Query 038513
Match_columns 81
No_of_seqs 227 out of 1308
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.8 5.5E-20 1.2E-24 108.3 7.7 62 3-65 81-142 (142)
2 PRK15005 universal stress prot 99.8 6.1E-19 1.3E-23 103.5 7.9 62 3-65 83-144 (144)
3 cd01989 STK_N The N-terminal d 99.8 3.5E-18 7.5E-23 100.6 7.7 65 3-67 78-146 (146)
4 PF00582 Usp: Universal stress 99.7 7E-17 1.5E-21 92.5 7.3 62 4-65 79-140 (140)
5 PRK11175 universal stress prot 99.7 7.7E-17 1.7E-21 104.5 7.2 62 7-68 241-302 (305)
6 cd01988 Na_H_Antiporter_C The 99.7 1.8E-16 4E-21 91.3 7.9 63 3-65 69-132 (132)
7 COG0589 UspA Universal stress 99.7 1.8E-16 3.8E-21 92.8 7.6 62 6-67 91-153 (154)
8 PRK09982 universal stress prot 99.7 5.8E-17 1.2E-21 95.7 5.4 61 5-68 81-141 (142)
9 PRK15118 universal stress glob 99.7 1.1E-16 2.3E-21 94.3 6.2 58 8-68 84-141 (144)
10 PRK11175 universal stress prot 99.7 4.8E-16 1E-20 100.8 7.4 65 3-67 82-147 (305)
11 PRK10116 universal stress prot 99.6 7.6E-16 1.6E-20 90.2 6.2 59 8-68 83-141 (142)
12 cd01987 USP_OKCHK USP domain i 99.6 1.4E-15 3E-20 87.4 6.2 56 10-65 68-124 (124)
13 cd00293 USP_Like Usp: Universa 99.5 9.6E-14 2.1E-18 78.7 7.1 62 3-64 69-130 (130)
14 PRK10490 sensor protein KdpD; 98.4 1.7E-06 3.6E-11 63.9 7.4 61 5-67 313-375 (895)
15 cd01984 AANH_like Adenine nucl 98.2 2.2E-06 4.8E-11 46.3 3.7 50 14-63 35-85 (86)
16 PRK12652 putative monovalent c 98.0 4.6E-05 1E-09 51.5 6.8 63 2-65 80-150 (357)
17 COG2205 KdpD Osmosensitive K+ 97.9 4.7E-05 1E-09 55.8 6.1 67 4-70 310-378 (890)
18 PLN03159 cation/H(+) antiporte 96.9 0.0039 8.5E-08 46.3 6.5 55 13-67 556-616 (832)
19 PRK00109 Holliday junction res 92.2 0.33 7.1E-06 28.7 3.9 54 15-68 42-99 (138)
20 PF02844 GARS_N: Phosphoribosy 91.7 0.22 4.7E-06 28.1 2.6 42 14-62 49-90 (100)
21 COG0041 PurE Phosphoribosylcar 90.7 1.5 3.3E-05 26.7 5.6 58 3-68 29-90 (162)
22 PF03652 UPF0081: Uncharacteri 90.4 1.3 2.7E-05 26.1 5.1 64 6-69 28-98 (135)
23 TIGR00250 RNAse_H_YqgF RNAse H 90.4 1.4 3E-05 25.8 5.2 54 14-68 35-93 (130)
24 TIGR01162 purE phosphoribosyla 88.2 3.5 7.5E-05 25.1 5.9 58 3-68 25-86 (156)
25 PF02887 PK_C: Pyruvate kinase 87.9 2 4.4E-05 24.3 4.6 44 15-67 4-48 (117)
26 COG1927 Mtd Coenzyme F420-depe 87.8 4.2 9.1E-05 26.3 6.3 49 16-68 49-97 (277)
27 COG0107 HisF Imidazoleglycerol 85.8 1.8 3.8E-05 28.3 3.9 62 2-64 19-80 (256)
28 TIGR01769 GGGP geranylgeranylg 85.8 2.8 6E-05 26.6 4.8 50 17-68 14-63 (205)
29 TIGR01826 CofD_related conserv 84.9 3.2 7E-05 28.0 5.0 52 14-68 161-214 (310)
30 PRK00766 hypothetical protein; 84.7 6.7 0.00014 24.7 6.0 59 2-64 41-104 (194)
31 PRK00994 F420-dependent methyl 84.6 6.8 0.00015 25.8 6.1 49 16-68 49-97 (277)
32 PRK08185 hypothetical protein; 84.4 1.8 4E-05 28.7 3.6 55 13-67 23-77 (283)
33 cd07187 YvcK_like family of mo 83.7 3.5 7.6E-05 27.7 4.8 52 14-68 164-217 (308)
34 PF07355 GRDB: Glycine/sarcosi 83.1 1.7 3.8E-05 29.7 3.2 52 15-66 68-119 (349)
35 PF02601 Exonuc_VII_L: Exonucl 82.5 2.1 4.5E-05 28.4 3.4 42 27-68 75-117 (319)
36 PRK03359 putative electron tra 82.4 5.9 0.00013 25.9 5.3 44 15-62 100-143 (256)
37 COG0420 SbcD DNA repair exonuc 82.1 3.1 6.7E-05 28.3 4.1 53 14-68 27-85 (390)
38 cd01985 ETF The electron trans 81.5 4.9 0.00011 24.3 4.6 23 16-38 80-102 (181)
39 cd07044 CofD_YvcK Family of Co 80.7 5 0.00011 27.0 4.6 52 14-68 163-216 (309)
40 cd01715 ETF_alpha The electron 79.7 6.9 0.00015 23.5 4.7 24 15-38 71-94 (168)
41 COG1646 Predicted phosphate-bi 79.6 5.2 0.00011 26.0 4.3 53 14-68 28-80 (240)
42 cd02067 B12-binding B12 bindin 79.3 8 0.00017 21.7 4.7 28 13-40 36-63 (119)
43 PRK06801 hypothetical protein; 79.2 4.1 9E-05 27.1 3.9 54 14-67 29-83 (286)
44 KOG2310 DNA repair exonuclease 78.3 2.5 5.3E-05 30.8 2.7 22 15-36 40-61 (646)
45 PRK06806 fructose-bisphosphate 78.3 5.3 0.00012 26.4 4.2 55 13-67 28-83 (281)
46 PF01884 PcrB: PcrB family; I 78.2 5.1 0.00011 25.9 3.9 52 14-69 19-70 (230)
47 PRK09195 gatY tagatose-bisphos 77.5 3.9 8.5E-05 27.2 3.4 55 13-67 28-83 (284)
48 cd01971 Nitrogenase_VnfN_like 77.4 4.7 0.0001 28.0 3.9 54 14-68 73-126 (427)
49 PRK12342 hypothetical protein; 77.2 11 0.00024 24.7 5.3 44 16-63 98-141 (254)
50 COG0391 Uncharacterized conser 76.8 6 0.00013 26.9 4.1 51 14-67 178-230 (323)
51 TIGR02329 propionate_PrpR prop 76.8 15 0.00033 26.5 6.3 51 6-68 30-83 (526)
52 TIGR00347 bioD dethiobiotin sy 76.6 13 0.00028 21.9 5.3 41 26-67 98-138 (166)
53 TIGR01858 tag_bisphos_ald clas 75.5 5.2 0.00011 26.6 3.6 55 13-67 26-81 (282)
54 PF14639 YqgF: Holliday-juncti 75.1 3.2 6.9E-05 24.9 2.3 51 15-68 51-108 (150)
55 cd01967 Nitrogenase_MoFe_alpha 74.8 9.4 0.0002 26.1 4.8 55 14-68 74-128 (406)
56 TIGR01918 various_sel_PB selen 74.8 5.5 0.00012 28.1 3.6 51 15-65 64-114 (431)
57 cd02072 Glm_B12_BD B12 binding 74.7 4.5 9.7E-05 23.8 2.8 27 14-40 37-63 (128)
58 TIGR01917 gly_red_sel_B glycin 74.7 5.6 0.00012 28.1 3.6 51 15-65 64-114 (431)
59 cd01714 ETF_beta The electron 74.5 5.5 0.00012 24.9 3.3 23 16-38 97-119 (202)
60 PRK12737 gatY tagatose-bisphos 73.6 6.1 0.00013 26.3 3.5 55 13-67 28-83 (284)
61 cd01972 Nitrogenase_VnfE_like 73.5 7.9 0.00017 26.8 4.2 55 14-68 76-130 (426)
62 PF13167 GTP-bdg_N: GTP-bindin 73.3 11 0.00024 21.0 4.0 40 15-62 45-84 (95)
63 cd01968 Nitrogenase_NifE_I Nit 73.0 11 0.00024 26.0 4.8 51 14-68 73-127 (410)
64 TIGR01283 nifE nitrogenase mol 72.5 7.8 0.00017 27.1 4.0 55 14-68 108-162 (456)
65 PF04459 DUF512: Protein of un 72.2 8.1 0.00018 24.5 3.7 53 16-68 149-203 (204)
66 PF02571 CbiJ: Precorrin-6x re 72.0 17 0.00036 23.7 5.2 56 9-70 175-231 (249)
67 PRK15411 rcsA colanic acid cap 71.7 21 0.00045 22.2 5.5 48 14-67 34-86 (207)
68 PRK12857 fructose-1,6-bisphosp 71.4 7.1 0.00015 25.9 3.4 54 14-67 29-83 (284)
69 CHL00076 chlB photochlorophyll 71.3 10 0.00022 27.2 4.4 54 14-67 72-125 (513)
70 TIGR01501 MthylAspMutase methy 71.3 6 0.00013 23.4 2.8 25 14-38 39-63 (134)
71 PRK06247 pyruvate kinase; Prov 71.3 11 0.00023 27.0 4.4 45 15-68 357-402 (476)
72 cd00947 TBP_aldolase_IIB Tagat 71.2 8.5 0.00018 25.5 3.7 55 13-67 23-78 (276)
73 cd01981 Pchlide_reductase_B Pc 70.8 9.1 0.0002 26.5 4.0 55 14-68 72-126 (430)
74 COG0151 PurD Phosphoribosylami 70.6 5.7 0.00012 28.0 2.9 22 15-36 51-72 (428)
75 cd00946 FBP_aldolase_IIA Class 70.0 8.9 0.00019 26.3 3.7 56 13-68 26-97 (345)
76 TIGR00237 xseA exodeoxyribonuc 70.0 5.1 0.00011 28.0 2.6 58 11-68 166-229 (432)
77 cd02070 corrinoid_protein_B12- 69.9 15 0.00033 22.8 4.6 51 13-65 119-172 (201)
78 COG0816 Predicted endonuclease 69.9 14 0.00031 22.1 4.2 53 15-67 41-97 (141)
79 PRK13606 LPPG:FO 2-phospho-L-l 69.9 22 0.00048 24.0 5.5 48 14-66 174-223 (303)
80 PF13500 AAA_26: AAA domain; P 69.6 8.1 0.00018 23.6 3.3 41 26-67 98-138 (199)
81 CHL00073 chlN photochlorophyll 69.4 8.2 0.00018 27.4 3.6 56 15-70 85-140 (457)
82 PRK12738 kbaY tagatose-bisphos 69.4 9.2 0.0002 25.5 3.6 55 13-67 28-83 (286)
83 TIGR02260 benz_CoA_red_B benzo 69.3 5.5 0.00012 27.8 2.7 55 15-69 338-392 (413)
84 cd00288 Pyruvate_Kinase Pyruva 69.3 19 0.00042 25.8 5.4 46 15-69 363-409 (480)
85 PLN02948 phosphoribosylaminoim 68.7 32 0.00069 25.1 6.5 58 3-68 437-498 (577)
86 PRK00090 bioD dithiobiotin syn 68.2 24 0.00053 21.8 5.3 41 26-67 102-142 (222)
87 PRK15424 propionate catabolism 68.1 24 0.00051 25.7 5.7 34 23-68 60-93 (538)
88 TIGR03297 Ppyr-DeCO2ase phosph 67.7 7 0.00015 26.8 2.9 54 13-66 63-123 (361)
89 TIGR01064 pyruv_kin pyruvate k 67.6 14 0.0003 26.3 4.4 45 15-68 361-406 (473)
90 cd04731 HisF The cyclase subun 67.4 27 0.00059 22.1 5.5 50 16-65 151-200 (243)
91 PF00875 DNA_photolyase: DNA p 67.1 5.3 0.00012 23.7 2.1 62 4-67 65-126 (165)
92 PRK09197 fructose-bisphosphate 66.8 12 0.00026 25.8 3.8 55 14-68 32-102 (350)
93 PTZ00408 NAD-dependent deacety 66.7 32 0.0007 22.2 5.9 47 15-68 162-209 (242)
94 cd07186 CofD_like LPPG:FO 2-ph 66.6 37 0.00081 22.9 6.1 50 14-66 172-223 (303)
95 PF00731 AIRC: AIR carboxylase 66.6 26 0.00056 21.2 6.3 59 3-69 27-89 (150)
96 PLN02762 pyruvate kinase compl 66.6 16 0.00034 26.5 4.5 45 15-68 397-442 (509)
97 PRK14478 nitrogenase molybdenu 66.4 12 0.00027 26.4 4.0 54 14-67 106-159 (475)
98 PRK06354 pyruvate kinase; Prov 66.3 14 0.00031 27.1 4.3 44 16-68 366-410 (590)
99 PRK07998 gatY putative fructos 66.2 9.5 0.00021 25.4 3.2 54 14-67 29-83 (283)
100 PF01933 UPF0052: Uncharacteri 65.7 11 0.00023 25.3 3.4 52 14-68 172-225 (300)
101 PRK02929 L-arabinose isomerase 65.7 45 0.00098 24.1 6.7 47 14-66 55-105 (499)
102 PHA02546 47 endonuclease subun 65.2 29 0.00062 23.4 5.4 54 15-68 27-86 (340)
103 PRK08057 cobalt-precorrin-6x r 65.0 13 0.00028 24.2 3.6 54 10-69 172-226 (248)
104 PRK00286 xseA exodeoxyribonucl 64.9 26 0.00056 24.4 5.3 58 11-68 172-234 (438)
105 PF01993 MTD: methylene-5,6,7, 64.7 38 0.00083 22.4 5.7 47 17-67 49-95 (276)
106 PRK09206 pyruvate kinase; Prov 64.6 17 0.00036 26.0 4.3 45 15-68 358-403 (470)
107 cd05565 PTS_IIB_lactose PTS_II 64.5 6.7 0.00014 22.0 2.0 41 18-66 40-80 (99)
108 cd02071 MM_CoA_mut_B12_BD meth 64.4 11 0.00023 21.5 2.9 26 14-39 37-62 (122)
109 COG0562 Glf UDP-galactopyranos 64.2 12 0.00027 25.8 3.5 34 28-69 2-35 (374)
110 TIGR01859 fruc_bis_ald_ fructo 64.0 13 0.00028 24.6 3.5 54 13-66 26-82 (282)
111 cd08550 GlyDH-like Glycerol_de 63.8 42 0.00092 22.6 6.3 56 4-67 50-110 (349)
112 PF01012 ETF: Electron transfe 63.3 10 0.00022 22.5 2.8 41 15-62 78-118 (164)
113 PF00448 SRP54: SRP54-type pro 63.3 15 0.00034 22.8 3.6 50 14-64 67-120 (196)
114 cd00950 DHDPS Dihydrodipicolin 63.2 18 0.0004 23.5 4.1 52 16-67 84-135 (284)
115 TIGR00640 acid_CoA_mut_C methy 63.2 14 0.0003 21.6 3.2 40 14-55 40-79 (132)
116 TIGR00619 sbcd exonuclease Sbc 62.6 22 0.00047 22.9 4.4 52 16-67 28-84 (253)
117 PRK02261 methylaspartate mutas 62.5 11 0.00025 22.1 2.8 26 14-39 41-66 (137)
118 cd03114 ArgK-like The function 62.2 27 0.00059 20.6 4.4 48 16-71 80-127 (148)
119 cd02812 PcrB_like PcrB_like pr 62.1 27 0.00059 22.4 4.6 51 16-69 14-65 (219)
120 TIGR03572 WbuZ glycosyl amidat 62.1 37 0.0008 21.3 5.6 51 16-66 155-205 (232)
121 TIGR00715 precor6x_red precorr 62.0 18 0.00038 23.6 3.9 54 9-69 178-234 (256)
122 PF10649 DUF2478: Protein of u 61.7 24 0.00052 21.5 4.1 46 18-66 84-131 (159)
123 COG2201 CheB Chemotaxis respon 61.5 33 0.00071 23.7 5.2 49 15-67 35-83 (350)
124 cd07388 MPP_Tt1561 Thermus the 61.2 33 0.00073 21.9 4.9 53 15-69 19-73 (224)
125 PRK13399 fructose-1,6-bisphosp 60.9 17 0.00037 25.0 3.7 55 13-67 28-84 (347)
126 PF06506 PrpR_N: Propionate ca 60.4 29 0.00064 21.0 4.5 49 7-67 11-62 (176)
127 PRK04147 N-acetylneuraminate l 60.2 26 0.00056 23.0 4.4 54 14-67 84-139 (293)
128 PRK05826 pyruvate kinase; Prov 59.5 25 0.00055 25.1 4.5 45 15-68 360-406 (465)
129 KOG0781 Signal recognition par 59.3 26 0.00056 25.6 4.4 51 15-65 454-504 (587)
130 TIGR01521 FruBisAldo_II_B fruc 59.3 19 0.00042 24.7 3.8 55 13-67 26-82 (347)
131 PTZ00300 pyruvate kinase; Prov 59.3 21 0.00045 25.5 4.0 44 15-67 336-380 (454)
132 TIGR00167 cbbA ketose-bisphosp 59.1 20 0.00043 23.9 3.7 55 13-67 28-86 (288)
133 TIGR00524 eIF-2B_rel eIF-2B al 59.0 42 0.0009 22.5 5.3 44 25-68 195-241 (303)
134 PF01949 DUF99: Protein of unk 58.9 13 0.00029 23.2 2.7 62 3-68 36-101 (187)
135 PRK05720 mtnA methylthioribose 58.9 47 0.001 22.8 5.6 44 25-68 223-269 (344)
136 cd00840 MPP_Mre11_N Mre11 nucl 58.7 31 0.00068 21.0 4.5 52 15-67 29-85 (223)
137 COG4126 Hydantoin racemase [Am 58.4 17 0.00036 23.6 3.2 40 15-62 162-201 (230)
138 COG2086 FixA Electron transfer 58.4 43 0.00093 22.1 5.2 46 15-64 99-144 (260)
139 PTZ00066 pyruvate kinase; Prov 58.1 25 0.00055 25.5 4.3 45 15-68 399-444 (513)
140 PLN02461 Probable pyruvate kin 58.1 44 0.00094 24.3 5.5 42 15-65 383-425 (511)
141 PRK07315 fructose-bisphosphate 57.9 18 0.00039 24.1 3.4 54 14-67 29-86 (293)
142 PRK10799 metal-binding protein 57.9 16 0.00034 23.6 3.1 61 7-68 36-100 (247)
143 cd01979 Pchlide_reductase_N Pc 57.8 14 0.0003 25.4 2.9 51 14-68 74-128 (396)
144 smart00732 YqgFc Likely ribonu 57.7 28 0.0006 18.5 4.9 55 14-68 38-94 (99)
145 COG0434 SgcQ Predicted TIM-bar 57.7 51 0.0011 21.8 5.3 49 13-64 163-211 (263)
146 cd00408 DHDPS-like Dihydrodipi 57.7 43 0.00093 21.6 5.1 53 16-68 81-133 (281)
147 PRK09590 celB cellobiose phosp 57.5 6.9 0.00015 22.0 1.3 43 19-67 42-84 (104)
148 cd00951 KDGDH 5-dehydro-4-deox 57.5 25 0.00055 23.1 4.0 49 18-66 85-133 (289)
149 TIGR00674 dapA dihydrodipicoli 57.0 29 0.00063 22.7 4.3 49 19-67 85-133 (285)
150 COG0036 Rpe Pentose-5-phosphat 56.8 43 0.00093 21.6 4.8 49 3-53 109-157 (220)
151 PLN02765 pyruvate kinase 56.6 46 0.001 24.3 5.4 42 15-65 396-438 (526)
152 cd01976 Nitrogenase_MoFe_alpha 56.6 25 0.00055 24.5 4.1 51 14-68 85-140 (421)
153 TIGR00045 glycerate kinase. Th 56.3 23 0.00051 24.6 3.8 39 26-66 282-323 (375)
154 COG0644 FixC Dehydrogenases (f 56.3 18 0.00038 24.7 3.3 35 27-69 3-37 (396)
155 TIGR01520 FruBisAldo_II_A fruc 56.3 28 0.0006 24.1 4.1 56 13-68 37-109 (357)
156 TIGR01279 DPOR_bchN light-inde 56.2 18 0.00039 25.0 3.3 51 14-68 71-125 (407)
157 PRK08610 fructose-bisphosphate 56.0 21 0.00046 23.8 3.5 55 13-67 28-86 (286)
158 PF01784 NIF3: NIF3 (NGG1p int 56.0 20 0.00042 23.0 3.3 28 6-33 32-59 (241)
159 COG1412 Uncharacterized protei 55.5 42 0.00092 20.0 4.7 45 12-68 83-127 (136)
160 PF02729 OTCace_N: Aspartate/o 55.4 29 0.00063 20.5 3.8 40 13-62 81-120 (142)
161 COG2379 GckA Putative glycerat 55.4 23 0.00049 25.0 3.6 65 4-68 248-317 (422)
162 TIGR00512 salvage_mtnA S-methy 55.3 58 0.0013 22.3 5.5 43 25-67 223-268 (331)
163 TIGR01278 DPOR_BchB light-inde 54.9 20 0.00042 25.7 3.4 50 14-67 72-124 (511)
164 cd01147 HemV-2 Metal binding p 54.9 46 0.00099 20.9 4.8 38 23-67 70-107 (262)
165 PF00072 Response_reg: Respons 54.9 31 0.00068 18.2 4.6 48 16-67 32-80 (112)
166 PF01497 Peripla_BP_2: Peripla 54.8 48 0.001 20.3 5.0 36 25-68 58-93 (238)
167 TIGR01862 N2-ase-Ialpha nitrog 54.8 27 0.00057 24.5 4.0 51 14-68 104-159 (443)
168 TIGR02432 lysidine_TilS_N tRNA 54.7 18 0.00039 21.8 2.9 23 17-39 89-111 (189)
169 PF01171 ATP_bind_3: PP-loop f 54.3 15 0.00032 22.2 2.4 23 17-39 86-108 (182)
170 cd04732 HisA HisA. Phosphorib 54.3 51 0.0011 20.5 5.1 49 17-65 149-197 (234)
171 cd01992 PP-ATPase N-terminal d 54.3 19 0.00041 21.5 2.9 23 17-39 86-108 (185)
172 COG0191 Fba Fructose/tagatose 54.2 19 0.00042 24.1 3.1 54 14-67 29-84 (286)
173 PRK08334 translation initiatio 54.0 72 0.0016 22.1 6.0 44 23-66 234-280 (356)
174 PRK11914 diacylglycerol kinase 53.7 57 0.0012 21.4 5.3 60 4-70 40-100 (306)
175 cd00453 FTBP_aldolase_II Fruct 53.7 19 0.00042 24.7 3.1 56 13-68 23-95 (340)
176 PRK14665 mnmA tRNA-specific 2- 53.6 26 0.00056 24.1 3.7 48 17-64 103-166 (360)
177 cd01977 Nitrogenase_VFe_alpha 53.5 42 0.0009 23.2 4.7 50 14-67 74-129 (415)
178 TIGR03282 methan_mark_13 putat 53.4 36 0.00079 23.5 4.3 50 14-67 62-113 (352)
179 COG1504 Uncharacterized conser 53.2 37 0.0008 19.7 3.7 48 17-68 52-99 (121)
180 COG1410 MetH Methionine syntha 53.2 18 0.00039 27.6 3.0 51 14-66 445-495 (842)
181 cd03557 L-arabinose_isomerase 53.0 84 0.0018 22.6 6.7 49 14-68 49-101 (484)
182 TIGR01819 F420_cofD LPPG:FO 2- 53.0 30 0.00064 23.4 3.8 48 14-66 171-220 (297)
183 COG1433 Uncharacterized conser 52.8 45 0.00097 19.4 5.0 42 16-67 54-95 (121)
184 cd00954 NAL N-Acetylneuraminic 52.8 63 0.0014 21.1 5.3 51 18-68 87-138 (288)
185 TIGR00853 pts-lac PTS system, 52.6 11 0.00024 20.7 1.6 36 27-68 50-85 (95)
186 PF03437 BtpA: BtpA family; I 52.5 54 0.0012 21.5 4.9 48 14-64 159-206 (254)
187 TIGR00381 cdhD CO dehydrogenas 52.5 42 0.00092 23.5 4.5 51 15-65 141-195 (389)
188 cd01974 Nitrogenase_MoFe_beta 52.3 32 0.00068 24.0 4.0 50 14-67 72-129 (435)
189 PF06050 HGD-D: 2-hydroxygluta 52.1 15 0.00033 24.3 2.4 53 14-67 273-326 (349)
190 COG2099 CobK Precorrin-6x redu 52.1 44 0.00096 22.1 4.4 52 15-70 54-105 (257)
191 cd00532 MGS-like MGS-like doma 51.2 42 0.00092 18.7 5.3 61 3-63 42-104 (112)
192 COG0615 TagD Cytidylyltransfer 51.2 8.7 0.00019 23.0 1.0 54 8-67 67-120 (140)
193 PRK03170 dihydrodipicolinate s 51.1 53 0.0012 21.5 4.8 50 18-67 87-136 (292)
194 COG0622 Predicted phosphoester 51.1 51 0.0011 20.2 4.4 37 6-42 82-124 (172)
195 TIGR00683 nanA N-acetylneurami 51.0 53 0.0011 21.6 4.8 52 17-68 86-138 (290)
196 TIGR01917 gly_red_sel_B glycin 51.0 52 0.0011 23.4 4.8 47 15-65 324-371 (431)
197 cd00316 Oxidoreductase_nitroge 50.9 38 0.00083 22.9 4.2 51 14-68 67-121 (399)
198 TIGR00007 phosphoribosylformim 50.7 60 0.0013 20.3 5.7 51 12-63 27-77 (230)
199 cd08173 Gro1PDH Sn-glycerol-1- 50.7 45 0.00098 22.3 4.5 46 15-68 66-112 (339)
200 TIGR00486 YbgI_SA1388 dinuclea 50.5 23 0.0005 22.8 3.0 63 6-68 36-101 (249)
201 cd02065 B12-binding_like B12 b 50.3 31 0.00066 19.1 3.2 49 14-65 37-87 (125)
202 PF03808 Glyco_tran_WecB: Glyc 50.2 24 0.00053 21.3 2.9 45 14-64 88-132 (172)
203 PRK09196 fructose-1,6-bisphosp 50.2 32 0.00069 23.7 3.7 55 13-67 28-84 (347)
204 PF03162 Y_phosphatase2: Tyros 50.0 36 0.00077 20.6 3.6 55 13-67 42-100 (164)
205 PF00464 SHMT: Serine hydroxym 49.7 48 0.001 23.2 4.5 45 15-62 157-201 (399)
206 cd07392 MPP_PAE1087 Pyrobaculu 49.7 53 0.0011 19.3 4.3 45 21-67 17-61 (188)
207 TIGR00583 mre11 DNA repair pro 49.6 20 0.00044 25.0 2.7 22 15-36 30-51 (405)
208 PRK07709 fructose-bisphosphate 49.3 36 0.00077 22.7 3.7 54 14-67 29-86 (285)
209 COG1440 CelA Phosphotransferas 49.3 49 0.0011 18.8 4.0 43 16-66 39-81 (102)
210 PF05198 IF3_N: Translation in 49.2 24 0.00053 18.7 2.5 31 15-45 29-59 (76)
211 cd01965 Nitrogenase_MoFe_beta_ 49.2 49 0.0011 23.0 4.6 50 14-67 68-125 (428)
212 PF09043 Lys-AminoMut_A: D-Lys 49.2 44 0.00096 24.0 4.3 46 6-51 149-197 (509)
213 cd02933 OYE_like_FMN Old yello 49.0 82 0.0018 21.3 5.7 50 17-66 244-293 (338)
214 TIGR02313 HpaI-NOT-DapA 2,4-di 49.0 56 0.0012 21.6 4.6 55 14-68 80-137 (294)
215 cd07399 MPP_YvnB Bacillus subt 49.0 42 0.00091 20.9 3.9 50 17-67 25-78 (214)
216 PRK10342 glycerate kinase I; P 48.9 34 0.00074 23.9 3.7 39 26-66 283-324 (381)
217 TIGR03151 enACPred_II putative 48.7 58 0.0013 21.8 4.7 47 19-65 121-168 (307)
218 PRK10550 tRNA-dihydrouridine s 48.4 82 0.0018 21.2 7.3 60 4-66 134-202 (312)
219 PF12745 HGTP_anticodon2: Anti 48.0 38 0.00082 22.4 3.7 36 3-38 33-68 (273)
220 cd00578 L-fuc_L-ara-isomerases 47.9 71 0.0015 22.3 5.2 47 16-68 52-98 (452)
221 PRK07667 uridine kinase; Provi 47.8 52 0.0011 20.1 4.2 52 16-67 3-54 (193)
222 TIGR01768 GGGP-family geranylg 47.7 61 0.0013 20.9 4.5 50 16-68 16-65 (223)
223 PF00455 DeoRC: DeoR C termina 47.7 51 0.0011 19.7 4.0 37 27-64 62-98 (161)
224 PRK14477 bifunctional nitrogen 47.7 29 0.00063 26.8 3.5 51 14-68 99-153 (917)
225 PRK05835 fructose-bisphosphate 47.7 34 0.00074 23.1 3.5 54 14-67 28-83 (307)
226 PF13727 CoA_binding_3: CoA-bi 47.6 19 0.0004 21.0 2.1 46 16-65 130-175 (175)
227 PF05582 Peptidase_U57: YabG p 47.6 49 0.0011 22.2 4.1 35 3-37 129-164 (287)
228 cd07396 MPP_Nbla03831 Homo sap 47.5 59 0.0013 20.9 4.5 52 16-68 29-83 (267)
229 cd03466 Nitrogenase_NifN_2 Nit 47.1 35 0.00075 23.8 3.6 51 14-68 71-128 (429)
230 cd07402 MPP_GpdQ Enterobacter 47.0 68 0.0015 19.8 4.9 53 15-68 26-80 (240)
231 TIGR00735 hisF imidazoleglycer 46.9 76 0.0016 20.4 5.5 51 15-65 156-206 (254)
232 TIGR02855 spore_yabG sporulati 46.9 52 0.0011 22.1 4.1 34 4-37 129-163 (283)
233 PF13528 Glyco_trans_1_3: Glyc 46.8 60 0.0013 21.0 4.5 41 16-67 83-123 (318)
234 cd01966 Nitrogenase_NifN_1 Nit 46.7 67 0.0014 22.4 4.9 51 14-68 68-126 (417)
235 PRK09932 glycerate kinase II; 46.6 39 0.00084 23.6 3.7 40 26-67 283-325 (381)
236 PF03746 LamB_YcsF: LamB/YcsF 46.5 68 0.0015 21.0 4.6 40 14-63 122-161 (242)
237 COG0329 DapA Dihydrodipicolina 46.5 79 0.0017 21.0 5.1 52 16-67 88-139 (299)
238 COG2870 RfaE ADP-heptose synth 46.4 76 0.0016 22.7 5.0 53 14-69 128-182 (467)
239 COG1058 CinA Predicted nucleot 46.3 62 0.0013 21.4 4.4 58 2-64 33-93 (255)
240 PRK10415 tRNA-dihydrouridine s 46.2 89 0.0019 21.0 7.2 63 4-66 134-202 (321)
241 PRK02083 imidazole glycerol ph 46.1 78 0.0017 20.2 5.3 50 16-65 155-204 (253)
242 PF13607 Succ_CoA_lig: Succiny 46.0 28 0.0006 20.6 2.6 62 3-68 25-91 (138)
243 PF07972 Flavodoxin_NdrI: NrdI 46.0 26 0.00057 20.4 2.4 49 15-64 57-107 (122)
244 COG4080 SpoU rRNA Methylase fa 45.8 62 0.0013 19.5 4.0 50 15-66 15-64 (147)
245 PRK04148 hypothetical protein; 45.6 64 0.0014 19.1 4.9 26 14-39 89-114 (134)
246 COG0788 PurU Formyltetrahydrof 45.6 39 0.00085 22.6 3.4 55 3-66 138-196 (287)
247 cd00952 CHBPH_aldolase Trans-o 45.6 63 0.0014 21.5 4.5 52 17-68 93-145 (309)
248 PRK07084 fructose-bisphosphate 45.6 31 0.00067 23.5 3.0 55 13-67 34-94 (321)
249 cd04722 TIM_phosphate_binding 45.5 61 0.0013 18.9 4.8 50 15-64 13-63 (200)
250 PRK10481 hypothetical protein; 45.5 61 0.0013 20.9 4.3 43 15-64 167-212 (224)
251 TIGR02263 benz_CoA_red_C benzo 45.4 48 0.001 22.8 4.0 49 15-64 309-357 (380)
252 PLN02257 phosphoribosylamine-- 45.3 29 0.00062 24.4 3.0 23 14-36 49-71 (434)
253 PRK03620 5-dehydro-4-deoxygluc 45.3 53 0.0012 21.8 4.1 48 19-66 93-140 (303)
254 TIGR03249 KdgD 5-dehydro-4-deo 45.2 52 0.0011 21.7 4.1 48 18-65 90-137 (296)
255 PRK05406 LamB/YcsF family prot 45.2 64 0.0014 21.2 4.3 40 14-63 124-163 (246)
256 TIGR01282 nifD nitrogenase mol 45.0 48 0.001 23.5 4.0 55 14-68 118-173 (466)
257 PF01116 F_bP_aldolase: Fructo 44.8 7.4 0.00016 25.9 0.0 51 14-64 28-79 (287)
258 PRK13054 lipid kinase; Reviewe 44.4 90 0.0019 20.5 5.5 61 3-70 31-96 (300)
259 PRK11889 flhF flagellar biosyn 44.2 42 0.00091 23.9 3.6 50 16-66 309-360 (436)
260 TIGR02765 crypto_DASH cryptoch 44.2 29 0.00064 24.0 2.9 33 5-37 74-106 (429)
261 TIGR03190 benz_CoA_bzdN benzoy 44.2 73 0.0016 21.8 4.8 53 15-69 301-354 (377)
262 PRK06027 purU formyltetrahydro 44.1 46 0.001 22.0 3.7 23 15-37 153-175 (286)
263 TIGR01285 nifN nitrogenase mol 44.1 77 0.0017 22.2 4.9 51 14-68 78-136 (432)
264 TIGR00511 ribulose_e2b2 ribose 44.0 54 0.0012 21.9 4.0 42 27-68 183-227 (301)
265 PRK13789 phosphoribosylamine-- 43.8 31 0.00067 24.1 3.0 23 14-36 55-77 (426)
266 PRK14024 phosphoribosyl isomer 43.4 87 0.0019 20.0 5.1 50 16-65 148-197 (241)
267 TIGR01918 various_sel_PB selen 43.1 80 0.0017 22.5 4.8 49 14-66 323-372 (431)
268 PF02595 Gly_kinase: Glycerate 43.1 38 0.00083 23.5 3.3 40 26-67 283-325 (377)
269 PRK13585 1-(5-phosphoribosyl)- 43.0 84 0.0018 19.8 5.2 52 11-63 30-81 (241)
270 TIGR02370 pyl_corrinoid methyl 43.0 33 0.00071 21.3 2.7 31 13-43 121-151 (197)
271 cd07410 MPP_CpdB_N Escherichia 42.8 91 0.002 20.1 5.9 51 14-64 167-224 (277)
272 TIGR02452 conserved hypothetic 42.8 49 0.0011 21.9 3.6 27 15-41 193-219 (266)
273 PF02310 B12-binding: B12 bind 42.8 58 0.0013 17.9 3.6 30 7-36 30-60 (121)
274 cd08171 GlyDH-like2 Glycerol d 42.7 66 0.0014 21.6 4.3 44 16-67 67-111 (345)
275 PF05728 UPF0227: Uncharacteri 42.6 82 0.0018 19.5 4.5 43 17-67 47-90 (187)
276 TIGR00591 phr2 photolyase PhrI 42.6 33 0.00072 24.0 3.0 32 5-36 91-122 (454)
277 cd01424 MGS_CPS_II Methylglyox 42.6 59 0.0013 17.9 5.7 45 16-63 56-100 (110)
278 PRK00843 egsA NAD(P)-dependent 42.5 61 0.0013 21.9 4.1 45 16-68 76-121 (350)
279 TIGR00696 wecB_tagA_cpsF bacte 42.4 37 0.00081 20.9 2.9 43 16-64 89-131 (177)
280 PLN02858 fructose-bisphosphate 42.4 39 0.00084 27.5 3.5 54 14-67 1125-1178(1378)
281 TIGR03556 photolyase_8HDF deox 42.4 33 0.00072 24.3 2.9 33 5-37 68-100 (471)
282 cd07394 MPP_Vps29 Homo sapiens 42.2 79 0.0017 19.2 4.6 34 7-40 80-119 (178)
283 PRK06372 translation initiatio 42.1 72 0.0016 21.0 4.3 42 27-68 151-195 (253)
284 COG2303 BetA Choline dehydroge 41.9 44 0.00096 24.1 3.5 37 25-69 5-41 (542)
285 PRK06395 phosphoribosylamine-- 41.9 31 0.00068 24.1 2.7 22 15-36 53-74 (435)
286 cd02069 methionine_synthase_B1 41.7 36 0.00078 21.5 2.8 50 14-65 126-176 (213)
287 PRK02910 light-independent pro 41.3 39 0.00085 24.3 3.2 50 14-67 72-123 (519)
288 PF09936 Methyltrn_RNA_4: SAM- 41.1 91 0.002 19.6 4.9 54 11-65 86-139 (185)
289 TIGR03729 acc_ester putative p 41.1 91 0.002 19.6 4.8 52 16-69 21-72 (239)
290 cd08177 MAR Maleylacetate redu 41.0 75 0.0016 21.3 4.4 45 16-68 66-111 (337)
291 PRK04169 geranylgeranylglycery 40.7 1E+02 0.0022 20.0 4.8 45 21-68 26-70 (232)
292 cd01993 Alpha_ANH_like_II This 40.6 42 0.0009 19.9 2.9 24 16-39 95-118 (185)
293 COG0290 InfC Translation initi 40.5 60 0.0013 20.3 3.5 35 15-49 35-70 (176)
294 PRK14476 nitrogenase molybdenu 40.5 67 0.0015 22.7 4.2 51 14-68 79-137 (455)
295 cd08176 LPO Lactadehyde:propan 40.5 96 0.0021 21.2 4.9 20 16-35 74-94 (377)
296 PRK10157 putative oxidoreducta 40.4 44 0.00096 23.1 3.3 12 24-35 25-36 (428)
297 PRK01033 imidazole glycerol ph 40.4 1E+02 0.0022 19.9 5.5 51 15-65 153-203 (258)
298 cd05564 PTS_IIB_chitobiose_lic 40.3 20 0.00043 19.7 1.3 37 26-68 45-81 (96)
299 KOG1466 Translation initiation 40.1 48 0.001 22.3 3.2 41 27-67 198-241 (313)
300 cd01986 Alpha_ANH_like Adenine 40.1 48 0.001 17.9 2.9 23 17-39 51-73 (103)
301 PRK00856 pyrB aspartate carbam 39.9 90 0.002 20.9 4.6 44 12-64 86-129 (305)
302 PF00701 DHDPS: Dihydrodipicol 39.9 60 0.0013 21.1 3.7 50 18-67 87-136 (289)
303 cd01980 Chlide_reductase_Y Chl 39.8 75 0.0016 22.1 4.3 51 14-68 78-129 (416)
304 TIGR00007 phosphoribosylformim 39.7 94 0.002 19.4 5.2 48 17-64 148-195 (230)
305 PRK13790 phosphoribosylamine-- 39.5 67 0.0015 21.9 4.0 24 14-37 14-37 (379)
306 PRK00748 1-(5-phosphoribosyl)- 39.4 95 0.0021 19.3 5.1 47 17-64 149-196 (233)
307 COG2129 Predicted phosphoester 39.3 87 0.0019 20.4 4.2 50 14-67 17-73 (226)
308 PRK04452 acetyl-CoA decarbonyl 39.2 87 0.0019 21.4 4.4 51 14-64 76-130 (319)
309 cd02173 ECT CTP:phosphoethanol 38.9 35 0.00076 20.4 2.3 28 10-37 71-98 (152)
310 cd01973 Nitrogenase_VFe_beta_l 38.9 74 0.0016 22.5 4.2 50 14-67 73-134 (454)
311 PRK10906 DNA-binding transcrip 38.9 1.1E+02 0.0023 19.8 4.9 38 27-65 134-171 (252)
312 PF07302 AroM: AroM protein; 38.9 1E+02 0.0022 20.0 4.5 37 22-65 173-209 (221)
313 COG0528 PyrH Uridylate kinase 38.7 1.1E+02 0.0024 20.0 5.0 47 19-65 145-216 (238)
314 TIGR00737 nifR3_yhdG putative 38.7 1.2E+02 0.0026 20.2 6.8 50 16-65 149-199 (319)
315 cd08172 GlyDH-like1 Glycerol d 38.6 78 0.0017 21.3 4.2 45 15-67 64-109 (347)
316 PRK02083 imidazole glycerol ph 38.5 1.1E+02 0.0023 19.6 5.7 53 12-65 29-81 (253)
317 KOG3325 Membrane coat complex 38.5 72 0.0016 19.7 3.6 27 11-38 92-118 (183)
318 PRK00861 putative lipid kinase 38.5 83 0.0018 20.6 4.2 58 5-69 34-92 (300)
319 PF00977 His_biosynth: Histidi 38.3 27 0.00059 22.2 1.9 57 7-64 23-79 (229)
320 cd07766 DHQ_Fe-ADH Dehydroquin 38.3 93 0.002 20.6 4.5 45 15-67 66-113 (332)
321 TIGR01425 SRP54_euk signal rec 38.2 1.3E+02 0.0028 21.4 5.3 27 20-46 175-201 (429)
322 PRK06731 flhF flagellar biosyn 38.1 69 0.0015 21.1 3.8 51 16-67 143-195 (270)
323 TIGR00313 cobQ cobyric acid sy 38.1 1.5E+02 0.0032 21.2 5.7 41 26-66 121-162 (475)
324 cd01539 PBP1_GGBP Periplasmic 37.9 1.1E+02 0.0024 19.7 5.0 43 18-66 48-90 (303)
325 TIGR00035 asp_race aspartate r 37.7 95 0.0021 19.6 4.3 36 22-65 70-105 (229)
326 PLN02527 aspartate carbamoyltr 37.7 1E+02 0.0022 20.7 4.6 42 13-64 83-124 (306)
327 PRK05772 translation initiatio 37.4 1.4E+02 0.0031 20.8 5.6 44 25-68 244-290 (363)
328 cd02803 OYE_like_FMN_family Ol 37.3 1.2E+02 0.0026 20.0 5.4 50 17-66 231-289 (327)
329 PRK10696 tRNA 2-thiocytidine b 37.0 48 0.001 21.4 2.9 23 17-39 121-143 (258)
330 COG1036 Archaeal flavoproteins 36.9 47 0.001 20.7 2.7 45 26-70 87-137 (187)
331 PF00148 Oxidored_nitro: Nitro 36.9 18 0.00038 24.6 0.9 55 14-68 61-115 (398)
332 PF00551 Formyl_trans_N: Formy 36.7 56 0.0012 19.8 3.0 43 16-67 68-110 (181)
333 PF01177 Asp_Glu_race: Asp/Glu 36.7 70 0.0015 19.5 3.5 40 18-62 162-205 (216)
334 PRK08535 translation initiatio 36.6 73 0.0016 21.4 3.8 42 27-68 188-232 (310)
335 PRK01130 N-acetylmannosamine-6 36.5 1.1E+02 0.0023 19.1 4.6 45 21-65 133-180 (221)
336 TIGR03191 benz_CoA_bzdO benzoy 36.5 1.4E+02 0.0031 21.0 5.3 53 14-68 348-401 (430)
337 cd07385 MPP_YkuE_C Bacillus su 36.4 1E+02 0.0022 18.8 5.2 52 15-68 20-73 (223)
338 PRK12569 hypothetical protein; 36.4 1.1E+02 0.0023 20.2 4.4 40 14-63 127-166 (245)
339 TIGR03868 F420-O_ABCperi propo 36.3 75 0.0016 20.3 3.7 41 21-65 72-112 (287)
340 TIGR01284 alt_nitrog_alph nitr 36.1 78 0.0017 22.4 4.0 51 14-68 111-167 (457)
341 cd06533 Glyco_transf_WecG_TagA 36.0 54 0.0012 19.8 2.9 44 15-64 87-130 (171)
342 PLN02424 ketopantoate hydroxym 36.0 63 0.0014 22.2 3.4 47 21-67 49-104 (332)
343 PRK12555 chemotaxis-specific m 36.0 1.2E+02 0.0026 20.2 4.7 46 18-67 37-82 (337)
344 PRK03692 putative UDP-N-acetyl 35.9 51 0.0011 21.4 2.9 43 16-64 146-188 (243)
345 PRK06371 translation initiatio 35.7 1.5E+02 0.0032 20.4 5.8 42 25-66 213-257 (329)
346 TIGR02932 vnfK_nitrog V-contai 35.6 81 0.0018 22.4 4.0 51 14-68 76-138 (457)
347 cd00318 Phosphoglycerate_kinas 35.3 79 0.0017 22.2 3.8 49 17-66 37-88 (397)
348 cd07391 MPP_PF1019 Pyrococcus 35.3 1E+02 0.0022 18.4 4.7 54 14-68 28-85 (172)
349 smart00851 MGS MGS-like domain 35.3 73 0.0016 16.8 4.0 45 17-62 45-89 (90)
350 COG1712 Predicted dinucleotide 35.1 68 0.0015 21.1 3.3 56 6-64 63-118 (255)
351 TIGR00222 panB 3-methyl-2-oxob 35.0 1E+02 0.0023 20.4 4.2 48 20-67 28-84 (263)
352 cd03109 DTBS Dethiobiotin synt 34.8 92 0.002 17.8 3.7 20 47-66 57-76 (134)
353 PRK04284 ornithine carbamoyltr 34.7 1.1E+02 0.0025 20.8 4.5 41 13-63 87-127 (332)
354 PTZ00363 rab-GDP dissociation 34.3 52 0.0011 23.2 2.9 33 27-67 4-36 (443)
355 PF01207 Dus: Dihydrouridine s 34.3 1.4E+02 0.0031 19.9 5.4 62 4-65 123-190 (309)
356 COG0069 GltB Glutamate synthas 34.3 1.4E+02 0.0031 21.7 5.0 50 6-61 306-355 (485)
357 PRK10867 signal recognition pa 34.2 1.6E+02 0.0035 20.9 5.3 26 20-45 176-201 (433)
358 TIGR02082 metH 5-methyltetrahy 34.2 62 0.0013 26.0 3.5 52 14-67 770-822 (1178)
359 KOG3180 Electron transfer flav 34.1 57 0.0012 21.1 2.8 25 14-38 101-125 (254)
360 COG0037 MesJ tRNA(Ile)-lysidin 33.9 19 0.0004 23.4 0.6 25 17-41 110-134 (298)
361 PRK10653 D-ribose transporter 33.9 1.3E+02 0.0028 19.2 4.9 42 19-66 74-115 (295)
362 PRK13886 conjugal transfer pro 33.9 44 0.00095 21.8 2.3 48 17-64 71-119 (241)
363 PRK10966 exonuclease subunit S 33.9 1.7E+02 0.0036 20.5 6.1 52 16-67 28-83 (407)
364 COG1880 CdhB CO dehydrogenase/ 33.8 48 0.001 20.5 2.3 23 47-69 25-47 (170)
365 COG1436 NtpG Archaeal/vacuolar 33.7 63 0.0014 18.3 2.7 47 15-67 35-81 (104)
366 COG5012 Predicted cobalamin bi 33.7 52 0.0011 21.4 2.6 28 12-39 140-167 (227)
367 TIGR00379 cobB cobyrinic acid 33.7 1.5E+02 0.0033 20.9 5.1 39 27-68 77-120 (449)
368 cd01990 Alpha_ANH_like_I This 33.6 91 0.002 19.0 3.7 24 16-39 84-107 (202)
369 COG2185 Sbm Methylmalonyl-CoA 33.6 78 0.0017 19.0 3.2 49 14-64 50-98 (143)
370 PRK14048 ferrichrome/ferrioxam 33.6 1.4E+02 0.0031 20.1 4.9 38 25-66 119-156 (374)
371 KOG0830 40S ribosomal protein 33.6 78 0.0017 20.9 3.4 46 23-68 38-99 (254)
372 cd02174 CCT CTP:phosphocholine 33.4 42 0.00092 20.0 2.1 26 11-36 72-97 (150)
373 PRK08649 inosine 5-monophospha 33.3 1.7E+02 0.0036 20.3 5.7 49 15-63 142-192 (368)
374 PF10087 DUF2325: Uncharacteri 33.1 85 0.0018 16.9 3.3 17 50-66 67-83 (97)
375 PRK13010 purU formyltetrahydro 33.0 58 0.0013 21.7 2.8 23 15-37 157-179 (289)
376 PRK05784 phosphoribosylamine-- 33.0 56 0.0012 23.4 2.9 23 14-36 56-78 (486)
377 TIGR01304 IMP_DH_rel_2 IMP deh 32.8 1.7E+02 0.0037 20.3 6.4 49 15-63 143-193 (369)
378 PRK01713 ornithine carbamoyltr 32.8 1.2E+02 0.0027 20.6 4.4 42 13-64 88-129 (334)
379 cd08551 Fe-ADH iron-containing 32.7 1.5E+02 0.0033 20.0 4.9 20 16-35 69-89 (370)
380 cd06301 PBP1_rhizopine_binding 32.7 1.3E+02 0.0027 18.7 5.4 41 20-66 49-89 (272)
381 PF04900 Fcf1: Fcf1; InterPro 32.5 90 0.0019 17.0 4.2 43 13-66 51-93 (101)
382 PF14097 SpoVAE: Stage V sporu 32.4 1.3E+02 0.0028 18.8 6.1 53 9-65 4-59 (180)
383 COG1184 GCD2 Translation initi 32.4 1.6E+02 0.0035 20.0 5.0 52 12-67 128-179 (301)
384 COG2248 Predicted hydrolase (m 32.3 54 0.0012 22.0 2.5 51 12-64 186-244 (304)
385 PLN02331 phosphoribosylglycina 32.2 64 0.0014 20.4 2.8 22 16-37 67-88 (207)
386 COG2069 CdhD CO dehydrogenase/ 32.2 1.7E+02 0.0036 20.3 4.8 55 13-67 150-208 (403)
387 PF14606 Lipase_GDSL_3: GDSL-l 32.2 79 0.0017 19.6 3.2 54 13-67 45-102 (178)
388 PF00162 PGK: Phosphoglycerate 32.2 81 0.0018 22.0 3.5 46 21-66 41-90 (384)
389 PF00732 GMC_oxred_N: GMC oxid 32.2 39 0.00084 21.7 1.9 33 28-68 1-34 (296)
390 KOG3123 Diphthine synthase [Tr 32.2 75 0.0016 20.7 3.1 46 15-67 65-112 (272)
391 PRK10015 oxidoreductase; Provi 32.1 73 0.0016 22.1 3.3 31 5-35 5-36 (429)
392 PRK06096 molybdenum transport 31.9 1.6E+02 0.0035 19.7 4.9 36 5-41 236-271 (284)
393 PF02952 Fucose_iso_C: L-fucos 31.9 88 0.0019 18.1 3.2 29 5-33 113-141 (142)
394 PF01990 ATP-synt_F: ATP synth 31.7 51 0.0011 17.8 2.1 50 14-68 29-78 (95)
395 TIGR03264 met_CoM_red_C methyl 31.7 27 0.00058 22.0 1.0 42 20-67 96-137 (194)
396 CHL00199 infC translation init 31.5 92 0.002 19.5 3.4 31 15-45 41-71 (182)
397 TIGR00361 ComEC_Rec2 DNA inter 31.5 1.3E+02 0.0029 22.3 4.7 37 24-67 596-632 (662)
398 cd06318 PBP1_ABC_sugar_binding 31.4 1.3E+02 0.0029 18.7 5.9 43 18-66 46-88 (282)
399 PRK06278 cobyrinic acid a,c-di 31.3 2E+02 0.0044 20.7 5.5 42 26-68 316-360 (476)
400 PF03938 OmpH: Outer membrane 31.2 71 0.0015 18.7 2.8 22 15-36 118-139 (158)
401 PRK00143 mnmA tRNA-specific 2- 31.2 60 0.0013 22.1 2.7 24 16-39 105-128 (346)
402 PRK09802 DNA-binding transcrip 31.1 1.5E+02 0.0034 19.3 4.8 17 22-38 174-190 (269)
403 PF01008 IF-2B: Initiation fac 31.1 49 0.0011 21.5 2.2 42 27-68 176-220 (282)
404 PF00764 Arginosuc_synth: Argi 31.0 67 0.0015 22.5 2.9 27 15-41 93-119 (388)
405 PF14459 Prok-E2_C: Prokaryoti 30.9 1.1E+02 0.0025 17.7 3.7 34 15-49 42-75 (131)
