 88 ~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l 167 (257)
T 1lv7_A 88 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL 167 (257)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGG
T ss_pred hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHH
Confidence 112233444455444567899999984220 0 011111111 122344566677654422 111
Q ss_pred c---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCC-chhHHH
Q 038510 267 M---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAG-LPIAIV 319 (871)
Q Consensus 267 ~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~ 319 (871)
. .-...+.++..+.++-.+++..........++. ....++..+.| .+--+.
T Consensus 168 ~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 168 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHH
T ss_pred cCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHH
Confidence 1 223567888888888888887776432211111 13456777888 554444
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0004 Score=75.56 Aligned_cols=162 Identities=17% Similarity=0.237 Sum_probs=93.6
Q ss_pred CCccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------
Q 038510 148 QDFMHFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE----------- 203 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----------- 203 (871)
....++.|-++.+++|.+.+. -...+-|.++|++|+|||+||+++++..... |-
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~--~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA--FIRVNGSEFVHKY 246 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE--EEEEEGGGTCCSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eEEEecchhhccc
Confidence 344567788888888777553 1235668999999999999999999987653 33
Q ss_pred ccchhhHHHHHHHHHHcCCcEEEEEecCCCc--------cC--------hhhhccccC--CCCCCcEEEEeecCcchhc-
Q 038510 204 KSHETVRAGRLLERLKKEKKILIILDDIWGG--------LD--------LEAIGIPLA--DDNSGCKVLLTARSQDVLS- 264 (871)
Q Consensus 204 ~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~--------~~--------~~~l~~~l~--~~~~gs~iivTtr~~~va~- 264 (871)
.......+..+........++++++|++... .. ...+...+. ....+-.||.||...+...
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~ 326 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDP 326 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCH
T ss_pred cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcCh
Confidence 0112234455555555568899999998532 00 111111111 1233445666776654321
Q ss_pred ccc---CCcceeeccCCC-HHHHHHHHHHHhCCCC--CCchhHHHHHHHHHHcCCch
Q 038510 265 CKM---DCQQNFFVDVLN-EKEAWSLFRKMTGDCI--ENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 265 ~~~---~~~~~~~l~~L~-~~~~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlP 315 (871)
... .-+..+++..++ .++-..+|..+..... ..-+ ...|++.+.|.-
T Consensus 327 AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 327 ALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp HHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred hhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 111 223467776665 4555556665553222 1222 345777777763
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.65 E-value=0.00028 Score=75.26 Aligned_cols=171 Identities=18% Similarity=0.161 Sum_probs=95.9
Q ss_pred CCccccccchHHHHHHHHHhcC-----CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc---chhhHHHHHHHHHH
Q 038510 148 QDFMHFESRKSTFKEILDALSN-----RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS---HETVRAGRLLERLK 219 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~---~~~~~~~~l~~~l~ 219 (871)
.....++|++..++.+...+.. .....+.++|+.|+||||||+.+++.....-..... ........+...+
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~- 100 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSL- 100 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHC-
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHc-
Confidence 3445677888777776665542 234679999999999999999999987432111110 1111222222222
Q ss_pred cCCcEEEEEecCCCcc--ChhhhccccCCC--------CC----------CcEEE-EeecCcchhc-cccCCcceeeccC
Q 038510 220 KEKKILIILDDIWGGL--DLEAIGIPLADD--------NS----------GCKVL-LTARSQDVLS-CKMDCQQNFFVDV 277 (871)
Q Consensus 220 ~~kr~LlvlDdv~~~~--~~~~l~~~l~~~--------~~----------gs~ii-vTtr~~~va~-~~~~~~~~~~l~~ 277 (871)
.++-++++|++.... ..+.+...+... +. ...++ .|++...+.. ........+.+++
T Consensus 101 -~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~ 179 (334)
T 1in4_A 101 -ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDF 179 (334)
T ss_dssp -CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCC
T ss_pred -cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCC
Confidence 245678889986542 122221111000 00 11122 3444333321 1112234588999
Q ss_pred CCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCchhHHHHH
Q 038510 278 LNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLPIAIVPV 321 (871)
Q Consensus 278 L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 321 (871)
.+.++-.+++.+.+..... .--.+.+..|+++++|.|-.+..+
T Consensus 180 ~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 180 YTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 9999999999887642111 122467889999999999655433
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.59 E-value=0.00041 Score=82.98 Aligned_cols=140 Identities=15% Similarity=0.227 Sum_probs=88.6
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---------ccc------------ccchh
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---------LFE------------KSHET 208 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F~------------~~~~~ 208 (871)
...++||+.+++++++.+......-+.++|.+|+|||++|+.+++...... .|. .....
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e 264 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH
Confidence 456889999999999999876667788999999999999999998763211 111 01112
Q ss_pred hHHHHHHHHHHcCCcEEEEEecCCCcc--------C---hhhhccccCCCCCCcEEEEeecCcchh------ccccCCcc
Q 038510 209 VRAGRLLERLKKEKKILIILDDIWGGL--------D---LEAIGIPLADDNSGCKVLLTARSQDVL------SCKMDCQQ 271 (871)
Q Consensus 209 ~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~---~~~l~~~l~~~~~gs~iivTtr~~~va------~~~~~~~~ 271 (871)
.....+.+.+...++.+|++||+.... . .+.+...+ .. .+.++|.+|...+.. ........
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l-~~-~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-SS-GKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS-SS-CCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH-hC-CCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 334455555554567999999997541 1 11222222 22 334566665543211 00111223
Q ss_pred eeeccCCCHHHHHHHHHHHh
Q 038510 272 NFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 272 ~~~l~~L~~~~~~~Lf~~~~ 291 (871)
.+.++..+.++..+++....
T Consensus 343 ~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 68899999999988887654
No 212
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.55 E-value=0.00094 Score=73.98 Aligned_cols=162 Identities=18% Similarity=0.229 Sum_probs=94.3
Q ss_pred ccccccchHHHHHHHHHhc---CC---------CceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cc
Q 038510 150 FMHFESRKSTFKEILDALS---NR---------DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SH 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~ 206 (871)
...+.|.++.++++.+.+. .. -.+-|.++|++|+|||+||+.+++..... |-. ..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~--f~~is~~~~~~~~~g~ 92 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP--FFHISGSDFVELFVGV 92 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGGGTTTCCTTH
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC--eeeCCHHHHHHHHhcc
Confidence 4567788877666655432 21 12347899999999999999999876542 320 01
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCcc----------------ChhhhccccC--CCCCCcEEEEeecCcchhc-ccc
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGL----------------DLEAIGIPLA--DDNSGCKVLLTARSQDVLS-CKM 267 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~----------------~~~~l~~~l~--~~~~gs~iivTtr~~~va~-~~~ 267 (871)
.......+........+.+|+||++.... ....+...+. ....+..||.||...+... ...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 11223344444444678999999995531 1122221111 1123556777776654331 111
Q ss_pred ---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 268 ---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 268 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.-...+.++..+.++-.+++..++......++. ....|++.+.|..
T Consensus 173 R~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 173 RPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred ccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 223478888888888888888776533222211 1344788888876
No 213
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=0.00032 Score=83.83 Aligned_cols=139 Identities=14% Similarity=0.180 Sum_probs=85.5
Q ss_pred ccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc--------ccccc--------cchhhHHHH
Q 038510 150 FMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--------NLFEK--------SHETVRAGR 213 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~~--------~~~~~~~~~ 213 (871)
...++||++++++++..+......-+.++|++|+|||++|+.+++..... ..|-. .........
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~ 258 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKK 258 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHH
Confidence 45689999999999999986666668899999999999999999886321 11110 011123445
Q ss_pred HHHHHHcCCcEEEEEecCCCccChhhhccccCCCCCCcEEEEeecCcc------hhccccCCcceeeccCCCHHHHHHHH
Q 038510 214 LLERLKKEKKILIILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQD------VLSCKMDCQQNFFVDVLNEKEAWSLF 287 (871)
Q Consensus 214 l~~~l~~~kr~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~------va~~~~~~~~~~~l~~L~~~~~~~Lf 287 (871)
+...+...++.+|++| ...+..+.+...+ . ...-++|.||.... +-......-..+.++..+.++..+++
T Consensus 259 ~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il 334 (758)
T 3pxi_A 259 VMDEIRQAGNIILFID--AAIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQIL 334 (758)
T ss_dssp HHHHHHTCCCCEEEEC--C--------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEc--CchhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHH
Confidence 5555655678899999 2222222233232 2 22345665555443 11111112256999999999999999
Q ss_pred HHHhC
Q 038510 288 RKMTG 292 (871)
Q Consensus 288 ~~~~~ 292 (871)
.....
T Consensus 335 ~~~~~ 339 (758)
T 3pxi_A 335 QGLRD 339 (758)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 87654
No 214
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.52 E-value=4.7e-05 Score=73.35 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=57.5
Q ss_pred chHHHHHHHHHhcC---CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--ccchhhHHH------------HHHHHH
Q 038510 156 RKSTFKEILDALSN---RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--KSHETVRAG------------RLLERL 218 (871)
Q Consensus 156 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~~~~~~~------------~l~~~l 218 (871)
+...++.+.+++.+ .....+.|+|+.|+||||||+.+++.......+. ......... .+.+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV 98 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh
Confidence 44455555555542 2357899999999999999999998875221111 000111111 223333
Q ss_pred HcCCcEEEEEecCCC--ccChh--hhccccCC-CCCCcEEEEeecCc
Q 038510 219 KKEKKILIILDDIWG--GLDLE--AIGIPLAD-DNSGCKVLLTARSQ 260 (871)
Q Consensus 219 ~~~kr~LlvlDdv~~--~~~~~--~l~~~l~~-~~~gs~iivTtr~~ 260 (871)
. +.-+|||||++. .+.|. .+...+.. ...|..||+||...
T Consensus 99 ~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 L--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp H--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred c--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3 456899999974 23343 12111111 12466788888654
No 215
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.52 E-value=0.00011 Score=75.85 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=78.3
Q ss_pred ccccccchHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cc
Q 038510 150 FMHFESRKSTFKEILDALS---N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SH 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~ 206 (871)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++..... |-. ..
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--~~~v~~~~~~~~~~~~ 87 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP--FFSMGGSSFIEMFVGL 87 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC--CCCCCSCTTTTSCSSS
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--EEEechHHHHHhhcch
Confidence 3457777766666555433 1 112347799999999999999999876532 220 00
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCcc-----------------ChhhhccccCC---CCCCcEEEEeecCcchhc-c
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGL-----------------DLEAIGIPLAD---DNSGCKVLLTARSQDVLS-C 265 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~-----------------~~~~l~~~l~~---~~~gs~iivTtr~~~va~-~ 265 (871)
.......+.+.....+..+|++||+.... ....+...+.. ......||.||....... .
T Consensus 88 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~ 167 (268)
T 2r62_A 88 GASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPA 167 (268)
T ss_dssp CSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHh
Confidence 00111223333333466899999995431 12222222211 112245666776554221 1
Q ss_pred cc---CCcceeeccCCCHHHHHHHHHHHhC
Q 038510 266 KM---DCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 266 ~~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
.. .-...+.++..+.++-.+++...+.
