BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038513
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 2 VQVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPI 61
+ V + I GD +DVICQ V+++ D LVVGSRGLG+ ++ F+G+VS +C HA CP+
Sbjct: 99 IGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPV 158
Query: 62 LIVK 65
+ +K
Sbjct: 159 MTIK 162
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region
OS=Thermus aquaticus PE=3 SV=1
Length = 137
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
L+L G + I QA DL+V+G+RGLG V FLGS S A CP+L+V+
Sbjct: 80 ALLLQGRPAEAILQAAIGEKADLIVMGTRGLGAVGSLFLGSQSQKVVAEAPCPVLLVR 137
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 4 VNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63
V T +L+G + I + E+ DL+V+G+ G ++R LGSV++ +A CP+L+
Sbjct: 104 VKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSVAERVIKNAHCPVLV 163
Query: 64 VKPPKEH 70
VK PK+
Sbjct: 164 VKKPKKE 170
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 4 VNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63
V A+T+ +G+ I ++ + L+VVGSRG+ +K LGSVS + + CP+LI
Sbjct: 87 VQAETIYANGEPAHEILNHAKEKGVSLIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLI 146
Query: 64 VK 65
V+
Sbjct: 147 VR 148
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67
G +ICQ +Q + D++VVG RG + LGSV +Y HHA C + +V P
Sbjct: 53 GSPGKIICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVVPTP 107
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 29 DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
DL+V+G RGL + FLGSVS Y HH C +LIV+
Sbjct: 117 DLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62
Q + IL+GD + I + ++ D++V GSR ++K+ GSVS+ + + P+L
Sbjct: 104 QADGDIDILEGDPAESIIEHANRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVL 163
Query: 63 IVK 65
IVK
Sbjct: 164 IVK 166
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 30 LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
L+VVGS+G+G + R LGS+S HHA CP+ I+
Sbjct: 113 LMVVGSQGMGALGRLLLGSISTALLHHARCPVAII 147
Score = 37.4 bits (85), Expect = 0.029, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
++L+ D AR ++ + EQ L+VVGS G G LGSVS AH P+++V+P
Sbjct: 237 RSLVCDKPARWLL-EHSEQAQ--LVVVGSHGRGGFSGMLLGSVSSAVAHSVRIPVIVVRP 293
>sp|Q4L751|Y1215_STAHJ Putative universal stress protein SH1215 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH1215 PE=3 SV=1
Length = 165
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 4 VNAQTLILDGDARDVICQAV-EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62
N +T + G + +I + + ++ +DL++ G+ GL V+R +GSVS+ HA C +L
Sbjct: 81 TNVETRLEFGSPKAIIPKKLASELGVDLIMCGTSGLNAVERFIVGSVSEAIVRHAPCDVL 140
Query: 63 IVK 65
+V+
Sbjct: 141 VVR 143
>sp|P72817|Y1654_SYNY3 Universal stress protein Sll1654 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1654 PE=3 SV=1
Length = 157
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 4 VNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63
+ +T+ +G A IC ++++ DL+V+G RGLG SV+ + + CP+L+
Sbjct: 96 IATKTIEREGMASFTICDVADEVNADLIVMGCRGLGLTTEGVAESVTARVINLSPCPVLV 155
Query: 64 V 64
V
Sbjct: 156 V 156
>sp|Q2FXL6|Y1819_STAA8 Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_01819 PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6GFZ7|Y1788_STAAR Putative universal stress protein SAR1788 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR1788 PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q5HF64|Y1759_STAAC Putative universal stress protein SACOL1759 OS=Staphylococcus
aureus (strain COL) GN=SACOL1759 PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q99TF3|Y1710_STAAM Putative universal stress protein SAV1710 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV1710 PE=1 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2FG28|Y1656_STAA3 Putative universal stress protein SAUSA300_1656 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_1656 PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A0N0|Y1653_STAAW Putative universal stress protein MW1653 OS=Staphylococcus aureus
(strain MW2) GN=MW1653 PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6G8L7|Y1637_STAAS Putative universal stress protein SAS1637 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS1637 PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2YTD0|Y1569_STAAB Putative universal stress protein SAB1569 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB1569 PE=3 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A551|Y1532_STAAN Putative universal stress protein SA1532 OS=Staphylococcus aureus
(strain N315) GN=SA1532 PE=1 SV=1
Length = 166
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+++ DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 103 EINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 2 VQVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPI 61
V+VN + +I A+ +I + ++ + L+V+GSRG +K LGS S+Y + + P+
Sbjct: 507 VEVNIE-VIHHEKAKHLIIEMIDYIEPSLVVMGSRGRSHLKGVLLGSFSNYLVNKSSVPV 565
Query: 62 LIVKPPKEHHKHK 74
++ + + +K +
Sbjct: 566 MVARKKLKKNKQR 578
>sp|O27222|Y1154_METTH Universal stress protein MTH_1154 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1154 PE=3 SV=1
