BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038513
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 2 VQVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPI 61
+ V + I GD +DVICQ V+++ D LVVGSRGLG+ ++ F+G+VS +C HA CP+
Sbjct: 99 IGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPV 158
Query: 62 LIVK 65
+K
Sbjct: 159 XTIK 162
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
L+L+G + I QA DL+V+G+RGLG + FLGS S A CP+L+V+
Sbjct: 80 ALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
A ++ G+ R+ I + EQ ++DL+VVGS G + LGS ++ H+A C +L V+
Sbjct: 88 AHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
A ++ G+ R+ I + EQ ++DL+VVGS G + LGS ++ H+A C +L V+
Sbjct: 88 AHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%)
Query: 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
N +T+I G D I + E+ ++ L+++ SRG + FLGS P+LI+
Sbjct: 95 NVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154
Query: 65 KPPKEHH 71
K E+
Sbjct: 155 KEVDENE 161
>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
Proteus Mirabilis Hi4320
Length = 319
Score = 35.8 bits (81), Expect = 0.007, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
+T + +G VI Q E+++ ++V+G G + AFLG+ ++ H C +L +KP
Sbjct: 246 KTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
IDL+V+G+ G R +GS + Y HA C +++++
Sbjct: 109 IDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+ +I+ G + I + E +D++++GS G +K LGSV++ + P+L+VK
Sbjct: 100 KDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 34.3 bits (77), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
+ + G I + + DL+V+G++G K LGSV+ A A CP+L+V
Sbjct: 90 RAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
GD I +A E + + GSRG K K+ LGSVS+ H + P+ I K
Sbjct: 111 GDPVVEIIKASE--NYSFIAXGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 10 ILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
I G I E+++ + GSRG G V LGS S+ + P+ + K
Sbjct: 234 IESGTPHKAILAKREEINATTIFXGSRGAGSVXTXILGSTSESVIRRSPVPVFVCK 289
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 32.3 bits (72), Expect = 0.067, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 30 LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
L+VVG G G+ LGSVS HA CP++I+
Sbjct: 125 LMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 159
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+ ++ D AR ++ ++ E L+VVGSRG G +GSV + A A P+++ +
Sbjct: 250 RVVVRDQPARQLVQRSEEA---QLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR 305
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+ ++ D AR ++ ++ E L+VVGSRG G +GSV + A A P+++ +
Sbjct: 238 RVVVRDQPARQLVQRSEEA---QLVVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVAR 293
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 30 LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
L VVG G G+ LGSVS HA CP++I+
Sbjct: 113 LXVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 147
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
D + ++ DLLVVG+ GL + LGSV + A +LIV
Sbjct: 109 DALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156
>pdb|1WY7|A Chain A, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|B Chain B, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|C Chain C, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
pdb|1WY7|D Chain D, Crystal Structure Of A Putative Rna Methyltransferase
Ph1948 From Pyrococcus Horikoshii
Length = 207
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 15 ARDVICQAVEQMHIDLLVVGSRGLGKVK---RAFLGSVSDYCAHHAVCPILIVKPP 67
A++VIC V++ +D+L+ LG+ K + F+G VS++ + I+I PP
Sbjct: 72 AKEVICVEVDKEAVDVLI---ENLGEFKGKFKVFIGDVSEFNSR---VDIVIXNPP 121
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCP 60
+Q L+ + A+DV+ QA++ + ++ G G GK +G+ +Y H + P
Sbjct: 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKT-YTMMGATENY-KHRGILP 136
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 10 ILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+ +G +D I + + DL+++ S + LGS + HA C +L+V+
Sbjct: 90 VAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 10 ILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+ +G +D I + + DL+++ S + LGS + HA C +L+V+
Sbjct: 89 VAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|1JMV|A Chain A, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|B Chain B, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|C Chain C, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|D Chain D, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
Length = 141
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 13 GDARDVICQAVEQMHIDLLVVG 34
GD V+ A+EQ +DLLV G
Sbjct: 88 GDLGQVLSDAIEQYDVDLLVTG 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,584,601
Number of Sequences: 62578
Number of extensions: 82698
Number of successful extensions: 195
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 22
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)