T Consensus 168 l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 168 LMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp GGSSSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred HcCCCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 11 2235678888888888888877654
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=7.7e-05 Score=76.01 Aligned_cols=59 Identities=29% Similarity=0.317 Sum_probs=25.9
Q ss_pred CCcceEEEecCCCCCCCC---CccccccCCcEEEecccCCCCCcccCCCC--CccEEEeeCCCc
Q 038510 519 MTGLKVLDFTEMHLLPLP---SSLGLLQNLQTLCLNYCNLGDIAIIGDLK--KLEILSLRGSDV 577 (871)
Q Consensus 519 l~~Lr~L~l~~~~i~~lp---~~i~~l~~Lr~L~L~~~~i~~~~~i~~l~--~L~~L~l~~~~i 577 (871)
++.|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+..+..+. +|++|++++|.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcC
Confidence 444555555555544322 23334445555555554444432222222 444444444443
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.51 E-value=0.0012 Score=73.74 Aligned_cols=168 Identities=11% Similarity=0.156 Sum_probs=98.7
Q ss_pred ccccccchHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------c
Q 038510 150 FMHFESRKSTFKEILDALS-------------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------S 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~ 205 (871)
...++|.+..++++.+++. ....+-|.|+|++|+|||++|+.+++.... .|-. .
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~--~fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAG 280 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS--EEEEEEHHHHHTSCTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC--CEEEEEchHhhhhhcc
Confidence 4467899998888887764 233456899999999999999999886532 3331 0
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc-------------ChhhhccccC--CCCCCcEEEEeecCcch-hcccc--
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL-------------DLEAIGIPLA--DDNSGCKVLLTARSQDV-LSCKM-- 267 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~-------------~~~~l~~~l~--~~~~gs~iivTtr~~~v-a~~~~-- 267 (871)
........+.+....+++.+|+||++.... ....+...+. ....+.+||.||..... .....
T Consensus 281 ~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~ 360 (489)
T 3hu3_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (489)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGST
T ss_pred hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCC
Confidence 111223334444445678899999994221 0111221111 12234456666665432 11111
Q ss_pred -CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCc-hhHHHHH
Q 038510 268 -DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGL-PIAIVPV 321 (871)
Q Consensus 268 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 321 (871)
.-...+.+...+.++-.+++...+.......+ ....++++.+.|. +-.+..+
T Consensus 361 gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred CcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 22346889999999999999988764322111 1134577777775 4444433
No 218
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.49 E-value=5e-05 Score=73.45 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=80.0
Q ss_pred CCCCceEEEecCC-CCCcc----CcccccCCCcceEEEecCCCCCC-----CCCccccccCCcEEEecccCCCC------
Q 038510 494 ECPQLKYFRIGND-PSLRI----PDNFFTGMTGLKVLDFTEMHLLP-----LPSSLGLLQNLQTLCLNYCNLGD------ 557 (871)
Q Consensus 494 ~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~Lr~L~l~~~~i~~-----lp~~i~~l~~Lr~L~L~~~~i~~------ 557 (871)
.+++|++|+++++ .+..- ....+...+.|++|+|++|.+.. +...+...++|++|+|++|.|++
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4677888888876 55421 12235667899999999999872 34456667899999999999876
Q ss_pred CcccCCCCCccEEEe--eCCCccc-----cchhhcCCCCCCEEeCCCC
Q 038510 558 IAIIGDLKKLEILSL--RGSDVEK-----LVGEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 558 ~~~i~~l~~L~~L~l--~~~~i~~-----lp~~i~~L~~L~~L~l~~~ 598 (871)
...+....+|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 255777889999999 8888773 5556777899999999987
No 219
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=0.00015 Score=73.88 Aligned_cols=79 Identities=19% Similarity=0.216 Sum_probs=57.9
Q ss_pred ccccCCcEEEecccCCCCCcc----cCCCCCccEEEeeCCCccccchhhcCCC--CCCEEeCCCCCCCCccC------hh
Q 038510 540 GLLQNLQTLCLNYCNLGDIAI----IGDLKKLEILSLRGSDVEKLVGEMGQLT--QLRLLDLSKCFELKVIP------PN 607 (871)
Q Consensus 540 ~~l~~Lr~L~L~~~~i~~~~~----i~~l~~L~~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~~p------~~ 607 (871)
.++++|++|+|++|.+..+.. +..+++|++|+|++|.++.+. .+..+. +|++|++.+|+....+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 467889999999999877433 457899999999999888763 345555 88889988885444444 23
Q ss_pred hhhCCCCCcEEe
Q 038510 608 VISSLSRLEELY 619 (871)
Q Consensus 608 ~i~~L~~L~~L~ 619 (871)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467788888876
No 220
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.45 E-value=4.8e-05 Score=70.31 Aligned_cols=106 Identities=8% Similarity=0.072 Sum_probs=60.8
Q ss_pred ccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhh-ccccc----ccchhhHHHHHHHHHHcCCcE
Q 038510 152 HFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE-NNLFE----KSHETVRAGRLLERLKKEKKI 224 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~----~~~~~~~~~~l~~~l~~~kr~ 224 (871)
.++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+++.... ...|- ............+.. +.-
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a---~~g 78 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALA---QGG 78 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHH---TTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHc---CCc
Confidence 46788888888887764 223345689999999999999999986422 22232 000111111222222 335
Q ss_pred EEEEecCCCcc--ChhhhccccCCCCCCcEEEEeecCc
Q 038510 225 LIILDDIWGGL--DLEAIGIPLADDNSGCKVLLTARSQ 260 (871)
Q Consensus 225 LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iivTtr~~ 260 (871)
.|+||++.... ....+...+.......+||.||...
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 78999997652 2233333333334455787777653
No 221
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.45 E-value=0.0051 Score=66.79 Aligned_cols=122 Identities=9% Similarity=0.110 Sum_probs=63.5
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCCC-ccccccCCcEEEecccCCCCC-cccCCCCCccEEE
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLPS-SLGLLQNLQTLCLNYCNLGDI-AIIGDLKKLEILS 571 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~~-~~i~~l~~L~~L~ 571 (871)
...+|+++.+.. ....++...|.++.+|+.+.+..+ ++.++. .+.++ .|..+.+..+ ++.+ .......+|+.+.
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccccc
Confidence 345566666643 344566667777777777777543 444442 34444 4555555432 2221 1111223677777
Q ss_pred eeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEeccc
Q 038510 572 LRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGE 622 (871)
Q Consensus 572 l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~ 622 (871)
+..+ +..+....-.-.+|..+.+.. .+..+....+..+.+|+...+..
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECT
T ss_pred CCCc-cccccccccccceeeeeeccc--eeeccccchhccccccccccccc
Confidence 7543 344443332334566665543 34455555456666676666544
No 222
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.00047 Score=72.09 Aligned_cols=135 Identities=13% Similarity=0.047 Sum_probs=86.7
Q ss_pred cchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc--cccc-----cc---chhhHHHHHHHHHHc----
Q 038510 155 SRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN--NLFE-----KS---HETVRAGRLLERLKK---- 220 (871)
Q Consensus 155 gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~-----~~---~~~~~~~~l~~~l~~---- 220 (871)
|.++.++.+.+.+..++.+...++|+.|+||||+|+.+.+....- .|.+ .. .....+..+.+.+..
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~ 80 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 80 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcccc
Confidence 344566777777776667899999999999999999998753210 1222 11 222334555555532
Q ss_pred CCcEEEEEecCCCc--cChhhhccccCCCCCCcEEEEeecCc-chhccccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 221 EKKILIILDDIWGG--LDLEAIGIPLADDNSGCKVLLTARSQ-DVLSCKMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 221 ~kr~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iivTtr~~-~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
+++-++|+|++... ...+.+...+-.....+.+|++|.+. .+.. ..... .++++++++++..+.+.+..
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~-tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP-TIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH-HHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChH-HHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 45679999999764 34455554444444567777666543 3332 22222 89999999999999988876
No 223
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.26 E-value=0.00021 Score=70.09 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCC----CceEEEEEcCCCCcHhHHHHHHHHHHhhcc-cccccchhh------------HHHHHHHHHHc
Q 038510 158 STFKEILDALSNR----DFNMIGVYGMGGIGKTTLVKEVGRQAKENN-LFEKSHETV------------RAGRLLERLKK 220 (871)
Q Consensus 158 ~~~~~l~~~l~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~~~~------------~~~~l~~~l~~ 220 (871)
..++.+.+++... ..+.+.|+|++|+|||+||+.+++....+. .+-...... ....+...+.+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK 115 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC
Confidence 3455556665522 126889999999999999999998875431 111000000 01223344443
Q ss_pred CCcEEEEEecCCCc--cChhh--hcc-ccCCC-CCCcEEEEeecCc
Q 038510 221 EKKILIILDDIWGG--LDLEA--IGI-PLADD-NSGCKVLLTARSQ 260 (871)
Q Consensus 221 ~kr~LlvlDdv~~~--~~~~~--l~~-~l~~~-~~gs~iivTtr~~ 260 (871)
. -+|||||++.. ..|.. +.. .+... ..+.++|+||...
T Consensus 116 -~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 116 -V-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp -S-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred -C-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 2 39999999653 34432 211 11111 2355788888753
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.25 E-value=0.0057 Score=62.21 Aligned_cols=162 Identities=18% Similarity=0.237 Sum_probs=85.6
Q ss_pred ccccccchHHHHHHHHH---hcC---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------c
Q 038510 150 FMHFESRKSTFKEILDA---LSN---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS-----------H 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~---l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-----------~ 206 (871)
...++|.++.+.++.+. +.. .-.+-+.|+|+.|+||||||+.++...... |-.. .
T Consensus 15 ~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~--~i~~~~~~~~~~~~~~ 92 (254)
T 1ixz_A 15 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--FITASGSDFVEMFVGV 92 (254)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEHHHHHHSCTTH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--EEEeeHHHHHHHHhhH
Confidence 34567776655554433 221 011238999999999999999999876521 2100 0
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCcc------------C----hhhhccccCCCC--CCcEEEEeecCcchhcc-cc
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGL------------D----LEAIGIPLADDN--SGCKVLLTARSQDVLSC-KM 267 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~------------~----~~~l~~~l~~~~--~gs~iivTtr~~~va~~-~~ 267 (871)
.......+.+........++++|++.... . ...+...+..+. ....++.||...++... ..
T Consensus 93 ~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~ 172 (254)
T 1ixz_A 93 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 172 (254)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGG
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHc
Confidence 11122333444332356899999994220 1 112222222111 22234556666554311 11
Q ss_pred ---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 268 ---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 268 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.-...+.++..+.++-.+++...+......++. ....|++.+.|.-
T Consensus 173 r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 173 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 234578888889888888887766432211111 1335677777753
No 225
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.23 E-value=7.7e-05 Score=68.67 Aligned_cols=105 Identities=10% Similarity=0.062 Sum_probs=57.6
Q ss_pred ccccchHHHHHHHHHhcC--CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccchhhHHHH-HHHHHHcCCcEEEEE
Q 038510 152 HFESRKSTFKEILDALSN--RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHETVRAGR-LLERLKKEKKILIIL 228 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~-l~~~l~~~kr~Llvl 228 (871)
.++|++..++++.+.+.. ....-|.|+|..|+|||++|+.+++... .|-...-...... ....+...+.-.++|
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~~l~l 81 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVEYLIDMPMELLQKAEGGVLYV 81 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTTHHHHCHHHHHHHTTTSEEEE
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhhCChHhhhhHHHhCCCCeEEE
Confidence 467888888777776641 2234477999999999999999987554 3331111111111 122222223457899
Q ss_pred ecCCCcc--ChhhhccccCCC-CCCcEEEEeecC
Q 038510 229 DDIWGGL--DLEAIGIPLADD-NSGCKVLLTARS 259 (871)
Q Consensus 229 Ddv~~~~--~~~~l~~~l~~~-~~gs~iivTtr~ 259 (871)
|++.... ....+...+... ..+.+||.||..
