Query 038513
Match_columns 81
No_of_seqs 227 out of 1308
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:35:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gm3_A Unknown protein; AT3G01 99.8 2.7E-20 9.4E-25 111.2 8.7 74 3-76 100-173 (175)
2 1mjh_A Protein (ATP-binding do 99.8 6.3E-20 2.1E-24 108.3 8.7 65 3-67 96-160 (162)
3 1tq8_A Hypothetical protein RV 99.8 1.5E-19 5.1E-24 107.6 7.2 66 3-68 94-160 (163)
4 3s3t_A Nucleotide-binding prot 99.8 2.1E-19 7.2E-24 104.2 7.0 63 3-65 82-146 (146)
5 2z08_A Universal stress protei 99.8 1.8E-19 6.1E-24 103.9 6.6 63 3-65 74-137 (137)
6 2dum_A Hypothetical protein PH 99.8 3.2E-19 1.1E-23 106.0 7.7 68 3-70 91-160 (170)
7 3fdx_A Putative filament prote 99.8 8.8E-19 3E-23 101.3 8.2 62 3-65 82-143 (143)
8 3hgm_A Universal stress protei 99.8 8E-19 2.7E-23 101.7 7.3 62 3-64 83-147 (147)
9 3tnj_A Universal stress protei 99.8 7.7E-19 2.6E-23 102.3 6.1 62 6-68 88-149 (150)
10 3dlo_A Universal stress protei 99.8 2.4E-18 8E-23 101.7 7.5 63 3-65 91-155 (155)
11 3fg9_A Protein of universal st 99.8 4E-18 1.4E-22 100.0 7.6 62 3-65 92-156 (156)
12 3idf_A USP-like protein; unive 99.7 2.8E-18 9.4E-23 98.8 6.5 60 3-65 79-138 (138)
13 3mt0_A Uncharacterized protein 99.7 3.2E-17 1.1E-21 104.4 5.9 62 6-67 216-277 (290)
14 3loq_A Universal stress protei 99.7 5E-17 1.7E-21 103.6 6.8 66 3-68 227-292 (294)
15 3cis_A Uncharacterized protein 99.7 2.5E-16 8.7E-21 101.0 8.2 63 3-67 245-307 (309)
16 3olq_A Universal stress protei 99.7 3.7E-16 1.3E-20 100.2 8.7 67 2-68 85-152 (319)
17 1jmv_A USPA, universal stress 99.7 5.9E-17 2E-21 93.4 4.5 62 4-68 78-140 (141)
18 3olq_A Universal stress protei 99.7 1.2E-16 4.1E-21 102.5 5.4 64 6-69 245-308 (319)
19 3ab8_A Putative uncharacterize 99.7 5.1E-16 1.8E-20 97.6 8.1 65 3-69 87-152 (268)
20 3cis_A Uncharacterized protein 99.6 9.8E-16 3.4E-20 98.3 8.3 65 3-69 100-164 (309)
21 3mt0_A Uncharacterized protein 99.6 1.7E-15 5.7E-20 96.5 9.1 66 3-68 64-130 (290)
22 1q77_A Hypothetical protein AQ 99.6 2.8E-15 9.6E-20 86.1 5.3 52 5-65 87-138 (138)
23 3loq_A Universal stress protei 99.5 2.7E-15 9.3E-20 95.5 4.0 65 3-69 99-165 (294)
24 3ab8_A Putative uncharacterize 99.5 6.1E-14 2.1E-18 88.1 6.4 57 3-65 212-268 (268)
25 2iel_A Hypothetical protein TT 94.6 0.14 4.7E-06 29.7 5.7 61 3-65 71-134 (138)
26 1iv0_A Hypothetical protein; r 94.4 0.19 6.6E-06 27.2 5.8 53 14-67 38-94 (98)
27 1nu0_A Hypothetical protein YQ 89.8 0.23 7.8E-06 28.6 2.4 55 14-68 40-98 (138)
28 3oow_A Phosphoribosylaminoimid 88.6 2.6 8.8E-05 25.1 6.6 59 3-69 32-94 (166)
29 4b4k_A N5-carboxyaminoimidazol 88.5 2.5 8.7E-05 25.5 6.4 58 3-68 49-110 (181)
30 4grd_A N5-CAIR mutase, phospho 88.2 2.6 8.8E-05 25.3 6.3 58 3-68 39-100 (173)
31 1vhx_A Putative holliday junct 87.5 0.27 9.1E-06 28.6 1.7 56 13-68 41-100 (150)
32 3lp6_A Phosphoribosylaminoimid 87.4 2.8 9.6E-05 25.1 6.1 58 3-68 34-95 (174)
33 2ywx_A Phosphoribosylaminoimid 87.1 3.2 0.00011 24.5 6.5 56 3-66 26-82 (157)
34 3trh_A Phosphoribosylaminoimid 86.8 3.5 0.00012 24.6 6.4 58 3-68 33-94 (169)
35 1o4v_A Phosphoribosylaminoimid 85.6 2.8 9.6E-05 25.3 5.5 58 3-68 40-101 (183)
36 3ors_A N5-carboxyaminoimidazol 85.0 2.9 0.0001 24.8 5.3 58 3-68 30-91 (163)
37 3kuu_A Phosphoribosylaminoimid 84.4 4.8 0.00016 24.1 6.5 58 3-68 39-100 (174)
38 1xmp_A PURE, phosphoribosylami 83.9 5.1 0.00017 23.9 6.6 58 3-68 38-99 (170)
39 1qv9_A F420-dependent methylen 82.7 2.4 8.3E-05 27.0 4.4 46 18-67 55-100 (283)
40 1o97_C Electron transferring f 82.0 3.9 0.00013 25.8 5.3 43 16-62 101-143 (264)
41 1u11_A PURE (N5-carboxyaminoim 81.9 6.5 0.00022 23.7 6.5 58 3-68 48-109 (182)
42 1efv_B Electron transfer flavo 81.1 4.3 0.00015 25.5 5.3 43 16-62 105-147 (255)
43 1efp_B ETF, protein (electron 80.4 4.3 0.00015 25.4 5.1 43 16-62 102-144 (252)
44 2ppv_A Uncharacterized protein 78.1 2.5 8.4E-05 27.8 3.5 52 14-68 166-219 (332)
45 2o2z_A Hypothetical protein; s 77.6 2.9 9.9E-05 27.4 3.8 52 14-68 167-220 (323)
46 2p0y_A Hypothetical protein LP 77.2 1.5 5E-05 29.0 2.3 51 14-67 177-229 (341)
47 3rg8_A Phosphoribosylaminoimid 76.8 9.2 0.00031 22.5 6.9 58 3-68 29-91 (159)
48 1ccw_A Protein (glutamate muta 76.4 4.4 0.00015 22.7 4.0 51 13-65 40-92 (137)
49 2q5c_A NTRC family transcripti 75.2 11 0.00037 22.5 6.0 48 8-67 31-79 (196)
50 2q7x_A UPF0052 protein SP_1565 71.5 1.7 5.8E-05 28.5 1.5 49 15-66 174-224 (326)
51 2yxb_A Coenzyme B12-dependent 70.5 5.1 0.00017 23.2 3.3 50 14-65 56-107 (161)
52 2h31_A Multifunctional protein 70.3 15 0.00051 25.0 5.9 57 3-67 292-353 (425)
53 2i2x_B MTAC, methyltransferase 69.2 11 0.00038 23.4 4.9 53 13-67 160-213 (258)
54 1y80_A Predicted cobalamin bin 66.7 6 0.00021 23.6 3.2 53 13-67 125-180 (210)
55 3qxc_A Dethiobiotin synthetase 66.4 16 0.00053 22.6 5.1 50 17-67 119-170 (242)
56 2f6u_A GGGPS, (S)-3-O-geranylg 66.0 8.1 0.00028 24.0 3.7 48 17-67 23-70 (234)
57 3vk5_A MOEO5; TIM barrel, tran 65.0 5.8 0.0002 25.6 2.9 46 19-65 58-104 (286)
58 1uf3_A Hypothetical protein TT 64.4 11 0.00039 21.8 4.1 53 15-68 20-73 (228)
59 3tdn_A FLR symmetric alpha-bet 63.9 22 0.00074 21.6 5.7 50 16-65 37-86 (247)
60 3f6p_A Transcriptional regulat 63.6 14 0.00047 19.2 4.4 49 13-66 33-81 (120)
61 2l8b_A Protein TRAI, DNA helic 63.1 17 0.0006 22.0 4.7 44 15-64 137-180 (189)
62 3vzx_A Heptaprenylglyceryl pho 62.2 8.6 0.00029 23.9 3.3 47 19-68 23-69 (228)
63 2q8u_A Exonuclease, putative; 62.0 7.8 0.00027 24.6 3.2 53 15-67 49-105 (336)
64 3ezx_A MMCP 1, monomethylamine 61.6 4.1 0.00014 24.8 1.7 52 13-66 129-185 (215)
65 1h5y_A HISF; histidine biosynt 61.5 23 0.00079 21.0 5.2 49 17-65 157-205 (253)
66 3t8y_A CHEB, chemotaxis respon 60.5 19 0.00066 19.8 4.6 49 13-66 58-106 (164)
67 3o3m_A Alpha subunit 2-hydroxy 58.2 7 0.00024 26.0 2.5 55 15-69 322-376 (408)
68 2xdq_A Light-independent proto 57.9 5 0.00017 26.9 1.8 55 14-68 84-138 (460)
69 1xw8_A UPF0271 protein YBGL; N 57.4 23 0.00078 22.4 4.6 41 14-64 118-158 (252)
70 2pju_A Propionate catabolism o 57.2 31 0.0011 21.1 6.1 51 6-68 39-92 (225)
71 2fyw_A Conserved hypothetical 56.8 8.5 0.00029 24.2 2.6 27 8-34 40-66 (267)
72 3w01_A Heptaprenylglyceryl pho 56.7 22 0.00074 22.2 4.4 48 18-68 27-74 (235)
73 2gkg_A Response regulator homo 56.0 11 0.00039 19.3 2.8 45 17-64 39-86 (127)
74 1viz_A PCRB protein homolog; s 55.9 15 0.00052 22.8 3.7 48 17-67 23-70 (240)
75 2w6r_A Imidazole glycerol phos 55.6 32 0.0011 20.9 5.4 49 16-64 32-80 (266)
76 4f2d_A L-arabinose isomerase; 55.5 36 0.0012 23.5 5.7 46 16-67 60-106 (500)
77 3hv2_A Response regulator/HD d 55.3 22 0.00077 19.1 4.1 50 13-67 45-95 (153)
78 3eb2_A Putative dihydrodipicol 55.2 28 0.00095 22.1 4.9 55 14-68 84-140 (300)
79 3kcq_A Phosphoribosylglycinami 54.5 17 0.0006 22.1 3.7 41 17-66 72-112 (215)
80 1jq5_A Glycerol dehydrogenase; 54.5 31 0.001 22.4 5.1 57 3-67 58-119 (370)
81 3o3m_B Beta subunit 2-hydroxya 54.3 2.8 9.6E-05 27.7 0.1 54 14-68 300-353 (385)
82 2vc6_A MOSA, dihydrodipicolina 54.2 20 0.00067 22.7 4.1 54 14-67 80-135 (292)
83 3eod_A Protein HNR; response r 54.1 20 0.00067 18.6 3.6 46 17-67 41-88 (130)
84 3c3d_A 2-phospho-L-lactate tra 53.7 12 0.00043 24.2 3.1 48 14-66 172-221 (311)
85 1a3w_A Pyruvate kinase; allost 53.6 13 0.00045 25.8 3.3 45 15-68 382-427 (500)
86 2ehh_A DHDPS, dihydrodipicolin 53.6 21 0.00071 22.6 4.1 54 14-67 80-135 (294)
87 2yyb_A Hypothetical protein TT 53.3 8 0.00027 24.0 2.1 21 14-34 44-64 (242)
88 1w2w_B 5-methylthioribose-1-ph 53.1 15 0.00051 22.0 3.2 45 24-68 46-95 (191)
89 3d0c_A Dihydrodipicolinate syn 52.9 42 0.0014 21.4 6.3 52 14-65 91-144 (314)
90 2lpm_A Two-component response 52.9 27 0.00091 19.1 5.3 47 16-67 42-88 (123)
91 3grc_A Sensor protein, kinase; 52.9 19 0.00064 19.0 3.4 47 17-67 40-89 (140)
92 1xky_A Dihydrodipicolinate syn 52.7 21 0.00073 22.7 4.1 54 14-67 92-147 (301)
93 3ih5_A Electron transfer flavo 52.6 13 0.00046 22.5 3.0 23 15-37 79-101 (217)
94 2yxg_A DHDPS, dihydrodipicolin 52.4 20 0.00067 22.6 3.8 54 14-67 80-135 (289)
95 2r91_A 2-keto-3-deoxy-(6-phosp 52.3 23 0.00077 22.3 4.1 54 14-67 75-131 (286)
96 3pm6_A Putative fructose-bisph 52.3 4.2 0.00014 26.4 0.7 51 14-64 38-88 (306)
97 2a9o_A Response regulator; ess 52.1 22 0.00076 18.0 4.8 49 14-67 33-81 (120)
98 2dfa_A Hypothetical UPF0271 pr 51.9 24 0.00081 22.3 4.1 41 14-64 123-163 (250)
99 3m5v_A DHDPS, dihydrodipicolin 51.9 22 0.00076 22.5 4.1 54 14-67 88-143 (301)
100 3b2n_A Uncharacterized protein 51.7 23 0.00079 18.6 3.7 50 13-67 36-86 (133)
101 3r7f_A Aspartate carbamoyltran 51.7 28 0.00096 22.5 4.5 41 13-62 78-118 (304)
102 2y88_A Phosphoribosyl isomeras 51.6 35 0.0012 20.4 4.8 49 17-65 152-200 (244)
103 2nuw_A 2-keto-3-deoxygluconate 51.6 23 0.00078 22.4 4.0 54 14-67 76-132 (288)
104 3na8_A Putative dihydrodipicol 51.5 23 0.00079 22.7 4.1 54 14-67 104-159 (315)
105 1nmo_A Hypothetical protein YB 51.3 9 0.00031 23.8 2.1 22 13-34 42-63 (247)
106 3cg0_A Response regulator rece 51.2 25 0.00086 18.4 5.6 51 13-67 41-91 (140)
107 1v6t_A Hypothetical UPF0271 pr 51.1 24 0.00084 22.3 4.0 41 14-64 123-163 (255)
108 2rfg_A Dihydrodipicolinate syn 50.7 22 0.00076 22.5 3.9 54 14-67 80-135 (297)
109 1o5k_A DHDPS, dihydrodipicolin 50.7 21 0.00072 22.7 3.8 54 14-67 92-147 (306)
110 1zmr_A Phosphoglycerate kinase 50.7 33 0.0011 23.1 4.8 47 21-67 45-95 (387)
111 3kyj_B CHEY6 protein, putative 50.6 27 0.00092 18.5 5.2 51 11-66 44-95 (145)
112 2xdq_B Light-independent proto 50.6 9.8 0.00034 26.0 2.3 55 14-68 75-129 (511)
113 4drs_A Pyruvate kinase; glycol 50.4 44 0.0015 23.3 5.5 44 15-67 412-456 (526)
114 3cpr_A Dihydrodipicolinate syn 50.2 25 0.00086 22.4 4.1 54 14-67 96-151 (304)
115 3khd_A Pyruvate kinase; malari 50.2 45 0.0016 23.3 5.5 43 16-67 407-450 (520)
116 3flu_A DHDPS, dihydrodipicolin 50.1 25 0.00087 22.2 4.1 54 14-67 87-142 (297)
117 3fgn_A Dethiobiotin synthetase 49.9 36 0.0012 21.1 4.7 49 17-67 114-166 (251)
118 3tak_A DHDPS, dihydrodipicolin 49.7 23 0.0008 22.3 3.9 54 14-67 81-136 (291)
119 3qze_A DHDPS, dihydrodipicolin 49.6 26 0.00089 22.4 4.1 54 14-67 103-158 (314)
120 3to5_A CHEY homolog; alpha(5)b 49.4 24 0.00082 19.5 3.6 45 18-67 48-96 (134)
121 3gg8_A Pyruvate kinase; malari 49.1 48 0.0016 23.1 5.5 43 16-67 398-441 (511)
122 3nbm_A PTS system, lactose-spe 48.9 8.3 0.00029 21.0 1.5 16 51-66 71-86 (108)
123 3cz5_A Two-component response 48.8 25 0.00085 18.9 3.6 51 12-67 37-88 (153)
124 2qzj_A Two-component response 48.7 29 0.00099 18.3 4.7 50 13-67 35-84 (136)
125 2j07_A Deoxyribodipyrimidine p 48.7 13 0.00043 24.9 2.6 57 6-67 66-122 (420)
126 2zay_A Response regulator rece 48.6 29 0.001 18.4 5.2 50 13-67 39-91 (147)
127 3l21_A DHDPS, dihydrodipicolin 48.6 23 0.00079 22.6 3.7 54 14-67 95-150 (304)
128 2r8w_A AGR_C_1641P; APC7498, d 48.3 25 0.00084 22.8 3.9 54 14-67 114-169 (332)
129 1w3i_A EDA, 2-keto-3-deoxy glu 48.3 22 0.00075 22.5 3.6 54 14-67 76-132 (293)
130 3hqn_D Pyruvate kinase, PK; TI 48.3 50 0.0017 22.9 5.5 43 16-67 382-425 (499)
131 2g0t_A Conserved hypothetical 48.0 45 0.0016 21.9 5.1 38 25-64 242-279 (350)
132 1to6_A Glycerate kinase; glyce 48.0 25 0.00087 23.4 3.9 39 26-66 277-317 (371)
133 2a0u_A Initiation factor 2B; S 47.8 41 0.0014 22.4 4.9 45 23-67 252-299 (383)
134 2bon_A Lipid kinase; DAG kinas 47.7 52 0.0018 20.9 5.4 61 3-69 57-121 (332)
135 1xrs_B D-lysine 5,6-aminomutas 47.7 16 0.00055 23.1 2.8 25 14-38 167-191 (262)
136 3pdi_A Nitrogenase MOFE cofact 47.7 6.4 0.00022 26.9 1.1 54 14-67 109-162 (483)
137 3si9_A DHDPS, dihydrodipicolin 47.6 28 0.00097 22.3 4.1 54 14-67 102-157 (315)
138 1f6k_A N-acetylneuraminate lya 47.5 20 0.00068 22.7 3.3 53 14-66 84-138 (293)
139 1vzw_A Phosphoribosyl isomeras 47.3 31 0.001 20.7 4.1 49 17-65 149-197 (244)
140 1e0t_A Pyruvate kinase, PK; ph 47.2 47 0.0016 22.8 5.2 44 15-67 358-402 (470)
141 1gvf_A Tagatose-bisphosphate a 46.7 6.5 0.00022 25.2 0.9 52 14-65 29-81 (286)
142 2v9d_A YAGE; dihydrodipicolini 46.5 26 0.00089 22.8 3.8 54 14-67 111-166 (343)
143 2gx8_A NIF3-related protein; s 45.7 16 0.00053 24.6 2.7 28 6-33 64-91 (397)
144 4e7p_A Response regulator; DNA 45.7 34 0.0012 18.3 4.8 48 16-67 55-103 (150)
145 3q9s_A DNA-binding response re 45.6 41 0.0014 20.1 4.5 47 17-67 71-117 (249)
146 2qv7_A Diacylglycerol kinase D 45.6 56 0.0019 20.8 5.6 60 4-69 56-117 (337)
147 1srr_A SPO0F, sporulation resp 45.5 28 0.00094 17.8 3.3 47 17-67 37-84 (124)
148 3q94_A Fructose-bisphosphate a 45.4 7.2 0.00025 25.1 1.0 52 14-65 32-87 (288)
149 3oz2_A Digeranylgeranylglycero 45.3 16 0.00055 22.9 2.6 15 21-35 21-35 (397)
150 3h5i_A Response regulator/sens 45.2 33 0.0011 18.1 6.4 54 12-68 35-88 (140)
151 1s8n_A Putative antiterminator 45.0 42 0.0014 19.1 4.7 49 13-66 45-93 (205)
152 3u7q_A Nitrogenase molybdenum- 44.9 14 0.00049 25.3 2.4 55 14-68 130-185 (492)
153 1xhf_A DYE resistance, aerobic 44.7 31 0.0011 17.5 4.8 47 17-67 37-83 (123)
154 2etv_A Iron(III) ABC transport 44.7 26 0.00089 22.3 3.6 39 16-67 89-127 (346)
155 3daq_A DHDPS, dihydrodipicolin 44.6 23 0.0008 22.3 3.3 54 14-67 82-137 (292)
156 1zgz_A Torcad operon transcrip 44.5 31 0.0011 17.5 5.0 47 17-67 36-82 (122)
157 3psh_A Protein HI_1472; substr 44.4 56 0.0019 20.4 5.4 35 25-68 82-116 (326)
158 3of5_A Dethiobiotin synthetase 44.1 38 0.0013 20.4 4.1 47 17-66 97-148 (228)
159 1o97_D Electron transferring f 43.9 20 0.00069 23.2 2.9 22 16-37 76-97 (320)
160 2wkj_A N-acetylneuraminate lya 43.7 24 0.00083 22.4 3.3 53 14-66 91-146 (303)
161 2xry_A Deoxyribodipyrimidine p 43.6 16 0.00056 24.7 2.6 56 6-66 106-161 (482)
162 3eul_A Possible nitrate/nitrit 43.5 37 0.0013 18.1 4.6 50 13-67 48-98 (152)
163 2rjn_A Response regulator rece 43.4 24 0.00082 19.0 2.9 46 17-66 41-87 (154)
164 3e96_A Dihydrodipicolinate syn 43.3 26 0.00089 22.4 3.4 53 14-66 91-145 (316)
165 2oqr_A Sensory transduction pr 43.3 47 0.0016 19.2 4.7 49 13-66 35-83 (230)
166 3gr4_A Pyruvate kinase isozyme 43.2 55 0.0019 23.1 5.1 42 17-67 433-475 (550)
167 1thf_D HISF protein; thermophI 42.7 53 0.0018 19.7 5.7 50 16-65 153-202 (253)
168 3a11_A Translation initiation 42.6 39 0.0013 22.0 4.2 41 27-67 209-252 (338)
169 2ojp_A DHDPS, dihydrodipicolin 42.6 27 0.00093 22.0 3.4 54 14-67 81-136 (292)
170 1xrs_A D-lysine 5,6-aminomutas 42.5 31 0.0011 23.9 3.7 43 6-48 153-198 (516)
171 2qr3_A Two-component system re 42.5 23 0.0008 18.5 2.7 47 17-66 37-88 (140)
172 2qsj_A DNA-binding response re 42.1 32 0.0011 18.4 3.3 50 13-67 36-87 (154)
173 2nyd_A UPF0135 protein SA1388; 42.1 15 0.0005 24.4 2.1 27 8-34 42-68 (370)
174 3p9x_A Phosphoribosylglycinami 42.0 29 0.001 21.1 3.3 42 16-66 70-111 (211)
175 2e28_A Pyruvate kinase, PK; al 42.0 76 0.0026 22.4 5.7 43 16-67 362-405 (587)
176 4e0q_A COP9 signalosome comple 41.7 40 0.0014 19.0 3.7 54 15-68 71-124 (141)
177 3t6k_A Response regulator rece 41.4 39 0.0013 17.8 4.1 50 13-67 35-87 (136)
178 3kht_A Response regulator; PSI 41.3 40 0.0014 17.8 4.6 46 17-67 41-90 (144)
179 4fey_A Phosphoglycerate kinase 41.1 40 0.0014 22.8 4.0 47 21-67 48-98 (395)
180 3da8_A Probable 5'-phosphoribo 41.1 28 0.00095 21.2 3.1 22 16-37 78-99 (215)
181 3tqr_A Phosphoribosylglycinami 40.9 29 0.001 21.1 3.2 43 16-67 72-114 (215)
182 4ds3_A Phosphoribosylglycinami 40.8 28 0.00097 21.1 3.1 43 16-67 75-117 (209)
183 3t05_A Pyruvate kinase, PK; te 40.7 68 0.0023 22.8 5.3 42 17-67 382-424 (606)
184 1owl_A Photolyase, deoxyribodi 39.9 17 0.00059 24.7 2.2 59 7-67 72-130 (484)
185 1pg5_A Aspartate carbamoyltran 39.7 63 0.0022 20.7 4.7 42 12-63 80-121 (299)
186 3a5f_A Dihydrodipicolinate syn 39.6 19 0.00066 22.7 2.3 54 14-67 81-136 (291)
187 3aek_B Light-independent proto 39.6 48 0.0016 22.8 4.4 51 14-68 72-124 (525)
188 3b4u_A Dihydrodipicolinate syn 39.5 36 0.0012 21.5 3.6 54 14-67 83-142 (294)
189 1a2o_A CHEB methylesterase; ba 39.4 60 0.0021 20.9 4.7 51 12-67 35-85 (349)
190 3n53_A Response regulator rece 39.2 42 0.0015 17.5 6.4 50 14-68 34-86 (140)
191 2qxy_A Response regulator; reg 39.2 43 0.0015 17.5 3.8 46 17-67 38-84 (142)
192 4f1h_A Tyrosyl-DNA phosphodies 39.0 28 0.00096 19.8 2.9 20 16-35 23-42 (250)
193 1ml4_A Aspartate transcarbamoy 39.0 65 0.0022 20.8 4.7 26 28-62 101-126 (308)
194 3rxy_A NIF3 protein; structura 38.6 23 0.00077 22.8 2.5 25 9-33 41-65 (278)
195 3dcm_X AdoMet, uncharacterized 38.4 65 0.0022 19.4 5.5 53 11-64 87-139 (192)
196 4hn9_A Iron complex transport 38.4 73 0.0025 20.0 5.0 33 24-66 113-145 (335)
197 3av3_A Phosphoribosylglycinami 38.3 36 0.0012 20.5 3.3 43 16-67 71-113 (212)
198 2ywr_A Phosphoribosylglycinami 38.3 36 0.0012 20.6 3.3 42 17-67 70-111 (216)
199 3ou5_A Serine hydroxymethyltra 38.3 35 0.0012 23.7 3.5 44 15-61 191-234 (490)
200 1tif_A IF3-N, translation init 38.2 34 0.0012 17.6 2.7 31 15-45 30-60 (78)
201 1t9k_A Probable methylthioribo 38.1 39 0.0013 22.2 3.6 44 24-67 224-270 (347)
202 2j48_A Two-component sensor ki 37.9 39 0.0013 16.7 5.1 47 17-67 35-84 (119)
203 2hmc_A AGR_L_411P, dihydrodipi 37.9 44 0.0015 21.8 3.9 54 14-67 103-160 (344)
204 2yvk_A Methylthioribose-1-phos 37.9 41 0.0014 22.4 3.7 45 23-67 248-295 (374)
205 3bul_A Methionine synthase; tr 37.5 21 0.00073 25.2 2.4 53 13-67 135-188 (579)
206 2k4m_A TR8_protein, UPF0146 pr 37.4 25 0.00085 20.6 2.3 28 14-41 101-128 (153)
207 3auf_A Glycinamide ribonucleot 37.4 38 0.0013 20.8 3.3 43 16-67 90-132 (229)
208 4fva_A 5'-tyrosyl-DNA phosphod 37.3 30 0.001 20.0 2.9 21 16-36 33-53 (256)
209 3pdi_B Nitrogenase MOFE cofact 37.2 18 0.00062 24.5 2.0 51 14-68 79-137 (458)
210 3cu5_A Two component transcrip 37.2 48 0.0016 17.5 4.0 48 17-68 39-87 (141)
211 2xw6_A MGS, methylglyoxal synt 37.2 57 0.002 18.4 4.0 43 17-62 64-109 (134)
212 1jkx_A GART;, phosphoribosylgl 37.1 37 0.0013 20.5 3.2 43 16-67 68-110 (212)
213 1ka9_F Imidazole glycerol phos 37.0 67 0.0023 19.2 5.2 50 16-65 154-203 (252)
214 1mio_B Nitrogenase molybdenum 37.0 16 0.00055 24.6 1.7 51 14-68 83-141 (458)
215 1qkk_A DCTD, C4-dicarboxylate 36.9 18 0.00062 19.5 1.7 46 17-66 37-83 (155)
216 3cnb_A DNA-binding response re 36.9 46 0.0016 17.3 5.3 47 17-67 44-93 (143)
217 3sig_A PArg, poly(ADP-ribose) 36.8 51 0.0018 21.0 3.9 27 15-41 199-225 (277)
218 3o1l_A Formyltetrahydrofolate 36.8 37 0.0013 21.8 3.3 22 16-37 170-191 (302)
219 3qvl_A Putative hydantoin race 36.8 53 0.0018 20.2 4.0 19 23-41 170-188 (245)
220 3nrb_A Formyltetrahydrofolate 36.8 34 0.0011 21.8 3.1 42 16-66 154-195 (287)
221 3cwc_A Putative glycerate kina 36.7 38 0.0013 22.7 3.5 37 27-65 287-326 (383)
222 3m9w_A D-xylose-binding peripl 36.7 71 0.0024 19.4 7.2 44 19-68 50-93 (313)
223 4dad_A Putative pilus assembly 36.7 36 0.0012 18.0 2.9 51 13-67 52-104 (146)
224 3lou_A Formyltetrahydrofolate 36.5 34 0.0012 21.9 3.1 41 16-65 160-200 (292)
225 3obi_A Formyltetrahydrofolate 36.5 34 0.0012 21.8 3.1 41 16-65 155-195 (288)
226 2gwr_A DNA-binding response re 36.5 49 0.0017 19.4 3.7 43 21-67 43-85 (238)
227 3dff_A Teicoplanin pseudoaglyc 36.4 33 0.0011 21.5 3.0 51 15-65 136-186 (273)
228 3qtg_A Pyruvate kinase, PK; TI 36.4 79 0.0027 21.7 5.0 41 17-67 364-405 (461)
229 3klo_A Transcriptional regulat 36.3 27 0.00092 20.4 2.5 51 12-67 39-92 (225)
230 3fni_A Putative diflavin flavo 36.3 49 0.0017 18.6 3.6 22 16-39 47-68 (159)
231 1meo_A Phosophoribosylglycinam 36.2 40 0.0014 20.3 3.2 42 17-67 69-110 (209)
232 3psf_A Transcription elongatio 36.1 28 0.00095 26.4 2.9 50 16-68 567-624 (1030)
233 3gxq_A Putative regulator of t 36.1 35 0.0012 15.7 2.9 25 6-30 12-37 (54)
234 4gz1_A Tyrosyl-DNA phosphodies 35.9 33 0.0011 19.8 2.9 20 16-35 29-48 (256)
235 3md9_A Hemin-binding periplasm 35.9 70 0.0024 19.1 5.4 37 22-66 54-90 (255)
236 3n0v_A Formyltetrahydrofolate 35.9 35 0.0012 21.7 3.1 42 16-66 155-196 (286)
237 3kkj_A Amine oxidase, flavin-c 35.8 44 0.0015 18.9 3.4 33 27-67 2-34 (336)
238 3gl9_A Response regulator; bet 35.3 48 0.0016 17.0 4.5 50 13-67 33-85 (122)
239 3l49_A ABC sugar (ribose) tran 35.2 58 0.002 19.5 3.9 16 52-67 80-95 (291)
240 3hdg_A Uncharacterized protein 35.2 50 0.0017 17.1 4.9 47 17-67 41-88 (137)
241 3bzc_A TEX; helix-turn-helix, 35.1 27 0.00093 25.6 2.7 49 15-67 371-422 (785)
242 1xm7_A Hypothetical protein AQ 34.7 62 0.0021 18.5 3.9 26 16-41 128-153 (195)
243 3hly_A Flavodoxin-like domain; 34.6 49 0.0017 18.6 3.4 38 27-66 51-90 (161)
244 2yvt_A Hypothetical protein AQ 34.1 74 0.0025 18.8 5.6 22 15-36 20-41 (260)
245 1efv_A Electron transfer flavo 34.0 37 0.0013 21.9 3.0 23 15-37 74-96 (315)
246 1np7_A DNA photolyase; protein 34.0 20 0.00067 24.4 1.8 60 6-67 79-138 (489)
247 3psi_A Transcription elongatio 33.9 31 0.0011 26.6 2.9 50 16-68 564-621 (1219)
248 1uuy_A CNX1, molybdopterin bio 33.9 68 0.0023 18.3 4.4 32 3-34 43-78 (167)
249 2cun_A Phosphoglycerate kinase 33.6 61 0.0021 22.0 4.0 46 21-66 43-89 (410)
250 1b93_A Protein (methylglyoxal 33.6 71 0.0024 18.5 4.0 60 3-62 57-117 (152)
251 3txv_A Probable tagatose 6-pho 33.6 68 0.0023 22.0 4.3 48 14-61 32-86 (450)
252 4gj1_A 1-(5-phosphoribosyl)-5- 33.6 48 0.0016 20.3 3.4 56 8-64 26-81 (243)
253 3o1i_D Periplasmic protein TOR 33.5 79 0.0027 18.9 6.8 40 19-65 55-94 (304)
254 1jfl_A Aspartate racemase; alp 33.5 28 0.00097 20.8 2.3 38 18-63 65-102 (228)
255 3gt7_A Sensor protein; structu 33.5 59 0.002 17.5 4.9 47 17-67 41-90 (154)
256 3f6c_A Positive transcription 33.2 53 0.0018 16.9 3.7 43 21-67 40-83 (134)
257 2j4d_A Cryptochrome 3, cryptoc 33.0 21 0.00071 24.6 1.8 59 7-67 115-175 (525)
258 1vpe_A Phosphoglycerate kinase 32.9 56 0.0019 22.1 3.7 47 21-67 44-93 (398)
259 3hzh_A Chemotaxis response reg 32.7 61 0.0021 17.4 4.4 51 12-67 67-120 (157)
260 1y5e_A Molybdenum cofactor bio 32.6 73 0.0025 18.3 4.4 32 3-34 44-79 (169)
261 3cg4_A Response regulator rece 32.6 56 0.0019 17.0 5.8 48 17-68 41-91 (142)
262 3tpf_A Otcase, ornithine carba 32.5 62 0.0021 20.9 3.8 28 28-64 92-119 (307)
263 2q8p_A Iron-regulated surface 32.4 47 0.0016 19.9 3.2 34 24-66 57-90 (260)
264 3fet_A Electron transfer flavo 32.1 39 0.0013 19.6 2.7 19 16-36 60-78 (166)
265 1u2m_A Histone-like protein HL 32.1 47 0.0016 18.4 3.0 19 15-33 102-120 (143)
266 3jyf_A 2',3'-cyclic nucleotide 32.0 1E+02 0.0035 19.9 5.7 53 13-65 184-241 (339)
267 3dfi_A Pseudoaglycone deacetyl 32.0 51 0.0017 20.5 3.4 51 15-65 133-183 (270)
268 3lp8_A Phosphoribosylamine-gly 31.9 43 0.0015 22.3 3.1 21 15-35 71-91 (442)
269 3s40_A Diacylglycerol kinase; 31.9 95 0.0033 19.4 5.1 59 4-69 40-100 (304)
270 4a8t_A Putrescine carbamoyltra 31.9 65 0.0022 21.1 3.9 40 13-62 105-144 (339)
271 3i42_A Response regulator rece 31.7 56 0.0019 16.7 5.9 48 17-68 37-87 (127)
272 1mio_A Nitrogenase molybdenum 31.6 19 0.00065 25.0 1.4 51 14-68 121-175 (533)
273 2pln_A HP1043, response regula 31.5 59 0.002 16.9 4.6 43 17-67 52-95 (137)
274 3s81_A Putative aspartate race 31.5 55 0.0019 20.5 3.4 39 18-64 90-128 (268)
275 1oth_A Protein (ornithine tran 31.4 63 0.0022 21.0 3.8 32 21-62 96-127 (321)
276 1f76_A Dihydroorotate dehydrog 31.3 1E+02 0.0035 19.5 5.3 34 3-36 211-247 (336)
277 3nhm_A Response regulator; pro 31.2 58 0.002 16.7 6.5 48 17-68 37-87 (133)
278 2rdm_A Response regulator rece 31.2 57 0.002 16.6 4.0 51 13-67 36-88 (132)
279 2zsk_A PH1733, 226AA long hypo 31.1 30 0.001 20.7 2.1 20 20-39 66-85 (226)
280 3fkr_A L-2-keto-3-deoxyarabona 30.7 64 0.0022 20.5 3.7 53 14-67 88-146 (309)
281 3h5d_A DHDPS, dihydrodipicolin 30.7 75 0.0026 20.2 4.0 54 14-67 87-143 (311)
282 1pvv_A Otcase, ornithine carba 30.5 61 0.0021 20.9 3.6 27 28-63 102-128 (315)
283 2b4a_A BH3024; flavodoxin-like 30.5 41 0.0014 17.6 2.5 47 17-67 49-98 (138)
284 3jte_A Response regulator rece 30.5 63 0.0021 16.9 3.5 51 13-67 34-86 (143)
285 3rot_A ABC sugar transporter, 30.4 92 0.0031 18.8 6.2 44 19-68 53-96 (297)
286 3nkl_A UDP-D-quinovosamine 4-d 30.4 47 0.0016 17.8 2.8 47 16-66 54-100 (141)
287 2ef0_A Ornithine carbamoyltran 30.4 63 0.0021 20.8 3.6 27 28-63 101-127 (301)
288 3q3v_A Phosphoglycerate kinase 30.3 57 0.0019 22.1 3.5 47 21-67 50-98 (403)
289 1jlj_A Gephyrin; globular alph 30.3 87 0.003 18.4 4.4 32 3-34 50-85 (189)
290 3rqi_A Response regulator prot 30.3 75 0.0026 17.7 4.4 49 13-67 38-88 (184)
291 3s5o_A 4-hydroxy-2-oxoglutarat 30.1 74 0.0025 20.2 3.9 54 14-67 94-151 (307)
292 3csu_A Protein (aspartate carb 30.1 1.1E+02 0.0039 19.7 5.1 39 16-63 85-126 (310)
293 1iej_A Ovotransferrin; iron, m 30.0 72 0.0025 20.7 3.9 33 3-35 29-61 (332)
294 1zh2_A KDP operon transcriptio 30.0 57 0.002 16.3 4.5 50 13-67 32-81 (121)
295 3d6n_B Aspartate carbamoyltran 30.0 1.1E+02 0.0038 19.5 5.2 41 13-62 76-117 (291)
296 1zq6_A Otcase, ornithine carba 29.9 84 0.0029 20.8 4.2 41 20-62 119-161 (359)
297 1t5o_A EIF2BD, translation ini 29.8 65 0.0022 21.2 3.6 44 24-67 222-267 (351)
298 2is8_A Molybdopterin biosynthe 29.8 81 0.0028 17.9 4.4 18 17-34 52-69 (164)
299 3grf_A Ornithine carbamoyltran 29.6 62 0.0021 21.1 3.5 31 22-62 96-126 (328)
300 1qpg_A PGK, 3-phosphoglycerate 29.3 75 0.0026 21.6 3.9 46 21-66 47-96 (415)
301 3iwt_A 178AA long hypothetical 29.3 84 0.0029 18.0 4.3 33 3-35 53-89 (178)
302 3ecs_A Translation initiation 29.2 70 0.0024 20.7 3.7 41 27-67 189-232 (315)
303 3qfe_A Putative dihydrodipicol 29.2 91 0.0031 19.9 4.2 55 14-68 91-149 (318)
304 1ypf_A GMP reductase; GUAC, pu 29.0 59 0.002 20.9 3.3 47 18-64 161-216 (336)
305 1z2w_A Vacuolar protein sortin 29.0 86 0.0029 17.9 4.4 24 16-39 106-129 (192)
306 3oz7_A Phosphoglycerate kinase 28.9 72 0.0025 21.7 3.8 50 17-67 47-100 (417)
307 1vmd_A MGS, methylglyoxal synt 28.7 97 0.0033 18.5 4.4 43 17-62 88-133 (178)
308 3l6u_A ABC-type sugar transpor 28.5 97 0.0033 18.4 7.4 44 19-68 56-99 (293)
309 1jvn_A Glutamine, bifunctional 28.3 1.1E+02 0.0039 21.1 4.8 49 16-64 454-502 (555)
310 2g2c_A Putative molybdenum cof 28.3 88 0.003 17.9 4.2 8 27-34 69-76 (167)
311 3h1g_A Chemotaxis protein CHEY 28.3 67 0.0023 16.5 4.4 52 12-67 36-90 (129)
312 3fy4_A 6-4 photolyase; DNA rep 28.1 17 0.0006 25.2 0.7 30 6-35 82-111 (537)
313 3ln7_A Glutathione biosynthesi 28.1 46 0.0016 24.2 2.9 23 15-37 434-456 (757)
314 1dxh_A Ornithine carbamoyltran 27.9 80 0.0027 20.6 3.8 27 28-63 101-127 (335)
315 4a8p_A Putrescine carbamoyltra 27.8 69 0.0024 21.2 3.5 26 28-62 97-122 (355)
316 3mjf_A Phosphoribosylamine--gl 27.7 38 0.0013 22.4 2.3 21 15-35 55-75 (431)
317 1php_A 3-phosphoglycerate kina 27.6 63 0.0022 21.8 3.3 46 21-66 45-93 (394)
318 1vyb_A ORF2 contains A reverse 27.5 52 0.0018 18.9 2.7 21 17-37 25-45 (238)
319 2qh9_A UPF0215 protein AF_1433 27.3 64 0.0022 19.1 3.1 56 6-65 38-98 (184)
320 2fiq_A Putative tagatose 6-pho 27.2 91 0.0031 21.1 4.1 51 14-64 25-85 (420)
321 4f2g_A Otcase 1, ornithine car 27.2 68 0.0023 20.7 3.4 33 22-64 96-128 (309)
322 2w37_A Ornithine carbamoyltran 27.1 86 0.0029 20.8 3.9 27 28-63 123-149 (359)
323 1js1_X Transcarbamylase; alpha 27.0 1E+02 0.0034 20.1 4.1 36 28-63 104-140 (324)
324 3elf_A Fructose-bisphosphate a 26.9 16 0.00055 24.1 0.4 55 14-68 32-97 (349)
325 1qo2_A Molecule: N-((5-phospho 26.9 39 0.0013 20.3 2.1 50 15-64 145-194 (241)
326 2jk1_A HUPR, hydrogenase trans 26.7 59 0.002 17.0 2.7 46 17-66 34-80 (139)
327 1tjy_A Sugar transport protein 26.7 1.1E+02 0.0039 18.7 4.4 49 13-67 44-94 (316)
328 1tqx_A D-ribulose-5-phosphate 26.7 1.1E+02 0.0038 18.6 4.3 47 5-51 116-162 (227)
329 3ady_A DOTD; 3-layer(BAB) sand 26.6 84 0.0029 18.2 3.4 33 9-41 70-102 (148)
330 1ii7_A MRE11 nuclease; RAD50, 26.6 57 0.002 20.5 2.9 53 16-68 29-85 (333)
331 3gd5_A Otcase, ornithine carba 26.5 58 0.002 21.2 2.9 40 13-62 90-129 (323)
332 1y0e_A Putative N-acetylmannos 26.4 1E+02 0.0035 18.0 4.3 44 22-65 134-182 (223)
333 3lte_A Response regulator; str 26.4 72 0.0025 16.3 4.9 21 17-37 40-60 (132)
334 1tmy_A CHEY protein, TMY; chem 26.3 69 0.0024 16.0 4.5 50 13-67 34-84 (120)
335 2jc4_A Exodeoxyribonuclease II 26.3 53 0.0018 19.1 2.6 23 15-37 14-36 (256)
336 2eq5_A 228AA long hypothetical 26.3 1.1E+02 0.0036 18.1 4.8 33 22-63 70-102 (228)
337 3riy_A NAD-dependent deacetyla 26.3 1E+02 0.0035 19.3 4.0 45 17-68 204-249 (273)
338 2z6i_A Trans-2-enoyl-ACP reduc 26.3 79 0.0027 20.1 3.6 46 20-65 123-169 (332)
339 2voa_A AF_EXO, XTHA, exodeoxyr 26.2 55 0.0019 19.2 2.7 23 15-37 15-37 (257)
340 2wq7_A RE11660P; lyase-DNA com 26.1 24 0.00083 24.4 1.2 59 7-67 104-162 (543)
341 1m33_A BIOH protein; alpha-bet 26.1 49 0.0017 19.2 2.5 15 54-68 192-206 (258)
342 3nbk_A Phosphopantetheine aden 26.1 61 0.0021 19.1 2.8 26 18-43 92-117 (177)
343 3kp1_A D-ornithine aminomutase 26.0 53 0.0018 24.0 2.8 24 14-37 644-667 (763)
344 1vlv_A Otcase, ornithine carba 26.0 74 0.0025 20.7 3.4 26 28-62 114-139 (325)
345 2r7a_A Bacterial heme binding 25.9 1.1E+02 0.0037 18.2 4.9 35 24-66 56-90 (256)
346 3sgz_A Hydroxyacid oxidase 2; 25.8 92 0.0031 20.5 3.8 45 17-64 228-278 (352)
347 3tvs_A Cryptochrome-1; circadi 25.8 27 0.00092 24.2 1.3 30 6-35 78-107 (538)
348 3n0r_A Response regulator; sig 25.7 1.2E+02 0.0042 18.7 5.9 51 13-67 192-242 (286)
349 1v6s_A Phosphoglycerate kinase 25.7 1.2E+02 0.004 20.5 4.3 46 21-67 43-90 (390)
350 3ojc_A Putative aspartate/glut 25.6 44 0.0015 20.3 2.2 38 19-64 68-105 (231)
351 2jba_A Phosphate regulon trans 25.6 46 0.0016 16.9 2.1 44 18-66 37-84 (127)
352 2i6u_A Otcase, ornithine carba 25.4 65 0.0022 20.7 3.0 26 28-62 95-120 (307)
353 2kx7_A Sensor-like histidine k 25.3 55 0.0019 18.2 2.3 61 1-65 5-65 (117)
354 2vqm_A HD4, histone deacetylas 25.3 67 0.0023 21.5 3.2 51 17-67 269-330 (413)
355 1req_A Methylmalonyl-COA mutas 25.3 54 0.0019 23.9 2.8 25 14-38 634-658 (727)
356 3kl4_A SRP54, signal recogniti 25.2 95 0.0033 20.9 3.9 27 20-46 172-200 (433)
357 2pbq_A Molybdenum cofactor bio 25.2 1.1E+02 0.0036 17.8 4.2 17 18-34 59-75 (178)