406 PF13407 Peripla_BP_4: Peripla 30.9 1.2E+02 0.0026 18.7 3.9 43 19-67 47-89 (257)
407 PRK08349 hypothetical protein; 30.6 73 0.0016 19.6 2.9 22 16-37 94-115 (198)
408 PF02579 Nitro_FeMo-Co: Dinitr 30.4 88 0.0019 16.3 4.2 42 13-64 39-80 (94)
409 KOG0237 Glycinamide ribonucleo 30.3 58 0.0013 24.5 2.6 22 15-36 56-77 (788)
410 PRK13964 coaD phosphopantethei 30.2 61 0.0013 19.2 2.4 25 18-42 73-97 (140)
411 PRK14805 ornithine carbamoyltr 30.1 1.7E+02 0.0038 19.6 4.7 43 12-64 79-121 (302)
412 PRK08385 nicotinate-nucleotide 30.1 1.3E+02 0.0029 20.0 4.1 32 6-38 232-263 (278)
413 COG0541 Ffh Signal recognition 30.1 1.1E+02 0.0024 22.0 3.9 33 17-49 172-204 (451)
414 COG2257 Uncharacterized homolo 30.0 49 0.0011 18.4 1.8 19 12-30 30-48 (92)
415 cd01143 YvrC Periplasmic bindi 30.0 1.2E+02 0.0027 17.9 4.4 35 24-67 57-91 (195)
416 TIGR00177 molyb_syn molybdenum 30.0 1.2E+02 0.0026 17.7 4.4 32 4-35 41-74 (144)
417 PRK13587 1-(5-phosphoribosyl)- 29.9 1.5E+02 0.0033 18.9 5.3 53 11-63 29-81 (234)
418 PF02833 DHHA2: DHHA2 domain; 29.9 92 0.002 17.5 3.0 31 14-44 53-83 (127)
419 TIGR00655 PurU formyltetrahydr 29.8 70 0.0015 21.2 2.8 21 16-36 149-169 (280)
420 PF00381 PTS-HPr: PTS HPr comp 29.8 65 0.0014 16.9 2.3 23 14-36 17-39 (84)
421 KOG3309 Ferredoxin [Energy pro 29.7 50 0.0011 20.2 1.9 19 12-30 59-77 (159)
422 PRK11891 aspartate carbamoyltr 29.6 1.7E+02 0.0037 20.8 4.8 42 13-64 169-210 (429)
423 PRK07695 transcriptional regul 29.6 1.4E+02 0.003 18.3 5.5 45 21-65 109-156 (201)
424 PRK09490 metH B12-dependent me 29.5 78 0.0017 25.7 3.3 52 14-67 789-841 (1229)
425 PF06925 MGDG_synth: Monogalac 29.5 68 0.0015 19.1 2.5 19 16-34 78-96 (169)
426 TIGR03702 lip_kinase_YegS lipi 29.5 1.7E+02 0.0036 19.2 5.4 61 3-69 27-91 (293)
427 COG2100 Predicted Fe-S oxidore 29.2 2.1E+02 0.0045 20.1 5.5 63 2-65 188-262 (414)
428 TIGR00670 asp_carb_tr aspartat 29.2 1.7E+02 0.0038 19.6 4.6 40 13-62 82-121 (301)
429 PRK09860 putative alcohol dehy 29.1 78 0.0017 21.7 3.0 20 16-35 77-97 (383)
430 PRK09417 mogA molybdenum cofac 29.1 1.5E+02 0.0033 18.6 5.4 18 17-34 56-73 (193)
431 PLN02623 pyruvate kinase 28.8 1.2E+02 0.0026 22.6 4.0 44 15-68 465-509 (581)
432 PRK02102 ornithine carbamoyltr 28.8 1.6E+02 0.0034 20.1 4.4 33 20-62 95-127 (331)
433 COG3640 CooC CO dehydrogenase 28.7 58 0.0013 21.5 2.2 39 27-65 98-140 (255)
434 PRK13856 two-component respons 28.7 1.4E+02 0.0031 18.2 4.6 46 17-66 35-80 (241)
435 KOG3111 D-ribulose-5-phosphate 28.7 1.3E+02 0.0029 19.3 3.7 45 3-49 112-156 (224)
436 PRK05848 nicotinate-nucleotide 28.6 1.4E+02 0.0031 19.7 4.1 30 8-38 232-261 (273)
437 COG1775 HgdB Benzoyl-CoA reduc 28.6 65 0.0014 22.6 2.5 53 15-68 307-359 (379)
438 COG1570 XseA Exonuclease VII, 28.5 91 0.002 22.3 3.3 58 12-69 173-236 (440)
439 cd01995 ExsB ExsB is a transcr 28.5 86 0.0019 18.5 2.9 23 17-39 66-88 (169)
440 PRK06559 nicotinate-nucleotide 28.5 1.5E+02 0.0032 20.0 4.1 32 6-38 242-273 (290)
441 PRK10681 DNA-binding transcrip 28.5 1.7E+02 0.0036 18.9 4.7 39 26-65 134-172 (252)
442 PRK07896 nicotinate-nucleotide 28.5 1.4E+02 0.0031 20.0 4.0 33 6-39 247-279 (289)
443 PF11684 DUF3280: Protein of u 28.4 72 0.0015 19.0 2.4 22 17-38 70-91 (140)
444 PRK00073 pgk phosphoglycerate 28.4 1.3E+02 0.0029 21.1 4.0 49 17-66 40-90 (389)
445 PTZ00170 D-ribulose-5-phosphat 28.3 1E+02 0.0022 19.6 3.3 25 12-36 179-203 (228)
446 PRK14057 epimerase; Provisiona 28.3 1.8E+02 0.0039 19.2 5.0 48 5-54 134-181 (254)
447 cd01996 Alpha_ANH_like_III Thi 28.3 98 0.0021 17.8 3.1 23 17-39 92-114 (154)
448 PF04430 DUF498: Protein of un 28.2 1.2E+02 0.0025 16.9 4.4 36 27-66 53-88 (110)
449 cd07406 MPP_CG11883_N Drosophi 28.2 1E+02 0.0023 19.7 3.4 26 13-38 154-182 (257)
450 PRK05632 phosphate acetyltrans 28.2 2.6E+02 0.0056 21.0 5.8 42 26-68 75-116 (684)
451 COG3367 Uncharacterized conser 28.1 2.1E+02 0.0045 19.8 6.0 49 16-67 211-260 (339)
452 PLN02282 phosphoglycerate kina 28.0 1.4E+02 0.0029 21.2 4.0 49 17-66 47-97 (401)
453 COG2908 Uncharacterized protei 28.0 71 0.0015 20.9 2.5 29 14-42 174-202 (237)
454 PF02610 Arabinose_Isome: L-ar 28.0 77 0.0017 22.0 2.8 45 19-69 63-108 (359)
455 PF02142 MGS: MGS-like domain 27.9 15 0.00033 19.9 -0.5 44 18-62 51-94 (95)
456 cd01141 TroA_d Periplasmic bin 27.8 1.4E+02 0.003 17.7 4.6 35 24-66 66-100 (186)
457 PRK13011 formyltetrahydrofolat 27.7 76 0.0017 21.1 2.7 22 15-36 153-174 (286)
458 KOG1184 Thiamine pyrophosphate 27.7 1.6E+02 0.0034 21.8 4.3 53 14-70 200-252 (561)
459 PRK04940 hypothetical protein; 27.7 1.3E+02 0.0028 18.8 3.5 32 29-68 61-92 (180)
460 PRK09016 quinolinate phosphori 27.6 1.7E+02 0.0037 19.7 4.3 33 6-39 253-285 (296)
461 cd01712 ThiI ThiI is required 27.6 92 0.002 18.6 2.9 22 18-39 94-115 (177)
462 PF14582 Metallophos_3: Metall 27.6 56 0.0012 21.5 2.0 30 16-45 195-224 (255)
463 PRK08227 autoinducer 2 aldolas 27.5 1.9E+02 0.0041 19.2 4.6 22 47-68 181-202 (264)
464 COG0112 GlyA Glycine/serine hy 27.5 92 0.002 22.1 3.1 45 15-62 154-198 (413)
465 cd06322 PBP1_ABC_sugar_binding 27.5 1.6E+02 0.0034 18.2 5.2 44 17-66 45-88 (267)
466 COG0299 PurN Folate-dependent 27.5 88 0.0019 20.0 2.8 22 15-36 67-88 (200)
467 PRK03515 ornithine carbamoyltr 27.5 1.9E+02 0.0041 19.8 4.6 41 13-63 87-127 (336)
468 cd01537 PBP1_Repressors_Sugar_ 27.4 1.5E+02 0.0032 17.9 6.8 44 17-67 45-88 (264)
469 TIGR00024 SbcD_rel_arch putati 27.4 1.7E+02 0.0037 18.6 4.5 54 15-68 46-99 (225)
470 PRK00779 ornithine carbamoyltr 27.3 2E+02 0.0042 19.3 4.6 35 20-64 92-126 (304)
471 TIGR02931 anfK_nitrog Fe-only 27.3 1.2E+02 0.0027 21.5 3.8 50 14-67 79-141 (461)
472 PF07085 DRTGG: DRTGG domain; 27.2 1.1E+02 0.0025 16.6 3.5 21 47-67 74-94 (105)
473 cd01125 repA Hexameric Replica 27.1 1.4E+02 0.003 18.7 3.8 55 15-69 99-160 (239)
474 KOG4716 Thioredoxin reductase 27.1 42 0.0009 23.7 1.4 19 19-37 11-29 (503)
475 PRK00885 phosphoribosylamine-- 27.1 85 0.0018 21.6 2.9 23 14-36 49-71 (420)
476 TIGR01003 PTS_HPr_family Phosp 27.0 1.1E+02 0.0023 16.2 3.2 30 5-34 5-37 (82)
477 PRK08335 translation initiatio 27.0 2E+02 0.0043 19.2 5.1 42 27-68 177-221 (275)
478 PRK02842 light-independent pro 27.0 73 0.0016 22.2 2.6 27 9-35 342-368 (427)
479 cd07408 MPP_SA0022_N Staphyloc 26.9 1.1E+02 0.0023 19.6 3.2 49 14-64 154-207 (257)
480 PRK08192 aspartate carbamoyltr 26.9 2E+02 0.0043 19.7 4.6 42 12-63 86-127 (338)
481 cd01422 MGS Methylglyoxal synt 26.9 1.3E+02 0.0028 17.0 5.5 59 2-63 44-106 (115)
482 COG1411 Uncharacterized protei 26.8 1.8E+02 0.004 18.8 4.1 51 13-64 137-187 (229)
483 cd00851 MTH1175 This uncharact 26.8 1.1E+02 0.0024 16.2 4.8 41 16-66 52-92 (103)
484 COG1597 LCB5 Sphingosine kinas 26.7 2E+02 0.0043 19.2 6.2 60 3-68 33-93 (301)
485 cd01410 SIRT7 SIRT7: Eukaryoti 26.7 90 0.002 19.6 2.8 37 27-68 155-192 (206)
486 COG1830 FbaB DhnA-type fructos 26.7 2E+02 0.0044 19.2 4.7 43 17-67 169-211 (265)
487 cd05014 SIS_Kpsf KpsF-like pro 26.6 1E+02 0.0023 17.0 2.9 27 16-42 63-89 (128)
488 COG0469 PykF Pyruvate kinase [ 26.5 1.6E+02 0.0035 21.4 4.2 45 15-68 363-408 (477)
489 PRK12815 carB carbamoyl phosph 26.5 2.3E+02 0.005 22.6 5.3 58 3-63 980-1037(1068)
490 PTZ00005 phosphoglycerate kina 26.3 1.6E+02 0.0035 20.9 4.1 49 17-66 46-98 (417)
491 PF01676 Metalloenzyme: Metall 26.3 93 0.002 20.0 2.9 45 16-67 174-218 (252)
492 PRK08745 ribulose-phosphate 3- 26.3 1.8E+02 0.004 18.6 5.2 49 4-54 111-159 (223)
493 PLN03034 phosphoglycerate kina 26.3 1.5E+02 0.0034 21.5 4.1 48 18-66 123-172 (481)
494 cd04729 NanE N-acetylmannosami 26.2 1.7E+02 0.0037 18.2 4.8 45 21-65 137-184 (219)
495 PRK13602 putative ribosomal pr 26.2 1E+02 0.0022 16.4 2.6 45 17-66 17-61 (82)
496 COG0556 UvrB Helicase subunit 26.0 2.2E+02 0.0048 21.4 4.8 50 12-67 14-66 (663)
497 PF15517 TBPIP_N: TBP-interact 25.8 66 0.0014 18.0 1.8 35 3-38 38-73 (99)
498 cd01538 PBP1_ABC_xylose_bindin 25.8 1.8E+02 0.004 18.4 5.1 44 18-67 46-89 (288)
499 PRK10200 putative racemase; Pr 25.6 1E+02 0.0023 19.6 3.0 43 15-65 60-105 (230)
500 PRK11148 cyclic 3',5'-adenosin 25.6 1.9E+02 0.0041 18.6 4.3 51 17-68 43-95 (275)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.82 E-value=5.5e-20 Score=108.25 Aligned_cols=62 Identities=27% Similarity=0.466 Sum_probs=57.9
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++++++.+..|+|.++|.++++++++||||||++|++ +.++++||++++++++++||||+||
T Consensus 81 ~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred CcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 4577888999999999999999999999999999976 7888999999999999999999986
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.79 E-value=6.1e-19 Score=103.52 Aligned_cols=62 Identities=21% Similarity=0.453 Sum_probs=57.2
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++++++.+..|+|.+.|.++++++++||||||+++ +++.++++||++++|+++++||||+||
T Consensus 83 ~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 83 TDRVHVHVEEGSPKDRILELAKKIPADMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred CCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchHHHHHHhCCCCEEEeC
Confidence 45678889999999999999999999999999984 678899999999999999999999986
No 3
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.76 E-value=3.5e-18 Score=100.61 Aligned_cols=65 Identities=22% Similarity=0.349 Sum_probs=59.5
Q ss_pred cceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhhhCC--ccEEEECCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAHHAV--CPILIVKPP 67 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~~~--~Pvlvv~~~ 67 (81)
++++++.+..| ++.++|+++|+++++||||||+++++++.++++| |++.+++++++ ||||+|+.+
T Consensus 78 ~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~~ 146 (146)
T cd01989 78 GVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146 (146)
T ss_pred CCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeCc
Confidence 56778888776 8999999999999999999999999999999988 69999999999 999999863
No 4
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.70 E-value=7e-17 Score=92.49 Aligned_cols=62 Identities=37% Similarity=0.658 Sum_probs=58.2
Q ss_pred ceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 4 VNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 4 v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.........|++.++|.++++++++||||||+++++++.++++||++++++++++||||++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 79 IVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred ceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 45567778899999999999999999999999999999999999999999999999999996
No 5
>PRK11175 universal stress protein UspE; Provisional
Probab=99.69 E-value=7.7e-17 Score=104.46 Aligned_cols=62 Identities=29% Similarity=0.539 Sum_probs=57.6
Q ss_pred EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 7 ~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...+..|++.++|.++++++++||||||+++++++.++|+||++++|+++++||||++|+..
T Consensus 241 ~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 241 QTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred heeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 35567899999999999999999999999999999999999999999999999999998543
No 6
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.69 E-value=1.8e-16 Score=91.29 Aligned_cols=63 Identities=27% Similarity=0.450 Sum_probs=57.4
Q ss_pred cceEEEEEe-cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQTLIL-DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~~~~~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|++++.... .|++.++|+++++++++||||||+++++.+.++++||++.+++++++||||+++
T Consensus 69 g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 69 GVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred CCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 456676665 479999999999999999999999999999999999999999999999999985
No 7
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.69 E-value=1.8e-16 Score=92.84 Aligned_cols=62 Identities=37% Similarity=0.671 Sum_probs=58.3
Q ss_pred EEEEEecCCH-HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 6 AQTLILDGDA-RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 6 ~~~~~~~g~~-~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
++..+..|++ .+.|.+++.++++||||||+++++++.++++||++++++++++||||+++..
T Consensus 91 ~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 91 VETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVRSE 153 (154)
T ss_pred eEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEccC
Confidence 4778889998 7999999999999999999999999999999999999999999999999864
No 8
>PRK09982 universal stress protein UspD; Provisional
Probab=99.69 E-value=5.8e-17 Score=95.71 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=54.4
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++..+..|+|.+.|+++|+++++||||||++ ++++.+++ | ++++++++++||||+||...
T Consensus 81 ~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~-~-va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 81 KTKLRIERGEMPETLLEIMQKEQCDLLVCGHH-HSFINRLM-P-AYRGMINKMSADLLIVPFID 141 (142)
T ss_pred cceEEEEecCHHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH-H-HHHHHHhcCCCCEEEecCCC
Confidence 46677888999999999999999999999986 78887777 5 99999999999999998653
No 9
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.68 E-value=1.1e-16 Score=94.26 Aligned_cols=58 Identities=26% Similarity=0.287 Sum_probs=50.1
Q ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+..|+|.++|+++|+++++||||||+++ ..+ +. +||++++|+++++||||+||.+.
T Consensus 84 ~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~-~~~-~~-lgSva~~v~~~a~~pVLvv~~~~ 141 (144)
T PRK15118 84 TLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ-DFW-SK-LMSSARQLINTVHVDMLIVPLRD 141 (144)
T ss_pred EEEEecCHHHHHHHHHHHhCCCEEEEeCcc-cHH-HH-HHHHHHHHHhhCCCCEEEecCCc
Confidence 455689999999999999999999999996 333 33 58999999999999999999653
No 10
>PRK11175 universal stress protein UspE; Provisional
Probab=99.65 E-value=4.8e-16 Score=100.77 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=60.1
Q ss_pred cceEEEEEe-cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 3 QVNAQTLIL-DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 3 ~v~~~~~~~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++++..+. .|++.++|.++++++++||||||+++.+++.++++||++++++++++||||++|..
T Consensus 82 ~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 82 GIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred CCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 567777666 58999999999999999999999999999999999999999999999999999974
No 11
>PRK10116 universal stress protein UspC; Provisional
Probab=99.64 E-value=7.6e-16 Score=90.24 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=53.4
Q ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+..|++.+.|.++++++++||||||+++++.+.+++ |++++++++++||||+||.+.
T Consensus 83 ~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~--s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 83 TFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRAS--CSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred EEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHH--HHHHHHHhcCCCCEEEEeCCC
Confidence 55678999999999999999999999999998888764 899999999999999998653
No 12
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.62 E-value=1.4e-15 Score=87.38 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=52.7
Q ss_pred EecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEEC
Q 038513 10 ILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVK 65 (81)
Q Consensus 10 ~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~ 65 (81)
+..|++.+.|.++++++++|+||||+++++.+.++++||++++|++++ +|||||++
T Consensus 68 ~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 68 LPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred EeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 345789999999999999999999999999999999999999999999 99999985
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.51 E-value=9.6e-14 Score=78.71 Aligned_cols=62 Identities=42% Similarity=0.785 Sum_probs=58.0
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
++++...+..|++.++|.+++++.++|++|||+++++.+.++++|+++++++++++||||++
T Consensus 69 ~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 69 GVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred CCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 56778888889999999999999999999999999999999999999999999999999985
No 14
>PRK10490 sensor protein KdpD; Provisional
Probab=98.39 E-value=1.7e-06 Score=63.95 Aligned_cols=61 Identities=16% Similarity=0.183 Sum_probs=52.2
Q ss_pred eEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 5 NAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 5 ~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
..++....| +++++|+++|++++++.||||..+++.| ++.||+++++++.++ +.+.+|+..
T Consensus 313 Ga~~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~--~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 313 GAETATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW--WRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC--ccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 344444554 8999999999999999999999998876 557899999999999 999999754
No 15
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.21 E-value=2.2e-06 Score=46.31 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhhhCCccEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAHHAVCPILI 63 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~~~~Pvlv 63 (81)
...+.+.+.++++++|+|++|+++.+.....+.| +++..+++.++|||+.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 4567788999999999999999999988888888 8999999999999974
No 16
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.95 E-value=4.6e-05 Score=51.49 Aligned_cols=63 Identities=19% Similarity=0.112 Sum_probs=44.7
Q ss_pred ccceEEEEEec--------CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 2 VQVNAQTLILD--------GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 2 ~~v~~~~~~~~--------g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.|+++++.+.. |+|+++|+++|+++++||||||..-..+...-.+-+ -+.=+.++.|.+=..|
T Consensus 80 ~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 150 (357)
T PRK12652 80 SSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQP-LERELARAGITYEEAP 150 (357)
T ss_pred CCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCcccch-HHHHHHhcCCceecCC
Confidence 36788888765 899999999999999999999988655443333333 3445556666554443
No 17
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=97.87 E-value=4.7e-05 Score=55.84 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=58.3
Q ss_pred ceEEEEEec-CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCCCC
Q 038513 4 VNAQTLILD-GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPKEH 70 (81)
Q Consensus 4 v~~~~~~~~-g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~~~ 70 (81)
+..++.... ++.+++|.++|+++++.-||+|.+.++.|..+|.||.++++++..+ +.+.+++.....
T Consensus 310 lGae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~~~ 378 (890)
T COG2205 310 LGAEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDAPP 378 (890)
T ss_pred hCCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCCCc
Confidence 344556555 5899999999999999999999999999999999999999999998 999999865543
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.93 E-value=0.0039 Score=46.34 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc------eecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR------AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~------~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..+.|+..|++.++++|+++.|.+..... -.++.+-++|++++||+|-+.=+.
T Consensus 556 ~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDR 616 (832)
T PLN03159 556 STMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDR 616 (832)
T ss_pred ccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeC
Confidence 4789999999999999999999997543222 245677899999999999887554
No 19
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=92.22 E-value=0.33 Score=28.73 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCC-CC---CCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGL-GK---VKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~-~~---~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+.|.+++++++++.||+|-.-. ++ ......-..++.+-...++||..+.+..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 478899999999999999994322 11 1112233557777777789999997653
No 20
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=91.75 E-value=0.22 Score=28.09 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+-.+.|.++|+++++||+|+|.. ..+.-..+ ..++...+|++
T Consensus 49 ~d~~~l~~~a~~~~idlvvvGPE------~pL~~Gl~-D~l~~~gi~vf 90 (100)
T PF02844_consen 49 TDPEELADFAKENKIDLVVVGPE------APLVAGLA-DALRAAGIPVF 90 (100)
T ss_dssp T-HHHHHHHHHHTTESEEEESSH------HHHHTTHH-HHHHHTT-CEE
T ss_pred CCHHHHHHHHHHcCCCEEEECCh------HHHHHHHH-HHHHHCCCcEE
Confidence 55789999999999999999965 22333334 33444555553
No 21
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=90.70 E-value=1.5 Score=26.71 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=41.5
Q ss_pred cceEEEEEecCC----HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDGD----ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g~----~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+.+.. ...+..+.+++.++..|+-|+.+...+..+ +...++.||+=||-..
T Consensus 29 gi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGm--------vAa~T~lPViGVPv~s 90 (162)
T COG0041 29 GVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGM--------VAAKTPLPVIGVPVQS 90 (162)
T ss_pred CCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchh--------hhhcCCCCeEeccCcc
Confidence 466777776652 234455566788899999999987766543 4567899999998663
No 22
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=90.42 E-value=1.3 Score=26.13 Aligned_cols=64 Identities=14% Similarity=0.114 Sum_probs=44.5
Q ss_pred EEEEEec--CCHHHHHHHHHHhcCCCEEEEcccCCC----CCCceecCcHHHHHhhhC-CccEEEECCCCC
Q 038513 6 AQTLILD--GDARDVICQAVEQMHIDLLVVGSRGLG----KVKRAFLGSVSDYCAHHA-VCPILIVKPPKE 69 (81)
Q Consensus 6 ~~~~~~~--g~~~~~I~~~a~~~~~dliVmG~~~~~----~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~~~ 69 (81)
..+.... +...+.|.+++++++++.||+|-.-+. .......-..++.+-... ++||..+.+...
T Consensus 28 l~~i~~~~~~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 28 LETIPRRNREKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp EEEEEECCCCCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred eEEEECCCCchHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 3444444 478999999999999999999986432 111222345566777776 899999987643
No 23
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=90.39 E-value=1.4 Score=25.82 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccC-----CCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRG-----LGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~-----~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...+.|.++.++++++.||+|-.- .+... ...-..++.+-...+.||..+.+..
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a-~~v~~f~~~L~~~~~~~v~~~DEr~ 93 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLT-ERAQKFANRLEGRFGVPVVLWDERL 93 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHH-HHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 457889999999999999999332 22211 1123456777777799999997654
No 24
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=88.21 E-value=3.5 Score=25.13 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=39.0
Q ss_pred cceEEEEEecC----CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG----DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g----~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- +....+.+.+++.+++.||.++.....+ +.-+...++.||+-+|...
T Consensus 25 gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~L--------pgvva~~t~~PVIgvP~~~ 86 (156)
T TIGR01162 25 GIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHL--------PGMVAALTPLPVIGVPVPS 86 (156)
T ss_pred CCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchh--------HHHHHhccCCCEEEecCCc
Confidence 45566666554 2334455556667899999988765544 3456678899999999754
No 25
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=87.87 E-value=2 Score=24.29 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
......+.|++.++..||+-+.. |.++..+.+.-| ||++++-+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s---------G~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES---------GRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS---------SHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCeEEEEcCc
Confidence 35667788999999999987773 888999998855 999999654
No 26
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=87.83 E-value=4.2 Score=26.31 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.....+..+++++|.+|+++....... .+-++.++..+..|.+++....
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpaaPG----P~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPAAPG----PKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCC----chHHHHHHhhcCCCEEEecCCc
Confidence 345667899999999999987544322 4568999999999999997543
No 27
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=85.83 E-value=1.8 Score=28.28 Aligned_cols=62 Identities=21% Similarity=0.148 Sum_probs=45.3
Q ss_pred ccceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 2 VQVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 2 ~~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+|+++.-....|+|.+....|.++ ++|=||.=-=..+.-.+-.+-++.+++.....+|+.|=
T Consensus 19 KGv~F~~lrd~GDpVelA~~Y~e~-GADElvFlDItAs~~gr~~~~~vv~r~A~~vfiPltVG 80 (256)
T COG0107 19 KGVNFKNLRDAGDPVELAKRYNEE-GADELVFLDITASSEGRETMLDVVERVAEQVFIPLTVG 80 (256)
T ss_pred ecccccchhhcCChHHHHHHHHHc-CCCeEEEEecccccccchhHHHHHHHHHhhceeeeEec
Confidence 567776667789999988888776 77766654333444445556688899999999998875
No 28
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=85.80 E-value=2.8 Score=26.56 Aligned_cols=50 Identities=12% Similarity=0.173 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.+...+.+.+.|.|.+|.+. +....-+..+.+.+=+.+++|+++.|...
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~--gvt~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSL--GIVESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcC--CCCHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 335556777889999998662 12222223444554445789999998654
No 29
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=84.91 E-value=3.2 Score=27.96 Aligned_cols=52 Identities=15% Similarity=0.255 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+.+..++..+ ++|+||+|-.+. |-...+++..+.+.| +++++|.+.|.+-.
T Consensus 161 ~a~~~al~AI~--~ADlIvlgPGSlyTSIiPnLlv~gI~eAI-~~s~a~kV~v~N~~ 214 (310)
T TIGR01826 161 PALREAVEAIR--EADLIILGPGSLYTSIIPNLLVPEIAEAL-RESKAPKVYVCNLM 214 (310)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhchhcCchhHHHHH-HhCCCCEEEEeCCC
Confidence 56677788777 799999998763 445566666666555 66889999997653
No 30
>PRK00766 hypothetical protein; Provisional
Probab=84.67 E-value=6.7 Score=24.71 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=41.6
Q ss_pred ccceEEEEEecC-CHHHHHHHHHHh----cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 2 VQVNAQTLILDG-DARDVICQAVEQ----MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 2 ~~v~~~~~~~~g-~~~~~I~~~a~~----~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+|+-+....+.| |..+.|.+..+. .+..+|++..-.-+++. ==..+.+-+.+..||++|
T Consensus 41 dGv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFN----vvD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 41 DGVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFN----VVDIEELYRETGLPVIVV 104 (194)
T ss_pred eeEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeE----EecHHHHHHHHCCCEEEE
Confidence 344556666777 789999999876 35667777655433332 123688999999999999
No 31
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=84.58 E-value=6.8 Score=25.76 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+......+++++|++|+.+....... ..-++.++..+.+|.+|+.+..
T Consensus 49 ~~~~~~~~~~~~pDf~i~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 49 EEVVKKMLEEWKPDFVIVISPNPAAPG----PKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCCC----chHHHHHHHhcCCCEEEEcCCC
Confidence 344556678999999999876433221 3458999999999999997654
No 32
>PRK08185 hypothetical protein; Provisional
Probab=84.44 E-value=1.8 Score=28.69 Aligned_cols=55 Identities=7% Similarity=-0.077 Sum_probs=43.4
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+..+.+.......-+......+.+++++||.+-=+.
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLDH 77 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLDH 77 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3578899999999999999999887653333336778889999999998876443
No 33
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=83.74 E-value=3.5 Score=27.70 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+....++..+ ++|+||+|-... |-...+++..+.+.| +++++|.+.|.+-.
T Consensus 164 ~~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi-~~s~a~kV~v~N~~ 217 (308)
T cd07187 164 KANPEALEAIE--EADLIVYGPGSLYTSILPNLLVKGIAEAI-RASKAPKVYICNLM 217 (308)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhcCchhHHHHH-HhCCCCEEEEecCC
Confidence 46677788777 799999998763 445555666666555 77889999997643
No 34
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=83.11 E-value=1.7 Score=29.68 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..+.|++.+++.++|+++.|-.=..+-...--|.++..|-.+..+|++.-=.
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 6677889999999999999987655555555688899999999999997643
No 35
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=82.49 E-value=2.1 Score=28.40 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=26.8
Q ss_pred CCCEEEEcccCCCCCCceecC-cHHHHHhhhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLG-SVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~~~~Pvlvv~~~~ 68 (81)
++|+||++..|-+.-.=+.|. -..-+-+..+++||+.-=..+
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~~~PvisaIGHe 117 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAASPIPVISAIGHE 117 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhCCCCEEEecCCC
Confidence 599999998887633322222 224455677889988764433
No 36
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=82.39 E-value=5.9 Score=25.90 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
.+..|..++++.++|||+.|.....+-. |-+.-.+......|.+
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~t----gqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYA----QQVGLLVGEILNIPAI 143 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCC----CcHHHHHHHHhCCCce
Confidence 4667888888889999999987655433 5556666666676644
No 37
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=82.13 E-value=3.1 Score=28.32 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCC---CCCceecCcHHHHHhhh---CCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLG---KVKRAFLGSVSDYCAHH---AVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~---~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~~ 68 (81)
+..+.+++.|.+.++|+|+++.-=-. +-.+.+ ..+.+.+++ +.+||++++..-
T Consensus 27 ~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~--~~~~~~l~~l~~~~Ipv~~I~GNH 85 (390)
T COG0420 27 KAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRAL--KLFLEALRRLKDAGIPVVVIAGNH 85 (390)
T ss_pred HHHHHHHHHHHHccCCEEEEccccccCCCCCHHHH--HHHHHHHHHhccCCCcEEEecCCC
Confidence 46778899999999999999874211 111111 112233333 459999997543
No 38
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=81.52 E-value=4.9 Score=24.31 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
.+.|.+.+++.++|+|++|.+..
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccc
Confidence 46677777888899999988765
No 39
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=80.70 E-value=5 Score=27.02 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+..+.++..+ ++|+||+|-... |-...+++..+.+ -++++++|++.|.+-.
T Consensus 163 ~~~~~~l~AI~--~ADlIvlgPGSlyTSI~P~Llv~gi~e-Ai~~s~a~kV~V~ni~ 216 (309)
T cd07044 163 SPSREVLEAIE--KADNIVIGPGSLYTSILPNISVPGIRE-ALKKTXAKKVYVSNIX 216 (309)
T ss_pred CCCHHHHHHHH--hCCEEEECCCcCHHHhhhhcCcHhHHH-HHHhcCCCeEEECCCC
Confidence 46777888888 699999997763 3444555555554 4556899999997653
No 40
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=79.69 E-value=6.9 Score=23.46 Aligned_cols=24 Identities=4% Similarity=0.141 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
..+.|.+.++++++|+|++|....
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~ 94 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSF 94 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcc
Confidence 355677777777888888887753
No 41
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=79.63 E-value=5.2 Score=26.05 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+....|.+.+.+.+.|.|++|.+..-... -+-.+.+++-.+.+.|+++.|...
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~--~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEE--NVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHH--HHHHHHHHHHhhcCCCEEEecCCh
Confidence 34568888899999999999977432221 123556666668889999998764
No 42
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.35 E-value=8 Score=21.65 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGK 40 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~ 40 (81)
..+.+.+.+.+.+.++|+|.++......