T Consensus 82 Dei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 82 GDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp EECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred eChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 9997652 222232222211 345677777754
No 226
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.17 E-value=0.00097 Score=70.31 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=52.8
Q ss_pred ccccchHHHHHHHHHhcCC---------CceEEEEEcCCCCcHhHHHHHHHHHHhhc-cccc-----ccch----hhH--
Q 038510 152 HFESRKSTFKEILDALSNR---------DFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFE-----KSHE----TVR-- 210 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-----~~~~----~~~-- 210 (871)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... ..|- .... ...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 97 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIG 97 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcC
Confidence 3668888877777766521 23589999999999999999999876432 1121 0000 000
Q ss_pred ----------HHHHHHHHHcCCcEEEEEecCCCc
Q 038510 211 ----------AGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 211 ----------~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
...+...+.....-+++||++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 98 APPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp CCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred CCCccccccccchHHHHHHhCCCeEEEEeChhhc
Confidence 023444454445679999999755
No 227
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.14 E-value=0.0057 Score=66.78 Aligned_cols=293 Identities=15% Similarity=0.167 Sum_probs=159.3
Q ss_pred CCCCCceEEEecCC---CCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCC
Q 038510 493 FECPQLKYFRIGND---PSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKK 566 (871)
Q Consensus 493 ~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~ 566 (871)
.+|.+|+++.+..+ ....+....|.++..|+.+.+..+ ++.++ ..+..+.+|+.+.+..+- .. ...+..+.+
T Consensus 84 ~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~ 161 (394)
T 4gt6_A 84 YNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYS 161 (394)
T ss_dssp TTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTT
T ss_pred hCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeecccceecccc
Confidence 37999999999763 356678888999999988877654 44444 456788999999997543 33 245778899
Q ss_pred ccEEEeeCCCccccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCCCccccccccch---hcccchh
Q 038510 567 LEILSLRGSDVEKLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPIQWGTVEGLDSE---RRNASLH 643 (871)
Q Consensus 567 L~~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~---~~~~~l~ 643 (871)
|+.+.+..+ ++.+....-...+|+.+.+.. .+..+....+..+.+|.............. +.... .....+.
T Consensus 162 L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 236 (394)
T 4gt6_A 162 LHTVTLPDS-VTAIEERAFTGTALTQIHIPA--KVTRIGTNAFSECFALSTITSDSESYPAID--NVLYEKSANGDYALI 236 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCCCSEEEECT--TCCEECTTTTTTCTTCCEEEECCSSSCBSS--SCEEEECTTSCEEEE
T ss_pred cccccccce-eeEeccccccccceeEEEECC--cccccccchhhhccccceeccccccccccc--ceeeccccccccccc
Confidence 999998754 666665444457899998875 355555565777888887765443221110 00000 0000000
Q ss_pred hhccCCCCCeEEEeeccCCCCC-cchhhhccceeEEEEeeecccCCCCCCCccceeEEEeccCCcccchhhHHhhhcccc
Q 038510 644 ELNHLSKLTSLEILIQDEKTIP-SDLLFFKILKRYRIFIGYLWSDDPILDGFSRKFKLKITNGANICLNEGHIMQLKGIE 722 (871)
Q Consensus 644 ~L~~L~~L~~L~i~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~l~~L~ 722 (871)
.......+....+.. ....+. ..+..+.+|++ +.+.... .....+....+++|+
T Consensus 237 ~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~-----------------------i~lp~~~-~~I~~~aF~~c~~L~ 291 (394)
T 4gt6_A 237 RYPSQREDPAFKIPN-GVARIETHAFDSCAYLAS-----------------------VKMPDSV-VSIGTGAFMNCPALQ 291 (394)
T ss_dssp ECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCE-----------------------EECCTTC-CEECTTTTTTCTTCC
T ss_pred ccccccccceEEcCC-cceEcccceeeecccccE-----------------------Eeccccc-ceecCcccccccccc
Confidence 011111222222110 000000 11122333333 3332222 122333344457788
Q ss_pred eEEeeccCCceeccccCCCCCCCCccEEEeecCCCceeEeecCcccccCCcCCccceeeccccccccccccccCCccccC
Q 038510 723 DLSLHGLLDMKNVLCEPGREGFPQLKHLEVRDNRSLFCVVDTVDCATALTAFPLLESLFLEDLGNLEKICRGSLTAESFC 802 (871)
Q Consensus 723 ~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~fp~L~~L~l~~~~~l~~l~~~~~~~~~~~ 802 (871)
.+.+.. .+..+... ...++.+|+.+.|.+ +++.+.+. ....+.+|+.+.|-. +++.+....|. .++
T Consensus 292 ~i~l~~--~i~~I~~~-aF~~c~~L~~i~lp~--~v~~I~~~-----aF~~C~~L~~i~ip~--sv~~I~~~aF~--~C~ 357 (394)
T 4gt6_A 292 DIEFSS--RITELPES-VFAGCISLKSIDIPE--GITQILDD-----AFAGCEQLERIAIPS--SVTKIPESAFS--NCT 357 (394)
T ss_dssp EEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTT-----TTTTCTTCCEEEECT--TCCBCCGGGGT--TCT
T ss_pred cccCCC--cccccCce-eecCCCCcCEEEeCC--cccEehHh-----HhhCCCCCCEEEECc--ccCEEhHhHhh--CCC
Confidence 777742 33333322 246788999998864 46665322 334567888888853 45666444443 578
Q ss_pred CCCeEEEecCCCCCccCChhhhccCCcccEEEec
Q 038510 803 KLKNIRVQRCDKLKNVFPLLIGRGLQQLQSIEVT 836 (871)
Q Consensus 803 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~i~ 836 (871)
+|+.+.+.+.. ... ..+..+.+|+.+.+.
T Consensus 358 ~L~~i~~~~~~--~~~---~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 358 ALNNIEYSGSR--SQW---NAISTDSGLQNLPVA 386 (394)
T ss_dssp TCCEEEESSCH--HHH---HTCBCCCCC------
T ss_pred CCCEEEECCce--eeh---hhhhccCCCCEEEeC
Confidence 89998887632 111 223556777777663
No 228
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.13 E-value=0.002 Score=67.73 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=76.9
Q ss_pred ccccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--------c-----
Q 038510 152 HFESRKSTFKEILDALSN--------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--------K----- 204 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~----- 204 (871)
.++|++..++.+...+.. .....+.++|++|+|||++|+.+++..... |- .
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~--~~~i~~~~~~~~~~~~ 93 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTEVGYVG 93 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC--EEEEEGGGGSSCCSGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEcchhcccCCccC
Confidence 467888888888776642 234567899999999999999999876431 21 0
Q ss_pred cchhhHHHHHHHH----HHc-CCcEEEEEecCCCcc--C------------hhhhccccCCC----------CCCcEEEE
Q 038510 205 SHETVRAGRLLER----LKK-EKKILIILDDIWGGL--D------------LEAIGIPLADD----------NSGCKVLL 255 (871)
Q Consensus 205 ~~~~~~~~~l~~~----l~~-~kr~LlvlDdv~~~~--~------------~~~l~~~l~~~----------~~gs~iiv 255 (871)
.........+... +.. +++.+|+||++.... . .+.+...+... ..+..+|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 94 KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp GSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred ccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 0011122222221 110 136799999997542 1 22222222111 12344555
Q ss_pred eec----Ccc-hh-ccccCCcceeeccCCCHHHHHHHHHH
Q 038510 256 TAR----SQD-VL-SCKMDCQQNFFVDVLNEKEAWSLFRK 289 (871)
Q Consensus 256 Ttr----~~~-va-~~~~~~~~~~~l~~L~~~~~~~Lf~~ 289 (871)
||. ... +. .........+.+++++.++..+++..
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 542 111 11 10112235699999999999998875
No 229
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.11 E-value=0.0069 Score=62.53 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=87.2
Q ss_pred CccccccchHHHHHHHHHhc---CC---------CceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------
Q 038510 149 DFMHFESRKSTFKEILDALS---NR---------DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS----------- 205 (871)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~l~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~----------- 205 (871)
....++|.++.++++.+... .. -.+-+.|+|+.|+||||||+.++...... |-..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~--~i~~~~~~~~~~~~~ 115 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--FITASGSDFVEMFVG 115 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEHHHHHHSTTT
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC--EEEecHHHHHHHHhh
Confidence 34567787776655544322 10 01238999999999999999999876521 2100
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCc------------cChh----hhccccCCCC--CCcEEEEeecCcchhcc-c
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGG------------LDLE----AIGIPLADDN--SGCKVLLTARSQDVLSC-K 266 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~------------~~~~----~l~~~l~~~~--~gs~iivTtr~~~va~~-~ 266 (871)
.....+..+.+........++|+|++... ..+. .+...+..+. ....++.||...++... .
T Consensus 116 ~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l 195 (278)
T 1iy2_A 116 VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 195 (278)
T ss_dssp HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhH
Confidence 01112233444443345689999999421 0111 1212222111 12234456665544311 1
Q ss_pred ---cCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 267 ---MDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 267 ---~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
..-...+.++..+.++-.+++...+......++. ....|+..+.|..
T Consensus 196 ~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 196 LRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred cCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 1234578888889888888888766432211111 1335677777754
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.98 E-value=0.0034 Score=73.75 Aligned_cols=162 Identities=11% Similarity=0.176 Sum_probs=94.5
Q ss_pred ccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------c
Q 038510 150 FMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------S 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~ 205 (871)
...+.|-++.+++|.+++. . ...+-|.++|++|+|||+||+++++..... |-. .
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~--~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAG 280 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE--EEEEEHHHHHSSCTT
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe--EEEEEhHHhhcccch
Confidence 3445677776666665542 1 234678999999999999999999876542 331 1
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCcc--------Ch-----hhhccccC--CCCCCcEEEEeecCcchhcc-cc--
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGL--------DL-----EAIGIPLA--DDNSGCKVLLTARSQDVLSC-KM-- 267 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~--------~~-----~~l~~~l~--~~~~gs~iivTtr~~~va~~-~~-- 267 (871)
.....+..+.+......+.+|+||+++... +. ..+...+. ....+-.||.||...+.... ..
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~ 360 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTST
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCC
Confidence 122334455555555678999999996531 11 11111111 11223345556655433211 11
Q ss_pred -CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 268 -DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 268 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.-...++++..+.++-.++|..+........+. -..+|++++.|.-
T Consensus 361 GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 361 GRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp TSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCC
T ss_pred cccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCC
Confidence 234578899999999899998776533221111 1456788888874
No 231
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.86 E-value=0.0088 Score=61.42 Aligned_cols=142 Identities=14% Similarity=0.193 Sum_probs=79.9
Q ss_pred ccccccchHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--c-----c---c
Q 038510 150 FMHFESRKSTFKEILDALS----N---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--K-----S---H 206 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~-----~---~ 206 (871)
...+.|-++.++++.+.+. . .-.+-+.++|++|+||||||+.++...... .+. . . .
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~-~i~i~g~~l~~~~~~~ 87 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN-FISVKGPELLNMYVGE 87 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE-EEEEETTTTCSSTTHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC-EEEEEcHHHHhhhhhH
Confidence 3456677777776665432 1 111229999999999999999999876542 111 0 0 0
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCCccC---------h----hhhccccCCC--CCCcEEEEeecCcchhcc-cc---
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWGGLD---------L----EAIGIPLADD--NSGCKVLLTARSQDVLSC-KM--- 267 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~---------~----~~l~~~l~~~--~~gs~iivTtr~~~va~~-~~--- 267 (871)
....+..+.+......+.++++|++..... . ..+...+..+ ....-++.+|...++... ..
T Consensus 88 ~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~g 167 (274)
T 2x8a_A 88 SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPG 167 (274)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTT
T ss_pred HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcc
Confidence 112233444444334678999999965310 0 1111112111 123345567776655411 11
Q ss_pred CCcceeeccCCCHHHHHHHHHHHhC
Q 038510 268 DCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 268 ~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
.-...+.++..+.++-.++|+....