358 3d03_A Phosphohydrolase; glyce 25.1 1.1E+02 0.0038 18.0 4.8 52 16-68 28-81 (274)
359 4a0g_A Adenosylmethionine-8-am 24.9 1.5E+02 0.0051 21.7 5.0 38 27-67 201-240 (831)
360 3rsc_A CALG2; TDP, enediyne, s 24.9 1E+02 0.0035 19.5 3.9 40 17-65 108-147 (415)
361 3snk_A Response regulator CHEY 24.8 41 0.0014 17.5 1.8 41 23-67 55-96 (135)
362 3gbv_A Putative LACI-family tr 24.8 1E+02 0.0034 18.4 3.7 44 19-68 61-104 (304)
363 3c3w_A Two component transcrip 24.7 1E+02 0.0035 17.8 3.7 51 12-67 33-84 (225)
364 4djd_D C/Fe-SP, corrinoid/iron 24.7 1E+02 0.0035 20.0 3.9 44 21-64 88-135 (323)
365 2r79_A Periplasmic binding pro 24.5 1.2E+02 0.0043 18.3 5.3 36 23-66 55-90 (283)
366 2hqr_A Putative transcriptiona 24.5 90 0.0031 17.8 3.4 43 17-67 34-77 (223)
367 2pl1_A Transcriptional regulat 24.4 76 0.0026 15.8 5.0 47 17-67 34-81 (121)
368 2a22_A Vacuolar protein sortin 24.2 1.1E+02 0.0039 17.8 5.1 33 7-39 115-153 (215)
369 3cfy_A Putative LUXO repressor 23.9 87 0.003 16.3 4.7 47 17-67 38-85 (137)
370 2gou_A Oxidoreductase, FMN-bin 23.9 1.6E+02 0.0053 19.2 5.5 49 17-66 253-301 (365)
371 4amu_A Ornithine carbamoyltran 23.6 85 0.0029 20.8 3.4 27 28-63 127-153 (365)
372 3g1w_A Sugar ABC transporter; 23.6 1.3E+02 0.0043 18.1 5.6 44 19-68 53-96 (305)
373 3ia7_A CALG4; glycosysltransfe 23.6 98 0.0033 19.4 3.6 41 16-65 91-131 (402)
374 3h75_A Periplasmic sugar-bindi 23.5 1.4E+02 0.0047 18.5 4.9 58 4-68 35-96 (350)
375 1k66_A Phytochrome response re 23.5 87 0.003 16.2 4.1 38 26-67 61-101 (149)
376 3m6m_D Sensory/regulatory prot 23.5 91 0.0031 16.4 3.1 47 17-67 48-99 (143)
377 3cu2_A Ribulose-5-phosphate 3- 23.5 98 0.0033 19.0 3.5 32 5-36 187-219 (237)
378 2xij_A Methylmalonyl-COA mutas 23.4 62 0.0021 23.8 2.8 25 14-38 642-666 (762)
379 3av0_A DNA double-strand break 23.2 79 0.0027 20.5 3.2 52 16-67 49-104 (386)
380 3umv_A Deoxyribodipyrimidine p 23.2 42 0.0014 23.1 1.9 28 5-33 108-135 (506)
381 3a10_A Response regulator; pho 23.1 80 0.0027 15.6 5.0 47 17-67 35-82 (116)
382 3teb_A Endonuclease/exonucleas 23.1 68 0.0023 18.8 2.7 23 15-37 22-44 (266)
383 1vg0_A RAB proteins geranylger 23.1 78 0.0027 22.6 3.3 33 27-67 8-40 (650)
384 4ep1_A Otcase, ornithine carba 23.1 79 0.0027 20.8 3.1 27 28-63 126-152 (340)
385 3uug_A Multiple sugar-binding 23.1 1.3E+02 0.0046 18.2 6.1 43 20-68 52-94 (330)
386 2d00_A V-type ATP synthase sub 23.0 84 0.0029 16.9 2.8 50 14-68 33-82 (109)
387 1s3l_A Hypothetical protein MJ 23.0 1.2E+02 0.004 17.5 6.3 46 15-68 40-85 (190)
388 1ako_A Exonuclease III; AP-end 23.0 69 0.0024 18.8 2.7 22 16-37 15-36 (268)
389 1dnp_A DNA photolyase; DNA rep 22.7 28 0.00097 23.6 1.0 25 12-36 80-104 (471)
390 3q0i_A Methionyl-tRNA formyltr 22.7 85 0.0029 20.2 3.2 41 17-66 75-115 (318)
391 2x5e_A UPF0271 protein PA4511; 22.6 94 0.0032 19.6 3.3 44 14-64 129-172 (252)
392 3i65_A Dihydroorotate dehydrog 22.6 1.8E+02 0.0063 19.6 5.2 62 4-65 269-352 (415)
393 3g6s_A Putative endonuclease/e 22.4 79 0.0027 18.7 2.9 22 15-36 26-47 (267)
394 1vb5_A Translation initiation 22.4 1.1E+02 0.0039 19.1 3.7 44 27-70 177-223 (276)
395 3g91_A MTH0212, exodeoxyribonu 22.4 1.3E+02 0.0044 17.8 4.1 20 18-37 21-40 (265)
396 1dos_A Aldolase class II; lyas 22.3 22 0.00076 23.5 0.4 55 14-68 40-111 (358)
397 4fbw_A DNA repair protein RAD3 22.3 77 0.0026 21.3 3.0 21 16-36 41-61 (417)
398 1fmt_A Methionyl-tRNA FMet for 22.2 92 0.0031 19.9 3.3 43 16-67 70-112 (314)
399 2nxf_A Putative dimetal phosph 22.2 1.4E+02 0.0047 18.0 5.4 50 16-66 40-95 (322)
400 1u3d_A Cryptochrome 1 apoprote 22.1 56 0.0019 22.3 2.3 58 8-67 81-139 (509)
401 4f3r_A Phosphopantetheine aden 22.1 76 0.0026 18.2 2.6 23 19-41 76-98 (162)
402 3dz1_A Dihydrodipicolinate syn 22.0 94 0.0032 19.8 3.3 53 14-67 87-143 (313)
403 3t1i_A Double-strand break rep 22.0 78 0.0027 21.4 3.0 22 15-36 59-80 (431)
404 1wdu_A TRAS1 ORF2P; four-layer 22.0 74 0.0025 18.7 2.7 23 15-37 33-55 (245)
405 2isw_A Putative fructose-1,6-b 22.0 34 0.0012 22.4 1.2 52 14-65 29-82 (323)
406 2wzb_A Phosphoglycerate kinase 21.9 70 0.0024 21.7 2.7 46 21-66 47-97 (416)
407 3ctl_A D-allulose-6-phosphate 21.9 73 0.0025 19.4 2.7 45 5-51 108-152 (231)
408 3t37_A Probable dehydrogenase; 21.9 31 0.001 23.1 1.0 34 27-68 17-51 (526)
409 2ffh_A Protein (FFH); SRP54, s 21.8 1.8E+02 0.0061 19.5 4.7 23 19-41 172-194 (425)
410 3lwd_A 6-phosphogluconolactona 21.7 1.4E+02 0.0049 18.0 4.1 36 14-49 107-147 (226)
411 3r0j_A Possible two component 21.7 1.3E+02 0.0045 17.6 4.7 50 13-67 54-104 (250)
412 2yw2_A Phosphoribosylamine--gl 21.6 79 0.0027 20.5 2.9 21 15-35 50-70 (424)
413 4gew_A 5'-tyrosyl-DNA phosphod 21.5 78 0.0027 20.4 2.9 21 16-36 139-159 (362)
414 1duv_G Octase-1, ornithine tra 21.5 82 0.0028 20.6 2.9 26 28-62 100-125 (333)
415 3aek_A Light-independent proto 21.3 36 0.0012 22.8 1.2 54 14-68 101-158 (437)
416 3ck2_A Conserved uncharacteriz 21.2 94 0.0032 17.5 2.9 33 8-40 80-118 (176)
417 3kbq_A Protein TA0487; structu 21.2 1.3E+02 0.0046 17.5 3.7 30 3-34 36-69 (172)
418 3lua_A Response regulator rece 21.0 26 0.0009 18.4 0.5 48 17-67 39-90 (140)
419 3l1w_A Uncharacterized protein 20.9 81 0.0028 18.5 2.7 21 16-36 24-44 (257)
420 3u7q_B Nitrogenase molybdenum- 20.8 2.1E+02 0.0073 19.7 5.1 47 10-65 421-470 (523)
421 2yrx_A Phosphoribosylglycinami 20.7 93 0.0032 20.5 3.2 22 15-36 71-92 (451)
422 3dm5_A SRP54, signal recogniti 20.6 1.9E+02 0.0067 19.5 4.7 24 19-42 174-197 (443)
423 4h1s_A 5'-nucleotidase; hydrol 20.5 1E+02 0.0035 20.9 3.4 43 17-65 74-118 (530)
424 2r14_A Morphinone reductase; H 20.4 1.9E+02 0.0065 18.9 5.9 49 17-65 258-306 (377)
425 1ihn_A Hypothetical protein MT 20.4 1.1E+02 0.0039 16.5 3.0 14 26-39 60-73 (113)
426 16pk_A PGK, 3-phosphoglycerate 20.3 1.3E+02 0.0046 20.4 3.8 47 21-67 44-109 (415)
427 3gve_A YFKN protein; alpha-bet 20.3 1.8E+02 0.0062 18.7 6.0 52 14-65 191-248 (341)
428 1mkz_A Molybdenum cofactor bio 20.3 1.3E+02 0.0046 17.2 4.4 32 3-34 41-76 (172)
429 2qvg_A Two component response 20.3 1E+02 0.0036 15.9 4.8 38 26-67 58-98 (143)
430 4fzr_A SSFS6; structural genom 20.2 1.7E+02 0.0059 18.4 5.0 38 18-65 114-151 (398)
431 3crn_A Response regulator rece 20.1 1E+02 0.0035 15.8 4.9 50 13-67 34-84 (132)
432 3tqq_A Methionyl-tRNA formyltr 20.1 1E+02 0.0035 19.8 3.1 41 17-66 70-110 (314)
No 1
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.83 E-value=2.7e-20 Score=111.20 Aligned_cols=74 Identities=41% Similarity=0.820 Sum_probs=58.9
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCCCCCCCC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEHHKHKNF 76 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~~~~~~~ 76 (81)
|+++++.+..|++.++|+++++++++||||||+++++.+.++++||++++|+++++||||+||..........|
T Consensus 100 g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~~~~~~~~~~p~ 173 (175)
T 2gm3_A 100 GVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRNADETPSDPA 173 (175)
T ss_dssp TCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEECCGGGSCSSTT
T ss_pred CCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEcCCcCCCCCCCC
Confidence 57788888999999999999999999999999999999999999999999999999999999987655544444
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.82 E-value=6.3e-20 Score=108.25 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=61.9
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
|+++++.+..|++.++|+++|+++++||||||+++++++.++++||++++|+++++||||++|++
T Consensus 96 g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~~ 160 (162)
T 1mjh_A 96 GFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRK 160 (162)
T ss_dssp TCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCC
T ss_pred CCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeCC
Confidence 67788888899999999999999999999999999999999999999999999999999999865
No 3
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.80 E-value=1.5e-19 Score=107.62 Aligned_cols=66 Identities=27% Similarity=0.423 Sum_probs=61.7
Q ss_pred cce-EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVN-AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~-~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+++ +++.+..|++.++|+++|++.++||||||+++++.+.++++||++++|+++++||||+||++.
T Consensus 94 gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 94 GAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp TCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC-
T ss_pred CCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCC
Confidence 566 888899999999999999999999999999999999999999999999999999999999654
No 4
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.79 E-value=2.1e-19 Score=104.21 Aligned_cols=63 Identities=30% Similarity=0.536 Sum_probs=60.2
Q ss_pred cc-eEEEEEecCCHHHHHHH-HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QV-NAQTLILDGDARDVICQ-AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v-~~~~~~~~g~~~~~I~~-~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|+ ++++.+..|++.++|++ +++++++||||||+++++.+.++++||++++++++++||||+||
T Consensus 82 g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 82 SAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp SCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred CCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 56 78889999999999999 99999999999999999999999999999999999999999996
No 5
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.79 E-value=1.8e-19 Score=103.91 Aligned_cols=63 Identities=40% Similarity=0.691 Sum_probs=58.9
Q ss_pred cc-eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QV-NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v-~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|+ ++++.+..|++.++|.++++++++||||||+++++++.++++||++++++++++||||++|
T Consensus 74 g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 74 GVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp CCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred CCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 45 5667788999999999999999999999999999999999999999999999999999996
No 6
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.79 E-value=3.2e-19 Score=106.02 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=60.5
Q ss_pred cceEEE--EEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCCC
Q 038513 3 QVNAQT--LILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 3 ~v~~~~--~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~~ 70 (81)
|+++++ .+..|++.++|+++|+++++||||||+++++.+.++++||++++|+++++||||+||.....
T Consensus 91 g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~~~~ 160 (170)
T 2dum_A 91 FRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDEN 160 (170)
T ss_dssp TTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCCCCC
T ss_pred CCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccCCcc
Confidence 566777 88899999999999999999999999999999999999999999999999999999976543
No 7
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.78 E-value=8.8e-19 Score=101.26 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=58.2
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++++++.+..|++.++|.++++++++||||||+++ +++.++++||++++++++++||||+||
T Consensus 82 ~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp GGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred CCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 45678889999999999999999999999999995 889999999999999999999999996
No 8
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.78 E-value=8e-19 Score=101.71 Aligned_cols=62 Identities=32% Similarity=0.538 Sum_probs=58.4
Q ss_pred cceE---EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 3 QVNA---QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 3 ~v~~---~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
|+++ ++.+..|++.++|+++++++++||||||+++++.+.++++||++++++++++||||+|
T Consensus 83 g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 83 GVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp TCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred CCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 4555 8889999999999999999999999999999999999999999999999999999986
No 9
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.77 E-value=7.7e-19 Score=102.32 Aligned_cols=62 Identities=34% Similarity=0.535 Sum_probs=50.4
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+++.+..|++.++|+++++++++||||||+++++.+. +++||++++++++++||||+||++.
T Consensus 88 ~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~~ 149 (150)
T 3tnj_A 88 AHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLRD 149 (150)
T ss_dssp GGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECCC
T ss_pred ceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCCC
Confidence 3567889999999999999999999999999999999 9999999999999999999999753
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.76 E-value=2.4e-18 Score=101.70 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=57.1
Q ss_pred cceEEE--EEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQT--LILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~~--~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++++++ .+..|++.++|+++|+++++||||||+++++++.++++||++++++++++||||+|+
T Consensus 91 g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 91 GAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp TCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred CCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 444544 456799999999999999999999999999999999999999999999999999986
No 11
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.75 E-value=4e-18 Score=100.01 Aligned_cols=62 Identities=26% Similarity=0.426 Sum_probs=57.4
Q ss_pred cc-eEEEEEec-CCHHHHHHHH-HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QV-NAQTLILD-GDARDVICQA-VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v-~~~~~~~~-g~~~~~I~~~-a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|+ .+++.+.. |++.++|+++ |+++++||||||+++++++. .++||++++++++++||||+||
T Consensus 92 g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 92 GVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp TCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEEEC
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEEeC
Confidence 45 47888888 9999999999 99999999999999999997 5899999999999999999996
No 12
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.75 E-value=2.8e-18 Score=98.76 Aligned_cols=60 Identities=27% Similarity=0.466 Sum_probs=57.5
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|+++++.+..|++.++|.++++ ++||||||+++++.+.+++ ||++++++++++||||+||
T Consensus 79 g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 79 GINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp TCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred CCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 6788899999999999999999 9999999999999999999 9999999999999999996
No 13
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.69 E-value=3.2e-17 Score=104.44 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=58.3
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++.+..|++.++|.++++++++||||||+++++++.++++||++++++++++||||++|+.
T Consensus 216 ~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 216 EQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp TTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCH
T ss_pred ceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCC
Confidence 45677889999999999999999999999999999999999999999999999999999864
No 14
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.69 E-value=5e-17 Score=103.57 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=62.6
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
++++++.+..|++.++|.+++++.++||||||+++++++.++++||++++++++++||||++|++.
T Consensus 227 ~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 227 GIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp TCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT
T ss_pred CCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCC
Confidence 567888889999999999999999999999999999999999999999999999999999999764
No 15
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.67 E-value=2.5e-16 Score=100.99 Aligned_cols=63 Identities=27% Similarity=0.461 Sum_probs=59.4
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
++++++.+..|++.++|+++++ ++||||||+++++++.++++||++++|+++++||||++|+.
T Consensus 245 ~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 245 NVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp TSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred CCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 6788888999999999999998 99999999999999999999999999999999999999864
No 16
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.66 E-value=3.7e-16 Score=100.17 Aligned_cols=67 Identities=13% Similarity=0.177 Sum_probs=61.0
Q ss_pred ccceEEEEEe-cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 2 VQVNAQTLIL-DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 2 ~~v~~~~~~~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.|+++++.+. .|++.+.|.++++++++||||||+++.+.+.++++||++++++++++||||++|...
T Consensus 85 ~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 85 AGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKE 152 (319)
T ss_dssp TTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSC
T ss_pred cCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcc
Confidence 3678899988 899999999999999999999999999999999999999999999999999999764
No 17
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.66 E-value=5.9e-17 Score=93.44 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=54.8
Q ss_pred ceE-EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 4 VNA-QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 4 v~~-~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+++ ++.+..|++.++|+++|+++++||||||++ ++.+.+ +||++++++++++||||++|++.
T Consensus 78 ~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 78 YPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp SCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred CCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 444 567778999999999999999999999999 888777 38999999999999999998653
No 18
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.65 E-value=1.2e-16 Score=102.47 Aligned_cols=64 Identities=28% Similarity=0.476 Sum_probs=59.4
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
++..+..|++.++|+++++++++||||||+++++++.++++||++++|+++++||||++|+...
T Consensus 245 ~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~~ 308 (319)
T 3olq_A 245 EKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDGF 308 (319)
T ss_dssp GGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTTC
T ss_pred ccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCCC
Confidence 3466778999999999999999999999999999999999999999999999999999998653
No 19
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.65 E-value=5.1e-16 Score=97.58 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=60.1
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCC-CCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLG-KVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~-~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
|+++++.+..|++.+.|.++ ++++||||||+++++ .+.++++||++++++++++||||++|+...
T Consensus 87 g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~~ 152 (268)
T 3ab8_A 87 GVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEPV 152 (268)
T ss_dssp TCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSCC
T ss_pred CCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCCC
Confidence 57788888999999999999 779999999999999 999999999999999999999999997643
No 20
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.64 E-value=9.8e-16 Score=98.25 Aligned_cols=65 Identities=28% Similarity=0.426 Sum_probs=61.1
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
++++++.+..|++.++|+++++ ++||||||+++++.+.++++||++++++++++||||++|....
T Consensus 100 ~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~ 164 (309)
T 3cis_A 100 PPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDS 164 (309)
T ss_dssp CSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTCC
T ss_pred CceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCcc
Confidence 7889999999999999999987 8999999999999999999999999999999999999997653
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.63 E-value=1.7e-15 Score=96.47 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=61.2
Q ss_pred cceEEEEEe-cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLIL-DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|+++++.+. .|++.+.|.+++++.++||||||+++++.+.++++||++++++++++||||++|+..
T Consensus 64 ~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~~ 130 (290)
T 3mt0_A 64 GYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTAR 130 (290)
T ss_dssp TCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCCS
T ss_pred CCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCCC
Confidence 678888887 579999999999999999999999999999999999999999999999999999543
No 22
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.57 E-value=2.8e-15 Score=86.14 Aligned_cols=52 Identities=17% Similarity=-0.012 Sum_probs=48.5
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++++.+..|++.++|+++++++++||||||++++ |++++++++++||||++|
T Consensus 87 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 87 IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEECC
T ss_pred cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEeeC
Confidence 5677788999999999999999999999999976 999999999999999986
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.55 E-value=2.7e-15 Score=95.53 Aligned_cols=65 Identities=29% Similarity=0.413 Sum_probs=59.3
Q ss_pred cceEEE-EEe-cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 3 QVNAQT-LIL-DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 3 ~v~~~~-~~~-~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
|+++++ .+. .|++.++| ++++.++||||||+++.+.+.++++||++++++++++||||++|+...
T Consensus 99 g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~ 165 (294)
T 3loq_A 99 GIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDMV 165 (294)
T ss_dssp TCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCTT
T ss_pred CCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCccc
Confidence 567777 667 89999999 999999999999999999999999999999999999999999997753
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.48 E-value=6.1e-14 Score=88.07 Aligned_cols=57 Identities=33% Similarity=0.528 Sum_probs=52.9
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|+++++.+..|++.++|.++++++ ||||||+ ++.++++||++++++++++||||++|
T Consensus 212 ~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 212 GVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp TCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred CCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 577888888999999999999987 9999999 68899999999999999999999986
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=94.56 E-value=0.14 Score=29.67 Aligned_cols=61 Identities=11% Similarity=-0.020 Sum_probs=50.6
Q ss_pred cceEE-EEEecCCHHHHHHHHHHhcC--CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 3 QVNAQ-TLILDGDARDVICQAVEQMH--IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 3 ~v~~~-~~~~~g~~~~~I~~~a~~~~--~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
|+.++ ..+..++|..++.....+.+ +|=||+.+..+ ...+||.-..+++.=+ ..+||+-+-
T Consensus 71 G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~DwasrAr~-~gvPVlhl~ 134 (138)
T 2iel_A 71 GIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRLDVHTQAER-FGLPVIHVI 134 (138)
T ss_dssp TCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHTTHHHHGGG-GSSCEEEEE
T ss_pred CCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhccHHHHHHh-cCCCEEEEe
Confidence 55666 88899999999999999999 99999999865 4667776677777777 899999764
No 26
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=94.36 E-value=0.19 Score=27.23 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccC----CCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRG----LGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~----~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...+.|.+++++++++.||+|-.- .........-..++++-.. +.||..+.+.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECCC
Confidence 457889999999999999999432 1111111223456777766 8999998654
No 27
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=89.78 E-value=0.23 Score=28.59 Aligned_cols=55 Identities=9% Similarity=-0.003 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC----CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL----GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~----~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...+.|.+++++++++.||+|-.-+ ........-..++++-...+.||..+.+.-
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DERl 98 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 3578999999999999999994421 111111112456666666789999997643
No 28
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=88.60 E-value=2.6 Score=25.10 Aligned_cols=59 Identities=14% Similarity=0.275 Sum_probs=39.7
Q ss_pred cceEEEEEecC-CHHHHHHHHHH---hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVE---QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
|++++..+..- ...+.+.++++ +.+++.||.++.+...+ +.-+.-.++.||+-||....
T Consensus 32 gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~~ 94 (166)
T 3oow_A 32 GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHL--------PGMVAAKTTLPVLGVPVKSS 94 (166)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCH--------HHHHHHTCSSCEEEEECCCT
T ss_pred CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhh--------HHHHHhccCCCEEEeecCcC
Confidence 45666666654 33455555554 45689999998865544 45667788999999997543
No 29
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=88.54 E-value=2.5 Score=25.47 Aligned_cols=58 Identities=10% Similarity=0.260 Sum_probs=39.8
Q ss_pred cceEEEEEecC-CHHHHHHHH---HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQA---VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~---a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- ...+.+.++ +++.+++.|+.|+.+...+ +.-+...++.||+-||...
T Consensus 49 gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahL--------pGvvAa~T~~PVIGVPv~s 110 (181)
T 4b4k_A 49 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHL--------PGMVAAKTNLPVIGVPVQS 110 (181)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCH--------HHHHHTTCCSCEEEEECCC
T ss_pred CCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccc--------hhhHHhcCCCCEEEEecCC
Confidence 46677777665 233444444 4557889999998876554 4456678899999999754
No 30
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=88.23 E-value=2.6 Score=25.28 Aligned_cols=58 Identities=14% Similarity=0.247 Sum_probs=39.2
Q ss_pred cceEEEEEecCC-HHHH---HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDGD-ARDV---ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g~-~~~~---I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..-. ..+. +.+.+++.+++.||.++.+...+ ..-+.-.+++||+-||-..
T Consensus 39 gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahL--------pgvvA~~t~~PVIgVPv~~ 100 (173)
T 4grd_A 39 GVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHL--------PGMLAAKTTVPVLGVPVAS 100 (173)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCH--------HHHHHHHCCSCEEEEEECC
T ss_pred CCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccc--------hhhheecCCCCEEEEEcCC
Confidence 456666666542 3344 44445557899999998876544 4456678899999998543
No 31
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=87.53 E-value=0.27 Score=28.62 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCC-CCCcee---cCcHHHHHhhhCCccEEEECCCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLG-KVKRAF---LGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~-~~~~~~---~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
....+.|.++++++++|.||+|-.-.. +....- .-.++..+....++||..+.+..
T Consensus 41 ~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~ 100 (150)
T 1vhx_A 41 DYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERL 100 (150)
T ss_dssp BCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCC
Confidence 346899999999999999999944211 111000 11234455666689999997654
No 32
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=87.36 E-value=2.8 Score=25.13 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=39.5
Q ss_pred cceEEEEEecC-C---HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-D---ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~---~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- . ....+.+.+++.+++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 34 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 95 (174)
T 3lp6_A 34 DIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHL--------PGMVAAATPLPVIGVPVPL 95 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEEECC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhh--------HHHHHhccCCCEEEeeCCC
Confidence 45666666554 2 244445556667899999998866544 4456778999999998653
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=87.06 E-value=3.2 Score=24.47 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=41.5
Q ss_pred cceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 3 QVNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
|++++..+..- ...+.+.+++++...+.||.++.+...+ +.-+.-.+++||+-||.