Length = 146
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62
V+ + ++ +GD D I + E+ +D++V+G+ G V + LGSVS+ H+A C I
Sbjct: 83 NVSFRAVMREGDPADEIVKVAEEEDVDVIVMGT-GKSLVDKHLLGSVSEKVVHYAPCTIH 141
Query: 63 IVK 65
+V+
Sbjct: 142 LVR 144
>sp|O74782|YGBA_SCHPO Universal stress protein A family protein C25B2.10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC25B2.10 PE=1 SV=1
Length = 307
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFL-----GSVSDYCAHHAVCPILIVKPP 67
G +D+I + + D L+VG+RG K +F GSVS +C + P+++V+P
Sbjct: 222 GKPQDMILRTIHVYSPDSLIVGTRG--KALNSFQSLLSSGSVSKFCLQKSPIPVIVVRPD 279
Query: 68 KE--HHKHKNFKDR 79
++ K+K KD+
Sbjct: 280 RKRVRSKNKRLKDK 293
>sp|Q50777|Y1538_METTM Universal stress protein MTBMA_c15380 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=MTBMA_c15380 PE=3 SV=1
Length = 143
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62
V + ++L+G+ D I + E+ +D++++G+ G V + LGSVS+ H+A C I
Sbjct: 80 NVKFRGVMLEGNPADEIVKLAEEEDVDVIIMGT-GKSLVDKHLLGSVSEKVVHYAPCTIH 138
Query: 63 IVK 65
+V+
Sbjct: 139 LVR 141
>sp|P60005|USPE_PHOLL Universal stress protein E OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=uspE PE=3 SV=1
Length = 314
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T I +G VI Q ++M+ ++V+G G + AFLG+ +++ H C IL +KP
Sbjct: 244 THIHEGLPESVIPQMCDEMNAGIIVLGILGRTGLSAAFLGNTAEHVIDHLKCDILTIKP 302
>sp|Q8CS61|Y1385_STAES Putative universal stress protein SE_1385 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1385 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 29 DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 107 DLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|Q5HNJ5|Y1273_STAEQ Putative universal stress protein SERP1273 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1273 PE=3
SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 29 DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
DL++ G+ GL V+R +GSVS+ HA C +L+V+
Sbjct: 107 DLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|P67093|USPG_SALTY Universal stress protein G OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspG PE=3 SV=1
Length = 142
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
G RDV+ + E++ D++V+GSR + LGS + HA P+L+V+
Sbjct: 91 GSVRDVVNEMGEELDADVVVIGSRN-PSITTHLLGSNASSVVRHATLPVLVVR 142
>sp|P67094|USPG_SALTI Universal stress protein G OS=Salmonella typhi GN=uspG PE=3 SV=1
Length = 142
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
G RDV+ + E++ D++V+GSR + LGS + HA P+L+V+
Sbjct: 91 GSVRDVVNEMGEELDADVVVIGSRN-PSITTHLLGSNASSVVRHATLPVLVVR 142
>sp|Q49YE0|Y1056_STAS1 Putative universal stress protein SSP1056 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1056 PE=3 SV=1
Length = 167
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 5 NAQTLILDGDARDVICQAV-EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63
N +T + G + +I + + + DL++ G+ GL V+R +GSVS+ H+ C +L+
Sbjct: 82 NVETRLEFGSPKAIIPKKLATDVDADLIMCGTSGLNAVERFIVGSVSEAIVRHSPCDVLV 141
Query: 64 VK 65
V+
Sbjct: 142 VR 143
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 36.6 bits (83), Expect = 0.050, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 24 EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
E L+VVGS G G LGSVS A A P+++V+P
Sbjct: 251 EAKQAQLVVVGSHGRGGFTGMLLGSVSSRVAQSATTPVMVVRP 293
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 30 LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
++VVG+RG+G + R LGS S H+A P+++V
Sbjct: 113 MVVVGNRGMGALGRVLLGSTSTSLLHYASGPVVVV 147
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 29 DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
+++V+GS G G + R LGSVS A CP+ ++
Sbjct: 112 EMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 30 LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
L+VVGS G G + LGSVS+ H A P+++ +
Sbjct: 258 LVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 29 DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
+++V+GS G G + R LGSVS A CP+ ++
Sbjct: 112 EMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 30 LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
L+VVGS G G + LGSVS+ H A P+++ +
Sbjct: 258 LVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVAR 293
>sp|P0AAC3|USPE_SHIFL Universal stress protein E OS=Shigella flexneri GN=uspE PE=3 SV=2
Length = 316
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T + G +VI E + ++V+G+ G + AFLG+ ++ H C +L++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P0AAC0|USPE_ECOLI Universal stress protein E OS=Escherichia coli (strain K12) GN=uspE
PE=1 SV=2
Length = 316
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T + G +VI E + ++V+G+ G + AFLG+ ++ H C +L++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P0AAC1|USPE_ECOL6 Universal stress protein E OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspE PE=3 SV=2
Length = 316
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T + G +VI E + ++V+G+ G + AFLG+ ++ H C +L++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P0AAC2|USPE_ECO57 Universal stress protein E OS=Escherichia coli O157:H7 GN=uspE PE=3