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 3356788888899888888887764
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.72 E-value=0.0023 Score=76.42 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=78.9
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHhHHHHHHHHHHhh-ccccc--------ccchhhHHHH
Q 038510 152 HFESRKSTFKEILDALSN---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKE-NNLFE--------KSHETVRAGR 213 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~--------~~~~~~~~~~ 213 (871)
.++|.+..++.+...+.. .....+.++|++|+|||++|+.+++.... ...|- ...... ...
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~-~~~ 570 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS-GGQ 570 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc-cch
Confidence 477999888888777651 12237999999999999999999987632 12232 000000 122
Q ss_pred HHHHHHcCCcEEEEEecCCCcc--ChhhhccccC-----C------CCCCcEEEEeecCcc-------------hh-ccc
Q 038510 214 LLERLKKEKKILIILDDIWGGL--DLEAIGIPLA-----D------DNSGCKVLLTARSQD-------------VL-SCK 266 (871)
Q Consensus 214 l~~~l~~~kr~LlvlDdv~~~~--~~~~l~~~l~-----~------~~~gs~iivTtr~~~-------------va-~~~ 266 (871)
+...+.....-+|+||++.... ..+.+...+. + .....+||+||.... .. ...
T Consensus 571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~ 650 (758)
T 3pxi_A 571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI 650 (758)
T ss_dssp CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence 3333443445689999997542 2222221111 1 123457888887311 00 001
Q ss_pred cCCcceeeccCCCHHHHHHHHHHHh
Q 038510 267 MDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 267 ~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
..-...+.+.+++.++-.+++....
T Consensus 651 ~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 651 NRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp TTSSEEEECC--CHHHHHHHHHHHH
T ss_pred hhCCeEEecCCCCHHHHHHHHHHHH
Confidence 2223588999999999888876653
No 233
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.62 E-value=0.0064 Score=69.09 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=73.5
Q ss_pred ccccchHHHHHHHHHhc------CCCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----c-cchh-------h---
Q 038510 152 HFESRKSTFKEILDALS------NRDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----K-SHET-------V--- 209 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~-~~~~-------~--- 209 (871)
.++|-++..+.+.+.+. .....++.++|++|+||||||+.++...... |. . .... .
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--FVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--EEEECCCC----------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--eEEEEecccchhhhhhhHHHHHhc
Confidence 35677766666654432 2345689999999999999999999877432 32 0 0000 0
Q ss_pred -HHHHHHHHHHc--CCcEEEEEecCCCccC------hhhhccccCC--------CC-------CCcEEEEeecCcchh-c
Q 038510 210 -RAGRLLERLKK--EKKILIILDDIWGGLD------LEAIGIPLAD--------DN-------SGCKVLLTARSQDVL-S 264 (871)
Q Consensus 210 -~~~~l~~~l~~--~kr~LlvlDdv~~~~~------~~~l~~~l~~--------~~-------~gs~iivTtr~~~va-~ 264 (871)
....+.+.+.. ...-+++||++..... ...+...+.. .. ...+||.||...... .
T Consensus 160 ~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~ 239 (543)
T 3m6a_A 160 AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPG 239 (543)
T ss_dssp ----CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCH
T ss_pred cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCH
Confidence 01112222221 1345889999975421 1222222211 00 233566666553321 1
Q ss_pred cccCCcceeeccCCCHHHHHHHHHHHh
Q 038510 265 CKMDCQQNFFVDVLNEKEAWSLFRKMT 291 (871)
Q Consensus 265 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 291 (871)
........+.+.+++.++-.+++..+.
T Consensus 240 aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 240 PLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred HHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 111122468889999888877776653
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.60 E-value=0.0014 Score=67.27 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=33.4
Q ss_pred cccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 151 MHFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..++|+...+.++.+.+. ......|.|+|..|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 457788888887776554 22235677999999999999999998654
No 235
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.58 E-value=0.019 Score=63.85 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=87.9
Q ss_pred ccccccchHHHHHHHHH---hcCC---------CceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--------ccchhh
Q 038510 150 FMHFESRKSTFKEILDA---LSNR---------DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--------KSHETV 209 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~---l~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~~~~~~ 209 (871)
...+.|.++.+.++.+. +... -.+-+.|+|++|+||||||+.++...... |- ......
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~--~i~i~g~~~~~~~~g~ 107 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP--FITASGSDFVEMFVGV 107 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC--EEEEEGGGGTSSCTTH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--EEEEehhHHHHhhhhh
Confidence 45677888776665544 3221 12348999999999999999999876532 22 100111
Q ss_pred HHHHHHHHHHc---CCcEEEEEecCCCcc------------Ch----hhhccccCC--CCCCcEEEEeecCcchhcc-cc
Q 038510 210 RAGRLLERLKK---EKKILIILDDIWGGL------------DL----EAIGIPLAD--DNSGCKVLLTARSQDVLSC-KM 267 (871)
Q Consensus 210 ~~~~l~~~l~~---~kr~LlvlDdv~~~~------------~~----~~l~~~l~~--~~~gs~iivTtr~~~va~~-~~ 267 (871)
....+...+.. ....++++|++.... .+ ..+...+.. ...+..|+.||...++... ..
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLl 187 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL 187 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccc
Confidence 12223333332 234799999995321 11 122222211 1233446666666554311 11
Q ss_pred ---CCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHHcCCch
Q 038510 268 ---DCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKECAGLP 315 (871)
Q Consensus 268 ---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 315 (871)
.-...+.++..+.++-.+++..++......++ .....|+..+.|..
T Consensus 188 r~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 188 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp STTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred cccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 22357888888988888888776543211111 11334666777764
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.53 E-value=0.0073 Score=72.11 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=52.9
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc--------c----------
Q 038510 152 HFESRKSTFKEILDALSN---------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE--------K---------- 204 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--------~---------- 204 (871)
.++|.++.++.+...+.. .....+.++|++|+|||++|+.+++.... .|- .
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~--~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGGCSSSSCCSSSCCC
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC--CEEEEechhhcchhhHhhhcCC
Confidence 467888888877776641 12347899999999999999999987742 221 0
Q ss_pred ---cchhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 205 ---SHETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 205 ---~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
.........+...+......+++||++...
T Consensus 537 ~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred CCCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 000011122344555456689999999754
No 237
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.33 E-value=0.0052 Score=68.45 Aligned_cols=85 Identities=11% Similarity=0.033 Sum_probs=53.1
Q ss_pred ccccccchHHHHHHHH---HhcCCC--ceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc----------cchhhHHHHH
Q 038510 150 FMHFESRKSTFKEILD---ALSNRD--FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK----------SHETVRAGRL 214 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~---~l~~~~--~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~----------~~~~~~~~~l 214 (871)
...++|.++.++.+.. ++..+. .+-+.++|++|+|||++|+.+++.......|-. ..........
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN 115 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHHHHHH
Confidence 3568899888775544 333332 357889999999999999999998763323331 0111112222
Q ss_pred HHHH---HcCCcEEEEEecCCCc
Q 038510 215 LERL---KKEKKILIILDDIWGG 234 (871)
Q Consensus 215 ~~~l---~~~kr~LlvlDdv~~~ 234 (871)
.+.. ...++.+|++|+++..
T Consensus 116 f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 116 FRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp HHHTEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHhhhhcCCcEEEEechhhc
Confidence 2222 2235789999998643
No 238
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.31 E-value=0.0028 Score=66.35 Aligned_cols=45 Identities=13% Similarity=0.280 Sum_probs=35.2
Q ss_pred ccccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 152 HFESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++|+...+.++.+.+. ......|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 46788888888777665 2333457799999999999999999864
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.27 E-value=0.0046 Score=64.33 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=38.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhccccccc-----------chhhHHHHHHHHH----HcCCcEEEEEecCCC
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKS-----------HETVRAGRLLERL----KKEKKILIILDDIWG 233 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-----------~~~~~~~~l~~~l----~~~kr~LlvlDdv~~ 233 (871)
.+.+.++|++|+|||+||+.+++..... |-.. .....+..+.+.. ...++.+|+||+++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~--~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCC--CEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4578899999999999999999987542 3210 0111122222222 345789999999953
No 240
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.21 E-value=0.0085 Score=61.94 Aligned_cols=60 Identities=22% Similarity=0.361 Sum_probs=39.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-c----------cchhhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-K----------SHETVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~----------~~~~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
.+++.|+|++|+||||||.++......+-.|- . .........+.+.+.+ .+ ++|+|++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~-~~-LLVIDsI~a 193 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ-HR-VIVIDSLKN 193 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH-CS-EEEEECCTT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhh-CC-EEEEecccc
Confidence 35778999999999999999987622211222 1 1223344556666765 44 999999854
No 241
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.01 E-value=0.0063 Score=63.71 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++.+||+|.|-|||||||.|..+.--...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 46799999999999999999888765544
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.91 E-value=0.03 Score=66.80 Aligned_cols=141 Identities=11% Similarity=0.194 Sum_probs=82.1
Q ss_pred ccccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------cc
Q 038510 150 FMHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KS 205 (871)
Q Consensus 150 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~ 205 (871)
...++|.+..++++.+++.. .....|.|+|++|+||||||+.+++.... .|- ..
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~~i~v~~~~l~~~~~g 280 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--FFFLINGPEIMSKLAG 280 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--EEEEEEHHHHSSSSTT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--cEEEEEchHhhhhhhh
Confidence 45577888888777776641 23457999999999999999999876532 222 01
Q ss_pred chhhHHHHHHHHHHcCCcEEEEEecCCCccC-------------hhhhccccCC--CCCCcEEEEeecCcchhcccc---
Q 038510 206 HETVRAGRLLERLKKEKKILIILDDIWGGLD-------------LEAIGIPLAD--DNSGCKVLLTARSQDVLSCKM--- 267 (871)
Q Consensus 206 ~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~-------------~~~l~~~l~~--~~~gs~iivTtr~~~va~~~~--- 267 (871)
........+.+........++++|++..... ...+...+.. ...+-.||.||....-.....
T Consensus 281 ~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~ 360 (806)
T 1ypw_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF 360 (806)
T ss_dssp HHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTST
T ss_pred hHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcc
Confidence 1122334444444445678999999953210 0111111111 122334555555532211111
Q ss_pred -CCcceeeccCCCHHHHHHHHHHHhC
Q 038510 268 -DCQQNFFVDVLNEKEAWSLFRKMTG 292 (871)
Q Consensus 268 -~~~~~~~l~~L~~~~~~~Lf~~~~~ 292 (871)
.-...+.+...+.++-.+++...+.
T Consensus 361 gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 361 GRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccccccccCCCCHHHHHHHHHHHHh
Confidence 2234678888899999999987765
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.76 E-value=0.017 Score=69.64 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHhcC---------CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 152 HFESRKSTFKEILDALSN---------RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++|.+..++.+...+.. .....+.|+|+.|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468988888888776641 1235789999999999999999998763
No 244
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.43 E-value=0.014 Score=56.74 Aligned_cols=42 Identities=17% Similarity=0.314 Sum_probs=33.3
Q ss_pred chHHHHHHHHHhcC---CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 156 RKSTFKEILDALSN---RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 156 r~~~~~~l~~~l~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
|++.++++.+.+.. ....+|+|.|..|+||||+++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 55667777777663 3457999999999999999999987553
No 245
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.31 E-value=0.02 Score=56.11 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcC--CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 158 STFKEILDALSN--RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 158 ~~~~~l~~~l~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+..++|.+.+.. ....+|+|+|+.|.|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666653 4567999999999999999999987665
No 246
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.25 E-value=0.065 Score=53.92 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=28.7
Q ss_pred HHHHHHHhcCC--CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 160 FKEILDALSNR--DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 160 ~~~l~~~l~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..-+..|+... ...-|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34566777643 24579999999999999999999853
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.22 E-value=0.017 Score=60.38 Aligned_cols=42 Identities=29% Similarity=0.454 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhcCC---CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 156 RKSTFKEILDALSNR---DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 156 r~~~~~~l~~~l~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+...++.+.+++... ....+.|+|+.|+|||+||+.+++...