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~iS~~~~~~ 63 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGLSGLLTTH 63 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 3578899999999999999998874443
No 43
>PRK06801 hypothetical protein; Provisional
Probab=79.21 E-value=4.1 Score=27.05 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+...++++.|++.+..+|+..+.+...... ..+......+.+++++||.+-=+.
T Consensus 29 e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH 83 (286)
T PRK06801 29 HFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDH 83 (286)
T ss_pred HHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 567899999999999999999887654333 346778889999999998876443
No 44
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=78.32 E-value=2.5 Score=30.84 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
..++|+.+|++++.|||++|.-
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGD 61 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGD 61 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCc
Confidence 6799999999999999999973
No 45
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=78.28 E-value=5.3 Score=26.43 Aligned_cols=55 Identities=11% Similarity=0.047 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+..+.+...... .+++.......+++++||.+-=+.
T Consensus 28 ~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlDH 83 (281)
T PRK06806 28 MEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFDH 83 (281)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3577899999999999999999876543222 245677788999999998876443
No 46
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=78.19 E-value=5.1 Score=25.90 Aligned_cols=52 Identities=13% Similarity=0.178 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
...+..++.+.+.+.|.|++|.+. ...-+..+...+-+..+.|+++.|....
T Consensus 19 ~~~~~~~~~~~~~gtDai~VGGS~----~~~~~d~vv~~ik~~~~lPvilfPg~~~ 70 (230)
T PF01884_consen 19 PNPEEALEAACESGTDAIIVGGSD----TGVTLDNVVALIKRVTDLPVILFPGSPS 70 (230)
T ss_dssp S-HHHHHHHHHCTT-SEEEEE-ST----HCHHHHHHHHHHHHHSSS-EEEETSTCC
T ss_pred CCcHHHHHHHHhcCCCEEEECCCC----CccchHHHHHHHHhcCCCCEEEeCCChh
Confidence 345666777788899999999886 1222345555666668899999986643
No 47
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=77.49 E-value=3.9 Score=27.16 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCce-ecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRA-FLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~-~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+.-+.+.-..... .+......+.+++++||.+-=+.
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDH 83 (284)
T PRK09195 28 LETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDH 83 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 36788999999999999999988765432222 35667888999999998876443
No 48
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=77.42 E-value=4.7 Score=27.99 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..++|.+..++.++++|++-+..-+.+-.-=+.++.+.+ +...+||+.+..+.
T Consensus 73 kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdDi~~v~~~~-~~~~~~vi~v~t~g 126 (427)
T cd01971 73 RLRELIKSTLSIIDADLFVVLTGCIAEIIGDDVGAVVSEF-QEGGAPIVYLETGG 126 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcCHHHHHHHh-hhcCCCEEEEECCC
Confidence 5788888888888999999988876655433333444444 45579999997543
No 49
>PRK12342 hypothetical protein; Provisional
Probab=77.19 E-value=11 Score=24.67 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+..|..+++..++|||+.|......-. |-+.-.+......|.+-
T Consensus 98 a~~La~~i~~~~~DLVl~G~~s~D~~t----gqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 98 AKALAAAIEKIGFDLLLFGEGSGDLYA----QQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCC----CCHHHHHHHHhCCCcEe
Confidence 677888888889999999987654433 56666777777777543
No 50
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=76.83 E-value=6 Score=26.88 Aligned_cols=51 Identities=24% Similarity=0.352 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..+.++..+ ++|+||+|-... |-+..+++....+.+.+ +..|++.+.+-
T Consensus 178 ~a~~eaveAI~--~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~-~~ap~i~v~n~ 230 (323)
T COG0391 178 SAAPEAVEAIK--EADLIVIGPGSLFTSILPILLLPGIAEALRE-TVAPIVYVCNL 230 (323)
T ss_pred CCCHHHHHHHH--hCCEEEEcCCccHhhhchhhchhHHHHHHHh-CCCCEEEeccC
Confidence 46667777777 799999998763 45566677777766666 88999988653
No 51
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=76.77 E-value=15 Score=26.47 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=36.9
Q ss_pred EEEEEecCCHHHHHHHH---HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 6 AQTLILDGDARDVICQA---VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~---a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
++..+..|+..+++... ....++|.||-. |+++..+-.+.++||+-++...
T Consensus 30 ~~~~v~~~~~~~~~~~a~~~~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~s~ 83 (526)
T TIGR02329 30 ANITPIQLGFEDAVREIRQRLGAERCDVVVAG------------GSNGAYLKSRLSLPVIVIKPTG 83 (526)
T ss_pred ceEEEEeccHHHHHHHHHHHHHhCCCcEEEEC------------chHHHHHHHhCCCCEEEecCCh
Confidence 34556667665555533 556689998853 8899999999999999998654
No 52
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=76.61 E-value=13 Score=21.91 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=26.9
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.++|++++-+.+.- ...+..+.....+++...+||++|-..
T Consensus 98 ~~~D~viid~~g~~-~~~~~~~~~~~dl~~~~~~~vilV~~~ 138 (166)
T TIGR00347 98 QKYDFVLVEGAGGL-CVPITEEYTTADLIKLLQLPVILVVRV 138 (166)
T ss_pred hcCCEEEEEcCCcc-ccCCCCCCcHHHHHHHhCCCEEEEECC
Confidence 57999998777631 112222334557888889999988644
No 53
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=75.52 E-value=5.2 Score=26.56 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+.-+.+.-.... ..+......+.+++++||.+-=+.
T Consensus 26 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH 81 (282)
T TIGR01858 26 LETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDH 81 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3578899999999999999998886543222 235677888999999999886443
No 54
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=75.12 E-value=3.2 Score=24.94 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-------CccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-------VCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-------~~Pvlvv~~~~ 68 (81)
..+.+.++.+++++|+|++|..+.. .+.+. .....+++.. ++||.++.+..
T Consensus 51 ~~~~l~~~i~~~kP~vI~v~g~~~~--s~~l~-~~v~~~v~~~~~~~~~~~i~V~~v~~~~ 108 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAVGGNSRE--SRKLY-DDVRDIVEELDEDEQMPPIPVVIVDDEV 108 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE--SSTH--HHHHH-HHHHHHHHHTTB-TTS-B--EEE---TT
T ss_pred HHHHHHHHHHHcCCeEEEEcCCChh--HHHHH-HHHHHHHHHhhhcccCCCceEEEECcHH
Confidence 4567888999999999999754332 22222 2233444332 58998887653
No 55
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=74.85 E-value=9.4 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...++|.+..+.+++++|++-+.--+.+-.-=+.++...+-.+.++||+.++.+.
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~~~vi~v~t~g 128 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDDIEAVAKEASKELGIPVIPVNCEG 128 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 4678888888899999999988876655433344444444445679999998553
No 56
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=74.76 E-value=5.5 Score=28.08 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.|++.+++.++|+++.|-.=..+-...--|.++..|-.+..+|++.--
T Consensus 64 a~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 64 AVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 446789999999999999998765555555568888889999999998774
No 57
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=74.67 E-value=4.5 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGK 40 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~ 40 (81)
.+.+++++.|.++++|+|.+++--.+.
T Consensus 37 v~~e~~v~aa~~~~adiVglS~L~t~~ 63 (128)
T cd02072 37 SPQEEFIDAAIETDADAILVSSLYGHG 63 (128)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccccCC
Confidence 578999999999999999998754433
No 58
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=74.66 E-value=5.6 Score=28.06 Aligned_cols=51 Identities=8% Similarity=0.082 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.|++.+++.++|+++.|-.=..+-...--|.++..|-.+..+|++.--
T Consensus 64 a~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 64 AKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 446789999999999999998755555555568888889999999998774
No 59
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=74.53 E-value=5.5 Score=24.89 Aligned_cols=23 Identities=17% Similarity=0.583 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
...|.+.+++.++|+|++|++..
T Consensus 97 a~al~~~i~~~~p~lVL~~~t~~ 119 (202)
T cd01714 97 AKALAAAIKKIGVDLILTGKQSI 119 (202)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcc
Confidence 44566766777788888887764
No 60
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=73.57 E-value=6.1 Score=26.27 Aligned_cols=55 Identities=9% Similarity=0.227 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCC-ceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVK-RAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+.-+.+..... .-++......+.+++++||.+-=+.
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLDH 83 (284)
T PRK12737 28 LETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLDH 83 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 367889999999999999998877654221 1234567888999999999876443
No 61
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=73.49 E-value=7.9 Score=26.83 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+++++|++-+.-.+.+-.-=+.++.+.+-....+||+.++-+.
T Consensus 76 kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdDi~~v~~~~~~~~~~pvi~v~t~g 130 (426)
T cd01972 76 KLEDTIKEAYSRYKPKAIFVATSCATGIIGDDVESVVEELEDEIGIPVVALHCEG 130 (426)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhccCHHHHHHHHHHhhCCCEEEEeCCc
Confidence 4677888888889999999988876554333333444444445579999997543
No 62
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=73.27 E-value=11 Score=21.00 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
-.++|.+.++++++|++|.-.. +-++-..++-+...|+|+
T Consensus 45 K~eei~~~~~~~~~d~vvfd~~--------Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 45 KVEEIKELIEELDADLVVFDNE--------LSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHHHhhcCCCEEEECCC--------CCHHHHHHHHHHHCCeee
Confidence 3467777777778888877532 223444455555555553
No 63
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=72.96 E-value=11 Score=25.96 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh----hCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH----HAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~~Pvlvv~~~~ 68 (81)
...++|.+..+.+++++|++-+.--+.+ +|...+.+++ +..+|++.++.+.
T Consensus 73 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~----iGdDi~~v~~~~~~~~~~~vi~v~t~g 127 (410)
T cd01968 73 KLYKAILEIIERYHPKAVFVYSTCVVAL----IGDDIDAVCKTASEKFGIPVIPVHSPG 127 (410)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhh----hccCHHHHHHHHHHhhCCCEEEEECCC
Confidence 4788899999999999999988866554 3555555555 4479999997543
No 64
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=72.51 E-value=7.8 Score=27.14 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...++|.+..+++++++|++-+.--+.+-.-=+.++.+++-....+||+.+..+.
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~~~vi~v~t~g 162 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTGIPVIPVDSEG 162 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 4788899999999999999988876655433333444443334679999997543
No 65
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=72.16 E-value=8.1 Score=24.46 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=36.3
Q ss_pred HHHHHHHHH-hcCCCEEEEcccCCCC-CCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVE-QMHIDLLVVGSRGLGK-VKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~-~~~~dliVmG~~~~~~-~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+-|++..+ ....|.|++-..--.. -..++=+-+.+.+.+...+||.+++.+.
T Consensus 149 g~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~~~lg~~v~vv~~~~ 203 (204)
T PF04459_consen 149 GQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEELEERLGVPVIVVRGPG 203 (204)
T ss_pred HHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHHHHHhCCcEEEeCCCC
Confidence 334444333 3344999998876554 3334447788999999999999998654
No 66
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=71.96 E-value=17 Score=23.68 Aligned_cols=56 Identities=21% Similarity=0.334 Sum_probs=38.5
Q ss_pred EEecCCHHHHHH-HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCC
Q 038513 9 LILDGDARDVIC-QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 9 ~~~~g~~~~~I~-~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~ 70 (81)
....|....++. ...+++++|.||.=..|..+....+ .-.+...+||++++.+...
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi------~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKI------EAARELGIPVIVIKRPPEP 231 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHH------HHHHHcCCeEEEEeCCCCC
Confidence 344565545544 4678889999999777665443322 5678899999999876544
No 67
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=71.70 E-value=21 Score=22.19 Aligned_cols=48 Identities=4% Similarity=0.070 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEc----ccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVG----SRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG----~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
+-.+...+.++...+|+++|. -.+.++. ...+++.+..| ++++++-..
T Consensus 34 ~~~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~------~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 34 ETVDDLAIACDSLRPSVVFINEDCFIHDASNS------QRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred CCHHHHHHHHhccCCCEEEEeCcccCCCCChH------HHHHHHHHHCCCCeEEEEECC
Confidence 334445566777789999999 3333221 35677776666 898888543
No 68
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.41 E-value=7.1 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+...++++.|++.+..+|+..+.+...... -.+......+.+++++||.+-=+.
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLDH 83 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLDH 83 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 577899999999999999998876543222 234566788899999999876443
No 69
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=71.34 E-value=10 Score=27.22 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...+.|.+..+.+++|+|++.+.-.+.+-+-=+++++..+-....+||+.+.-+
T Consensus 72 kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~~~pVi~v~t~ 125 (513)
T CHL00076 72 KVVDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRASIESDSDVILADVN 125 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhhcccCCCEEEeCCC
Confidence 467788888898999999999987765543333444444333466899988755
No 70
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=71.31 E-value=6 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
.+.+.+++.|.++++|+|.|++.-.
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~ 63 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYG 63 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccc
Confidence 5789999999999999999987643
No 71
>PRK06247 pyruvate kinase; Provisional
Probab=71.25 E-value=11 Score=27.03 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+....+.|+..++.+||+-+.. |+++..+.+.=| ||++.+-+..
T Consensus 357 ia~sa~~~A~~l~a~~Iv~~T~s---------G~ta~~isk~RP~~pI~a~t~~~ 402 (476)
T PRK06247 357 ISYAARDIAERLDLAALVAYTSS---------GDTALRAARERPPLPILALTPNP 402 (476)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 44555677888899999997653 888988888755 9999997654
No 72
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=71.16 E-value=8.5 Score=25.50 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+.-+.+...... ..+......+.+++++||.+-=+.
T Consensus 23 ~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH 78 (276)
T cd00947 23 LETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDH 78 (276)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3678899999999999999998876543322 235677788899999999887544
No 73
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=70.76 E-value=9.1 Score=26.49 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..+.|.+..+++++++|++-+..-+.+..-=+.++++.+-....+||+.++.+.
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~~~~vi~v~t~g 126 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDLQNFVRAAGLSSKSPVLPLDVNH 126 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCHHHHHHHhhhccCCCeEEecCCC
Confidence 3788899999999999999988866554332233334333334569999987553
No 74
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=70.56 E-value=5.7 Score=27.98 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
-.+.|+++|+++++||.|+|..
T Consensus 51 ~~~~lv~fA~~~~idl~vVGPE 72 (428)
T COG0151 51 DHEALVAFAKEKNVDLVVVGPE 72 (428)
T ss_pred CHHHHHHHHHHcCCCEEEECCc
Confidence 3689999999999999999974
No 75
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=70.03 E-value=8.9 Score=26.30 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCC-Cce---------------ecCcHHHHHhhhCCccEEEECCCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKV-KRA---------------FLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~~~---------------~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
-+...++++.|++.+..+|+.-+.+.... ... .+......+.+++++||.+-=+..
T Consensus 26 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg 97 (345)
T cd00946 26 SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHC 97 (345)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 35788999999999999999998874322 221 356667889999999988765444
No 76
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=69.95 E-value=5.1 Score=28.04 Aligned_cols=58 Identities=17% Similarity=0.199 Sum_probs=33.8
Q ss_pred ecC-CHHHHHHHHH----HhcCCCEEEEcccCCCCCCceecC-cHHHHHhhhCCccEEEECCCC
Q 038513 11 LDG-DARDVICQAV----EQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 11 ~~g-~~~~~I~~~a----~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.| .....|++.. ...++|+||++..|-+.-.=+.|. -..-+-+..+++||+.-=..+
T Consensus 166 vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvis~iGHe 229 (432)
T TIGR00237 166 VQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPIISAVGHE 229 (432)
T ss_pred ccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEEEecCcC
Confidence 345 3444454433 233489999998887643322232 233455678899998765443
No 77
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=69.92 E-value=15 Score=22.75 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC---ccEEEEC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV---CPILIVK 65 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~---~Pvlvv~ 65 (81)
.-|.+.+.+.++++++|+|.++......... +....+.+-+..+ +++++--
T Consensus 119 ~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~lr~~~~~~~~~i~vGG 172 (201)
T cd02070 119 DVPPEEFVEAVKEHKPDILGLSALMTTTMGG--MKEVIEALKEAGLRDKVKVMVGG 172 (201)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHHCCCCcCCeEEEEC
Confidence 4689999999999999999999865444332 2344444444432 4555543
No 78
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=69.92 E-value=14 Score=22.07 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCC----CCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLG----KVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~----~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+.|.+..++++++.||+|-.-.- ....-..-..++.+-.+.+.||.++-+.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 6789999999999999999976421 1122123345677778888999999765
No 79
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=69.88 E-value=22 Score=23.99 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+..+.++..+ ++|+||+|-... |-...+.+..+.+.+ ++.||+.|-+
T Consensus 174 ~a~p~vl~AI~--~AD~IiiGPgnp~TSI~P~L~v~gi~eAL---~~a~vV~Vsp 223 (303)
T PRK13606 174 KPAPGVLEAIE--EADAVIIGPSNPVTSIGPILAVPGIREAL---TEAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHhhchhccchhHHHHH---hCCCEEEEcC
Confidence 47778888887 799999998763 445566677788888 7889886643
No 80
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=69.60 E-value=8.1 Score=23.59 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=29.6
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.++|++++-..+... .....+..-.++++...+||++|-..
T Consensus 98 ~~~D~vlVEGag~~~-~~~~~~~~n~dia~~L~a~vIlV~~~ 138 (199)
T PF13500_consen 98 EEYDVVLVEGAGGLM-VPIFSGDLNADIAKALGAPVILVASG 138 (199)
T ss_dssp TTTCEEEEEESSSTT-SECCTTEEHHHHHHHHT-EEEEEEES
T ss_pred hcCCEEEEeCCcccC-cccccChHHHHHHHHcCCCEEEEeCC
Confidence 388998887776554 34445666779999999999999544
No 81
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=69.42 E-value=8.2 Score=27.41 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~ 70 (81)
..+.|.+..+++++++|++-+.=.+.+-..=+.+++.++-....+||+.++.+.-.
T Consensus 85 L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 85 LKRLCLQIKKDRNPSVIVWIGTCTTEIIKMDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHhCCCCEEEEEccCcHHhhccCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 56788889999999999988776666655556666666666778999999876543
No 82
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=69.39 E-value=9.2 Score=25.49 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCC-CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGK-VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~-~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-....++++.|++.+..+|+..+.+.-. .....+.+....+.+++++||.+-=+.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDH 83 (286)
T PRK12738 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDH 83 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4678899999999999999997776532 222234577888899999999987443
No 83
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=69.30 E-value=5.5 Score=27.75 Aligned_cols=55 Identities=11% Similarity=-0.023 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
..+.|.+.++++++|=+|.-...--.....-....-+.+.....+|+|.+-....
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~D~~ 392 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIETDLV 392 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 4677889999999999999777544333221122335555668999999965543
No 84
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=69.26 E-value=19 Score=25.76 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPPKE 69 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~~~ 69 (81)
.+....+.|++.+++.||+-+.. |.++..+.+. .+||++.+-+...
T Consensus 363 ia~sAv~~A~~l~akaIVv~T~S---------G~TA~~lS~~RP~~pIiavT~~~~ 409 (480)
T cd00288 363 VAMSAVRAAFELGAKAIVVLTTS---------GRTARLVSKYRPNAPIIAVTRNEQ 409 (480)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCCHH
Confidence 44455677888899999987763 8888888877 4599999976543
No 85
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=68.72 E-value=32 Score=25.15 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=38.9
Q ss_pred cceEEEEEecC----CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG----DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g----~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- +....+.+.+++.+++.||.++.....+ +.-+...+++||+=||...
T Consensus 437 g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l--------~~~~a~~t~~pvi~vp~~~ 498 (577)
T PLN02948 437 GVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHL--------PGMVASMTPLPVIGVPVKT 498 (577)
T ss_pred CCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccc--------hHHHhhccCCCEEEcCCCC
Confidence 35555555543 2334556667778899988888765544 3356677899999999754
No 86
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=68.18 E-value=24 Score=21.82 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=26.8
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.++|++++-..+.- ......+-....++....+|+++|-..
T Consensus 102 ~~~D~viIEg~gg~-~~~~~~~~~~adl~~~l~~pvilV~~~ 142 (222)
T PRK00090 102 QQYDLVLVEGAGGL-LVPLTEDLTLADLAKQLQLPVILVVGV 142 (222)
T ss_pred hhCCEEEEECCCce-eccCCCCCcHHHHHHHhCCCEEEEECC
Confidence 47999998776521 112223435667888899999888543
No 87
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=68.11 E-value=24 Score=25.67 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=27.9
Q ss_pred HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 23 VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
....++|.||-. |+++..+-.+.++||+-++-..
T Consensus 60 ~~~~~~dviIsr------------G~ta~~i~~~~~iPVv~i~~s~ 93 (538)
T PRK15424 60 LATERCDAIIAA------------GSNGAYLKSRLSVPVILIKPSG 93 (538)
T ss_pred HhhCCCcEEEEC------------chHHHHHHhhCCCCEEEecCCH
Confidence 445688998863 8999999999999999998654
No 88
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=67.71 E-value=7 Score=26.80 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=38.7
Q ss_pred CCHHHHHHHHH--HhcC-CCEEEEcccCCCC----CCceecCcHHHHHhhhCCccEEEECC
Q 038513 13 GDARDVICQAV--EQMH-IDLLVVGSRGLGK----VKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a--~~~~-~dliVmG~~~~~~----~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
|+....+...+ .-++ +=|+++|.+|..+ .++..+|..+..+++...+|..+++.
T Consensus 63 Gn~vN~l~SL~~~~~y~iP~l~~i~~RG~~g~~depqh~~~G~~t~~lL~~~~i~~~~~~~ 123 (361)
T TIGR03297 63 GNAVNPLTSLADTEVYDIPLLLIVGWRGEPGVHDEPQHVKQGRITLSLLDALEIPWEVLST 123 (361)
T ss_pred hhhhhHHHhhccccccCcCeeEEEecCCCCCCCCCchhhHHhHHHHHHHHHcCCCEEECCC
Confidence 45566666664 3223 3347888888654 44566899999999999999999964
No 89
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=67.65 E-value=14 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+....+.|+..++++||+=+.. |+++..+.+.=| ||++.+-+..
T Consensus 361 ia~~a~~~a~~~~akaIVv~T~S---------G~TA~~vSr~rp~~PIiAvT~~~ 406 (473)
T TIGR01064 361 IALSAVEAAEKLDAKAIVVLTES---------GRTARLLSKYRPNAPIIAVTPNE 406 (473)
T ss_pred HHHHHHHHHhhcCCCEEEEEcCC---------hHHHHHHHhhCCCCCEEEEcCCH
Confidence 44556677888999999997663 888888888755 9999997653
No 90
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=67.42 E-value=27 Score=22.08 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...+.+.+.+.++|.|++......+......-....++.+.+++||+..-
T Consensus 151 ~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~G 200 (243)
T cd04731 151 AVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASG 200 (243)
T ss_pred HHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeC
Confidence 44566777888999777755444332222223556788888899998875
No 91
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=67.13 E-value=5.3 Score=23.75 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=39.2
Q ss_pred ceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 4 VNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 4 v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
......+..|++.+.+.+++++.+++.|+....-..... -......+.+....+.+..+...
T Consensus 65 ~g~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~--~rd~~v~~~l~~~~i~~~~~~~~ 126 (165)
T PF00875_consen 65 LGIPLLVLRGDPEEVLPELAKEYGATAVYFNEEYTPYER--RRDERVRKALKKHGIKVHTFDDH 126 (165)
T ss_dssp TTS-EEEEESSHHHHHHHHHHHHTESEEEEE---SHHHH--HHHHHHHHHHHHTTSEEEEE--S
T ss_pred cCcceEEEecchHHHHHHHHHhcCcCeeEeccccCHHHH--HHHHHHHHHHHhcceEEEEECCc
Confidence 345667889999999999999999999998765332111 11233445566667888777643
No 92
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=66.81 E-value=12 Score=25.78 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC-Cc---ee------------cCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV-KR---AF------------LGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~-~~---~~------------~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+...++++.|++.+..+|+.-+.+.... .. .. +......+.+++++||.+-=+..
T Consensus 32 e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg 102 (350)
T PRK09197 32 DSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHC 102 (350)
T ss_pred HHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 5678999999999999999988764432 10 11 34567888899999988765443
No 93
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=66.69 E-value=32 Score=22.23 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCCE-EEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDL-LVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dl-iVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.+.+.+.++ ++|| ||||+...-.... +.. ...+....|+++|...+
T Consensus 162 ~~~~~~~~~~--~~DlllviGTSl~V~pa~----~l~-~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 162 YMDEIESVMS--KTDLFVAVGTSGNVYPAA----GFV-GRAQFYGATTLELNLEE 209 (242)
T ss_pred cHHHHHHHHH--hCCEEEEEccCCccccHH----HHH-HHHHHcCCeEEEECCCC
Confidence 4556666655 6888 7778775432221 112 33566789999998665
No 94
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=66.65 E-value=37 Score=22.94 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+..+.++..+ ++|+||+|-... |-...+++.... +-+++++.|++.|-+
T Consensus 172 ~~~p~vl~AI~--~AD~IVlGPgsp~TSI~P~LlVpgI~-eAL~~s~A~vV~Vsp 223 (303)
T cd07186 172 RPAPEVLEAIE--DADLVIIGPSNPVTSIGPILALPGIR-EALRDKKAPVVAVSP 223 (303)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhccchhHH-HHHHhCCCCEEEEcC
Confidence 57778888888 699999998753 334444454444 455778889988864
No 95
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=66.64 E-value=26 Score=21.17 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=34.4
Q ss_pred cceEEEEEecC-CHHHHHHHHHHh---cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVEQ---MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~~---~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
|++++..+..- ...+.+.+++++ .+++.+|.++..... .+.-+.-.++.||+-+|....
T Consensus 27 gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~--------Lpgvva~~t~~PVIgvP~~~~ 89 (150)
T PF00731_consen 27 GIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAA--------LPGVVASLTTLPVIGVPVSSG 89 (150)
T ss_dssp T-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS----------HHHHHHHHSSS-EEEEEE-ST
T ss_pred CCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCccc--------chhhheeccCCCEEEeecCcc
Confidence 45666666554 334556666554 457888887775433 355677788999999986543
No 96
>PLN02762 pyruvate kinase complex alpha subunit
Probab=66.61 E-value=16 Score=26.47 Aligned_cols=45 Identities=13% Similarity=0.343 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+....+.|+..++.+||+=++. |+++..+.+.=| ||++.+-+..
T Consensus 397 ia~sa~~~A~~l~a~aIv~~T~s---------G~tA~~iSk~RP~~pIia~t~~~ 442 (509)
T PLN02762 397 ICNSAAKMANNLGVDAIFVYTKH---------GHMASLLSRNRPDCPIFAFTDTT 442 (509)
T ss_pred HHHHHHHHHhhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 44455677888999999997663 888988888855 9999997654
No 97
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=66.38 E-value=12 Score=26.43 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...++|.+..+++++++|++-+.--+.+-.-=+.++...+-...++||+.|+.+
T Consensus 106 kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~~pvi~v~t~ 159 (475)
T PRK14478 106 KLFKAIDEIIEKYAPPAVFVYQTCVVALIGDDIDAVCKRAAEKFGIPVIPVNSP 159 (475)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHHHHHHHHhhCCCEEEEECC
Confidence 478889999999999999998876665433333344444333457999999644
No 98
>PRK06354 pyruvate kinase; Provisional
Probab=66.26 E-value=14 Score=27.12 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
+....+.|...++++||+-+.. |+++..+.+.=| ||++.+-+..
T Consensus 366 a~aa~~~a~~~~a~~Iv~~T~s---------G~ta~~vsk~Rp~~pI~a~t~~~ 410 (590)
T PRK06354 366 SQAVSHIALQLDAAAIVTLTKS---------GATARNVSKYRPKTPILAVTPNE 410 (590)
T ss_pred HHHHHHHHhhcCCCEEEEECCC---------hHHHHHHHhhCCCCCEEEECCCH
Confidence 3445567788899999997653 888999998755 9999997653
No 99
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=66.23 E-value=9.5 Score=25.39 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....++++.|++.+..+|+..+.+.-.... ..+......+.+++.+||.+-=+.
T Consensus 29 e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH 83 (283)
T PRK07998 29 ETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDH 83 (283)
T ss_pred HHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcC
Confidence 467889999999999999998776432222 234567788889999999876443
No 100
>PF01933 UPF0052: Uncharacterised protein family UPF0052; InterPro: IPR002882 This entry contains LPPG:Fo 2-phospho-L-lactate transferase (CofD) and related sequences of unknown function belong to unidentified protein family UPF0052. CofD catalyses the fourth step in the biosynthesis of coenzyme F420, which is the transfer of the 2-phospholactate moiety from lactyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO) with the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP. F420 is a flavin derivative found in methanogens, Mycobacteria, and several other lineages. This enzyme is characterised so far in Methanocaldococcus jannaschii (Methanococcus jannaschii) [] but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. ; PDB: 2HZB_A 2O2Z_C 3CGW_A 3C3E_D 3C3D_D 2PPV_A 2P0Y_A 2Q7X_B.
Probab=65.70 E-value=11 Score=25.30 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+....++..+ ++|+||+|-... |-...+++.. ..+-++++++|++.|.+-.
T Consensus 172 ~~~p~~l~AI~--~AD~IiigPgs~~TSI~P~L~v~g-i~~Ai~~s~a~kV~V~ni~ 225 (300)
T PF01933_consen 172 KANPEALEAIE--EADLIIIGPGSLYTSIIPNLLVPG-IREAIRESKAPKVYVSNIM 225 (300)
T ss_dssp -B-HHHHHHHH--H-SEEEE-SS-CCCCCHHHHTSHH-HHHHHHHSSSEEEEE-SSB
T ss_pred CCCHHHHHHHH--hCCEEEEcCCCchhhhcccccchh-HHHHHHhCCCCEEEEcCCC
Confidence 46677788777 699999997753 2222333333 4566777779999997654
No 101
>PRK02929 L-arabinose isomerase; Provisional
Probab=65.68 E-value=45 Score=24.06 Aligned_cols=47 Identities=9% Similarity=0.015 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHhcC----CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVICQAVEQMH----IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I~~~a~~~~----~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+..+.|.+..++.+ +|.|++--+.-++ .+..-.+++...+|||+...
T Consensus 55 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~------a~~~i~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 55 TTPDEITAVCREANYDDNCAGVITWMHTFSP------AKMWIRGLSALQKPLLHLHT 105 (499)
T ss_pred CCHHHHHHHHHHccccCCCcEEEEccCCCch------HHHHHHHHHHcCCCEEEEec
Confidence 34455556666555 9999997664433 34566778999999999976
No 102
>PHA02546 47 endonuclease subunit; Provisional
Probab=65.16 E-value=29 Score=23.41 Aligned_cols=54 Identities=6% Similarity=-0.103 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCC---Cce---ecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKV---KRA---FLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~---~~~---~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+.++++++++++|+|+++.-=-... ... ++-...-..+..+++||++++..-
T Consensus 27 ~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNH 86 (340)
T PHA02546 27 FIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLHVLVGNH 86 (340)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCC
Confidence 467788899999999999876422211 100 111111224556789999997543
No 103
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=65.02 E-value=13 Score=24.21 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=36.6
Q ss_pred EecCCHHHHHH-HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 10 ILDGDARDVIC-QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 10 ~~~g~~~~~I~-~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
...|....++. ...+++++|.+|.=..|.++...-+ ...+...+||++++.+..
T Consensus 172 am~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi------~AA~~lgi~vivI~RP~~ 226 (248)
T PRK08057 172 ALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKL------EAARELGIPVVMIARPAL 226 (248)
T ss_pred EeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHH------HHHHHcCCeEEEEeCCCC
Confidence 34454444443 4678899999999777655333222 678888999999987753
No 104
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.91 E-value=26 Score=24.42 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=34.1
Q ss_pred ecC-CHHHHHHHHHHhcC---CCEEEEcccCCCCCCceec-CcHHHHHhhhCCccEEEECCCC
Q 038513 11 LDG-DARDVICQAVEQMH---IDLLVVGSRGLGKVKRAFL-GSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 11 ~~g-~~~~~I~~~a~~~~---~dliVmG~~~~~~~~~~~~-gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.| .....|++..+..+ +|+||++..|-+.-.=+.| .-..-+-+..+++||+.-=..+
T Consensus 172 vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvis~IGHE 234 (438)
T PRK00286 172 VQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVISAVGHE 234 (438)
T ss_pred CcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEEEeccCC
Confidence 345 35555655443333 6999999988763222222 2234556677899988765443
No 105
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=64.65 E-value=38 Score=22.41 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+...+..+++++|++|+.+...... -..-++.++....+|.+++.+.
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~P----GP~~ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAP----GPTKAREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSH----HHHHHHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCC----CcHHHHHHHHhCCCCEEEEcCC
Confidence 4455666799999999987643321 1234789999999999999654
No 106
>PRK09206 pyruvate kinase; Provisional
Probab=64.55 E-value=17 Score=26.03 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+....+.|.+.++.+||+=+.+ |+++..+.+.=| ||++.+-+..
T Consensus 358 ia~sa~~~A~~l~a~aIv~~T~s---------G~tA~~is~~RP~~pIia~t~~~ 403 (470)
T PRK09206 358 VCRGAVETAEKLDAPLIVVATQG---------GKSARSVRKYFPDATILALTTNE 403 (470)
T ss_pred HHHHHHHHHhcCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 44555677888999999997663 888999987744 9999997653
No 107
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=64.47 E-value=6.7 Score=21.95 Aligned_cols=41 Identities=5% Similarity=-0.008 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
++.+... ++|+|++|.+-+..+ ...++......+||.+++.
T Consensus 40 e~~~~~~--~~Dvill~PQv~~~~------~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 40 SHYDMIP--DYDLVILAPQMASYY------DELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHhcc--CCCEEEEcChHHHHH------HHHHHHhhhcCCCEEEeCH
Confidence 3444444 678888877633222 3355667777899998874
No 108
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=64.38 E-value=11 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
.|.+.+.+.+.+.++|.|+++.....
T Consensus 37 vp~e~~~~~a~~~~~d~V~iS~~~~~ 62 (122)
T cd02071 37 QTPEEIVEAAIQEDVDVIGLSSLSGG 62 (122)
T ss_pred CCHHHHHHHHHHcCCCEEEEcccchh
Confidence 68899999999999999999887543
No 109
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=64.22 E-value=12 Score=25.76 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=27.4
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
.|+||+|+. ++|++..+++....--||||.....
T Consensus 2 fd~lIVGaG--------lsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAG--------LSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCc--------hhHHHHHHHHHHcCCEEEEEecccc
Confidence 588999865 5689988899999999999965543
No 110
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=64.02 E-value=13 Score=24.62 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCC-C-ceecCcHHHHHhhhCC-ccEEEECC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKV-K-RAFLGSVSDYCAHHAV-CPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~-~~~~gs~~~~vi~~~~-~Pvlvv~~ 66 (81)
-+...++++.|++.+..+|+.-+.+.... . -..+......+.++++ +||.+--.
T Consensus 26 ~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlD 82 (282)
T TIGR01859 26 LEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLD 82 (282)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECC
Confidence 35688999999999999999987765432 2 1234567788888998 99887754
No 111
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=63.78 E-value=42 Score=22.58 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=33.7
Q ss_pred ceEEEEEecCC----HHHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 4 VNAQTLILDGD----ARDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 4 v~~~~~~~~g~----~~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.+......|+ ..+.+.+.+++.++|+|| +|...- -.++..+......|++.||..
T Consensus 50 i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~--------~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 50 IVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT--------LDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred CeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH--------HHHHHHHHHHcCCCEEEeCCc
Confidence 33444444554 344567778888999987 553321 223344444457899999964
No 112
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=63.28 E-value=10 Score=22.46 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
..+.|.+.+++.++|+|++|....+ ...+-++..+..+|++
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g-------~~la~~lA~~L~~~~v 118 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFG-------RDLAPRLAARLGAPLV 118 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHH-------HHHHHHHHHHHT-EEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCC-------CcHHHHHHHHhCCCcc
Confidence 4567889999999999999976433 2256666666666654
No 113
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=63.27 E-value=15 Score=22.77 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=29.6
Q ss_pred CHHHHH---HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEE
Q 038513 14 DARDVI---CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIV 64 (81)
Q Consensus 14 ~~~~~I---~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv 64 (81)
++.+.+ ++..+..++|+|++-+.|++......+.... .+++. .+..+++|
T Consensus 67 ~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~-~~~~~~~~~~~~LV 120 (196)
T PF00448_consen 67 DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELK-KLLEALNPDEVHLV 120 (196)
T ss_dssp CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHH-HHHHHHSSSEEEEE
T ss_pred hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHH-HHhhhcCCccceEE
Confidence 455544 3445567899999999999876654443333 33333 35555555
No 114
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=63.23 E-value=18 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.-++.+.|++.++|-+++.........+--+-..-++|+..++.|+++...+
T Consensus 84 ~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 84 AIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 3345578999999988888664433222222345677888889999998654
No 115
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=63.19 E-value=14 Score=21.62 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH 55 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~ 55 (81)
.+.+++++.|.++++|.|++.+...+.... +..+.+.+-.
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~--~~~~~~~L~~ 79 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTL--VPALRKELDK 79 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHH--HHHHHHHHHh
Confidence 467889999999999999998875443322 3455555544
No 116
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.65 E-value=22 Score=22.92 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCc-----eecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKR-----AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~-----~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+.+++.+.++++|+|+++.-=-..... .++-....++....++||+++...
T Consensus 28 l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GN 84 (253)
T TIGR00619 28 LDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGN 84 (253)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 4678888999999988887542221110 001112222222334899999644
No 117
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.52 E-value=11 Score=22.10 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
.|.+.+.+.+.++++|+|.++....+
T Consensus 41 vp~e~i~~~a~~~~~d~V~lS~~~~~ 66 (137)
T PRK02261 41 TSQEEFIDAAIETDADAILVSSLYGH 66 (137)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCcccc
Confidence 68899999999999999999876543
No 118
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=62.18 E-value=27 Score=20.57 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEHH 71 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~~ 71 (81)
.+.+.+.++..++|+|++-+.|.+ +.....+..+.-.++++.+...+.
T Consensus 80 ~~~~~~~~~~~~~D~iiIDtaG~~--------~~~~~~~~~Ad~~ivv~tpe~~D~ 127 (148)
T cd03114 80 TPEVIRVLDAAGFDVIIVETVGVG--------QSEVDIASMADTTVVVMAPGAGDD 127 (148)
T ss_pred HHHHHHHHHhcCCCEEEEECCccC--------hhhhhHHHhCCEEEEEECCCchhH
Confidence 455667777779999999985532 333458888998888887764433
No 119
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=62.13 E-value=27 Score=22.38 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPKE 69 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~~ 69 (81)
.+.+.+.+.+.+.|.|++|.+..-. .-+..+.+.+-+... .|+++.|....
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~~v~---~~~~~~~~~ik~~~~~~Pvilfp~~~~ 65 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSDGVS---STLDNVVRLIKRIRRPVPVILFPSNPE 65 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCccchh---hhHHHHHHHHHHhcCCCCEEEeCCCcc
Confidence 4567788888899999999774221 112233333333333 99999987654
No 120
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=62.09 E-value=37 Score=21.33 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...+.+..++.++|.|++......+...-..=....++.+.++.||+..-.
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GG 205 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGG 205 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECC
Confidence 345666677789998887765443322222235567888888999988753
No 121
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=61.98 E-value=18 Score=23.64 Aligned_cols=54 Identities=15% Similarity=0.252 Sum_probs=36.3
Q ss_pred EEecCCHHHHHH-HHHHhcCCCEEEEcccCCCCCCceecCcHHH--HHhhhCCccEEEECCCCC
Q 038513 9 LILDGDARDVIC-QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSD--YCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 9 ~~~~g~~~~~I~-~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~--~vi~~~~~Pvlvv~~~~~ 69 (81)
....|....+.. ...+++++|.||.=-.|.+ |.+.+ +..+...+||+++..+..
T Consensus 178 ia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~-------Gg~~eKi~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 178 IAMRGPFSEELEKALLREYRIDAVVTKASGEQ-------GGELEKVKAAEALGINVIRIARPQT 234 (256)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCc-------cchHHHHHHHHHcCCcEEEEeCCCC
Confidence 334554444444 4678899999998777654 22222 567788899999987753
No 122
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=61.72 E-value=24 Score=21.54 Aligned_cols=46 Identities=24% Similarity=0.239 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHh--hhCCccEEEECC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCA--HHAVCPILIVKP 66 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi--~~~~~Pvlvv~~ 66 (81)
..++.+-+.++||+|+...|+..... +.....+. -...+|||+.=+
T Consensus 84 ~~l~~al~~~~DLlivNkFGk~Ea~G---~Glr~~i~~A~~~giPVLt~V~ 131 (159)
T PF10649_consen 84 AALRRALAEGADLLIVNKFGKQEAEG---RGLRDEIAAALAAGIPVLTAVP 131 (159)
T ss_pred HHHHHHHhcCCCEEEEcccHHhhhcC---CCHHHHHHHHHHCCCCEEEEEC
Confidence 34455666689999999988764443 22233332 345699998743
No 123
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=61.52 E-value=33 Score=23.68 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....-.+.+.+.+.|.|.|.-.-.. .. --.+.+.+++..++||+++-.-
T Consensus 35 ng~~a~~~~~~~~PDVi~ld~emp~-md---gl~~l~~im~~~p~pVimvssl 83 (350)
T COG2201 35 NGREAIDKVKKLKPDVITLDVEMPV-MD---GLEALRKIMRLRPLPVIMVSSL 83 (350)
T ss_pred CHHHHHHHHHhcCCCEEEEeccccc-cc---HHHHHHHHhcCCCCcEEEEecc
Confidence 3455566777789999999865221 11 1245789999999999999653
No 124
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=61.16 E-value=33 Score=21.90 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHH--HHHhhhCCccEEEECCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVS--DYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~--~~vi~~~~~Pvlvv~~~~~ 69 (81)
..+.+.+.+++.++|++|...-=.+.... ..... -+.+....+|+++|+..-+
T Consensus 19 ~le~l~~~~~~~~~D~vv~~GDl~~~g~~--~~~~~~~l~~l~~l~~pv~~V~GNhD 73 (224)
T cd07388 19 ALEKLVGLAPETGADAIVLIGNLLPKAAK--SEDYAAFFRILGEAHLPTFYVPGPQD 73 (224)
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCCCCCC--HHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 56778888888899998886442221100 00111 1224455789999986543
No 125
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=60.87 E-value=17 Score=24.97 Aligned_cols=55 Identities=22% Similarity=0.164 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCC-ccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
-....++++.|++.+..+|+..+.+...... -++......+..+++ +||.+-=+.
T Consensus 28 ~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLDH 84 (347)
T PRK13399 28 MEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQDH 84 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECCC
Confidence 3678899999999999999999887543322 335667778888885 998876443
No 126
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.36 E-value=29 Score=20.96 Aligned_cols=49 Identities=10% Similarity=0.310 Sum_probs=27.9
Q ss_pred EEEEecCCHHHHHH--HHH-HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 7 QTLILDGDARDVIC--QAV-EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 7 ~~~~~~g~~~~~I~--~~a-~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..+..+...+.+. +.. ...++|.||-. |.+++.+-++.+.||+-++..