SV=2
Length = 316
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T + G +VI E + ++V+G+ G + AFLG+ ++ H C +L++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|P39177|USPG_ECOLI Universal stress protein G OS=Escherichia coli (strain K12) GN=uspG
PE=1 SV=2
Length = 142
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
G RD + + E++ D++V+GSR + LGS + HA P+L+V+
Sbjct: 91 GSVRDEVNELAEELGADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVVR 142
>sp|Q8XBT3|USPG_ECO57 Universal stress protein G OS=Escherichia coli O157:H7 GN=uspG PE=3
SV=1
Length = 142
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
G RD + + E++ D++V+GSR + LGS + HA P+L+V+
Sbjct: 91 GSVRDEVNELAEELGADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVVR 142
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+ +I+ G + I + E +D++++GS G +K LGSV++ + P+L+VK
Sbjct: 100 KDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158
>sp|Q83M07|USPG_SHIFL Universal stress protein G OS=Shigella flexneri GN=uspG PE=3 SV=1
Length = 142
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
G RD + + E++ D++V+GSR + LGS + HA P+L+V+
Sbjct: 91 GSVRDEVNELAEELGADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVVR 142
>sp|Q8Z788|USPE_SALTI Universal stress protein E OS=Salmonella typhi GN=uspE PE=3 SV=3
Length = 315
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T + G +VI E + ++V+G+ G + AFLG+ ++ H C +L++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|Q8ZP84|USPE_SALTY Universal stress protein E OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspE PE=3 SV=3
Length = 315
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T + G +VI E + ++V+G+ G + AFLG+ ++ H C +L++KP
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVIDHLRCDLLVIKP 301
>sp|Q8FK07|USPG_ECOL6 Universal stress protein G OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspG PE=3 SV=2
Length = 142
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
G RD + + +++ D++V+GSR + LGS + HA P+L+V+
Sbjct: 91 GSVRDEVNELAKELDADVVVIGSRN-PSISTHLLGSNASSVIRHANLPVLVVR 142
>sp|P44195|USPE_HAEIN Universal stress protein E homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=uspE PE=1
SV=2
Length = 309
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 35/63 (55%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66
T + +G +VI + +++ +L+++G+ G + A LG+ +++ C +L +KP
Sbjct: 245 HTHVREGFPEEVIPEVAKEIEAELVILGTVGRTGLSAALLGNTAEHVISKLSCNLLGIKP 304
Query: 67 PKE 69
K+
Sbjct: 305 SKK 307
>sp|P45680|USPA2_COXBU Universal stress protein A homolog 2 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA2 PE=1 SV=1
Length = 146
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
G A+ +I + + +DL++VGS G + + LGS S+ H A C +L V+
Sbjct: 91 GPAKFLILEQAKNWGVDLIIVGSHGRHGI-QLLLGSTSNAVLHGAKCDVLAVR 142
>sp|Q83AC1|USPA1_COXBU Universal stress protein A homolog 1 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA1 PE=3 SV=1
Length = 144
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 11 LDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
L G + ++ + E+++IDL+VVG+ G + + LGS ++ H A C +L V
Sbjct: 88 LSGVVKHMVIELAEKLNIDLIVVGTHGHHGLDK-LLGSRANAILHVATCDVLAV 140
>sp|O06189|Y2623_MYCTU Universal stress protein Rv2623/MT2698 OS=Mycobacterium
tuberculosis GN=Rv2623 PE=1 SV=1
Length = 297
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 30 LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
L+VVG G G+ LGSVS HA CP++I+
Sbjct: 113 LMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 147
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65
+ ++ D AR ++ ++ E L+VVGSRG G +GSV + A A P+++ +
Sbjct: 238 RVVVRDQPARQLVQRSEEA---QLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVAR 293
>sp|P64996|Y2346_MYCBO Universal stress protein Mb2346c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2346c PE=3 SV=1
Length = 292
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 23 VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEHHKHKNFKDRV 80
VE++ ++LV+GS G+ R +GS +D H + P+ I P+ +++ + DR+
Sbjct: 99 VEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAIT--PR---RYRCYTDRL 151
>sp|P64995|Y2319_MYCTU Universal stress protein Rv2319c/MT2382 OS=Mycobacterium
tuberculosis GN=Rv2319c PE=3 SV=1
Length = 292
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 23 VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEHHKHKNFKDRV 80
VE++ ++LV+GS G+ R +GS +D H + P+ I P+ +++ + DR+
Sbjct: 99 VEELEAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAIT--PR---RYRCYTDRL 151
>sp|P0A5F8|Y2019_MYCBO Universal stress protein Mb2019 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2019 PE=3 SV=1
Length = 317
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64
+ ++V+G RG G V A LGSVS HA P+ ++
Sbjct: 121 QVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,431,157
Number of Sequences: 539616
Number of extensions: 1018127
Number of successful extensions: 2636
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2569
Number of HSP's gapped (non-prelim): 75
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)