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455555666531 246889999999999999999999776
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.75 E-value=0.018 Score=54.95 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.|.|+|++|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4578999999999999999987643
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.63 E-value=0.12 Score=54.94 Aligned_cols=149 Identities=6% Similarity=-0.111 Sum_probs=93.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----ccchhhHHHHHHHHHH----cCCcEEEEEecCCC-c--cCh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----KSHETVRAGRLLERLK----KEKKILIILDDIWG-G--LDL 237 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----~~~~~~~~~~l~~~l~----~~kr~LlvlDdv~~-~--~~~ 237 (871)
.-.++..++|..|.||++.|+.+....... .|+ ..+.......+.+.+. -+++-++|+|++.. . ..+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~ 94 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAIN 94 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHH
Confidence 346789999999999999999988765432 111 1111223344444332 25678899999865 3 445
Q ss_pred hhhccccCCCCCCcEEEEeecC-------cchhccccCCcceeeccCCCHHHHHHHHHHHhCCCCCCchhHHHHHHHHHH
Q 038510 238 EAIGIPLADDNSGCKVLLTARS-------QDVLSCKMDCQQNFFVDVLNEKEAWSLFRKMTGDCIENGELKSVATEIVKE 310 (871)
Q Consensus 238 ~~l~~~l~~~~~gs~iivTtr~-------~~va~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~~I~~~ 310 (871)
+.+...+..-..++.+|++|.. ..+.......+..++..+++.++..+.+.+.+..... .--.+.++.|++.
T Consensus 95 ~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~ 173 (343)
T 1jr3_D 95 EQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL-ELDDAANQVLCYC 173 (343)
T ss_dssp HHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTC-EECHHHHHHHHHS
T ss_pred HHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Confidence 6665555444457776666543 1232222344578999999999988887776642211 1123567788999
Q ss_pred cCCchhHHHH
Q 038510 311 CAGLPIAIVP 320 (871)
Q Consensus 311 c~GlPLai~~ 320 (871)
++|.+.++..
T Consensus 174 ~~gdl~~~~~ 183 (343)
T 1jr3_D 174 YEGNLLALAQ 183 (343)
T ss_dssp STTCHHHHHH
T ss_pred hchHHHHHHH
Confidence 9998876655
No 250
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.58 E-value=0.12 Score=55.72 Aligned_cols=123 Identities=18% Similarity=0.166 Sum_probs=74.4
Q ss_pred CCCCceEEEecCCCCCccCcccccCCCcceEEEecCCCCCCCC-CccccccCCcEEEecccCCCC--CcccCCCCCccEE
Q 038510 494 ECPQLKYFRIGNDPSLRIPDNFFTGMTGLKVLDFTEMHLLPLP-SSLGLLQNLQTLCLNYCNLGD--IAIIGDLKKLEIL 570 (871)
Q Consensus 494 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~--~~~i~~l~~L~~L 570 (871)
.+.+|+.+.+..+ ...+....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+..+ ++. ...+..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 4556666655432 33455555667777777777554 34333 34556667777776543 333 2345667777777
Q ss_pred EeeCCCccccch-hhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecc
Q 038510 571 SLRGSDVEKLVG-EMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIG 621 (871)
Q Consensus 571 ~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~ 621 (871)
.+.++.++.++. .+.++.+|+.+.+.. .++.++...+.++++|+++.+.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 777666776664 366677777777754 3566666666677777776653
No 251
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.47 E-value=0.037 Score=57.88 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=24.4
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
....++|+|+|-||+||||+|..++.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~ 67 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI 67 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH
Confidence 456789999999999999999998876554
No 252
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.46 E-value=0.034 Score=51.07 Aligned_cols=89 Identities=19% Similarity=0.171 Sum_probs=48.9
Q ss_pred HHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhcc---cc-cccchhhHHHHHHHHHHcCCcEEEEEecCCCccCh--
Q 038510 164 LDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKENN---LF-EKSHETVRAGRLLERLKKEKKILIILDDIWGGLDL-- 237 (871)
Q Consensus 164 ~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F-~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~~~~-- 237 (871)
+..+.+-....++|+|..|+|||||++.+++...... .| +....... .+.. +.-++||||+......
T Consensus 28 ~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------~~~~-~~~lLilDE~~~~~~~~~ 100 (149)
T 2kjq_A 28 VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------DAAF-EAEYLAVDQVEKLGNEEQ 100 (149)
T ss_dssp HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------GGGG-GCSEEEEESTTCCCSHHH
T ss_pred HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------HHHh-CCCEEEEeCccccChHHH
Confidence 3333332557899999999999999999998775422 11 11100000 1122 4568899998664322
Q ss_pred hhhccccCC-CCCCc-EEEEeecC
Q 038510 238 EAIGIPLAD-DNSGC-KVLLTARS 259 (871)
Q Consensus 238 ~~l~~~l~~-~~~gs-~iivTtr~ 259 (871)
+.+...+.. ...|. +||+||+.
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 112111110 11233 48888874
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.45 E-value=0.022 Score=54.06 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999987643
No 254
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.45 E-value=0.022 Score=53.61 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987654
No 255
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.33 E-value=0.027 Score=54.66 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|.|+|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987653
No 256
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.32 E-value=0.026 Score=60.24 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=36.5
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.....++|.+..+..+..........-+.|+|.+|+|||++|+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34556889888666554444333334588999999999999999998664
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.28 E-value=0.021 Score=53.88 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHhHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEV 192 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v 192 (871)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 258
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.25 E-value=0.024 Score=53.97 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998754
No 259
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.19 E-value=0.039 Score=54.65 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 159 TFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 159 ~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+.+...+.......|.|+|.+|+|||||+..+.....
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344444444455678999999999999999999987653
No 260
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.17 E-value=0.056 Score=56.75 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhc----CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 156 RKSTFKEILDALS----NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 156 r~~~~~~l~~~l~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
-+...+++++.+. .+....|.|+|+.|+||||+++.++.....
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3444555555543 455677999999999999999999887654
No 261
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.16 E-value=0.031 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998764
No 262
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.16 E-value=0.028 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999754
No 263
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.05 E-value=0.039 Score=53.59 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=25.1
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.....+|+|+|+.|.||||+|+.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34568999999999999999999987765
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.97 E-value=0.069 Score=55.05 Aligned_cols=29 Identities=21% Similarity=0.086 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
....+|+|+|..|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999998876653
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.92 E-value=0.034 Score=53.08 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+.|.|+|+.|+||||+|+.+.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999987653
No 266
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.91 E-value=0.026 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987644
No 267
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.90 E-value=0.033 Score=52.82 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 268
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.90 E-value=0.042 Score=51.35 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..++++|+|..|+|||||+..+....+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4679999999999999999999876653
No 269
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.90 E-value=0.036 Score=54.68 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 156 RKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 156 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++..+++.+.+.....++|+|+|.+|+|||||+..+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344455555555455688999999999999999999987653
No 270
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.79 E-value=0.024 Score=54.22 Aligned_cols=86 Identities=19% Similarity=0.120 Sum_probs=48.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhhccc----c--c--cc----------------chhhHHHHHHHHHHcCCcEEEEE
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKENNL----F--E--KS----------------HETVRAGRLLERLKKEKKILIIL 228 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F--~--~~----------------~~~~~~~~l~~~l~~~kr~Llvl 228 (871)
.++.|+|+.|+||||++..+......++. | . .. ........+.+.+. ++.-+|++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 57889999999999999666655432211 0 0 00 00001112222222 24569999
Q ss_pred ecCCCc-cChhhhccccCCCCCCcEEEEeecCcc
Q 038510 229 DDIWGG-LDLEAIGIPLADDNSGCKVLLTARSQD 261 (871)
Q Consensus 229 Ddv~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~ 261 (871)
|.+... .+|......+.+. |..|++|.+...
T Consensus 83 DE~Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 83 DEVQFFNPSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp CCGGGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred ECcccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 999765 3455443333232 677998887543
No 271
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.75 E-value=0.075 Score=62.44 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=55.9
Q ss_pred cccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhccccc-----------ccc
Q 038510 151 MHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFE-----------KSH 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-----------~~~ 206 (871)
..+.|-++.++++.+.+.- ...+-|.++|++|.|||.+|+++++..... |- ...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~--f~~v~~~~l~s~~vGe 554 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGE 554 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE--EEECCHHHHHTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc--eEEeccchhhccccch
Confidence 3456777777777665431 123457899999999999999999977642 32 111
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
....+..+.+..++..++.|++|+++.
T Consensus 555 se~~vr~lF~~Ar~~~P~IifiDEiDs 581 (806)
T 3cf2_A 555 SEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp CHHHHHHHHHHHHTTCSEEEECSCGGG
T ss_pred HHHHHHHHHHHHHHcCCceeechhhhH
Confidence 234456666666666789999999864
No 272
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.69 E-value=0.066 Score=56.90 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=55.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhc--cccc----------------------ccchhhHHHHHHHHHHcCCcEEE
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKEN--NLFE----------------------KSHETVRAGRLLERLKKEKKILI 226 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~----------------------~~~~~~~~~~l~~~l~~~kr~Ll 226 (871)
...+++|+|+.|.||||+.+.+....... .+.- ..........+...|. ..+=+|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~-~~Pdvi 200 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR-EDPDII 200 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT-SCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh-hCcCEE
Confidence 34599999999999999999987654432 1110 0001112334555555 467788
Q ss_pred EEecCCCccChhhhccccCCCCCCcEEEEeecCcchh
Q 038510 227 ILDDIWGGLDLEAIGIPLADDNSGCKVLLTARSQDVL 263 (871)
Q Consensus 227 vlDdv~~~~~~~~l~~~l~~~~~gs~iivTtr~~~va 263 (871)
++|++-+.+.++.+... ...|.-|++||.....+
T Consensus 201 llDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred ecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 99999876655543332 12355688888876653
No 273
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.63 E-value=0.043 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|.|.|+.|+||||+|+.+.....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999988765
No 274
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.53 E-value=0.044 Score=53.57 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45799999999999999999998654
No 275
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.53 E-value=0.044 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|+|||||++.+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999865
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.51 E-value=0.054 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998654
No 277
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.51 E-value=0.034 Score=54.04 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|+.|+||||+|+.+.....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 278
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.49 E-value=0.13 Score=55.87 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.++|.+|+||||++..++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999998876654
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.47 E-value=0.042 Score=52.25 Aligned_cols=26 Identities=38% Similarity=0.493 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++|.|+|++|+||||+|+.+.....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987653
No 280
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.46 E-value=0.047 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|.|+|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 5789999999999999999987543
No 281
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.43 E-value=0.048 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999988665
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.41 E-value=0.054 Score=52.02 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987653
No 283
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.39 E-value=0.046 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 284
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.37 E-value=0.043 Score=58.09 Aligned_cols=44 Identities=18% Similarity=0.247 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 152 HFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++|+++.++.+...+..+ .-+.++|++|+|||+||+.+.+...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4778988888887777653 3678999999999999999988654
No 285
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.36 E-value=0.041 Score=53.58 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998765
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.35 E-value=0.037 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999987553
No 287
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.34 E-value=0.063 Score=51.28 Aligned_cols=28 Identities=21% Similarity=0.309 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.|.|++|+||||+++.+......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999887654
No 288
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.31 E-value=0.049 Score=51.08 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|+|.|+.|+||||+|+.+......