T Consensus 26 gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~L--------pgvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 26 GVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHL--------PGVVASLTTKPVIAVPV 82 (157)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCH--------HHHHHTTCSSCEEEEEE
T ss_pred CCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhh--------HHHHHhccCCCEEEecC
Confidence 45666666654 4567778888876669999998876544 44667788999999987
No 34
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=86.82 E-value=3.5 Score=24.62 Aligned_cols=58 Identities=10% Similarity=0.139 Sum_probs=39.3
Q ss_pred cceEEEEEecC-CH---HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DA---RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~---~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- .. ...+.+.+++.+++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 33 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 94 (169)
T 3trh_A 33 GIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHL--------AGTIAAHTLKPVIGVPMAG 94 (169)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCH--------HHHHHHTCSSCEEEEECCC
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhh--------HHHHHhcCCCCEEEeecCC
Confidence 45666666654 22 33444445667899999988865544 4466778899999999764
No 35
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=85.58 E-value=2.8 Score=25.33 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=39.1
Q ss_pred cceEEEEEecC-CHHHHHHHHH---HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAV---EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a---~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- ...+.+.+++ ++.+++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 40 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 40 GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHL--------PGMVASITHLPVIGVPVKT 101 (183)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEEECC
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCccccc--------HHHHHhccCCCEEEeeCCC
Confidence 45666666654 3334445554 456789999998876544 4456778999999999754
No 36
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=85.01 E-value=2.9 Score=24.77 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=39.0
Q ss_pred cceEEEEEecC-CHHHHHHHHH---HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAV---EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a---~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- ...+.+.+++ ++.+++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 30 gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 91 (163)
T 3ors_A 30 EIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHL--------PGMVASLTTLPVIGVPIET 91 (163)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEEECC
T ss_pred CCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhh--------HHHHHhccCCCEEEeeCCC
Confidence 45666666654 3344555554 456789999998866544 4456678999999998654
No 37
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=84.43 E-value=4.8 Score=24.11 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=39.4
Q ss_pred cceEEEEEecC-CHHHHHHHHH---HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAV---EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a---~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- ...+.+.+++ ++.+++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 39 Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 100 (174)
T 3kuu_A 39 NVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHL--------PGMLAAKTLVPVLGVPVQS 100 (174)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCH--------HHHHHHTCSSCEEEEEECC
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhh--------HHHHHhccCCCEEEeeCCC
Confidence 45666666654 3345555554 456789999988866544 4466778899999998653
No 38
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=83.86 E-value=5.1 Score=23.93 Aligned_cols=58 Identities=12% Similarity=0.279 Sum_probs=39.9
Q ss_pred cceEEEEEecC-CHHHHHHHHHH---hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVE---QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- ...+.+.++++ +.+++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 38 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 99 (170)
T 1xmp_A 38 NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHL--------PGMVAAKTNLPVIGVPVQS 99 (170)
T ss_dssp TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHTTCCSCEEEEEECC
T ss_pred CCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhh--------HHHHHhccCCCEEEeeCCC
Confidence 45666666654 34455566654 45689999998876544 4466778899999999754
No 39
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=82.67 E-value=2.4 Score=26.95 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
-+++.++++++|++|+.+....... ..-++.++....+|.+++.+.
T Consensus 55 ~~~~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 55 MALDIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHHHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSSSCEEEEEEG
T ss_pred HhhhhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCCCCEEEEcCC
Confidence 3456679999999999876433221 345788999999999999654
No 40
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=81.95 E-value=3.9 Score=25.78 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+..|...+++.++|+|++|.+..+... +.+.-++......|.+
T Consensus 101 a~~La~~i~~~~~dlVl~G~~s~d~~~----~~v~p~lA~~L~~~~v 143 (264)
T 1o97_C 101 GRILTEVIKKEAPDMVFAGVQSSDQAY----ASTGISVASYLNWPHA 143 (264)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCTTTCC----CCHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCch----hhHHHHHHHHhCCCcc
Confidence 446677777778999999988654322 3344455555555444
No 41
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=81.86 E-value=6.5 Score=23.72 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=39.7
Q ss_pred cceEEEEEecC-CHHHHHHHHHH---hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVE---QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~---~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- ...+.+.++++ +.+++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 48 Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 109 (182)
T 1u11_A 48 EIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHL--------PGMCAAWTRLPVLGVPVES 109 (182)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH--------HHHHHHHCSSCEEEEEECC
T ss_pred CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhh--------HHHHHhccCCCEEEeeCCC
Confidence 45666666654 34455556654 45689999998876544 4466778899999999654
No 42
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=81.10 E-value=4.3 Score=25.47 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+..|...+++.++|+|++|.+..++.. +.+.-.+......|.+
T Consensus 105 A~~La~~i~~~~~dlVl~G~~s~d~d~----~~v~p~lA~~L~~~~v 147 (255)
T 1efv_B 105 ARVLAKLAEKEKVDLVLLGKQAIDDDC----NQTGQMTAGFLDWPQG 147 (255)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhcCCCEEEEeCcccCCch----hhHHHHHHHHhCCCcc
Confidence 446777777778999999988754332 3455566666665544
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=80.45 E-value=4.3 Score=25.39 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+..|...+++.++|+|++|.+..++.. +.+.-.+......|.+
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~d~~~----~~v~p~lA~~L~~~~v 144 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAIDNDM----NATGQMLAAILGWAQA 144 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCch----hhHHHHHHHHhCCCcc
Confidence 446667777778899999988654332 3444555555555544
No 44
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=78.05 E-value=2.5 Score=27.83 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+..+.++..+ ++|+||+|-... |-...+++..+.+. ++.+++|++.|.+-.
T Consensus 166 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N~~ 219 (332)
T 2ppv_A 166 EPMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSNVM 219 (332)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECCSB
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCCC
Confidence 45667777777 699999997753 33444555566666 678999999997643
No 45
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=77.58 E-value=2.9 Score=27.36 Aligned_cols=52 Identities=10% Similarity=0.170 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+..+.++..+ ++|+||+|-... |-...+++..+.+. ++++++|++.|.+-.
T Consensus 167 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl~ 220 (323)
T 2o2z_A 167 KPLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNVM 220 (323)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCSB
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCCC
Confidence 35667777777 699999997753 33445567777777 677899999997653
No 46
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=77.24 E-value=1.5 Score=28.95 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..+.++..+ ++|+||+|-.+. |-...+++..+.+. ++++++|++.|..-
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~Nl 229 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICNI 229 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECCS
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeCC
Confidence 34556677776 699999997753 34445566666666 67789999999753
No 47
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=76.83 E-value=9.2 Score=22.54 Aligned_cols=58 Identities=10% Similarity=0.166 Sum_probs=38.6
Q ss_pred cceEEEEEecC-CHHHHHHHHH---Hhc-CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAV---EQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a---~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
|++++..+..- ...+.+.+++ ++. +++.||.++.+...+ +.-+.-.++.||+-||...
T Consensus 29 gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~L--------pgvvA~~t~~PVIgVP~~~ 91 (159)
T 3rg8_A 29 GIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNAL--------SGFVDGFVKGATIACPPPS 91 (159)
T ss_dssp TCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCH--------HHHHHHHSSSCEEECCCCC
T ss_pred CCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhh--------HHHHHhccCCCEEEeeCCC
Confidence 45666666654 3344555554 433 589999998866544 4456778999999999653
No 48
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=76.36 E-value=4.4 Score=22.74 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--CccEEEEC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--VCPILIVK 65 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--~~Pvlvv~ 65 (81)
..+.+.+.+.+.++++|+|.+......... .+....+.+-+.. ++++++=-
T Consensus 40 ~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 40 LSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp EECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEEE
T ss_pred CCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEEC
Confidence 368899999999999999999987643322 2345555554432 36666553
No 49
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=75.21 E-value=11 Score=22.52 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=31.8
Q ss_pred EEEecCCHHHHHHHHHH-hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 8 TLILDGDARDVICQAVE-QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~-~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+..++..+++...-+ ..++|.|+-. |+++..+-++.++||+-++..
T Consensus 31 i~i~~~~l~~~v~~a~~~~~~~dVIISR------------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 31 PITKTASLTRASKIAFGLQDEVDAIISR------------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEEECCHHHHHHHHHHHTTTCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred eEEEECCHHHHHHHHHHhcCCCeEEEEC------------ChHHHHHHHhCCCCEEEEcCC
Confidence 34455655444332212 4678866642 888999999999999999865
No 50
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=71.53 E-value=1.7 Score=28.46 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+..+.++..+ ++|+||+|-.+. |-...+++..+.+. ++++++|++.|..
T Consensus 174 a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 174 ASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp BCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 4556667666 699999997753 34445556666666 6778999999975
No 51
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=70.51 E-value=5.1 Score=23.20 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--CccEEEEC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--VCPILIVK 65 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--~~Pvlvv~ 65 (81)
.+.+.+.+.++++++|+|.+.......... +..+.+.+-... +++|++=-
T Consensus 56 ~p~e~lv~aa~~~~~diV~lS~~~~~~~~~--~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 56 QTPEQVAMAAVQEDVDVIGVSILNGAHLHL--MKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEESSSCHHHH--HHHHHHHHHHTTCTTSCEEEEE
T ss_pred CCHHHHHHHHHhcCCCEEEEEeechhhHHH--HHHHHHHHHhcCCCCCEEEEeC
Confidence 588999999999999999998874432211 223333333322 37777653
No 52
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=70.32 E-value=15 Score=24.98 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=37.9
Q ss_pred cceEEEEEecC-C---HHHHHHHHHHhcCC-CEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 3 QVNAQTLILDG-D---ARDVICQAVEQMHI-DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 3 ~v~~~~~~~~g-~---~~~~I~~~a~~~~~-dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
|++++..+..- . ....+.+.+++.++ +.||.++.+...+ +.-+...+++||+-||..
T Consensus 292 gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~L--------pgvva~~t~~PVIgvP~~ 353 (425)
T 2h31_A 292 GIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGL--------GPVMSGNTAYPVISCPPL 353 (425)
T ss_dssp TCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCH--------HHHHHHHCSSCEEECCCC
T ss_pred CCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccch--------HhHHhccCCCCEEEeeCc
Confidence 45666666654 2 23445555566778 6888887765444 446677889999999974
No 53
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=69.16 E-value=11 Score=23.38 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.-|.+.+.+.++++++|+|.+.......... +..+.+.+-+. .++||++--..
T Consensus 160 ~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~--~~~~i~~l~~~~~~~~v~vGG~~ 213 (258)
T 2i2x_B 160 DVPAEEVLAAVQKEKPIMLTGTALMTTTMYA--FKEVNDMLLENGIKIPFACGGGA 213 (258)
T ss_dssp ECCSHHHHHHHHHHCCSEEEEECCCTTTTTH--HHHHHHHHHTTTCCCCEEEESTT
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeeccCCHHH--HHHHHHHHHhcCCCCcEEEECcc
Confidence 3688999999999999999998865443322 12233333222 34888876543
No 54
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=66.74 E-value=6 Score=23.60 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC---CccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA---VCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~---~~Pvlvv~~~ 67 (81)
..|.+.+.+.++++++|+|.+.......... +-.+.+.+=+.. .+|+++--..
T Consensus 125 ~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~--~~~~i~~l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 125 DIEPGKFVEAVKKYQPDIVGMSALLTTTMMN--MKSTIDALIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp SBCHHHHHHHHHHHCCSEEEEECCSGGGTHH--HHHHHHHHHHTTCGGGCEEEEESTT
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccccHHH--HHHHHHHHHhcCCCCCCeEEEECCC
Confidence 3689999999999999999998764332211 122333332222 2788776443
No 55
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=66.36 E-value=16 Score=22.61 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=29.9
Q ss_pred HHHHHHHH--hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVE--QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~--~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.|.+..+ ..++|++++-..+-- ...+.-+.....+++...+||++|-..
T Consensus 119 ~~I~~~~~~l~~~~D~vlIEGagGl-~~pl~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 119 DNLTQRLHNFTKTYDLVIVEGAGGL-CVPITLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp HHHHHHHHHGGGTCSEEEEECCSCT-TCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCc-cccccccchHHHHHHHcCCCEEEEEcC
Confidence 44554433 347999998765421 111111334568899999999888544
No 56
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=66.05 E-value=8.1 Score=24.00 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+++...+.++|+|.+|....-.....+ ...+++ +..+.|+++.+..
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~~--~~v~~i-r~~~~Pivl~~y~ 70 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKAR--TLIEKV-SQYGLPIVVEPSD 70 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHHH--HHHHHH-TTSCCCEEECCSS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHh-cCCCCCEEEecCC
Confidence 45667777889999999973211121111 333444 3368999998755
No 57
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=65.01 E-value=5.8 Score=25.59 Aligned_cols=46 Identities=4% Similarity=0.131 Sum_probs=30.4
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE-EC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI-VK 65 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv-v~ 65 (81)
+++.+.+.+.|.|++|+.+-..+... +..+.+.+=+..+.|+++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECC
Confidence 56666777999999994433222221 245555666668999999 87
No 58
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=64.37 E-value=11 Score=21.84 Aligned_cols=53 Identities=15% Similarity=0.042 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCC-CceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKV-KRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+.+++.+++.++|+|++..-=-... .....- ..-+.+...++|+++|+..-
T Consensus 20 ~~~~~~~~~~~~~~D~vi~~GDl~~~~~~~~~~~-~~~~~l~~~~~pv~~v~GNH 73 (228)
T 1uf3_A 20 ALEKFVKLAPDTGADAIALIGNLMPKAAKSRDYA-AFFRILSEAHLPTAYVPGPQ 73 (228)
T ss_dssp HHHHHHTHHHHHTCSEEEEESCSSCTTCCHHHHH-HHHHHHGGGCSCEEEECCTT
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHH-HHHHHHHhcCCcEEEECCCC
Confidence 346777777777999998765421111 000000 12233455678999997543
No 59
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=63.90 E-value=22 Score=21.57 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...+.+..++.++|.|.+-............-....++.+..++||++.-
T Consensus 37 ~~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~G 86 (247)
T 3tdn_A 37 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASG 86 (247)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEES
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeC
Confidence 45677777788999998765433322221112456778888899999873
No 60
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=63.57 E-value=14 Score=19.15 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+.. +..+..+++.+|++++...-.. ... -...+.+-...++|++++-.
T Consensus 33 ~~~~-~al~~~~~~~~dlii~D~~~p~-~~g---~~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 33 HDGN-EAVEMVEELQPDLILLDIMLPN-KDG---VEVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp SSHH-HHHHHHHTTCCSEEEEETTSTT-THH---HHHHHHHHTTCCSCEEEEEE
T ss_pred CCHH-HHHHHHhhCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCEEEEEC
Confidence 3444 4455667779999999866322 111 02344454556789988854
No 61
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=63.11 E-value=17 Score=21.95 Aligned_cols=44 Identities=7% Similarity=-0.009 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
-...|++.|+++++-+|.|+..++.+. ..+-.++.++.++..-.
T Consensus 137 E~~~Lld~A~~~naqvvll~~~~RqG~------GnAl~vl~~agv~t~~~ 180 (189)
T 2l8b_A 137 ETLTLLDGAARHNVQVLITDSGQRTGT------GSALMAMKDAGVNTYRW 180 (189)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSTTTCS------HHHHHHHHHTTCCCCSS
T ss_pred HHHHHHHHHHhcCCEEEEeCCcccccC------CCHHHHHHhCCCceEEe
Confidence 345688999999999999999976655 55678888888765443
No 62
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=62.23 E-value=8.6 Score=23.85 Aligned_cols=47 Identities=6% Similarity=0.043 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++.+.+.+.|.|.+|.+..-.... +-...+++-+ .+.|+++.|...
T Consensus 23 ~~~~~~~~GtD~i~vGGs~gvt~~~--~~~~v~~ik~-~~~Pvvlfp~~~ 69 (228)
T 3vzx_A 23 QLEILCESGTDAVIIGGSDGVTEDN--VLRMMSKVRR-FLVPCVLEVSAI 69 (228)
T ss_dssp HHHHHHTSSCSEEEECCCSCCCHHH--HHHHHHHHTT-SSSCEEEECSCG
T ss_pred HHHHHHHcCCCEEEECCcCCCCHHH--HHHHHHHhhc-cCCCEEEeCCCH
Confidence 4444567799999999853222211 1233444444 789999998763
No 63
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=61.98 E-value=7.8 Score=24.62 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCEEEEccc-CCC-CCCceecCcHHHHHhhhCC--ccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR-GLG-KVKRAFLGSVSDYCAHHAV--CPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~-~~~-~~~~~~~gs~~~~vi~~~~--~Pvlvv~~~ 67 (81)
..+.+++.+++.++|+|+++.- =-. .......-....+.+.... +|+++++..
T Consensus 49 ~l~~lv~~~~~~~~D~vliaGD~l~d~~~~~~~~~~~~~~~l~~L~~~~pv~~i~GN 105 (336)
T 2q8u_A 49 ALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGN 105 (336)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC-
T ss_pred HHHHHHHHHHHhCCCEEEECCccccCCCCCCHHHHHHHHHHHHHHHhcCCEEEECCC
Confidence 4678888899999998887644 111 1100000001234444444 899999754
No 64
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=61.61 E-value=4.1 Score=24.78 Aligned_cols=52 Identities=2% Similarity=-0.071 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHhcCCCEEEE--cccCCCCCCceecCcHHHHHhhhC---CccEEEECC
Q 038513 13 GDARDVICQAVEQMHIDLLVV--GSRGLGKVKRAFLGSVSDYCAHHA---VCPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVm--G~~~~~~~~~~~~gs~~~~vi~~~---~~Pvlvv~~ 66 (81)
.-|.+.+++.++++++|+|.+ +..-..... .+..+.+.+-+.. ++|+++--.
T Consensus 129 ~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 129 DVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEESS
T ss_pred CCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEECC
Confidence 358999999999999999999 544222111 1233344444432 477777543
No 65
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=61.46 E-value=23 Score=21.05 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+.++.+.+.++|.|++......+...-+--....++.+..++|+++.-
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~G 205 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASG 205 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeC
Confidence 3445666777999998765544333221211345667777789988764
No 66
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=60.46 E-value=19 Score=19.85 Aligned_cols=49 Identities=8% Similarity=0.117 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+..+. .+..++..+|+|++...-.. ... -...+.+-...++|++++-.
T Consensus 58 ~~~~~a-l~~l~~~~~dlvilD~~l~~-~~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 58 KDGLEA-VEKAIELKPDVITMDIEMPN-LNG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp SSHHHH-HHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHHSCCEEEEEES
T ss_pred CCHHHH-HHHhccCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCceEEEEec
Confidence 344444 44555668999999876332 111 12345666666789888854
No 67
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=58.23 E-value=7 Score=25.99 Aligned_cols=55 Identities=7% Similarity=-0.093 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPKE 69 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~~ 69 (81)
..+.+.+.+++.++|-+|.-...--...........+.+.+...+|+|.+.....
T Consensus 322 r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D~~ 376 (408)
T 3o3m_A 322 MTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGDQA 376 (408)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEECSS
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 4567888899999999998776544333322223344666888999999975543
No 68
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=57.93 E-value=5 Score=26.93 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..+.|.+..+..++++|++-+.-.+.+-..=+.+++..+-...++||+.++.+.
T Consensus 84 kL~~~i~~~~~~~~P~~I~v~~TC~~~iIGdDi~~v~~~~~~~~~ipVi~v~~~G 138 (460)
T 2xdq_A 84 ELKRLCLEIKRDRNPSVIVWIGTCTTEIIKMDLEGLAPKLEAEIGIPIVVARANG 138 (460)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECHHHHHTTCCHHHHHHHHHHHHSSCEEEEECCT
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCHHHHHhhCHHHHHHHHhhccCCcEEEEecCC
Confidence 3567788888889999999988765544333333444444334489999998654
No 69
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=57.40 E-value=23 Score=22.44 Aligned_cols=41 Identities=22% Similarity=0.108 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..++.|.+.+...+.+|+++|.. ||...+..+....|++-=
T Consensus 118 ~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~~E 158 (252)
T 1xw8_A 118 QLADAIARAVYACDPALILVGLA----------GSELIRAGKQYGLTTREE 158 (252)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEET----------TSHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEEEE
Confidence 46788999999999999999954 788889999999998754
No 70
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=57.21 E-value=31 Score=21.15 Aligned_cols=51 Identities=16% Similarity=0.309 Sum_probs=33.9
Q ss_pred EEEEEecCCHHHHHHHH---HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 6 AQTLILDGDARDVICQA---VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~---a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+..+..+...+++... ....++|.|+-. |+++..+-++.++||+-++...
T Consensus 39 ~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~vs~ 92 (225)
T 2pju_A 39 ANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIKPSG 92 (225)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEECCCH
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEecCCH
Confidence 44556566655444432 223458866643 8889999999999999998653
No 71
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=56.77 E-value=8.5 Score=24.16 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=21.3
Q ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEc
Q 038513 8 TLILDGDARDVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~~~~~dliVmG 34 (81)
.....=++.+++++.|.+.++|||+.=
T Consensus 40 ~I~~alD~t~~vi~eAi~~gadlIitH 66 (267)
T 2fyw_A 40 RVMVALDIREETVAEAIEKGVDLIIVK 66 (267)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred EEEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence 334444788999999999999999873
No 72
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=56.68 E-value=22 Score=22.18 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..++.+.+.++|.|.+|....-.... +-...+++-+ .+.|+++.|...
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~--~~~~v~~ik~-~~~Piil~p~~~ 74 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDN--VIHLMSKIRR-YPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHH--HHHHHHHHTT-SCSCEEEECCCS
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHH--HHHHHHHhcC-cCCCEEEecCCH
Confidence 34455567799999999853222222 1233444444 789999998753
No 73
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=56.03 E-value=11 Score=19.28 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEE
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIV 64 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv 64 (81)
+...+..++..+|++++...-.+.... -...+.+-+. ..+|++++
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g---~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNG---YLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBH---HHHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCH---HHHHHHHhcCccccCCCEEEE
Confidence 334445566789999998663211111 1234444443 46999998
No 74
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=55.92 E-value=15 Score=22.84 Aligned_cols=48 Identities=8% Similarity=0.117 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+++...+.++|+|.+|...--.....+ ...+++ +..++|+++.+..
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~~~--~~v~~i-r~~~~Pivlm~y~ 70 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDNVL--RMMSKV-RRFLVPCVLEVSA 70 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHHHH--HHHHHH-TTSSSCEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHh-hCcCCCEEEecCc
Confidence 45677778889999999973111111111 233344 3367999987654
No 75
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=55.58 E-value=32 Score=20.89 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
...+.+...+.++|.|.+......+......-.....+.+..++|+++.
T Consensus 32 ~~~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ 80 (266)
T 2w6r_A 32 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 80 (266)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEE
Confidence 4456666677799999985433322221111244567778888999985
No 76
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=55.51 E-value=36 Score=23.49 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=31.8
Q ss_pred HHHHHHHH-HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAV-EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a-~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...+.+.+ ++.++|.|++=.+.-++ .+..-.+++..++|||+....
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~TFs~------a~~~i~~l~~l~~PvL~~~~q 106 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHTFSP------AKMWINGLTMLNKPLLQFHTQ 106 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCSCCC------THHHHHHHHHCCSCEEEEECC
T ss_pred HHHHHHHhccccCCcEEEEeCCcCcc------HHHHHHHHHhcCCCEEEEeCC
Confidence 34445555 56689999987664332 445668889999999998643
No 77
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=55.33 E-value=22 Score=19.14 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..++ .+..++..+|+|++...-.. ...+ ...+.+-.. ..+|++++-..
T Consensus 45 ~~~~~a-~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 45 RDATQA-LQLLASREVDLVISAAHLPQ-MDGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp SSHHHH-HHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred CCHHHH-HHHHHcCCCCEEEEeCCCCc-CcHH---HHHHHHHhHCCCCeEEEEECC
Confidence 344444 45556778999999876332 1111 223333333 35899988654
No 78
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=55.20 E-value=28 Score=22.11 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=37.0
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..++ +.+.|++.++|-+++.........+--+=..-+.|...++.|+++..-+.
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~ 140 (300)
T 3eb2_A 84 SVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQ 140 (300)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECcc
Confidence 44444 45688889999999887654332221122455788899999999997553
No 79
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=54.55 E-value=17 Score=22.15 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++.+..+++++|++|+...++ .+ +..++...+..++=+++
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~~-----IL----~~~~l~~~~~~~iNiHp 112 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFMS-----IL----PEKFVTDWHHKIINIHP 112 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCCS-----CC----CHHHHHHTTTSEEEEES
T ss_pred HHHHHHHHHhCCCEEEEeCCce-----Ee----CHHHHhhccCCeEEECc
Confidence 6677777888888888876532 11 34555555555555543
No 80
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=54.52 E-value=31 Score=22.35 Aligned_cols=57 Identities=16% Similarity=0.280 Sum_probs=35.2
Q ss_pred cceEEEEEecCC----HHHHHHHHHHhcCCCEEE-EcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 3 QVNAQTLILDGD----ARDVICQAVEQMHIDLLV-VGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 3 ~v~~~~~~~~g~----~~~~I~~~a~~~~~dliV-mG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
++++......|+ ..+.+.+.++++++|+|| +|... .+..+..+.....+|++.||..
T Consensus 58 g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs--------v~D~aK~iA~~~~~p~i~IPTT 119 (370)
T 1jq5_A 58 NIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK--------TLDTAKAVADELDAYIVIVPTA 119 (370)
T ss_dssp TCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH--------HHHHHHHHHHHHTCEEEEEESS
T ss_pred CCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH--------HHHHHHHHHHhcCCCEEEeccc
Confidence 344443445564 344566778888999988 55321 1233444444557999999965
No 81
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=54.31 E-value=2.8 Score=27.67 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...+.+.+.+++.++|-+|.-...--....+ ......+.++...+|+|.+....
T Consensus 300 ~R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~-~~~~~~~~~~~~giP~l~ie~D~ 353 (385)
T 3o3m_B 300 KRGSLIVDEVKKKDIDGVIFCMMKFCDPEEY-DYPLVRKDIEDSGIPTLYVEIDQ 353 (385)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEETTCHHHHH-HHHHHHHHHHTTTCCEEEEEECT
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCccHh-hHHHHHHHHHHCCCCEEEEEecC
Confidence 4577888999999999999877654333222 23344566688899999997544
No 82
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=54.24 E-value=20 Score=22.68 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=34.6
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (292)
T 2vc6_A 80 STAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIP 135 (292)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 44454 4577899999998887764432222111233457888899999997643
No 83
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=54.14 E-value=20 Score=18.63 Aligned_cols=46 Identities=11% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhhh-CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~-~~~Pvlvv~~~ 67 (81)
++..+..++..+|+|++...-... . | ...+.+-+. ..+|++++-..
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~~-~----g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 41 VDALELLGGFTPDLMICDIAMPRM-N----GLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHTTCCCSEEEECCC----------CHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHhcCCCCEEEEecCCCCC-C----HHHHHHHHHhcCCCCCEEEEEcC
Confidence 444555677789999998763221 1 2 223344333 34899888654
No 84
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=53.70 E-value=12 Score=24.25 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+..+.++..+ ++|+||+|-... |-...+++..+.+.|.+ + |++.|.+
T Consensus 172 ~a~p~vl~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~Al~~-s--~kV~v~n 221 (311)
T 3c3d_A 172 SISPKVLEAFE--KEENILIGPSNPITSIGPIISLPGMRELLKK-K--KVVAVSP 221 (311)
T ss_dssp CCCHHHHHHHH--HCCEEEECSSCTTTTSHHHHHSTTHHHHHHT-S--EEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhcCchhHHHHHHc-C--CEEEEcc
Confidence 35667777777 699999998753 44556667788888544 4 8887765
No 85
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=53.59 E-value=13 Score=25.75 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~~ 68 (81)
.+....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+..
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~~ 427 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLSTS---------GTTPRLVSKYRPNCPIILVTRCP 427 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSS---------SHHHHHHHHTCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCCH
Confidence 34445566788889988876653 888989888877 9999997654
No 86
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=53.58 E-value=21 Score=22.57 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=35.1
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (294)
T 2ehh_A 80 ATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIP 135 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 455554 577889999998887664432222112234457888899999998643
No 87
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=53.29 E-value=8 Score=23.96 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEc
Q 038513 14 DARDVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG 34 (81)
++.+++++.|.+.++|||+.=
T Consensus 44 D~t~~vi~eAi~~~adlIitH 64 (242)
T 2yyb_A 44 DAGEAIFRKALEEEVDFLIVH 64 (242)
T ss_dssp ECSHHHHHHHHHTTCSEEEEE
T ss_pred cCCHHHHHHHHHCCCCEEEEC
Confidence 678899999999999999873
No 88
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=53.10 E-value=15 Score=22.03 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=30.1
Q ss_pred HhcC--CCEEEEcccCCCCCCce--ecCcHHHHHh-hhCCccEEEECCCC
Q 038513 24 EQMH--IDLLVVGSRGLGKVKRA--FLGSVSDYCA-HHAVCPILIVKPPK 68 (81)
Q Consensus 24 ~~~~--~dliVmG~~~~~~~~~~--~~gs~~~~vi-~~~~~Pvlvv~~~~ 68 (81)
++.+ +|++++|+..-...... -.|+-.-.++ ++..+|++|+-+..
T Consensus 46 ~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V~a~~~ 95 (191)
T 1w2w_B 46 RTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAPKT 95 (191)
T ss_dssp HHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECCGG
T ss_pred HhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccc
Confidence 4445 99999999875433333 2677765555 55579999996543
No 89
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=52.92 E-value=42 Score=21.43 Aligned_cols=52 Identities=10% Similarity=-0.050 Sum_probs=35.2
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
+..++| .+.|++.++|-+++-........+--+=..-..|...++.|+++..
T Consensus 91 st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 91 SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 555554 5778999999998887654332221122344578888999999987
No 90
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=52.90 E-value=27 Score=19.12 Aligned_cols=47 Identities=4% Similarity=-0.063 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.++-++.++++.+|++++--.=. +.. |-..-+.++...+|++++-..
T Consensus 42 g~eAl~~~~~~~~DlvllDi~mP-~~~----G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 42 MQEALDIARKGQFDIAIIDVNLD-GEP----SYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHHHHHHHCCSSEEEECSSSS-SCC----SHHHHHHHHHTCCSSCCBCTT
T ss_pred HHHHHHHHHhCCCCEEEEecCCC-CCC----HHHHHHHHHcCCCCEEEEecC
Confidence 34445566778999999976632 222 334445667778999988643
No 91
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=52.89 E-value=19 Score=18.98 Aligned_cols=47 Identities=11% Similarity=-0.009 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~ 67 (81)
++..+..++..+|+|++...-.. ...+ ...+.+-. ...+|++++-..
T Consensus 40 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 89 (140)
T 3grc_A 40 AQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSAN 89 (140)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECTT
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEecC
Confidence 44445567778999999876322 1110 22334432 346899998654
No 92
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=52.71 E-value=21 Score=22.65 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=34.7
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 92 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 147 (301)
T 1xky_A 92 NTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVP 147 (301)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 44444 4577889999988887664433222111233457888899999998643
No 93
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=52.61 E-value=13 Score=22.55 Aligned_cols=23 Identities=4% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.+..|.+.++++++|+|++|...
T Consensus 79 ~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 79 HTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCc
Confidence 45678899999999999999864
No 94
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=52.42 E-value=20 Score=22.64 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=35.2
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 80 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 135 (289)
T 2yxg_A 80 CTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVP 135 (289)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 445544 577888999998887664432222112234467888899999998643
No 95
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=52.34 E-value=23 Score=22.32 Aligned_cols=54 Identities=7% Similarity=0.055 Sum_probs=34.5
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCC-CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGK-VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~-~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-...... ..+--+=..-+.|...++.|+++..-+
T Consensus 75 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 131 (286)
T 2r91_A 75 NADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYP 131 (286)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCh
Confidence 34444 4567888999999887665433 222111233457888899999998643
No 96
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=52.32 E-value=4.2 Score=26.43 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+...++++.|++.+..+|+--+.+........+......+.+++++||.+-
T Consensus 38 e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 38 EGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 567889999999999999987654321111112234456678899999775
No 97
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=52.08 E-value=22 Score=17.96 Aligned_cols=49 Identities=14% Similarity=0.285 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..+.+ +...+..+|++++...-.. ...+ ...+.+-....+|++++-..
T Consensus 33 ~~~~a~-~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 33 NGREAL-EQFEAEQPDIIILDLMLPE-IDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp SHHHHH-HHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred CHHHHH-HHHHhCCCCEEEEeccCCC-CCHH---HHHHHHHhCCCCCEEEEecC
Confidence 444444 4455668999999865322 1111 23445544567999988543
No 98
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=51.90 E-value=24 Score=22.32 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..++.|.+.+.+.+.+|+++|.. ||...+..+....|++-=
T Consensus 123 ~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~~E 163 (250)
T 2dfa_A 123 ETARAIALAVKAFDPGLPLVVLP----------GTVYEEEARKAGLRVVLE 163 (250)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECT----------TSHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEEEE
Confidence 46788999999999999999954 788889999999998754
No 99
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=51.89 E-value=22 Score=22.54 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=35.8
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 88 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (301)
T 3m5v_A 88 ATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVP 143 (301)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 44444 4468889999999998765433322112234568888899999998643
No 100
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=51.71 E-value=23 Score=18.55 Aligned_cols=50 Identities=12% Similarity=0.155 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..+ ..+..++..+|++++...-.. ...+ ...+.+-.. ..+|++++-..
T Consensus 36 ~~~~~-al~~~~~~~~dlvilD~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 36 DNGLD-AMKLIEEYNPNVVILDIEMPG-MTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp SCHHH-HHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred CCHHH-HHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 34444 445556678999999876322 1111 223444433 35899988543
No 101
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=51.71 E-value=28 Score=22.46 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
|+...--.+....+++|.||+=+... ...+.+.+++.+||+
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~---------~~~~~la~~~~vPVI 118 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSED---------EYYEELVSQVNIPIL 118 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSST---------TCHHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCCh---------hHHHHHHHhCCCCEE
Confidence 44444444455556789999965532 335677888999954
No 102
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=51.61 E-value=35 Score=20.40 Aligned_cols=49 Identities=8% Similarity=-0.072 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+.++.+.+.++|.|++-+....+...-+--....++.+..++||+..-
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~G 200 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASG 200 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEEC
Confidence 4555666777899776544433322221212456777777889988763
No 103
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=51.57 E-value=23 Score=22.36 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=34.9
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCC-CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGK-VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~-~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-...... ..+--+=..-+.|...++.|+++..-+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYP 132 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 34444 4577888999999887664433 222111234457888899999998643
No 104
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=51.55 E-value=23 Score=22.70 Aligned_cols=54 Identities=13% Similarity=0.098 Sum_probs=35.9
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-..-.....+--+=..-+.|...++.|+++..-+
T Consensus 104 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 159 (315)
T 3na8_A 104 TTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNP 159 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 44444 4467889999999998765433322212244568888899999998643
No 105
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=51.34 E-value=9 Score=23.76 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHhcCCCEEEEc
Q 038513 13 GDARDVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG 34 (81)
=++.+++++.|.+.++|||+.=
T Consensus 42 lD~t~~vi~eAi~~~adlIitH 63 (247)
T 1nmo_A 42 VTASQALLDEAVRLGADAVIVH 63 (247)
T ss_dssp EECCHHHHHHHHHTTCSEEEEE
T ss_pred EcCCHHHHHHHHhCCCCEEEEC
Confidence 3778889999999999999873
No 106
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=51.19 E-value=25 Score=18.36 Aligned_cols=51 Identities=12% Similarity=0.213 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..+ ..+..++..+|++++...-.+....+ ...+.+-+...+|++++-..
T Consensus 41 ~~~~~-a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 41 DNGEE-AVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp SSHHH-HHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred CCHHH-HHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 34434 44555566899999987642111111 23444444456999988544
No 107
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=51.06 E-value=24 Score=22.33 Aligned_cols=41 Identities=15% Similarity=0.097 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..++.|.+.+.+.+.+|+++|.. ||...+..+....|++-=
T Consensus 123 ~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~~E 163 (255)
T 1v6t_A 123 DLARAVIEGILDFDKDLILVTLS----------NSRVADIAEEMGLKVAHE 163 (255)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEET----------TCHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEEEE
Confidence 46788999999999999999954 788888999988888754
No 108
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=50.73 E-value=22 Score=22.52 Aligned_cols=54 Identities=13% Similarity=0.125 Sum_probs=35.3
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 135 (297)
T 2rfg_A 80 NPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIP 135 (297)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 445544 577888999999888765433222112234457888899999998643
No 109
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=50.72 E-value=21 Score=22.73 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=34.9
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 92 st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 147 (306)
T 1o5k_A 92 STEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVP 147 (306)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred cHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 445544 577888999998887664433222111234457888899999998643
No 110
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=50.71 E-value=33 Score=23.06 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHhcCCCEEEEcccCCC--C--CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLG--K--VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~--~--~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++-+.++-+|+|.+.|+. + -..+.+..+++++-+....||-.++.-
T Consensus 45 ~~ll~~gakvil~SHlGRP~kG~~~~~~SL~pva~~L~~lLg~~V~f~~d~ 95 (387)
T 1zmr_A 45 ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDY 95 (387)
T ss_dssp HHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHHHHHHHCSSCEEEESCC
T ss_pred HHHHHCCCEEEEEccCCCCCCCCcCCccCHHHHHHHHHHHhCCCCEECccc
Confidence 3445568999999998887 2 345668889999999999999998754
No 111
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=50.62 E-value=27 Score=18.54 Aligned_cols=51 Identities=6% Similarity=0.083 Sum_probs=28.8
Q ss_pred ecCCHHHHHHHHHHhc-CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 11 LDGDARDVICQAVEQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 11 ~~g~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...+..+++. ..++. .+|+|++...-.. ... -...+.+-...++|++++-.