T Consensus 11 ~i~v~~~~~e~~v~~a~~~~~~~g~dViIsR------------G~ta~~lr~~~~iPVV~I~~s 62 (176)
T PF06506_consen 11 EIDVIEASLEEAVEEARQLLESEGADVIISR------------GGTAELLRKHVSIPVVEIPIS 62 (176)
T ss_dssp EEEEEE--HHHHHHHHHHHHTTTT-SEEEEE------------HHHHHHHHCC-SS-EEEE---
T ss_pred eEEEEEecHHHHHHHHHHhhHhcCCeEEEEC------------CHHHHHHHHhCCCCEEEECCC
Confidence 34455554433333 333 55789999863 788888888889999999865
No 127
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=60.16 E-value=26 Score=23.03 Aligned_cols=54 Identities=7% Similarity=0.052 Sum_probs=36.0
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ ..+.|++.++|-+++-........+--+-..-+.|+..++.|+++...+
T Consensus 84 ~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 84 NTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 34444 4578899999999988764333222112234567888899999999754
No 128
>PRK05826 pyruvate kinase; Provisional
Probab=59.46 E-value=25 Score=25.07 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcC-CCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMH-IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~-~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+....+.|.+.+ +++||+=+.. |+++..+.+.=| ||++.+-+..
T Consensus 360 ia~aa~~~a~~l~~a~~Ivv~T~s---------G~ta~~isk~RP~~pI~~~t~~~ 406 (465)
T PRK05826 360 IAMSAMYAANHLKGVKAIVALTES---------GRTARLISRFRPGAPIFAVTRDE 406 (465)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCCH
Confidence 3445557788888 8888886553 788888888744 9999997553
No 129
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.31 E-value=26 Score=25.60 Aligned_cols=51 Identities=14% Similarity=0.154 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++.+-+++|+.++.|.|.|-+.|+-.-...++++.+.-+--+-|=-++.|-
T Consensus 454 vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vg 504 (587)
T KOG0781|consen 454 VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVG 504 (587)
T ss_pred HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEeh
Confidence 566677899999999999999999888888888887655444444455553
No 130
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=59.30 E-value=19 Score=24.75 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCC-ccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
-....+|++.|++.+..+|+..+.+...... -++......+...++ +||.+-=+.
T Consensus 26 ~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~VPValHLDH 82 (347)
T TIGR01521 26 MEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPHIPVVMHQDH 82 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 3578899999999999999999887543222 335667788888886 999876443
No 131
>PTZ00300 pyruvate kinase; Provisional
Probab=59.28 E-value=21 Score=25.46 Aligned_cols=44 Identities=25% Similarity=0.291 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
.+....+.|.+.++++||+=+.. |.++..+.+.=| ||++.+-+.
T Consensus 336 ia~sa~~~a~~l~a~aIiv~T~s---------G~tA~~vs~~RP~~pIia~t~~ 380 (454)
T PTZ00300 336 VCSSAVNSVYETKAKALVVLSNT---------GRSARLVAKYRPNCPIVCVTTR 380 (454)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 34456677888999999886663 888999998855 999999654
No 132
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=59.12 E-value=20 Score=23.92 Aligned_cols=55 Identities=9% Similarity=0.083 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCC-C-ceecCcHHHHHhhhC--CccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKV-K-RAFLGSVSDYCAHHA--VCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~-~~~~gs~~~~vi~~~--~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+.-+.+.... . -..+.........++ ++||.+-=+.
T Consensus 28 ~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (288)
T TIGR00167 28 LETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLDH 86 (288)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECCC
Confidence 36788999999999999999988765432 2 223566777888889 8999876443
No 133
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=58.99 E-value=42 Score=22.52 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=30.1
Q ss_pred hcCCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCCC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
..++|.+++|+..-......+ .|+-.-.++ +...+||+++-+..
T Consensus 195 ~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~ 241 (303)
T TIGR00524 195 KGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPLS 241 (303)
T ss_pred ccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEecccc
Confidence 347999999998755444333 566655555 66779999995543
No 134
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=58.89 E-value=13 Score=23.24 Aligned_cols=62 Identities=16% Similarity=0.253 Sum_probs=35.3
Q ss_pred cceEEEEEecC-CHHHHHHHHHHh-c--CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVEQ-M--HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~~-~--~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|+-+....+.| |..+.|.+..+. + ++++|++..-.-+++. ==..+++-+.+..||++|-...
T Consensus 36 Gv~~~~itvdG~DaT~~i~~m~~~~~r~~i~~v~LdGit~agFN----iiD~~~l~~~tg~PVI~V~~~~ 101 (187)
T PF01949_consen 36 GVAFGRITVDGMDATEAIIEMVKRLFRPDIRVVMLDGITFAGFN----IIDIERLYEETGLPVIVVMRKE 101 (187)
T ss_dssp EEEEEEE-TT-S-HHHHHHHHHCCTTTTTEEEEEESSSEETTTE----E--HHHHHHHH---EEEEESS-
T ss_pred EEEEEEEEECCchHHHHHHHHHHhcccCcceEEEECCEeEEeeE----EecHHHHHHHHCCCEEEEEEeC
Confidence 45555556667 789999998874 2 3566776554333321 1237899999999999996443
No 135
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=58.89 E-value=47 Score=22.79 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=30.1
Q ss_pred hcCCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCCC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
+.++|.+++|+..-......+ .|+-.-.++ ++..+|++|+-+..
T Consensus 223 ~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 223 TGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred ccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecccc
Confidence 347999999998754433333 566665555 66679999986554
No 136
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=58.74 E-value=31 Score=20.97 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCC--ceecCcHHHHHhhh---CCccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVK--RAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~--~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
..+.+.+.+.+.++|+|+++.---.... ...+.. ..+.+.. ..+|+.+++..
T Consensus 29 ~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~GN 85 (223)
T cd00840 29 AFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALEL-LIEALRRLKEAGIPVFIIAGN 85 (223)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHH-HHHHHHHHHHCCCCEEEecCC
Confidence 3578888899999998888654322211 111112 2333333 38999999754
No 137
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=58.40 E-value=17 Score=23.59 Aligned_cols=40 Identities=13% Similarity=0.267 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
...++.+..++.++|.|++|-.|.+.+ ++++-....+||+
T Consensus 162 l~~~~~~a~~edgAeaIiLGCAGms~l--------a~~Lq~~~gvPVI 201 (230)
T COG4126 162 LVIEAAEALKEDGAEAIILGCAGMSDL--------ADQLQKAFGVPVI 201 (230)
T ss_pred HHHHHHHHhhhcCCCEEEEcCccHHHH--------HHHHHHHhCCCcc
Confidence 345566778899999999999886544 5555556666663
No 138
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=58.36 E-value=43 Score=22.09 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.+..|...++..+.|||++|......- .|-+...+......|.+-.
T Consensus 99 ta~~Laa~~~~~~~~LVl~G~qa~D~~----t~qvg~~lAe~Lg~P~~t~ 144 (260)
T COG2086 99 TAKALAAAVKKIGPDLVLTGKQAIDGD----TGQVGPLLAELLGWPQVTY 144 (260)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCC----ccchHHHHHHHhCCceeee
Confidence 567788889999999999998865433 3566677777777776543
No 139
>PTZ00066 pyruvate kinase; Provisional
Probab=58.13 E-value=25 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.292 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+....+.|++.++.+||+=+.. |.++..+.+.=| ||++.+-+..
T Consensus 399 ia~aa~~~A~~l~a~aIv~~T~S---------G~TAr~iSk~RP~~pIia~t~~~ 444 (513)
T PTZ00066 399 VARSAVETAEDINAKLIIALTET---------GNTARLISKYRPSCTILALSASP 444 (513)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCCH
Confidence 55666778889999999987763 888999988855 9999997653
No 140
>PLN02461 Probable pyruvate kinase
Probab=58.08 E-value=44 Score=24.29 Aligned_cols=42 Identities=26% Similarity=0.384 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~ 65 (81)
.+....+.|.+.++.+|++=++. |.++..+.+.=| ||++.+-
T Consensus 383 ia~sav~~A~~l~a~aIiv~T~s---------G~tA~~iSk~RP~~pIia~t 425 (511)
T PLN02461 383 LASSAVRTANKVKASLIVVLTRG---------GTTARLVAKYRPAVPILSVV 425 (511)
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEe
Confidence 44555677889999999987663 888999998855 9999994
No 141
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=57.91 E-value=18 Score=24.10 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC-C-ceecCcHHHHHhhhC--CccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV-K-RAFLGSVSDYCAHHA--VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~-~-~~~~gs~~~~vi~~~--~~Pvlvv~~~ 67 (81)
+...++++.|++.+..+|+.-+.+.... . -..+......+..++ ++||.+-=+.
T Consensus 29 e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH 86 (293)
T PRK07315 29 EWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDH 86 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 5778999999999999999988765432 2 123456677888888 6798876443
No 142
>PRK10799 metal-binding protein; Provisional
Probab=57.88 E-value=16 Score=23.55 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=34.8
Q ss_pred EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCC--CCCceecCc--HHHHHhhhCCccEEEECCCC
Q 038513 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLG--KVKRAFLGS--VSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 7 ~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~--~~~~~~~gs--~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.....=++..++++.|.+.++|||+. .|+-- +....+.|. ...+.+-+..+.|+..+.+-
T Consensus 36 ~~I~~alD~t~~vi~~A~~~~~dlIit-HHP~~~~~~~~~~~~~~~~~~~~li~~~i~vy~~Htn~ 100 (247)
T PRK10799 36 QKIVTGVTASQALLDEAVRLQADAVIV-HHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPL 100 (247)
T ss_pred cEEEEEeCCCHHHHHHHHHCCCCEEEE-CCchhccCCCccccchHHHHHHHHHHCCCeEEEEecch
Confidence 333444588899999999999999995 23211 111222121 12223344568888776543
No 143
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=57.82 E-value=14 Score=25.43 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh----CCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH----AVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~----~~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+++++|++-+.--+.+. |...+.+++. ..+||+.++.+.
T Consensus 74 ~L~~aI~ei~~~~~P~~I~V~sTCv~e~I----GDDi~~v~~~~~~~~~~pvi~v~t~g 128 (396)
T cd01979 74 ELDRVVTQIKRDRNPSVIFLIGSCTTEVI----KMDLEGAAPRLSAEIGVPILVASASG 128 (396)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCHHHHH----hcCHHHHHHHHhhcCCCcEEEeeCCC
Confidence 47788888899899999999888765543 5555555544 469999997543
No 144
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=57.73 E-value=28 Score=18.48 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCC-CC-CceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLG-KV-KRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~-~~-~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...+.|.+..++++++.|.+|..+.- +. ...+.-...+.+-++.++||.+..+..
T Consensus 38 ~~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~nDa~ 94 (99)
T smart00732 38 ADAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVVLVDERL 94 (99)
T ss_pred hHHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEeCCc
Confidence 46788889999999999999977642 11 101112233445556789999987654
No 145
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=57.69 E-value=51 Score=21.82 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.+..+.+.+..+...+|-+++..+..+..... .-.+.+-+.++.|||+=
T Consensus 163 ~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~---~el~~a~~~~~~pvlvG 211 (263)
T COG0434 163 RSLEEAVKDTVERGLADAVIVTGSRTGSPPDL---EELKLAKEAVDTPVLVG 211 (263)
T ss_pred cCHHHHHHHHHHccCCCEEEEecccCCCCCCH---HHHHHHHhccCCCEEEe
Confidence 47788888889999999998876655433221 22345566677888874
No 146
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=57.68 E-value=43 Score=21.63 Aligned_cols=53 Identities=13% Similarity=0.069 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.-.+.+.+++.++|-+++..........--+-..-..|+..++.|+++...+.
T Consensus 81 ~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~ 133 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPG 133 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 34455788999999999977654333222233455678888899999986553
No 147
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=57.54 E-value=6.9 Score=22.05 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.+.....++|+|++|.+=+.. =.....+.....+||.++++.
T Consensus 42 ~~~~~~~~~~DvIll~PQi~~~------~~~i~~~~~~~~ipv~~I~~~ 84 (104)
T PRK09590 42 GEKAIAAAEYDLYLVSPQTKMY------FKQFEEAGAKVGKPVVQIPPQ 84 (104)
T ss_pred HHHhhccCCCCEEEEChHHHHH------HHHHHHHhhhcCCCEEEeCHH
Confidence 4444444467777777652211 133455666678999999854
No 148
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=57.51 E-value=25 Score=23.08 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+.+.+++.++|-+++-.........--+-..-..|...++.|+++...
T Consensus 85 ~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 85 AYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 3557899999999999665433222211223445788888999999863
No 149
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=57.01 E-value=29 Score=22.65 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.+.|++.++|-+++.........+--+-..-..|.+.++.|+++...+
T Consensus 85 ~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 5578899999999987654333222222234567788889999988655
No 150
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=56.84 E-value=43 Score=21.63 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=36.3
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHH
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYC 53 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~v 53 (81)
|+++-..+-.+.|.+.+..+.. .+|+|.+=+-..+.-.+.|+.++.++|
T Consensus 109 G~kaGv~lnP~Tp~~~i~~~l~--~vD~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 109 GVKAGLVLNPATPLEALEPVLD--DVDLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred CCeEEEEECCCCCHHHHHHHHh--hCCEEEEEeECCCCcccccCHHHHHHH
Confidence 4555566667888999998888 799988877777766677776666655
No 151
>PLN02765 pyruvate kinase
Probab=56.63 E-value=46 Score=24.28 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~ 65 (81)
.+....+.|+..++.+||+=+.. |.++..+.+.=| ||++.+-
T Consensus 396 ia~sav~~A~~l~a~aIvv~T~s---------G~tAr~isk~RP~~pIla~t 438 (526)
T PLN02765 396 IASSAVRAAIKVKASVIIVFTSS---------GRAARLIAKYRPTMPVLSVV 438 (526)
T ss_pred HHHHHHHHHhhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEe
Confidence 45556677888999999997663 889999998866 9999986
No 152
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=56.63 E-value=25 Score=24.46 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHhcCC-CEEEEcccCCCCCCceecCcHHHHHhh----hCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHI-DLLVVGSRGLGKVKRAFLGSVSDYCAH----HAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~-dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~~Pvlvv~~~~ 68 (81)
...+.|.+..+.++. ++|++-+.-.+.+ +|...+.+++ ...+||+.+..+.
T Consensus 85 kL~~~I~~~~~~~~p~~~I~V~tTC~~~i----IGdDi~~v~~~~~~~~~~pvi~v~t~g 140 (421)
T cd01976 85 KLAKAIDEAYELFPLNKGISVQSECPVGL----IGDDIEAVARKASKELGIPVVPVRCEG 140 (421)
T ss_pred HHHHHHHHHHHhCCCccEEEEECCChHHH----hccCHHHHHHHHHHhhCCCEEEEeCCC
Confidence 467888888888887 9888887765544 4555555555 4579999997544
No 153
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=56.35 E-value=23 Score=24.56 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=28.0
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhC---CccEEEECC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA---VCPILIVKP 66 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~---~~Pvlvv~~ 66 (81)
.++|||+.|--.-. .+.+.|.+...|.+.+ .+||+++-.
T Consensus 282 ~~ADlVITGEG~~D--~Qtl~GK~p~~Va~~A~~~~vPviai~G 323 (375)
T TIGR00045 282 KDADLVITGEGRLD--RQSLMGKAPVGVAKRAKKYGVPVIAIAG 323 (375)
T ss_pred cCCCEEEECCCccc--ccccCCchHHHHHHHHHHhCCeEEEEec
Confidence 47999999865433 2345688887777776 599999943
No 154
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=56.30 E-value=18 Score=24.68 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=25.3
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
.+|.+|+|+.. -||.+...+.+..+.|+++-....
T Consensus 3 ~~DVvIVGaGP--------AGs~aA~~la~~G~~VlvlEk~~~ 37 (396)
T COG0644 3 EYDVVIVGAGP--------AGSSAARRLAKAGLDVLVLEKGSE 37 (396)
T ss_pred eeeEEEECCch--------HHHHHHHHHHHcCCeEEEEecCCC
Confidence 57888888663 277787888888888888865443
No 155
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=56.29 E-value=28 Score=24.12 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCC-Cc----e-------e-----cCcHHHHHhhhCCccEEEECCCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKV-KR----A-------F-----LGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~~----~-------~-----~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
-.-..++++.|++.+..+|+..+.+.-.. .. . + +......+..++++||.+-=+..
T Consensus 37 ~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg 109 (357)
T TIGR01520 37 SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHC 109 (357)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 35678999999999999999998765321 11 1 1 45567888999999998875443
No 156
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=56.23 E-value=18 Score=25.01 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh----CCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH----AVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~----~~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+++++|.+-+.-.+.. +|...+.+++. ...||+.++.+.
T Consensus 71 ~L~~aI~~i~~~~~P~~I~V~tTC~se~----IGDDi~~v~~~~~~~~~~pVi~v~tpg 125 (407)
T TIGR01279 71 ELDRVVEQIKRDRNPSVIFLLSSCTPEV----IKMDLEGLAERLSTNFGVPVLFAPASG 125 (407)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCchHHH----HHhhHHHHHHHHHHhhCCCEEEeeCCC
Confidence 3478888889999999999998876654 35555555554 468999987654
No 157
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=56.02 E-value=21 Score=23.80 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCC-C-ceecCcHHHHHhhhCC--ccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKV-K-RAFLGSVSDYCAHHAV--CPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~-~-~~~~gs~~~~vi~~~~--~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+.-+.+.-.. . -..+......+.++++ +||.+-=+.
T Consensus 28 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDH 86 (286)
T PRK08610 28 LEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDH 86 (286)
T ss_pred HHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCC
Confidence 35778999999999999999988875433 2 1235667778888887 798876443
No 158
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=55.95 E-value=20 Score=22.99 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=20.4
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEE
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVV 33 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVm 33 (81)
++.....=++...+++.|.+.++|||+.
T Consensus 32 v~~V~~~ld~t~~vi~~A~~~~~dlIIt 59 (241)
T PF01784_consen 32 VKKVLVALDATPEVIEEAIEKGADLIIT 59 (241)
T ss_dssp ESEEEEESS-SHHHHHHHHHTT-SEEEE
T ss_pred cCEEEEEEeCCHHHHHHHHHcCCCEEEE
Confidence 4444555588899999999999999886
No 159
>COG1412 Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=55.53 E-value=42 Score=19.96 Aligned_cols=45 Identities=9% Similarity=0.150 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+.+.+.|.+.|.+++...++..-. ...+++ +...+||+.+++..
T Consensus 83 ~~~aDe~i~~~a~~~~~~iVaTnD~-----------eLk~rl-r~~GIPvi~lr~r~ 127 (136)
T COG1412 83 GRYADECLLEAALKHGRYIVATNDK-----------ELKRRL-RENGIPVITLRQRK 127 (136)
T ss_pred CCChHHHHHHHHHHcCCEEEEeCCH-----------HHHHHH-HHcCCCEEEEeCCe
Confidence 4578899999999888444443211 224444 44499999998654
No 160
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=55.45 E-value=29 Score=20.51 Aligned_cols=40 Identities=15% Similarity=0.375 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
|+..+...+....+ +|+||+=... -...+.+...+.+||+
T Consensus 81 ~Esl~Dtar~ls~~-~D~iv~R~~~---------~~~~~~~a~~~~vPVI 120 (142)
T PF02729_consen 81 GESLEDTARVLSRY-VDAIVIRHPS---------HGALEELAEHSSVPVI 120 (142)
T ss_dssp SSEHHHHHHHHHHH-CSEEEEEESS---------HHHHHHHHHHCSSEEE
T ss_pred CCCHHHHHHHHHHh-hheEEEEecc---------chHHHHHHHhccCCeE
Confidence 33344444444455 8888885332 2456788888888885
No 161
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=55.36 E-value=23 Score=24.97 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=48.4
Q ss_pred ceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCC--CceecCcHHHHHhhhC---CccEEEECCCC
Q 038513 4 VNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKV--KRAFLGSVSDYCAHHA---VCPILIVKPPK 68 (81)
Q Consensus 4 v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~--~~~~~gs~~~~vi~~~---~~Pvlvv~~~~ 68 (81)
++.+.........+++..++.+.++.-++||..=++.. -..++.+.+.++.++- ..|++++-.++
T Consensus 248 v~~~iIasn~~sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~asiarev~~~g~Pf~~P~~llsGGE 317 (422)
T COG2379 248 VENRIIASNRLSLEAAASEARALGFKAVILGDTIEGEAREVGRVHASIAREVARRGRPFKKPVVLLSGGE 317 (422)
T ss_pred ceeEEEechHHHHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEECCc
Confidence 33444444456788999999999999999999654433 3456789999998888 79999886543
No 162
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=55.27 E-value=58 Score=22.26 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=29.2
Q ss_pred hcCCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPP 67 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~ 67 (81)
+.++|.+++|+..-......+ .|+..-.++ +...+|++|+-+.
T Consensus 223 ~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~~ 268 (331)
T TIGR00512 223 HGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPT 268 (331)
T ss_pred ccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEeccc
Confidence 347999999998754333332 566665555 6667999998553
No 163
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=54.91 E-value=20 Score=25.68 Aligned_cols=50 Identities=14% Similarity=0.124 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC---CccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA---VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~---~~Pvlvv~~~ 67 (81)
...+.|.+..+++++++|++.+...+.+. |...+.+++.. .+||+.+.-+
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selI----GdDi~~~~~~~~~~~~pvi~v~t~ 124 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLL----QEDLGNLAAAAGLDKSKVIVADVN 124 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHh----ccCHHHHHHHhccCCCcEEEecCC
Confidence 47788888888899999999888765443 44455555433 5899999644
No 164
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=54.91 E-value=46 Score=20.86 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=23.8
Q ss_pred HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 23 VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....++|||+........ ...+.+...+..|++++...
T Consensus 70 i~~l~PDLIi~~~~~~~~-------~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 70 IAALKPDVVIDVGSDDPT-------SIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHhcCCCEEEEecCCccc-------hhHHHHHHhhCCCEEEEecC
Confidence 344589999986542211 23445555578899998754
No 165
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=54.85 E-value=31 Score=18.23 Aligned_cols=48 Identities=10% Similarity=0.117 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
.++..+..+.+.+|++++...-... .. -...+++-+.. .+|++++-..
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~-~~---~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDG-DG---LELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSS-BH---HHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHhcccCceEEEEEeeeccc-cc---cccccccccccccccEEEecCC
Confidence 4555566688899999999764431 11 24456665555 4888888644
No 166
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=54.80 E-value=48 Score=20.33 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=25.9
Q ss_pred hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..++|||+..... -.+....-+....+|++++....
T Consensus 58 ~l~PDlIi~~~~~--------~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 58 ALKPDLIIGSSFY--------GQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HT--SEEEEETTS--------SCHHHHHHHHHTTSEEEEESSTT
T ss_pred hCCCCEEEEeccc--------cchHHHHHHhcccceEEEeeccc
Confidence 3489999998775 24556677788899999998764
No 167
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=54.76 E-value=27 Score=24.52 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHhcCC-CEEEEcccCCCCCCceecCcHHHHHhh----hCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHI-DLLVVGSRGLGKVKRAFLGSVSDYCAH----HAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~-dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~~Pvlvv~~~~ 68 (81)
+..++|.+..+.++. ++|++-+.-.+.+ +|...+.+++ +.++||+.++.+.
T Consensus 104 ~L~~aI~~~~~~~~p~~~I~V~~tC~~~l----iGdDi~~v~~~~~~~~~~pvi~v~t~g 159 (443)
T TIGR01862 104 KLKKLIHEAFTEFPLIKAISVYATCPTGL----IGDDIEAVAKEVSKEIGKDVVAVNCPG 159 (443)
T ss_pred HHHHHHHHHHHhCCccceEEEECCChHHH----hccCHHHHHHHHHHhcCCCEEEEecCC
Confidence 478888899999988 8887766655443 3666666665 4568999997543
No 168
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=54.72 E-value=18 Score=21.80 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
..+.+.|++++++.|+.|.+...
T Consensus 89 ~~l~~~a~~~g~~~i~~Gh~~~D 111 (189)
T TIGR02432 89 DFFEEIAKKHGADYILTAHHADD 111 (189)
T ss_pred HHHHHHHHHcCCCEEEEcCccHH
Confidence 57788999999999999998654
No 169
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=54.28 E-value=15 Score=22.24 Aligned_cols=23 Identities=4% Similarity=0.068 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
+.+.+.|.+++++.|++|.+...
T Consensus 86 ~~l~~~a~~~g~~~i~~GHh~dD 108 (182)
T PF01171_consen 86 QFLREIAKEEGCNKIALGHHLDD 108 (182)
T ss_dssp HHHHHHHHTTT-CEEE---BHHH
T ss_pred HHHHHhhhcccccceeecCcCCc
Confidence 45678899999999999998544
No 170
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=54.27 E-value=51 Score=20.54 Aligned_cols=49 Identities=6% Similarity=0.026 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.+..++.++|.+++....+.+...-..-+...++.+.+++|++.--
T Consensus 149 ~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~G 197 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASG 197 (234)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEec
Confidence 4556666677899888765544433222223456777888899988753
No 171
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=54.27 E-value=19 Score=21.54 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
..+.++|+++++|.|+.|++...
T Consensus 86 ~~l~~~a~~~~~~~i~~Gh~~dD 108 (185)
T cd01992 86 DFFAEIAKEHGADVLLTAHHADD 108 (185)
T ss_pred HHHHHHHHHcCCCEEEEcCCcHH
Confidence 45778899999999999998554
No 172
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=54.19 E-value=19 Score=24.10 Aligned_cols=54 Identities=17% Similarity=0.146 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCc--eecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKR--AFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~--~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+...+|++.|++.+...|+=.+.|...... -.+-.....++.+.++||.+--+.
T Consensus 29 E~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lHlDH 84 (286)
T COG0191 29 ETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALHLDH 84 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 578899999999999999998887543332 222345678888999999887544
No 173
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=54.00 E-value=72 Score=22.12 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHhcCCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECC
Q 038513 23 VEQMHIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKP 66 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~ 66 (81)
..+..+|++++|+.+-......+ .|...-.++ ++..+|++|+-+
T Consensus 234 M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 234 MQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred hhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcc
Confidence 33457999999998754433333 566665555 666799999853
No 174
>PRK11914 diacylglycerol kinase; Reviewed
Probab=53.75 E-value=57 Score=21.41 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=32.9
Q ss_pred ceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCC
Q 038513 4 VNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 4 v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~ 70 (81)
.++....... .-++.+.+.+.+.++|+||+..- .+.+. .+...+ ...+.|+-++|.++.-
T Consensus 40 ~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG-DGTi~-----evv~~l-~~~~~~lgiiP~GT~N 100 (306)
T PRK11914 40 VDVVEIVGTDAHDARHLVAAALAKGTDALVVVGG-DGVIS-----NALQVL-AGTDIPLGIIPAGTGN 100 (306)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC-chHHH-----HHhHHh-ccCCCcEEEEeCCCcc
Confidence 3444333332 34556666666678897765433 22222 223333 3467899999977643
No 175
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=53.75 E-value=19 Score=24.70 Aligned_cols=56 Identities=13% Similarity=0.115 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccc-CCCCCCc----------------eecCcHHHHHhhhCCccEEEECCCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSR-GLGKVKR----------------AFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~-~~~~~~~----------------~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
-+...++++.|++.+..+|+.-+. +...... -.+......+..++.+||.+-=+..
T Consensus 23 ~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~ 95 (340)
T cd00453 23 TDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHC 95 (340)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 356788999999999999999887 3311111 2345567788889999998875443
No 176
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=53.62 E-value=26 Score=24.09 Aligned_cols=48 Identities=17% Similarity=0.166 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCC----------------CCCCceecCcHHHHHhhhCCccEEEE
Q 038513 17 DVICQAVEQMHIDLLVVGSRGL----------------GKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~----------------~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+.++|++.++|.|+.|.+.+ ...+.+|+.......+.+.-.|+.-+
T Consensus 103 ~~l~~~A~~~G~~~IATGHya~~~~~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ifPLg~~ 166 (360)
T PRK14665 103 PLLAKIADEMGIFYLATGHYVRKQWIDGNYYITPAEDVDKDQSFFLWGLRQEILQRMLLPMGGM 166 (360)
T ss_pred HHHHHHHHHcCCCEEEECCccceeccCCcEEEEeecCCCCCceEEecCCCHHHHhheeccCcCC
Confidence 4567889999999999997763 23344555666666666665555433
No 177
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=53.50 E-value=42 Score=23.25 Aligned_cols=50 Identities=16% Similarity=0.210 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHhc-CCCEEEEcccCCCCCCceecCcHHHHHhh----hCC-ccEEEECCC
Q 038513 14 DARDVICQAVEQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAH----HAV-CPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~-~Pvlvv~~~ 67 (81)
+..++|.+..+.+ ++++|++-+.-.+.+- |...+.+++ +.+ +||+.++.+
T Consensus 74 ~L~~aI~~~~~~~p~p~~i~V~~tc~~~li----GdDi~~v~~~~~~~~~~~~vi~v~tp 129 (415)
T cd01977 74 KLKKNIIEAFKEFPDIKRMTVYTTCTTALI----GDDIKAVAKEVMEELPDVDIFVCNAP 129 (415)
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCchhhh----cCCHHHHHHHHHHhcCCCeEEEEeCC
Confidence 4677888888877 6777777766555443 555555554 455 889988644
No 178
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=53.38 E-value=36 Score=23.52 Aligned_cols=50 Identities=16% Similarity=0.133 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh--CCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH--AVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~--~~~Pvlvv~~~ 67 (81)
...+.|.+..+.+++++|++-+..-+.+ +|...+.+++. .++||+.|..+
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseI----IGDDIeaVvkE~~~giPVI~V~t~ 113 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMI----IGEDLKEAVDEADVDAEVIAVEVH 113 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhh----ccCCHHHHHHHhCCCCCEEEEECC
Confidence 4678888889999999999887765544 46666666664 44899999753
No 179
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=53.22 E-value=37 Score=19.72 Aligned_cols=48 Identities=17% Similarity=0.267 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+++-++-+ .+++.||+|+...+. +-++.-+...+++-.|-|.+.|.+.
T Consensus 52 eEle~~le-e~~E~ivvGTG~~G~---l~l~~ea~e~~r~k~~~vi~~pT~E 99 (121)
T COG1504 52 EELEELLE-EGPEVIVVGTGQSGM---LELSEEAREFFRKKGCEVIELPTPE 99 (121)
T ss_pred HHHHHHHh-cCCcEEEEecCceeE---EEeCHHHHHHHHhcCCeEEEeCCHH
Confidence 44444433 599999999875432 3367789999999999999998764
No 180
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=53.19 E-value=18 Score=27.60 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
-|.+.|++.++++++|.|-|..--...+.. +-.+++.+=+....|||+=..
T Consensus 445 vp~~~Ile~a~~~~~D~IglSGLit~Sl~~--M~~v~~em~r~~~iPvliGGA 495 (842)
T COG1410 445 VPAEKILEAAEEEKADIIGLSGLITPSLDE--MKEVLEEMNRGGFIPVLIGGA 495 (842)
T ss_pred CcHHHHHHHHHHhccceeeecccccccHHH--HHHHHHHhhhcCccceeeccc
Confidence 589999999999999999876543322222 234555555555588888643
No 181
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=53.03 E-value=84 Score=22.65 Aligned_cols=49 Identities=8% Similarity=-0.035 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHh----cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQ----MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~----~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..+.+.+..++ .++|.|++--+.-++ .+..-.+++..++|||+...+.
T Consensus 49 ~~~~~i~~~~~~~~~~~~~dgvi~~m~TFs~------a~~~i~~~~~l~~PvL~~~~q~ 101 (484)
T cd03557 49 TTPDEILAVCREANADDNCAGVITWMHTFSP------AKMWIAGLTALQKPLLHLHTQF 101 (484)
T ss_pred CCHHHHHHHHHHccccCCccEEEEccCCCch------HHHHHHHHHHcCCCEEEEccCC
Confidence 344555566555 459999987664333 3455677899999999997664
No 182
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=52.99 E-value=30 Score=23.35 Aligned_cols=48 Identities=13% Similarity=0.158 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+..+.++..+ ++|+||+|-... |-...+++..+.+.+-+ .|++.|-+
T Consensus 171 ~a~peal~AI~--~AD~IIlGPgsp~TSI~P~LlVpgIreAL~~---a~vV~Vsp 220 (297)
T TIGR01819 171 SIAPKVLEAIR--KEDNILIGPSNPITSIGPILSLPGIREALRD---KKVVAVSP 220 (297)
T ss_pred CCCHHHHHHHH--hCCEEEECCCccHHHhhhhcCchhHHHHHHc---CCEEEEcc
Confidence 57778888888 699999998763 44556667777777755 78887754
No 183
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=52.79 E-value=45 Score=19.42 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.-.+.+...++++|.|+.+.- |..+-..++...+-|+..+..
T Consensus 54 G~~~a~~l~~~gvdvvi~~~i----------G~~a~~~l~~~GIkv~~~~~~ 95 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASNI----------GPNAYNALKAAGIKVYVAPGG 95 (121)
T ss_pred hHHHHHHHHHcCCCEEEECcc----------CHHHHHHHHHcCcEEEecCCC
Confidence 445889999999999999855 677788899999998888764
No 184
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=52.78 E-value=63 Score=21.14 Aligned_cols=51 Identities=14% Similarity=0.070 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPPK 68 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~~ 68 (81)
+..+.|++.++|-+++-........+--+-..-+.|...+ +.|+++...+.
T Consensus 87 ~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 3457889999999988665433222211234456778888 79999986553
No 185
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=52.64 E-value=11 Score=20.71 Aligned_cols=36 Identities=6% Similarity=0.024 Sum_probs=23.2
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
++|+|+++.+=... -...+.......+||.++++..
T Consensus 50 ~~Dvill~pqi~~~------~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 50 DADVVLLAPQVAYM------LPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred CCCEEEECchHHHH------HHHHHHHhhhcCCCEEEeChhh
Confidence 57888877663221 1334556777789999998653
No 186
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=52.53 E-value=54 Score=21.53 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+..+...+.++...+|-|++.....+.-.. -+...++-+.++.|||+=
T Consensus 159 ~~~~~~~~a~~~~~aDaviVtG~~TG~~~~---~~~l~~vr~~~~~PVlvG 206 (254)
T PF03437_consen 159 DLEEAAKDAVERGGADAVIVTGKATGEPPD---PEKLKRVREAVPVPVLVG 206 (254)
T ss_pred CHHHHHHHHHHhcCCCEEEECCcccCCCCC---HHHHHHHHhcCCCCEEEe
Confidence 455555556678889999887765433222 123446666677888864
No 187
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=52.46 E-value=42 Score=23.53 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCc----eecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKR----AFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~----~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|++--.+..+++++|+|.+-..+.++... --+-.+.+.|+..+++|+++.-
T Consensus 141 P~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~g 195 (389)
T TIGR00381 141 PAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGG 195 (389)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeC
Confidence 33444455578999999997766554311 0135778899999999999984
No 188
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=52.33 E-value=32 Score=24.02 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--------CccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--------VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--------~~Pvlvv~~~ 67 (81)
+..++|.+..+++++++|++-+..-+.+ +|...+.+++.. ..||+.+..+
T Consensus 72 ~L~~ai~~~~~~~~p~~I~v~ttC~~~i----iGdDi~~v~~~~~~~~~~~~~~~vi~v~tp 129 (435)
T cd01974 72 NLIDGLKNAYAVYKPDMIAVSTTCMAEV----IGDDLNAFIKNAKNKGSIPADFPVPFANTP 129 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHhh----hhccHHHHHHHHHHhccCCCCCeEEEecCC
Confidence 4788899999999999999988766554 466666666543 5889888743
No 189
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=52.12 E-value=15 Score=24.26 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
...+.+.+.+++.++|.++...+.--...... -...++.++.. .+|+|.+...
T Consensus 273 ~r~~~~~~~~~~~~~dgvi~~~~~~C~~~~~~-~~~l~~~~~~~~gIP~l~le~d 326 (349)
T PF06050_consen 273 RRIEYIDDLIEKYGADGVIFHGHKGCDPYSYD-QPLLKEALREFLGIPVLFLEGD 326 (349)
T ss_dssp CHHHHHHHHHHHTT-SEEEEEEETT-HHHHCC-HHHHHHHHHCCHT--EEEEEE-
T ss_pred hHHHHHHHHHHHhCCCEEEEhHhcCCCcHHHH-HHHHHHHHHHhcCCCeEeeccc
Confidence 45678899999999999999887543222222 23456777777 9999999744
No 190
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=52.11 E-value=44 Score=22.10 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~ 70 (81)
-.+++.++.+++++|++|=.+|.-. .-+..++-++.+.+.+|.+....+...
T Consensus 54 ~~e~l~~~l~e~~i~llIDATHPyA----a~iS~Na~~aake~gipy~r~eRP~~~ 105 (257)
T COG2099 54 GAEGLAAFLREEGIDLLIDATHPYA----ARISQNAARAAKETGIPYLRLERPPWA 105 (257)
T ss_pred CHHHHHHHHHHcCCCEEEECCChHH----HHHHHHHHHHHHHhCCcEEEEECCccc
Confidence 4688999999999999999888532 223567788889999999999765443
No 191
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=51.23 E-value=42 Score=18.69 Aligned_cols=61 Identities=8% Similarity=-0.008 Sum_probs=35.5
Q ss_pred cceEEEEEecCC-HHHHHHHHHHh-cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 3 QVNAQTLILDGD-ARDVICQAVEQ-MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 3 ~v~~~~~~~~g~-~~~~I~~~a~~-~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
|++++....... -...|.+..++ .++||+|--..+.......--|....+......+|++.
T Consensus 42 Gi~~~~v~~~~~~g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 42 GIPVRAVSKRHEDGEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred CCceEEEEecCCCCCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 455554433211 12557888888 89999988654433111122356667777777888765
No 192
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=51.22 E-value=8.7 Score=23.01 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=33.4
Q ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-++..|.|.+.=.+..+++++|.+++|---... .+-.-+.+.+ ....+-+.+..
T Consensus 67 D~vi~~~p~~~~~~~i~~~k~Div~lG~D~~~d-----~~~l~~~~~k-~G~~~~v~R~~ 120 (140)
T COG0615 67 DEVILGAPWDIKFEDIEEYKPDIVVLGDDQKFD-----EDDLKYELVK-RGLFVEVKRTE 120 (140)
T ss_pred heeeeCCccccChHHHHHhCCCEEEECCCCcCC-----hHHHHHHHHH-cCCeeEEEecc
Confidence 345667776665788889999999999764421 1222333333 56666666544
No 193
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=51.14 E-value=53 Score=21.46 Aligned_cols=50 Identities=18% Similarity=0.077 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...+.|++.++|-+++.........+--+-..-.+|+..++.|+++...+
T Consensus 87 ~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 87 ELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 34578899999999887654333222222244567888889999998654
No 194
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=51.08 E-value=51 Score=20.24 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=27.6
Q ss_pred EEEEEecC------CHHHHHHHHHHhcCCCEEEEcccCCCCCC
Q 038513 6 AQTLILDG------DARDVICQAVEQMHIDLLVVGSRGLGKVK 42 (81)
Q Consensus 6 ~~~~~~~g------~~~~~I~~~a~~~~~dliVmG~~~~~~~~ 42 (81)
.+..+..| .-...+...|++.++|+++-|.+......
T Consensus 82 ~ki~l~HGh~~~~~~~~~~l~~la~~~~~Dvli~GHTH~p~~~ 124 (172)
T COG0622 82 VKIFLTHGHLYFVKTDLSLLEYLAKELGADVLIFGHTHKPVAE 124 (172)
T ss_pred EEEEEECCCccccccCHHHHHHHHHhcCCCEEEECCCCcccEE
Confidence 34556677 34567778999999999999998766443
No 195
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=51.04 E-value=53 Score=21.64 Aligned_cols=52 Identities=10% Similarity=-0.051 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~~ 68 (81)
-++.+.|++.++|-+++..........--+-..-..|...+ +.|+++...+.
T Consensus 86 i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~ 138 (290)
T TIGR00683 86 VELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPF 138 (290)
T ss_pred HHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCcc
Confidence 34557899999999999765433222211223345666666 69999997653
No 196
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=51.00 E-value=52 Score=23.44 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCEEEEccc-CCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR-GLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~-~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+++|.+..++.++|-++|-+. |...-. |++-.+-+.++.+|+..+-
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrc----ga~m~keiE~~GIPvV~i~ 371 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRC----GATMVKEIERAGIPVVHIC 371 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhH----HHHHHHHHHHcCCCEEEEe
Confidence 6778999999999999999855 544332 6778889999999999884
No 197
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=50.90 E-value=38 Score=22.87 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh----hCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH----HAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~~Pvlvv~~~~ 68 (81)
+..+.|.+..++.++++|++-+.--+.+ +|...+.+++ ...+|++.+..+.
T Consensus 67 ~l~~~i~~~~~~~~p~~i~v~~tc~~~l----iGdDi~~v~~~~~~~~~~~vv~~~~~g 121 (399)
T cd00316 67 KLLEAIINELKRYKPKVIFVYTTCTTEL----IGDDIEAVAKEASKEIGIPVVPASTPG 121 (399)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCchhhh----hccCHHHHHHHHHHhhCCceEEeeCCC
Confidence 4677888888888999999887765544 4666666665 4679999997643
No 198
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=50.71 E-value=60 Score=20.27 Aligned_cols=51 Identities=12% Similarity=-0.001 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
.++|.+....+ ++.++|-+.+-.-..........-.....+.+.++.|+++
T Consensus 27 ~~dp~~~a~~~-~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ 77 (230)
T TIGR00007 27 GDDPVEAAKKW-EEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQV 77 (230)
T ss_pred cCCHHHHHHHH-HHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEE
Confidence 45787777777 7778888888544332212211114567788888899988
No 199
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=50.66 E-value=45 Score=22.35 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+.+.+.+++.++|.|| +|... ...++..+.....+|++.||...