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4679999999999999999999876543
No 289
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.29 E-value=0.077 Score=56.95 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=35.5
Q ss_pred cccchHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 153 FESRKSTFKEILDALS-------------N--RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 153 ~~gr~~~~~~l~~~l~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5788888888877762 1 1345789999999999999999998764
No 290
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.28 E-value=0.054 Score=51.37 Aligned_cols=25 Identities=40% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++|+|+.|+|||||++.++....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987653
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.27 E-value=0.05 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987644
No 292
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.22 E-value=0.053 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999997654
No 293
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.22 E-value=0.042 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=19.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVG 193 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~ 193 (871)
...+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999744
No 294
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.20 E-value=0.086 Score=54.50 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++|+|.|-||+||||+|..++.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 478899999999999999998876553
No 295
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.19 E-value=0.082 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.641 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|.|-||+||||+|..++.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~ 27 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA 27 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH
Confidence 68888999999999999998876654
No 296
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.16 E-value=0.046 Score=51.69 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999987654
No 297
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.13 E-value=0.058 Score=51.85 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998654
No 298
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.11 E-value=0.042 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998754
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.11 E-value=0.061 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.09 E-value=0.056 Score=52.45 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999988654
No 301
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.93 E-value=0.063 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.334 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999999875
No 302
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.92 E-value=0.072 Score=51.67 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998754
No 303
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.92 E-value=0.18 Score=53.72 Aligned_cols=38 Identities=24% Similarity=0.466 Sum_probs=29.3
Q ss_pred HHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 160 FKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 160 ~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..++++.+. .++..+|+|+|.+|+|||||+..+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344555454 45678999999999999999999886654
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.91 E-value=0.06 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999987653
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.91 E-value=0.066 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|+.|+||||+|+.+.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 306
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.90 E-value=0.098 Score=53.07 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357888999999999999999886554
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.90 E-value=0.1 Score=53.79 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 308
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.87 E-value=0.095 Score=56.53 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+.++|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998764
No 309
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.82 E-value=0.064 Score=52.29 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998875
No 310
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.81 E-value=0.24 Score=52.29 Aligned_cols=36 Identities=19% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHhc-CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 162 EILDALS-NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 162 ~l~~~l~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++++.+. -.....++|+|.+|+|||||++.+.+...
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4555554 34457999999999999999999887543
No 311
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.81 E-value=0.11 Score=54.24 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|+|+|.+|+||||++..++.....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998876553
No 312
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.80 E-value=0.057 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 313
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.78 E-value=0.049 Score=51.92 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999987644
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.74 E-value=0.069 Score=55.72 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|+|+|..|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4467999999999999999999987654
No 315
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.70 E-value=0.067 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34699999999999999999988643
No 316
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.70 E-value=0.16 Score=45.24 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=7.2
Q ss_pred EEEecCCCCC--CCCC
Q 038510 524 VLDFTEMHLL--PLPS 537 (871)
Q Consensus 524 ~L~l~~~~i~--~lp~ 537 (871)
+++.+++.++ .+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~ 27 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT 27 (130)
T ss_dssp EEECCSSCCCTTTSCS
T ss_pred EEEeCCCCCccccCCC
Confidence 4455555555 5554
No 317
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.69 E-value=0.18 Score=55.08 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
-+.++|+|.+|+|||||++.+......
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 347899999999999999999876553
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.69 E-value=0.076 Score=51.01 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999887543
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.68 E-value=0.073 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998763
No 320
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.66 E-value=0.18 Score=44.86 Aligned_cols=54 Identities=19% Similarity=0.312 Sum_probs=33.6
Q ss_pred EEEeeCCCcc--ccchhhcCCCCCCEEeCCCCCCCCccChhhhhCCCCCcEEecccCCC
Q 038510 569 ILSLRGSDVE--KLVGEMGQLTQLRLLDLSKCFELKVIPPNVISSLSRLEELYIGESPI 625 (871)
Q Consensus 569 ~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~~p~~~i~~L~~L~~L~l~~~~~ 625 (871)
+++.+++.++ .+|.. -..+|++|+|++| .++.+|.+.+..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4555555665 66643 2245677777765 56666666666677777777776654
No 321
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.65 E-value=0.25 Score=54.96 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhhcccccccchhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEKSHETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
..++|+|+|.+|+||||++..+......+ +++.++|=.|....
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~---------------------G~kVllVd~D~~r~ 142 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK---------------------GWKTCLICADTFRA 142 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT---------------------TCCEEEEEECCSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---------------------CCeEEEEeccccch
Confidence 35799999999999999999988665532 67888887776544
No 322
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.64 E-value=0.14 Score=52.97 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+++++|.+|+||||++..++....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999987665
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.62 E-value=0.077 Score=50.59 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.+.|+.|+||||+|+.+.....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987553
No 324
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.61 E-value=0.2 Score=54.68 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..++|.++|.+|+||||++..++.....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999998876654
No 325
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.60 E-value=0.13 Score=53.44 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|+|+|.+|+||||++..++.....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 3579999999999999999999876653
No 326
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.57 E-value=0.084 Score=48.86 Aligned_cols=27 Identities=30% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
....+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445799999999999999999998765
No 327
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.56 E-value=0.076 Score=53.40 Aligned_cols=26 Identities=19% Similarity=0.271 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|+|+|+.|+||||+++.+.....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999999996553
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.56 E-value=0.082 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+|.|.|+.|+||||+|+.+......
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 358999999999999999999886543
No 329
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.54 E-value=0.06 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|+|||||++.+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998764
No 330
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.53 E-value=0.06 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|.|.|+.|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987654
No 331
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.46 E-value=0.07 Score=51.49 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|+|.|+.|+||||+|+.+.....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988654
No 332
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.43 E-value=0.09 Score=54.56 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+++|+|++|+||||+++.++.-...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4579999999999999999999876654
No 333
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.42 E-value=0.061 Score=51.15 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987644
No 334
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=92.38 E-value=0.071 Score=59.40 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=36.0
Q ss_pred ccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 152 HFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++|+++.++.+...+..+ .-|.++|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4678888888887776643 3678999999999999999998664
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.35 E-value=0.12 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|+|.|..|+||||+|+.+..-..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456999999999999999999876544
No 336
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.34 E-value=0.057 Score=50.77 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++++|+|..|+|||||++.+..-...
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 368999999999999999999876654
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.33 E-value=0.075 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 338
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.33 E-value=0.087 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999998754
No 339
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.32 E-value=0.08 Score=52.08 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+++|+|+.|+|||||.+.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356999999999999999999987654
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.29 E-value=0.082 Score=50.66 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987643
No 341
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.28 E-value=0.13 Score=54.33 Aligned_cols=31 Identities=35% Similarity=0.439 Sum_probs=25.5
Q ss_pred hcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 167 LSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 167 l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+.+...+++.+.|.||+||||+|..++....
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la 43 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLA 43 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3355678999999999999999999887655
No 342
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.26 E-value=0.086 Score=53.22 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|+|+|+.|+||||+++.+.....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356999999999999999999997654
No 343
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.24 E-value=0.084 Score=49.34 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987654
No 344
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.21 E-value=0.17 Score=53.01 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
....+++|+|+.|+||||+++.+....+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34689999999999999999999876654
No 345
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.17 E-value=0.24 Score=53.80 Aligned_cols=28 Identities=29% Similarity=0.223 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.++|.+|+||||++..++.....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999998876654
No 346
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.16 E-value=0.11 Score=50.97 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...++|.|.|++|+||||.|+.+.....
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999988654
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.13 E-value=0.09 Score=50.93 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|.|.|+.|+||||+|+.+.....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987654
No 348
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.12 E-value=0.11 Score=49.03 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++++|+|..|+|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57999999999999999999987654
No 349
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.12 E-value=0.26 Score=52.16 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
-+++.|+|++|+||||||.++.....
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999987754
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.00 E-value=0.1 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.-.+|+|.|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999875
No 351
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.99 E-value=0.1 Score=51.45 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...|.|.|+.|+||||+|+.+.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999987654
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.99 E-value=0.096 Score=50.24 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.96 E-value=0.13 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999987653
No 354
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.91 E-value=0.11 Score=50.84 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+|+|.|+.|+||||+|+.+......
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999876543
No 355
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.89 E-value=0.057 Score=52.91 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|+|.|..|+||||+|+.+.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999987654
No 356
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.88 E-value=0.11 Score=50.78 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+|.|.|+.|+||||+|+.+......
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999876543
No 357
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.81 E-value=0.2 Score=50.16 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|.|.|+.|+||||+|+.+.....
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999987653
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.77 E-value=0.1 Score=52.60 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999987644
No 359
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.75 E-value=0.095 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999987665
No 360
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.71 E-value=0.16 Score=53.42 Aligned_cols=31 Identities=35% Similarity=0.426 Sum_probs=25.2
Q ss_pred cCCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 168 SNRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 168 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.+...+++.+.|-||+||||+|..++.....
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~ 42 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK 42 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 3455678888999999999999998876654
No 361
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.69 E-value=0.15 Score=48.91 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=40.5
Q ss_pred HHHHHHHhcC-CCceEEEEEcCCCCcHhHHHHHHHHHHhhc-ccccccchhhHHHHHHHHHHcCCcEEEEEecCCCc
Q 038510 160 FKEILDALSN-RDFNMIGVYGMGGIGKTTLVKEVGRQAKEN-NLFEKSHETVRAGRLLERLKKEKKILIILDDIWGG 234 (871)
Q Consensus 160 ~~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~~~~~~~~l~~~l~~~kr~LlvlDdv~~~ 234 (871)
+..+..++.. +....+.|+|++|+||||+|..+++....+ ..|....... ..+.+. +.+ ++||||+...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f----~l~~l~-~~k-IiiLDEad~~ 115 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHF----WLEPLT-DTK-VAMLDDATTT 115 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCG----GGGGGT-TCS-SEEEEEECHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchh----hhcccC-CCC-EEEEECCCch
Confidence 4455555543 223479999999999999999999876532 1232111100 011222 233 8899998643
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.67 E-value=0.13 Score=50.22 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999987655
No 363
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.66 E-value=0.11 Score=60.02 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=39.2
Q ss_pred CCccccccchHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 148 QDFMHFESRKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.....++|.+..++.+...+..+ ..+.|+|+.|+||||||+.++....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34456889988888887777655 5889999999999999999998653
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.65 E-value=0.1 Score=51.75 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...|.|.|+.|+||||+|+.+.....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987543
No 365
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.58 E-value=0.11 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 366
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.51 E-value=0.12 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 367
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.49 E-value=0.18 Score=48.83 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=21.6
Q ss_pred eEEEEE-cCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVY-GMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~-G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+ +-||+||||+|..++.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~ 28 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR 28 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 678888 68999999999998876554
No 368
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.47 E-value=0.1 Score=51.39 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...|.|.|+.|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999987664
No 369
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.45 E-value=0.31 Score=50.36 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+++++|.+|+||||++..++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998876553
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.43 E-value=0.11 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|+|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 371
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.42 E-value=0.14 Score=53.02 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999876654
No 372
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.41 E-value=0.11 Score=51.98 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.. .+++|+|+.|.|||||.+.+..-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 79999999999999999998854
No 373
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.38 E-value=0.2 Score=51.71 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+++|+|.+|+||||++..++.....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999876553
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.34 E-value=0.092 Score=52.75 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987544
No 375
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.24 E-value=0.11 Score=51.45 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
-.+++|+|+.|+|||||++.++....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47999999999999999999986443
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.23 E-value=0.12 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997654
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.18 E-value=0.13 Score=49.90 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998754
No 378
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=91.18 E-value=0.14 Score=51.38 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
|+|.|-||+||||+|..+......