T Consensus 44 ~~~~~~~al~-~l~~~~~~dlvilD~~l~~-~~g---~~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 44 QAANGQEALD-KLAAQPNVDLILLDIEMPV-MDG---MEFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp EESSHHHHHH-HHHHCTTCCEEEECTTSCC-CTT---CHHHHHHHHHCCCEEC-CBS
T ss_pred EECCHHHHHH-HHhcCCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEE
Confidence 3445555554 44455 7999999876332 111 13345555566688887754
No 112
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=50.56 E-value=9.8 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
...+.|.+..+.+++++|++.+.-.+.+-.-=+.++...+-....+||+.+..+.
T Consensus 75 kL~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDi~~v~~~~~~~~g~pVi~v~tpg 129 (511)
T 2xdq_B 75 KVVDNIIRKDTEEHPDLIVLTPTCTSSILQEDLQNFVRRASLSTTADVLLADVNH 129 (511)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCHHHHTTCCCHHHHHHHHHHHCSSEEEECCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcHHHHhccCHHHHHHHhhhccCCCEEEeeCCC
Confidence 4678899999899999999988765544333334444444444479999987653
No 113
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=50.43 E-value=44 Score=23.33 Aligned_cols=44 Identities=7% Similarity=0.110 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
.+......|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 412 ia~aa~~~A~~l~a~aIv~~T~s---------G~tA~~iSr~RP~~pI~a~T~~ 456 (526)
T 4drs_A 412 IACSAVESAHDVNAKLIITITET---------GNTARLISKYRPSQTIIACTAK 456 (526)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECCC
Confidence 34455678899999999987663 889999998777 999998654
No 114
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=50.19 E-value=25 Score=22.35 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=34.8
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-..-.....+--+=..-+.|...++.|+++..-+
T Consensus 96 st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 151 (304)
T 3cpr_A 96 NTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDIP 151 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455554 577889999988887654332222111234457888899999998643
No 115
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=50.19 E-value=45 Score=23.28 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
+....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 407 a~aa~~~A~~l~a~aIv~~T~S---------G~TA~~vSr~RP~~PIia~T~~ 450 (520)
T 3khd_A 407 ARSAVETAESIQASLIIALTET---------GYTARLIAKYKPSCTILALSAS 450 (520)
T ss_dssp HHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhcCCCCCEEEEcCC
Confidence 3444567888899999887663 889999988877 999998654
No 116
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=50.13 E-value=25 Score=22.23 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=35.6
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++.........+--+=..-+.|...++.|+++..-+
T Consensus 87 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 142 (297)
T 3flu_A 87 NTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVP 142 (297)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 44444 4468889999999887754433222111234578888999999998643
No 117
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=49.88 E-value=36 Score=21.07 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHHHHHHH--hcCCCEEEEcccCCCCCCcee-c-CcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVE--QMHIDLLVVGSRGLGKVKRAF-L-GSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~--~~~~dliVmG~~~~~~~~~~~-~-gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.|.+..+ ..++|++|+-..+- +..-+ - |.....+++....||++|-..
T Consensus 114 ~~i~~~~~~l~~~~D~vlIEGagG--l~~pl~~~~~~~adla~~l~~pVILV~~~ 166 (251)
T 3fgn_A 114 DQIVRLIADLDRPGRLTLVEGAGG--LLVELAEPGVTLRDVAVDVAAAALVVVTA 166 (251)
T ss_dssp HHHHHHHHTTCCTTCEEEEECSSS--TTCEEETTTEEHHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHHHHHhcCCEEEEECCCC--CcCCcCcccchHHHHHHHcCCCEEEEEcC
Confidence 44555443 34789999866542 21111 1 234567999999999988544
No 118
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=49.66 E-value=23 Score=22.29 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=35.4
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++.........+--+=..-+.|...++.|+++..-+
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3tak_A 81 STREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVP 136 (291)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 44444 4567889999999887654332222111244568888999999998643
No 119
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=49.61 E-value=26 Score=22.44 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=35.5
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++...-.....+--+=..-+.|...++.|+++..-+
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 158 (314)
T 3qze_A 103 STREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVP 158 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 44444 4468889999999988754433222111234568888899999998643
No 120
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=49.41 E-value=24 Score=19.52 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh----hCCccEEEECCC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH----HAVCPILIVKPP 67 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~----~~~~Pvlvv~~~ 67 (81)
+-++..+++.+|+|++-..= .... |-..-+-++ ...+||+++-..
T Consensus 48 ~al~~~~~~~~DlillD~~M-P~md----G~el~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 48 TALPMLKKGDFDFVVTDWNM-PGMQ----GIDLLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp HHHHHHHHHCCSEEEEESCC-SSSC----HHHHHHHHHHSTTTTTCCEEEEESS
T ss_pred HHHHHHHhCCCCEEEEcCCC-CCCC----HHHHHHHHHhCCCCCCCeEEEEECC
Confidence 33455666799999998763 2222 222333333 245899998653
No 121
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=49.06 E-value=48 Score=23.12 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
+....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 398 a~aa~~~A~~l~a~aIv~~T~S---------G~tA~~iSr~RP~~PIia~T~~ 441 (511)
T 3gg8_A 398 ARAAVETAECVNAAIILALTET---------GQTARLIAKYRPMQPILALSAS 441 (511)
T ss_dssp HHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 3445567888899998887663 888999988877 999998654
No 122
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=48.86 E-value=8.3 Score=20.98 Aligned_cols=16 Identities=13% Similarity=0.000 Sum_probs=10.5
Q ss_pred HHHhhhCCccEEEECC
Q 038513 51 DYCAHHAVCPILIVKP 66 (81)
Q Consensus 51 ~~vi~~~~~Pvlvv~~ 66 (81)
+.......+||.+++.
T Consensus 71 k~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 71 KVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHTTTTCEEEECCH
T ss_pred HHHhhhcCCcEEEeCH
Confidence 3444455789998874
No 123
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=48.81 E-value=25 Score=18.89 Aligned_cols=51 Identities=16% Similarity=0.077 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
..+.. ...+..++..+|+|++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 37 ~~~~~-~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 37 AADAG-EAYRLYRETTPDIVVMDLTLPG-PGG---IEATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp ESSHH-HHHHHHHTTCCSEEEECSCCSS-SCH---HHHHHHHHHHCTTCCEEEEESC
T ss_pred eCCHH-HHHHHHhcCCCCEEEEecCCCC-CCH---HHHHHHHHHhCCCCeEEEEECC
Confidence 33444 4445566678999999876332 111 1234444443 35898888543
No 124
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=48.72 E-value=29 Score=18.32 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..+ ..+..+...+|++++...-.. ... -...+.+-....+|++++-..
T Consensus 35 ~~~~~-al~~~~~~~~dlvllD~~l~~-~~g---~~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 35 YNCEE-AIGKIFSNKYDLIFLEIILSD-GDG---WTLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp SSHHH-HHHHHHHCCCSEEEEESEETT-EEH---HHHHHHHHTTCCCCEEEEESC
T ss_pred CCHHH-HHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHccCCCCCEEEEEcC
Confidence 34444 445556678999999765321 111 123444444447899888543
No 125
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=48.65 E-value=13 Score=24.89 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=37.7
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....+..|++.+.|.+++++++++.|+.-..-... .. ..-+.|-+.+.+++..+...
T Consensus 66 ~~l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~~~~-~~----~rd~~v~~~l~i~~~~~~~~ 122 (420)
T 2j07_A 66 GALWVLEGLPWEKVPEAARRLKAKAVYALTSHTPY-GR----YRDGRVREALPVPLHLLPAP 122 (420)
T ss_dssp CCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHH-HH----HHHHHHHHHCSSCEEEECCC
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEecccChh-HH----HHHHHHHHHcCCeEEEeCCC
Confidence 34556679999999999999999999885432221 11 11234444448888887654
No 126
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=48.62 E-value=29 Score=18.36 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~ 67 (81)
.+.. ...+..++..+|+|++...-.. ... -...+.+-+ ...+|++++-..
T Consensus 39 ~~~~-~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 39 GNAI-EAVPVAVKTHPHLIITEANMPK-ISG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp SSHH-HHHHHHHHHCCSEEEEESCCSS-SCH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCHH-HHHHHHHcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 3443 3445556668999999876332 111 123444443 356899988644
No 127
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=48.57 E-value=23 Score=22.56 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=35.5
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..+. +.+.|++.++|-+++.........+--+=..-+.|...++.|+++..-+
T Consensus 95 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 150 (304)
T 3l21_A 95 DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIP 150 (304)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 44444 4568888999999998764333222112234567888999999998643
No 128
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=48.32 E-value=25 Score=22.77 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=35.6
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 114 st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 169 (332)
T 2r8w_A 114 RTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNP 169 (332)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 455554 577889999999887765433222111233457888899999998643
No 129
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=48.29 E-value=22 Score=22.49 Aligned_cols=54 Identities=9% Similarity=0.055 Sum_probs=34.2
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCC-CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGK-VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~-~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-...... ..+--+=..-+.|...++.|+++..-+
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYP 132 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECc
Confidence 34444 3567888899988887665433 222111233457888889999987643
No 130
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=48.28 E-value=50 Score=22.93 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
+....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 382 a~aa~~~A~~l~a~aIv~~T~S---------G~tA~~isr~RP~~pIia~T~~ 425 (499)
T 3hqn_D 382 CSSAVNSVYETKAKAMVVLSNT---------GRSARLVAKYRPNCPIVCVTTR 425 (499)
T ss_dssp HHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCC
Confidence 3444566788899999887663 889999988877 999998654
No 131
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=48.04 E-value=45 Score=21.90 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=29.8
Q ss_pred hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+.++|++++... +++..-..++++-.+++.+..+.+|+
T Consensus 242 ~~~~D~ivVEGq--Ggl~~P~~~~v~~~ll~g~~p~~vIl 279 (350)
T 2g0t_A 242 KTGKEIVFVEGQ--GALRHPAYGQVTLGLLYGSNPDVVFL 279 (350)
T ss_dssp HTTCSEEEEECC--SCTTCTTTHHHHHHHHHHHCCSEEEE
T ss_pred hcCCCEEEEccC--eeccccCchHHHHHHHcCCCCCEEEE
Confidence 669999999877 34444455777888999999888888
No 132
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=48.02 E-value=25 Score=23.43 Aligned_cols=39 Identities=21% Similarity=0.384 Sum_probs=28.6
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhhC--CccEEEECC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--VCPILIVKP 66 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--~~Pvlvv~~ 66 (81)
.++||+|.|--.-. .+.+.|.+...|.+.+ .+||+++-.
T Consensus 277 ~~ADLVITGEG~~D--~QT~~GK~p~gVa~~A~~~~PviaiaG 317 (371)
T 1to6_A 277 SDVDLVIVGEGRLD--RQSLAGKAPIGVAKRTPVGVPVVAICG 317 (371)
T ss_dssp TTCSEEEECCSEEC--STTTTTCHHHHHHTTSCTTCCEEEEES
T ss_pred cCCCEEEECCCCCC--CCCCCCcHHHHHHHHHhcCCCEEEEeC
Confidence 47999999865332 2345689888888777 589999854
No 133
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=47.84 E-value=41 Score=22.44 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=30.2
Q ss_pred HHhcCCCEEEEcccCCCCCCce--ecCcHHHHHh-hhCCccEEEECCC
Q 038513 23 VEQMHIDLLVVGSRGLGKVKRA--FLGSVSDYCA-HHAVCPILIVKPP 67 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~~~~--~~gs~~~~vi-~~~~~Pvlvv~~~ 67 (81)
.++.++|.+++|+..-...... -.|+-.-.++ ++..+|++|+-+.
T Consensus 252 M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~ 299 (383)
T 2a0u_A 252 MLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPT 299 (383)
T ss_dssp HHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred hhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCc
Confidence 3445799999999875433332 2677765554 5566999999554
No 134
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=47.69 E-value=52 Score=20.94 Aligned_cols=61 Identities=8% Similarity=0.079 Sum_probs=32.2
Q ss_pred cceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCCCC
Q 038513 3 QVNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPPKE 69 (81)
Q Consensus 3 ~v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~~~ 69 (81)
++++....... .....+.+.+...++|+||.... .+ .+..++..+.. ...+|+.++|.+..
T Consensus 57 g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG-DG-----Tl~~v~~~l~~~~~~~~~plgiiP~Gt~ 121 (332)
T 2bon_A 57 GMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG-DG-----TINEVSTALIQCEGDDIPALGILPLGTA 121 (332)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES-HH-----HHHHHHHHHHHCCSSCCCEEEEEECSSS
T ss_pred CCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc-ch-----HHHHHHHHHhhcccCCCCeEEEecCcCH
Confidence 34555444332 23344444444457887765322 11 12344555553 46789999987754
No 135
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=47.67 E-value=16 Score=23.09 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
-|.+.|++.++++++|+|.+...-.
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~t 191 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTVT 191 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCCC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecC
Confidence 5899999999999999999987644
No 136
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=47.66 E-value=6.4 Score=26.85 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..+.|.+..+.+++++|++.+.-.+.+-.-=+.++.+.+-...++||+.+..+
T Consensus 109 kL~~~I~~~~~~~~P~~I~V~tTC~~e~IGdDl~~v~~~~~~~~~~pVi~v~tp 162 (483)
T 3pdi_A 109 RLFHAIRQAVESYSPPAVFVYNTCVPALIGDDVDAVCKAAAERFGTPVIPVDSA 162 (483)
T ss_dssp HHHHHHHHHHHHHCCSCEEEECCHHHHHTTCCHHHHHHHHHHHHCSCEEEECCC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCchHHHhcCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 567888899999999999998876554433333344444433447899988754
No 137
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=47.57 E-value=28 Score=22.31 Aligned_cols=54 Identities=17% Similarity=0.176 Sum_probs=35.3
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-..-.....+--+=..-+.|...++.|+++..-+
T Consensus 102 st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 157 (315)
T 3si9_A 102 STSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIP 157 (315)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCc
Confidence 44444 4568899999999888754332222111234468888899999998643
No 138
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=47.53 E-value=20 Score=22.66 Aligned_cols=53 Identities=8% Similarity=0.004 Sum_probs=34.3
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+..++ +.+.|++.++|-+++-........+--+=..-+.|...++.|+++..-
T Consensus 84 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 84 NLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 44444 456788899999888766543322211223445778888999999864
No 139
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=47.33 E-value=31 Score=20.74 Aligned_cols=49 Identities=6% Similarity=-0.109 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+..+.+.+.++|.|++-+..+.+...-+--....++....++||+..-
T Consensus 149 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~G 197 (244)
T 1vzw_A 149 YETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASG 197 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEEC
Confidence 4455666677899666544333222111212456778888889998763
No 140
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=47.18 E-value=47 Score=22.84 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
.+....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 358 ia~aa~~~a~~l~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~ 402 (470)
T 1e0t_A 358 VCRGAVETAEKLDAPLIVVATQG---------GKSARAVRKYFPDATILALTTN 402 (470)
T ss_dssp HHHHHHHHHHHTTCSBEEEECSS---------SHHHHHHHTTCCSSBEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------hhHHHHHHhhCCCCCEEEECCC
Confidence 45555667888889988876652 888989988877 999998654
No 141
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=46.71 E-value=6.5 Score=25.24 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCc-eecCcHHHHHhhhCCccEEEEC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKR-AFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~-~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
+...++++.|++.+..+|+-.+.+...... ..+......+.+++++||.+-=
T Consensus 29 e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValHl 81 (286)
T 1gvf_A 29 ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL 81 (286)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEEc
Confidence 567899999999999999988776422111 2234667788889999988763
No 142
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=46.49 E-value=26 Score=22.79 Aligned_cols=54 Identities=28% Similarity=0.253 Sum_probs=34.7
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 111 st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P 166 (343)
T 2v9d_A 111 NARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFP 166 (343)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 445554 577888999998887664432222111233457888899999998643
No 143
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=45.70 E-value=16 Score=24.58 Aligned_cols=28 Identities=7% Similarity=0.288 Sum_probs=22.2
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEE
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVV 33 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVm 33 (81)
++.....=++.+++++.|.+.++||||.
T Consensus 64 V~~Vl~alD~t~~Vv~eAi~~gadlIIt 91 (397)
T 2gx8_A 64 VRHVLIALDVTEEVVDEAIQLGANVIIA 91 (397)
T ss_dssp CCEEEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEE
Confidence 3444445588899999999999999987
No 144
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=45.65 E-value=34 Score=18.28 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.++..+..++..+|+|++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 55 ~~~al~~l~~~~~dlii~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 55 GQEAIQLLEKESVDIAILDVEMPV-KTG---LEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHHHHHHTTSCCSEEEECSSCSS-SCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHhhccCCCEEEEeCCCCC-CcH---HHHHHHHHHhCCCCeEEEEeCC
Confidence 344556667788999999876332 111 0223344333 34888888654
No 145
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=45.59 E-value=41 Score=20.10 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
++.++...+..+|+|++...-.. ... -...+.+-....+|++++-..
T Consensus 71 ~~al~~~~~~~~DlvllD~~lp~-~~G---~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 71 MNGLIKAREDHPDLILLDLGLPD-FDG---GDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHHHHSCCSEEEEECCSCH-HHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCCCCCEEEEECC
Confidence 33445566678999999765321 111 123445555556999998654
No 146
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=45.58 E-value=56 Score=20.76 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=31.6
Q ss_pred ceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHh-hhCCccEEEECCCCC
Q 038513 4 VNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCA-HHAVCPILIVKPPKE 69 (81)
Q Consensus 4 v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi-~~~~~Pvlvv~~~~~ 69 (81)
++++...... ..+..+.+.+...++|+||...- .+. +..++..++ ....+|+.++|.+..
T Consensus 56 ~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG-DGT-----v~~v~~~l~~~~~~~pl~iIP~GT~ 117 (337)
T 2qv7_A 56 YETSAYATEKIGDATLEAERAMHENYDVLIAAGG-DGT-----LNEVVNGIAEKPNRPKLGVIPMGTV 117 (337)
T ss_dssp EEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HHH-----HHHHHHHHTTCSSCCEEEEEECSSC
T ss_pred CeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC-chH-----HHHHHHHHHhCCCCCcEEEecCCcH
Confidence 4444443333 24445555555557887765432 111 123344443 345799999997753
No 147
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=45.48 E-value=28 Score=17.84 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
+...+..++..+|++++...-.. ...+ ...+.+-.. ..+|++++-..
T Consensus 37 ~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 37 LQALDIVTKERPDLVLLDMKIPG-MDGI---EILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp HHHHHHHHHHCCSEEEEESCCTT-CCHH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCCEEEEEcc
Confidence 33445555678999999865322 1111 223444332 45899888543
No 148
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=45.43 E-value=7.2 Score=25.06 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC--CceecCcHHHHHhh--hCCccEEEEC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV--KRAFLGSVSDYCAH--HAVCPILIVK 65 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~--~~~~~gs~~~~vi~--~~~~Pvlvv~ 65 (81)
+...++++.|++.+..+|+-.+.+.... ....+......+.+ ++++||.+-=
T Consensus 32 e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValHl 87 (288)
T 3q94_A 32 EWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHL 87 (288)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEEC
Confidence 5678999999999999999877654222 11123455567778 8999998763
No 149
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=45.28 E-value=16 Score=22.89 Aligned_cols=15 Identities=7% Similarity=0.208 Sum_probs=7.2
Q ss_pred HHHHhcCCCEEEEcc
Q 038513 21 QAVEQMHIDLLVVGS 35 (81)
Q Consensus 21 ~~a~~~~~dliVmG~ 35 (81)
....+.+.+.+|+-.
T Consensus 21 ~~La~~G~~V~v~Er 35 (397)
T 3oz2_A 21 RYAAKYGLKTLMIEK 35 (397)
T ss_dssp HHHHHTTCCEEEECS
T ss_pred HHHHHCCCcEEEEeC
Confidence 334444555555543
No 150
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=45.23 E-value=33 Score=18.07 Aligned_cols=54 Identities=6% Similarity=-0.007 Sum_probs=31.2
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+..+++....+...+|+|++...-..+...+ ...+.+-+...+|++++-...
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 35 ALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp ESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred ecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 345555554444447899999987632212111 234455445679999986544
No 151
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=45.02 E-value=42 Score=19.10 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+..+.+ +...+..+|++++...-.. ... -.....+-...+.|++++-.
T Consensus 45 ~~~~~al-~~~~~~~~dlvi~D~~~p~-~~g---~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 45 GDGQEAV-ELAELHKPDLVIMDVKMPR-RDG---IDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp SSHHHHH-HHHHHHCCSEEEEESSCSS-SCH---HHHHHHHHHTTCSCEEEEEE
T ss_pred CCHHHHH-HHHhhcCCCEEEEeCCCCC-CCh---HHHHHHHHhcCCCCEEEEec
Confidence 3444444 4556668999999866322 111 13345555556679988843
No 152
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=44.90 E-value=14 Score=25.26 Aligned_cols=55 Identities=15% Similarity=-0.053 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHhcC-CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMH-IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~-~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..+.|.+..+.++ +++|++.+.-.+.+-.-=+.++.+.+-...++||+.++.+.
T Consensus 130 kL~~~I~~~~~~~~~P~~I~V~tTC~~e~IGdDl~~v~~~~~~~~~~pVi~v~tpg 185 (492)
T 3u7q_A 130 KLAKLIDEVETLFPLNKGISVQSECPIGLIGDDIESVSKVKGAELSKTIVPVRCEG 185 (492)
T ss_dssp HHHHHHHHHHHHCTTCCCEEEEECTHHHHTTCCHHHHHHHHHHHHTCCEEEECCCT
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCcHHHHHhcCHHHHHHHHHHhhCCcEEEecCCC
Confidence 46788889999998 99999988876554333333444444334478999997543
No 153
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=44.67 E-value=31 Score=17.54 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....+...+..+|++++...-.. ...+ ...+.+-....+|++++-..
T Consensus 37 ~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 37 AEMHQILSEYDINLVIMDINLPG-KNGL---LLARELREQANVALMFLTGR 83 (123)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCEEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCcEEEEECC
Confidence 34445556778999999876322 1111 23444444457898888543
No 154
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=44.66 E-value=26 Score=22.33 Aligned_cols=39 Identities=5% Similarity=0.095 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.|.|+. .++|||++... ......++++...+||++++..
T Consensus 89 ~E~Ila----l~PDLIi~~~~---------~~~~~~~~~~~~GiPvv~~~~~ 127 (346)
T 2etv_A 89 LESLIT----LQPDVVFITYV---------DRXTAXDIQEXTGIPVVVLSYG 127 (346)
T ss_dssp HHHHHH----HCCSEEEEESC---------CHHHHHHHHHHHTSCEEEECCC
T ss_pred HHHHhc----CCCCEEEEeCC---------ccchHHHHHHhcCCcEEEEecC
Confidence 455544 38999998642 0245667788889999999643
No 155
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=44.62 E-value=23 Score=22.33 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=34.8
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++.........+--+=..-+.|...++.|+++..-+
T Consensus 82 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P 137 (292)
T 3daq_A 82 DTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVP 137 (292)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECH
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 44444 4467888899998887654333222112234567888889999998643
No 156
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=44.46 E-value=31 Score=17.50 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
++..+..+...+|++++...-.. ...+ ...+.+-+...+|++++-..
T Consensus 36 ~~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 36 AGLREIMQNQSVDLILLDINLPD-ENGL---MLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHhcCCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEECC
Confidence 44556667778999999765322 1111 23444444456888888543
No 157
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=44.43 E-value=56 Score=20.37 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=24.2
Q ss_pred hcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 25 QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 25 ~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..++|||++.... ......-++...+||++++...
T Consensus 82 ~l~PDlIi~~~~~---------~~~~~~~L~~~Gipvv~~~~~~ 116 (326)
T 3psh_A 82 ALKPDVVFVTNYA---------PSEMIKQISDVNIPVVAISLRT 116 (326)
T ss_dssp HTCCSEEEEETTC---------CHHHHHHHHTTTCCEEEECSCC
T ss_pred ccCCCEEEEeCCC---------ChHHHHHHHHcCCCEEEEeccc
Confidence 4589999987431 1224456688899999997543
No 158
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=44.12 E-value=38 Score=20.45 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=29.4
Q ss_pred HHHHHHHHh---cCCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQ---MHIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~---~~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+.|.+..++ .++|++++-..+- .+... +.....+++....||++|-.
T Consensus 97 ~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~---~~~~adla~~l~~pviLV~~ 148 (228)
T 3of5_A 97 ENLKQFIEDKYNQDLDILFIEGAGGLLTPYSD---HTTQLDLIKALQIPVLLVSA 148 (228)
T ss_dssp HHHHHHHHGGGGSSCSEEEEEEEEETTCBSSS---SCBHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHHccCCEEEEECCCcccccccc---chhHHHHHHHcCCCEEEEEc
Confidence 455555443 5899999865531 12221 33456888888999987743
No 159
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=43.86 E-value=20 Score=23.19 Aligned_cols=22 Identities=0% Similarity=0.055 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.+.|.+.+++.++|+|++|.+.
T Consensus 76 a~~La~~i~~~~pdlVL~g~ts 97 (320)
T 1o97_D 76 EASVSALIAAHNPSVVLLPHSV 97 (320)
T ss_dssp HHHHHHHHHHHCCSEEEEECSH
T ss_pred HHHHHHHHHhcCCCEEEEeCCC
Confidence 5667788888899999999854
No 160
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=43.72 E-value=24 Score=22.42 Aligned_cols=53 Identities=6% Similarity=-0.076 Sum_probs=34.2
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKP 66 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~ 66 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++ .|+++..-
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 445554 577888999998887664432222111234457788888 99999864
No 161
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=43.57 E-value=16 Score=24.67 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=38.2
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
....+..|++.+.|.+++++++++.|+.-....... -...+.+.+...|++..+..
T Consensus 106 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~-----~~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 106 IPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIK-----NQWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp CCEEEEESCHHHHHHHHHHHTTCSEEEEECCCSHHH-----HHHHHHHHHHCCSCEEEECC
T ss_pred CcEEEEeCCHHHHHHHHHHHcCCCEEEEecccchhH-----HHHHHHHHHHcCCEEEEEeC
Confidence 344566799999999999999999999854322111 12234555556888887764
No 162
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=43.51 E-value=37 Score=18.12 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+.. +..+..++..+|+|++...-.. ... -...+.+-+. ..+|++++-..
T Consensus 48 ~~~~-~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 48 DDGA-AALELIKAHLPDVALLDYRMPG-MDG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp SSHH-HHHHHHHHHCCSEEEEETTCSS-SCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred CCHH-HHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 3444 4445556678999999876422 111 0223344333 34888888544
No 163
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=43.42 E-value=24 Score=19.00 Aligned_cols=46 Identities=9% Similarity=0.039 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~ 66 (81)
+...+...+..+|+|++...-.. ...+ .....+-.. ..+|++++-.
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 41 LDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 44455566678999999876322 1110 233444443 3589888854
No 164
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=43.33 E-value=26 Score=22.43 Aligned_cols=53 Identities=11% Similarity=-0.057 Sum_probs=34.1
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+..++| .+.|++.++|-+++...-.....+--+=..-+.|...++.|+++...
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 91 ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 444444 46788899999998755433222111123456788888999999863
No 165
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=43.32 E-value=47 Score=19.19 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+..+. .+..++..+|++++...-.. ...+ ...+.+-....+|++++-.
T Consensus 35 ~~~~~a-l~~~~~~~~dlvllD~~l~~-~~g~---~~~~~l~~~~~~~ii~lt~ 83 (230)
T 2oqr_A 35 TDGPAA-LAEFDRAGADIVLLDLMLPG-MSGT---DVCKQLRARSSVPVIMVTA 83 (230)
T ss_dssp CSHHHH-HHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHHCSCSEEEEEC
T ss_pred CCHHHH-HHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHcCCCCCEEEEeC
Confidence 344444 44555668999999876322 1111 2345555556799999854
No 166
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=43.24 E-value=55 Score=23.06 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 433 ~aa~~~A~~l~a~aIv~~T~S---------G~TA~~iSr~RP~~PIia~T~~ 475 (550)
T 3gr4_A 433 VGAVEASFKCCSGAIIVLTKS---------GRSAHQVARYRPRAPIIAVTRN 475 (550)
T ss_dssp HHHHHHHHHTTCSCEEEECSS---------SHHHHHHHTTCCSSCEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCC
Confidence 344556788899988887663 888999988877 999998654
No 167
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=42.75 E-value=53 Score=19.69 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+..+.+.+.+++.|+.-+..+.+...-+--....++....++|++.--
T Consensus 153 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~G 202 (253)
T 1thf_D 153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASG 202 (253)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 34555666677899777644333322211112356677777889988764
No 168
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=42.64 E-value=39 Score=22.03 Aligned_cols=41 Identities=12% Similarity=0.075 Sum_probs=28.1
Q ss_pred CCCEEEEcccCCCCCCce--ecCcHHHHHh-hhCCccEEEECCC
Q 038513 27 HIDLLVVGSRGLGKVKRA--FLGSVSDYCA-HHAVCPILIVKPP 67 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~--~~gs~~~~vi-~~~~~Pvlvv~~~ 67 (81)
++|.+++|+..-...... -.|+-.-.++ ++..+|++|+-+.
T Consensus 209 ~Vd~VivGAd~V~anG~v~NKiGT~~lAl~Ak~~~vPfyV~a~~ 252 (338)
T 3a11_A 209 MTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAET 252 (338)
T ss_dssp GCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCEEEEECCG
T ss_pred hCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeccc
Confidence 699999999875433332 2677765554 5566999999544
No 169
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=42.55 E-value=27 Score=22.00 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=34.4
Q ss_pred CHHHHH--HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++|-+++-........+--+=..-+.|...++.|+++..-+
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (292)
T 2ojp_A 81 ATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVP 136 (292)
T ss_dssp SHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCH
T ss_pred cHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 445544 567888899988887664432222112234467888889999998643
No 170
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=42.55 E-value=31 Score=23.90 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=30.0
Q ss_pred EEEEEecCCHHHHHHH--HHHhcCCCEEEEcc-cCCCCCCceecCc
Q 038513 6 AQTLILDGDARDVICQ--AVEQMHIDLLVVGS-RGLGKVKRAFLGS 48 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~--~a~~~~~dliVmG~-~~~~~~~~~~~gs 48 (81)
+.+++..|+..+-|.+ .|.++++|.|.+=. .+.|.+.-...|.
T Consensus 153 iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~Ga 198 (516)
T 1xrs_A 153 LYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYGA 198 (516)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCSC
T ss_pred EEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCCC
Confidence 4567788999998875 68899999987644 3455544444443
No 171
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=42.52 E-value=23 Score=18.50 Aligned_cols=47 Identities=2% Similarity=-0.002 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC----CCCceecCcHHHHHhhh-CCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG----KVKRAFLGSVSDYCAHH-AVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~----~~~~~~~gs~~~~vi~~-~~~Pvlvv~~ 66 (81)
+...+..++..+|++++...-.. ....+ ...+.+-+. ..+|++++-.
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 37 VSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp HHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEEC
Confidence 44555566678999999876320 11111 223444443 3589888853
No 172
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=42.11 E-value=32 Score=18.39 Aligned_cols=50 Identities=8% Similarity=0.009 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHh-cCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQ-MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~-~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..+ ..+..++ ..+|++++...-... .. -...+.+-.. ..+|++++-..
T Consensus 36 ~~~~~-a~~~l~~~~~~dlvi~d~~l~~~-~g---~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 36 ETVSD-ALAFLEADNTVDLILLDVNLPDA-EA---IDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp SSHHH-HHHHHHTTCCCSEEEECC-------C---HHHHHHHHHHCTTSEEEEC---
T ss_pred cCHHH-HHHHHhccCCCCEEEEeCCCCCC-ch---HHHHHHHHHhCCCCeEEEEeCC
Confidence 34444 4444555 789999998763221 11 0223444443 35898888543
No 173
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A*
Probab=42.10 E-value=15 Score=24.45 Aligned_cols=27 Identities=4% Similarity=0.007 Sum_probs=21.3
Q ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEc
Q 038513 8 TLILDGDARDVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~~~~~dliVmG 34 (81)
.....=++.+++++.|.+.++||||.=
T Consensus 42 ~Vl~alD~t~~Vv~eAi~~~adlIItH 68 (370)
T 2nyd_A 42 GVLTALDCTLEVVNEAIEKGYNTIISH 68 (370)
T ss_dssp CEEEESSCCHHHHHHHHHHTCCEEEES
T ss_pred EEEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence 334444788999999999999999873
No 174
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=41.98 E-value=29 Score=21.12 Aligned_cols=42 Identities=14% Similarity=0.096 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+++.+..++.++|+||+...++- + ...++...+..++=+.+
T Consensus 70 d~~~~~~l~~~~~Dliv~agy~~I-----l----~~~~l~~~~~~~iNiHp 111 (211)
T 3p9x_A 70 EIEVVQQLKEKQIDFVVLAGYMRL-----V----GPTLLGAYEGRIVNIHP 111 (211)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCSC-----C----CHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEeCchhh-----c----CHHHHhhccCCeEEECC
Confidence 357889999999999999866421 1 34555555555555544
No 175
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=41.97 E-value=76 Score=22.44 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
+....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 362 a~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~Rp~~pI~a~t~~ 405 (587)
T 2e28_A 362 GQSVAHTALNLDVAAIVTPTVS---------GKTPQMVAKYRPKAPIIAVTSN 405 (587)
T ss_dssp HHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEESS
T ss_pred HHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhcCCCCCEEEECCC
Confidence 4444667888899988876653 888999988877 999998654
No 176
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=41.69 E-value=40 Score=19.03 Aligned_cols=54 Identities=22% Similarity=0.151 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
-.+...+.-++-+.|.-++|+...++.....--..-+...+..+.||+++-++.
T Consensus 71 y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~ 124 (141)
T 4e0q_A 71 YYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPL 124 (141)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCS
T ss_pred HHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCC
Confidence 456777778888999999999865542111111234566777889999885443
No 177
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.38 E-value=39 Score=17.76 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~ 67 (81)
.+..+ .++..++..+|+|++...-.. ...+ ...+.+-. ...+|++++-..
T Consensus 35 ~~~~~-al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 35 ASGEE-ALQQIYKNLPDALICDVLLPG-IDGY---TLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp SSHHH-HHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSGGGTTCCEEEEECT
T ss_pred CCHHH-HHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHcCCCcCCccEEEEecC
Confidence 34444 445566789999999876322 1110 22333332 235889888654
No 178
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=41.26 E-value=40 Score=17.77 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhh---hCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAH---HAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~---~~~~Pvlvv~~~ 67 (81)
+...+..++..+|+|++...-.. .. | ...+.+-. ...+|++++-..
T Consensus 41 ~~a~~~l~~~~~dlii~D~~l~~-~~----g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 41 AKALYQVQQAKYDLIILDIGLPI-AN----GFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHTTCCCSEEEECTTCGG-GC----HHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHhhcCCCCEEEEeCCCCC-CC----HHHHHHHHHhcccccCCCEEEEeCC
Confidence 44455566778999999866321 11 2 22334433 245899988654
No 179
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Probab=41.07 E-value=40 Score=22.75 Aligned_cols=47 Identities=13% Similarity=0.021 Sum_probs=35.9
Q ss_pred HHHHhcCCCEEEEcccCCCC----CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGK----VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~----~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++-+.++-+|+|.+.|+.. -..+.+-.+++++-+....||-.++.-
T Consensus 48 ~~ll~~gakVil~SHlGRP~kg~~~~~~SL~pva~~L~~lLg~~V~f~~d~ 98 (395)
T 4fey_A 48 QYILDQGGAVILMSHLGRPTEGEYDSQFSLEPVAKALSEIINKPVKFAKDW 98 (395)
T ss_dssp HHHHHHTCEEEEECCCSCCCTTSCCGGGCSHHHHHHHHHHHCSCEEEESST
T ss_pred HHHHHCCCEEEEEecCCCCCCCCcCcccCHHHHHHHHHHHHCCCcEECccc
Confidence 34445588999999988872 234567889999999999999998753
No 180
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=41.06 E-value=28 Score=21.23 Aligned_cols=22 Identities=23% Similarity=0.093 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.+++.+..++.++|++|+...+
T Consensus 78 d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 78 DVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHHHHHTTCCSEEEEEECC
T ss_pred hHHHHHHHHhhCCCEEEEcCch
Confidence 4578889999999999998764
No 181
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=40.85 E-value=29 Score=21.14 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+..++.++|++|+...++ .+ +..++...+..++=+++.