T Consensus 66 ~v~~~~~~~~~~~~d~iIaiGGGs--------~~D~aK~~a~~~~~p~i~iPTT~ 112 (339)
T cd08173 66 EVEKVESSARDIGADFVIGVGGGR--------VIDVAKVAAYKLGIPFISVPTAA 112 (339)
T ss_pred HHHHHHHHhhhcCCCEEEEeCCch--------HHHHHHHHHHhcCCCEEEecCcc
Confidence 355666778888999888 55332 13344445455578999999653
No 200
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=50.55 E-value=23 Score=22.81 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=36.5
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccC-CCCCCceecCcHHH--HHhhhCCccEEEECCCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRG-LGKVKRAFLGSVSD--YCAHHAVCPILIVKPPK 68 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~-~~~~~~~~~gs~~~--~vi~~~~~Pvlvv~~~~ 68 (81)
++.....=++..++++.|.+.++|||+.=..- -+++.+...++... ..+.+..+.|+..+..-
T Consensus 36 v~~I~~alD~t~~vi~~Ai~~~~dlIitHHP~~f~~~~~~~~~~~~~~~~~li~~~I~vy~~Ht~l 101 (249)
T TIGR00486 36 VKKVVVAVDASESVADEAVRLGADLIITHHPLIWKPLKRLIRGIKPGRLKILLQNDISLYSAHTNL 101 (249)
T ss_pred cCEEEEEecCCHHHHHHHHHCCCCEEEEcCccccCCcccccCCCHHHHHHHHHHCCCeEEEeecch
Confidence 33344445788899999999999999973221 11222222233222 33444568888776543
No 201
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=50.31 E-value=31 Score=19.07 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC--ccEEEEC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV--CPILIVK 65 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~--~Pvlvv~ 65 (81)
.+.+.+.+.+.+.++|+|.+........ ..-.....+.+..+ +++++--
T Consensus 37 ~~~~~~~~~i~~~~pdiV~iS~~~~~~~---~~~~~~~~~~~~~p~~~~ivvGG 87 (125)
T cd02065 37 VPPEEIVEAAKEEDADVVGLSALSTTHM---EAMKLVIEALKELGIDIPVVVGG 87 (125)
T ss_pred CCHHHHHHHHHHcCCCEEEEecchHhHH---HHHHHHHHHHHhcCCCCeEEEeC
Confidence 5778888888899999999987654422 11234556667665 5555543
No 202
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.23 E-value=24 Score=21.33 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.-.+.|++.+++.++|+|++|-.. +.++.+ ..+..+..+.++.+-
T Consensus 88 ~~~~~i~~~I~~~~pdiv~vglG~--PkQE~~----~~~~~~~l~~~v~i~ 132 (172)
T PF03808_consen 88 EEEEAIINRINASGPDIVFVGLGA--PKQERW----IARHRQRLPAGVIIG 132 (172)
T ss_pred hhHHHHHHHHHHcCCCEEEEECCC--CHHHHH----HHHHHHHCCCCEEEE
Confidence 467889999999999999998653 233333 556777777775544
No 203
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=50.17 E-value=32 Score=23.69 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCC-ceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVK-RAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
-....++++.|++.+.-+|+.-+.+..... ..++........++++ +||-+-=+.
T Consensus 28 ~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDH 84 (347)
T PRK09196 28 LEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPHIPVVMHQDH 84 (347)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 357889999999999999999988754322 2345667777888886 998876443
No 204
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=49.97 E-value=36 Score=20.64 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCC-C---CceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGK-V---KRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~-~---~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.++.+....+++++++.++-++...... + ..-.+-...+.+++...-||||.=..
T Consensus 42 e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~ 100 (164)
T PF03162_consen 42 EPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNH 100 (164)
T ss_dssp S---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHHHHH-GGG-SEEEE-SS
T ss_pred CCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 3466677779999999999999876544 1 11112222345677788999998543
No 205
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=49.68 E-value=48 Score=23.23 Aligned_cols=45 Identities=9% Similarity=0.059 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
-.+++.+.+++++++||++|.........+ .--.+|.+...+-++
T Consensus 157 D~d~l~~~a~~~kPklIi~G~S~y~~~~d~---~~~reIad~vga~l~ 201 (399)
T PF00464_consen 157 DYDELEKLAKEHKPKLIICGASSYPRPIDF---KRFREIADEVGAYLM 201 (399)
T ss_dssp -HHHHHHHHHHH--SEEEEE-SSTSS---H---HHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHhhcCCCEEEECchhccCccCH---HHHHHHHHhcCcEEE
Confidence 578999999999999999999876544332 234567777664433
No 206
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=49.67 E-value=53 Score=19.31 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=26.0
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+++.++|+||++.-=.......- ...-..+...++|+++++..
T Consensus 17 ~~~~~~~~D~vv~~GDl~~~~~~~~--~~~~~~l~~~~~p~~~v~GN 61 (188)
T cd07392 17 IILKAEEADAVIVAGDITNFGGKEA--AVEINLLLAIGVPVLAVPGN 61 (188)
T ss_pred HHhhccCCCEEEECCCccCcCCHHH--HHHHHHHHhcCCCEEEEcCC
Confidence 4456678999998754221111000 00115667788999999754
No 207
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=49.56 E-value=20 Score=25.02 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
..++|++.|.+.++|+|+++.-
T Consensus 30 ~f~eil~~a~~~~vD~VLiaGD 51 (405)
T TIGR00583 30 TFEEVLQIAKEQDVDMILLGGD 51 (405)
T ss_pred HHHHHHHHHHHcCCCEEEECCc
Confidence 4588999999999999999864
No 208
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=49.27 E-value=36 Score=22.73 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC--CceecCcHHHHHhhhCC--ccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV--KRAFLGSVSDYCAHHAV--CPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~--~~~~~gs~~~~vi~~~~--~Pvlvv~~~ 67 (81)
+-..++++.|++.+..+|+..+.+.... .--.+......+.+++. +||.+-=+.
T Consensus 29 e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDH 86 (285)
T PRK07709 29 EWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDH 86 (285)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 5678999999999999999988765433 11234567888888876 788776443
No 209
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=49.26 E-value=49 Score=18.80 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..++.++.. ++|++.+|.+- ++. =...+++.....+||-+++.
T Consensus 39 ~~e~~~~~~--~~DvvLlGPQv-----~y~-~~~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 39 ETELSEYID--NADVVLLGPQV-----RYM-LKQLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred hhHHHHhhh--cCCEEEEChHH-----HHH-HHHHHHHhcccCCCeEEeCH
Confidence 334444444 79999998763 222 35567888888899999975
No 210
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=49.21 E-value=24 Score=18.71 Aligned_cols=31 Identities=13% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCcee
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAF 45 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~ 45 (81)
+.+.-++.|++.+-||+.+......+..+++
T Consensus 29 ~~~eAl~~A~~~~lDLV~v~~~~~PPVcKi~ 59 (76)
T PF05198_consen 29 SLREALRLAKEKGLDLVEVSPNADPPVCKIM 59 (76)
T ss_dssp EHHHHHHHHHHTT-EEEEEETTSSS-EEEEE
T ss_pred EHHHHHHHHHHcCCcEEEEcCCCCCCeEEEe
Confidence 4677788899999999999977666665544
No 211
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=49.21 E-value=49 Score=22.97 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh--------CCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH--------AVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~--------~~~Pvlvv~~~ 67 (81)
+..++|.+..+.+++++|++-+..-+.+ +|...+.+++. ..+||+.+..+
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~l----iGdDi~~v~~~~~~~~~~~~~~~vi~v~tp 125 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTET----IGDDVAGFIKEFRAEGPEPADFPVVYASTP 125 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhh----cCCCHHHHHHHHHhhccCCCCCeEEEeeCC
Confidence 4778888888889999999888766554 35555555553 57899998654
No 212
>PF09043 Lys-AminoMut_A: D-Lysine 5,6-aminomutase alpha subunit; InterPro: IPR015130 This domain is found in proteins involved in the 1,2 rearrangement of the terminal amino group of DL-lysine and of L-beta-lysine, using adenosylcobalamin (AdoCbl) and pyridoxal-5'-phosphate as cofactors. The structure is predominantly a PLP-binding TIM barrel domain, with several additional alpha-helices and beta-strands at the N and C termini. These helices and strands form an intertwined accessory clamp structure that wraps around the sides of the TIM barrel and extends up toward the Ado ligand of the Cbl cofactor, providing most of the interactions observed between the protein and the Ado ligand of the Cbl, suggesting that its role is mainly in stabilising AdoCbl in the precatalytic resting state. ; PDB: 3KP1_A 3KOW_A 3KOZ_A 3KOY_B 3KOX_A 3KP0_C 1XRS_A.
Probab=49.20 E-value=44 Score=24.00 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=26.0
Q ss_pred EEEEEecCCHHHHHHH--HHHhcCCCEEEEc-ccCCCCCCceecCcHHH
Q 038513 6 AQTLILDGDARDVICQ--AVEQMHIDLLVVG-SRGLGKVKRAFLGSVSD 51 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~--~a~~~~~dliVmG-~~~~~~~~~~~~gs~~~ 51 (81)
+.+++..|+..+-|.+ .|.++++|.|.+= +.|.|.+.-...|.+++
T Consensus 149 iy~iVAtG~iyeDi~qaraAA~~GAD~IaVIRttgQSllDyvp~GaT~e 197 (509)
T PF09043_consen 149 IYVIVATGNIYEDIRQARAAARQGADIIAVIRTTGQSLLDYVPEGATTE 197 (509)
T ss_dssp EEEEE-SS-HHHHHHHHHHHHHTT-SEEEE-BSTTGGG-SS-B-S--S-
T ss_pred EEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhccccCCCCCC
Confidence 3567788999999875 6889999998664 44556555555564443
No 213
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=49.01 E-value=82 Score=21.34 Aligned_cols=50 Identities=6% Similarity=0.058 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..+++..++.++|+|-+...........+.-..+..+-...++||+++-.
T Consensus 244 ~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 244 SYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred HHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCCEEEECC
Confidence 35677777778999988433221111223345566777778899998854
No 214
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=48.99 E-value=56 Score=21.58 Aligned_cols=55 Identities=18% Similarity=0.121 Sum_probs=37.7
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~~ 68 (81)
+..++ +.+.|++.++|-+++...-.....+--+-..-..|.+.+ +.|+++...+.
T Consensus 80 ~t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~ 137 (294)
T TIGR02313 80 NHDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPG 137 (294)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCch
Confidence 44444 557899999999999887544433222334556788888 79999986543
No 215
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=48.96 E-value=42 Score=20.92 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCC-ceecCcHHHHHhhh---CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVK-RAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
+.|++.+++.++|+|+...-=-.... ..- -....++++. .++|+.+++..
T Consensus 25 ~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~-~~~~~~~~~~l~~~~~p~~~~~GN 78 (214)
T cd07399 25 DWIVDNAEALNIAFVLHLGDIVDDGDNDAE-WEAADKAFARLDKAGIPYSVLAGN 78 (214)
T ss_pred HHHHHHHHHcCCCEEEECCCccCCCCCHHH-HHHHHHHHHHHHHcCCcEEEECCC
Confidence 55677777788999988654221111 000 0112233333 56999988754
No 216
>PRK10342 glycerate kinase I; Provisional
Probab=48.95 E-value=34 Score=23.85 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhC---CccEEEECC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA---VCPILIVKP 66 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~---~~Pvlvv~~ 66 (81)
.++|||+.|--.-. .+.+.|-+...|.+.+ .+||+++--
T Consensus 283 ~~ADLVITGEG~~D--~QTl~GK~p~gVa~~A~~~~vPviai~G 324 (381)
T PRK10342 283 HDCTLVITGEGRID--SQSIHGKVPIGVANVAKKYHKPVIGIAG 324 (381)
T ss_pred ccCCEEEECCCcCc--ccccCCccHHHHHHHHHHhCCCEEEEec
Confidence 47999999866433 2335677777766665 599999953
No 217
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=48.67 E-value=58 Score=21.75 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCEEEEcccCCCCC-CceecCcHHHHHhhhCCccEEEEC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKV-KRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~-~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.+.+.++|.|++-.+..++. ...-.-....++.+..++||+.--
T Consensus 121 ~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaG 168 (307)
T TIGR03151 121 LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAG 168 (307)
T ss_pred HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEEC
Confidence 34667777999999833321111 111112335566777789987763
No 218
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=48.41 E-value=82 Score=21.16 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=39.8
Q ss_pred ceEEEEEecC----CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCc-----HHHHHhhhCCccEEEECC
Q 038513 4 VNAQTLILDG----DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGS-----VSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 4 v~~~~~~~~g----~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs-----~~~~vi~~~~~Pvlvv~~ 66 (81)
+++...++.| +....+++.+++.++|.|.+..+... + .+.|. ...++-+..++||+..-.
T Consensus 134 ~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~--~-~y~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 134 LPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE--D-GYRAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred cceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc--c-CCCCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 5666666655 23567888889999999999654432 1 22232 356777778899887743
No 219
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=47.98 E-value=38 Score=22.42 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=28.2
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
|+.++.........+++.+++++.++..||+-..+.
T Consensus 33 gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~ 68 (273)
T PF12745_consen 33 GISADLMYDASPSQEELQSYCREDGISWIVIIKQKE 68 (273)
T ss_pred CCceEeccccCCCHHHHHHHHHHCCCCEEEEEeccc
Confidence 566666555555789999999999999999988743
No 220
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=47.93 E-value=71 Score=22.35 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.....+.++..++|.|++-...-+. ++..-..++..++|||+.-.+.
T Consensus 52 ~~~~~~~~~~~~~d~ii~~~~tf~~------~~~~~~~~~~~~~Pvll~a~~~ 98 (452)
T cd00578 52 ARKAAEEFNEANCDGLIVWMHTFGP------AKMWIAGLSELRKPVLLLATQF 98 (452)
T ss_pred HHHHHHHHhhcCCcEEEEccccccc------HHHHHHHHHhcCCCEEEEeCCC
Confidence 4456677777789999986543221 2334556678899999997554
No 221
>PRK07667 uridine kinase; Provisional
Probab=47.81 E-value=52 Score=20.10 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+.|.+...+++.+-+++|-.|.++..+.-+.......+.....|+.++...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3556677777777778888888887776544444445555566788888654
No 222
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=47.75 E-value=61 Score=20.90 Aligned_cols=50 Identities=14% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..++++.+.+.+.|.|++|.+..-.... +..+. ..+++...|+++.|...
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~~~--~~~~v-~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTYEK--TDTLI-EALRRYGLPIILFPSNP 65 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccHHH--HHHHH-HHHhccCCCEEEeCCCc
Confidence 4557777777899999999775222221 12223 33445669999988654
No 223
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=47.73 E-value=51 Score=19.73 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=16.6
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+++++++|..=.. ....+.|..+.+.+++......++
T Consensus 62 ~~~vi~~GG~~~~-~~~~~~G~~a~~~l~~~~~d~afi 98 (161)
T PF00455_consen 62 NIEVILLGGEVNP-KSLSFVGPIALEALRQFRFDKAFI 98 (161)
T ss_pred ceEEEEeCCEEEc-CCCcEECchHHHHHHhhccceEEe
Confidence 4555555544222 222333555555555555444444
No 224
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=47.69 E-value=29 Score=26.82 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh----hCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH----HAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+++++|.+-++--+.+ +|...+.+++ ...+||+.++.+.
T Consensus 99 kL~~aI~~~~~~~~P~~I~V~tTC~~el----IGDDi~~v~~~~~~~~~~pvi~v~tpG 153 (917)
T PRK14477 99 KLYRAILELAERYQPKAVFVYATCVTAL----TGDDVEAVCKAAAEKVGIPVIPVNTPG 153 (917)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHH----hccCHHHHHHHHHHhhCCcEEEEECCC
Confidence 4778999999999999999988876554 3555555554 4579999987653
No 225
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=47.66 E-value=34 Score=23.13 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC-CceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV-KRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
+-..++++.|++.+..+|+..+.+.... ..-++......+..+++ +||.+-=+.
T Consensus 28 e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDH 83 (307)
T PRK05835 28 EMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDH 83 (307)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCC
Confidence 5688999999999999999988765322 11224456777888886 999887443
No 226
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=47.62 E-value=19 Score=20.98 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=22.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+.+.++++++++|.|++.-..... +.+ ...-+.+++.+|.|-++|
T Consensus 130 ~~~l~~~~~~~~id~v~ial~~~~~--~~i--~~ii~~~~~~~v~v~~vP 175 (175)
T PF13727_consen 130 LDDLPELVREHDIDEVIIALPWSEE--EQI--KRIIEELENHGVRVRVVP 175 (175)
T ss_dssp GGGHHHHHHHHT--EEEE--TTS-H--HHH--HHHHHHHHTTT-EEEE--
T ss_pred HHHHHHHHHhCCCCEEEEEcCccCH--HHH--HHHHHHHHhCCCEEEEeC
Confidence 4667788888888888887543221 101 123345566667777765
No 227
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=47.60 E-value=49 Score=22.24 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.3
Q ss_pred cceEEEEEec-CCHHHHHHHHHHhcCCCEEEEcccC
Q 038513 3 QVNAQTLILD-GDARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 3 ~v~~~~~~~~-g~~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
++++...... .+-.+.|.++.+++++|.+|+-.|.
T Consensus 129 ~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 129 GIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred CCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCch
Confidence 3455555444 4667889999999999999997774
No 228
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=47.52 E-value=59 Score=20.92 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCc---eecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKR---AFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~---~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+.+++.+++.++|++|...-=-..... ..+ ....+.+...++|+++++..-
T Consensus 29 l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~-~~~~~~l~~l~~p~~~v~GNH 83 (267)
T cd07396 29 LEEAVEEWNRESLDFVVQLGDIIDGDNARAEEAL-DAVLAILDRLKGPVHHVLGNH 83 (267)
T ss_pred HHHHHHHHHcCCCCEEEECCCeecCCCchHHHHH-HHHHHHHHhcCCCEEEecCcc
Confidence 3555666666789998886543221110 111 123567778889999998543
No 229
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=47.12 E-value=35 Score=23.81 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-------CCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-------AVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-------~~~Pvlvv~~~~ 68 (81)
+..++|.+..+..++++|++-+..-+.+ +|...+.+++. ..+||+.+..+.
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~i----iGdDi~~v~~~~~~~~~~~~~~vi~v~t~g 128 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSET----IGEDVPRIIREFREEVDDSEPKIIPASTPG 128 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHH----hhcCHHHHHHHHhhcccCCCCcEEEEECCC
Confidence 4778888889998999999988766544 46666666654 467888886543
No 230
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=46.98 E-value=68 Score=19.85 Aligned_cols=53 Identities=8% Similarity=0.047 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhc--CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQM--HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~--~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+.+++.+++. ++|+|+++.-=-........ ....+++...++|++.++..-
T Consensus 26 ~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~-~~~~~~l~~~~~p~~~v~GNH 80 (240)
T cd07402 26 SLEAVLAHINALHPRPDLVLVTGDLTDDGSPESY-ERLRELLAALPIPVYLLPGNH 80 (240)
T ss_pred HHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHH-HHHHHHHhhcCCCEEEeCCCC
Confidence 346677777776 89988887542221110000 123456777799999997543
No 231
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=46.94 E-value=76 Score=20.38 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
....+.+..++.++|.|++-...+.+...-+.=+...++...+++||+..-
T Consensus 156 ~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~G 206 (254)
T TIGR00735 156 DAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASG 206 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 345666667788999877744433222221212456788888999999875
No 232
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=46.89 E-value=52 Score=22.10 Aligned_cols=34 Identities=15% Similarity=0.297 Sum_probs=25.7
Q ss_pred ceEEEEEe-cCCHHHHHHHHHHhcCCCEEEEcccC
Q 038513 4 VNAQTLIL-DGDARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 4 v~~~~~~~-~g~~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
+++..... +.+-.+.|.++.+++++|++|+-.|.
T Consensus 129 i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 129 VPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred CceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 44444443 44667889999999999999998775
No 233
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=46.80 E-value=60 Score=20.96 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...+.+..++.++|+||.-.. ..+-...+...+|++.+-..
T Consensus 83 ~~~~~~~l~~~~pDlVIsD~~-----------~~~~~aa~~~giP~i~i~~~ 123 (318)
T PF13528_consen 83 IRREIRWLREFRPDLVISDFY-----------PLAALAARRAGIPVIVISNQ 123 (318)
T ss_pred HHHHHHHHHhcCCCEEEEcCh-----------HHHHHHHHhcCCCEEEEEeh
Confidence 345566778889999998632 12446778889999988544
No 234
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=46.69 E-value=67 Score=22.40 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--------CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--------VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--------~~Pvlvv~~~~ 68 (81)
+..+.|.+..+.+++++|++-+...+.. +|...+.+++.. .+|++.++.+.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~V~ttc~~ei----IGdDi~~v~~~~~~~~p~~~~~~vi~v~t~g 126 (417)
T cd01966 68 NLEEALDTLAERAKPKVIGLLSTGLTET----RGEDIAGALKQFRAEHPELADVPVVYVSTPD 126 (417)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcccc----cccCHHHHHHHHHhhccccCCCeEEEecCCC
Confidence 4788888988889999999988866554 466666666543 68988887654
No 235
>PRK09932 glycerate kinase II; Provisional
Probab=46.64 E-value=39 Score=23.60 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=27.2
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhC---CccEEEECCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA---VCPILIVKPP 67 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~---~~Pvlvv~~~ 67 (81)
.++|||+.|--.-.. +.+.|-+...|.+.+ .+||+++-..
T Consensus 283 ~~ADlVITGEG~~D~--Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~ 325 (381)
T PRK09932 283 QGAALVITGEGRIDS--QTAGGKAPLGVASVAKQFNVPVIGIAGV 325 (381)
T ss_pred ccCCEEEECCCcccc--cccCCccHHHHHHHHHHcCCCEEEEecc
Confidence 479999998664332 345577766666655 5999999543
No 236
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=46.51 E-value=68 Score=21.01 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
..++.|++.+.+.+.+|.++|.. ||...+..+....|++-
T Consensus 122 ~lA~~i~~ai~~~~~~l~l~~~a----------gs~~~~~A~~~Gl~~~~ 161 (242)
T PF03746_consen 122 ELARAIAEAIKAFDPDLPLYGLA----------GSELEKAAKELGLPVVF 161 (242)
T ss_dssp HHHHHHHHHHHHH-TT-EEEEET----------TSHHHHHHHHCT--EEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEcC----------CcHHHHHHHHCCCcEEE
Confidence 46788999999999999999866 78888888888888764
No 237
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=46.46 E-value=79 Score=21.03 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+-++.+.|++.++|-|++-..-.....+--+=..-..|+..++.|+++..-+
T Consensus 88 ai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P 139 (299)
T COG0329 88 AIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIP 139 (299)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 4456689999999999998876654443333355678999999999998754
No 238
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=46.43 E-value=76 Score=22.74 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHh--cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 14 DARDVICQAVEQ--MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 14 ~~~~~I~~~a~~--~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
.....|++..++ .++|.+|+.-.+++.+.. -...-++.+...+|||+=|.+..
T Consensus 128 ~~~~~ll~~~~~~l~~~~~vVLSDY~KG~L~~---~q~~I~~ar~~~~pVLvDPKg~D 182 (467)
T COG2870 128 EDENKLLEKIKNALKSFDALVLSDYAKGVLTN---VQKMIDLAREAGIPVLVDPKGKD 182 (467)
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeccccccchh---HHHHHHHHHHcCCcEEECCCCcc
Confidence 334555555554 589999999999887764 24456788899999999887654
No 239
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=46.28 E-value=62 Score=21.35 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=35.3
Q ss_pred ccceEEEEEecCCHHHHHHH---HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 2 VQVNAQTLILDGDARDVICQ---AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 2 ~~v~~~~~~~~g~~~~~I~~---~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.|+++......||-.+.|.+ .+.+. +|+|+.... -++... .=+.+.+.+....|+.+-
T Consensus 33 ~G~~v~~~~~VgD~~~~I~~~l~~a~~r-~D~vI~tGG-LGPT~D---DiT~e~vAka~g~~lv~~ 93 (255)
T COG1058 33 LGVDLARITTVGDNPDRIVEALREASER-ADVVITTGG-LGPTHD---DLTAEAVAKALGRPLVLD 93 (255)
T ss_pred cCceEEEEEecCCCHHHHHHHHHHHHhC-CCEEEECCC-cCCCcc---HhHHHHHHHHhCCCcccC
Confidence 47788888888876555554 45555 999988533 333332 223455666666666554
No 240
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=46.19 E-value=89 Score=20.97 Aligned_cols=63 Identities=16% Similarity=0.024 Sum_probs=37.8
Q ss_pred ceEEEEEecCC-----HHHHHHHHHHhcCCCEEEEcccCCCCCC-ceecCcHHHHHhhhCCccEEEECC
Q 038513 4 VNAQTLILDGD-----ARDVICQAVEQMHIDLLVVGSRGLGKVK-RAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 4 v~~~~~~~~g~-----~~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++...++.|- ....+.+.+++.++|.|.+-.+...... ...--....++.+..++||+..-.
T Consensus 134 ~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 134 VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC
Confidence 45555565551 3456777788889999987654332211 111123456677778899887743
No 241
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=46.14 E-value=78 Score=20.24 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...+.+.+.+.++|-|++....+.+..+.+-=....++.+.+++|++.--
T Consensus 155 ~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~G 204 (253)
T PRK02083 155 AVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASG 204 (253)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEEC
Confidence 34566666777999877755443322222222345777788889988774
No 242
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=45.99 E-value=28 Score=20.56 Aligned_cols=62 Identities=16% Similarity=0.305 Sum_probs=29.6
Q ss_pred cceEEEEEecCC-----HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDGD-----ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g~-----~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|+.+...+..|+ ..+.+.-++++.+...|++=-.+-..-++++ ....+..++ .||++++.+.
T Consensus 25 g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~--~~~~~a~~~--KPVv~lk~Gr 91 (138)
T PF13607_consen 25 GIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFL--EAARRAARR--KPVVVLKAGR 91 (138)
T ss_dssp T-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHH--HHHHHHCCC--S-EEEEE---
T ss_pred CCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHH--HHHHHHhcC--CCEEEEeCCC
Confidence 456666666663 4555666667677888887666544433322 333333333 9999998765
No 243
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=45.95 E-value=26 Score=20.38 Aligned_cols=49 Identities=16% Similarity=0.056 Sum_probs=32.5
Q ss_pred HHHHHHHHHH--hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVE--QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~--~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+.+.++.+ ++.--+.=+-..|...|... ++-.++.+..+..+|+|.-
T Consensus 57 vp~~v~~FL~~~~N~~~l~GVigSGNrNfg~~-f~~aa~~ia~ky~VPll~k 107 (122)
T PF07972_consen 57 VPKQVIRFLENPDNRKLLRGVIGSGNRNFGDN-FCLAADKIAEKYGVPLLYK 107 (122)
T ss_dssp S-HHHHHHHHSHHHGGGEEEEEEEE-GGGGGG-TTHHHHHHHHHHT--EEEE
T ss_pred CCHHHHHHHHHHHHHhhheeEEecCCcHHHHH-HHHHHHHHHHHcCCCEEEE
Confidence 6677788777 55555554445555556555 6899999999999999864
No 244
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=45.79 E-value=62 Score=19.53 Aligned_cols=50 Identities=10% Similarity=-0.031 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
-...+.+.+-..+++.+|+..-.-+..++-. ....++.-+...|||++++
T Consensus 15 rv~e~ariaygfg~k~lV~tka~g~AAQsGI--p~~~kla~k~G~~vlvf~d 64 (147)
T COG4080 15 RVLEFARIAYGFGAKRLVLTKAKGSAAQSGI--PEVLKLAFKLGKPVLVFPD 64 (147)
T ss_pred HHHHHHHHHcccCccEEEEEecccHhhhhcc--HHHHHHHHHhCCcEEEehh
Confidence 4566777888889999999776554444322 3456888889999999975
No 245
>PRK04148 hypothetical protein; Provisional
Probab=45.61 E-value=64 Score=19.10 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=15.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
+....|++.|++.++||++.--.+..
T Consensus 89 el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 89 DLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 34455666666666666666555444
No 246
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=45.61 E-value=39 Score=22.65 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=34.9
Q ss_pred cceEEEEEecC----CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 3 QVNAQTLILDG----DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 3 ~v~~~~~~~~g----~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
|+++...-... ...+.+++..+++++||+|+...- -=.+..+.++-+..++=+..
T Consensus 138 ~IPfhhip~~~~~k~e~E~~~~~ll~~~~~DlvVLARYM---------qILS~d~~~~~~g~iINIHH 196 (287)
T COG0788 138 DIPFHHIPVTKENKAEAEARLLELLEEYGADLVVLARYM---------QILSPDFVERFPGKIINIHH 196 (287)
T ss_pred CCCeeeccCCCCcchHHHHHHHHHHHHhCCCEEeehhhH---------hhCCHHHHHhccCcEEEecc
Confidence 44554444332 345678899999999999998652 12245666666666665553
No 247
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.60 E-value=63 Score=21.52 Aligned_cols=52 Identities=13% Similarity=-0.011 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~~ 68 (81)
-...+.|++.++|-+++-.........--+=..-+.|...+ +.|+++...+.
T Consensus 93 i~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~ 145 (309)
T cd00952 93 IARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPE 145 (309)
T ss_pred HHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCch
Confidence 34557899999998888765432222111223346788888 59999996553
No 248
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=45.57 E-value=31 Score=23.52 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc----eecCcHHHHHhhhC--CccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR----AFLGSVSDYCAHHA--VCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~----~~~gs~~~~vi~~~--~~Pvlvv~~~ 67 (81)
-+...++++.|++.+..+|+..+.+...... ..+........+++ ++||.+-=+.
T Consensus 34 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDH 94 (321)
T PRK07084 34 MEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIVLHLDH 94 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCC
Confidence 3678899999999999999999876532222 11233335556666 6898876443
No 249
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=45.53 E-value=61 Score=18.89 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~~~~Pvlvv 64 (81)
-..+..+.+.+.++|++..+....+.......+ .....+.+...+|+++-
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQ 63 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEE
Confidence 345566666677899999998876655543333 34667777777886664
No 250
>PRK10481 hypothetical protein; Provisional
Probab=45.53 E-value=61 Score=20.88 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHHHHHH---hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVE---QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+.+.+.++ +.++|+||++-.|.+. .....+-+...+||+..
T Consensus 167 ~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-------~~~~~le~~lg~PVI~~ 212 (224)
T PRK10481 167 SEEELIDAGKELLDQGADVIVLDCLGYHQ-------RHRDLLQKALDVPVLLS 212 (224)
T ss_pred CHHHHHHHHHHhhcCCCCEEEEeCCCcCH-------HHHHHHHHHHCcCEEcH
Confidence 3446666666 6789999999887653 23667778888998864
No 251
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=45.44 E-value=48 Score=22.77 Aligned_cols=49 Identities=4% Similarity=-0.038 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+.|.+.+++.++|=+|.-...--....+-. ....+.++...+|+|.+
T Consensus 309 R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~-~~lk~~l~e~GIP~L~i 357 (380)
T TIGR02263 309 KGKYLLDQVRKNAAEGVIFAAPSFCDPALLER-PMLAARCKEHGIPQIAF 357 (380)
T ss_pred HHHHHHHHHHHhCCCEEEEhHhhcCChhhhhH-HHHHHHHHHCCCCEEEE
Confidence 56789999999999999988775443333221 22346668899999999
No 252
>PLN02257 phosphoribosylamine--glycine ligase
Probab=45.31 E-value=29 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEccc
Q 038513 14 DARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
+-.+.|.++|+++++|++|.|..
T Consensus 49 ~d~~~l~~~a~~~~id~vvvg~E 71 (434)
T PLN02257 49 SDSAAVISFCRKWGVGLVVVGPE 71 (434)
T ss_pred CCHHHHHHHHHHcCCCEEEECCc
Confidence 45678999999999999998863
No 253
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=45.26 E-value=53 Score=21.75 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..+.+++.++|-+++-..-......--+-..-..|.+.++.|+++...
T Consensus 93 ~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 93 YAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 447888999999988665433222222234456788889999999874
No 254
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=45.19 E-value=52 Score=21.65 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++.+.|++.++|-+++-........+--+-..-..|+..++.|+++..
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 356788999999998865533222221122345667888899999986
No 255
>PRK05406 LamB/YcsF family protein; Provisional
Probab=45.18 E-value=64 Score=21.21 Aligned_cols=40 Identities=25% Similarity=0.214 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
..++.|.+.+++.+.+|++++.. ||..++..+....|++-
T Consensus 124 ~~a~av~~ai~~~~~~l~l~~~~----------~s~~~~~A~~~Gl~~~~ 163 (246)
T PRK05406 124 ALADAVAEAVAAVDPSLILVGLA----------GSELIRAAEEAGLRTAS 163 (246)
T ss_pred HHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEEE
Confidence 46788999999999999999855 67788888888888774
No 256
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=45.01 E-value=48 Score=23.53 Aligned_cols=55 Identities=11% Similarity=0.051 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHhcCC-CEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHI-DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~-dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...++|.+..+.++. ++|.+-++-.+.+-.-=+.++...+-....+||+.+..+.
T Consensus 118 kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDDi~av~~~~~~~~~~pVi~v~t~g 173 (466)
T TIGR01282 118 KLKKAIDEIEELFPLNKGISIQSECPVGLIGDDIEAVAKKASKELGKPVVPVRCEG 173 (466)
T ss_pred HHHHHHHHHHHhCCcccEEEEeCCChHHHhccCHHHHHHHHhhhcCCcEEEEeCCC
Confidence 477888888888887 8888887765544322233333333334468999887554
No 257
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=44.78 E-value=7.4 Score=25.85 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCC-ceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVK-RAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~-~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+...++++.|++.+..+|+.-+.+..... --.+......+.+++++||.+-
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 56789999999999999999887654333 2245678899999999999775
No 258
>PRK13054 lipid kinase; Reviewed
Probab=44.44 E-value=90 Score=20.48 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=32.9
Q ss_pred cceEEEEEec--CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCCCCC
Q 038513 3 QVNAQTLILD--GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPPKEH 70 (81)
Q Consensus 3 ~v~~~~~~~~--g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~~~~ 70 (81)
+++++..... |+ +..+.+.+...++|.||+... .+.+ ..+...++.. ..+|+-++|.++.-
T Consensus 31 g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv~GG-DGTl-----~evv~~l~~~~~~~~~~lgiiP~GTgN 96 (300)
T PRK13054 31 GHTLHVRVTWEKGD-AARYVEEALALGVATVIAGGG-DGTI-----NEVATALAQLEGDARPALGILPLGTAN 96 (300)
T ss_pred CCEEEEEEecCCCc-HHHHHHHHHHcCCCEEEEECC-ccHH-----HHHHHHHHhhccCCCCcEEEEeCCcHh
Confidence 3444443332 44 455565555567887775543 2222 2334455432 35799999977643
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.25 E-value=42 Score=23.91 Aligned_cols=50 Identities=8% Similarity=0.067 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCc-cEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVC-PILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~-Pvlvv~~ 66 (81)
.+.|..+.++.++|+|++-+.|++......+.... +++.. .+. .+||+..
T Consensus 309 ~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~-~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 309 TRALTYFKEEARVDYILIDTAGKNYRASETVEEMI-ETMGQVEPDYICLTLSA 360 (436)
T ss_pred HHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHH-HHHhhcCCCeEEEEECC
Confidence 33343333344799999999999876554444443 33332 222 3566553
No 260
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=44.24 E-value=29 Score=23.99 Aligned_cols=33 Identities=12% Similarity=0.316 Sum_probs=27.0
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccC
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.....+..|++.+.|.+++++.+++.|+.-..-
T Consensus 74 g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~ 106 (429)
T TIGR02765 74 GSDLLVRSGKPEDVLPELIKELGVRTVFLHQEV 106 (429)
T ss_pred CCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccC
Confidence 344567789999999999999999999987553
No 261
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=44.23 E-value=73 Score=21.85 Aligned_cols=53 Identities=6% Similarity=-0.064 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCc-HHHHHhhhCCccEEEECCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGS-VSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs-~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
-.+.|.+.+++.++|=||.-...--.... +.+ ...+-++...+|+|.+-....
T Consensus 301 R~~~i~~lv~~~~~DGVI~~~~kfC~~~~--~e~~~lk~~l~e~GIP~L~iE~D~~ 354 (377)
T TIGR03190 301 RYDHVLGLAKEYNVQGAIFLQQKFCDPHE--GDYPDLKRHLEANGIPTLFLEFDIT 354 (377)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCCcch--hhhHHHHHHHHHCCCCEEEEecCCC
Confidence 56788999999999999987765433322 233 234556888999999975543
No 262
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=44.06 E-value=46 Score=22.05 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
....+.+..+++++|+||+....
T Consensus 153 ~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK06027 153 AEARLLELIDEYQPDLVVLARYM 175 (286)
T ss_pred hHHHHHHHHHHhCCCEEEEecch
Confidence 44567787888888888887653
No 263
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=44.05 E-value=77 Score=22.24 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--------CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--------VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--------~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+++++|++-+..-+.+ +|...+.+++.. .+|++.++.+.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~ei----IGDDi~~v~~~~~~e~p~~~~~pvi~v~tpg 136 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTET----RGEDIARVVRQFREKHPQHKGTAVVTVNTPD 136 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccc----cccCHHHHHHHHHhhcccccCCeEEEecCCC
Confidence 4788899999999999999988876554 466666666543 68988887553
No 264
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=44.04 E-value=54 Score=21.93 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
++|.+++|+..-......+ .|+..-.++ ++..+||+|+-+..
T Consensus 183 ~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~ 227 (301)
T TIGR00511 183 EVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETY 227 (301)
T ss_pred hCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEcccc
Confidence 5999999999754433333 466554444 56679999995543
No 265
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=43.82 E-value=31 Score=24.08 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEccc
Q 038513 14 DARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
.-.+.|+++|+++++|+++.|..
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E 77 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPE 77 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCc
Confidence 45678899999999999999764
No 266
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=43.35 E-value=87 Score=20.00 Aligned_cols=50 Identities=6% Similarity=-0.096 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...+.+..++.+++.|++-...+.+...-.--+...++.+.+++||+.--
T Consensus 148 ~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasG 197 (241)
T PRK14024 148 LWEVLERLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASG 197 (241)
T ss_pred HHHHHHHHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeC
Confidence 34556666778888777666655433332223445778888899988753
No 267
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=43.15 E-value=80 Score=22.54 Aligned_cols=49 Identities=14% Similarity=0.107 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEccc-CCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSR-GLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~-~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..+.+|.+..++.++|-++|-+. |...-. |++--+-+.++.+||..+-.
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~----~a~m~keiE~~GiPvv~~~~ 372 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRC----GATMVKEIERAGIPVVHMCT 372 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhH----HHHHHHHHHHcCCCEEEEee
Confidence 46788999999999999999854 544332 67778889999999998843
No 268
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=43.11 E-value=38 Score=23.55 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=24.5
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhC---CccEEEECCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA---VCPILIVKPP 67 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~---~~Pvlvv~~~ 67 (81)
.++||||.|--.-. . +.+.|.+...|.+.+ .+||+++-..
T Consensus 283 ~~aDlVITGEG~~D-~-Qtl~GK~p~~Va~~A~~~~vPviav~G~ 325 (377)
T PF02595_consen 283 EDADLVITGEGRLD-A-QTLAGKVPGGVARLAKKHGVPVIAVAGS 325 (377)
T ss_dssp CC-SEEEE--CECS-T-TTTTTCHHHHHHCCHCCTT--EEEEECE
T ss_pred cCCCEEEECccccc-c-ccCCCcHHHHHHHHHHHcCCcEEEEeCC
Confidence 37999999865432 2 345699998888755 4999999543
No 269
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.01 E-value=84 Score=19.76 Aligned_cols=52 Identities=12% Similarity=-0.022 Sum_probs=34.5
Q ss_pred ecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 11 LDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 11 ~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
..++|.+.+..+. +.++|.+.+-......-...-......++.+..++|+.+
T Consensus 30 ~~~~~~e~a~~~~-~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v 81 (241)
T PRK13585 30 SYGDPVEVAKRWV-DAGAETLHLVDLDGAFEGERKNAEAIEKIIEAVGVPVQL 81 (241)
T ss_pred ECCCHHHHHHHHH-HcCCCEEEEEechhhhcCCcccHHHHHHHHHHcCCcEEE
Confidence 3557776666654 478999877666543323223345677888998999988
No 270
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=42.98 E-value=33 Score=21.31 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCc
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKR 43 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~ 43 (81)
.-|.+.+.+.++++++|+|.++.........
T Consensus 121 ~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~ 151 (197)
T TIGR02370 121 DVPIDTVVEKVKKEKPLMLTGSALMTTTMYG 151 (197)
T ss_pred CCCHHHHHHHHHHcCCCEEEEccccccCHHH
Confidence 3689999999999999999999875554443
No 271
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=42.85 E-value=91 Score=20.10 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=28.2
Q ss_pred CHHHHH---HHHHHhcCCCEEEEcccCCCCCCc---eecCcHHHHHhhhCC-ccEEEE
Q 038513 14 DARDVI---CQAVEQMHIDLLVVGSRGLGKVKR---AFLGSVSDYCAHHAV-CPILIV 64 (81)
Q Consensus 14 ~~~~~I---~~~a~~~~~dliVmG~~~~~~~~~---~~~gs~~~~vi~~~~-~Pvlvv 64 (81)
++.+++ ++..++.++|+||+=+|....... ......+.++++..+ +++++-
T Consensus 167 d~~~~~~~~v~~lr~~~~D~IIvl~H~g~~~~~~~~~~~~~~~~~la~~~~~vD~Ilg 224 (277)
T cd07410 167 DPVETAKKYVPKLRAEGADVVVVLAHGGFERDLEESLTGENAAYELAEEVPGIDAILT 224 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecCCcCCCcccccCCccHHHHHHhcCCCCcEEEe
Confidence 444444 444555589999998885332211 122344567777754 555443
No 272
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=42.81 E-value=49 Score=21.90 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
-...|++.|..++.+-||+|+-|=+.+
T Consensus 193 rm~~vL~ia~~~g~~~LVLGA~GCG~f 219 (266)
T TIGR02452 193 RMYKVLNIAEDQNIDALVLGAWGCGVF 219 (266)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccccc
Confidence 345688999999999999999987643
No 273
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=42.76 E-value=58 Score=17.87 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=21.7
Q ss_pred EEEEecC-CHHHHHHHHHHhcCCCEEEEccc
Q 038513 7 QTLILDG-DARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 7 ~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
++..... ...+.+.+.+++.++|+|.++..
T Consensus 30 ~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 30 EVDILDANVPPEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp EEEEEESSB-HHHHHHHHHHTTCSEEEEEES
T ss_pred eEEEECCCCCHHHHHHHHhcCCCcEEEEEcc
Confidence 3444433 34588999999999999999874
No 274
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.73 E-value=66 Score=21.64 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+.+.+.+++.++|.|| +|...- -.++..+.....+|++.||..
T Consensus 67 v~~~~~~~~~~~~d~iiavGGGs~--------~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 67 VERLKKNPAVQEADMIFAVGGGKA--------IDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred HHHHHHHHhhcCCCEEEEeCCcHH--------HHHHHHHHHHcCCCEEEecCc
Confidence 44566778888999998 553221 122334444447899999964
No 275
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=42.58 E-value=82 Score=19.50 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCC-EEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHID-LLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~d-liVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.+.+.+++...+ .+++|+. +. |-.+..+..+.++|.+++.+.
T Consensus 47 ~~l~~~i~~~~~~~~~liGSS----lG----G~~A~~La~~~~~~avLiNPa 90 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSS----LG----GFYATYLAERYGLPAVLINPA 90 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEC----hH----HHHHHHHHHHhCCCEEEEcCC
Confidence 4455666665554 8888876 22 344677888888888888653
No 276
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.58 E-value=33 Score=23.99 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=27.1
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEccc
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
.....+..|++.+.|.+++++++++.|+.-..
T Consensus 91 g~~L~v~~g~~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 91 IIPFHLLDGPPKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred CCceEEeecChHHHHHHHHHHcCCCEEEEecc
Confidence 44556778999999999999999999998764
No 277
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=42.58 E-value=59 Score=17.87 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
...|.+..++.++|++|--..+... .--|....+..-...+|++.