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~ 26 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS 26 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Confidence 677999999999999999876654
No 379
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.17 E-value=0.057 Score=64.34 Aligned_cols=81 Identities=15% Similarity=0.298 Sum_probs=53.6
Q ss_pred cccccchHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHhHHHHHHHHHHhhcccccc-----------cc
Q 038510 151 MHFESRKSTFKEILDALSN-------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKENNLFEK-----------SH 206 (871)
Q Consensus 151 ~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------~~ 206 (871)
..+.|.++.++++.+.+.- ...+.+.++|++|+||||||+.+++..... |-. ..
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~--~i~v~~~~l~~~~~g~ 554 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISIKGPELLTMWFGE 554 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC--CCCCCCSSSTTCCTTT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC--EEEEechHhhhhhcCc
Confidence 4466777777877776541 123568899999999999999999887532 320 01
Q ss_pred hhhHHHHHHHHHHcCCcEEEEEecCCC
Q 038510 207 ETVRAGRLLERLKKEKKILIILDDIWG 233 (871)
Q Consensus 207 ~~~~~~~l~~~l~~~kr~LlvlDdv~~ 233 (871)
.......+.+........++++|++..
T Consensus 555 ~~~~i~~~f~~a~~~~p~vl~iDEid~ 581 (806)
T 1ypw_A 555 SEANVREIFDKARQAAPCVLFFDELDS 581 (806)
T ss_dssp SSHHHHHHHHHHHHHCSBCCCCSSHHH
T ss_pred cHHHHHHHHHHHHhcCCeEEEEEChhh
Confidence 123344455555444567999999854
No 380
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.17 E-value=0.13 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+|+|.|+.|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999987653
No 381
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.15 E-value=0.29 Score=48.96 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..++.|.|.+|+|||++|.+++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999987654
No 382
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.13 E-value=0.1 Score=50.82 Aligned_cols=24 Identities=29% Similarity=0.232 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999876
No 383
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.12 E-value=0.11 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
..+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46999999999999999999884
No 384
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.10 E-value=0.12 Score=51.44 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||.+.+..-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3469999999999999999998753
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.08 E-value=0.14 Score=50.18 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.07 E-value=0.14 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987654
No 387
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.03 E-value=0.13 Score=53.55 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+|+|+|..|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999987544
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.02 E-value=0.26 Score=54.22 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+++|+|..|+|||||++.+....+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3579999999999999999999876553
No 389
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=90.98 E-value=0.45 Score=50.20 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.2
Q ss_pred HHHHHHhcC-CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 161 KEILDALSN-RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 161 ~~l~~~l~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
-++++.+.. ...+.++|+|.+|+|||+|++++.+...
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 356666652 4457899999999999999999988654
No 390
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.89 E-value=0.13 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.627 Sum_probs=21.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVG 193 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~ 193 (871)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999987
No 391
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.87 E-value=0.14 Score=55.72 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=35.1
Q ss_pred ccccchHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 152 HFESRKSTFKEILDALSN--------------RDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 152 ~~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++.....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 467888777777655521 12456889999999999999999987643
No 392
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.86 E-value=0.09 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHH-HHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVG-RQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 196 (871)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 543
No 393
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.80 E-value=0.1 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999998753
No 394
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.79 E-value=0.15 Score=55.70 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..+|+|+|.+|+||||+|..+......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999998876653
No 395
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.75 E-value=0.16 Score=48.66 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=43.1
Q ss_pred cCCCcceEEEecCC-CCCC-----CCCccccccCCcEEEecccCCCCC------cccCCCCCccEEEeeCCCcc-----c
Q 038510 517 TGMTGLKVLDFTEM-HLLP-----LPSSLGLLQNLQTLCLNYCNLGDI------AIIGDLKKLEILSLRGSDVE-----K 579 (871)
Q Consensus 517 ~~l~~Lr~L~l~~~-~i~~-----lp~~i~~l~~Lr~L~L~~~~i~~~------~~i~~l~~L~~L~l~~~~i~-----~ 579 (871)
.+-..|+.|+|+++ .|.. +-+.+..-.+|+.|+|++|.+++. ..+..=..|++|+|++|.|. .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34456666666664 4431 222333445667777777666541 22333455666666666654 2
Q ss_pred cchhhcCCCCCCEEeCCCC
Q 038510 580 LVGEMGQLTQLRLLDLSKC 598 (871)
Q Consensus 580 lp~~i~~L~~L~~L~l~~~ 598 (871)
+-..+..-+.|++|++++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 2233444455666666543
No 396
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.69 E-value=0.12 Score=51.42 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||++.+..-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998753
No 397
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.68 E-value=0.25 Score=48.26 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.|.+.|.||+||||+|..+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4778999999999999888876654
No 398
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.68 E-value=0.26 Score=52.96 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCceEEEEEc-CCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYG-MGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G-~gGiGKTtLa~~v~~~~~ 197 (871)
.+.++|+|+| -||+||||+|..++....
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La 169 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA 169 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHH
Confidence 4578999985 999999999998886554
No 399
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.64 E-value=0.37 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+++.|+|.+|+||||||.++.....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999886654
No 400
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.59 E-value=0.16 Score=49.29 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999987654
No 401
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.48 E-value=0.13 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||.+.+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3569999999999999999998753
No 402
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.46 E-value=0.16 Score=52.72 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999987643
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.43 E-value=0.2 Score=53.14 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+++|+|+.|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3569999999999999999999876654
No 404
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.38 E-value=0.12 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
+..+|+|.|..|+||||+|+.+.....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999887543
No 405
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.37 E-value=0.48 Score=48.23 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.0
Q ss_pred CCCceEEEEEcC-CCCcHhHHHHHHHHHHhh
Q 038510 169 NRDFNMIGVYGM-GGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 169 ~~~~~vi~I~G~-gGiGKTtLa~~v~~~~~~ 198 (871)
+...++|.|+|. ||+||||+|..++.....
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~ 109 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAYAQ 109 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence 456789999975 899999999988865543
No 406
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.32 E-value=0.15 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999863
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.27 E-value=0.16 Score=49.73 Aligned_cols=23 Identities=39% Similarity=0.390 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
..++.|+|.+|+||||||..+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999986
No 408
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.23 E-value=0.55 Score=48.27 Aligned_cols=24 Identities=8% Similarity=-0.086 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++-|.|.+|+||||||.++.....
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 789999999999999988876654
No 409
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.23 E-value=0.14 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||++.+..-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999998753
No 410
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.23 E-value=0.14 Score=51.82 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||++.++.-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4569999999999999999998753
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.22 E-value=0.18 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987653
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.20 E-value=0.17 Score=49.62 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..|.|.|+.|+||||+|+.+.....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999987664
No 413
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.18 E-value=0.17 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3469999999999999999999864
No 414
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.17 E-value=0.18 Score=49.42 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.|.|.|+.|+||||+|+.+.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 415
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.17 E-value=0.15 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|.|||||.+.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45799999999999999999987543
No 416
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.13 E-value=0.17 Score=51.98 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998654
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.07 E-value=0.21 Score=49.68 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...|.|.|+.|+||||+|+.+......
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999987653
No 418
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.05 E-value=0.14 Score=51.24 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||.+.++.-
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998754
No 419
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.01 E-value=0.14 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||.+.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998754
No 420
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.00 E-value=0.17 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999988643
No 421
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.00 E-value=0.18 Score=52.05 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
+...+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445799999999999999999998654
No 422
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.93 E-value=0.12 Score=50.57 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||.+.++.-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998754
No 423
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.92 E-value=0.14 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||.+.++.-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999998754
No 424
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.91 E-value=0.16 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||++.+..-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3469999999999999999998854
No 425
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=89.89 E-value=0.22 Score=50.29 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=23.1
Q ss_pred CCceEEEEE-cCCCCcHhHHHHHHHHHHhh
Q 038510 170 RDFNMIGVY-GMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 170 ~~~~vi~I~-G~gGiGKTtLa~~v~~~~~~ 198 (871)
...++|+|+ +-||+||||+|..++.....
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 33 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLAR 33 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 346789998 68899999999998876653
No 426
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.86 E-value=0.14 Score=51.29 Aligned_cols=25 Identities=40% Similarity=0.537 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..+++|+|+.|.|||||++.+..-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999987543
No 427
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.84 E-value=0.21 Score=50.57 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+++|+|+.|+|||||++.+..-..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4457999999999999999999887543
No 428
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.84 E-value=0.21 Score=48.50 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
+|.|.|++|+||||.|+.+......
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5789999999999999999886543
No 429
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.82 E-value=0.16 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||.+.++.-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999998754
No 430
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.82 E-value=0.16 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||++.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3469999999999999999998753
No 431
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.76 E-value=0.16 Score=51.70 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|.|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987643
No 432
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.76 E-value=0.21 Score=45.83 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998754
No 433
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.76 E-value=0.21 Score=49.41 Aligned_cols=26 Identities=23% Similarity=0.164 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+++|+|.+|+|||||++.+.....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999986543
No 434
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=89.74 E-value=0.52 Score=49.97 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.+++.|.|.+|+||||||.++.....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 435
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=89.73 E-value=0.58 Score=48.39 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCCceEEEEEcC-CCCcHhHHHHHHHHHHhh
Q 038510 169 NRDFNMIGVYGM-GGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 169 ~~~~~vi~I~G~-gGiGKTtLa~~v~~~~~~ 198 (871)
+...++|.|+|. ||+||||+|..++.....
T Consensus 101 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~ 131 (299)
T 3cio_A 101 ETENNILMITGATPDSGKTFVSSTLAAVIAQ 131 (299)
T ss_dssp SCSCCEEEEEESSSSSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCChHHHHHHHHHHHHh
Confidence 456789999985 899999999988866543
No 436
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.64 E-value=0.21 Score=51.25 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..++|.|+|+.|+||||||..++....
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999987643
No 437
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.64 E-value=0.33 Score=52.59 Aligned_cols=28 Identities=32% Similarity=0.335 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...++.++|.+|+||||++..++.....
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999876654
No 438
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.46 E-value=0.18 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999998753
No 439
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.37 E-value=0.16 Score=50.88 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||.+.++.-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998754
No 440
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.36 E-value=0.36 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.175 Sum_probs=21.3
Q ss_pred eEEEEEcC-CCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGM-GGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~-gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|.|. ||+||||+|..++.....
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~ 28 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKA 28 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57888875 899999999998876654
No 441
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.36 E-value=0.23 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.++|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999998754
No 442
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=89.30 E-value=0.35 Score=51.36 Aligned_cols=28 Identities=36% Similarity=0.372 Sum_probs=21.7
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....++...|-||+||||+|..++....