T Consensus 72 d~~~~~~l~~~~~Dliv~agy~~-----il----~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 72 ESTLQKTIDHYDPKLIVLAGFMR-----KL----GKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp HHHHHHHHHTTCCSEEEESSCCS-----CC----CHHHHHHTTTSEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEccchh-----hC----CHHHHhhccCCeEEeCcc
Confidence 46788999999999999976532 11 445666666566666543
No 182
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=40.84 E-value=28 Score=21.09 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+..++.++|++|+...++ .+ +..++...+..++=+++.
T Consensus 75 d~~~~~~l~~~~~Dliv~agy~~-----il----~~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 75 EDAILAALDVLKPDIICLAGYMR-----LL----SGRFIAPYEGRILNIHPS 117 (209)
T ss_dssp HHHHHHHHHHHCCSEEEESSCCS-----CC----CHHHHGGGTTCEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecccc-----Cc----CHHHHhhccCCeEEECCc
Confidence 36788999999999999986542 11 445666665556655543
No 183
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=40.67 E-value=68 Score=22.85 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
....+.|.+.++..||.-+.. |+++..+.+.-| ||++.+-+.
T Consensus 382 ~aa~~~a~~l~a~aIv~~T~s---------G~ta~~isr~RP~~pIia~t~~ 424 (606)
T 3t05_A 382 ISVAHTALNLNVKAIVAATES---------GSTARTISKYRPHSDIIAVTPS 424 (606)
T ss_dssp HHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHhcCCCEEEEEcCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 334566888899988887663 889999988877 999998654
No 184
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=39.87 E-value=17 Score=24.65 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=39.2
Q ss_pred EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 7 ~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...+..|++.+.|.+++++++++-|+.-..-.. . ..-.-....+.+....+++..+...
T Consensus 72 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~p-~-~~~rd~~v~~~l~~~gi~~~~~~~~ 130 (484)
T 1owl_A 72 RLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEP-Y-GRDRDGQVAAALKTAGIRAVQLWDQ 130 (484)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCSEEEEECCCSH-H-HHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCh-h-HHHHHHHHHHHHHHcCcEEEEecCC
Confidence 445667999999999999999999988543222 1 1111233345556668888887654
No 185
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=39.67 E-value=63 Score=20.73 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=25.1
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
.|+...--.+....+ +|.||+=+.. ....+.+.+.+.+||+=
T Consensus 80 kgEsl~DTarvls~~-~D~iviR~~~---------~~~~~~la~~~~vPVIN 121 (299)
T 1pg5_A 80 KGENLADTIRMLNNY-SDGIVMRHKY---------DGASRFASEISDIPVIN 121 (299)
T ss_dssp -CCCHHHHHHHHHHH-CSEEEEEESS---------BTHHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHHHHHHh-CCEEEEeCCC---------hhHHHHHHHhCCCCEEe
Confidence 343333333334444 7999885442 34567888899999763
No 186
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=39.64 E-value=19 Score=22.70 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=32.0
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..+. +.+.|++.++|-+++-........+--+=..-+.|.+.++.|+++..-+
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P 136 (291)
T 3a5f_A 81 NTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVP 136 (291)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECH
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 44444 4577888999998887654332211111122235667788999988643
No 187
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=39.59 E-value=48 Score=22.81 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--~~Pvlvv~~~~ 68 (81)
...+.|.+..+.+++++|++-+.-.+.+ +|...+.+++.. .+||+.++.+.
T Consensus 72 kL~~aI~~~~~~~~P~~I~V~tTC~~el----IGdDi~~v~~~~~~~~pVi~v~tpg 124 (525)
T 3aek_B 72 LLKDALAAAHARYKPQAMAVALTCTAEL----LQDDPNGISRALNLPVPVVPLELPS 124 (525)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEECTTGGG----SCCCHHHHHHHHTCSSCEEECCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHH----hcccHHHHHHHhcCCCCEEEEECCC
Confidence 3567788888899999999888765543 466666776665 69988887653
No 188
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=39.51 E-value=36 Score=21.49 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=34.7
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCC-CCceecCcHHHHHhhhC---CccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGK-VKRAFLGSVSDYCAHHA---VCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~-~~~~~~gs~~~~vi~~~---~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-...... ..+--+=..-+.|...+ +.|+++..-+
T Consensus 83 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P 142 (294)
T 3b4u_A 83 SIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIP 142 (294)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECH
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence 45555 4577889999999888664433 22111123345778888 8999997643
No 189
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=39.39 E-value=60 Score=20.90 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+..+. .+..++..+|++++...-.. ...+ ...+.+.+..++|++++-..
T Consensus 35 a~~~~eA-l~~l~~~~pDlVllDi~mp~-~dGl---ell~~l~~~~p~pVIvlS~~ 85 (349)
T 1a2o_A 35 APDPLVA-RDLIKKFNPDVLTLDVEMPR-MDGL---DFLEKLMRLRPMPVVMVSSL 85 (349)
T ss_dssp ESSHHHH-HHHHHHHCCSEEEEECCCSS-SCHH---HHHHHHHHSSCCCEEEEECC
T ss_pred eCCHHHH-HHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHhcCCCcEEEEECC
Confidence 3444444 45556678999999865322 1111 34566666677999998543
No 190
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=39.22 E-value=42 Score=17.54 Aligned_cols=50 Identities=10% Similarity=0.274 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~~ 68 (81)
+..+ ..+..++..+|+|++...-.. ... -...+.+-.. ..+|++++-...
T Consensus 34 ~~~~-a~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 86 (140)
T 3n53_A 34 NEKE-ALEQIDHHHPDLVILDMDIIG-ENS---PNLCLKLKRSKGLKNVPLILLFSSE 86 (140)
T ss_dssp SHHH-HHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC-
T ss_pred CHHH-HHHHHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHcCcccCCCCEEEEecCC
Confidence 4444 445556678999999876322 111 1334555444 468999886543
No 191
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=39.20 E-value=43 Score=17.54 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
+...+..++..+|+|++.. - ..... -...+.+-... .+|++++-..
T Consensus 38 ~~a~~~l~~~~~dlvi~d~-~-~~~~g---~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 38 QEAFTFLRREKIDLVFVDV-F-EGEES---LNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHTTSCCSEEEEEC-T-TTHHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHhccCCCEEEEeC-C-CCCcH---HHHHHHHHHHCCCCCEEEEECC
Confidence 4445566667899999986 2 22111 02233443333 4899888543
No 192
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=39.02 E-value=28 Score=19.79 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCEEEEcc
Q 038513 16 RDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~ 35 (81)
.+.|.+..++.++|+|++=-
T Consensus 23 ~~~i~~~i~~~~pDIi~LQE 42 (250)
T 4f1h_A 23 ARGLCSYLALYTPDVVFLQE 42 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEe
Confidence 46788999999999999854
No 193
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=38.98 E-value=65 Score=20.76 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=18.7
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+|.||+=+.. ....+.+.+++.+||+
T Consensus 101 ~D~iviR~~~---------~~~~~~la~~~~vPVI 126 (308)
T 1ml4_A 101 CDVIVIRHPK---------EGAARLAAEVAEVPVI 126 (308)
T ss_dssp CSEEEEEESS---------TTHHHHHHHTCSSCEE
T ss_pred CcEEEEecCC---------hhHHHHHHHhCCCCEE
Confidence 7988885442 3456778888899975
No 194
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=38.60 E-value=23 Score=22.79 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=19.9
Q ss_pred EEecCCHHHHHHHHHHhcCCCEEEE
Q 038513 9 LILDGDARDVICQAVEQMHIDLLVV 33 (81)
Q Consensus 9 ~~~~g~~~~~I~~~a~~~~~dliVm 33 (81)
....=|+....++.|.+.++|||+-
T Consensus 41 IlvaLD~t~~vv~eA~~~g~dlIIt 65 (278)
T 3rxy_A 41 VMMGIDIGPAELLLARQLGCDGVIA 65 (278)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHcCCCEEEE
Confidence 3333478888999999999999986
No 195
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=38.44 E-value=65 Score=19.40 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=34.0
Q ss_pred ecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 11 LDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 11 ~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
...+..++|.+..++++---+|+|+..+......-.....+. +....-||+++
T Consensus 87 vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~-i~~~~~pvalv 139 (192)
T 3dcm_X 87 LKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRI-IIETEKPVLIL 139 (192)
T ss_dssp EESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHH-HHHCCSCEEEE
T ss_pred EECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHH-HHhCCCCEEEE
Confidence 345778888888877777778888887754332222223333 33566788887
No 196
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=38.35 E-value=73 Score=20.03 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=22.5
Q ss_pred HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 24 EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...++|||++... ......-++...+||++++.
T Consensus 113 ~al~PDLIi~~~~----------~~~~~~~L~~~gipvv~~~~ 145 (335)
T 4hn9_A 113 VAATPDVVFLPMK----------LKKTADTLESLGIKAVVVNP 145 (335)
T ss_dssp HHTCCSEEEEEGG----------GHHHHHHHHHTTCCEEEECC
T ss_pred HhcCCCEEEEeCc----------chhHHHHHHHcCCCEEEEcC
Confidence 3458999998643 11233456788899999964
No 197
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=38.35 E-value=36 Score=20.53 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+..++.++|++|+...++ .+ +..++...+..++=+++.
T Consensus 71 ~~~~~~~l~~~~~Dliv~a~y~~-----il----~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 71 ESEILRELKGRQIDWIALAGYMR-----LI----GPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCS-----CC----CHHHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEchhhh-----hC----CHHHHhhhcCCEEEEecC
Confidence 34788888899999999976532 11 456666666666666544
No 198
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=38.30 E-value=36 Score=20.57 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++.+..++.++|++|+...++ .+ ...++...+..++=+++.
T Consensus 70 ~~~~~~l~~~~~Dliv~a~y~~-----il----~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 70 ERMALELKKKGVELVVLAGFMR-----IL----SHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS-----CC----CHHHHTTSTTCEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEeCchh-----hC----CHHHHhhccCCeEEEcCC
Confidence 5688888899999999976532 11 456666666677766654
No 199
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=38.27 E-value=35 Score=23.71 Aligned_cols=44 Identities=5% Similarity=0.112 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPI 61 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pv 61 (81)
-.+++.+.|+++++.|||.|....+....+ .--..|.+....-+
T Consensus 191 Dyd~~~~~A~~~kPklIi~G~SaY~r~id~---~~~reIAd~vGA~L 234 (490)
T 3ou5_A 191 DYNQLALTARLFRPRLIIAGTSAYARLIDY---ARMREVCDEVKAHL 234 (490)
T ss_dssp CHHHHHHHHHHHCCSEEEECCSSCCSCCCH---HHHHHHHHHHTCEE
T ss_pred cHHHHHHHHhhcCCCeEEECCccCccccCH---HHHHHHHhhcccEE
Confidence 468899999999999999999876654443 12345555544433
No 200
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=38.24 E-value=34 Score=17.62 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCcee
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAF 45 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~ 45 (81)
+...-++.|++.+-||+.+......+..+.+
T Consensus 30 ~~~eAl~~A~e~~LDLVevsp~a~PPVCkIm 60 (78)
T 1tif_A 30 SKQEALEIAARRNLDLVLVAPNAKPPVCRIM 60 (78)
T ss_dssp EHHHHHHHHHHTTCEEEEEETTSSSCEEEEE
T ss_pred cHHHHHHHHHHcCCCEEEECCCCCCCEEEEe
Confidence 4566788999999999999887666655543
No 201
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=38.14 E-value=39 Score=22.18 Aligned_cols=44 Identities=23% Similarity=0.287 Sum_probs=29.0
Q ss_pred HhcCCCEEEEcccCCCCCCce--ecCcHHHHH-hhhCCccEEEECCC
Q 038513 24 EQMHIDLLVVGSRGLGKVKRA--FLGSVSDYC-AHHAVCPILIVKPP 67 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~~~--~~gs~~~~v-i~~~~~Pvlvv~~~ 67 (81)
++.++|.+++|+..-...... -.|+-.-.+ .++..+|++|+-+.
T Consensus 224 ~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap~ 270 (347)
T 1t9k_A 224 KRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPV 270 (347)
T ss_dssp HTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred hcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEeccc
Confidence 445699999999874333222 257766554 45556999999543
No 202
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=37.93 E-value=39 Score=16.69 Aligned_cols=47 Identities=4% Similarity=-0.007 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
+...+..++..+|++++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 35 ~~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 35 STALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeCC
Confidence 34445556668999999875322 111 1234444444 46898888654
No 203
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=37.90 E-value=44 Score=21.76 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=34.7
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCC-CCceecCcHHHHHhh-hCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGK-VKRAFLGSVSDYCAH-HAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~-~~~~~~gs~~~~vi~-~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-...... ..+--+=..-+.|.. .++.|+++..-+
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 103 NTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 44454 4577888999999887664433 222111233457788 789999987644
No 204
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=37.90 E-value=41 Score=22.37 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHhcCCCEEEEcccCCCCCCce--ecCcHHHHH-hhhCCccEEEECCC
Q 038513 23 VEQMHIDLLVVGSRGLGKVKRA--FLGSVSDYC-AHHAVCPILIVKPP 67 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~~~~--~~gs~~~~v-i~~~~~Pvlvv~~~ 67 (81)
.++.++|.+++|+..-...... -.|+-.-.+ .++..+|++|+-+.
T Consensus 248 M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~ 295 (374)
T 2yvk_A 248 MKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPL 295 (374)
T ss_dssp HHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred hhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEeccc
Confidence 3445799999999874332222 257766555 45556999998543
No 205
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=37.53 E-value=21 Score=25.15 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh-hCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH-HAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~-~~~~Pvlvv~~~ 67 (81)
.-|.+.|++.++++++|+|.+......... .+-.+.+.+-+ ...+||++--..
T Consensus 135 ~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVGGa~ 188 (579)
T 3bul_A 135 MVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIGGAT 188 (579)
T ss_dssp SBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEESTT
T ss_pred CCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEEccc
Confidence 368999999999999999999875432221 11222333322 235888876543
No 206
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=37.40 E-value=25 Score=20.58 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
+....|++.|++.++|||+---.+....
T Consensus 101 El~~~i~~lA~~v~adliI~pL~~E~~~ 128 (153)
T 2k4m_A 101 EIHSSLMRVADAVGARLIIKPLTGEDIV 128 (153)
T ss_dssp TTHHHHHHHHHHHTCEEEEECBTTBCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcCC
Confidence 6778899999999999999877766543
No 207
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=37.38 E-value=38 Score=20.78 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+..++.++|+||+...++ .+ ...++...+..++=+++.
T Consensus 90 ~~~~~~~l~~~~~Dliv~agy~~-----IL----~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 90 DAALAERLQAYGVDLVCLAGYMR-----LV----RGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp HHHHHHHHHHTTCSEEEESSCCS-----CC----CHHHHHHSTTCEEEEESS
T ss_pred cHHHHHHHHhcCCCEEEEcChhH-----hC----CHHHHhhccCCEEEEccC
Confidence 36788888899999999976532 11 456667766667766544
No 208
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=37.26 E-value=30 Score=20.05 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCCEEEEccc
Q 038513 16 RDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~ 36 (81)
.+.|.++.++.++|+|++=--
T Consensus 33 ~~~i~~~i~~~~pDIi~LQEv 53 (256)
T 4fva_A 33 MKAVAHIVKNVNPDILFLQEV 53 (256)
T ss_dssp HHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEec
Confidence 457889999999999998654
No 209
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=37.24 E-value=18 Score=24.46 Aligned_cols=51 Identities=18% Similarity=0.263 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--------CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--------VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--------~~Pvlvv~~~~ 68 (81)
+..++|.+..+.+++++|++-+.-.+.+ +|...+.+++.. .+||+.++.+.
T Consensus 79 ~L~~~I~~~~~~~~P~~I~V~tTC~~e~----IGdDi~~v~~~~~~~~~~~~~~pVi~v~tpg 137 (458)
T 3pdi_B 79 NVVEALKTICERQNPSVIGLLTTGLSET----QGCDLHTALHEFRTQYEEYKDVPIVPVNTPD 137 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHT----TCTTHHHHHHHTTTSCCSCSCSCEEEECCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHH----hcCCHHHHHHHHHHhccccCCCeEEEeeCCC
Confidence 4678888999999999999988865443 477777777665 68999997543
No 210
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=37.24 E-value=48 Score=17.53 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~~ 68 (81)
+..++..++..+|++++...-.. ...+ ...+.+-.. ..+|++++-...
T Consensus 39 ~~al~~~~~~~~dlvllD~~lp~-~~g~---~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVRMPR-MDGI---ELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEECCST
T ss_pred HHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCcEEEEeCCC
Confidence 44445666778999999866322 1111 234444433 358999886543
No 211
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=37.16 E-value=57 Score=18.43 Aligned_cols=43 Identities=7% Similarity=-0.107 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCCEEEEccc--CCCC-CCceecCcHHHHHhhhCCccEE
Q 038513 17 DVICQAVEQMHIDLLVVGSR--GLGK-VKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~--~~~~-~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
..|.+..++.++||||--.. +..+ ... |....+..-.-.+|++
T Consensus 64 p~I~d~I~~geIdlVInt~~pl~~~~h~~D---~~~IrR~A~~~~IP~~ 109 (134)
T 2xw6_A 64 QQMGARVAEGRILAVIFFRDPLTAQPHEPD---VQALLRVCDVHGVPLA 109 (134)
T ss_dssp HHHHHHHHTTCEEEEEEECCTTTCCTTSCC---SHHHHHHHHHHTCCEE
T ss_pred chHHHHHHCCCccEEEEccCcccCCCccch---HHHHHHHHHHcCCCeE
Confidence 47999999999999998766 3222 111 4445555555666665
No 212
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=37.06 E-value=37 Score=20.53 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+..++.++|++|+...++ .+ ...++...+..++=+++.
T Consensus 68 ~~~~~~~l~~~~~Dliv~agy~~-----il----~~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 68 DRELIHEIDMYAPDVVVLAGFMR-----IL----SPAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp HHHHHHHHGGGCCSEEEESSCCS-----CC----CHHHHHHTTTSEEEEESS
T ss_pred cHHHHHHHHhcCCCEEEEeChhh-----hC----CHHHHhhccCCEEEEccC
Confidence 36788888999999999976532 11 456666666677766654
No 213
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=37.01 E-value=67 Score=19.21 Aligned_cols=50 Identities=8% Similarity=0.011 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+..+.+.+.+++.++....++.+...-.--....++.+.+++||+..-
T Consensus 154 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~G 203 (252)
T 1ka9_F 154 AVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASG 203 (252)
T ss_dssp HHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHcCCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeC
Confidence 34556666677999887754444322211111356777888899998864
No 214
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=36.99 E-value=16 Score=24.57 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC--------CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA--------VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~--------~~Pvlvv~~~~ 68 (81)
+..++|.+..+..++++|++-+.-.+.+ +|...+.+++.. .+||+.+..+.
T Consensus 83 ~L~~aI~~~~~~~~P~~I~V~tTC~~e~----IGdDi~~v~~~~~~~~~~~~~~pvi~v~tpg 141 (458)
T 1mio_B 83 NIKTAVKNIFSLYNPDIIAVHTTCLSET----LGDDLPTYISQMEDAGSIPEGKLVIHTNTPS 141 (458)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEECHHHHH----HTCCHHHHHHHHHHTTCSCTTCEEEEECCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcHHHH----HhcCHHHHHHHHHHhcCCCCCCeEEEEECCC
Confidence 4677888888899999999887755433 455566665555 78999987653
No 215
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=36.92 E-value=18 Score=19.54 Aligned_cols=46 Identities=9% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~ 66 (81)
+...+..++..+|+|++...-.. ...+ ...+.+-.. ..+|++++-.
T Consensus 37 ~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 37 TEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 34445555678999999876322 1111 223444433 3589998854
No 216
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=36.90 E-value=46 Score=17.28 Aligned_cols=47 Identities=9% Similarity=0.032 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~ 67 (81)
+...+..++..+|+|++...-.. ... -...+.+-. ...+|++++-..
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVG-MDG---FSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTT-SCH---HHHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEecccCC-CcH---HHHHHHHHhCccccCCcEEEEeCC
Confidence 44455556678999999876432 111 123444443 345899888543
No 217
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=36.83 E-value=51 Score=21.02 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
-...+++.|.+++++-||+|+-|-+.+
T Consensus 199 rir~vL~iA~~~g~~~LVLGA~GCGvf 225 (277)
T 3sig_A 199 RAAKVLAAARHHGHRRLVLGAWGCGVF 225 (277)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSTT
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCcC
Confidence 345678899999999999999986643
No 218
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=36.83 E-value=37 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCCEEEEcccC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.+++.+..++.++|+||+...+
T Consensus 170 ~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 170 FAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHHHHHhCCCEEEHhHhh
Confidence 3578899999999999998764
No 219
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=36.83 E-value=53 Score=20.17 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=14.6
Q ss_pred HHhcCCCEEEEcccCCCCC
Q 038513 23 VEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~ 41 (81)
.++.++|.||+|-.+...+
T Consensus 170 ~~~~gad~IVLGCTh~p~l 188 (245)
T 3qvl_A 170 LKEDGSGAIVLGSGGMATL 188 (245)
T ss_dssp HHHSCCSEEEECCGGGGGG
T ss_pred HHhcCCCEEEECCCChHHH
Confidence 3457899999999876644
No 220
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=36.76 E-value=34 Score=21.79 Aligned_cols=42 Identities=19% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+++.+..+++++|++|+....+ .+ +..+++..+-.++=+++
T Consensus 154 ~~~~~~~l~~~~~Dlivlagym~-----il----~~~~l~~~~~~~iNiHp 195 (287)
T 3nrb_A 154 ESQIKNIVTQSQADLIVLARYMQ-----IL----SDDLSAFLSGRCINIHH 195 (287)
T ss_dssp HHHHHHHHHHHTCSEEEESSCCS-----CC----CHHHHHHHTTSEEEEES
T ss_pred HHHHHHHHHHhCCCEEEhhhhhh-----hc----CHHHHhhccCCeEEECc
Confidence 35688999999999999987642 11 34555555555555544
No 221
>3cwc_A Putative glycerate kinase 2; structural genomics, center for structural genomics of infec diseases, csgid, IDP122, transferase; 2.23A {Salmonella typhimurium LT2}
Probab=36.74 E-value=38 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.304 Sum_probs=23.7
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEEC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVK 65 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~ 65 (81)
++||+|.|--.-.. +.+.|.+...|.+ +..+||+++-
T Consensus 287 ~ADLVITGEG~~D~--Qtl~GK~p~gVa~~A~~~~vPviaia 326 (383)
T 3cwc_A 287 DADLVITGEGRIDS--QTIHGKVPIGVANIAKRYNKPVIGIA 326 (383)
T ss_dssp HCSEEEECCEESCC------CHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECCCCCcC--cCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 69999998654332 3355877766655 4469999985
No 222
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=36.71 E-value=71 Score=19.39 Aligned_cols=44 Identities=11% Similarity=-0.053 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++.....++|-|++......... ..-+-+....+||+++-...
T Consensus 50 ~i~~l~~~~vdgiIi~~~~~~~~~------~~~~~~~~~~iPvV~~~~~~ 93 (313)
T 3m9w_A 50 QIENMINRGVDVLVIIPYNGQVLS------NVVKEAKQEGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHTTCSEEEEECSSTTSCH------HHHHHHHTTTCEEEEESSCC
T ss_pred HHHHHHHcCCCEEEEeCCChhhhH------HHHHHHHHCCCeEEEECCcC
Confidence 445555567887777654332211 12344567789999996543
No 223
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=36.68 E-value=36 Score=18.00 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHh-cCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 13 GDARDVICQAVEQ-MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~-~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
.+..+++....+. ..+|+|++...-.. ... -...+.+-... .+|++++-..
T Consensus 52 ~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 52 VGRAAQIVQRTDGLDAFDILMIDGAALD-TAE---LAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp CCCHHHHTTCHHHHTTCSEEEEECTTCC-HHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccH---HHHHHHHHHhCCCCcEEEEeCC
Confidence 3555566666665 78999999866322 111 12233443333 4888888643
No 224
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=36.54 E-value=34 Score=21.85 Aligned_cols=41 Identities=7% Similarity=0.012 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+++.+..+++++|++|+....+- + +..++...+-.++=++
T Consensus 160 ~~~~~~~l~~~~~Dlivla~y~~i-----l----~~~~l~~~~~~~iNiH 200 (292)
T 3lou_A 160 EAQWLDVFETSGAELVILARYMQV-----L----SPEASARLANRAINIH 200 (292)
T ss_dssp HHHHHHHHHHHTCSEEEESSCCSC-----C----CHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHHhCCCEEEecCchhh-----C----CHHHHhhhcCCeEEeC
Confidence 357889999999999999876421 1 3455555555555554
No 225
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=36.45 E-value=34 Score=21.79 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+++.+..+++++|+||+....+- + +..++...+-.++=++
T Consensus 155 ~~~~~~~l~~~~~Dlivlagy~~i-----l----~~~~l~~~~~~~iNiH 195 (288)
T 3obi_A 155 EAAITALIAQTHTDLVVLARYMQI-----L----SDEMSARLAGRCINIH 195 (288)
T ss_dssp HHHHHHHHHHHTCCEEEESSCCSC-----C----CHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHhcCCCEEEhhhhhhh-----C----CHHHHhhhcCCeEEeC
Confidence 357889999999999999866421 1 3455555554555444
No 226
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=36.45 E-value=49 Score=19.37 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=25.3
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++..+|++++...-.. ...+ .....+-....+|++++-..
T Consensus 43 ~~l~~~~~dlvilD~~l~~-~~g~---~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 43 TAVRELRPDLVLLDLMLPG-MNGI---DVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp HHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHTTCCCCEEEEEET
T ss_pred HHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCCcEEEEeCC
Confidence 4445568999999866322 1111 23445544457999988543
No 227
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=36.42 E-value=33 Score=21.45 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.|.+..++.++|+|+.-..+.........+..+...++....|++...
T Consensus 136 l~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~e 186 (273)
T 3dff_A 136 VADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLWE 186 (273)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEec
Confidence 445677788999999999954443444455556667777777888877764
No 228
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=36.42 E-value=79 Score=21.74 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC-ccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV-CPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~-~Pvlvv~~~ 67 (81)
....+.|.+.++. ||.-+.+ |+++..+.+.-| ||++.+-+.
T Consensus 364 ~aa~~~a~~~~a~-Iv~~T~S---------G~tA~~vsr~RP~~pIia~T~~ 405 (461)
T 3qtg_A 364 KGLVELAQDLGAN-ILVFSMS---------GTLARRIAKFRPRGVVYVGTPN 405 (461)
T ss_dssp HHHHHHHHHHTCE-EEEECSS---------SHHHHHHHTTCCSSCEEEEESC
T ss_pred HHHHHHHHhcCCC-EEEECCC---------cHHHHHHHhhCCCCCEEEeCCC
Confidence 3445567788888 6665542 888999988877 999998654
No 229
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=36.33 E-value=27 Score=20.37 Aligned_cols=51 Identities=14% Similarity=0.029 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhh--hCCccEEEECCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAH--HAVCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~--~~~~Pvlvv~~~ 67 (81)
..+..+++...++...+|++++.-.-.. .. | .....+-. ...+|++++-..
T Consensus 39 ~~~~~~~~~~~~~~~~~dlvllD~~mp~-~~----G~~~~~~lr~~~~~~~~ii~lt~~ 92 (225)
T 3klo_A 39 PFSELWLEENKPESRSIQMLVIDYSRIS-DD----VLTDYSSFKHISCPDAKEVIINCP 92 (225)
T ss_dssp CGGGHHHHTTCSGGGGCCEEEEEGGGCC-HH----HHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred eCCcHHHHHHHhhccCCCEEEEeCCCCC-CC----HHHHHHHHHHhhCCCCcEEEEECC
Confidence 3455566666566778999999765322 11 2 22344443 356899988543
No 230
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=36.32 E-value=49 Score=18.63 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
.+.+..... ++|.||+|+.-..
T Consensus 47 ~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 47 LQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHH--hCCEEEEEcCcCC
Confidence 444444344 6899999987654
No 231
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=36.15 E-value=40 Score=20.34 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++.+..++.++|+||+...++ .+ ...++...+..++=+++.
T Consensus 69 ~~~~~~l~~~~~Dliv~a~y~~-----il----~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 69 SAIDLVLEEFSIDIVCLAGFMR-----IL----SGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp HHHHHHHHHTTCCEEEEESCCS-----CC----CHHHHHHTTTSEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEcchhh-----hC----CHHHHhhhcCCEEEEccC
Confidence 5688888899999999986532 11 456666666666766544
No 232
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=36.15 E-value=28 Score=26.39 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh--------CCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH--------AVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~--------~~~Pvlvv~~~~ 68 (81)
.+.+.++++.+++++|++|.. +.-...|...+. .++.. .++++.+|....
T Consensus 567 ~~~l~~li~~~~~~~IaIGn~--s~et~~l~~~l~-~~i~~~~~~~~~~~~i~~~iV~e~g 624 (1030)
T 3psf_A 567 EDTLDNIIQSCQPNAIGINGP--NPKTQKFYKRLQ-EVLHKKQIVDSRGHTIPIIYVEDEV 624 (1030)
T ss_dssp HHHHHHHHHHHCCSEEEECCS--STHHHHHHHHHH-HHHHHTTCBCTTSCBCCEEECCCTT
T ss_pred HHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHH-HHHHhhccccccCCCccEEEecchH
Confidence 378889999999999999963 222222222222 22221 358999997654
No 233
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=36.09 E-value=35 Score=15.70 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=17.2
Q ss_pred EEEEEec-CCHHHHHHHHHHhcCCCE
Q 038513 6 AQTLILD-GDARDVICQAVEQMHIDL 30 (81)
Q Consensus 6 ~~~~~~~-g~~~~~I~~~a~~~~~dl 30 (81)
+...+.. -+-.++|+++|++.+.|-
T Consensus 12 vslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCCchhHHHHHHHHHccchh
Confidence 3333333 367889999999988763
No 234
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=35.93 E-value=33 Score=19.85 Aligned_cols=20 Identities=10% Similarity=0.297 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCCEEEEcc
Q 038513 16 RDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~ 35 (81)
.+.|.++.++.++|+|++=-
T Consensus 29 ~~~i~~~i~~~~pDIi~LQE 48 (256)
T 4gz1_A 29 ARGVCSCLALYSPDVVFLQE 48 (256)
T ss_dssp HHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEc
Confidence 56789999999999998854
No 235
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=35.90 E-value=70 Score=19.06 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=24.8
Q ss_pred HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 22 AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...+.++|||+...... ......-++...+||++++.
T Consensus 54 ~i~~l~PDlIi~~~~~~--------~~~~~~~L~~~gipvv~~~~ 90 (255)
T 3md9_A 54 GILAMKPTMLLVSELAQ--------PSLVLTQIASSGVNVVTVPG 90 (255)
T ss_dssp HHHTTCCSEEEEETTCS--------CHHHHHHHHHTTCEEEEECC
T ss_pred HHHccCCCEEEEcCCcC--------chhHHHHHHHcCCcEEEeCC
Confidence 33456999999875421 12334556788899999964
No 236
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=35.88 E-value=35 Score=21.68 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+++.+..+++++|++|+...++- + +..++...+-.++=+++
T Consensus 155 ~~~~~~~l~~~~~Dlivla~y~~i-----l----~~~~l~~~~~~~iNiHp 196 (286)
T 3n0v_A 155 ERKVLQVIEETGAELVILARYMQV-----L----SPELCRRLDGWAINIHH 196 (286)
T ss_dssp HHHHHHHHHHHTCSEEEESSCCSC-----C----CHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEecccccc-----c----CHHHHhhhcCCeEEecc
Confidence 357889999999999999866421 1 44555655555555543
No 237
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=35.82 E-value=44 Score=18.85 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=22.3
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..|.+|+|+- .-|.++...+.+...+|+|+-..
T Consensus 2 t~dV~IIGaG--------paGL~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 2 TVPIAIIGTG--------IAGLSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CCCEEEECCS--------HHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCEEEECcC--------HHHHHHHHHHHHCCCCEEEEECC
Confidence 3577777755 23666777777777888887543
No 238
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=35.31 E-value=48 Score=17.00 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
.+..+ ..+..+++.+|++++...-.. ...+ ...+++-.. ..+|++++-..
T Consensus 33 ~~~~~-al~~l~~~~~dlvllD~~~p~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 33 ENGQI-ALEKLSEFTPDLIVLXIMMPV-MDGF---TVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp SSHHH-HHHHHTTBCCSEEEECSCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESC
T ss_pred CCHHH-HHHHHHhcCCCEEEEeccCCC-CcHH---HHHHHHHhcccccCCCEEEEecC
Confidence 34444 445567789999999765321 1110 223333322 35899988653
No 239
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=35.17 E-value=58 Score=19.46 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=11.5
Q ss_pred HHhhhCCccEEEECCC
Q 038513 52 YCAHHAVCPILIVKPP 67 (81)
Q Consensus 52 ~vi~~~~~Pvlvv~~~ 67 (81)
+.+....+|++.+...
T Consensus 80 ~~~~~~~iPvV~~~~~ 95 (291)
T 3l49_A 80 QKINDAGIPLFTVDTA 95 (291)
T ss_dssp HHHHHTTCCEEEESCC
T ss_pred HHHHHCCCcEEEecCC
Confidence 3456678999998654
No 240
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=35.17 E-value=50 Score=17.13 Aligned_cols=47 Identities=6% Similarity=-0.041 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
++..+..++..+|+|++...-.. ...+ ...+.+-+.. .+|++++-..
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISAF 88 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEecC
Confidence 33445556678999999876332 1110 2233443333 4788887544
No 241
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=35.10 E-value=27 Score=25.58 Aligned_cols=49 Identities=8% Similarity=0.188 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
..+.+.++++.+++++|++|....+.-... ....++.. .++|++++.+.
T Consensus 371 ~~~~l~~li~~~~~~~IaIGngtasret~~----~v~~l~~~~~~~~i~~v~v~e~ 422 (785)
T 3bzc_A 371 TLAVLAALCAKHQVELIAIGNGTASRETDK----LAGELIKKYPGMKLTKIMVSEA 422 (785)
T ss_dssp HHHHHHHHHHHHTCCEEEEESSTTHHHHHH----HHHHHHHHCGGGCCEEEEECCH
T ss_pred HHHHHHHHHHHcCCCEEEECCCccCHHHHH----HHHHHHHhcccCCCCEEEEcCC
Confidence 346789999999999999997433322222 23344433 35888888753
No 242
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=34.69 E-value=62 Score=18.55 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
.+.+.+.+++.++|+++.|.......
T Consensus 128 ~~~l~~~~~~~~~~~vi~GHtH~~~~ 153 (195)
T 1xm7_A 128 QEMVREIYFKENCDLLIHGHVHWNRE 153 (195)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCCSC
T ss_pred HHHHHHHHHHcCCcEEEECCcCCCCc
Confidence 46788888888999999998866544
No 243
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=34.64 E-value=49 Score=18.59 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=20.1
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhh--hCCccEEEECC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAH--HAVCPILIVKP 66 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~--~~~~Pvlvv~~ 66 (81)
++|.|++|+.-..+. .-.-...+.+.. ....++.++-.
T Consensus 51 ~~d~ii~Gspty~g~--~p~~~fl~~l~~~~l~gk~v~~fgs 90 (161)
T 3hly_A 51 SARGIVLGTPPSQPS--EAVATALSTIFAAAHNKQAIGLFDS 90 (161)
T ss_dssp HCSEEEEECCBSSCC--HHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred hCCEEEEEcCCcCCc--hhHHHHHHHHHhhhhCCCEEEEEEc
Confidence 589999998765321 110112223322 24577777754
No 244
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=34.08 E-value=74 Score=18.79 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
..+.+++.+++.++|+|++..-
T Consensus 20 ~~~~~l~~~~~~~~D~vi~~GD 41 (260)
T 2yvt_A 20 LLPKLKGVIAEKQPDILVVVGN 41 (260)
T ss_dssp GHHHHHHHHHHHCCSEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEECCC
Confidence 4577888887789999988654
No 245
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=33.99 E-value=37 Score=21.90 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
..+.|.+.+++.++|+|++|.+.