T Consensus 56 ~~~i~~~i~~~~id~vIn~~~~~~~---~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 RPNIVDLIKNGEIQLVINTPSGKRA---IRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred chhHHHHHHcCCeEEEEECCCCCcc---CccHHHHHHHHHHhCCCEEe
Confidence 3668888889999999987543321 11244455666666788763
No 278
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=42.49 E-value=61 Score=21.93 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+.+.+.+++.++|+|| +|... .+.++..+...-.+|++.||...
T Consensus 76 v~~~~~~~~~~~~d~IIaiGGGs--------v~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 76 VEKVEEKAKDVNAGFLIGVGGGK--------VIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred HHHHHHHhhccCCCEEEEeCCch--------HHHHHHHHHHhcCCCEEEeCCCc
Confidence 45677777788899888 54321 23344444445578999998653
No 279
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=42.43 E-value=37 Score=20.86 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.+.|++.+++.++|+|++|-.. +-++.++ .+.....+.++++-
T Consensus 89 ~~~i~~~I~~s~~dil~VglG~--PkQE~~~----~~~~~~~~~~v~~g 131 (177)
T TIGR00696 89 RKAALAKIARSGAGIVFVGLGC--PKQEIWM----RNHRHLKPDAVMIG 131 (177)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC--cHhHHHH----HHhHHhCCCcEEEE
Confidence 4678899999999999998542 3334332 34445556666553
No 280
>PLN02858 fructose-bisphosphate aldolase
Probab=42.41 E-value=39 Score=27.48 Aligned_cols=54 Identities=19% Similarity=0.072 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+-..++++.|++.+..+|+.-+.+.-.....-+........+++++||.+-=+.
T Consensus 1125 e~~~avi~aAe~~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHLDH 1178 (1378)
T PLN02858 1125 EGIEAVVAAAEAEKSPAILQVHPGALKQGGIPLVSCCIAAAEQASVPITVHFDH 1178 (1378)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccHHhhcCHHHHHHHHHHHHHCCCCEEEECCC
Confidence 567899999999999999998876543222225566778899999999887443
No 281
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=42.40 E-value=33 Score=24.27 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=27.0
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccC
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.+...+..|++.+.+.+++++.+++.|+.-..-
T Consensus 68 G~~L~v~~G~p~~vl~~l~~~~~~~~V~~~~~~ 100 (471)
T TIGR03556 68 GSQLLILQGDPVQLIPQLAQQLGAKAVYWNLDV 100 (471)
T ss_pred CCCeEEEECCHHHHHHHHHHHcCCCEEEEeccc
Confidence 345567789999999999999999999976553
No 282
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=42.24 E-value=79 Score=19.20 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=24.0
Q ss_pred EEEEecCCH------HHHHHHHHHhcCCCEEEEcccCCCC
Q 038513 7 QTLILDGDA------RDVICQAVEQMHIDLLVVGSRGLGK 40 (81)
Q Consensus 7 ~~~~~~g~~------~~~I~~~a~~~~~dliVmG~~~~~~ 40 (81)
+..+..|.+ .+.+...+++.++|+++.|......
T Consensus 80 ~i~l~HG~~~~~~~~~~~~~~~~~~~~~dvii~GHTH~p~ 119 (178)
T cd07394 80 KIGLIHGHQVVPWGDPDSLAALQRQLDVDILISGHTHKFE 119 (178)
T ss_pred EEEEEECCcCCCCCCHHHHHHHHHhcCCCEEEECCCCcce
Confidence 344556643 4567777888899999999886543
No 283
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=42.06 E-value=72 Score=20.98 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=28.8
Q ss_pred CCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
++|.+++|+..-..-...+ .|+-.-.++ +...+||+++-...
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~ 195 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISM 195 (253)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeecc
Confidence 5999999999753333322 566665555 66779999986543
No 284
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=41.87 E-value=44 Score=24.12 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=26.5
Q ss_pred hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
..++|.||+|+... |++.-+-|......||++..+..
T Consensus 5 ~~~~D~vIVGsG~a--------G~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSA--------GSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCch--------hHHHHHHhcCCCCeEEEEeCCCC
Confidence 34799999998743 55544444489999999987653
No 285
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=41.87 E-value=31 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
-.+.|+++++++++|+++.|..
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d 74 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPD 74 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCC
Confidence 4489999999999999999854
No 286
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=41.73 E-value=36 Score=21.53 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEEC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVK 65 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~ 65 (81)
-|.+.+.+.+.++++|+|.++..-...... +....+.+-... .+++++=-
T Consensus 126 vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~--~~~~i~~L~~~~~~~~i~vGG 176 (213)
T cd02069 126 VPIEKILEAAKEHKADIIGLSGLLVPSLDE--MVEVAEEMNRRGIKIPLLIGG 176 (213)
T ss_pred CCHHHHHHHHHHcCCCEEEEccchhccHHH--HHHHHHHHHhcCCCCeEEEEC
Confidence 689999999999999999998775444332 234444443332 35555543
No 287
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=41.27 E-value=39 Score=24.26 Aligned_cols=50 Identities=28% Similarity=0.319 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--CccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--~~Pvlvv~~~ 67 (81)
...+.|.+..+.+++++|++.+...+.+ +|...+.+++.. .+||+.+.-+
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~sTC~sei----IGdDi~~v~~~~~~~~~Vi~v~t~ 123 (519)
T PRK02910 72 LLKDTLRRADERFQPDLIVVGPSCTAEL----LQEDLGGLAKHAGLPIPVLPLELN 123 (519)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHH----hccCHHHHHHHhCCCCCEEEEecC
Confidence 5677888888888999988887765543 466666776655 4888887644
No 288
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=41.11 E-value=91 Score=19.63 Aligned_cols=54 Identities=11% Similarity=0.022 Sum_probs=30.1
Q ss_pred ecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 11 LDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 11 ~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...+..+++.+..++.+-.-+++++..+......-+. -..+.+.....|+|++=
T Consensus 86 ~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~-~lr~~l~~~~~P~LllF 139 (185)
T PF09936_consen 86 VVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYA-ELRRMLEEEDRPVLLLF 139 (185)
T ss_dssp EESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HH-HHHHHHHH--S-EEEEE
T ss_pred cHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHH-HHHHHHhccCCeEEEEe
Confidence 3457788888888888888888888776433333332 34556677889999883
No 289
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=41.10 E-value=91 Score=19.61 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
.+.+++.+++.++|+|+++.-=....... -...+.+.....+|+++++..-+
T Consensus 21 l~~~~~~~~~~~~d~vv~~GDl~~~~~~~--~~~~~~l~~~~~~pv~~v~GNHD 72 (239)
T TIGR03729 21 LETLAQYLKKQKIDHLHIAGDISNDFQRS--LPFIEKLQELKGIKVTFNAGNHD 72 (239)
T ss_pred HHHHHHHHHhcCCCEEEECCccccchhhH--HHHHHHHHHhcCCcEEEECCCCC
Confidence 35677777788999888865422211110 01223333335689999975543
No 290
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=40.98 E-value=75 Score=21.31 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+.+.+.+++.++|.|| +|...- -.++..+.-....|++.||...
T Consensus 66 v~~~~~~~~~~~~d~IIaiGGGs~--------iD~aK~ia~~~~~p~i~IPTta 111 (337)
T cd08177 66 TEAAVAAAREAGADGIVAIGGGST--------IDLAKAIALRTGLPIIAIPTTL 111 (337)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHH--------HHHHHHHHHHhcCCEEEEcCCc
Confidence 44555666678999988 553321 1233344344488999998653
No 291
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=40.67 E-value=1e+02 Score=19.98 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=28.5
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.+.+.+.|.|++|.+..-. .--+..+.+. +++.+.|+++.|...
T Consensus 26 ~~~~~~gtdai~vGGS~~vt--~~~~~~~v~~-ik~~~lPvilfp~~~ 70 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVT--EENVDELVKA-IKEYDLPVILFPGNI 70 (232)
T ss_pred HHHHhcCCCEEEEcCCCccc--hHHHHHHHHH-HhcCCCCEEEeCCCc
Confidence 66667799999999774222 1112233333 444889999998654
No 292
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=40.57 E-value=42 Score=19.89 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
...+.+.|++++++.|+.|.+...
T Consensus 95 ~~~l~~~a~~~g~~~l~~Gh~~dD 118 (185)
T cd01993 95 RGLLNKIAKELGADKLATGHNLDD 118 (185)
T ss_pred HHHHHHHHHHcCCCEEEEcCChHH
Confidence 356678899999999999998643
No 293
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=40.53 E-value=60 Score=20.26 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCcee-cCcH
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAF-LGSV 49 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~-~gs~ 49 (81)
+.++-++.|++.+-||+.++.....+..+.+ +|-.
T Consensus 35 ~~~eAL~lA~e~~LDLV~Ispna~PPVcKImDYGKf 70 (176)
T COG0290 35 SIEEALKLAEEAGLDLVEISPNAKPPVCKIMDYGKF 70 (176)
T ss_pred eHHHHHHHHHHcCCCEEEECCCCCCCeeEeeeccch
Confidence 5677889999999999999999888776654 4443
No 294
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=40.51 E-value=67 Score=22.71 Aligned_cols=51 Identities=16% Similarity=0.261 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--------CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--------VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--------~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+++++|++-+..-+.+ +|...+.+++.. .+||+.+..+.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~ei----IGDDi~~v~~~~~~~~p~~~~~pvi~v~tpg 137 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTET----RGDDVAGALKEIRARHPELADTPIVYVSTPD 137 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhh----hhccHHHHHHHHHhhccccCCCeEEEecCCC
Confidence 4778888888888999999887765543 466666665543 57888887543
No 295
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=40.48 E-value=96 Score=21.15 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCCCEEE-Ecc
Q 038513 16 RDVICQAVEQMHIDLLV-VGS 35 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliV-mG~ 35 (81)
.+.+.+.+++.++|+|| +|.
T Consensus 74 v~~~~~~~~~~~~D~IIavGG 94 (377)
T cd08176 74 VKDGLAVFKKEGCDFIISIGG 94 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45677778889999998 664
No 296
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=40.39 E-value=44 Score=23.12 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=5.8
Q ss_pred HhcCCCEEEEcc
Q 038513 24 EQMHIDLLVVGS 35 (81)
Q Consensus 24 ~~~~~dliVmG~ 35 (81)
.+.+.+.+++-.
T Consensus 25 a~~G~~V~llEr 36 (428)
T PRK10157 25 AREGAQVLVIER 36 (428)
T ss_pred HhCCCeEEEEEc
Confidence 334555555543
No 297
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.39 E-value=1e+02 Score=19.94 Aligned_cols=51 Identities=6% Similarity=0.045 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...++.+..++.+++-+++-...+.+...-+--....++.+.+++||+.--
T Consensus 153 ~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasG 203 (258)
T PRK01033 153 DPLELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALG 203 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeC
Confidence 346677777788899777765554433332222445778888889998764
No 298
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=40.27 E-value=20 Score=19.66 Aligned_cols=37 Identities=11% Similarity=0.078 Sum_probs=22.7
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++|+|+++.+-...+ ...++.+....+||.++++..
T Consensus 45 ~~~Diil~~Pqv~~~~------~~i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 45 DDADVVLLGPQVRYML------DEVKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred CCCCEEEEChhHHHHH------HHHHHHhccCCCcEEEcChHh
Confidence 3678888876632211 223334456789999998653
No 299
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=40.12 E-value=48 Score=22.30 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=27.8
Q ss_pred CCCEEEEcccCCCCCCce--ecCcHHHHH-hhhCCccEEEECCC
Q 038513 27 HIDLLVVGSRGLGKVKRA--FLGSVSDYC-AHHAVCPILIVKPP 67 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~--~~gs~~~~v-i~~~~~Pvlvv~~~ 67 (81)
.+|++.+|+.|--..... .+|...-.+ .++...|+.|+-+.
T Consensus 198 ~vD~VlVGAEGVvEsGGIIN~iGTyq~~v~Ak~~~kPfYV~AES 241 (313)
T KOG1466|consen 198 RVDLVLVGAEGVVESGGIINKIGTYQVAVCAKSMNKPFYVVAES 241 (313)
T ss_pred hccEEEEccceeeecCceeeecccchhhhhHHhcCCCeEEEeec
Confidence 689999999984322222 357665554 45566999999543
No 300
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=40.05 E-value=48 Score=17.94 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
+.+.+.+++.+++.|+.|.+...
T Consensus 51 ~~~~~~a~~~g~~~i~~g~~~~D 73 (103)
T cd01986 51 EAAKRIAKEKGAETIATGTRRDD 73 (103)
T ss_pred HHHHHHHHHcCCCEEEEcCCcch
Confidence 45667899999999999988544
No 301
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=39.88 E-value=90 Score=20.94 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.|+..+...+....+++|.||+=+.. -...+.+.+.+.+||+=.
T Consensus 86 kgEs~~Dta~vls~y~~D~iv~R~~~---------~~~~~~~a~~~~vPVINa 129 (305)
T PRK00856 86 KGETLADTIRTLSAMGADAIVIRHPQ---------SGAARLLAESSDVPVINA 129 (305)
T ss_pred CCcCHHHHHHHHHhcCCCEEEEeCCC---------hHHHHHHHHHCCCCEEEC
Confidence 34444445555555568999985432 235677888888998754
No 302
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=39.87 E-value=60 Score=21.14 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..+.+++.++|-+++...-......--+=..-+.|...++.|+++...+
T Consensus 87 ~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P 136 (289)
T PF00701_consen 87 ELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNP 136 (289)
T ss_dssp HHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBH
T ss_pred HHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECC
Confidence 34578899999988776553332222112244578888899999998654
No 303
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=39.80 E-value=75 Score=22.07 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~~ 68 (81)
+..++|.+..+..++++|.+-+..-+.. .|...+.++++ ...||+.|+.+.
T Consensus 78 ~L~~~i~~~~~~~~p~~I~V~stC~~e~----iGdDi~~~~~~~~~~~vv~v~tpg 129 (416)
T cd01980 78 DIREAIRKLADPPAYTFIPVISLCVAET----AGVAEELLPKQIDGVRVILVRGPA 129 (416)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhhh----hcCchhhhhcccCCCeEEEecCCC
Confidence 3566677777777999999998877655 57777788774 368988887554
No 304
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=39.71 E-value=94 Score=19.38 Aligned_cols=48 Identities=4% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+.+...+.++|-+++....+.+...-.--....++.+..+.|+++-
T Consensus 148 ~~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~ 195 (230)
T TIGR00007 148 EELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIAS 195 (230)
T ss_pred HHHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence 345666667789966654433332222111234567777788887765
No 305
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=39.51 E-value=67 Score=21.94 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
+-.+.|.++++++++|+++.|...
T Consensus 14 ~d~~~l~~~~~~~~id~vi~g~E~ 37 (379)
T PRK13790 14 SDHQAILDFAKQQNVDWVVIGPEQ 37 (379)
T ss_pred CCHHHHHHHHHHhCCCEEEECCcH
Confidence 446889999999999999988753
No 306
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=39.36 E-value=95 Score=19.34 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCE-EEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 17 DVICQAVEQMHIDL-LVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 17 ~~I~~~a~~~~~dl-iVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.++.+..++.+++. ++.+......... .--....++.+.+++|++.-
T Consensus 149 ~e~~~~~~~~g~~~ii~~~~~~~g~~~G-~d~~~i~~l~~~~~ipvia~ 196 (233)
T PRK00748 149 EDLAKRFEDAGVKAIIYTDISRDGTLSG-PNVEATRELAAAVPIPVIAS 196 (233)
T ss_pred HHHHHHHHhcCCCEEEEeeecCcCCcCC-CCHHHHHHHHHhCCCCEEEe
Confidence 56667777788994 4444433222222 11245678888888998775
No 307
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=39.29 E-value=87 Score=20.36 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcH--HH-----HHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSV--SD-----YCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~--~~-----~vi~~~~~Pvlvv~~~ 67 (81)
+....+.+.+.+.++|++|++.-=. -+-+|.. +. .-+.....||+.++..
T Consensus 17 ~~~~k~~~~~~~~~~D~lviaGDlt----~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGN 73 (226)
T COG2129 17 DSLKKLLNAAADIRADLLVIAGDLT----YFHFGPKEVAEELNKLEALKELGIPVLAVPGN 73 (226)
T ss_pred HHHHHHHHHHhhccCCEEEEeccee----hhhcCchHHHHhhhHHHHHHhcCCeEEEEcCC
Confidence 3468899999999999999986422 1222332 22 2455678999999865
No 308
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=39.23 E-value=87 Score=21.36 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCC----ceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVK----RAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~----~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+|.+--.+..++.++|+|.+-..+..+.. .--+..+.+.|...+++|+.+-
T Consensus 76 ~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id 130 (319)
T PRK04452 76 DPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIG 130 (319)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEe
Confidence 34444445556889999999855444321 1113457888889999999766
No 309
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=38.87 E-value=35 Score=20.40 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=20.2
Q ss_pred EecCCHHHHHHHHHHhcCCCEEEEcccC
Q 038513 10 ILDGDARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 10 ~~~g~~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
+..+.+.....+++++.++|.++.|..-
T Consensus 71 V~v~~~~~~~~~~~~~~~~d~vv~G~d~ 98 (152)
T cd02173 71 VVIGAPYVITKELIEHFKIDVVVHGKTE 98 (152)
T ss_pred EEECCCCcchHHHHHHhCCCEEEECCCC
Confidence 3345555556778888999999999654
No 310
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=38.87 E-value=74 Score=22.51 Aligned_cols=50 Identities=6% Similarity=0.134 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHhc-CCCEEEEcccCCCCCCceecCcHHHHHhhhC-----------CccEEEECCC
Q 038513 14 DARDVICQAVEQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-----------VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-----------~~Pvlvv~~~ 67 (81)
+..++|.+..+.+ ++++|++-+...+.+ +|...+.+++.+ .+|++.+..+
T Consensus 73 ~L~~~I~~~~~~~~~p~~I~V~tTC~~ei----IGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tp 134 (454)
T cd01973 73 RVEEGVLVLARRYPDLRVIPIITTCSTEI----IGDDIEGVIRKLNEALKEEFPDREVHLIPVHTP 134 (454)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchHhh----hccCHHHHHHHHHhhhhhccCCCCCeEEEeeCC
Confidence 5778888888888 589999988876554 477777777653 5788888644
No 311
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=38.86 E-value=1.1e+02 Score=19.81 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=17.8
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
+++++++|..=+. ....+.|..+.+.+++...+..++-
T Consensus 134 ~~~villGG~~~~-~~~~~~G~~a~~~l~~~~~d~afi~ 171 (252)
T PRK10906 134 DFRIILAGGELRS-RDGGIIGEATLDFISQFRLDFGILG 171 (252)
T ss_pred CCEEEEECCEEec-CCCccCCHHHHHHHHhccCCEEEEc
Confidence 4455555544222 2233445555555555555555543
No 312
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=38.85 E-value=1e+02 Score=19.95 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 22 AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..++.++|+|||---|.+.. .-+.+-+.+.+|||+-+
T Consensus 173 ~L~~~gadlIvLDCmGYt~~-------~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 173 ELAEQGADLIVLDCMGYTQE-------MRDIVQRALGKPVLLSR 209 (221)
T ss_pred HHHhcCCCEEEEECCCCCHH-------HHHHHHHHhCCCEEeHH
Confidence 34456899999977665432 23455666889999754
No 313
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=38.74 E-value=1.1e+02 Score=20.01 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=35.0
Q ss_pred HHHHHHhcCCCEEEEcccCCC------CC-------------------CceecCcHHHHHhhhCCccEEEEC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLG------KV-------------------KRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~------~~-------------------~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
-.-.|++.++|+|++++.+-. +- .-.++..++-.++++...|++|+.
T Consensus 145 AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn 216 (238)
T COG0528 145 AALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFN 216 (238)
T ss_pred HHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEe
Confidence 344678889999999995211 10 112578889999999999999996
No 314
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=38.70 E-value=1.2e+02 Score=20.21 Aligned_cols=50 Identities=6% Similarity=-0.058 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCC-CCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLG-KVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~-~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...+++.+++.++|.|.+..+... .......-.....+.+..++||+..-
T Consensus 149 ~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 199 (319)
T TIGR00737 149 AVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNG 199 (319)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeC
Confidence 456777778889999988543221 11111112335566777889988764
No 315
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=38.55 E-value=78 Score=21.29 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+.+.+.+++.++|.|| +|...- ..++..+.....+|++.||..
T Consensus 64 ~v~~~~~~~~~~~~D~iIavGGGs~--------~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 64 NIERLAAQAKENGADVIIGIGGGKV--------LDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHH--------HHHHHHHHHHhCCCEEEecCc
Confidence 455677778888999877 443211 223344444447899999964
No 316
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.53 E-value=1.1e+02 Score=19.62 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=33.6
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.++|.+.... .++.++|.|.+-.........-..-....++.+...+|+.+--
T Consensus 29 ~~d~~~~a~~-~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~G 81 (253)
T PRK02083 29 AGDPVELAKR-YNEEGADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGG 81 (253)
T ss_pred cCCHHHHHHH-HHHcCCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeC
Confidence 4466655555 4567899888877665432222223456677788889988764
No 317
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.51 E-value=72 Score=19.71 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=21.5
Q ss_pred ecCCHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 11 LDGDARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 11 ~~g~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
-.|++ +.+.-.+++.++|.++.|....
T Consensus 92 P~gd~-~sL~~LaRqldvDILl~G~Th~ 118 (183)
T KOG3325|consen 92 PWGDP-ESLALLARQLDVDILLTGHTHK 118 (183)
T ss_pred cCCCH-HHHHHHHHhcCCcEEEeCCcee
Confidence 34555 6788889999999999998754
No 318
>PRK00861 putative lipid kinase; Reviewed
Probab=38.45 E-value=83 Score=20.57 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=31.9
Q ss_pred eEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 5 NAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 5 ~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
+++...... .-+.++.+.+.+.++|+||.... .+.+ ..+...+. ...+|+-++|.++.
T Consensus 34 ~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GG-DGTl-----~evv~~l~-~~~~~lgviP~GTg 92 (300)
T PRK00861 34 DLDIYLTTPEIGADQLAQEAIERGAELIIASGG-DGTL-----SAVAGALI-GTDIPLGIIPRGTA 92 (300)
T ss_pred ceEEEEccCCCCHHHHHHHHHhcCCCEEEEECC-hHHH-----HHHHHHHh-cCCCcEEEEcCCch
Confidence 344433332 34566666666678898765332 2222 23334443 34689999997754
No 319
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=38.30 E-value=27 Score=22.17 Aligned_cols=57 Identities=18% Similarity=0.086 Sum_probs=36.2
Q ss_pred EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 7 ~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+.....++|.+....+ ++.++|.+.+---....-.+.-.-....++.+.++.|+.+=
T Consensus 23 ~~~~~~~dP~~~a~~~-~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vg 79 (229)
T PF00977_consen 23 SETVYSGDPVEVAKAF-NEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVG 79 (229)
T ss_dssp CEECECCCHHHHHHHH-HHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEE
T ss_pred eeeEECcCHHHHHHHH-HHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEe
Confidence 3445678999988888 77799988875432111111111245678889999998874
No 320
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=38.28 E-value=93 Score=20.61 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhC--CccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHA--VCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~--~~Pvlvv~~~ 67 (81)
..+.+.+.+++.++|.|| +|...- ..++..+.... ..|++.||..
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~--------~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGST--------LDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchH--------HHHHHHHHHHhcCCCCEEEEeCC
Confidence 355677778888999988 653321 12233333333 7899999864
No 321
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=38.18 E-value=1.3e+02 Score=21.41 Aligned_cols=27 Identities=15% Similarity=0.411 Sum_probs=20.2
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCceec
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAFL 46 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~~ 46 (81)
++.++..++|+|++-+.|+......++
T Consensus 175 l~~~~~~~~DvViIDTaGr~~~d~~lm 201 (429)
T TIGR01425 175 VEKFKKENFDIIIVDTSGRHKQEDSLF 201 (429)
T ss_pred HHHHHhCCCCEEEEECCCCCcchHHHH
Confidence 445556689999999999887665554
No 322
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=38.13 E-value=69 Score=21.11 Aligned_cols=51 Identities=8% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-Ccc-EEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCP-ILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~P-vlvv~~~ 67 (81)
.+.+....+..++|++++-+.|++......+....+ +++.. +.- .||+...
T Consensus 143 ~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~-~~~~~~~~~~~LVl~a~ 195 (270)
T PRK06731 143 TRALTYFKEEARVDYILIDTAGKNYRASETVEEMIE-TMGQVEPDYICLTLSAS 195 (270)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHH-HHhhhCCCeEEEEEcCc
Confidence 333433444457999999999998765544443332 33322 222 5666543
No 323
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=38.09 E-value=1.5e+02 Score=21.18 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=26.3
Q ss_pred cCCCEEEEcccCCCCCCcee-cCcHHHHHhhhCCccEEEECC
Q 038513 26 MHIDLLVVGSRGLGKVKRAF-LGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~-~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.++|++|+-..+.-.-...+ -+....++++...+||++|-+
T Consensus 121 ~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~apVILV~d 162 (475)
T TIGR00313 121 REYDYVVIEGAGSPAEINLLKRDLANMRIAELANADAILVAD 162 (475)
T ss_pred hcCCEEEEECCCCccccccCcCCchHHHHHHHhCCCEEEEEe
Confidence 37999998766432110111 144567888899999999943
No 324
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=37.93 E-value=1.1e+02 Score=19.69 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+++.+..+++|-|++........ .. .-+-+....+||+.+..
T Consensus 48 ~~i~~l~~~~vdgiii~~~~~~~~-----~~-~~~~~~~~giPvV~~~~ 90 (303)
T cd01539 48 EQIDTALAKGVDLLAVNLVDPTAA-----QT-VINKAKQKNIPVIFFNR 90 (303)
T ss_pred HHHHHHHHcCCCEEEEecCchhhH-----HH-HHHHHHHCCCCEEEeCC
Confidence 455556777999888864321111 11 22345667899999854
No 325
>TIGR00035 asp_race aspartate racemase.
Probab=37.73 E-value=95 Score=19.57 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 22 AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..++.++|+|||+-...+.+ .+++-..+++|++=+-
T Consensus 70 ~L~~~g~d~iviaCNTah~~--------~~~l~~~~~iPii~i~ 105 (229)
T TIGR00035 70 KLENAGADFIIMPCNTAHKF--------AEDIQKAIGIPLISMI 105 (229)
T ss_pred HHHHcCCCEEEECCccHHHH--------HHHHHHhCCCCEechH
Confidence 34457899999998753321 3455556778877653
No 326
>PLN02527 aspartate carbamoyltransferase
Probab=37.73 E-value=1e+02 Score=20.69 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
|+..+...+....+ +|+||+=+.. ....+.+...+.+||+=.
T Consensus 83 gEs~~Dta~vls~y-~D~iviR~~~---------~~~~~~~a~~~~vPVINa 124 (306)
T PLN02527 83 GETLEDTIRTVEGY-SDIIVLRHFE---------SGAARRAAATAEIPVINA 124 (306)
T ss_pred CcCHHHHHHHHHHh-CcEEEEECCC---------hhHHHHHHHhCCCCEEEC
Confidence 44444444444444 9999986432 234678889999996533
No 327
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=37.44 E-value=1.4e+02 Score=20.75 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=30.0
Q ss_pred hcCCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCCC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
+..+|.+++|+.+-....... .|+-.-.++ +...+|++|+-+..
T Consensus 244 ~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~~ 290 (363)
T PRK05772 244 KDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPTS 290 (363)
T ss_pred hcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEcccc
Confidence 357999999998754433332 577665555 66779999985543
No 328
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.28 E-value=1.2e+02 Score=19.97 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCc---------eecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKR---------AFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~---------~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..+++..++.++|.|-+.......... ...-.....+-+..++||+..-.
T Consensus 231 ~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Gg 289 (327)
T cd02803 231 IEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGG 289 (327)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCC
Confidence 456777888899999987765332111 11113456677778899988743
No 329
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=37.02 E-value=48 Score=21.37 Aligned_cols=23 Identities=4% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
..+.++|+++++|.|++|.+...
T Consensus 121 ~~l~~~a~~~g~~~Ia~GH~~dD 143 (258)
T PRK10696 121 GILYRTARELGATKIALGHHRDD 143 (258)
T ss_pred HHHHHHHHHcCCCEEEEcCchHH
Confidence 45677899999999999999654
No 330
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=36.94 E-value=47 Score=20.71 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=25.1
Q ss_pred cCCCEEEEcccCCCCCCceecCc----HHHH--HhhhCCccEEEECCCCCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGS----VSDY--CAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs----~~~~--vi~~~~~Pvlvv~~~~~~ 70 (81)
..+|++++.....+.......|= ++.. ...+..+||+++|...+.
T Consensus 87 GkYD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~ 137 (187)
T COG1036 87 GKYDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVPVDYKE 137 (187)
T ss_pred ccccEEEEcccccchHHHHHhhhHHHHHHHHHHHhcCCCCcEEEecccccC
Confidence 35788777765544433333221 1222 233556999999976543
No 331
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=36.91 E-value=18 Score=24.62 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...++|.+..+++++++|++-+.--+.+-.-=+.++.+.+=...+.|++.+..+.
T Consensus 61 kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~~vi~v~~~g 115 (398)
T PF00148_consen 61 KLREAIKEIAEKYKPKAIFVVTSCVPEIIGDDIEAVARELQEEYGIPVIPVHTPG 115 (398)
T ss_dssp HHHHHHHHHHHHHSTSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSSEEEEEE--T
T ss_pred hHHHHHHHHHhcCCCcEEEEECCCCHHHhCCCHHHHHHHhhcccCCcEEEEECCC
Confidence 4678888999999999999987765443322233444444444557899887543
No 332
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=36.72 E-value=56 Score=19.83 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+..++.++|++|+...+ ++ ....++...+...+-+++.
T Consensus 68 ~~~~~~~l~~~~~Dl~v~~~~~-----~i----l~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 68 DEELLELLESLNPDLIVVAGYG-----RI----LPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp HHHHHHHHHHTT-SEEEESS-S-----S-------HHHHHHSTTSEEEEESS
T ss_pred hhHHHHHHHhhccceeehhhhH-----HH----hhhhhhhcccccEEEEeec
Confidence 4568888999999999997653 11 2567777777777777654
No 333
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=36.72 E-value=70 Score=19.47 Aligned_cols=40 Identities=13% Similarity=0.253 Sum_probs=26.2
Q ss_pred HHHHHHH----hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 18 VICQAVE----QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 18 ~I~~~a~----~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
.+.+.++ +.++|.|++|-.+.+.+. ...+.+....++||+
T Consensus 162 ~~~~~~~~l~~~~~~d~iiLgCt~l~~~~-----~~~~~l~~~~gipVi 205 (216)
T PF01177_consen 162 ILAEAARELIKEDGADAIILGCTHLPLLL-----GAIEALEEELGIPVI 205 (216)
T ss_dssp HHHHHHHHHHHCTTSSEEEEESTTGGGGH-----HHHHHHHHTCSSEEE
T ss_pred HHHHHHHHHhccCCCCEEEECCCchHHHH-----HHHHhhcccCCCEEE
Confidence 4555554 789999999977654321 234566666677775
No 334
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=36.63 E-value=73 Score=21.36 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=27.9
Q ss_pred CCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
++|.+++|+..-......+ .|+..-.++ ++..+||+|+-+..
T Consensus 188 ~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~ 232 (310)
T PRK08535 188 DVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETY 232 (310)
T ss_pred hCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEecccc
Confidence 5999999998754333333 466554444 66679999995443
No 335
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=36.51 E-value=1.1e+02 Score=19.09 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=26.1
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceec---CcHHHHHhhhCCccEEEEC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFL---GSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~---gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.+.++|+|+++.++......... -....++.....+||+..-
T Consensus 133 ~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~G 180 (221)
T PRK01130 133 LAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEG 180 (221)
T ss_pred HHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEEC
Confidence 45666789999875444322111111 1345667777788988764
No 336
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=36.46 E-value=1.4e+02 Score=21.01 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcH-HHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSV-SDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~-~~~vi~~~~~Pvlvv~~~~ 68 (81)
.-.+.|.+.+++.++|=+|.=...--.... +++. ..+-+....+|+|.+-...
T Consensus 348 ~R~~~l~~li~e~~vDGVI~~~~~~C~~~s--~e~~~ik~~l~~~GIP~L~ietD~ 401 (430)
T TIGR03191 348 IKSEMMLNIARDWNVDGCMLHLNRGCEGLS--IGIMENRLAIAKAGIPIMTFEGNM 401 (430)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCccch--HhHHHHHHHHHHcCCCEEEEECCC
Confidence 357788889999999999987765332222 2333 2456678899999996544
No 337
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=36.42 E-value=1e+02 Score=18.81 Aligned_cols=52 Identities=10% Similarity=0.011 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh--CCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH--AVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~--~~~Pvlvv~~~~ 68 (81)
..+.+++.+++.++|+|+++.-=-...... ......++.. .+.|+..++..-
T Consensus 20 ~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~--~~~~~~~l~~l~~~~~v~~v~GNH 73 (223)
T cd07385 20 RLERLVEKINALKPDLVVLTGDLVDGSVDV--LELLLELLKKLKAPLGVYAVLGNH 73 (223)
T ss_pred HHHHHHHHHhccCCCEEEEcCcccCCcchh--hHHHHHHHhccCCCCCEEEECCCc
Confidence 457788888888999999865422211111 1233444554 348899887543
No 338
>PRK12569 hypothetical protein; Provisional
Probab=36.36 E-value=1.1e+02 Score=20.18 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
..++.|++.+++.+.+|++++.. ||...+..+....+++-
T Consensus 127 ~la~av~~ai~~~~~~l~l~~~~----------~s~~~~~A~~~Gl~~~~ 166 (245)
T PRK12569 127 ALARLLVEALARLDPLLILYCMD----------GSATERAARELGQPVVR 166 (245)
T ss_pred HHHHHHHHHHHHhCCCcEEEecC----------CcHHHHHHHHcCCCeEE
Confidence 46788999999999999999855 67777888888877764
No 339
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=36.32 E-value=75 Score=20.35 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=24.8
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
+.....++|||+++........ +.-..+.+++..+||++.|
T Consensus 72 E~i~~l~PDlvi~~~~~~~~~~----~~~~~~~l~~~gipv~~~p 112 (287)
T TIGR03868 72 EAVLETEPDLVYAGWESNLTAE----GAGERADLASLGVNTYVAP 112 (287)
T ss_pred hHhhcCCCCEEEeccccccCCC----CCCCHHHHHHCCCeEEECc
Confidence 3444568999998543211000 1123467788999999986
No 340
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=36.05 E-value=78 Score=22.37 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHhc-CCCEEEEcccCCCCCCceecCcHHHHHhh----hCC-ccEEEECCCC
Q 038513 14 DARDVICQAVEQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAH----HAV-CPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~-~Pvlvv~~~~ 68 (81)
...++|.+..+.+ ++++|++-+.-.+.+ +|...+.+++ ..+ +||+.++.+.
T Consensus 111 kL~~aI~e~~~~~p~p~~I~V~stC~~~l----IGDDi~~v~~e~~~~~~~~pvv~v~t~g 167 (457)
T TIGR01284 111 KLKRCILEAFREFPEIKRMYTYATCTTAL----IGDDIDAIAREVMEEIPDVDVFAINAPG 167 (457)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCChHHh----hccCHHHHHHHHHHhcCCCeEEEeeCCC
Confidence 4677888888877 577777666554444 3555555554 444 8888887543
No 341
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.03 E-value=54 Score=19.81 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+.+++.+++.++|+|++|-.. +.++.+ ..+..+..+.++++-
T Consensus 87 ~~~~i~~~I~~~~pdiv~vglG~--PkQE~~----~~~~~~~l~~~v~~~ 130 (171)
T cd06533 87 EEEEIIERINASGADILFVGLGA--PKQELW----IARHKDRLPVPVAIG 130 (171)
T ss_pred hHHHHHHHHHHcCCCEEEEECCC--CHHHHH----HHHHHHHCCCCEEEE
Confidence 34558899999999999998652 334434 456666667777665
No 342
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=36.03 E-value=63 Score=22.22 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=29.9
Q ss_pred HHHHhcCCCEEEEcccCCCCCCcee---------cCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAF---------LGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~---------~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.+++.++|+|.+|.+.-.....+- +=..+..|.|.++.|+++.--+
T Consensus 49 ~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmP 104 (332)
T PLN02424 49 VHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLP 104 (332)
T ss_pred HHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCC
Confidence 3455668999999987522111111 1145778889999999996543
No 343
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=36.02 E-value=1.2e+02 Score=20.17 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..+.+.+..+|+|+|...-.. ... -...+++-...++|++++-..
T Consensus 37 eal~~l~~~~pDlVllD~~mp~-~~G---~e~l~~l~~~~~~pvivvs~~ 82 (337)
T PRK12555 37 QAVERCAAQPPDVILMDLEMPR-MDG---VEATRRIMAERPCPILIVTSL 82 (337)
T ss_pred HHHHHHhccCCCEEEEcCCCCC-CCH---HHHHHHHHHHCCCcEEEEeCC
Confidence 3344456678999999765221 211 133455555667899888643
No 344
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=35.92 E-value=51 Score=21.37 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.+.|++.+.+.++|+|++|-.. +.++.+ ..+.....+.++++-
T Consensus 146 ~~~i~~~I~~s~~dil~VglG~--PkQE~~----~~~~~~~~~~~v~~g 188 (243)
T PRK03692 146 RQALFERIHASGAKIVTVAMGS--PKQEIF----MRDCRLVYPDALYMG 188 (243)
T ss_pred HHHHHHHHHhcCCCEEEEECCC--cHHHHH----HHHHHHhCCCCEEEE
Confidence 4568999999999999998652 334444 356677777887653
No 345
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.74 E-value=1.5e+02 Score=20.40 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=29.1
Q ss_pred hcCCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKP 66 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~ 66 (81)
..++|++++|+.+-....... .|+-.-.++ ++-.+|++|+-+
T Consensus 213 ~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 213 KKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred hcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 347999999998754433333 576665555 666799999854
No 346
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=35.65 E-value=81 Score=22.37 Aligned_cols=51 Identities=6% Similarity=0.121 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHhc-CCCEEEEcccCCCCCCceecCcHHHHHhhhC-----------CccEEEECCCC
Q 038513 14 DARDVICQAVEQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-----------VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-----------~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+ ++++|++-+...+.+ +|...+.+++.+ .+||+-|..+.
T Consensus 76 kL~~aI~~~~~~~~~p~~I~V~ttC~~ei----IGDDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpg 138 (457)
T TIGR02932 76 RIEEGVLTLARRYPNLRVIPIITTCSTET----IGDDIEGSIRKVNRALKKEFPDRKIKLVPVHTPS 138 (457)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCchHHh----hcCCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCC
Confidence 5778888888887 689999988866554 477777777643 58888887543
No 347
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=35.31 E-value=79 Score=22.24 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCC---CceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKV---KRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~---~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+|.... +.++-+|+|.+.|+..- ..+.+..+++++-+....||-.++.
T Consensus 37 pTI~~l~-~~gakvvl~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~f~~d 88 (397)
T cd00318 37 PTIKYLL-EQGAKVVLLSHLGRPKGEPNEKYSLAPVAKALSELLGQPVTFAND 88 (397)
T ss_pred HHHHHHH-HCCCeEEEEEecCCCCCCCCCCCCHHHHHHHHHHHHCCCcEECCC
Confidence 3444444 45889999999887732 2456788889999999999998864
No 348
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=35.27 E-value=1e+02 Score=18.39 Aligned_cols=54 Identities=6% Similarity=-0.041 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHH----HHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVS----DYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~----~~vi~~~~~Pvlvv~~~~ 68 (81)
+..+.+.+.+++.++|.||+..-=........ -... ........+|+++++..-
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~i~GNH 85 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLKHSFGGLS-RQEFEEVAFLRLLAKDVDVILIRGNH 85 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccccccC-HHHHHHHHHHHhccCCCeEEEEcccC
Confidence 34577888888899999888654322211110 0001 122445678999997543
No 349
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=35.26 E-value=73 Score=16.84 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
..+.+..++.++|++|--......... --|...++..-...+|.+
T Consensus 45 ~~i~~~i~~g~id~VIn~~~~~~~~~~-~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 45 LAILDLIKNGEIDLVINTLYPLGAQPH-EDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHHhcCCCeEEEEECCCcCcceec-cCcHHHHHHHHHcCCCee
Confidence 357777888888888875542111111 024445566666666653
No 350
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=35.12 E-value=68 Score=21.14 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=31.8
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.-.+...-+...++.--+-+.++|+|||.....+ +--+-+.-..+.+..++-+.+.
T Consensus 63 lvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALa---d~~l~erl~~lak~~~~rv~~p 118 (255)
T COG1712 63 LVVEAASPEAVREYVPKILKAGIDVIVMSVGALA---DEGLRERLRELAKCGGARVYLP 118 (255)
T ss_pred eeeeeCCHHHHHHHhHHHHhcCCCEEEEechhcc---ChHHHHHHHHHHhcCCcEEEec
Confidence 3334444456667777777889999999866443 1111233344555555555544
No 351
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=35.04 E-value=1e+02 Score=20.39 Aligned_cols=48 Identities=13% Similarity=0.055 Sum_probs=31.2
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCcee---------cCcHHHHHhhhCCccEEEECCC
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAF---------LGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~---------~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+.+++.++|+|.+|...-.....+- +=..++.|.+.++.|++++.-+
T Consensus 28 A~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmP 84 (263)
T TIGR00222 28 AKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLP 84 (263)
T ss_pred HHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 34556668999999965432221111 1146788889999999997654
No 352
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=34.83 E-value=92 Score=17.85 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=11.4
Q ss_pred CcHHHHHhhhCCccEEEECC
Q 038513 47 GSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 47 gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+-...++++....|+++|-.
T Consensus 57 ~~~~~d~~~~~~~~vllV~~ 76 (134)
T cd03109 57 DFTNADVAKELNLPAILVTS 76 (134)
T ss_pred CCCHHHHHHHhCCCEEEEEc
Confidence 33455666666666666643
No 353
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=34.69 E-value=1.1e+02 Score=20.76 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
|+...-..+....+ +|+||+=... ....+.+...+++||+=
T Consensus 87 gEsl~DTarvls~y-~D~iviR~~~---------~~~~~~~a~~s~vPVIN 127 (332)
T PRK04284 87 KESTKDTARVLGGM-YDGIEYRGFS---------QRTVETLAEYSGVPVWN 127 (332)
T ss_pred CcCHHHHHHHHHHh-CCEEEEecCc---------hHHHHHHHHhCCCCEEE
Confidence 44333344444444 9999994332 34577888889999763
No 354
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=34.35 E-value=52 Score=23.24 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=26.4
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+|.||+|+. +-|++....+.....-||++-..