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA 43 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMA 43 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 3345666679999999999998887655
No 443
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.27 E-value=0.39 Score=45.86 Aligned_cols=112 Identities=14% Similarity=0.135 Sum_probs=65.4
Q ss_pred ccccCCcEEEeccc-CCCC--C----cccCCCCCccEEEeeCCCcc-----ccchhhcCCCCCCEEeCCCCCCCCccCh-
Q 038510 540 GLLQNLQTLCLNYC-NLGD--I----AIIGDLKKLEILSLRGSDVE-----KLVGEMGQLTQLRLLDLSKCFELKVIPP- 606 (871)
Q Consensus 540 ~~l~~Lr~L~L~~~-~i~~--~----~~i~~l~~L~~L~l~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~~p~- 606 (871)
.+-..|++|+|+++ .|.+ . ..+..=..|+.|+|++|.+. .+-..+..-+.|++|+++.| .++.--.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHH
Confidence 34567889999885 6754 1 34556677889999888776 33344556678888888887 3332110
Q ss_pred ---hhhhCCCCCcEEecccCCC-CccccccccchhcccchhhhccCCCCCeEEEee
Q 038510 607 ---NVISSLSRLEELYIGESPI-QWGTVEGLDSERRNASLHELNHLSKLTSLEILI 658 (871)
Q Consensus 607 ---~~i~~L~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~ 658 (871)
..+..=+.|++|+++++.. ... ..........|..=+.|+.|++..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig------~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLG------NQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCC------HHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcC------HHHHHHHHHHHHhCCCcCeEeccC
Confidence 0123335688888865432 111 111112234455556677777654
No 444
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.22 E-value=0.22 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998864
No 445
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.21 E-value=0.4 Score=45.67 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 446
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.21 E-value=0.2 Score=50.94 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
.++|+|..|+|||||.+.++.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999997654
No 447
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.19 E-value=0.17 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..+++|+|+.|.|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998753
No 448
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.16 E-value=0.23 Score=46.10 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHhHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999874
No 449
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.16 E-value=0.17 Score=51.73 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|.|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987543
No 450
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.13 E-value=0.22 Score=51.69 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 451
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=89.11 E-value=0.29 Score=50.72 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=21.4
Q ss_pred ceEEEEEc---CCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYG---MGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G---~gGiGKTtLa~~v~~~~~~ 198 (871)
.++|+|++ -||+||||+|..++.....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~ 63 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK 63 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh
Confidence 45777775 9999999999998865543
No 452
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.02 E-value=0.2 Score=49.94 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..++.|+|.+|+|||||++.+....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4699999999999999999998653
No 453
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.98 E-value=0.69 Score=44.02 Aligned_cols=48 Identities=21% Similarity=0.155 Sum_probs=29.1
Q ss_pred HHHHHHcCCcEEEEEecCCCc-----cChhhhccccCCCCCCcEEEEeecCcc
Q 038510 214 LLERLKKEKKILIILDDIWGG-----LDLEAIGIPLADDNSGCKVLLTARSQD 261 (871)
Q Consensus 214 l~~~l~~~kr~LlvlDdv~~~-----~~~~~l~~~l~~~~~gs~iivTtr~~~ 261 (871)
..+.+..++-=|||||++-.. ...+++...+.......-||+|+|...
T Consensus 112 a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 112 GKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 444444445559999998432 334444444444445567999999953
No 454
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.92 E-value=0.39 Score=50.41 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
.++.+.|.||+||||+|..++.....
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~ 40 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMAR 40 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHH
Confidence 55666799999999999998876553
No 455
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.82 E-value=0.45 Score=50.45 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..++.+.|.||+||||+|..++.....
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~ 52 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAE 52 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHH
Confidence 445556799999999999988876554
No 456
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.81 E-value=0.31 Score=48.20 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+|.|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999987753
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.76 E-value=0.25 Score=52.76 Aligned_cols=28 Identities=21% Similarity=0.006 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
....+++|+|+.|.|||||++.+.....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4557999999999999999999997543
No 458
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.74 E-value=0.21 Score=47.45 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHhHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~ 194 (871)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999875
No 459
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.73 E-value=0.21 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..++.|+|.+|+|||||+..+....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998643
No 460
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.71 E-value=0.29 Score=50.58 Aligned_cols=28 Identities=29% Similarity=0.289 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
...+++|+|.+|+|||||++.++.....
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999876553
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.69 E-value=0.3 Score=48.59 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|+|.|+.|+||||+++.+.....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987654
No 462
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.64 E-value=0.45 Score=49.98 Aligned_cols=30 Identities=33% Similarity=0.397 Sum_probs=23.3
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
++...++.+.|-||+||||+|..++.....
T Consensus 16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~ 45 (329)
T 2woo_A 16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSK 45 (329)
T ss_dssp CTTCCEEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHH
Confidence 344566677899999999999998876654
No 463
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=88.58 E-value=0.26 Score=52.58 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=20.9
Q ss_pred eEEEEE-cCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVY-GMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~-G~gGiGKTtLa~~v~~~~~ 197 (871)
++|+|+ |-||+||||+|..++....
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA 27 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFA 27 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHH
Confidence 678887 7999999999998886554
No 464
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=88.55 E-value=0.46 Score=47.89 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred eEEEEE-cCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVY-GMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~-G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+ +-||+||||+|..++.....
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~ 29 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQ 29 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence 678886 57889999999998876654
No 465
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.50 E-value=0.23 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.+++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998754
No 466
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.44 E-value=0.24 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHhHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 467
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.36 E-value=0.72 Score=49.06 Aligned_cols=26 Identities=35% Similarity=0.373 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..++.|.|.+|+||||||.++.....
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 46899999999999999999887654
No 468
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.35 E-value=0.46 Score=52.77 Aligned_cols=45 Identities=9% Similarity=-0.108 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHhc--CCCceEEEEEcCCCCcHhHHHHHHHHHHhh
Q 038510 154 ESRKSTFKEILDALS--NRDFNMIGVYGMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 154 ~gr~~~~~~l~~~l~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 198 (871)
..|.+..+.+.+... .....+|.+.|+.|+||||+|+.+......
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 355555555555542 234578999999999999999999988764
No 469
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.25 E-value=0.2 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 45799999999999999999987533
No 470
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.24 E-value=0.27 Score=45.50 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
--|.|+|.+|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 471
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.19 E-value=0.51 Score=47.05 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=22.4
Q ss_pred CceEEEEEc-CCCCcHhHHHHHHHHHHhh
Q 038510 171 DFNMIGVYG-MGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 171 ~~~vi~I~G-~gGiGKTtLa~~v~~~~~~ 198 (871)
..++|+|+| -||+||||+|..++.....
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~ 31 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQ 31 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHh
Confidence 457888884 6899999999998876553
No 472
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.19 E-value=0.22 Score=50.39 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
-.+++|+|+.|.|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998754
No 473
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.16 E-value=0.3 Score=52.18 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
++|.|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999987653
No 474
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=88.15 E-value=0.84 Score=46.74 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=24.0
Q ss_pred CCCceEEEEEc-CCCCcHhHHHHHHHHHHhh
Q 038510 169 NRDFNMIGVYG-MGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 169 ~~~~~vi~I~G-~gGiGKTtLa~~v~~~~~~ 198 (871)
+...++|.|+| .||+||||+|..++.....
T Consensus 89 ~~~~kvI~vts~kgG~GKTtva~nLA~~lA~ 119 (286)
T 3la6_A 89 QAQNNVLMMTGVSPSIGMTFVCANLAAVISQ 119 (286)
T ss_dssp TTTCCEEEEEESSSSSSHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHHHh
Confidence 45678999887 5899999999998876553
No 475
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.14 E-value=0.2 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999988753
No 476
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.06 E-value=0.28 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|.|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34699999999999999999998643
No 477
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.00 E-value=0.27 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
-.|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36889999999999999999864
No 478
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.00 E-value=0.31 Score=52.64 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999986
No 479
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.98 E-value=0.49 Score=46.01 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEE-cCCCCcHhHHHHHHHHHHhh
Q 038510 174 MIGVY-GMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 174 vi~I~-G~gGiGKTtLa~~v~~~~~~ 198 (871)
+|+|+ +-||+||||+|..++.....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~ 27 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLAL 27 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHh
Confidence 56775 78999999999999876654
No 480
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.92 E-value=0.25 Score=50.80 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|.|||||.+.+..-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3569999999999999999998753
No 481
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=87.90 E-value=0.3 Score=51.72 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|.|||||.+.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45699999999999999999988543
No 482
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=87.88 E-value=0.45 Score=48.85 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.4
Q ss_pred eEEEEE-cCCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVY-GMGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~-G~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+ +-||+||||+|..++.....
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~ 31 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLY 31 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 578887 68999999999999876654
No 483
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.80 E-value=0.3 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGR 194 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~ 194 (871)
-+.|.|.|+.|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988763
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.76 E-value=0.35 Score=48.30 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999998754
No 485
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.63 E-value=0.32 Score=46.06 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
..|+++|.+|+|||||.+.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998753
No 486
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.62 E-value=0.48 Score=48.01 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCCceEEEEE-cCCCCcHhHHHHHHHHHHh
Q 038510 169 NRDFNMIGVY-GMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 169 ~~~~~vi~I~-G~gGiGKTtLa~~v~~~~~ 197 (871)
....++|+|+ |-||+||||+|..++....
T Consensus 24 ~~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 24 NKKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp --CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 3457888885 6889999999999887665
No 487
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=87.51 E-value=0.33 Score=44.67 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHhHHHHHHHHH
Q 038510 175 IGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 175 i~I~G~gGiGKTtLa~~v~~~ 195 (871)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999998764
No 488
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.43 E-value=0.75 Score=48.58 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.8
Q ss_pred CCCceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 169 NRDFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 169 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
..+..+|+|+|.+|+||||++..+.....
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999886554
No 489
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=87.40 E-value=0.61 Score=46.19 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=21.0
Q ss_pred eEEEEEc-CCCCcHhHHHHHHHHHHhh
Q 038510 173 NMIGVYG-MGGIGKTTLVKEVGRQAKE 198 (871)
Q Consensus 173 ~vi~I~G-~gGiGKTtLa~~v~~~~~~ 198 (871)
++|+|+| -||+||||+|..++.....
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~ 29 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGD 29 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 5788875 7899999999998876653
No 490
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.39 E-value=0.3 Score=51.60 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
...+++|+|+.|+|||||.+.++.-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999999854
No 491
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.39 E-value=0.32 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.-|+|+|.+|+|||||.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999998764
No 492
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=87.34 E-value=0.93 Score=49.05 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=23.0
Q ss_pred CCceEEEEE-cCCCCcHhHHHHHHHHHHh
Q 038510 170 RDFNMIGVY-GMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 170 ~~~~vi~I~-G~gGiGKTtLa~~v~~~~~ 197 (871)
...++|+|+ |-||+||||+|..++....
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHH
Confidence 356888887 7899999999998887654
No 493
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.32 E-value=0.36 Score=46.69 Aligned_cols=36 Identities=19% Similarity=0.122 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHH
Q 038510 160 FKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 160 ~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
.+.+.+.....+.-.|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 18 GSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 334434333444567899999999999999888754
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=87.31 E-value=0.49 Score=53.28 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHHh
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQAK 197 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 197 (871)
...+|+|+|+.|+|||||++.+.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457999999999999999999998765
No 495
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.28 E-value=0.34 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 171 DFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 171 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
...+++|+|+.|.|||||.+.++.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34699999999999999999998543
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=87.27 E-value=0.33 Score=44.78 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHhHHHHHHHHH
Q 038510 174 MIGVYGMGGIGKTTLVKEVGRQ 195 (871)
Q Consensus 174 vi~I~G~gGiGKTtLa~~v~~~ 195 (871)
-|+|+|.+|+|||||.+.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998763
No 497
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.25 E-value=0.32 Score=46.02 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 173 NMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 173 ~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.+.+|+|..|.|||||+.+++--.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 388999999999999999998643
No 498
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=87.24 E-value=0.69 Score=51.17 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhcCCCceEEEEEcCCCCcHhHHHHHHHHHHhhc
Q 038510 156 RKSTFKEILDALSNRDFNMIGVYGMGGIGKTTLVKEVGRQAKEN 199 (871)
Q Consensus 156 r~~~~~~l~~~l~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 199 (871)
..+.+..+..++.+++ +.+.|.|.+|+||||++..+.......
T Consensus 30 Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4445556666665544 489999999999999999998877544
No 499
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.23 E-value=0.38 Score=46.91 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 170 RDFNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 170 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
.....|.|+|.+|+|||||+..+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345688999999999999999988654
No 500
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.22 E-value=0.35 Score=48.24 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHhHHHHHHHHHH
Q 038510 172 FNMIGVYGMGGIGKTTLVKEVGRQA 196 (871)
Q Consensus 172 ~~vi~I~G~gGiGKTtLa~~v~~~~ 196 (871)
..++.|.|.+|+||||||.+++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998887654
Done!