T Consensus 74 ~a~~La~li~~~~pdlVL~g~ts 96 (315)
T 1efv_A 74 LTPLILATQKQFNYTHICAGASA 96 (315)
T ss_dssp HHHHHHHHHHHHCCSEEEEESSH
T ss_pred HHHHHHHHHHhcCCCEEEEcCCC
Confidence 35667788888899999999854
No 246
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=33.95 E-value=20 Score=24.38 Aligned_cols=60 Identities=10% Similarity=-0.120 Sum_probs=37.1
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
....+..|++.+.|.+++++.+++-|+.-..-... .. -.-....+.+....+++..+...
T Consensus 79 ~~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~-~~-~rd~~v~~~l~~~gi~~~~~~~~ 138 (489)
T 1np7_A 79 NKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQE-EL-DVERNLVKQLTILGIEAKGYWGS 138 (489)
T ss_dssp CCEEEEESCHHHHHHHHHHHTTEEEEEEECCCSHH-HH-HHHHHHHHHHHHHTCEEEEECCS
T ss_pred CcEEEEECCHHHHHHHHHHHcCCCEEEEecccCHH-HH-HHHHHHHHHHHhcCCeEEEecCC
Confidence 34456679999999999999999988876432211 11 11222334444556777776543
No 247
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=33.94 E-value=31 Score=26.63 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh--------CCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH--------AVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~--------~~~Pvlvv~~~~ 68 (81)
.+.+.++++.+++++|++|..+ .-...|...+. .++.. .++++.+|.+..
T Consensus 564 ~~~l~~li~~~~~~vIaIGn~s--ret~~l~~~l~-~~i~~~~~~~~~~~~i~vviV~e~g 621 (1219)
T 3psi_A 564 EDTLDNIIQSCQPNAIGINGPN--PKTQKFYKRLQ-EVLHKKQIVDSRGHTIPIIYVEDEV 621 (1219)
T ss_dssp HHHHHHHHHHHCCSEEEECCSS--THHHHHHHHHH-HHHHHTTCBCSSSCBCCEEECCCTT
T ss_pred HHHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHH-HHHHhhccccccCCCccEEEECchH
Confidence 3788899999999999999732 21222222222 22221 358999998654
No 248
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=33.85 E-value=68 Score=18.31 Aligned_cols=32 Identities=13% Similarity=0.057 Sum_probs=16.2
Q ss_pred cceEEEEEecCCHHHHHHH----HHHhcCCCEEEEc
Q 038513 3 QVNAQTLILDGDARDVICQ----AVEQMHIDLLVVG 34 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~----~a~~~~~dliVmG 34 (81)
|.++.......|-.+.|.+ .++..++|+|+..
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4444444444443344443 3332479988774
No 249
>2cun_A Phosphoglycerate kinase; structural genomics, tanpaku 3000, structural genomics/proteomics initiative, RSGI, NPPSFA; HET: 3PG; 2.10A {Pyrococcus horikoshii}
Probab=33.65 E-value=61 Score=21.98 Aligned_cols=46 Identities=2% Similarity=-0.091 Sum_probs=35.2
Q ss_pred HHHHhcCCCEEEEcccCCCCC-CceecCcHHHHHhhhCCccEEEECC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKV-KRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~-~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++-+.++-+|+|.+.|+.+- ..+.+..+++++-+...+||-.+++
T Consensus 43 ~~ll~~gakVvl~SHlGRPG~~~~~SL~pva~~L~~lLg~~V~f~~d 89 (410)
T 2cun_A 43 RYLIESGAKVVIGTHQGKPYSEDYTTTEEHARVLSELLDQHVEYIED 89 (410)
T ss_dssp HHHHHTTCEEEEECCCSCTTCTTCCCSHHHHHHHHHHHTSCEEECSC
T ss_pred HHHHHCCCEEEEEcCCCCCCCCCCcCHHHHHHHHHHHHCCCCeeCCC
Confidence 344456899999998888742 3445778899999999999998864
No 250
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=33.59 E-value=71 Score=18.46 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=33.1
Q ss_pred cceEEEEEecCC-HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 3 QVNAQTLILDGD-ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 3 ~v~~~~~~~~g~-~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
|++++....... -...|.+..++.++||||--....+.-...-=|....+..-.-.+|++
T Consensus 57 Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 57 GMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp CCCCEEECCGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE
T ss_pred CceeEEEEecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE
Confidence 556654432111 234799999999999999876521111101113334555555566665
No 251
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=33.57 E-value=68 Score=22.00 Aligned_cols=48 Identities=6% Similarity=-0.080 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCC----CCCc---eecCcHHHHHhhhCCccE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLG----KVKR---AFLGSVSDYCAHHAVCPI 61 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~----~~~~---~~~gs~~~~vi~~~~~Pv 61 (81)
...+++++.|++.+.-+|+-.+.+.- +... ..+......+..++.+|+
T Consensus 32 e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv 86 (450)
T 3txv_A 32 LVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPR 86 (450)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCc
Confidence 46889999999999999988776542 1111 234566778888899995
No 252
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=33.55 E-value=48 Score=20.32 Aligned_cols=56 Identities=5% Similarity=-0.148 Sum_probs=34.3
Q ss_pred EEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 8 TLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 8 ~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+..++|.+....|.+. ++|-+.+---..+.-.+...-...+++...+..|+.+=
T Consensus 26 ~~~~~~dP~~~a~~~~~~-gad~lhvvDld~a~~~~~~~~~~i~~i~~~~~~pl~vG 81 (243)
T 4gj1_A 26 KKVYKYNPLKKFKEYEKA-GAKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVG 81 (243)
T ss_dssp EEECCCCHHHHHHHHHHH-TCCEEEEEEHHHHHCGGGCCHHHHHHHHHHCCSEEEEE
T ss_pred CcEeCCCHHHHHHHHHHC-CCCEEEEEecCcccccchhHHHHHHHHHHhcCCCeEec
Confidence 334567999988888775 78866653221111111112255678889999998874
No 253
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=33.53 E-value=79 Score=18.94 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.++.....++|-|++.......... .. +-+. ..+||+++-
T Consensus 55 ~~~~~~~~~vdgiii~~~~~~~~~~-----~~-~~~~-~~iPvV~~~ 94 (304)
T 3o1i_D 55 QLALCTQWGANAIILGTVDPHAYEH-----NL-KSWV-GNTPVFATV 94 (304)
T ss_dssp HHHHHHHHTCSEEEECCSSTTSSTT-----TH-HHHT-TTSCEEECS
T ss_pred HHHHHHHcCCCEEEEeCCChhHHHH-----HH-HHHc-CCCCEEEec
Confidence 4455555688888877554332222 22 3344 789999984
No 254
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=33.52 E-value=28 Score=20.83 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
...+..++.++|.||++-...+.+ .+.+-...++||+=
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~~~--------~~~l~~~~~iPvi~ 102 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAHAF--------VEDIRKAIKIPIIS 102 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGGGG--------HHHHHHHCSSCBCC
T ss_pred HHHHHHHHcCCCEEEEcCccHHHH--------HHHHHHhCCCCEec
Confidence 344555677999999987754321 34555555677663
No 255
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.49 E-value=59 Score=17.46 Aligned_cols=47 Identities=6% Similarity=0.095 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
++..+..++..+|+|++...-.. ...+ ...+.+-.. ..+|++++-..
T Consensus 41 ~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 41 REAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEECC
Confidence 44455667778999999876322 1110 223333332 46899988643
No 256
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=33.17 E-value=53 Score=16.88 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
+..++..+|+|++...-.. ... -...+.+-+.. .+|++++-..
T Consensus 40 ~~~~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 40 QRVETLKPDIVIIDVDIPG-VNG---IQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHHHHCCSEEEEETTCSS-SCH---HHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHhcCCCEEEEecCCCC-CCh---HHHHHHHHhcCCCCeEEEEeCC
Confidence 3445568999999876432 111 12234444333 4888888654
No 257
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=33.01 E-value=21 Score=24.59 Aligned_cols=59 Identities=5% Similarity=0.064 Sum_probs=36.8
Q ss_pred EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC--ccEEEECCC
Q 038513 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV--CPILIVKPP 67 (81)
Q Consensus 7 ~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~--~Pvlvv~~~ 67 (81)
...+..|++.+.|.+++++++++-|+.-..-.. .... .-....+.+.... |++..+...
T Consensus 115 ~L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~p-~~~~-rd~~v~~~l~~~gv~i~~~~~~~~ 175 (525)
T 2j4d_A 115 NLLIRSGKPEEILPSLAKDFGARTVFAHKETCS-EEVD-VERLVNQGLKRVGNSTKLELIWGS 175 (525)
T ss_dssp CCEEEESCHHHHHHHHHHHHTCSEEEEECCCSH-HHHH-HHHHHHHHHHTTCSSCEEEEECCS
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEeccCCH-HHHH-HHHHHHHHHHhcCCceEEEEecCC
Confidence 345567999999999999999999888643221 1111 1222334444455 677776544
No 258
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=32.86 E-value=56 Score=22.08 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=36.3
Q ss_pred HHHHhcCCCEEEEcccCCCC---CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGK---VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~---~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++-+.++-+|+|.+.|+.. -..+.+..+++++-+...+||-.+++-
T Consensus 44 ~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~lLg~~V~f~~d~ 93 (398)
T 1vpe_A 44 KYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAV 93 (398)
T ss_dssp HHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHHHTSCCEEESCS
T ss_pred HHHHHCCCEEEEEccCCCCCCCcCCccCHHHHHHHHHHHHCCCceeCCCC
Confidence 34555689999999988873 244567888999999999999988753
No 259
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=32.71 E-value=61 Score=17.44 Aligned_cols=51 Identities=6% Similarity=0.130 Sum_probs=27.5
Q ss_pred cCCHHHHHHHHHHhc--CCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 12 DGDARDVICQAVEQM--HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~--~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
..+..+.+ +..++. .+|+|++...-.. ...+ ...+.+-... .+|++++-..
T Consensus 67 ~~~~~~al-~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 67 AADGEEAV-IKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp ESSHHHHH-HHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred ECCHHHHH-HHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEecc
Confidence 34444444 444455 7899999876332 1111 2234444433 4888888644
No 260
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=32.56 E-value=73 Score=18.25 Aligned_cols=32 Identities=9% Similarity=0.200 Sum_probs=15.9
Q ss_pred cceEEEEEecCCHHHHHH----HHHHhcCCCEEEEc
Q 038513 3 QVNAQTLILDGDARDVIC----QAVEQMHIDLLVVG 34 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~----~~a~~~~~dliVmG 34 (81)
|.++......+|-.+.|. +.+++.++|+|+..
T Consensus 44 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 44 GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp TCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 344444444444334443 33332379998774
No 261
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=32.55 E-value=56 Score=16.98 Aligned_cols=48 Identities=4% Similarity=-0.011 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~~ 68 (81)
+...+..++..+|+|++...-.. ... -...+.+-+ ...+|++++-...
T Consensus 41 ~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 41 GQCIDLLKKGFSGVVLLDIMMPG-MDG---WDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp HHHHHHHHTCCCEEEEEESCCSS-SCH---HHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred HHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhhcccCCCCEEEEECCC
Confidence 44555666778999999876332 111 023444443 2458999886543
No 262
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=32.50 E-value=62 Score=20.86 Aligned_cols=28 Identities=11% Similarity=0.153 Sum_probs=19.3
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+|.||+=+.. ....+.+.+++.+||+=-
T Consensus 92 ~D~iviR~~~---------~~~~~~lA~~~~vPVINa 119 (307)
T 3tpf_A 92 VDFVMMRVNK---------HETLLEFARYSKAPVINA 119 (307)
T ss_dssp SSEEEEECSC---------HHHHHHHHHHCSSCEEEE
T ss_pred CCEEEEecCC---------hHHHHHHHHhCCCCEEeC
Confidence 8888885432 245678888899996533
No 263
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=32.39 E-value=47 Score=19.87 Aligned_cols=34 Identities=3% Similarity=-0.210 Sum_probs=22.7
Q ss_pred HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 24 EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...++|||+..... .......++...+||++++.
T Consensus 57 ~~l~PDLIi~~~~~---------~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 57 KKLKPTHVLSVSTI---------KDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHTCCSEEEEEGGG---------HHHHHHHHHHHTSCCEEECC
T ss_pred HhcCCCEEEecCcc---------CHHHHHHHHHcCCcEEEecC
Confidence 34589999975421 12345667777899998864
No 264
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=32.15 E-value=39 Score=19.56 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCCEEEEccc
Q 038513 16 RDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~ 36 (81)
++.|.+.++ ++|+|++|+.
T Consensus 60 a~~l~~~~~--~p~~Vl~g~t 78 (166)
T 3fet_A 60 SEGILKIAG--NYDYIAIGST 78 (166)
T ss_dssp HHHHHHHHT--TCSEEEEECS
T ss_pred HHHHHHHHc--CCCEEEEcCC
Confidence 456667776 9999999975
No 265
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=32.12 E-value=47 Score=18.38 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCCEEEE
Q 038513 15 ARDVICQAVEQMHIDLLVV 33 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVm 33 (81)
....|.+++++.++|+|+=
T Consensus 102 i~~ai~~vak~~gy~~Vld 120 (143)
T 1u2m_A 102 IQTAVKSVANSQDIDLVVD 120 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEE
Confidence 4567889999999998864
No 266
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=32.04 E-value=1e+02 Score=19.86 Aligned_cols=53 Identities=11% Similarity=0.080 Sum_probs=28.4
Q ss_pred CCHHHHHHH---HHHhcCCCEEEEcccCCCCCCcee-cCcHHHHHhhhCC-ccEEEEC
Q 038513 13 GDARDVICQ---AVEQMHIDLLVVGSRGLGKVKRAF-LGSVSDYCAHHAV-CPILIVK 65 (81)
Q Consensus 13 g~~~~~I~~---~a~~~~~dliVmG~~~~~~~~~~~-~gs~~~~vi~~~~-~Pvlvv~ 65 (81)
.++.+++.+ ..++.++|+||+=+|.--...... ....+..++...+ +.+++--
T Consensus 184 ~d~~e~~~~~v~~lr~~g~D~II~l~H~G~~~d~~~~~~en~~~~~~~v~gID~IlgG 241 (339)
T 3jyf_A 184 NDITETARKYIPEMRAKGADVVVVVAHSGLSADPYQAMAENSVYYLSQVPGVDAIMFG 241 (339)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEEECCCCCCSCCCTTCSCCHHHHTTSTTCCEEEEC
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEEeccCccccccccccchhHHHHhhCCCCCEEEeC
Confidence 355555544 445567999998887543222211 1222333444444 7777763
No 267
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=32.02 E-value=51 Score=20.49 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.|.+..++.++|+|+.-..+.........+..+...++....|++...
T Consensus 133 ~~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~e 183 (270)
T 3dfi_A 133 IREDIESMIAECDPTLVLTCVAIGKHPDHKATRDATLLAARERGIPLRLWQ 183 (270)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCChhHHHHHHHHHHHHHHcCCCeeEec
Confidence 456677788999999999864443444455556666777788888876653
No 268
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=31.91 E-value=43 Score=22.27 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcc
Q 038513 15 ARDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~ 35 (81)
-.+.|.++++++++|+++.|.
T Consensus 71 d~~~l~~~a~~~~id~vv~g~ 91 (442)
T 3lp8_A 71 STIEVIQVCKKEKIELVVIGP 91 (442)
T ss_dssp CHHHHHHHHHHTTCCEEEECS
T ss_pred CHHHHHHHHHHhCCCEEEECC
Confidence 458899999999999999874
No 269
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=31.88 E-value=95 Score=19.41 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=31.1
Q ss_pred ceEEEEEecC-CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh-hCCccEEEECCCCC
Q 038513 4 VNAQTLILDG-DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH-HAVCPILIVKPPKE 69 (81)
Q Consensus 4 v~~~~~~~~g-~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~-~~~~Pvlvv~~~~~ 69 (81)
++++...... .-+..+.+.+.+ ++|+||.... .+. +..+...+.. ...+|+.++|.+..
T Consensus 40 ~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GG-DGT-----l~~v~~~l~~~~~~~~l~iiP~Gt~ 100 (304)
T 3s40_A 40 PDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGG-DGT-----VFECTNGLAPLEIRPTLAIIPGGTC 100 (304)
T ss_dssp SEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEEC-HHH-----HHHHHHHHTTCSSCCEEEEEECSSC
T ss_pred CeEEEEEccCcchHHHHHHHhhc-CCCEEEEEcc-chH-----HHHHHHHHhhCCCCCcEEEecCCcH
Confidence 4455444433 344555555443 7887766432 111 1233334443 26799999997654
No 270
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=31.86 E-value=65 Score=21.12 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
|+...--.+....+ +|.||+=+.. ....+.+.+.+++||+
T Consensus 105 gEsl~DTarvLs~~-~D~IviR~~~---------~~~~~~lA~~~~vPVI 144 (339)
T 4a8t_A 105 HETIEDTSRVLSRL-VDILMARVER---------HHSIVDLANCATIPVI 144 (339)
T ss_dssp SSCHHHHHHHHHHH-CSEEEEECSS---------HHHHHHHHHHCSSCEE
T ss_pred CcCHHHHHHHHHHh-CCEEEEecCc---------HHHHHHHHHhCCCCEE
Confidence 43333333333444 8988885432 3456788889999964
No 271
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=31.69 E-value=56 Score=16.65 Aligned_cols=48 Identities=6% Similarity=-0.078 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~~ 68 (81)
++..+..++..+|+|++...-.. ... -...+.+-+ ...+|++++-...
T Consensus 37 ~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 37 TDALHAMSTRGYDAVFIDLNLPD-TSG---LALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSS-SBH---HHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhhhccCCCCEEEEECCc
Confidence 44455566778999999876332 111 122344443 3458999886544
No 272
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=31.58 E-value=19 Score=24.95 Aligned_cols=51 Identities=20% Similarity=0.089 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC----CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA----VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~----~~Pvlvv~~~~ 68 (81)
...+.|.+..+.++.++|++-+.-.+.+ +|...+.+++.. ++||+.++.+.
T Consensus 121 kL~~aI~~~~~~~~P~~I~V~tTC~~ei----IGdDi~~v~~~~~~~~~~pVi~v~tpG 175 (533)
T 1mio_A 121 KLKDAIHEAYEMFHPAAIGVYATCPVGL----IGDDILAVAATASKEIGIPVHAFSCEG 175 (533)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCHHHHH----HTCCHHHHHHHHHHHHSSCEEECCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCHHHH----hcCCHHHHHHHHHHhhCCcEEEEeCCC
Confidence 4677888888889999999987755433 455555555544 79999997653
No 273
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=31.50 E-value=59 Score=16.87 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
+...+..++..+|+++|. +.+++ ...+.+-... .+|++++-..
T Consensus 52 ~~al~~l~~~~~dlvi~~--~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 52 EDGEYLMDIRNYDLVMVS--DKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp HHHHHHHHHSCCSEEEEC--STTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred HHHHHHHHcCCCCEEEEc--CccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 344455566789999921 11111 2233443334 6899888543
No 274
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=31.46 E-value=55 Score=20.45 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
.+.+..++.++|+||+.-...+. ..+.+-...++|++=+
T Consensus 90 ~~~~~L~~~Gad~IVIaCNTah~--------~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 90 RYLHMLEDAGAECIVIPCNTAHY--------WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHTTCSEEECSCSGGGG--------GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHcCCCEEEEeCCCHHH--------HHHHHHHHCCCCEEcc
Confidence 34455667899999998775332 2456666778888765
No 275
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=31.42 E-value=63 Score=20.96 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=20.4
Q ss_pred HHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+....+ +|.||+=+.. ....+.+.+++.+||+
T Consensus 96 rvls~~-~D~iviR~~~---------~~~~~~lA~~~~vPVI 127 (321)
T 1oth_A 96 RVLSSM-ADAVLARVYK---------QSDLDTLAKEASIPII 127 (321)
T ss_dssp HHHHHH-CSEEEEECSC---------HHHHHHHHHHCSSCEE
T ss_pred HHHHHh-CCEEEEeCCC---------hhHHHHHHHhCCCCEE
Confidence 333344 7888885432 3446677888889875
No 276
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=31.35 E-value=1e+02 Score=19.54 Aligned_cols=34 Identities=12% Similarity=0.044 Sum_probs=22.5
Q ss_pred cceEEEEEecCC---HHHHHHHHHHhcCCCEEEEccc
Q 038513 3 QVNAQTLILDGD---ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 3 ~v~~~~~~~~g~---~~~~I~~~a~~~~~dliVmG~~ 36 (81)
++++-..+..+- -...+.+.+.+.++|.|++..+
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 345555444331 2456778888999999998755
No 277
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=31.21 E-value=58 Score=16.70 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~~ 68 (81)
+...+..++..+|+|++...-.. ...+ ...+.+-+. ..+|++++-...
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMDG-MDGY---ALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHSTTTTTCCEEEEESCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCccCCCCEEEEeCCC
Confidence 34445566778999999876322 1110 223334332 368999986543
No 278
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.17 E-value=57 Score=16.64 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHhc-CCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQM-HIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~-~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..+ ..+..++. .+|++++...-......+ ...+.+-.. ..+|++++-..
T Consensus 36 ~~~~~-a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 36 SSGAK-AIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp SSHHH-HHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESS
T ss_pred CCHHH-HHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 34434 44555555 899999987632211111 223444433 35899988544
No 279
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=31.13 E-value=30 Score=20.73 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=14.2
Q ss_pred HHHHHhcCCCEEEEcccCCC
Q 038513 20 CQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~ 39 (81)
.+..++.++|.||++-...+
T Consensus 66 ~~~L~~~g~d~iviaCnTa~ 85 (226)
T 2zsk_A 66 AKALERAGAELIAFAANTPH 85 (226)
T ss_dssp HHHHHHHTCSEEEESSSGGG
T ss_pred HHHHHHcCCCEEEECCCcHH
Confidence 33445678999999877544
No 280
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=30.73 E-value=64 Score=20.52 Aligned_cols=53 Identities=8% Similarity=0.051 Sum_probs=34.4
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCC----CCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGL----GKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~----~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-..-. ..-.+-+ =..-+.|...++.|+++...+
T Consensus 88 ~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l-~~~f~~va~a~~lPiilYn~P 146 (309)
T 3fkr_A 88 STQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQI-FEFYARVSDAIAIPIMVQDAP 146 (309)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHH-HHHHHHHHHHCSSCEEEEECG
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHH-HHHHHHHHHhcCCCEEEEeCC
Confidence 44444 45688999999998876432 1111212 134567888899999998754
No 281
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=30.66 E-value=75 Score=20.24 Aligned_cols=54 Identities=20% Similarity=0.107 Sum_probs=33.8
Q ss_pred CHHHHH--HHHHHhcCC-CEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDVI--CQAVEQMHI-DLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~I--~~~a~~~~~-dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++| .+.|++.++ |-+++.........+--+=..-+.|...++.|+++..-+
T Consensus 87 ~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P 143 (311)
T 3h5d_A 87 DTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPIIIYNIP 143 (311)
T ss_dssp SHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 444444 467888776 988777654332222111244578888899999998643
No 282
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=30.53 E-value=61 Score=20.94 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=18.2
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+|.||+=+.. ....+.+.+++.+||+=
T Consensus 102 ~D~iviR~~~---------~~~~~~lA~~~~vPVIN 128 (315)
T 1pvv_A 102 VDAIMARVYD---------HKDVEDLAKYATVPVIN 128 (315)
T ss_dssp CSEEEEECSS---------HHHHHHHHHHCSSCEEE
T ss_pred CcEEEEecCc---------hHHHHHHHHhCCCCEEc
Confidence 7888874331 34567778888888753
No 283
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=30.52 E-value=41 Score=17.55 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHHHHh-cCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEEC-CC
Q 038513 17 DVICQAVEQ-MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVK-PP 67 (81)
Q Consensus 17 ~~I~~~a~~-~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~-~~ 67 (81)
+...+..++ ..+|++++...-.. ...+ ...+.+-.. ..+|++++- ..
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~~ 98 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILTTGR 98 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEESCC
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEECCC
Confidence 334455566 78999999866322 1110 223344333 358999886 44
No 284
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=30.48 E-value=63 Score=16.86 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHH-hcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 13 GDARDVICQAVE-QMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~-~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
.+..+++..... ...+|+|++...-.. ...+ ...+.+-... .+|++++-..
T Consensus 34 ~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 34 SSSTEGLRIFTENCNSIDVVITDMKMPK-LSGM---DILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp SSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEEECT
T ss_pred CCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEECC
Confidence 344444444433 568999999876332 1111 2234444433 4888888644
No 285
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=30.42 E-value=92 Score=18.75 Aligned_cols=44 Identities=11% Similarity=-0.041 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++.....++|-|++........ ...-+-+....+||+.+....
T Consensus 53 ~i~~l~~~~vdgiii~~~~~~~~------~~~~~~~~~~giPvV~~~~~~ 96 (297)
T 3rot_A 53 FIESALATYPSGIATTIPSDTAF------SKSLQRANKLNIPVIAVDTRP 96 (297)
T ss_dssp HHHHHHHTCCSEEEECCCCSSTT------HHHHHHHHHHTCCEEEESCCC
T ss_pred HHHHHHHcCCCEEEEeCCCHHHH------HHHHHHHHHCCCCEEEEcCCC
Confidence 34444455777777754432211 112244566789999996543
No 286
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=30.37 E-value=47 Score=17.83 Aligned_cols=47 Identities=6% Similarity=0.048 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+.+.++++++++|.+++.....+.. ..-.. -..+....+.+.++|.
T Consensus 54 ~~~l~~~~~~~~id~viia~~~~~~~---~~~~i-~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 54 PKYLERLIKKHCISTVLLAVPSASQV---QKKVI-IESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGGHHHHHHHHTCCEEEECCTTSCHH---HHHHH-HHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCHH---HHHHH-HHHHHHcCCeEEECCC
Confidence 35677888888899888875432210 01111 2345567788888885
No 287
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=30.36 E-value=63 Score=20.78 Aligned_cols=27 Identities=15% Similarity=0.180 Sum_probs=17.9
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+|.||+=+.. ....+.+.+.+.+||+=
T Consensus 101 ~D~iviR~~~---------~~~~~~la~~~~vPVIN 127 (301)
T 2ef0_A 101 VEGIAARVFR---------HETVEALARHAKVPVVN 127 (301)
T ss_dssp CSEEEEECSS---------HHHHHHHHHHCSSCEEE
T ss_pred CCEEEEecCC---------hHHHHHHHHHCCCCEEe
Confidence 7888874431 34466777888888753
No 288
>3q3v_A Phosphoglycerate kinase; structural genomics, center for structural genomics of infec diseases, csgid, PGK; HET: PGE; 2.15A {Campylobacter jejuni subsp} SCOP: c.86.1.0
Probab=30.33 E-value=57 Score=22.08 Aligned_cols=47 Identities=15% Similarity=0.057 Sum_probs=36.0
Q ss_pred HHHHhcCCCEEEEcccCCCCC--CceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKV--KRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~--~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++-+.++-+|+|.+.|+..- ..+.+-.+++++-+....||-.++.-
T Consensus 50 ~~ll~~GakVil~SHlGRP~g~~~~~SL~pva~~L~~lLg~~V~f~~d~ 98 (403)
T 3q3v_A 50 RYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDV 98 (403)
T ss_dssp HHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHHHTSCCEECSSS
T ss_pred HHHHHCCCEEEEEecCCCCCCCCcccCHHHHHHHHHHHHCCCeEecCCC
Confidence 445556899999999888743 35567888889988889999888753
No 289
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=30.31 E-value=87 Score=18.44 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=16.1
Q ss_pred cceEEEEEecCCHHH----HHHHHHHhcCCCEEEEc
Q 038513 3 QVNAQTLILDGDARD----VICQAVEQMHIDLLVVG 34 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~----~I~~~a~~~~~dliVmG 34 (81)
|.++......+|-.+ +|.+.+++.++|+|+..
T Consensus 50 G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 50 GGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 444444434444333 34344443479998774
No 290
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=30.30 E-value=75 Score=17.72 Aligned_cols=49 Identities=10% Similarity=0.022 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..+ .++..+++.+|+|++...-.. . -| ...+.+-.. ..+|++++-..
T Consensus 38 ~~~~~-al~~~~~~~~dlvl~D~~lp~-~----~g~~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 38 HNKDE-ALKLAGAEKFEFITVXLHLGN-D----SGLSLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp CSHHH-HHHHHTTSCCSEEEECSEETT-E----ESHHHHHHHHHHCTTCEEEEEESS
T ss_pred CCHHH-HHHHHhhCCCCEEEEeccCCC-c----cHHHHHHHHHhcCCCCCEEEEeCC
Confidence 34444 445567778999999765221 1 12 223444433 35899888654
No 291
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=30.12 E-value=74 Score=20.17 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=34.4
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCC--CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGK--VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~--~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-...... ..+--+=..-+.|...++.|+++..-+
T Consensus 94 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P 151 (307)
T 3s5o_A 94 STQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVP 151 (307)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 44444 4578889999999987654321 111111234567888899999998643
No 292
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=30.05 E-value=1.1e+02 Score=19.67 Aligned_cols=39 Identities=10% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcC--CCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEE
Q 038513 16 RDVICQAVEQMH--IDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILI 63 (81)
Q Consensus 16 ~~~I~~~a~~~~--~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlv 63 (81)
.|.|.+.++-.. +|.||+=+.. ....+.+.+.+ .+||+=
T Consensus 85 gEsl~DTarvls~~~D~iviR~~~---------~~~~~~la~~~~~vPVIN 126 (310)
T 3csu_A 85 GETLADTISVISTYVDAIVMRHPQ---------EGAARLATEFSGNVPVLN 126 (310)
T ss_dssp HHHHHHHHHHHTTTCSEEEEEESS---------TTHHHHHHHHCTTCCEEE
T ss_pred CCcHHHHHHHHHHhCCEEEEECCC---------hhHHHHHHHhcCCCCEEc
Confidence 355555555322 8999885442 34577888899 899753
No 293
>1iej_A Ovotransferrin; iron, metal binding protein; 1.65A {Gallus gallus} SCOP: c.94.1.2 PDB: 1tfa_A 1nft_A 1nnt_A 1ovb_A 1gv8_A 1gvc_A*
Probab=30.04 E-value=72 Score=20.72 Aligned_cols=33 Identities=9% Similarity=0.018 Sum_probs=25.9
Q ss_pred cceEEEEEecCCHHHHHHHHHHhcCCCEEEEcc
Q 038513 3 QVNAQTLILDGDARDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~ 35 (81)
++...+++..+.-..+.++..+..++|++.++.
T Consensus 29 ~~~~~veCv~~~s~~~Ci~aI~~g~aD~~~ld~ 61 (332)
T 1iej_A 29 QERISLTCVQKATYLDCIKAIANNEADAITLDG 61 (332)
T ss_dssp TSSEEEEEEECSSHHHHHHHHHTTSCCBEEECH
T ss_pred hcCCceEEEEcCCHHHHHHHHHcCCCcEEEeCc
Confidence 445667777777677888888889999999974
No 294
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=29.99 E-value=57 Score=16.28 Aligned_cols=50 Identities=6% Similarity=0.035 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..+.+. ...+..+|++++...-.. ... -...+.+-....+|++++-..
T Consensus 32 ~~~~~~~~-~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~ii~~s~~ 81 (121)
T 1zh2_A 32 ETLQRGLL-EAATRKPDLIILDLGLPD-GDG---IEFIRDLRQWSAVPVIVLSAR 81 (121)
T ss_dssp SSHHHHHH-HHHHHCCSEEEEESEETT-EEH---HHHHHHHHTTCCCCEEEEESC
T ss_pred CCHHHHHH-HHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHhCCCCcEEEEECC
Confidence 34445544 444568999999765322 111 023444444456899888543
No 295
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=29.98 E-value=1.1e+02 Score=19.54 Aligned_cols=41 Identities=10% Similarity=-0.048 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHH-HhhhCCccEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDY-CAHHAVCPIL 62 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~-vi~~~~~Pvl 62 (81)
|+...--.+....+.+|.||+=+...+. .+. +.+.+.+||+
T Consensus 76 gEsl~DTarvls~~~~D~iviR~~~~~~---------~~~~la~~~~vPVI 117 (291)
T 3d6n_B 76 GESFFDTLKTFEGLGFDYVVFRVPFVFF---------PYKEIVKSLNLRLV 117 (291)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEESSCCC---------SCHHHHHTCSSEEE
T ss_pred CCcHHHHHHHHHHhcCCEEEEEcCChHH---------HHHHHHHhCCCCEE
Confidence 4333344444455557888886554332 334 6677888865
No 296
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ...
Probab=29.86 E-value=84 Score=20.80 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=23.5
Q ss_pred HHHHHhcCCCEEEEcccCCC--CCCceecCcHHHHHhhhCCccEE
Q 038513 20 CQAVEQMHIDLLVVGSRGLG--KVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~--~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
.+....+ +|.||+=+.... .... .-....+.+.+++.+||+
T Consensus 119 arvLs~y-~D~IviR~~~~~~~~~~~-~~~~~~~~lA~~~~vPVI 161 (359)
T 1zq6_A 119 ARVLGRY-VDLIGVRAFPKFVDWSKD-REDQVLKSFAKYSPVPVI 161 (359)
T ss_dssp HHHHHHH-CSEEEEECCCCSSCHHHH-TTCHHHHHHHHHCSSCEE
T ss_pred HHHHHHh-CcEEEEeccccccccccc-cchHHHHHHHHhCCCCEE
Confidence 3333444 999998544111 0000 013567888999999965
No 297
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=29.82 E-value=65 Score=21.17 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=29.2
Q ss_pred HhcCCCEEEEcccCCCCCC-ceecCcHHHHHh-hhCCccEEEECCC
Q 038513 24 EQMHIDLLVVGSRGLGKVK-RAFLGSVSDYCA-HHAVCPILIVKPP 67 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~-~~~~gs~~~~vi-~~~~~Pvlvv~~~ 67 (81)
++.++|.+++|+..-.... ---.|+-.-.++ ++..+|++|+-+.
T Consensus 222 ~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV~a~~ 267 (351)
T 1t5o_A 222 QKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAPK 267 (351)
T ss_dssp HTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred hcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEEeCcc
Confidence 4456999999998743222 222677765554 5556999998544
No 298
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=29.80 E-value=81 Score=17.94 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCCCEEEEc
Q 038513 17 DVICQAVEQMHIDLLVVG 34 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG 34 (81)
++|.+.+++.++|+|+..
T Consensus 52 ~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 52 KVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHhcCCCCEEEEc
Confidence 334344333379988764
No 299
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=29.58 E-value=62 Score=21.07 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=21.4
Q ss_pred HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 22 AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
....+ +|.||+=+.. ....+.+.+++.+||+
T Consensus 96 vls~~-~D~iviR~~~---------~~~~~~lA~~~~vPVI 126 (328)
T 3grf_A 96 VFSRM-VDICTARLAT---------KEMMREMAQHASVPCI 126 (328)
T ss_dssp HHTTT-CSEEEEECSS---------HHHHHHHHHHCSSCEE
T ss_pred HHHhh-CCEEEEecCC---------hhHHHHHHHhCCCCEE
Confidence 33444 8999985442 2556788899999965
No 300
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Probab=29.30 E-value=75 Score=21.59 Aligned_cols=46 Identities=11% Similarity=0.060 Sum_probs=35.8
Q ss_pred HHHHhcCCC-EEEEcccCCCC---CCceecCcHHHHHhhhCCccEEEECC
Q 038513 21 QAVEQMHID-LLVVGSRGLGK---VKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 21 ~~a~~~~~d-liVmG~~~~~~---~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++-+.++- +|+|.+.|+.. -..+.+..+++++-+....||-.+++
T Consensus 47 k~ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~~L~~lLg~~V~f~~d 96 (415)
T 1qpg_A 47 KYVLEHHPRYVVLASHLGQPNGERNEKYSLAPVAKELQSLLGKDVTFLND 96 (415)
T ss_dssp HHHHTTCCSEEEEECCCSCCCSSCCGGGCSHHHHHHHHHHHTSCCEEESC
T ss_pred HHHHHCCCCEEEEEecCCCCCCCCCCccCHHHHHHHHHHHHCCCceeCCC
Confidence 344556888 99998888873 34556788899999999999998875
No 301
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=29.25 E-value=84 Score=17.96 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=18.1
Q ss_pred cceEEEEEecCCHHHHHHHH----HHhcCCCEEEEcc
Q 038513 3 QVNAQTLILDGDARDVICQA----VEQMHIDLLVVGS 35 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~I~~~----a~~~~~dliVmG~ 35 (81)
|.++......+|-.+.|.+. ....++|+|+...