T Consensus 4 ~~DViViGtG--------L~e~ilAa~Ls~~GkkVLhlD~n 36 (443)
T PTZ00363 4 TYDVIVCGTG--------LKECILSGLLSVNGKKVLHMDRN 36 (443)
T ss_pred cceEEEECCC--------hHHHHHHhhhhhCCCEEEEecCC
Confidence 6899999876 44788888889999999999543
No 355
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=34.33 E-value=1.4e+02 Score=19.87 Aligned_cols=62 Identities=10% Similarity=-0.013 Sum_probs=34.6
Q ss_pred ceEEEEEecCC-----HHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEEC
Q 038513 4 VNAQTLILDGD-----ARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 4 v~~~~~~~~g~-----~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++++..++.|. -...+++..++.+++.|.+-.+......+ ..--....++....++||+.--
T Consensus 123 ~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NG 190 (309)
T PF01207_consen 123 IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANG 190 (309)
T ss_dssp SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEES
T ss_pred cceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcC
Confidence 45555555542 25667788888999999987764432222 1222334567777788887653
No 356
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=34.27 E-value=1.4e+02 Score=21.67 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=33.7
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccE
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPI 61 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pv 61 (81)
+.+.+..+...+.|.--+.+-++|+|++..+.-+. |-.....++++.+|.
T Consensus 306 I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGT------GAsP~~~~~~~GiP~ 355 (485)
T COG0069 306 ISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGT------GASPLTSIDHAGIPW 355 (485)
T ss_pred EEEEEecccchHHHHhhhhhccCCEEEEcCCCCcC------CCCcHhHhhcCCchH
Confidence 55666777778888776667799999997664332 344455666666664
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=34.24 E-value=1.6e+02 Score=20.89 Aligned_cols=26 Identities=12% Similarity=0.275 Sum_probs=19.4
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCcee
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAF 45 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~ 45 (81)
.+.++..++|+|++-+.|+......+
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~~d~~l 201 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLHIDEEL 201 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcccCHHH
Confidence 35666778999999999987654443
No 358
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=34.22 E-value=62 Score=26.01 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
-|.+.|++.++++++|+|.|..--......+ ..+.+.+-+.- .+||++--..
T Consensus 770 Vp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m--~~vi~~L~~~g~~v~v~vGGa~ 822 (1178)
T TIGR02082 770 VPIEKILEAAKDHNADVIGLSGLITPSLDEM--KEVAEEMNRRGITIPLLIGGAA 822 (1178)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCcccccHHHH--HHHHHHHHhcCCCceEEEeccc
Confidence 5899999999999999999987655444432 34455554442 3777776543
No 359
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=34.06 E-value=57 Score=21.09 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
..+..+...++..+.||++||.+.-
T Consensus 101 ~vAKiLk~~vekek~~lVllGKQAI 125 (254)
T KOG3180|consen 101 HVAKILKKLVEKEKSDLVLLGKQAI 125 (254)
T ss_pred HHHHHHHHHHHhhcCCEEEEccccc
Confidence 4677788899999999999998753
No 360
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=33.94 E-value=19 Score=23.37 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
..+.+.|.+.++|.|+.|.+.....
T Consensus 110 ~~l~~~a~~~g~~~i~tgH~~dD~~ 134 (298)
T COG0037 110 GLLYKIAKELGADKIATGHHLDDQA 134 (298)
T ss_pred HHHHHHHHHcCCCeEEeccCcHHHH
Confidence 4466789999999999999976644
No 361
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=33.90 E-value=1.3e+02 Score=19.21 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..+....+++|-|+++....+.. ...-..+...++|++++..
T Consensus 74 ~~~~l~~~~~dgiii~~~~~~~~------~~~l~~~~~~~ipvV~~~~ 115 (295)
T PRK10653 74 NVQDLTVRGTKILLINPTDSDAV------GNAVKMANQANIPVITLDR 115 (295)
T ss_pred HHHHHHHcCCCEEEEcCCChHHH------HHHHHHHHHCCCCEEEEcc
Confidence 34444555777666654321110 0122456667899999864
No 362
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=33.90 E-value=44 Score=21.76 Aligned_cols=48 Identities=6% Similarity=0.163 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 17 DVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 17 ~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+.+.+.+.+.+-|+|| .|++...++.+++.++..-.++......+.+.
T Consensus 71 D~Lve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh 119 (241)
T PRK13886 71 DALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVH 119 (241)
T ss_pred HHHHHHHhccCCCEEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEE
Confidence 3444444334445444 44444445555555555555555555544443
No 363
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=33.89 E-value=1.7e+02 Score=20.50 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHH---HhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDY---CAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~---vi~~~~~Pvlvv~~~ 67 (81)
.+.|.+.+.+.++|+|+++.-=-..... ...-....+ -+....+|+++++..
T Consensus 28 l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~I~GN 83 (407)
T PRK10966 28 LDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVVLAGN 83 (407)
T ss_pred HHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 4568888889999999997542211100 000000111 234567999999644
No 364
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=33.79 E-value=48 Score=20.48 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=19.6
Q ss_pred CcHHHHHhhhCCccEEEECCCCC
Q 038513 47 GSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 47 gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
+.++..+++++..|+|+|-+...
T Consensus 25 p~v~ammIkkAkrPLlivGp~~~ 47 (170)
T COG1880 25 PEVVAMMIKKAKRPLLIVGPLAL 47 (170)
T ss_pred cHHHHHHHHhcCCceEEeccccc
Confidence 78889999999999999976543
No 365
>COG1436 NtpG Archaeal/vacuolar-type H+-ATPase subunit F [Energy production and conversion]
Probab=33.72 E-value=63 Score=18.29 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+.+..++++ ++++|++-.+-.+.+ ....++..+....|.++.=+.
T Consensus 35 ~~~~~~~l~~~-~~~iIiite~~a~~i-----~~~i~~~~~~~~~P~iv~IPs 81 (104)
T COG1436 35 LRAALRVLAED-DVGIILITEDLAEKI-----REEIRRIIRSSVLPAIVEIPS 81 (104)
T ss_pred HHHHHHhhccC-CceEEEEeHHHHhhh-----HHHHHHHhhccCccEEEEeCC
Confidence 45555556666 999999987744433 345566666666888776444
No 366
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=33.68 E-value=52 Score=21.39 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
...|.+..++.|+++++|+|-+.+.-..
T Consensus 140 ~dvP~e~fve~a~e~k~d~v~~SalMTt 167 (227)
T COG5012 140 RDVPVEEFVEKAKELKPDLVSMSALMTT 167 (227)
T ss_pred CCCCHHHHHHHHHHcCCcEEechHHHHH
Confidence 3468999999999999999998876443
No 367
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=33.67 E-value=1.5e+02 Score=20.89 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=24.7
Q ss_pred CCCEEEEcccC-C----CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRG-L----GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~-~----~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
++|++|+-..+ - .+... .+| ..++++...+||++|-...
T Consensus 77 ~~D~viVEGagGl~~g~~p~~~--~~s-~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 77 GTDYSIIEGVRGLYDGISAITD--YGS-TASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred cCCEEEEecCCccccCCCCCCC--Ccc-HHHHHHHhCCCEEEEECCc
Confidence 68988854432 1 11111 244 4479999999999996543
No 368
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=33.64 E-value=91 Score=18.97 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
...+.++|++.+++.|+.|.+...
T Consensus 84 ~~~l~~~a~~~g~~~I~~G~~~dD 107 (202)
T cd01990 84 YEALKEIAEELGLDVVLDGTNADD 107 (202)
T ss_pred HHHHHHHHHHCCCCEEEEcCcccc
Confidence 446678899999999999988654
No 369
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=33.64 E-value=78 Score=19.05 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.+.+++.+.|-++++|.|++.+..-... .++-...+.+-..-.-+++++
T Consensus 50 ~tp~e~v~aA~~~dv~vIgvSsl~g~h~--~l~~~lve~lre~G~~~i~v~ 98 (143)
T COG2185 50 QTPEEAVRAAVEEDVDVIGVSSLDGGHL--TLVPGLVEALREAGVEDILVV 98 (143)
T ss_pred CCHHHHHHHHHhcCCCEEEEEeccchHH--HHHHHHHHHHHHhCCcceEEe
Confidence 4558888888888999999988754432 233455555555555566633
No 370
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=33.57 E-value=1.4e+02 Score=20.13 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=23.5
Q ss_pred hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..++|||++....... ..+.-...-+.+..+||++++.
T Consensus 119 al~PDLVi~~~~~~~~----~~~~~~~~~L~~~Gipvv~~~~ 156 (374)
T PRK14048 119 TLKADLAILANWQADT----EAGQRAIEYLESIGVPVIVVDF 156 (374)
T ss_pred hcCCCEEEecCccccc----ccchhHHHHHHHCCCCEEEEeC
Confidence 3589999875332111 1122345677888999999964
No 371
>KOG0830 consensus 40S ribosomal protein SA (P40)/Laminin receptor 1 [Translation, ribosomal structure and biogenesis]
Probab=33.57 E-value=78 Score=20.87 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=31.6
Q ss_pred HHhcCCCEEEEcccCCC--------------C-CCceecCcHHHHHhhhCCcc-EEEECCCC
Q 038513 23 VEQMHIDLLVVGSRGLG--------------K-VKRAFLGSVSDYCAHHAVCP-ILIVKPPK 68 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~--------------~-~~~~~~gs~~~~vi~~~~~P-vlvv~~~~ 68 (81)
+-++-+|+.|++++..+ + ..++.-|+.+.++-..-.-| +|||.++.
T Consensus 38 aienp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ftn~iq~~f~epr~lvvtdpr 99 (254)
T KOG0830|consen 38 AIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPR 99 (254)
T ss_pred hccCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccchHHHHhhcCCceeeecCcc
Confidence 34567888888887322 1 23566899999999988877 66665443
No 372
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=33.40 E-value=42 Score=20.02 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=18.0
Q ss_pred ecCCHHHHHHHHHHhcCCCEEEEccc
Q 038513 11 LDGDARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 11 ~~g~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
..+.+.....+++++.++|.++.|..
T Consensus 72 i~~~~~~~~~~~i~~~~~d~vv~G~d 97 (150)
T cd02174 72 VEGAPYVTTPEFLDKYKCDYVAHGDD 97 (150)
T ss_pred EECCCCCChHHHHHHhCCCEEEECCC
Confidence 34445445566777889999999854
No 373
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.29 E-value=1.7e+02 Score=20.33 Aligned_cols=49 Identities=10% Similarity=0.078 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCcee--cCcHHHHHhhhCCccEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAF--LGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi~~~~~Pvlv 63 (81)
...++.+.+.+.++|+|++..+..+.....- ......++++..++||+.
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa 192 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV 192 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE
Confidence 4678888888999999999543211000000 011234566666778765
No 374
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=33.13 E-value=85 Score=16.94 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=10.6
Q ss_pred HHHHhhhCCccEEEECC
Q 038513 50 SDYCAHHAVCPILIVKP 66 (81)
Q Consensus 50 ~~~vi~~~~~Pvlvv~~ 66 (81)
+.+...+..+|++..+.
T Consensus 67 vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 67 VKKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHHHHHHcCCcEEEECC
Confidence 45555666677777763
No 375
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.02 E-value=58 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
....+.+..+++++|++|+....
T Consensus 157 ~~~~~~~~l~~~~~Dlivlagym 179 (289)
T PRK13010 157 QEAQILDLIETSGAELVVLARYM 179 (289)
T ss_pred hHHHHHHHHHHhCCCEEEEehhh
Confidence 45678888999999999998653
No 376
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=33.00 E-value=56 Score=23.39 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEccc
Q 038513 14 DARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
.-.+.|+++++++++|++|.|..
T Consensus 56 ~d~~~l~~~a~~~~id~Vi~g~E 78 (486)
T PRK05784 56 NSPEEVKKVAKEVNPDLVVIGPE 78 (486)
T ss_pred CCHHHHHHHHHHhCCCEEEECCc
Confidence 44678999999999999999764
No 377
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=32.81 E-value=1.7e+02 Score=20.33 Aligned_cols=49 Identities=14% Similarity=0.028 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCC--ceecCcHHHHHhhhCCccEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVK--RAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~--~~~~gs~~~~vi~~~~~Pvlv 63 (81)
...++.+.+.+.++|+|++-.+-.+... ..---....++++..++||++
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 5678889999999999998643211100 000001234677788899986
No 378
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=32.76 E-value=1.2e+02 Score=20.59 Aligned_cols=42 Identities=14% Similarity=0.091 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
|+...-..+....+ +|.||+=+. --...+.+.+.+++||+=-
T Consensus 88 gEsl~DTarvls~y-~D~iv~R~~---------~~~~~~~~a~~~~vPVINa 129 (334)
T PRK01713 88 KESMKDTARVLGRM-YDAIEYRGF---------KQSIVNELAEYAGVPVFNG 129 (334)
T ss_pred CcCHHHHHHHHHHh-CCEEEEEcC---------chHHHHHHHHhCCCCEEEC
Confidence 43333344444444 899998432 1345778888888987644
No 379
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=32.70 E-value=1.5e+02 Score=20.04 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCCEEE-Ecc
Q 038513 16 RDVICQAVEQMHIDLLV-VGS 35 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliV-mG~ 35 (81)
.+.+.+.+++.++|.|| +|.
T Consensus 69 v~~~~~~~~~~~~d~IiaiGG 89 (370)
T cd08551 69 VDAAVAAYREEGCDGVIAVGG 89 (370)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45566778888999988 554
No 380
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=32.66 E-value=1.3e+02 Score=18.72 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=23.1
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
++.....++|-|++.....+.. ...-..+.+.++|++.+..
T Consensus 49 i~~l~~~~vdgiii~~~~~~~~------~~~~~~l~~~~iPvv~~~~ 89 (272)
T cd06301 49 VENFIAQGVDAIIVVPVDTAAT------APIVKAANAAGIPLVYVNR 89 (272)
T ss_pred HHHHHHcCCCEEEEecCchhhh------HHHHHHHHHCCCeEEEecC
Confidence 3444455788777754422111 1122345678899998864
No 381
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=32.50 E-value=90 Score=17.01 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++.+.|.+++.+++. .++.+... ..-.++.....+|++.++.
T Consensus 51 ~~addci~~~~~~~~~--~~VaT~D~---------~Lr~~lr~~~GvPvi~l~~ 93 (101)
T PF04900_consen 51 GSADDCILDLAGKNNK--YIVATQDK---------ELRRRLRKIPGVPVIYLRR 93 (101)
T ss_pred cCHHHHHHHHhccCCe--EEEEecCH---------HHHHHHhcCCCCCEEEEEC
Confidence 4788999999987777 44444421 2233444477899999974
No 382
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=32.41 E-value=1.3e+02 Score=18.84 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred EEecCC--HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEEC
Q 038513 9 LILDGD--ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVK 65 (81)
Q Consensus 9 ~~~~g~--~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~ 65 (81)
.+..|+ ...++-..|++.+...|=+.+...+.+ -|+-.-+++..++ =||+|+=
T Consensus 4 lvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~l----sG~elV~lIk~a~~DPV~VMf 59 (180)
T PF14097_consen 4 LVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPL----SGEELVELIKQAPHDPVLVMF 59 (180)
T ss_pred EEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcC----CHHHHHHHHHhCCCCCEEEEE
Confidence 345664 455666677877777777766554444 3666667777776 7888874
No 383
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=32.38 E-value=1.6e+02 Score=19.96 Aligned_cols=52 Identities=6% Similarity=0.029 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+.....++..|.+.+-+.-|.-+.++..++ |...-+-+++..+|+.++.+.
T Consensus 128 ~S~~v~~~l~~A~~~~k~~~V~VtESRP~~e----G~~~ak~L~~~gI~~~~I~Ds 179 (301)
T COG1184 128 FSKTVLEVLKTAADRGKRFKVIVTESRPRGE----GRIMAKELRQSGIPVTVIVDS 179 (301)
T ss_pred CcHHHHHHHHHhhhcCCceEEEEEcCCCcch----HHHHHHHHHHcCCceEEEech
Confidence 3456777777777776644444444444443 888889999999999999764
No 384
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=32.26 E-value=54 Score=22.00 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=34.0
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecC--------cHHHHHhhhCCccEEEE
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLG--------SVSDYCAHHAVCPILIV 64 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g--------s~~~~vi~~~~~Pvlvv 64 (81)
.|.+-+..+++..+.++|++++|....--+... +| .+.++|+.++. -.||+
T Consensus 186 qGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r-~~~~~~E~~irNl~~ii~~~~-~~lVi 244 (304)
T COG2248 186 QGPINDEALEFILEKRPDVLIIGGPPTYLLGYR-VGPKSLEKGIRNLERIIEETN-ATLVI 244 (304)
T ss_pred cCCCccHHHHHHHhcCCCEEEecCCchhHhhhh-cChHHHHHHHHHHHHHHHhCc-ceEEE
Confidence 467778899999999999999997754222222 23 23456777777 44444
No 385
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=32.24 E-value=64 Score=20.40 Aligned_cols=22 Identities=14% Similarity=0.259 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.+++.+..++.++|++|+....
T Consensus 67 ~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 67 PDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred hHHHHHHHHhcCCCEEEEeCcc
Confidence 4577888899999999997653
No 386
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=32.23 E-value=1.7e+02 Score=20.30 Aligned_cols=55 Identities=11% Similarity=0.097 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCcee----cCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAF----LGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~----~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+|.+=-.+..+++++|||-+---+.++.-.-- --.+.+.+++..+||+++=-.+
T Consensus 150 edP~eWArk~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSG 208 (403)
T COG2069 150 EDPGEWARKCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSG 208 (403)
T ss_pred hCHHHHHHHHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCC
Confidence 356666777889999999987655544332211 1245688999999999886543
No 387
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=32.22 E-value=79 Score=19.65 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCcee---cCcHHHHHhhhC-CccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAF---LGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~---~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
|.-..++.++..+.++|++++---.... .+.| +....+.|-..- .+|++++...
T Consensus 45 ~~le~~~a~~ia~~~a~~~~ld~~~N~~-~~~~~~~~~~fv~~iR~~hP~tPIllv~~~ 102 (178)
T PF14606_consen 45 GKLEPEVADLIAEIDADLIVLDCGPNMS-PEEFRERLDGFVKTIREAHPDTPILLVSPI 102 (178)
T ss_dssp CS--HHHHHHHHHS--SEEEEEESHHCC-TTTHHHHHHHHHHHHHTT-SSS-EEEEE--
T ss_pred cccCHHHHHHHhcCCCCEEEEEeecCCC-HHHHHHHHHHHHHHHHHhCCCCCEEEEecC
Confidence 3567788899889999999986554421 1112 112223333333 3999999743
No 388
>PF00162 PGK: Phosphoglycerate kinase; InterPro: IPR001576 Phosphoglycerate kinase (2.7.2.3 from EC) (PGK) is an enzyme that catalyses the formation of ATP to ADP and vice versa. In the second step of the second phase in glycolysis, 1,3-diphosphoglycerate is converted to 3-phosphoglycerate, forming one molecule of ATP. If the reverse were to occur, one molecule of ADP would be formed. This reaction is essential in most cells for the generation of ATP in aerobes, for fermentation in anaerobes and for carbon fixation in plants. PGK is found in all living organisms and its sequence has been highly conserved throughout evolution. The enzyme exists as a monomer containing two nearly equal-sized domains that correspond to the N- and C-termini of the protein (the last 15 C-terminal residues loop back into the N-terminal domain). 3-phosphoglycerate (3-PG) binds to the N-terminal, while the nucleotide substrates, MgATP or MgADP, bind to the C-terminal domain of the enzyme. This extended two-domain structure is associated with large-scale 'hinge-bending' conformational changes, similar to those found in hexokinase []. At the core of each domain is a 6-stranded parallel beta-sheet surrounded by alpha helices. Domain 1 has a parallel beta-sheet of six strands with an order of 342156, while domain 2 has a parallel beta-sheet of six strands with an order of 321456. Analysis of the reversible unfolding of yeast phosphoglycerate kinase leads to the conclusion that the two lobes are capable of folding independently, consistent with the presence of intermediates on the folding pathway with a single domain folded []. Phosphoglycerate kinase (PGK) deficiency is associated with haemolytic anaemia and mental disorders in man []. This group represents a phosphoglycerate kinase.; GO: 0004618 phosphoglycerate kinase activity, 0006096 glycolysis; PDB: 1PHP_A 1V6S_A 2IE8_A 1ZMR_A 16PK_A 13PK_B 2P9Q_A 2P9T_A 2PAA_B 3OZA_A ....
Probab=32.22 E-value=81 Score=22.04 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=31.5
Q ss_pred HHHHhcCCCEEEEcccCCC---CCC-ceecCcHHHHHhhhCCccEEEECC
Q 038513 21 QAVEQMHIDLLVVGSRGLG---KVK-RAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~---~~~-~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
++..+.++-+|+|.+.|+. ... .+-+-.+++++-+....||-.++.
T Consensus 41 ~~l~~~gakvVl~sH~GRPk~~~~~~~~SL~~va~~L~~~L~~~V~f~~d 90 (384)
T PF00162_consen 41 KYLLEKGAKVVLMSHLGRPKGKGYDDFFSLEPVAERLSKLLGKPVKFVDD 90 (384)
T ss_dssp HHHHHTTEEEEEE---SSTTTSSSTGGG-SHHHHHHHHHHHTSEEEEEST
T ss_pred HHHHhcCCeEEEEeccCCcccCCCCcccChHHHHHHHHHHhCCCeeeccc
Confidence 4455568889999988887 333 334677788888889999999885
No 389
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=32.19 E-value=39 Score=21.71 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=20.1
Q ss_pred CCEEEEcccCCCCCCceecCcH-HHHHhhhCCccEEEECCCC
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSV-SDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~-~~~vi~~~~~Pvlvv~~~~ 68 (81)
+|.||+|+-. -|++ +.++.+....-|||+..+.
T Consensus 1 yD~iIVGsG~--------~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGA--------GGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SH--------HHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCH--------HHHHHHHHHhhCCCCcEEEEEccc
Confidence 4788888652 2555 6666655447889987654
No 390
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=32.17 E-value=75 Score=20.75 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh--CCccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH--AVCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~--~~~Pvlvv~~~ 67 (81)
-.+.|++-|...+..++|+|.. +. --..++-++|. ..+||=+++..
T Consensus 65 ~sd~il~~ad~~dVa~LVVGdP----fg---ATTHsDlvlRAk~~~ipv~vIHNA 112 (272)
T KOG3123|consen 65 ESDKILDEADKEDVAFLVVGDP----FG---ATTHSDLVLRAKELGIPVEVIHNA 112 (272)
T ss_pred hHHHHhhhhhhcceEEEEecCc----cc---ccchhhhheehhhcCCCeEEEech
Confidence 4678999999999999999965 11 11223444443 34898888753
No 391
>PRK10015 oxidoreductase; Provisional
Probab=32.05 E-value=73 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=13.4
Q ss_pred eEEEEEecCCHHH-HHHHHHHhcCCCEEEEcc
Q 038513 5 NAQTLILDGDARD-VICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 5 ~~~~~~~~g~~~~-~I~~~a~~~~~dliVmG~ 35 (81)
++++.++-|-|+- ...-.+.+.+.+.+++-.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr 36 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIER 36 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 3444444443322 222233334566666643
No 392
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=31.92 E-value=1.6e+02 Score=19.71 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=26.2
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
++..+...|-..+.|.+||+. ++|.|++|+--+++.
T Consensus 236 ~~~leaSGGI~~~ni~~yA~t-GvD~Is~gal~~a~~ 271 (284)
T PRK06096 236 HCTLSLAGGINLNTLKNYADC-GIRLFITSAPYYAAP 271 (284)
T ss_pred CeEEEEECCCCHHHHHHHHhc-CCCEEEECccccCCC
Confidence 344555566778888899886 899999998755533
No 393
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=31.86 E-value=88 Score=18.08 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=19.4
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEE
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVV 33 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVm 33 (81)
.-.+.+..|+..++|.++++-.+++.+.|
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~~~ 141 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVVEM 141 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE-E
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEEEc
Confidence 44567788999999999999888887765
No 394
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=31.74 E-value=51 Score=17.83 Aligned_cols=50 Identities=12% Similarity=0.296 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..+.+.+..++.++.+|++...-...+ ....++......-|+++.=+..
T Consensus 29 e~~~~l~~l~~~~~~gIIii~e~~~~~~-----~~~l~~~~~~~~~P~iv~IP~~ 78 (95)
T PF01990_consen 29 EAEEALKELLKDEDVGIIIITEDLAEKI-----RDELDEYREESSLPLIVEIPSK 78 (95)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEHHHHTTH-----HHHHHHHHHTSSSSEEEEESTT
T ss_pred HHHHHHHHHhcCCCccEEEeeHHHHHHH-----HHHHHHHHhccCCceEEEcCCC
Confidence 5677788888888999999976633222 4445566666788988874443
No 395
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=31.68 E-value=27 Score=21.98 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=25.0
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..++|+.-++.+|.-...- =.-+..++++.++|+++|-..
T Consensus 96 ~~qI~~HklAV~h~GNvk~hI------i~K~r~ilr~vdIP~IiVcq~ 137 (194)
T TIGR03264 96 IEQINRHKLAVIHLGNVKSHI------IYKARLILKHVDIPAIIVCQA 137 (194)
T ss_pred HHHHhhcCEEEEEeCCHHHHH------HHHHHHHHhcCCCCEEEEeCC
Confidence 345566666666666432111 122457888999999977543
No 396
>CHL00199 infC translation initiation factor 3; Provisional
Probab=31.54 E-value=92 Score=19.52 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCcee
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAF 45 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~ 45 (81)
+..+-++.|++.+-||+.+......+..+.+
T Consensus 41 ~~~eAl~~A~~~~lDLVeVs~~a~PPVCKIm 71 (182)
T CHL00199 41 TSEQAIQLAANQGLDLVLVSEKSDPPVCRII 71 (182)
T ss_pred eHHHHHHHHHHcCCCEEEECCCCCCCeEEEe
Confidence 5677788999999999999988777776655
No 397
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=31.53 E-value=1.3e+02 Score=22.29 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=28.4
Q ss_pred HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 24 EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...++|++.+++||.. .|.++..++....-+.++..+
T Consensus 596 ~~l~~dvLk~~HHGS~-------~Sss~~fl~~v~P~~aiiS~g 632 (662)
T TIGR00361 596 PNIKADVLQVGHHGSK-------TSTSEELIQQVQPKVAIISAG 632 (662)
T ss_pred cCcCccEEEeCCCCCC-------CCChHHHHHhcCCCEEEEECC
Confidence 3457999999999764 456788888888888887544
No 398
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.45 E-value=1.3e+02 Score=18.70 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..++.....++|-|++......... . .-+.+....+|++++-.
T Consensus 46 ~~i~~~~~~~~Dgiii~~~~~~~~~-----~-~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 46 ADVEDLLTRGVNVLIINPVDPEGLV-----P-AVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHcCCCEEEEecCCccchH-----H-HHHHHHHCCCCEEEecC
Confidence 3455566678888888643211100 1 11334567899998864
No 399
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=31.26 E-value=2e+02 Score=20.71 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=25.7
Q ss_pred cCCCEEEEcccCCCCCCceecC---cHHHHHhhhCCccEEEECCCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLG---SVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~g---s~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++|++|+-.-+- .+.....+ ..+.++++....||++|-+..
T Consensus 316 ~~~DivIIEGagG-L~dg~~~~~~~~S~adlAk~l~~PVILV~~~~ 360 (476)
T PRK06278 316 SDYDYYIIEGVMG-AFTGALNKKNPYSGAEIAKALGFPVYIVSSCS 360 (476)
T ss_pred cCCCEEEEECCCC-cccccCCCCccccHHHHHHHhCCCEEEEEcCC
Confidence 3689998855431 11111111 134589999999999996543
No 400
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=31.22 E-value=71 Score=18.67 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
....|.++++++++|+|+=...
T Consensus 118 i~~~v~~~a~~~g~~~Vl~~~~ 139 (158)
T PF03938_consen 118 INKAVEEYAKENGYDLVLDKNA 139 (158)
T ss_dssp HHHHHHHHHHHTT-SEEEEGGG
T ss_pred HHHHHHHHHHHcCCeEEEeCCc
Confidence 4567888999999999987443
No 401
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=31.17 E-value=60 Score=22.06 Aligned_cols=24 Identities=8% Similarity=0.074 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
...+.+.|++.++|.|+.|++...
T Consensus 105 ~~~l~~~A~~~g~~~IATGH~a~d 128 (346)
T PRK00143 105 FKAFLEYARELGADYIATGHYARI 128 (346)
T ss_pred HHHHHHHHHHCCCCEEEeeeeccc
Confidence 356778999999999999998654
No 402
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=31.06 E-value=1.5e+02 Score=19.30 Aligned_cols=17 Identities=24% Similarity=0.669 Sum_probs=8.5
Q ss_pred HHHhcCCCEEEEcccCC
Q 038513 22 AVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~ 38 (81)
..+..++|.-++|..|-
T Consensus 174 ~l~~~~~d~afig~~gi 190 (269)
T PRK09802 174 SLQNYHFDMLFLGVDAI 190 (269)
T ss_pred HHHhccCCEEEEcCcee
Confidence 33444555555555543
No 403
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=31.05 E-value=49 Score=21.45 Aligned_cols=42 Identities=12% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCCEEEEcccCCCCCCcee--cCcHHHH-HhhhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAF--LGSVSDY-CAHHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~--~gs~~~~-vi~~~~~Pvlvv~~~~ 68 (81)
++|.+++|+..-..-...+ .|+..-. +.++..+||+++-+..
T Consensus 176 ~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~ 220 (282)
T PF01008_consen 176 DVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESY 220 (282)
T ss_dssp TESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GG
T ss_pred hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccc
Confidence 5999999998643333222 5666544 4566679999995543
No 404
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=31.03 E-value=67 Score=22.52 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
.++.+++.|++.+++.|.=|.+|++.-
T Consensus 93 Ia~~~v~~A~~~ga~~vaHG~TgkGND 119 (388)
T PF00764_consen 93 IAKKLVEVAREEGADAVAHGCTGKGND 119 (388)
T ss_dssp HHHHHHHHHHHHT-SEEE----TTSSH
T ss_pred HHHHHHHHHHHcCCeEEeccCCcCCCc
Confidence 578899999999999999999887643
No 405
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=30.92 E-value=1.1e+02 Score=17.72 Aligned_cols=34 Identities=9% Similarity=0.142 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcH
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSV 49 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~ 49 (81)
..+++.+.|+..+.|.=+- .+|.+....+..|++
T Consensus 42 ~a~~l~~LA~sINp~I~i~-r~G~s~~~clV~G~t 75 (131)
T PF14459_consen 42 QAQNLQSLARSINPRIEIR-RSGSSPMHCLVIGST 75 (131)
T ss_pred HHHHHHHHHHhcCCCeEEE-ecCCCceEEEEecCC
Confidence 5678888898888876442 223334444444444
No 406
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.86 E-value=1.2e+02 Score=18.71 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=29.0
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.++.+...++|-|++.......... .. +-+....+||+.+-..
T Consensus 47 ~i~~~i~~~~d~Iiv~~~~~~~~~~-----~l-~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 47 QIEQAISQGVDGIIVSPVDPDSLAP-----FL-EKAKAAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTTESEEEEESSSTTTTHH-----HH-HHHHHTTSEEEEESST
T ss_pred HHHHHHHhcCCEEEecCCCHHHHHH-----HH-HHHhhcCceEEEEecc
Confidence 4455666789999988775544332 22 4467778999998665
No 407
>PRK08349 hypothetical protein; Validated
Probab=30.63 E-value=73 Score=19.57 Aligned_cols=22 Identities=5% Similarity=0.052 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~ 37 (81)
......+|++.++|.|+.|.+.
T Consensus 94 ~~~a~~~A~~~g~~~I~tG~~~ 115 (198)
T PRK08349 94 YRKAERIAHEIGASAIITGDSL 115 (198)
T ss_pred HHHHHHHHHHcCCCEEEEecCC
Confidence 4455678999999999999653
No 408
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=30.38 E-value=88 Score=16.28 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+.-...+.++..++++|.+|.|.- |..+.+.+....+.|+..
T Consensus 39 ~~~~~~~~~~l~~~~v~~li~~~i----------G~~~~~~L~~~gI~v~~~ 80 (94)
T PF02579_consen 39 GGGGDKIAKFLAEEGVDVLICGGI----------GEGAFRALKEAGIKVYQG 80 (94)
T ss_dssp SCHSTHHHHHHHHTTESEEEESCS----------CHHHHHHHHHTTSEEEES
T ss_pred cccchhHHHHHHHcCCCEEEEeCC----------CHHHHHHHHHCCCEEEEc
Confidence 355666777777799999999864 777888888888888776
No 409
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=30.29 E-value=58 Score=24.54 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
-.+++.++++++++.|+|+|..
T Consensus 56 d~~ala~f~~e~~I~lVvvGPE 77 (788)
T KOG0237|consen 56 DFEALASFCKEHNINLVVVGPE 77 (788)
T ss_pred hHHHHHHHHHHcceeEEEECCc
Confidence 5688999999999999999965
No 410
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=30.16 E-value=61 Score=19.23 Aligned_cols=25 Identities=8% Similarity=0.222 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVK 42 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~ 42 (81)
-+.+++++.+++.+|-|-+..+.+.
T Consensus 73 l~v~~~~~~~a~~ivrGlR~~~Dfe 97 (140)
T PRK13964 73 LTAEIAKKLGANFLIRSARNNIDFQ 97 (140)
T ss_pred cHHHHHHHCCCeEEEEecCCCccHH
Confidence 3468999999999999999876654
No 411
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=30.13 E-value=1.7e+02 Score=19.59 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=26.3
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.|+..+...+....+ +|+||+=.... ...+.+...+++||+=.
T Consensus 79 kgEsl~Dt~~vls~y-~D~iviR~~~~---------~~~~~~a~~~~vPVINa 121 (302)
T PRK14805 79 KRESVADFAANLSCW-ADAIVARVFSH---------STIEQLAEHGSVPVINA 121 (302)
T ss_pred CCcCHHHHHHHHHHh-CCEEEEeCCCh---------hHHHHHHHhCCCCEEEC
Confidence 344444444444444 99999864322 35677888888996543
No 412
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.10 E-value=1.3e+02 Score=19.99 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=23.8
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
+..+...|-..+.|.+||+. ++|.|.+|+--+
T Consensus 232 ~~leaSGGI~~~ni~~yA~t-GvD~Is~galt~ 263 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKL-DVDVISLGALTH 263 (278)
T ss_pred EEEEEECCCCHHHHHHHHHc-CCCEEEeChhhc
Confidence 44455556667888888885 899999998765
No 413
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.09 E-value=1.1e+02 Score=22.00 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcH
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSV 49 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~ 49 (81)
..=++.++++.+|++++-+.|+.....-++.-.
T Consensus 172 k~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El 204 (451)
T COG0541 172 KAALEKAKEEGYDVVIVDTAGRLHIDEELMDEL 204 (451)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccccHHHHHHH
Confidence 455678899999999999999988877665433
No 414
>COG2257 Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]
Probab=30.03 E-value=49 Score=18.40 Aligned_cols=19 Identities=11% Similarity=0.337 Sum_probs=15.4
Q ss_pred cCCHHHHHHHHHHhcCCCE
Q 038513 12 DGDARDVICQAVEQMHIDL 30 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dl 30 (81)
.|..++.|++.|+++++-+
T Consensus 30 ~G~iAe~II~~Ake~~Vpi 48 (92)
T COG2257 30 KGEIAEKIIEKAKEHGVPI 48 (92)
T ss_pred chHHHHHHHHHHHHcCCCc
Confidence 3579999999999887643
No 415
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=30.02 E-value=1.2e+02 Score=17.86 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=23.0
Q ss_pred HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 24 EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+.++|||+...... .....-+.....|++++...
T Consensus 57 ~~l~PDlii~~~~~~---------~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 57 VALKPDLVIVSSSSL---------AELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred hccCCCEEEEcCCcC---------HHHHHHHHHcCCcEEEeCCC
Confidence 344899998854321 11345678888999988754
No 416
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=30.00 E-value=1.2e+02 Score=17.67 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=16.6
Q ss_pred ceEEEEEecCCHHHHHHHHHHh--cCCCEEEEcc
Q 038513 4 VNAQTLILDGDARDVICQAVEQ--MHIDLLVVGS 35 (81)
Q Consensus 4 v~~~~~~~~g~~~~~I~~~a~~--~~~dliVmG~ 35 (81)
.++......++-.+.|.+..++ .++|+||...
T Consensus 41 ~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttG 74 (144)
T TIGR00177 41 FNVSRLGIVPDDPEEIREILRKAVDEADVVLTTG 74 (144)
T ss_pred CeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECC
Confidence 3444444444444444443322 2799999863
No 417
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.87 E-value=1.5e+02 Score=18.89 Aligned_cols=53 Identities=9% Similarity=-0.078 Sum_probs=32.7
Q ss_pred ecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 11 LDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 11 ~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
..++|.+....+.+...+|.|.+---......+...-++..++.+.+..|+.+
T Consensus 29 ~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~v 81 (234)
T PRK13587 29 MSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEV 81 (234)
T ss_pred eCCCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEE
Confidence 34688775555665467888887654333212211224677888888889776
No 418
>PF02833 DHHA2: DHHA2 domain; InterPro: IPR004097 This domain is called DHHA2 since it is often associated with the DHH domain (IPR001667 from INTERPRO) and is diagnostic of DHH subfamily 2 members []. The domain is about 120 residues long and contains a conserved DXK motif at its amino terminus. It is present in inorganic pyrophosphatases and in exopolyphosphatase of Saccharomyces cerevisiae.; GO: 0016462 pyrophosphatase activity, 0005737 cytoplasm; PDB: 1WPP_A 1K20_A 1I74_A 2HAW_A 1WPN_A 1WPM_B 2IW4_B 1K23_D 2ENX_A 2EB0_A ....
Probab=29.86 E-value=92 Score=17.48 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCce
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRA 44 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~ 44 (81)
...+.+.++.++++.|++++-......-+..
T Consensus 53 ~~~~~l~~~~~~~~ld~l~lm~td~~~~r~~ 83 (127)
T PF02833_consen 53 ELLEELEEFCEERKLDLLFLMTTDIIFKRSL 83 (127)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEEETTTTEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEEEcCCcCceE
Confidence 3667788899999999998777644433333
No 419
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=29.84 E-value=70 Score=21.22 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCEEEEccc
Q 038513 16 RDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~ 36 (81)
.+.+.+..+++++|+||+...
T Consensus 149 e~~~~~~l~~~~~Dlivlagy 169 (280)
T TIGR00655 149 EKRQLELLKQYQVDLVVLAKY 169 (280)
T ss_pred HHHHHHHHHHhCCCEEEEeCc
Confidence 457888889999999999865
No 420
>PF00381 PTS-HPr: PTS HPr component phosphorylation site; InterPro: IPR005698 The histidine-containing phosphocarrier protein (HPr) is a central component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), which transfers metabolic carbohydrates across the cell membrane in many bacterial species [, ]. PTS catalyses the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is as follows: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to Enzyme I (EI) of the PTS, which in turn transfers it to the phosphoryl carrier protein (HPr) [, ]. Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease complex (enzymes EII/EIII). HPr [, ] is a small cytoplasmic protein of 70 to 90 amino acid residues. In some bacteria, HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also the EI domain. A conserved histidine in the N-terminal section of HPr serves as an acceptor for the phosphoryl group of EI. In the central part of HPr, there is a conserved serine which (in Gram-positive bacteria only) is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport. The overall architecture of the HPr domain has been described as an open faced beta-sandwich in which a beta-sheet is packed against three alpha-helices. Regulatory phosphorylation at the conserved Ser residue does not appear to induce large structural changes to the HPr domain, in particular in the region of the active site [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TXE_A 1QR5_A 1RZR_S 2NZU_L 2OEN_L 2NZV_L 1Y51_B 1Y4Y_A 1Y50_A 2HPR_A ....
Probab=29.83 E-value=65 Score=16.92 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEccc
Q 038513 14 DARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
.|+..+.+.++++++++.+.-..
T Consensus 17 Rpa~~lv~~a~~~~~~i~i~~~~ 39 (84)
T PF00381_consen 17 RPAAELVQIASKFDSDITIRKGG 39 (84)
T ss_dssp HHHHHHHHHHHTSSSEEEEEETT
T ss_pred HHHHHHHHHHhhCCCEEEEEeCc
Confidence 59999999999999999988543
No 421
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=29.75 E-value=50 Score=20.21 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.3
Q ss_pred cCCHHHHHHHHHHhcCCCE
Q 038513 12 DGDARDVICQAVEQMHIDL 30 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dl 30 (81)
.|...+.|++.|.++++||
T Consensus 59 ~g~vGdtlLd~ah~n~idl 77 (159)
T KOG3309|consen 59 KGKVGDTLLDAAHENNLDL 77 (159)
T ss_pred eeecchHHHHHHHHcCCCc
Confidence 4678899999999998886
No 422
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=29.61 E-value=1.7e+02 Score=20.84 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
|+..+...+....+ +|+||+=+.. -...+.+.+.+.+||+=.
T Consensus 169 GESi~DTarvLs~y-~D~IviR~~~---------~~~~~e~A~~s~vPVINA 210 (429)
T PRK11891 169 GESIYDTSRVMSGY-VDALVIRHPE---------QGSVAEFARATNLPVING 210 (429)
T ss_pred CCCHHHHHHHHHHh-CCEEEEeCCc---------hhHHHHHHHhCCCCEEEC
Confidence 44444444444444 9999885432 236778888899997643
No 423
>PRK07695 transcriptional regulator TenI; Provisional
Probab=29.58 E-value=1.4e+02 Score=18.30 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=27.8
Q ss_pred HHHHhcCCCEEEEcccCCCCCCce--ecC-cHHHHHhhhCCccEEEEC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRA--FLG-SVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~--~~g-s~~~~vi~~~~~Pvlvv~ 65 (81)
..+.+.++|.++.|.-..+..... ..| .....+....++|++..-
T Consensus 109 ~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~G 156 (201)
T PRK07695 109 IQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIG 156 (201)
T ss_pred HHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEc
Confidence 446677999999886433321111 112 345667777789999874
No 424
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=29.54 E-value=78 Score=25.65 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
-|.+.|++.++++++|+|.|..--......+ ..+.+.+-+.. .+||++--..
T Consensus 789 vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m--~~~i~~L~~~g~~v~v~vGGa~ 841 (1229)
T PRK09490 789 VPAEKILETAKEENADIIGLSGLITPSLDEM--VHVAKEMERQGFTIPLLIGGAT 841 (1229)
T ss_pred CCHHHHHHHHHHhCCCEEEEcCcchhhHHHH--HHHHHHHHhcCCCCeEEEEeec
Confidence 5889999999999999999987654444332 34455554443 4777776543
No 425
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=29.50 E-value=68 Score=19.08 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCCCEEEEc
Q 038513 16 RDVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG 34 (81)
.+.+.++.+++++|+||--
T Consensus 78 ~~~l~~~l~~~~PD~IIsT 96 (169)
T PF06925_consen 78 ARRLIRLLREFQPDLIIST 96 (169)
T ss_pred HHHHHHHHhhcCCCEEEEC
Confidence 4578888999999988763
No 426
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=29.50 E-value=1.7e+02 Score=19.15 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=31.8
Q ss_pred cceEEEEEec-CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCCCC
Q 038513 3 QVNAQTLILD-GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPPKE 69 (81)
Q Consensus 3 ~v~~~~~~~~-g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~~~ 69 (81)
+++++..... ..-++++.+.+.+.+.|.||...- .+.+ ..+...+... .++|+-++|.+..
T Consensus 27 g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GG-DGTi-----~ev~ngl~~~~~~~~~~lgiiP~GTg 91 (293)
T TIGR03702 27 GIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGG-DGTL-----REVATALAQIRDDAAPALGLLPLGTA 91 (293)
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcC-ChHH-----HHHHHHHHhhCCCCCCcEEEEcCCch
Confidence 3444444332 233455665555567787764332 2222 2344455432 3468999997754
No 427
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=29.20 E-value=2.1e+02 Score=20.15 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=42.8
Q ss_pred ccceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCC-CCCceecC----------cHHHHHhhhCCccEEEEC
Q 038513 2 VQVNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLG-KVKRAFLG----------SVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 2 ~~v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~-~~~~~~~g----------s~~~~vi~~~~~Pvlvv~ 65 (81)
+++.+-.....| ...+.+++..++.+.|-+=++-+... ...+.+.| .+++.++. +.+.||+.|
T Consensus 188 ~~v~vVSmQTng~~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~-a~idvlIaP 262 (414)
T COG2100 188 KGVEVVSMQTNGVLLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIAN-AGIDVLIAP 262 (414)
T ss_pred CCceEEEEeeCceeccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHh-CCCCEEEee
Confidence 455555555555 46677777777778888888877655 34455666 35566666 999999987
No 428
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=29.16 E-value=1.7e+02 Score=19.57 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
|+..+...+....+ +|.||+=+.. -...+.+...+.+||+
T Consensus 82 gEsi~Dta~vls~y-~D~iviR~~~---------~~~~~~~a~~s~vPVI 121 (301)
T TIGR00670 82 GETLADTIKTLSGY-SDAIVIRHPL---------EGAARLAAEVSEVPVI 121 (301)
T ss_pred CcCHHHHHHHHHHh-CCEEEEECCc---------hhHHHHHHhhCCCCEE
Confidence 44444444444444 9999986432 3456778888899954
No 429
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=29.14 E-value=78 Score=21.74 Aligned_cols=20 Identities=10% Similarity=0.185 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCCCEEE-Ecc
Q 038513 16 RDVICQAVEQMHIDLLV-VGS 35 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliV-mG~ 35 (81)
.+.+.+.+++.++|.|| +|.
T Consensus 77 v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 77 VAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 55677788899999998 664
No 430
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=29.12 E-value=1.5e+02 Score=18.55 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCCEEEEc
Q 038513 17 DVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG 34 (81)
+.|.+.+++.++|+|+..
T Consensus 56 ~aL~~a~~~~~~DlIITT 73 (193)
T PRK09417 56 QTLIELVDEMGCDLVLTT 73 (193)
T ss_pred HHHHHHhhcCCCCEEEEC
Confidence 444444443478888876
No 431
>PLN02623 pyruvate kinase
Probab=28.78 E-value=1.2e+02 Score=22.57 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+......|+..++. ||+=++ -|+++..+.+.=| ||++.+-+..
T Consensus 465 ia~sA~~~A~~l~a~-Ivv~T~---------sG~tA~~lSr~RP~~pI~avT~~~ 509 (581)
T PLN02623 465 FAFHATMMANTLGTS-IIVFTR---------TGFMAILLSHYRPSGTIFAFTNEK 509 (581)
T ss_pred HHHHHHHHHHhcCCc-EEEECC---------CcHHHHHHHhhCCCCCEEEECCCH
Confidence 334445667788888 555433 2788888888855 9999997553
No 432
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=28.77 E-value=1.6e+02 Score=20.14 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=21.7
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
.+....+ +|+||+=... -+..+.+...+++||+
T Consensus 95 ~rvls~y-~D~iviR~~~---------~~~~~~~a~~~~vPVI 127 (331)
T PRK02102 95 ARVLGRM-YDGIEYRGFK---------QEIVEELAKYSGVPVW 127 (331)
T ss_pred HHHHhhc-CCEEEEECCc---------hHHHHHHHHhCCCCEE
Confidence 3333444 9999885432 3457788888999964
No 433
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=28.71 E-value=58 Score=21.53 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=25.6
Q ss_pred CCCEEEEcccCCCCCC-ceecCcHHHHHhhhCCc---cEEEEC
Q 038513 27 HIDLLVVGSRGLGKVK-RAFLGSVSDYCAHHAVC---PILIVK 65 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~-~~~~gs~~~~vi~~~~~---Pvlvv~ 65 (81)
++||+|||+-.+.+-. --..|...++++++.-- .++++-
T Consensus 98 ~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivD 140 (255)
T COG3640 98 DIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVD 140 (255)
T ss_pred CccEEEeccccCCCCcccchHHHHHHHHHHHHhcccCcEEEEe
Confidence 6999999988644322 23467778888887653 355554
No 434
>PRK13856 two-component response regulator VirG; Provisional
Probab=28.71 E-value=1.4e+02 Score=18.22 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+...+......+|++++...-... ..+ .....+-....+|++++-.
T Consensus 35 ~~~~~~~~~~~~dlvi~d~~l~~~-~g~---~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 35 QQFNRVLASETVDVVVVDLNLGRE-DGL---EIVRSLATKSDVPIIIISG 80 (241)
T ss_pred HHHHHHHhhCCCCEEEEeCCCCCC-CHH---HHHHHHHhcCCCcEEEEEC
Confidence 344455666789999997653221 111 1233343345689988854
No 435
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.67 E-value=1.3e+02 Score=19.35 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=31.6
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcH
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSV 49 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~ 49 (81)
|..+-..+..|.+.+.|..+++ ..|++.+=+-..+.-.+-|+.+-
T Consensus 112 Gmk~G~alkPgT~Ve~~~~~~~--~~D~vLvMtVePGFGGQkFme~m 156 (224)
T KOG3111|consen 112 GMKVGLALKPGTPVEDLEPLAE--HVDMVLVMTVEPGFGGQKFMEDM 156 (224)
T ss_pred CCeeeEEeCCCCcHHHHHHhhc--cccEEEEEEecCCCchhhhHHHH
Confidence 5566667778899999999888 78887776665555445454444
No 436
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.63 E-value=1.4e+02 Score=19.73 Aligned_cols=30 Identities=13% Similarity=-0.041 Sum_probs=19.5
Q ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
.+...|-..+.+.++++. ++|.|++|+--+
T Consensus 232 ieAsGgIt~~ni~~ya~~-GvD~IsvG~l~~ 261 (273)
T PRK05848 232 LEASGNITLENINAYAKS-GVDAISSGSLIH 261 (273)
T ss_pred EEEECCCCHHHHHHHHHc-CCCEEEeChhhc
Confidence 333334455677777664 888888887655
No 437
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=28.58 E-value=65 Score=22.57 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
-.+.|.+.++++++|=+|.=...--.... +-....++.++...+||+-+-...
T Consensus 307 r~k~i~~mvkE~~vDGvv~~~l~fC~p~~-~e~~~lk~~~kE~~iPvi~~e~D~ 359 (379)
T COG1775 307 RVKYISRMVKEYNVDGVVLYTLRFCKPYS-VEYPELKRRLKEEGIPVIAIEGDY 359 (379)
T ss_pred HHHHHHHHHHHcCCCeEeehhhhccCccc-cccHHHHHHHHhcCCcEEEecccc
Confidence 56789999999999999987664332221 224567888898899999886544
No 438
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=28.52 E-value=91 Score=22.32 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=33.1
Q ss_pred cC-CHHHHHHHH---HHhc-CCCEEEEcccCCCCCCce-ecCcHHHHHhhhCCccEEEECCCCC
Q 038513 12 DG-DARDVICQA---VEQM-HIDLLVVGSRGLGKVKRA-FLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 12 ~g-~~~~~I~~~---a~~~-~~dliVmG~~~~~~~~~~-~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
.| +...+|.+. +++. ++|+|++|..|-|--.-| |..-..-+=+..+.+||+--=..+.
T Consensus 173 QG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~iPvISAVGHEt 236 (440)
T COG1570 173 QGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASRIPVISAVGHET 236 (440)
T ss_pred cCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCCCCeEeecccCC
Confidence 45 345555543 3333 499999998876622211 2233344566678899886644433
No 439
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=28.51 E-value=86 Score=18.49 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
..+.++|++++++.|+.|.+...
T Consensus 66 ~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 66 SIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HHHHHHHHHCCCCEEEEeeccCc
Confidence 45677889999999999998754
No 440
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.47 E-value=1.5e+02 Score=20.02 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=24.3
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
+..+...|-..+.|.+||.. ++|.|++|+--+
T Consensus 242 ~~leaSGGI~~~ni~~yA~t-GVD~Is~galth 273 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGL-AIDYVSSGSLTH 273 (290)
T ss_pred eEEEEECCCCHHHHHHHHhc-CCCEEEeCcccc
Confidence 34445556677888899875 899999998766
No 441
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=28.47 E-value=1.7e+02 Score=18.86 Aligned_cols=39 Identities=10% Similarity=-0.018 Sum_probs=18.8
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.++.++++|..=+. ....+.|..+.+.+++......++-
T Consensus 134 ~~~~villGG~~~~-~~~~~~G~~~~~~l~~~~~D~afig 172 (252)
T PRK10681 134 PHCRAILCGGEFHA-SNAIFKPLDFQQTLDNICPDIAFYS 172 (252)
T ss_pred CCCEEEEECcEEec-CcceeeCHHHHHHHHhhCCCEEEEe
Confidence 34555555544322 2233445555555555555555553
No 442
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.45 E-value=1.4e+02 Score=20.03 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=24.2
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
+..+...|-..+.|.+||+. ++|.|.+|+--++
T Consensus 247 v~ieaSGGI~~~ni~~yA~t-GvD~Is~galt~s 279 (289)
T PRK07896 247 VLLESSGGLTLDTAAAYAET-GVDYLAVGALTHS 279 (289)
T ss_pred EEEEEECCCCHHHHHHHHhc-CCCEEEeChhhcC
Confidence 44455556667888898885 8999999987653
No 443
>PF11684 DUF3280: Protein of unknown function (DUF2380); InterPro: IPR021698 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.44 E-value=72 Score=19.02 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCEEEEcccCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~ 38 (81)
....++|++.++|++++|...+
T Consensus 70 gC~~~~Ar~~GAd~~lvG~VqK 91 (140)
T PF11684_consen 70 GCEARIARELGADYVLVGEVQK 91 (140)
T ss_pred CHHHHHHHHcCCCEEEEEEEec
Confidence 5667889999999999998754
No 444
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=28.40 E-value=1.3e+02 Score=21.12 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCC--CCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGK--VKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~--~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+|.. .-+.++-+|+|.+.|+.. -..+.+-.+++++-+....||..++.
T Consensus 40 pTI~~-l~~~gakvvl~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~fv~d 90 (389)
T PRK00073 40 PTIKY-LLEKGAKVILLSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKFVDD 90 (389)
T ss_pred HHHHH-HHHCCCeEEEEEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEECCC
Confidence 34444 445689999999888762 11355677888888889999988764
No 445
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=28.31 E-value=1e+02 Score=19.62 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEccc
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
.|-...+-...+.+.++|.+|+|+.
T Consensus 179 dGGI~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 179 DGGINLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEchH
Confidence 4433333334455569999999954
No 446
>PRK14057 epimerase; Provisional
Probab=28.29 E-value=1.8e+02 Score=19.19 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=32.8
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHh
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCA 54 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi 54 (81)
.+-..+-.+.|.+.+..+.. .+|+|.+=+-..+.-.+.|..+..++|-
T Consensus 134 kaGlAlnP~Tp~e~i~~~l~--~vD~VLvMtV~PGfgGQ~Fi~~~l~KI~ 181 (254)
T PRK14057 134 IRGISLCPATPLDVIIPILS--DVEVIQLLAVNPGYGSKMRSSDLHERVA 181 (254)
T ss_pred eeEEEECCCCCHHHHHHHHH--hCCEEEEEEECCCCCchhccHHHHHHHH
Confidence 34445556788899998888 6887777666666556666666665554
No 447
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=28.25 E-value=98 Score=17.85 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=18.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
..+.+.|++.+++.|+.|.+...
T Consensus 92 ~~~~~~A~~~g~~~il~G~~~de 114 (154)
T cd01996 92 TSLYKVALKFGIPLIITGENPAQ 114 (154)
T ss_pred HHHHHHHHHhCcCEEEeCcCHHH
Confidence 35667899999999999987543
No 448
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=28.22 E-value=1.2e+02 Score=16.94 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
++|+|++|+... ..++.....+-+++..+.|-+.+.
T Consensus 53 ~pe~liiGtG~~----~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 53 KPEVLIIGTGKR----QLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp S-SEEEEEETTS-----SECTHHHHHHHHTTT-EEEEE-H
T ss_pred CCcEEEEccCCc----cccCCHHHHHHHHHcCCeEEEECH
Confidence 899999998543 334566677777888888887753
No 449
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=28.19 E-value=1e+02 Score=19.72 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=18.1
Q ss_pred CCHHHHHHH---HHHhcCCCEEEEcccCC
Q 038513 13 GDARDVICQ---AVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 13 g~~~~~I~~---~a~~~~~dliVmG~~~~ 38 (81)
.++.+++.+ ..++.++|+||+=+|..
T Consensus 154 ~d~~~~~~~~v~~~~~~~~D~iVvl~H~g 182 (257)
T cd07406 154 RDYVETARELVDELREQGADLIIALTHMR 182 (257)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 466666554 44667899999988753
No 450
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=28.18 E-value=2.6e+02 Score=20.99 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=27.3
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++|++++-..+... ...+......++++....||++|-...
T Consensus 75 ~~~D~VLIEGa~~~~-~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 75 KDCDVVLVEGLDPTR-KHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred cCCCEEEEeCcCCCC-cCcccCchHHHHHHHhCCCEEEEECCC
Confidence 579999976653222 112222345689999999999996543
No 451
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=28.10 E-value=2.1e+02 Score=19.85 Aligned_cols=49 Identities=14% Similarity=0.183 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
.+.+.-.+.+.++|+|++..++.=. +-.+ .++-.+++.+. --+++++.+
T Consensus 211 ve~~v~~~~e~~~Dii~VEGQgsl~--HP~y-~vtl~il~gs~PDavvL~H~P 260 (339)
T COG3367 211 VESAVYEAEEKNPDIIFVEGQGSLT--HPAY-GVTLGILHGSAPDAVVLCHDP 260 (339)
T ss_pred HHHHHHHhhhcCCCEEEEecccccc--CCCc-ccchhhhcCCCCCeEEEEecC
Confidence 3444555566899999999886432 2222 33444555554 444444443
No 452
>PLN02282 phosphoglycerate kinase
Probab=28.02 E-value=1.4e+02 Score=21.17 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCC--CCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGK--VKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~--~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+|.... +.++-.|+|++.|+.. -..+-+..+++++-+....||..++.
T Consensus 47 pTI~~l~-~~gakvVl~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d 97 (401)
T PLN02282 47 PTIKYLM-GHGARVILCSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMAND 97 (401)
T ss_pred HHHHHHH-HCCCeEEEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCC
Confidence 3444444 4588899998888773 22445677888999999999999875
No 453
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.99 E-value=71 Score=20.89 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVK 42 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~ 42 (81)
...+.+.+.++.+++|.+|.|...+....
T Consensus 174 ~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~ 202 (237)
T COG2908 174 VNPAAVADEARRHGVDGVIHGHTHRPAIH 202 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEecCcccHhhc
Confidence 44567788899999999999998766443
No 454
>PF02610 Arabinose_Isome: L-arabinose isomerase; InterPro: IPR003762 The Escherichia coli araBAD operon consists of three genes encoding three enzymes that convert L-arabinose to D-xylulose-5 phosphate. L-arabinose isomerase (AraA) 5.3.1.4 from EC catalyses the conversion of L-arabinose to L-ribulose as the first step in the pathway of L-arabinose utilization as a carbon source [].; GO: 0008733 L-arabinose isomerase activity, 0008152 metabolic process; PDB: 4F2D_A 2AJT_C 2HXG_C.
Probab=27.96 E-value=77 Score=22.04 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=24.6
Q ss_pred HHHHHH-hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 19 ICQAVE-QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 19 I~~~a~-~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
++..|+ ..+||.|+.=-|.-++. +.--..++...+|+|.+.-...
T Consensus 63 ~~~~an~~~~c~gvi~wMhTfSpa------kmwI~gl~~l~kPllhl~tQ~~ 108 (359)
T PF02610_consen 63 VCKEANADEDCDGVITWMHTFSPA------KMWIPGLQRLQKPLLHLHTQPN 108 (359)
T ss_dssp HHHHHHH-TTEEEEEEEESS---T------HHHHHHHHH--S-EEEEE--SS
T ss_pred HHHHhhccCCccEEeehhhhhccH------HHHHHHHHHhCCCeEEeecccc
Confidence 334443 35888888866655543 3445889999999999975543
No 455
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=27.87 E-value=15 Score=19.86 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
.+.+..++.++||+|.-..+.+.... --|....+.+-...+|.+
T Consensus 51 ~i~~~i~~~~IdlVIn~~~~~~~~~~-~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKNGKIDLVINTPYPFSDQEH-TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHTTSEEEEEEE--THHHHHT-HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHcCCeEEEEEeCCCCccccc-CCcHHHHHHHHHcCCCCc
Confidence 48999999999988886654332211 124445666666666653
No 456
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.79 E-value=1.4e+02 Score=17.71 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=23.4
Q ss_pred HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 24 EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...++|+|+...... .......+....+|++.++.
T Consensus 66 l~l~PDlii~~~~~~--------~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 66 VALKPDLVILYGGFQ--------AQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred hccCCCEEEEecCCC--------chhHHHHHHHcCCCEEEeCC
Confidence 345899998753211 11255677889999999974
No 457
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=27.69 E-value=76 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
....+.+..+++++|++|+...
T Consensus 153 ~~~~~~~~l~~~~~Dlivlagy 174 (286)
T PRK13011 153 QEAQVLDVVEESGAELVVLARY 174 (286)
T ss_pred hHHHHHHHHHHhCcCEEEEeCh
Confidence 3456788888999999999865
No 458
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=27.69 E-value=1.6e+02 Score=21.80 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~ 70 (81)
...+.++++.....-+.|+.+..-+ +.-.-+...+++..+.||+.+.|.....
T Consensus 200 ~~v~~i~e~i~~~~~Pvil~~~~~~----r~~~~~~~~~l~~~~~~p~~vtp~gKg~ 252 (561)
T KOG1184|consen 200 EAVDAILELINKAKKPVILGDPKLR----RAKAESAFVELADATGFPVFVTPMGKGF 252 (561)
T ss_pred HHHHHHHHHhhhccCCeeecccccc----HHHHHHHHHHHHHhhCCCeeEeeccccc
Confidence 3566778888888889998887733 3334566889999999999999976543
No 459
>PRK04940 hypothetical protein; Provisional
Probab=27.66 E-value=1.3e+02 Score=18.77 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=24.7
Q ss_pred CEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 29 DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 29 dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++++|+. +. |=-+.++..+..||.+++.+.-
T Consensus 61 ~~~liGSS----LG----GyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 61 RPLICGVG----LG----GYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CcEEEEeC----hH----HHHHHHHHHHHCCCEEEECCCC
Confidence 57888876 32 3348899999999999998754
No 460
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=27.63 E-value=1.7e+02 Score=19.74 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=22.7
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
+..+...|-..+.|.+||+. ++|.|++|+--++
T Consensus 253 ~~ieaSGGI~~~ni~~yA~t-GVD~Is~galths 285 (296)
T PRK09016 253 ALLEVSGNVTLETLREFAET-GVDFISVGALTKH 285 (296)
T ss_pred eEEEEECCCCHHHHHHHHhc-CCCEEEeCccccC
Confidence 33444445566788888775 8899988886555
No 461
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=27.59 E-value=92 Score=18.59 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~ 39 (81)
.+..+|++.+++.|+.|.+...
T Consensus 94 ~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 94 IAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred HHHHHHHHcCCCEEEEccCccc
Confidence 3556889999999999998543
No 462
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=27.59 E-value=56 Score=21.53 Aligned_cols=30 Identities=10% Similarity=0.204 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCcee
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAF 45 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~ 45 (81)
.+++.+++++++.++.+.|..+.+.....+
T Consensus 195 S~~V~dlIk~~~P~ivl~Ghihe~~~~e~l 224 (255)
T PF14582_consen 195 SAAVRDLIKTYNPDIVLCGHIHESHGKESL 224 (255)
T ss_dssp BHHHHHHHHHH--SEEEE-SSS-EE--EEE
T ss_pred HHHHHHHHHhcCCcEEEecccccchhhHHh
Confidence 467889999999999999888766544443
No 463
>PRK08227 autoinducer 2 aldolase; Validated
Probab=27.54 E-value=1.9e+02 Score=19.16 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=16.4
Q ss_pred CcHHHHHhhhCCccEEEECCCC
Q 038513 47 GSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 47 gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|..-++++..+++||++.-.+.
T Consensus 181 ~~~f~~vv~a~~vPVviaGG~k 202 (264)
T PRK08227 181 EEGFERITAGCPVPIVIAGGKK 202 (264)
T ss_pred HHHHHHHHHcCCCcEEEeCCCC
Confidence 4456788889999999875443
No 464
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=27.52 E-value=92 Score=22.09 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
-.+++.+.|+++++.|||.|..--+....+ .--..+.....+-++
T Consensus 154 DyD~~~k~a~e~kPK~ii~G~SaY~r~id~---~~~reIad~VGA~L~ 198 (413)
T COG0112 154 DYDEVEKLAKEVKPKLIIAGGSAYSRPIDF---KRFREIADEVGAYLM 198 (413)
T ss_pred CHHHHHHHHHHhCCCEEEECccccccccCH---HHHHHHHHHhCceEE
Confidence 468899999999999999999876544332 223455555555444
No 465
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.49 E-value=1.6e+02 Score=18.21 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
....+.+...++|-+++......... . .-..++...+|++.+..
T Consensus 45 ~~~~~~~~~~~vdgiii~~~~~~~~~-----~-~~~~~~~~~ipvV~~~~ 88 (267)
T cd06322 45 LSDVEDFITKKVDAIVLSPVDSKGIR-----A-AIAKAKKAGIPVITVDI 88 (267)
T ss_pred HHHHHHHHHcCCCEEEEcCCChhhhH-----H-HHHHHHHCCCCEEEEcc
Confidence 34455555678998888543211111 1 12335667899999964
No 466
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=27.47 E-value=88 Score=19.96 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
-.++|.+..++.++|++|+...
T Consensus 67 ~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 67 FDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEcch
Confidence 5678999999999999999764
No 467
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=27.47 E-value=1.9e+02 Score=19.81 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
|+..+...+....+ +|.||+=... -...+.+...+.+||+=
T Consensus 87 gEsl~Dtarvls~y-~D~Iv~R~~~---------~~~~~~~a~~~~vPVIN 127 (336)
T PRK03515 87 KESIKDTARVLGRM-YDGIQYRGYG---------QEIVETLAEYAGVPVWN 127 (336)
T ss_pred CCCHHHHHHHHHHh-CcEEEEEeCC---------hHHHHHHHHhCCCCEEE
Confidence 43333333433443 8999986432 23577888888999863
No 468
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=27.40 E-value=1.5e+02 Score=17.90 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....+.....++|.+|......+.. . .-..+....+|++.+...
T Consensus 45 ~~~~~~~~~~~~d~ii~~~~~~~~~------~-~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 45 LSALENLIARGVDGIIIAPSDLTAP------T-IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHHcCCCEEEEecCCCcch------h-HHHHhhhcCCCEEEeccC
Confidence 3444444455899998865432211 1 246667889999998654
No 469
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=27.38 E-value=1.7e+02 Score=18.61 Aligned_cols=54 Identities=6% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+.+.+.+++.++|.+++-.--........--....+.++....|+.+|+...
T Consensus 46 ~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~~~v~~V~GNH 99 (225)
T TIGR00024 46 IIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTFRDLILIRGNH 99 (225)
T ss_pred HHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcCCcEEEECCCC
Confidence 345566667778888776654322211110001123446667778999998554
No 470
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=27.33 E-value=2e+02 Score=19.32 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=21.9
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.+....+ +|+||+=... ....+.+...+++||+=.
T Consensus 92 ~~~l~~~-~D~iv~R~~~---------~~~~~~~a~~~~vPVINa 126 (304)
T PRK00779 92 ARVLSRY-VDAIMIRTFE---------HETLEELAEYSTVPVING 126 (304)
T ss_pred HHHHHHh-CCEEEEcCCC---------hhHHHHHHHhCCCCEEeC
Confidence 3333344 8988885432 235677788888986543
No 471
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=27.29 E-value=1.2e+02 Score=21.46 Aligned_cols=50 Identities=6% Similarity=0.155 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHhc-CCCEEEEcccCCCCCCceecCcHHHHHhhhC------------CccEEEECCC
Q 038513 14 DARDVICQAVEQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA------------VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~------------~~Pvlvv~~~ 67 (81)
+..++|.+..+.+ ++++|.+-+..-+.+ +|...+.+++.. .+|++-+..+
T Consensus 79 ~L~~ai~~~~~~~~~p~~i~v~ttc~~ei----iGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tp 141 (461)
T TIGR02931 79 RVEEAVDVLLTRYPDVKVVPIITTCSTEI----IGDDVDGLISKLNEELLKEKFPDREVHLIPIHTP 141 (461)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchHHh----hhcCHHHHHHHHHhhhcccccCCCCCeEEEeeCC
Confidence 4677777877877 599998877765543 477777776654 5788888744
No 472
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=27.19 E-value=1.1e+02 Score=16.55 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=12.6
Q ss_pred CcHHHHHhhhCCccEEEECCC
Q 038513 47 GSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 47 gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.....++++...+|++.++..
T Consensus 74 ~~~v~~la~~~~i~vi~t~~d 94 (105)
T PF07085_consen 74 SEEVLELAKELGIPVISTPYD 94 (105)
T ss_dssp -HHHHHHHHHHT-EEEE-SS-
T ss_pred CHHHHHHHHHCCCEEEEECCC
Confidence 345567777888999988754
No 473
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=27.13 E-value=1.4e+02 Score=18.74 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCC----CCCcee---cCcHHHHHhhhCCccEEEECCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLG----KVKRAF---LGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~----~~~~~~---~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
..+.|.+.+...++++||+-.-..- ...... +-....++.+...|.++++....+
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 3455666666779999999853211 011100 112223445667899999976543
No 474
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.11 E-value=42 Score=23.72 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=14.7
Q ss_pred HHHHHHhcCCCEEEEcccC
Q 038513 19 ICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~ 37 (81)
+.+.-..+++||||+|..+
T Consensus 11 l~~~~~sydyDLIviGgGS 29 (503)
T KOG4716|consen 11 LARLFSSYDYDLIVIGGGS 29 (503)
T ss_pred hhhhcccCCccEEEEcCCc
Confidence 4556667899999999764
No 475
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=27.08 E-value=85 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEccc
Q 038513 14 DARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
.-.+.|+++++++++|+++.|..
T Consensus 49 ~d~~~l~~~~~~~~id~vi~~~e 71 (420)
T PRK00885 49 TDIEALVAFAKEEGIDLTVVGPE 71 (420)
T ss_pred CCHHHHHHHHHHhCCCEEEECCc
Confidence 44678999999999999998653
No 476
>TIGR01003 PTS_HPr_family Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein.
Probab=26.98 E-value=1.1e+02 Score=16.15 Aligned_cols=30 Identities=3% Similarity=0.132 Sum_probs=22.4
Q ss_pred eEEEEEecC---CHHHHHHHHHHhcCCCEEEEc
Q 038513 5 NAQTLILDG---DARDVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 5 ~~~~~~~~g---~~~~~I~~~a~~~~~dliVmG 34 (81)
.+...-..| .|+..+.+.+..+++|..+..
T Consensus 5 ~~~i~~~~GlHaRpA~~lv~~a~~f~s~I~i~~ 37 (82)
T TIGR01003 5 EVTIINKVGLHARPAAILVKLASGFDSEITLTK 37 (82)
T ss_pred EEEEcCCCcccHHHHHHHHHHHHhCCCEEEEEE
Confidence 333333445 699999999999999998864
No 477
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=26.98 E-value=2e+02 Score=19.19 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCEEEEcccCCCCCCcee--cCcHHHHHh-hhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAF--LGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~--~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
++|.+++|+..-....... .|+-.-.++ +.-.+|++|+-+..
T Consensus 177 ~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~ 221 (275)
T PRK08335 177 EATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETF 221 (275)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECccc
Confidence 4999999998754433332 566654444 66679999995543
No 478
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=26.96 E-value=73 Score=22.21 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEecCCHHHHHHHHHHhcCCCEEEEcc
Q 038513 9 LILDGDARDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 9 ~~~~g~~~~~I~~~a~~~~~dliVmG~ 35 (81)
.+..+.-...+.+.+++.++||++=|+
T Consensus 342 ~v~~~~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 342 RIVEGQDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred EEEECCCHHHHHHHHHHcCCCEEEccC
Confidence 455665567788888889999999775
No 479
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=26.94 E-value=1.1e+02 Score=19.64 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=26.8
Q ss_pred CHHHHHHHH----HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEE
Q 038513 14 DARDVICQA----VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~----a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv 64 (81)
++.+++.++ .++.++|+||+=+|.--.... -.....++++..+ +++++-
T Consensus 154 d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~--~~~~~~~la~~~~giDvIig 207 (257)
T cd07408 154 DPIEEAKKVIVAALKAKGADVIVALGHLGVDRTS--SPWTSTELAANVTGIDLIID 207 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCC--CCccHHHHHHhCCCceEEEe
Confidence 566665444 556789999998874322110 1123456666654 444443
No 480
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=26.89 E-value=2e+02 Score=19.70 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=25.9
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
.|+..+...+....+ +|.||+=+.. -...+.+...+.+||+=
T Consensus 86 kgEsl~Dtarvls~y-~D~IviR~~~---------~~~~~~~a~~~~vPVIN 127 (338)
T PRK08192 86 KGESLYDTARVLSTY-SDVIAMRHPD---------AGSVKEFAEGSRVPVIN 127 (338)
T ss_pred CCCCHHHHHHHHHHc-CCEEEEeCCc---------hhHHHHHHHhCCCCEEE
Confidence 354444444555554 9999985432 23456778889999543
No 481
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=26.87 E-value=1.3e+02 Score=16.99 Aligned_cols=59 Identities=7% Similarity=-0.085 Sum_probs=34.9
Q ss_pred ccceEEEEEec--CCHHHHHHHHHHhcCCCEEEEccc--CCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 2 VQVNAQTLILD--GDARDVICQAVEQMHIDLLVVGSR--GLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 2 ~~v~~~~~~~~--g~~~~~I~~~a~~~~~dliVmG~~--~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
.|++++.. .. ..-...|.+..++.++|+++--.. +..+.. --|..-.+..-...+|.+-
T Consensus 44 ~Gi~v~~v-k~~~~~g~~~i~~~i~~g~i~~VInt~~~~~~~~~~--~dg~~iRr~a~~~~Ip~~T 106 (115)
T cd01422 44 TGLTVNRM-KSGPLGGDQQIGALIAEGEIDAVIFFRDPLTAQPHE--PDVKALLRLCDVYNIPLAT 106 (115)
T ss_pred hCCcEEEE-ecCCCCchhHHHHHHHcCceeEEEEcCCCCCCCccc--ccHHHHHHHHHHcCCCEEE
Confidence 35666655 32 112266999999999999987655 332211 1244455666666677653
No 482
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=26.83 E-value=1.8e+02 Score=18.83 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+++.+.+.+.-.....++|++--+.-+..+. +--+...+++..+.-||++-
T Consensus 137 ed~le~Vk~l~~~~~~~lIvLDi~aVGt~~G-~~~E~l~~~~~~s~~pVllG 187 (229)
T COG1411 137 EDFLETVKDLNYRRDPGLIVLDIGAVGTKSG-PDYELLTKVLELSEHPVLLG 187 (229)
T ss_pred hhHHHHHHHHhccCCCCeEEEEccccccccC-CCHHHHHHHHHhccCceeec
Confidence 3566666666666789999986665443322 22355678888899999875
No 483
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=26.76 E-value=1.1e+02 Score=16.21 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...+.+...+.++|.++++.- |..+...+....+-++....
T Consensus 52 ~~~~~~~l~~~~v~~vi~~~i----------G~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 52 GGKAAEFLADEGVDVVIVGGI----------GPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred chHHHHHHHHcCCCEEEeCCC----------CcCHHHHHHHCCCEEEEcCC
Confidence 466777777789999999853 56677777888877776654
No 484
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=26.68 E-value=2e+02 Score=19.15 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=34.8
Q ss_pred cceEEEEEecCC-HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDGD-ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g~-~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.+.+....... -+..+++.+...+.|.|+.+.-. +. +..++.-+...-.-|+-++|.++
T Consensus 33 g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGD-GT-----v~evingl~~~~~~~LgilP~GT 93 (301)
T COG1597 33 GHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGD-GT-----VNEVANGLAGTDDPPLGILPGGT 93 (301)
T ss_pred CCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCc-ch-----HHHHHHHHhcCCCCceEEecCCc
Confidence 344445554443 56667776666799999987552 11 23444444444444477888665
No 485
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=26.68 E-value=90 Score=19.56 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=20.9
Q ss_pred CCCEE-EEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 27 HIDLL-VVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dli-VmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
++|++ |||+...-... -+.. ...+....|++++....
T Consensus 155 ~aDlllviGTSl~V~pa----~~l~-~~~~~~g~~vi~iN~~~ 192 (206)
T cd01410 155 RADLFLCLGTSLQVTPA----ANLP-LKAARAGGRLVIVNLQP 192 (206)
T ss_pred cCCEEEEECcCceehhH----HHHH-HHHHhcCCeEEEECCCC
Confidence 67865 56665432211 1112 23456678999997654
No 486
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=26.67 E-value=2e+02 Score=19.19 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....+.+.+.++|+|=..-.+.. ..-++++..+++||++--.+
T Consensus 169 ~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~vpVviaGG~ 211 (265)
T COG1830 169 GYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACGVPVVIAGGP 211 (265)
T ss_pred HHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCCCCEEEeCCC
Confidence 34456788888998866555432 33468999999999998544
No 487
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.64 E-value=1e+02 Score=16.98 Aligned_cols=27 Identities=0% Similarity=-0.028 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVK 42 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~ 42 (81)
....++.+++.++..|.+.....+++.
T Consensus 63 ~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 63 LLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 445667778888888888776665554
No 488
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=26.55 E-value=1.6e+02 Score=21.36 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+.+..+.++..++..||.-++. |+++..+-+.-+ +|++.+.+..
T Consensus 363 ia~aa~~~a~~l~~k~iv~~T~s---------G~ta~~isk~Rp~~pIia~t~~~ 408 (477)
T COG0469 363 IALAAVDIAEKLDAKAIVTLTES---------GRTARLLSKYRPEAPIIALTPNE 408 (477)
T ss_pred HHHHHHHHHHhcCCcEEEEEcCC---------CHHHHHHhcCCCCCcEEEECCCH
Confidence 45666778888899999987763 777877777766 8888886553
No 489
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=26.50 E-value=2.3e+02 Score=22.55 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=36.6
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
|++++......+-...|.+..++.++|+++--..+...... |-..++..-...+|++-
T Consensus 980 gi~~~~v~~~~~~~~~~~~~~~~~~~~~vin~~~~~~~~~~---~~~irr~a~~~~ip~~t 1037 (1068)
T PRK12815 980 GITTGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASED---AIKIRDEALSTHIPVFT 1037 (1068)
T ss_pred CCeEEEEeeccCCCccHHHHHHcCCeEEEEECCCCcccccc---cHHHHHHHHHcCCCEEe
Confidence 45554433321112458899999999999987655443322 55677777777888874
No 490
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=26.33 E-value=1.6e+02 Score=20.94 Aligned_cols=49 Identities=8% Similarity=-0.004 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCC-EEEEcccCCCCC---CceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHID-LLVVGSRGLGKV---KRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~d-liVmG~~~~~~~---~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+|.... +.++- +|+|.+.|+..- ..+.+-.+++++-+...+||..++.
T Consensus 46 pTI~~L~-~~gak~vvl~SHlGRP~g~~~~~~SL~~va~~L~~lL~~~V~fv~d 98 (417)
T PTZ00005 46 PTIKYLL-EQGAKSVVLMSHLGRPDGRRVEKYSLKPVVPKLEELLGKKVTFLND 98 (417)
T ss_pred HHHHHHH-HCCCCEEEEEecCCCCCCCcCcccCHHHHHHHHHHHHCCCeEECCC
Confidence 3444444 55785 888888777521 1455778899999999999998864
No 491
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=26.33 E-value=93 Score=19.99 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...|++..+..+.-|||.+-||....... .+.+. -++|+|+..+.
T Consensus 174 l~~l~~~~~~~~~~liiTaDHg~~~~~~~--~~Ht~-----~~VPll~~g~~ 218 (252)
T PF01676_consen 174 LGRLLEALDKEDDLLIITADHGNDETMGH--TSHTR-----EPVPLLIYGPG 218 (252)
T ss_dssp HHHHHHHHHHTTEEEEEEESSBSTTTSBS--SS-B------B-EEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEECCCCCccccCC--cCCCC-----ceEEEEEEeCC
Confidence 34566666566777888888877644332 12222 26999999775
No 492
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=26.31 E-value=1.8e+02 Score=18.59 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=31.7
Q ss_pred ceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHh
Q 038513 4 VNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCA 54 (81)
Q Consensus 4 v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi 54 (81)
.++-..+-.+.+.+.+..+.. .+|+|.+=+-..+...+.|..+..+++-
T Consensus 111 ~k~GlalnP~T~~~~i~~~l~--~vD~VlvMtV~PGf~GQ~fi~~~l~KI~ 159 (223)
T PRK08745 111 CQAGLVLNPATPVDILDWVLP--ELDLVLVMSVNPGFGGQAFIPSALDKLR 159 (223)
T ss_pred CceeEEeCCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccccHHHHHHHH
Confidence 344444556678888888887 6887766666556555666665555553
No 493
>PLN03034 phosphoglycerate kinase; Provisional
Probab=26.29 E-value=1.5e+02 Score=21.47 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCEEEEcccCCCC--CCceecCcHHHHHhhhCCccEEEECC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGK--VKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~--~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+|.. .-+.++-+|+|++.|+.. -..+-+..+++++-+....||..++.
T Consensus 123 TI~~-L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d 172 (481)
T PLN03034 123 TIKY-LISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADD 172 (481)
T ss_pred HHHH-HHHCCCeEEEEEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCC
Confidence 3444 445689999999888762 22455778888999999999998874
No 494
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=26.23 E-value=1.7e+02 Score=18.19 Aligned_cols=45 Identities=7% Similarity=0.034 Sum_probs=25.5
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceecC---cHHHHHhhhCCccEEEEC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFLG---SVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~g---s~~~~vi~~~~~Pvlvv~ 65 (81)
..+.+.++|.|....++.........+ ....++....+.|++..-
T Consensus 137 ~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~G 184 (219)
T cd04729 137 LNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEG 184 (219)
T ss_pred HHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeC
Confidence 445566899887654443222111111 345666666778988764
No 495
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=26.17 E-value=1e+02 Score=16.42 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
++..+..+..++-|+++...-.... -.....+.+...+|+..+..
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~~-----~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADPRL-----TEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCHHH-----HHHHHHHHHHcCCCEEEECC
Confidence 5566777778899999987643321 12234566778899988874
No 496
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=26.04 E-value=2.2e+02 Score=21.43 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=35.3
Q ss_pred cCCHHHHHHHH---HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 12 DGDARDVICQA---VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~---a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.|+-.++|.+. .+...-....+|.+|.+.. -+..+|+.+...|.||+-+.
T Consensus 14 aGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKT------fT~AnVI~~~~rPtLV~AhN 66 (663)
T COG0556 14 AGDQPEAIAELVEGIENGLKHQTLLGVTGSGKT------FTMANVIAKVQRPTLVLAHN 66 (663)
T ss_pred CCCcHHHHHHHHHHHhcCceeeEEeeeccCCch------hHHHHHHHHhCCCeEEEecc
Confidence 36544555554 4455568899999987642 24679999999999999643
No 497
>PF15517 TBPIP_N: TBP-interacting protein N-terminus; PDB: 2CZR_A.
Probab=25.83 E-value=66 Score=17.96 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=19.3
Q ss_pred cceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
+++++..+..+ +-++.+.+ -++.++|++|+...+.
T Consensus 38 ~~rv~I~ia~skE~AdKla~-k~~~gi~iivvP~kgt 73 (99)
T PF15517_consen 38 GMRVRIRIAESKEEADKLAE-KEEVGIDIIVVPGKGT 73 (99)
T ss_dssp --EEEEEE-SSHHHHHHHSS----SSEEEEEES-TT-
T ss_pred CceEEEEecCCHHHHHHhhh-ccCCCeEEEEECCCCe
Confidence 46667666665 45666666 4677889999877653
No 498
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.79 E-value=1.8e+02 Score=18.41 Aligned_cols=44 Identities=14% Similarity=0.069 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+...++|-|++.....+... ..-+.+....+||+.+-..
T Consensus 46 ~~i~~~~~~~vdgiii~~~~~~~~~------~~l~~l~~~~ipvV~~~~~ 89 (288)
T cd01538 46 SQIENMIAKGVDVLVIAPVDGEALA------SAVEKAADAGIPVIAYDRL 89 (288)
T ss_pred HHHHHHHHcCCCEEEEecCChhhHH------HHHHHHHHCCCCEEEECCC
Confidence 3444444567787776542211111 1113345678999999643
No 499
>PRK10200 putative racemase; Provisional
Probab=25.62 E-value=1e+02 Score=19.57 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=28.1
Q ss_pred HHHHHH---HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVIC---QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~---~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|.+.+. +.-++.++|+|||.-...+.+ .+.+-...++|++=+-
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~--------~~~l~~~~~iPii~ii 105 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKV--------ADAIESRCSLPFLHIA 105 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHH--------HHHHHHhCCCCEeehH
Confidence 555544 455678899999987754322 3556666778887654
No 500
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=25.60 E-value=1.9e+02 Score=18.61 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=27.7
Q ss_pred HHHHHHHHh--cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 17 DVICQAVEQ--MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~--~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+.+++.+.. .++|+||++.-=......... ....+.+...++|+++++..-
T Consensus 43 ~~~i~~i~~~~~~~D~vvitGDl~~~~~~~~~-~~~~~~l~~l~~Pv~~v~GNH 95 (275)
T PRK11148 43 QAVLEAIRAQQHEFDLIVATGDLAQDHSSEAY-QHFAEGIAPLRKPCVWLPGNH 95 (275)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCCCCCHHHH-HHHHHHHhhcCCcEEEeCCCC
Confidence 344444433 368998886542221110001 123456777889999998653
Done!