T Consensus 53 G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 53 GHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 44555555555544444433 3345789988743
No 302
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=29.18 E-value=70 Score=20.71 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=27.5
Q ss_pred CCCEEEEcccCCCCCCce--ecCcHH-HHHhhhCCccEEEECCC
Q 038513 27 HIDLLVVGSRGLGKVKRA--FLGSVS-DYCAHHAVCPILIVKPP 67 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~--~~gs~~-~~vi~~~~~Pvlvv~~~ 67 (81)
++|.+++|+.+-...... -.|+-. .-+.+...+|++|+-+.
T Consensus 189 ~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 189 KADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp GCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred hCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEecc
Confidence 699999999874332222 257654 34556677999999544
No 303
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=29.17 E-value=91 Score=19.93 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=34.8
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCC--CCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLG--KVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~--~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..++ +.+.|++.++|-+++-..... +..+--+=..-+.|...++.|+++..-+.
T Consensus 91 ~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~ 149 (318)
T 3qfe_A 91 STRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPG 149 (318)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCc
Confidence 44444 446888899999888765321 12111112345688889999999997654
No 304
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=28.99 E-value=59 Score=20.86 Aligned_cols=47 Identities=21% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCc---eecC------cHHHHHhhhCCccEEEE
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKR---AFLG------SVSDYCAHHAVCPILIV 64 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~---~~~g------s~~~~vi~~~~~Pvlvv 64 (81)
+..+.+.+.++|.|+++.++...... .-.| ....++.+...+||+.-
T Consensus 161 e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~ 216 (336)
T 1ypf_A 161 EAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAASKPIIAD 216 (336)
T ss_dssp HHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHHHHHHcCCcEEEe
Confidence 45667777899999998776321110 0001 12345555668998875
No 305
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=28.96 E-value=86 Score=17.95 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
.+.+.+.+++.++|+++.|.....
T Consensus 106 ~~~l~~~~~~~~~d~vi~GHtH~~ 129 (192)
T 1z2w_A 106 MASLALLQRQFDVDILISGHTHKF 129 (192)
T ss_dssp HHHHHHHHHHHSSSEEECCSSCCC
T ss_pred HHHHHHHHHhcCCCEEEECCcCcC
Confidence 456777777789999999987654
No 306
>3oz7_A Phosphoglycerate kinase; transferase, ATP binding, glycolysi malaria parasite; 2.70A {Plasmodium falciparum} SCOP: c.86.1.1 PDB: 1ltk_A* 3oza_A
Probab=28.94 E-value=72 Score=21.68 Aligned_cols=50 Identities=10% Similarity=0.094 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCC-EEEEcccCCCCC---CceecCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHID-LLVVGSRGLGKV---KRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~d-liVmG~~~~~~~---~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+|.. +-+.++- +|+|.+.|+..- ..+.+-.+++++-+....||-.+++-
T Consensus 47 pTI~~-ll~~gak~Vil~SHlGRP~g~~~~~~SL~pva~~L~~lLg~~V~f~~d~ 100 (417)
T 3oz7_A 47 PTINH-LKKEGASKIILISHCGRPDGLRNEKYTLKPVAETLKGLLGEEVLFLNDC 100 (417)
T ss_dssp HHHHH-HHHHTCSEEEEECCCSCCTTSCCGGGCSHHHHHHHHHHHTSCCEEESCS
T ss_pred HHHHH-HHHCCCCEEEEEecCCCCCCCCCCccCHHHHHHHHHHHhCCCcEECCCC
Confidence 34444 4445888 999998887643 34567888999988889999998753
No 307
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=28.66 E-value=97 Score=18.47 Aligned_cols=43 Identities=14% Similarity=-0.043 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCEEEEccc--CCCC-CCceecCcHHHHHhhhCCccEE
Q 038513 17 DVICQAVEQMHIDLLVVGSR--GLGK-VKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~--~~~~-~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
..|.+..++.++||||--.. +..+ ... |....+..-.-.+|++
T Consensus 88 pqI~d~I~~geIdlVInt~dPl~~~~h~~D---~~~IRR~A~~~~IP~~ 133 (178)
T 1vmd_A 88 QQIGAMIAEGKIDVLIFFWDPLEPQAHDVD---VKALIRIATVYNIPVA 133 (178)
T ss_dssp HHHHHHHHTTSCCEEEEECCSSSCCTTSCC---HHHHHHHHHHTTCCEE
T ss_pred chHHHHHHCCCccEEEEccCccCCCccccc---HHHHHHHHHHcCCCEE
Confidence 47999999999999998766 3222 111 3445566666667765
No 308
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.50 E-value=97 Score=18.43 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=25.0
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++...+.++|-|++......... ..-+-+....+|++++-...
T Consensus 56 ~~~~l~~~~vdgiI~~~~~~~~~~------~~~~~~~~~~iPvV~~~~~~ 99 (293)
T 3l6u_A 56 QILEFVHLKVDAIFITTLDDVYIG------SAIEEAKKAGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHTTCSEEEEECSCTTTTH------HHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHcCCCEEEEecCChHHHH------HHHHHHHHcCCCEEEecCCC
Confidence 444455567887777543222111 12244566799999996543
No 309
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=28.34 E-value=1.1e+02 Score=21.10 Aligned_cols=49 Identities=6% Similarity=0.041 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..+..+.+++.++|.|++-...+.+...-.--.....+.+.+++||+.-
T Consensus 454 ~~e~a~~~~~~Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIas 502 (555)
T 1jvn_A 454 VWELTRACEALGAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIAS 502 (555)
T ss_dssp HHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEE
Confidence 4567788888899999885544433322111234577788889998764
No 310
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=28.32 E-value=88 Score=17.86 Aligned_cols=8 Identities=0% Similarity=0.247 Sum_probs=6.1
Q ss_pred CCCEEEEc
Q 038513 27 HIDLLVVG 34 (81)
Q Consensus 27 ~~dliVmG 34 (81)
++|+|+..
T Consensus 69 ~~DlVitt 76 (167)
T 2g2c_A 69 GARFIITA 76 (167)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEC
Confidence 59998764
No 311
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=28.26 E-value=67 Score=16.50 Aligned_cols=52 Identities=6% Similarity=0.039 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
..+..+++........+|+|++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 36 ~~~~~~a~~~~~~~~~~dlvi~D~~~p~-~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 36 AEHGVEAWEKLDANADTKVLITDWNMPE-MNG---LDLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp ESSHHHHHHHHHHCTTCCEEEECSCCSS-SCH---HHHHHHHHTSTTCTTCCEEEEESC
T ss_pred eCCHHHHHHHHHhCCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCCCeEEEEeCC
Confidence 3455566555555557999999765321 111 0223344332 35899998654
No 312
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=28.08 E-value=17 Score=25.20 Aligned_cols=30 Identities=13% Similarity=0.423 Sum_probs=24.5
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcc
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~ 35 (81)
....+..|++.+.|.+++++.+++-|+.-.
T Consensus 82 ~~L~v~~G~~~~vl~~L~~~~~~~~V~~n~ 111 (537)
T 3fy4_A 82 SRLLVFKGEPGEVLVRCLQEWKVKRLCFEY 111 (537)
T ss_dssp CCCEEEESCHHHHHHHHHTTSCEEEEEECC
T ss_pred CceEEEECCHHHHHHHHHHHcCCCEEEEec
Confidence 344567799999999999999999988854
No 313
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=28.07 E-value=46 Score=24.22 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
-.+.|+++|++.++|++++|...
T Consensus 434 st~~Iv~~A~~~gid~~vlg~e~ 456 (757)
T 3ln7_A 434 STQALLFDVIQKGIHTEILDEND 456 (757)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTT
T ss_pred CHHHHHHHHHHhCCCEEEECCCH
Confidence 47889999999999999999753
No 314
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=27.90 E-value=80 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=18.6
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+|.||+=+. -....+.+.+++.+||+=
T Consensus 101 ~D~IviR~~---------~~~~~~~lA~~s~vPVIN 127 (335)
T 1dxh_A 101 YDAIEYRGF---------KQEIVEELAKFAGVPVFN 127 (335)
T ss_dssp CSEEEEECS---------CHHHHHHHHHHSSSCEEE
T ss_pred CCEEEEecC---------ChhHHHHHHHhCCCCEEc
Confidence 788888433 134567788888888863
No 315
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=27.77 E-value=69 Score=21.15 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=18.3
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+|.||+=+.. ....+.+.+++++||+
T Consensus 97 ~D~IviR~~~---------~~~~~~lA~~~~vPVI 122 (355)
T 4a8p_A 97 VDILMARVER---------HHSIVDLANCATIPVI 122 (355)
T ss_dssp CSEEEEECSS---------HHHHHHHHHHCSSCEE
T ss_pred CCEEEEecCc---------HHHHHHHHHhCCCCEE
Confidence 8888885432 3456778888899964
No 316
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=27.73 E-value=38 Score=22.43 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcc
Q 038513 15 ARDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~ 35 (81)
-.+.|.++++++++|+++.|.
T Consensus 55 d~~~l~~~a~~~~id~vv~g~ 75 (431)
T 3mjf_A 55 DIAGLLAFAQSHDIGLTIVGP 75 (431)
T ss_dssp CHHHHHHHHHHTTEEEEEECS
T ss_pred CHHHHHHHHHHhCcCEEEECC
Confidence 358899999999999999874
No 317
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1 PDB: 3b2b_A* 3uwd_A*
Probab=27.59 E-value=63 Score=21.79 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=35.7
Q ss_pred HHHHhcCCCEEEEcccCCCC---CCceecCcHHHHHhhhCCccEEEECC
Q 038513 21 QAVEQMHIDLLVVGSRGLGK---VKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~---~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++-+.++-+|+|.+.|+.. -..+.+..+++++-+...+||-.+++
T Consensus 45 ~~ll~~gakvil~SHlGRPkg~~~~~~SL~pva~~L~~lLg~~V~f~~d 93 (394)
T 1php_A 45 RYLIEHGAKVILASHLGRPKGKVVEELRLDAVAKRLGELLERPVAKTNE 93 (394)
T ss_dssp HHHHHTTCEEEEECCCSCCCSSCCGGGCSHHHHHHHHHHHTSCCEECSC
T ss_pred HHHHHCCCEEEEEecCCCCCCCCCCccCHHHHHHHHHHHHCCCceECCC
Confidence 34455689999999888873 24456788899999999999988865
No 318
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=27.46 E-value=52 Score=18.90 Aligned_cols=21 Identities=0% Similarity=0.020 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCCEEEEcccC
Q 038513 17 DVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~ 37 (81)
+.+.++.++.++|+|.+--..
T Consensus 25 ~~~~~~i~~~~~DIv~LQE~~ 45 (238)
T 1vyb_A 25 HRLASWIKSQDPSVCCIQETH 45 (238)
T ss_dssp HHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHcCCCEEEEeccc
Confidence 679999999999999996553
No 319
>2qh9_A UPF0215 protein AF_1433; structural genomics, PSI-2, MCSG, PR structure initiative; 1.80A {Archaeoglobus fulgidus}
Probab=27.31 E-value=64 Score=19.12 Aligned_cols=56 Identities=20% Similarity=0.352 Sum_probs=37.9
Q ss_pred EEEEEecC-CHHHHHHHHHHh--cC--CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 6 AQTLILDG-DARDVICQAVEQ--MH--IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 6 ~~~~~~~g-~~~~~I~~~a~~--~~--~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
+......| +..+.|++..+. +. .|++++-..+-.++.. ++ . ..+-..+..|++.|-
T Consensus 38 ~~~~~vdG~dat~~i~~~~~~l~~~p~~~vvllDG~g~agfn~--~d-i-~~l~~~~~~P~I~V~ 98 (184)
T 2qh9_A 38 YTEIDIDGLDATDKLISMVRRSKFREQIKCIFLPGITLGGFNL--VD-I-QRVYRETKIPVVVVM 98 (184)
T ss_dssp EEEECTTCSCHHHHHHHHHTTCTTTTTEEEEEESSSEETTTEE--CC-H-HHHHHHHCCCEEEEE
T ss_pred EEEEEECChhHHHHHHHHHHhcCCCCCCcEEEECCEeeccCCE--eC-H-HHHHHhhCCCEEEEE
Confidence 33334556 678888888743 22 5999998887764432 22 2 458888999999994
No 320
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=27.24 E-value=91 Score=21.12 Aligned_cols=51 Identities=8% Similarity=-0.090 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCC----CCc---eecCcHHHHHhhhCCcc---EEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGK----VKR---AFLGSVSDYCAHHAVCP---ILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~----~~~---~~~gs~~~~vi~~~~~P---vlvv 64 (81)
...+++++.|++.+.-+|+-.+.+.-. ... ..+......+..++.+| |.+-
T Consensus 25 e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLH 85 (420)
T 2fiq_A 25 LVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILG 85 (420)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEE
Confidence 578899999999999999988876532 211 22346778888888999 5544
No 321
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=27.17 E-value=68 Score=20.68 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=21.8
Q ss_pred HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 22 AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
....+ +|.||+=+.. ....+.+.+++++||+=-
T Consensus 96 vls~~-~D~iviR~~~---------~~~~~~lA~~~~vPVINa 128 (309)
T 4f2g_A 96 VISRM-VDIIMIRTFE---------QDIIQRFAENSRVPVING 128 (309)
T ss_dssp HHHHH-CSEEEEECSC---------HHHHHHHHHTCSSCEEEE
T ss_pred HHHHh-CCEEEEecCC---------HHHHHHHHHhCCCCEEEC
Confidence 33344 8998885442 245678888999997643
No 322
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=27.12 E-value=86 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=18.1
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+|.||+=.. -....+.+.+.+.+||+=
T Consensus 123 ~D~IviR~~---------~~~~~~~lA~~s~vPVIN 149 (359)
T 2w37_A 123 FDGIEFRGF---------KQSDAEILARDSGVPVWN 149 (359)
T ss_dssp CSEEEEESS---------CHHHHHHHHHHSSSCEEE
T ss_pred cCEEEEecC---------ChHHHHHHHHhCCCCEEc
Confidence 788887433 134567778888888753
No 323
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Probab=26.98 E-value=1e+02 Score=20.10 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=21.2
Q ss_pred CCEEEEcccCCC-CCCceecCcHHHHHhhhCCccEEE
Q 038513 28 IDLLVVGSRGLG-KVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 28 ~dliVmG~~~~~-~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+|.||+=....- .+..-.-....+.+.+.+++||+=
T Consensus 104 ~D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVIN 140 (324)
T 1js1_X 104 CDIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFS 140 (324)
T ss_dssp CSEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEE
T ss_pred CcEEEEecccccccccccccchHHHHHHhhCCCCEEE
Confidence 899998543110 000001245678888999999853
No 324
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=26.93 E-value=16 Score=24.14 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC------Cce-----ecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV------KRA-----FLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~------~~~-----~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+...++++.|++.+..+|+--+.+.... ..+ .+......+.+++++||.+-=+..
T Consensus 32 e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaLHlDHg 97 (349)
T 3elf_A 32 ETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVALHTDHC 97 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 5778999999999999999876543211 111 122344667788999998765443
No 325
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=26.86 E-value=39 Score=20.27 Aligned_cols=50 Identities=10% Similarity=0.001 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
...++.+.+.+.+++.|+.....+.+...-.--....++.+.+++||+..
T Consensus 145 ~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~iPvia~ 194 (241)
T 1qo2_A 145 DPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSLTKKIAIEAEVKVLAA 194 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEEEETTHHHHTCCCCHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHhCCCCEEEEEeecccccCCcCCHHHHHHHHHhcCCcEEEE
Confidence 44566677777899988875543322111011144567777788998875
No 326
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=26.72 E-value=59 Score=16.97 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~ 66 (81)
+...+......+|++++...-.+ ...+ .....+-.. ..+|++++-.
T Consensus 34 ~~a~~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~~s~ 80 (139)
T 2jk1_A 34 EAAIAILEEEWVQVIICDQRMPG-RTGV---DFLTEVRERWPETVRIIITG 80 (139)
T ss_dssp HHHHHHHHHSCEEEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEEES
T ss_pred HHHHHHHhcCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCcEEEEeC
Confidence 44445556678999999876322 1111 223444433 3478888754
No 327
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=26.68 E-value=1.1e+02 Score=18.66 Aligned_cols=49 Identities=10% Similarity=0.013 Sum_probs=27.9
Q ss_pred CCHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++..+ .++.....++|.|++........ ...-+-+....+||+.+...
T Consensus 44 ~d~~~q~~~i~~li~~~vdgiii~~~~~~~~------~~~~~~a~~~gipvV~~d~~ 94 (316)
T 1tjy_A 44 PSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL------CPALKRAMQRGVKILTWDSD 94 (316)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCSSSSTT------HHHHHHHHHTTCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH------HHHHHHHHHCcCEEEEecCC
Confidence 344433 34444456899988875432211 11223456678999998643
No 328
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=26.66 E-value=1.1e+02 Score=18.56 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=27.3
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHH
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSD 51 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~ 51 (81)
++-..+..++|.+.+..+.....+|+|.+.+-..+.-.+.|..+..+
T Consensus 116 k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ 162 (227)
T 1tqx_A 116 WCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMG 162 (227)
T ss_dssp EEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHH
T ss_pred eEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHH
Confidence 34444444567676766655335899877776555545555444444
No 329
>3ady_A DOTD; 3-layer(BAB) sandwich, MTH1598-like, proton transport; 2.00A {Legionella pneumophila}
Probab=26.59 E-value=84 Score=18.18 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=27.9
Q ss_pred EEecCCHHHHHHHHHHhcCCCEEEEcccCCCCC
Q 038513 9 LILDGDARDVICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 9 ~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
.-..|++.+.+.++|+..++.+.++|.+..-+.
T Consensus 70 ~dW~Gp~eelL~~LA~~~Gy~f~v~G~rpalPv 102 (148)
T 3ady_A 70 VDWSGPIEELTARIAKAAHFRFRVLGKSPSVPV 102 (148)
T ss_dssp EEEEEEHHHHHHHHHHHTTCEEEEESCCCSSCC
T ss_pred EEeeCCHHHHHHHHHHHcCceEEeccCCCCCCc
Confidence 345799999999999999999999998865544
No 330
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=26.56 E-value=57 Score=20.55 Aligned_cols=53 Identities=6% Similarity=0.030 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCcee-cCcHHHHHhh---hCCccEEEECCCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAF-LGSVSDYCAH---HAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~-~gs~~~~vi~---~~~~Pvlvv~~~~ 68 (81)
.+.+++.+.+.++|+|+++.-=-....... .-....+.+. ...+|+++++..-
T Consensus 29 ~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v~GNH 85 (333)
T 1ii7_A 29 FKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNH 85 (333)
T ss_dssp HHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCTT
T ss_pred HHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEeCCcC
Confidence 467788888999999998754221110000 0011112333 3469999997543
No 331
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=26.53 E-value=58 Score=21.20 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
|+...--.+....+ +|.||+=+.. ....+.+.+.+.+||+
T Consensus 90 gEsl~DTarvLs~~-~D~iviR~~~---------~~~~~~lA~~~~vPVI 129 (323)
T 3gd5_A 90 GEPVRDTARVLGRY-VDGLAIRTFA---------QTELEEYAHYAGIPVI 129 (323)
T ss_dssp -CCHHHHHHHHTTT-CSEEEEECSS---------HHHHHHHHHHHCSCEE
T ss_pred CCCHHHHHHHHHHh-CCEEEEecCC---------hhHHHHHHHhCCCCEE
Confidence 43333333333444 8999885442 2456778888999975
No 332
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=26.40 E-value=1e+02 Score=18.01 Aligned_cols=44 Identities=5% Similarity=0.032 Sum_probs=26.5
Q ss_pred HHHhcCCCEEEEcccCCCCCCcee--cCc---HHHHHhhhCCccEEEEC
Q 038513 22 AVEQMHIDLLVVGSRGLGKVKRAF--LGS---VSDYCAHHAVCPILIVK 65 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~~~~~~~~--~gs---~~~~vi~~~~~Pvlvv~ 65 (81)
.+.+.++|+|.++..+........ .+. ...++....++|++..-
T Consensus 134 ~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~G 182 (223)
T 1y0e_A 134 NAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEG 182 (223)
T ss_dssp HHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEec
Confidence 366778999987766543222111 122 35566777788988764
No 333
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=26.38 E-value=72 Score=16.27 Aligned_cols=21 Identities=0% Similarity=-0.151 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCCEEEEcccC
Q 038513 17 DVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~ 37 (81)
++..+..++..+|+|++...-
T Consensus 40 ~~a~~~l~~~~~dlii~d~~l 60 (132)
T 3lte_A 40 FDAGIKLSTFEPAIMTLDLSM 60 (132)
T ss_dssp HHHHHHHHHTCCSEEEEESCB
T ss_pred HHHHHHHHhcCCCEEEEecCC
Confidence 344455667799999998763
No 334
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=26.31 E-value=69 Score=16.01 Aligned_cols=50 Identities=6% Similarity=0.078 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..+. .+..++..+|++++...-.. ... -...+.+-+. ..+|++++-..
T Consensus 34 ~~~~~a-~~~~~~~~~dlil~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 34 TNGREA-VEKYKELKPDIVTMDITMPE-MNG---IDAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp SSHHHH-HHHHHHHCCSEEEEECSCGG-GCH---HHHHHHHHHHCTTCCEEEEECT
T ss_pred CCHHHH-HHHHHhcCCCEEEEeCCCCC-CcH---HHHHHHHHhhCCCCeEEEEeCC
Confidence 344444 44455668999999865321 111 1234444443 34888888543
No 335
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=26.27 E-value=53 Score=19.13 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
..+.|.++.++.++|+|++--..
T Consensus 14 ~~~~i~~~i~~~~~DIv~LQE~~ 36 (256)
T 2jc4_A 14 RLPQVQNLLADNPPDILVLQELK 36 (256)
T ss_dssp HHHHHHHHHHSSCCSEEEEECCC
T ss_pred HHHHHHHHHHhcCCCEEEEEeec
Confidence 45678899999999999996544
No 336
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=26.26 E-value=1.1e+02 Score=18.10 Aligned_cols=33 Identities=9% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 22 AVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 22 ~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
..++.++|.|+++-... . ..+.+-...++||+=
T Consensus 70 ~l~~~g~d~iviaCnta-~--------~~~~l~~~~~iPvi~ 102 (228)
T 2eq5_A 70 EFEREGVDAIIISCAAD-P--------AVEKVRKLLSIPVIG 102 (228)
T ss_dssp HHHHTTCSEEEECSTTC-T--------THHHHHHHCSSCEEE
T ss_pred HHHHCCCCEEEEeCCch-H--------HHHHHHHhCCCCEeC
Confidence 34567999999998654 1 134555556788764
No 337
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=26.26 E-value=1e+02 Score=19.30 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCCE-EEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 17 DVICQAVEQMHIDL-LVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 17 ~~I~~~a~~~~~dl-iVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+...+.++ ++|| ||+|+...-.. .-+.. ........|+++|....
T Consensus 204 ~~a~~~~~--~aDl~lviGTSl~V~P----aa~l~-~~a~~~g~~~v~IN~~~ 249 (273)
T 3riy_A 204 EEVDRELA--HCDLCLVVGTSSVVYP----AAMFA-PQVAARGVPVAEFNTET 249 (273)
T ss_dssp HHHHHHHH--HCSEEEEESCCSCEET----GGGHH-HHHHHTTCCEEEEESSC
T ss_pred HHHHHHHh--cCCEEEEEeeCCcchh----HHHhH-HHHHHCCCEEEEECCCC
Confidence 33444444 5885 56777653311 11222 22355789999997654
No 338
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=26.25 E-value=79 Score=20.13 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=25.9
Q ss_pred HHHHHhcCCCEEEEcccCCCCC-CceecCcHHHHHhhhCCccEEEEC
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKV-KRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~-~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+.+.+.++|.|++-....++. .....-+...++....++||+..-
T Consensus 123 a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaG 169 (332)
T 2z6i_A 123 AKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAG 169 (332)
T ss_dssp HHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEEC
Confidence 4556677899999932211111 011101345666677789998864
No 339
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=26.23 E-value=55 Score=19.16 Aligned_cols=23 Identities=9% Similarity=0.153 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
..+.|.++.++.++|+|++--..
T Consensus 15 ~~~~i~~~i~~~~~Dii~lQE~~ 37 (257)
T 2voa_A 15 RLHIVIPWLKENKPDILCMQETK 37 (257)
T ss_dssp THHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEEEee
Confidence 45779999999999999996553
No 340
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=26.13 E-value=24 Score=24.36 Aligned_cols=59 Identities=7% Similarity=0.052 Sum_probs=37.6
Q ss_pred EEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 7 QTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 7 ~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
...+..|++.+.|.+++++.+++-|+.-..-. +. ..-...-..+.+....+++..+...
T Consensus 104 ~L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~~-p~-~~~rd~~v~~~~~~~gi~~~~~~~~ 162 (543)
T 2wq7_A 104 RLFVVRGKPAEVFPRIFKSWRVEMLTFETDIE-PY-SVTRDAAVQKLAKAEGVRVETHCSH 162 (543)
T ss_dssp CCEEEESCHHHHHHHHHHHTTEEEEEEECCCS-HH-HHHHHHHHHHHHHHHTCEEEEECCS
T ss_pred eEEEEeCCHHHHHHHHHHHcCCCEEEEecCcC-HH-HHHHHHHHHHHHHHcCCEEEEecCC
Confidence 34556799999999999999999888753321 11 1111233345556667887777643
No 341
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26
Probab=26.11 E-value=49 Score=19.18 Aligned_cols=15 Identities=13% Similarity=0.058 Sum_probs=11.2
Q ss_pred hhhCCccEEEECCCC
Q 038513 54 AHHAVCPILIVKPPK 68 (81)
Q Consensus 54 i~~~~~Pvlvv~~~~ 68 (81)
+.+.+||+|++....
T Consensus 192 l~~i~~P~l~i~G~~ 206 (258)
T 1m33_A 192 LQNVSMPFLRLYGYL 206 (258)
T ss_dssp GGGCCSCEEEEEETT
T ss_pred HhhCCCCEEEEeecC
Confidence 456789999997543
No 342
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=26.10 E-value=61 Score=19.12 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCc
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKR 43 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~ 43 (81)
-..+++++.+++.||.|-+.-+.+..
T Consensus 92 l~vd~~~~~~a~~ivrGlr~~~Dfey 117 (177)
T 3nbk_A 92 LVVDFVRSCGMTAIVKGLRTGTDFEY 117 (177)
T ss_dssp CHHHHHHHTTCCEEEEEECTTCCHHH
T ss_pred hHHHHHHHcCCCEEEECCCchhHHHH
Confidence 35688899999999999887766653
No 343
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=26.04 E-value=53 Score=24.03 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
-+.+.+++.|.++++|+|.+++.-
T Consensus 644 VPpEeIVeAA~EedADVVGLSsLL 667 (763)
T 3kp1_A 644 VPVEKLVDAAIELKADAILASTII 667 (763)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEEEEeccc
Confidence 588999999999999999997653
No 344
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=25.98 E-value=74 Score=20.69 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=16.7
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+|.||+=+.. ....+.+.+.+.+||+
T Consensus 114 ~D~iviR~~~---------~~~~~~lA~~~~vPVI 139 (325)
T 1vlv_A 114 VDAIMFRGYK---------QETVEKLAEYSGVPVY 139 (325)
T ss_dssp CSEEEEESSC---------HHHHHHHHHHHCSCEE
T ss_pred CCEEEEECCC---------hHHHHHHHHhCCCCEE
Confidence 7887774331 3445677777788864
No 345
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=25.92 E-value=1.1e+02 Score=18.18 Aligned_cols=35 Identities=3% Similarity=-0.096 Sum_probs=23.2
Q ss_pred HhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 24 EQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 24 ~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
...++|||+...... ......-++...+||++++.
T Consensus 56 ~~l~PDLIi~~~~~~--------~~~~~~~L~~~gipvv~~~~ 90 (256)
T 2r7a_A 56 LSLRPDSVITWQDAG--------PQIVLDQLRAQKVNVVTLPR 90 (256)
T ss_dssp HTTCCSEEEEETTCS--------CHHHHHHHHHTTCEEEEECC
T ss_pred HccCCCEEEEcCCCC--------CHHHHHHHHHcCCcEEEecC
Confidence 345899999864311 12344566788899999864
No 346
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=25.85 E-value=92 Score=20.49 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHH----HHhhhC--CccEEEE
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSD----YCAHHA--VCPILIV 64 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~----~vi~~~--~~Pvlvv 64 (81)
.+..+.+.+.++|.|++..++...+.. +..+. .+.+.. .+||+..
T Consensus 228 ~e~A~~a~~~GaD~I~vsn~GG~~~d~---~~~~~~~L~~i~~av~~~ipVia~ 278 (352)
T 3sgz_A 228 KEDAELAMKHNVQGIVVSNHGGRQLDE---VSASIDALREVVAAVKGKIEVYMD 278 (352)
T ss_dssp HHHHHHHHHTTCSEEEECCGGGTSSCS---SCCHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCccCC---CccHHHHHHHHHHHhCCCCeEEEE
Confidence 345677888899999998775433221 22222 233333 5888765
No 347
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=25.78 E-value=27 Score=24.22 Aligned_cols=30 Identities=13% Similarity=0.376 Sum_probs=24.1
Q ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEEcc
Q 038513 6 AQTLILDGDARDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 6 ~~~~~~~g~~~~~I~~~a~~~~~dliVmG~ 35 (81)
....+..|++.+.|.+++++.+++-|+.-.
T Consensus 78 ~~L~v~~G~~~~vl~~L~~~~~a~~V~~n~ 107 (538)
T 3tvs_A 78 GRLLVFEGEPAYIFRRLHEQVRLHRICIEQ 107 (538)
T ss_dssp SCCEEEESCHHHHHHHHHHHHCEEEECEEC
T ss_pred CeEEEEeCCHHHHHHHHHHHcCCCEEEEcc
Confidence 344567799999999999999999888643
No 348
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=25.74 E-value=1.2e+02 Score=18.68 Aligned_cols=51 Identities=8% Similarity=0.080 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+..+++ +..+++.+|||+|--.-......+ ..+..+-....+||+++-..
T Consensus 192 ~~g~eAl-~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 192 ATRGEAL-EAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp SSHHHHH-HHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTTCCEEEEESC
T ss_pred CCHHHHH-HHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCCCCEEEEeCC
Confidence 3444444 455567899999987633122221 22444444448999999754
No 349
>1v6s_A Phosphoglycerate kinase; riken structu genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=25.74 E-value=1.2e+02 Score=20.49 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=35.0
Q ss_pred HHHHhcCCCEEEEcccCCCC--CCceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGK--VKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~--~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++-+.++-+|+|.+.|+.. -..+.+-.+++++-+... ||-.++.-
T Consensus 43 ~~ll~~gakvil~SHlGRPkg~~~~~SL~pva~~L~~lLg-~V~f~~d~ 90 (390)
T 1v6s_A 43 RHLLAGGASLVLLSHLGRPKGPDPKYSLAPVGEALRAHLP-EARFAPFP 90 (390)
T ss_dssp HHHHHTTCEEEEECCCSCCSSCCGGGCSHHHHHHHHHHCT-TEEECCSC
T ss_pred HHHHHCCCEEEEECCCCCCCCCCCCcCHHHHHHHHHHHhC-Cceecccc
Confidence 34455689999999888763 345567888999999999 99888653
No 350
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=25.59 E-value=44 Score=20.28 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=23.6
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+.+..++.++|+||+.-...+.+ .+.+-...++|++=+
T Consensus 68 ~~~~L~~~g~~~iviaCNTa~~~--------~~~l~~~~~iPvi~i 105 (231)
T 3ojc_A 68 AAISLKHAGAEVIVVCTNTMHKV--------ADDIEAACGLPLLHI 105 (231)
T ss_dssp HHHHHHHHTCCEEEECSSGGGGG--------HHHHHHHHCSCBCCH
T ss_pred HHHHHHhcCCCEEEEeCCchHHH--------HHHHHHhCCCCEecc
Confidence 34455567999999987753321 244555556776643
No 351
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=25.57 E-value=46 Score=16.90 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecC-cHHHHHhhh---CCccEEEECC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLG-SVSDYCAHH---AVCPILIVKP 66 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~g-s~~~~vi~~---~~~Pvlvv~~ 66 (81)
...+..++..+|++++...-.+ .. | ...+.+-+. ..+|++++-.
T Consensus 37 ~a~~~~~~~~~dlvi~D~~l~~-~~----g~~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 37 SAVNQLNEPWPDLILLAWMLPG-GS----GIQFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp HHHTTCSSSCCSEEEEESEETT-EE----HHHHHHHHHTSTTTTTSCEEEEEE
T ss_pred HHHHHHhccCCCEEEEecCCCC-CC----HHHHHHHHHhCcccCCCCEEEEeC
Confidence 3334555667899998765321 11 2 223444333 4589988854
No 352
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=25.38 E-value=65 Score=20.73 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+|.||+=+.. ....+.+.+.+.+||+
T Consensus 95 ~D~iviR~~~---------~~~~~~lA~~~~vPVI 120 (307)
T 2i6u_A 95 VDAIVWRTFG---------QERLDAMASVATVPVI 120 (307)
T ss_dssp EEEEEEECSS---------HHHHHHHHHHCSSCEE
T ss_pred CCEEEEecCC---------hhHHHHHHhhCCCCEE
Confidence 7888885431 3456778888889985
No 353
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=25.32 E-value=55 Score=18.24 Aligned_cols=61 Identities=11% Similarity=0.172 Sum_probs=42.9
Q ss_pred CccceEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 1 MVQVNAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 1 ~~~v~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
++|+.+...+...+...-|.+..+.++|..+....+..+.-...++-... .+..-+.|++-
T Consensus 5 LdgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der~~~~eyDi~lTDnp----~~~~~~tLLL~ 65 (117)
T 2kx7_A 5 LDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNP----SNLTASGLLLS 65 (117)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSSSSCCCCSEEEEESG----GGCSSSEEEEC
T ss_pred ccCcEEEEEcCcHHHHHHHHHHHHhcCCeEEeccccCCCCcccEEEecCc----cccCcCeEEEe
Confidence 46777777777778888888999999999999988776666666654444 23444444443
No 354
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=25.32 E-value=67 Score=21.54 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCC------CCCcee-----cCcHHHHHhhhCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLG------KVKRAF-----LGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~------~~~~~~-----~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+.|...+++.++|+|++...-.. ++..+- ++..++.+..-+..|++++-.+
T Consensus 269 ~~v~p~~~~f~PdlivvsaG~Da~~~d~D~lg~~~lt~~~~~~~~~~l~~~a~~~~v~vleG 330 (413)
T 2vqm_A 269 TVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEG 330 (413)
T ss_dssp HTHHHHHHHHCCSEEEEEECCTTBSSCTTTTCCCCBCHHHHHHHHHHHHTSGGGCEEEEECC
T ss_pred HHHHHHHHhcCCCEEEEeCChhhcCCCCCCCCCcccCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 34556788999999999775322 233332 3455667777778899888544
No 355
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=25.28 E-value=54 Score=23.89 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
.+.+.+++.+.++++|+|++.+...
T Consensus 634 v~~eeiv~aA~e~~adiVglSsl~~ 658 (727)
T 1req_A 634 QTPEETARQAVEADVHVVGVSSLAG 658 (727)
T ss_dssp BCHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCHHHHHHHHHHcCCCEEEEeeecH
Confidence 4679999999999999999988643
No 356
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.24 E-value=95 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=18.4
Q ss_pred HHHHHhcCCCEEEEcccCCCC--CCceec
Q 038513 20 CQAVEQMHIDLLVVGSRGLGK--VKRAFL 46 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~--~~~~~~ 46 (81)
++.+...++|+|++-+.|+.. ....++
T Consensus 172 l~~a~~~~~DvvIIDTaGr~~~~~d~~lm 200 (433)
T 3kl4_A 172 VDIFVKNKMDIIIVDTAGRHGYGEETKLL 200 (433)
T ss_dssp HHHTTTTTCSEEEEEECCCSSSCCTTHHH
T ss_pred HHHHHhcCCCEEEEECCCCccccCCHHHH
Confidence 344555689999999998766 444343
No 357
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=25.23 E-value=1.1e+02 Score=17.76 Aligned_cols=17 Identities=6% Similarity=0.214 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCCEEEEc
Q 038513 18 VICQAVEQMHIDLLVVG 34 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG 34 (81)
+|.+.+++.++|+|+..
T Consensus 59 ~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 59 TLIELADEKGCSLILTT 75 (178)
T ss_dssp HHHHHHHTSCCSEEEEE
T ss_pred HHHHHHhcCCCCEEEEC
Confidence 34444433379988774
No 358
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=25.13 E-value=1.1e+02 Score=18.01 Aligned_cols=52 Identities=10% Similarity=0.094 Sum_probs=29.0
Q ss_pred HHHHHHHHHhc--CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 16 RDVICQAVEQM--HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 16 ~~~I~~~a~~~--~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+.+++.+++. ++|+|+...---......-+ ....++++..++|+++++..-
T Consensus 28 l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~~~~l~~l~~p~~~v~GNH 81 (274)
T 3d03_A 28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEY-QVARQILGSLNYPLYLIPGNH 81 (274)
T ss_dssp HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHH-HHHHHHHTTCSSCEEEECCTT
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHH-HHHHHHHHhcCCCEEEECCCC
Confidence 45566666654 67998886542111100000 123466777789999997543
No 359
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=24.89 E-value=1.5e+02 Score=21.70 Aligned_cols=38 Identities=16% Similarity=-0.010 Sum_probs=25.7
Q ss_pred CCCEEEEcccCC--CCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 27 HIDLLVVGSRGL--GKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 27 ~~dliVmG~~~~--~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
++|++|+-..+- ++.. .+....++++...+||++|-..
T Consensus 201 ~~D~vvVEGaGGl~~p~~---~~~~~adla~~l~~PVILV~d~ 240 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGP---SGTLQCDLYRPFRLPGILVGDG 240 (831)
T ss_dssp -CEEEEEECCSSTTCBCT---TSCBHHHHTGGGCCCEEEECCC
T ss_pred cCCEEEEECCCCccCCCC---CCccHHHHHHHcCCCEEEEECC
Confidence 789988865541 2222 2334578999999999999654
No 360
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=24.89 E-value=1e+02 Score=19.53 Aligned_cols=40 Identities=13% Similarity=0.020 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+.+..++.++|+|+..+. . +..+..+.+...+|++.+-
T Consensus 108 ~~l~~~l~~~~PDlVi~d~~--~-------~~~~~~aA~~~giP~v~~~ 147 (415)
T 3rsc_A 108 RATAEALDGDVPDLVLYDDF--P-------FIAGQLLAARWRRPAVRLS 147 (415)
T ss_dssp HHHHHHHSSSCCSEEEEEST--T-------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHhccCCCEEEECch--h-------hhHHHHHHHHhCCCEEEEE
Confidence 45677788889999996421 0 1123455677889998875
No 361
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=24.80 E-value=41 Score=17.50 Aligned_cols=41 Identities=7% Similarity=0.011 Sum_probs=23.0
Q ss_pred HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 23 VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
.++..+|+|++...-.. ... -...+.+-... .+|++++-..
T Consensus 55 l~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 55 PADTRPGIVILDLGGGD-LLG---KPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp CTTCCCSEEEEEEETTG-GGG---STTHHHHHGGGTTCCEEEEESC
T ss_pred HhccCCCEEEEeCCCCC-chH---HHHHHHHHhhCCCCcEEEEeCC
Confidence 35567888888765322 111 12344444444 5899888654
No 362
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=24.76 E-value=1e+02 Score=18.40 Aligned_cols=44 Identities=11% Similarity=-0.023 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++.....++|-||+........ ...-+-+....+||+++....
T Consensus 61 ~i~~l~~~~vdgiii~~~~~~~~------~~~~~~~~~~~iPvV~~~~~~ 104 (304)
T 3gbv_A 61 TSQAVIEEQPDGVMFAPTVPQYT------KGFTDALNELGIPYIYIDSQI 104 (304)
T ss_dssp HHHHHHTTCCSEEEECCSSGGGT------HHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHHHhcCCCEEEECCCChHHH------HHHHHHHHHCCCeEEEEeCCC
Confidence 45556667888888864422111 112234566789999997543
No 363
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=24.74 E-value=1e+02 Score=17.84 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
..+..+.+ +...+..+|++++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 33 ~~~~~~al-~~l~~~~~dlvllD~~lp~-~~g---~~~~~~lr~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 33 AGSVAEAM-ARVPAARPDVAVLDVRLPD-GNG---IELCRDLLSRMPDLRCLILTSY 84 (225)
T ss_dssp ESSHHHHH-HHHHHHCCSEEEECSEETT-EEH---HHHHHHHHHHCTTCEEEEGGGS
T ss_pred ECCHHHHH-HHHhhcCCCEEEEeCCCCC-CCH---HHHHHHHHHhCCCCcEEEEECC
Confidence 34444444 4455568999999765321 111 1234444443 35899988543
No 364
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=24.68 E-value=1e+02 Score=20.04 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=27.4
Q ss_pred HHHHhcCCCEEEEcccCCCCCC----ceecCcHHHHHhhhCCccEEEE
Q 038513 21 QAVEQMHIDLLVVGSRGLGKVK----RAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~~----~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
+..++.++|+|-+|..+..+-. .--+-...+.|....++|+.|-
T Consensus 88 ~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~vPlsID 135 (323)
T 4djd_D 88 KCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGVPLVVV 135 (323)
T ss_dssp HHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCceEEEE
Confidence 3334789999999854333221 0012235677778889998876
No 365
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=24.48 E-value=1.2e+02 Score=18.34 Aligned_cols=36 Identities=11% Similarity=-0.094 Sum_probs=23.5
Q ss_pred HHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 23 VEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 23 a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
....++|||+...... ......-++...+||++++.
T Consensus 55 i~~l~PDLIi~~~~~~--------~~~~~~~L~~~gipvv~~~~ 90 (283)
T 2r79_A 55 VLALRPDILIGTEEMG--------PPPVLKQLEGAGVRVETLSA 90 (283)
T ss_dssp HHTTCCSEEEECTTCC--------CHHHHHHHHHTTCCEEECCC
T ss_pred HHhcCCCEEEEeCccC--------cHHHHHHHHHcCCcEEEecC
Confidence 3445899999864310 12344567788899998864
No 366
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=24.48 E-value=90 Score=17.84 Aligned_cols=43 Identities=12% Similarity=0.071 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhC-CccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHA-VCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~-~~Pvlvv~~~ 67 (81)
+...+..++..+|+++|. +.+++ ...+.+-... .+|++++-..
T Consensus 34 ~~al~~l~~~~~dlvilp--~~~g~------~~~~~lr~~~~~~~ii~lt~~ 77 (223)
T 2hqr_A 34 EDGEYLMDIRNYDLVMVS--DKNAL------SFVSRIKEKHSSIVVLVSSDN 77 (223)
T ss_dssp HHHHHHHTTSCCSEEEEC--CTTHH------HHHHHHHHHCTTSEEEEEESS
T ss_pred HHHHHHHhcCCCCEEEeC--CCCHH------HHHHHHHhCCCCCcEEEEECC
Confidence 334455666789999921 11111 2334444444 6899988644
No 367
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=24.35 E-value=76 Score=15.82 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
+...+..++..+|++++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 34 ~~a~~~~~~~~~dlil~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDLGLPD-EDG---LSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSS-SCH---HHHHHHHHHTTCCSCEEEEESC
T ss_pred HHHHHHHhccCCCEEEEecCCCC-CCH---HHHHHHHHhcCCCCCEEEEecC
Confidence 34455566778999999765322 111 1234444433 35899888543
No 368
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=24.25 E-value=1.1e+02 Score=17.84 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=23.6
Q ss_pred EEEEecCCH------HHHHHHHHHhcCCCEEEEcccCCC
Q 038513 7 QTLILDGDA------RDVICQAVEQMHIDLLVVGSRGLG 39 (81)
Q Consensus 7 ~~~~~~g~~------~~~I~~~a~~~~~dliVmG~~~~~ 39 (81)
...+..|.+ .+.+.+.+++.++|+++.|.....
T Consensus 115 ~i~l~Hg~~~~~~~~~~~l~~~~~~~~~d~vl~GHtH~~ 153 (215)
T 2a22_A 115 KIGLMHGNQVLPWDDPGSLEQWQRRLDCDILVTGHTHKL 153 (215)
T ss_dssp EEEEECSTTSSSTTCHHHHHHHHHHHTCSEEEECSSCCC
T ss_pred EEEEEcCCccCCCCCHHHHHHHHhhcCCCEEEECCcCCC
Confidence 344556654 456777777789999999987654
No 369
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.89 E-value=87 Score=16.32 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
+...+..++..+|++++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 38 ~~a~~~l~~~~~dlvllD~~l~~-~~g---~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 38 RDAIQFIERSKPQLIILDLKLPD-MSG---EDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSBCSS-SBH---HHHHHHHHHTTCCCEEEEEESS
T ss_pred HHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhcCCCCCEEEEEec
Confidence 34445556678999999866322 111 0223444333 35888888543
No 370
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=23.88 E-value=1.6e+02 Score=19.21 Aligned_cols=49 Identities=6% Similarity=-0.058 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
..+++.+++.++|.|.+.......... +--.....+-+..++||+.+-.
T Consensus 253 ~~~a~~l~~~G~d~i~v~~~~~~~~~~-~~~~~~~~i~~~~~iPvi~~Gg 301 (365)
T 2gou_A 253 TAAAALLNKHRIVYLHIAEVDWDDAPD-TPVSFKRALREAYQGVLIYAGR 301 (365)
T ss_dssp HHHHHHHHHTTCSEEEEECCBTTBCCC-CCHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCCC-ccHHHHHHHHHHCCCcEEEeCC
Confidence 456777888899999997653211111 1113466777888899988743
No 371
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=23.63 E-value=85 Score=20.81 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=19.2
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+|.||+=... ....+.+.+.+.+||+=
T Consensus 127 ~D~IviR~~~---------~~~~~~lA~~s~vPVIN 153 (365)
T 4amu_A 127 YDGIEFRGFA---------QSDVDALVKYSGVPVWN 153 (365)
T ss_dssp CSEEEEECSC---------HHHHHHHHHHHCSCEEE
T ss_pred CcEEEEecCC---------hhHHHHHHHhCCCCEEe
Confidence 8999884321 24567888999999753
No 372
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=23.61 E-value=1.3e+02 Score=18.08 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
.++.....++|-|++......... ..-+-+....+|++++....
T Consensus 53 ~i~~l~~~~vdgiIi~~~~~~~~~------~~~~~~~~~~iPvV~~~~~~ 96 (305)
T 3g1w_A 53 VLEQAIAKNPAGIAISAIDPVELT------DTINKAVDAGIPIVLFDSGA 96 (305)
T ss_dssp HHHHHHHHCCSEEEECCSSTTTTH------HHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHhCCCEEEEcCCCHHHHH------HHHHHHHHCCCcEEEECCCC
Confidence 344444567787777543322111 12244566789999996543
No 373
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=23.56 E-value=98 Score=19.36 Aligned_cols=41 Identities=15% Similarity=-0.049 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
...+.+..+++++|+|+..+. ....+..+.+...+|++.+-
T Consensus 91 ~~~l~~~l~~~~pD~Vi~d~~---------~~~~~~~aA~~~giP~v~~~ 131 (402)
T 3ia7_A 91 LRAAEEALGDNPPDLVVYDVF---------PFIAGRLLAARWDRPAVRLT 131 (402)
T ss_dssp HHHHHHHHTTCCCSEEEEEST---------THHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhccCCCEEEECch---------HHHHHHHHHHhhCCCEEEEe
Confidence 356777888899999997321 01123455677889988874
No 374
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.55 E-value=1.4e+02 Score=18.49 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=29.6
Q ss_pred ceEEEEEecCCHHH---HHHHHHHh-cCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 4 VNAQTLILDGDARD---VICQAVEQ-MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 4 v~~~~~~~~g~~~~---~I~~~a~~-~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+++......+++.. .|.++... .++|-||+... ... ....-+.+....+||+.+-...
T Consensus 35 ~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~-~~~------~~~~~~~~~~~giPvV~~~~~~ 96 (350)
T 3h75_A 35 LDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-QYV------APQILRLSQGSGIKLFIVNSPL 96 (350)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-SSH------HHHHHHHHTTSCCEEEEEESCC
T ss_pred CeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc-hhh------HHHHHHHHHhCCCcEEEEcCCC
Confidence 34444433445443 23344443 68888877431 110 1112234556789999996543
No 375
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.54 E-value=87 Score=16.21 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=22.0
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
..+|++++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 61 ~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 61 PRPAVILLDLNLPG-TDG---REVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp CCCSEEEECSCCSS-SCH---HHHHHHHTTSTTGGGSCEEEEESC
T ss_pred CCCcEEEEECCCCC-CCH---HHHHHHHHhCcccCCCeEEEEeCC
Confidence 68999999866322 111 0223444443 45899888543
No 376
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=23.53 E-value=91 Score=16.44 Aligned_cols=47 Identities=11% Similarity=0.192 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhh-----hCCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAH-----HAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~-----~~~~Pvlvv~~~ 67 (81)
++.++..++..+|+|++...-.. ...+ ...+.+-. ...+|++++-..
T Consensus 48 ~~al~~~~~~~~dlvl~D~~mp~-~~g~---~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 48 EQVLDAMAEEDYDAVIVDLHMPG-MNGL---DMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhchhccCCCCeEEEEeCC
Confidence 44555667789999999866322 1111 22233321 134789988654
No 377
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=23.47 E-value=98 Score=19.00 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=19.6
Q ss_pred eEEEEEecCCHHHHHHHHHH-hcCCCEEEEccc
Q 038513 5 NAQTLILDGDARDVICQAVE-QMHIDLLVVGSR 36 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~-~~~~dliVmG~~ 36 (81)
++...+-.|--.+.+.+..+ ..++|.+|+|+.
T Consensus 187 ~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 187 EKLINIDGSMTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp GCEEEEESSCCHHHHHHHHHSSSCCCCEEECGG
T ss_pred CceEEEECCcCHHHHHHHHHhCCCCcEEEEeeH
Confidence 44455555544555555543 158999999965
No 378
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=23.38 E-value=62 Score=23.75 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGL 38 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~ 38 (81)
.+.+.+++.+.++++|+|++.+...
T Consensus 642 v~~eeiv~aA~e~~adiVglSsl~~ 666 (762)
T 2xij_A 642 QTPREVAQQAVDADVHAVGVSTLAA 666 (762)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEECSS
T ss_pred CCHHHHHHHHHHcCCCEEEEeeecH
Confidence 4779999999999999999987643
No 379
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=23.18 E-value=79 Score=20.47 Aligned_cols=52 Identities=6% Similarity=0.054 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCcee-cCcHHHHHhhh---CCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAF-LGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~-~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
.+.+++.+.+.++|+|+++.-=-....... .-....+.+.. .++||++++..
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v~GN 104 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIVAGN 104 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEECCCG
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 567888888899999999754211110000 00012333433 37999999754
No 380
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=23.17 E-value=42 Score=23.12 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=23.8
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEE
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVV 33 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVm 33 (81)
.....+..|++.+. .+++++.+++.|+.
T Consensus 108 G~~L~v~~G~p~~v-~~L~~~~~a~~V~~ 135 (506)
T 3umv_A 108 HLPFFLFTGGPAEI-PALVQRLGASTLVA 135 (506)
T ss_dssp TCCEEEESSCTTHH-HHHHHHTTCSEEEE
T ss_pred CCceEEEecChHHH-HHHHHhcCCCEEEe
Confidence 34456778999999 99999999999996
No 381
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=23.14 E-value=80 Score=15.63 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
++..+..+...+|++++...-.. ...+ ...+.+-+. ..+|++++-..
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 35 EEALKKFFSGNYDLVILDIEMPG-ISGL---EVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHccCCCCeEEEEECC
Confidence 44445556678999999876322 1111 223444333 34888888543
No 382
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=23.14 E-value=68 Score=18.79 Aligned_cols=23 Identities=9% Similarity=0.333 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
..+.|.+..++.++|+|.+--..
T Consensus 22 ~~~~i~~~i~~~~~DIi~LQEv~ 44 (266)
T 3teb_A 22 KIDILARTIAEKQYDVIAMQEVN 44 (266)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEEcc
Confidence 35678888888999999986553
No 383
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=23.08 E-value=78 Score=22.65 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+|.||+|+. +.|++....+.+...-||++-..
T Consensus 8 ~~D~~i~GtG--------l~~~~~a~~~~~~g~~vl~id~~ 40 (650)
T 1vg0_A 8 DFDVIVIGTG--------LPESIIAAACSRSGQRVLHVDSR 40 (650)
T ss_dssp BCSEEEECCS--------HHHHHHHHHHHHTTCCEEEECSS
T ss_pred cCCEEEECCc--------HHHHHHHHHHHhCCCEEEEEcCC
Confidence 5899999865 55788888888889999998654
No 384
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=23.07 E-value=79 Score=20.76 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=19.4
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILI 63 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlv 63 (81)
+|.||+=+.. ....+.+.+++++||+=
T Consensus 126 ~D~IviR~~~---------~~~~~~lA~~~~vPVIN 152 (340)
T 4ep1_A 126 IDGIMIRTFS---------HADVEELAKESSIPVIN 152 (340)
T ss_dssp CSEEEEECSC---------HHHHHHHHHHCSSCEEE
T ss_pred CCEEEEecCC---------hhHHHHHHHhCCCCEEe
Confidence 8988885432 25567888899999763
No 385
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.05 E-value=1.3e+02 Score=18.20 Aligned_cols=43 Identities=12% Similarity=-0.035 Sum_probs=23.4
Q ss_pred HHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 20 CQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 20 ~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
++.....++|-|++........ ...-+-+....+||+++-...
T Consensus 52 i~~~~~~~vdgiIi~~~~~~~~------~~~~~~~~~~giPvV~~~~~~ 94 (330)
T 3uug_A 52 IENMVTKGVKVLVIASIDGTTL------SDVLKQAGEQGIKVIAYDRLI 94 (330)
T ss_dssp HHHHHHHTCSEEEECCSSGGGG------HHHHHHHHHTTCEEEEESSCC
T ss_pred HHHHHHcCCCEEEEEcCCchhH------HHHHHHHHHCCCCEEEECCCC
Confidence 3334445677777654321111 112344667789999996543
No 386
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.05 E-value=84 Score=16.86 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+..+.+.+++++.++.+|++-.+-.... ....+++-+....|+++.=+..
T Consensus 33 e~~~~~~~l~~~~digIIlIte~~a~~i-----~~~i~~~~~~~~~P~Il~IPs~ 82 (109)
T 2d00_A 33 EAQSLLETLVERGGYALVAVDEALLPDP-----ERAVERLMRGRDLPVLLPIAGL 82 (109)
T ss_dssp HHHHHHHHHHHHCCCSEEEEETTTCSCH-----HHHHHHHTTCCCCCEEEEESCG
T ss_pred HHHHHHHHHhhCCCeEEEEEeHHHHHhh-----HHHHHHHHhCCCCeEEEEECCC
Confidence 4566788888888999999976632221 2334555545668877754433
No 387
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=23.00 E-value=1.2e+02 Score=17.52 Aligned_cols=46 Identities=2% Similarity=-0.115 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCCC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
..+.+++.+++.++|+|+...-=.. ...-+.++....|+++|+..-
T Consensus 40 ~l~~~l~~~~~~~~D~ii~~GDl~~--------~~~~~~l~~l~~~~~~V~GNh 85 (190)
T 1s3l_A 40 NIRKAIEIFNDENVETVIHCGDFVS--------LFVIKEFENLNANIIATYGNN 85 (190)
T ss_dssp HHHHHHHHHHHSCCSEEEECSCCCS--------THHHHHGGGCSSEEEEECCTT
T ss_pred HHHHHHHHHhhcCCCEEEECCCCCC--------HHHHHHHHhcCCCEEEEeCCC
Confidence 3456677777779999988654211 124445566678999998553
No 388
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=22.99 E-value=69 Score=18.77 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCCCEEEEcccC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~ 37 (81)
.+.|.++.++.++|+|++--..
T Consensus 15 ~~~i~~~i~~~~~Dii~LQE~~ 36 (268)
T 1ako_A 15 PHQLEAIVEKHQPDVIGLQETK 36 (268)
T ss_dssp HHHHHHHHHHHCCSEEEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEEecc
Confidence 5678899999999999986543
No 389
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=22.75 E-value=28 Score=23.56 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.8
Q ss_pred cCCHHHHHHHHHHhcCCCEEEEccc
Q 038513 12 DGDARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 12 ~g~~~~~I~~~a~~~~~dliVmG~~ 36 (81)
.|++.+.|.+++++++++-|+.-..
T Consensus 80 ~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 80 FVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEecc
Confidence 6899999999999999999888443
No 390
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=22.68 E-value=85 Score=20.18 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++.+..++.++|++|+...++- + ...++...+-..+-+++
T Consensus 75 ~~~~~~l~~~~~Dliv~~~y~~i-----l----p~~~l~~~~~g~iNiHp 115 (318)
T 3q0i_A 75 DESKQQLAALNADLMVVVAYGLL-----L----PKVVLDTPKLGCINVHG 115 (318)
T ss_dssp HHHHHHHHTTCCSEEEESSCCSC-----C----CHHHHTSSTTCEEEEES
T ss_pred HHHHHHHHhcCCCEEEEeCcccc-----C----CHHHHhhCcCCEEEeCC
Confidence 46778888899999999766421 1 34555555555555554
No 391
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=22.62 E-value=94 Score=19.64 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEE
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIV 64 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv 64 (81)
..++.|.+.+...+.+|+++|.. +. -||...+..+....|++-=
T Consensus 129 ~~A~av~~av~~~d~~L~l~~l~----~~---~gs~~~~~A~~~Gl~~~~E 172 (252)
T 2x5e_A 129 ELLRAVLDACAAYRKGLPLMVLA----LA---DNGRELELADEADVPLLFE 172 (252)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEC----CS---CCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEeC----CC---CCCHHHHHHHHcCCcEEEE
Confidence 46788999999999999999843 11 1677888888888888753
No 392
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=22.57 E-value=1.8e+02 Score=19.57 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=37.4
Q ss_pred ce-EEEEEecCC---HHHHHHHHHHhcCCCEEEEcccCCCCC--------CceecC--------cHHHHHhhhC--CccE
Q 038513 4 VN-AQTLILDGD---ARDVICQAVEQMHIDLLVVGSRGLGKV--------KRAFLG--------SVSDYCAHHA--VCPI 61 (81)
Q Consensus 4 v~-~~~~~~~g~---~~~~I~~~a~~~~~dliVmG~~~~~~~--------~~~~~g--------s~~~~vi~~~--~~Pv 61 (81)
++ +-..+..+- -...|.+.+++.++|-|++..+..... ...+-| ....++-+.. .+||
T Consensus 269 ~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPI 348 (415)
T 3i65_A 269 KPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPI 348 (415)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCE
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCE
Confidence 44 455555542 356788889999999999887653221 112223 2344555556 6898
Q ss_pred EEEC
Q 038513 62 LIVK 65 (81)
Q Consensus 62 lvv~ 65 (81)
+.+-
T Consensus 349 Ig~G 352 (415)
T 3i65_A 349 IASG 352 (415)
T ss_dssp EECS
T ss_pred EEEC
Confidence 8764
No 393
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=22.40 E-value=79 Score=18.69 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
-.+.|.+..++.++|+|.+---
T Consensus 26 r~~~i~~~i~~~~~DIv~LQEv 47 (267)
T 3g6s_A 26 RKDRVCQFIKDHELDIVGMQEV 47 (267)
T ss_dssp THHHHHHHHHHTTCSEEEEESB
T ss_pred HHHHHHHHHHHcCCCEEEEecC
Confidence 3477889999999999998544
No 394
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=22.39 E-value=1.1e+02 Score=19.10 Aligned_cols=44 Identities=14% Similarity=0.210 Sum_probs=29.7
Q ss_pred CCCEEEEcccCCCCCCce--ecCcHH-HHHhhhCCccEEEECCCCCC
Q 038513 27 HIDLLVVGSRGLGKVKRA--FLGSVS-DYCAHHAVCPILIVKPPKEH 70 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~--~~gs~~-~~vi~~~~~Pvlvv~~~~~~ 70 (81)
++|.+++|+.+-..-... -.|+-. ..+.++..+|++|+-+..+.
T Consensus 177 ~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V~a~~~K~ 223 (276)
T 1vb5_A 177 EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYKF 223 (276)
T ss_dssp TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGB
T ss_pred cCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEEecccccc
Confidence 799999999875433222 156654 45566777999999765443
No 395
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=22.36 E-value=1.3e+02 Score=17.77 Aligned_cols=20 Identities=10% Similarity=-0.016 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCCEEEEcccC
Q 038513 18 VICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~ 37 (81)
.+.++.++.++|+|++--..
T Consensus 21 ~l~~~i~~~~~DIv~LQEt~ 40 (265)
T 3g91_A 21 GFLKWFMEEKPDILCLQEIK 40 (265)
T ss_dssp THHHHHHHHCCSEEEEECCC
T ss_pred hHHHHHHhcCCCEEEEEecc
Confidence 48899999999999997553
No 396
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=22.29 E-value=22 Score=23.54 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCC------CCCc------ee-----cCcHHHHHhhhCCccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLG------KVKR------AF-----LGSVSDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~------~~~~------~~-----~gs~~~~vi~~~~~Pvlvv~~~~ 68 (81)
+...++++.|++.+..+|+-.+.+.. ++.. .+ +......+..++++||.+-=+..
T Consensus 40 e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~~~~VPVaLHlDHg 111 (358)
T 1dos_A 40 DSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHC 111 (358)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 56789999999999999998877532 1111 12 23345667778899998775443
No 397
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=22.28 E-value=77 Score=21.29 Aligned_cols=21 Identities=14% Similarity=0.400 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCEEEEccc
Q 038513 16 RDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~ 36 (81)
.+.+++.+.+.++|+|+++.-
T Consensus 41 l~~lv~~~~~~~~D~VliaGD 61 (417)
T 4fbw_A 41 FNEILEIARERDVDMILLGGD 61 (417)
T ss_dssp HHHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHHhcCCCEEEEcCc
Confidence 477889999999999999754
No 398
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=22.21 E-value=92 Score=19.93 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
.+++.+..++.++|++|+...++- ....++...+...+-+++.
T Consensus 70 ~~~~~~~l~~~~~Dliv~~~y~~i---------lp~~il~~~~~g~iNiHpS 112 (314)
T 1fmt_A 70 PQENQQLVAELQADVMVVVAYGLI---------LPKAVLEMPRLGCINVHGS 112 (314)
T ss_dssp SHHHHHHHHHTTCSEEEEESCCSC---------CCHHHHHSSTTCEEEEESS
T ss_pred CHHHHHHHHhcCCCEEEEeecccc---------CCHHHHhhccCCEEEEcCC
Confidence 356778888899999999866421 1456666666666666543
No 399
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=22.19 E-value=1.4e+02 Score=17.96 Aligned_cols=50 Identities=6% Similarity=-0.167 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCC------ceecCcHHHHHhhhCCccEEEECC
Q 038513 16 RDVICQAVEQMHIDLLVVGSRGLGKVK------RAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~~~~~~~------~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
.+.+++.+.+.++|+|++..---.... ...+ ....+.+...++|+++++.
T Consensus 40 l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~-~~~~~~l~~~~~p~~~v~G 95 (322)
T 2nxf_A 40 LRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRAL-DTVMAELDACSVDVHHVWG 95 (322)
T ss_dssp HHHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHH-HHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHH-HHHHHHHHhcCCcEEEecC
Confidence 344555555678998887643221110 0001 1133556667899999974
No 400
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=22.13 E-value=56 Score=22.30 Aligned_cols=58 Identities=3% Similarity=-0.067 Sum_probs=37.8
Q ss_pred EEEec-CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECCC
Q 038513 8 TLILD-GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 8 ~~~~~-g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
..+.. |++.+.|.+++++++++-|+.-..- .+.. .-......+.+....+++..+...
T Consensus 81 L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~-~~rd~~v~~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 81 LITKRSTDSVASLLDVVKSTGASQIFFNHLY-DPLS-LVRDHRAKDVLTAQGIAVRSFNAD 139 (509)
T ss_dssp EEEEECSCHHHHHHHHHHHHTCCEEEEECCC-SHHH-HHHHHHHHHHHHTTTCEEEEECCS
T ss_pred EEEEeCCCHHHHHHHHHHHcCCCEEEEeccc-CHHH-HHHHHHHHHHHHHcCcEEEEECCC
Confidence 34454 6999999999999999999886432 1111 111223345566678888888654
No 401
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=22.10 E-value=76 Score=18.23 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=17.5
Q ss_pred HHHHHHhcCCCEEEEcccCCCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
..+++++.++|.+|.|.+..+.+
T Consensus 76 ~~~~~~~~~~~~~v~G~r~~~Df 98 (162)
T 4f3r_A 76 LVDFAKTHQANFILRGLRAVSDF 98 (162)
T ss_dssp HHHHHHHTTCCEEEEEECSHHHH
T ss_pred HHHHHHHcCCCEEEECCCchhhh
Confidence 35788889999999997754443
No 402
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=22.05 E-value=94 Score=19.76 Aligned_cols=53 Identities=4% Similarity=-0.006 Sum_probs=33.2
Q ss_pred CHHHH--HHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCC--ccEEEECCC
Q 038513 14 DARDV--ICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAV--CPILIVKPP 67 (81)
Q Consensus 14 ~~~~~--I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~--~Pvlvv~~~ 67 (81)
+..++ +.+.|++.++|-+++-..- ....+--+=..-+.|...++ .|+++..-+
T Consensus 87 ~t~~ai~la~~A~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPiilYn~P 143 (313)
T 3dz1_A 87 GFAAMRRLARLSMDAGAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWVLQDYP 143 (313)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEEEEECH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEEEEeCc
Confidence 44444 4568888999999886543 21111111234567888888 999998643
No 403
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=21.97 E-value=78 Score=21.35 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
..+.+++.+++.++|+|+++.-
T Consensus 59 ~l~~ll~~~~~~~~D~VliaGD 80 (431)
T 3t1i_A 59 TLDEILRLAQENEVDFILLGGD 80 (431)
T ss_dssp HHHHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHHhhcCCCEEEEcCc
Confidence 3477889999999999999643
No 404
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=21.96 E-value=74 Score=18.67 Aligned_cols=23 Identities=4% Similarity=0.004 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCCEEEEcccC
Q 038513 15 ARDVICQAVEQMHIDLLVVGSRG 37 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~~ 37 (81)
..+.+.++.++.++|+|.+--..
T Consensus 33 ~~~~l~~~i~~~~~DIv~lQE~~ 55 (245)
T 1wdu_A 33 ATAELAIEAATRKAAIALIQEPY 55 (245)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCC
T ss_pred HHHHHHHHHhhcCCCEEEEEccc
Confidence 35678899999999999987554
No 405
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=21.95 E-value=34 Score=22.37 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEcccCCCCC-CceecCcHHHHHhhh-CCccEEEEC
Q 038513 14 DARDVICQAVEQMHIDLLVVGSRGLGKV-KRAFLGSVSDYCAHH-AVCPILIVK 65 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dliVmG~~~~~~~-~~~~~gs~~~~vi~~-~~~Pvlvv~ 65 (81)
+...+|++.|++.+..+|+-.+.+.... ..-++.......+.. +.+||.+-=
T Consensus 29 e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValHl 82 (323)
T 2isw_A 29 EQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIHL 82 (323)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEEC
Confidence 5678999999999999999888763211 112233455666666 889988763
No 406
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, KI glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 2x13_A* 2x15_A* 2xe6_A* 2xe7_A* 2xe8_A* 2ybe_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 2x14_A* 2y3i_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* ...
Probab=21.94 E-value=70 Score=21.73 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=35.0
Q ss_pred HHHHhcCCC-EEEEcccCCCCC----CceecCcHHHHHhhhCCccEEEECC
Q 038513 21 QAVEQMHID-LLVVGSRGLGKV----KRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 21 ~~a~~~~~d-liVmG~~~~~~~----~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++-+.++- +|+|.+.|+..- ..+.+..+++++-+...+||-.+++
T Consensus 47 k~ll~~gak~Vil~SHlGRPkg~~~~~~~SL~pva~~L~~lLg~~V~f~~d 97 (416)
T 2wzb_A 47 KFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKD 97 (416)
T ss_dssp HHHHHTTCSEEEEECCCSCCTTSCCHHHHCSHHHHHHHHHHHTSCCEECSC
T ss_pred HHHHHCCCCEEEEEecCCCCCCCCCccccCHHHHHHHHHHHHCCCCeeCCc
Confidence 344456888 999998888733 2456788889999999999988865
No 407
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=21.92 E-value=73 Score=19.44 Aligned_cols=45 Identities=11% Similarity=0.144 Sum_probs=21.9
Q ss_pred eEEEEEecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHH
Q 038513 5 NAQTLILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSD 51 (81)
Q Consensus 5 ~~~~~~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~ 51 (81)
++-..+..+.|.+.+..+.. .+|++.+-+-..+.-.+.|..+..+
T Consensus 108 k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~pGfggQ~f~~~~l~ 152 (231)
T 3ctl_A 108 KVGLILNPETPVEAMKYYIH--KADKITVMTVDPGFAGQPFIPEMLD 152 (231)
T ss_dssp EEEEEECTTCCGGGGTTTGG--GCSEEEEESSCTTCSSCCCCTTHHH
T ss_pred eEEEEEECCCcHHHHHHHHh--cCCEEEEeeeccCcCCccccHHHHH
Confidence 33344444566666665555 5777754333333333334444433
No 408
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=21.87 E-value=31 Score=23.06 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCCEEEEcccCCCCCCceecCcH-HHHHhhhCCccEEEECCCC
Q 038513 27 HIDLLVVGSRGLGKVKRAFLGSV-SDYCAHHAVCPILIVKPPK 68 (81)
Q Consensus 27 ~~dliVmG~~~~~~~~~~~~gs~-~~~vi~~~~~Pvlvv~~~~ 68 (81)
.+|.||+|+-. -|++ +.+|.+....-|||+..+.
T Consensus 17 ~yD~IIVGsG~--------aG~v~A~rLse~~~~~VLvLEaG~ 51 (526)
T 3t37_A 17 NCDIVIVGGGS--------AGSLLAARLSEDPDSRVLLIEAGE 51 (526)
T ss_dssp CEEEEEECCSH--------HHHHHHHHHTTSTTSCEEEECSSB
T ss_pred CeeEEEECccH--------HHHHHHHHHHhCCCCeEEEEcCCC
Confidence 68999999652 2444 5677666778999997654
No 409
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.83 E-value=1.8e+02 Score=19.52 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCEEEEcccCCCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKV 41 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~ 41 (81)
.++.++..++|++++-+.|....
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l~~ 194 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRLQI 194 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHHCCCCEEEEcCCCcccc
Confidence 34445456899999988776544
No 410
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=21.75 E-value=1.4e+02 Score=18.01 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHhc-----CCCEEEEcccCCCCCCceecCcH
Q 038513 14 DARDVICQAVEQM-----HIDLLVVGSRGLGKVKRAFLGSV 49 (81)
Q Consensus 14 ~~~~~I~~~a~~~-----~~dliVmG~~~~~~~~~~~~gs~ 49 (81)
++.++..+|.+.. ..|++++|-...+.....|=|+.
T Consensus 107 ~~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dGH~as~fPg~~ 147 (226)
T 3lwd_A 107 TPEAGVETVAERLESLPWPASAVILGMGGDGHTASLFPDSE 147 (226)
T ss_dssp SHHHHHHHHHHHHHTSCSSBSEEEECCCTTSCBTTBCTTCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEECcCCCCCeeecCCCCh
Confidence 4666665554332 58999999998888877777764
No 411
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=21.74 E-value=1.3e+02 Score=17.62 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..+ .++..++..+|++++...-.. ... -...+.+-.. ..+|++++-..
T Consensus 54 ~~~~~-al~~~~~~~~dlvllD~~lp~-~~g---~~~~~~lr~~~~~~~ii~lt~~ 104 (250)
T 3r0j_A 54 TNGAQ-ALDRARETRPDAVILDVXMPG-MDG---FGVLRRLRADGIDAPALFLTAR 104 (250)
T ss_dssp SSHHH-HHHHHHHHCCSEEEEESCCSS-SCH---HHHHHHHHHTTCCCCEEEEECS
T ss_pred CCHHH-HHHHHHhCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCCEEEEECC
Confidence 34444 444556678999999866322 111 0223444433 35899988654
No 412
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=21.61 E-value=79 Score=20.50 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcc
Q 038513 15 ARDVICQAVEQMHIDLLVVGS 35 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~ 35 (81)
-.+.|.++++++++|+|+.|.
T Consensus 50 d~~~l~~~~~~~~~d~v~~~~ 70 (424)
T 2yw2_A 50 DVEKLAEFAKNEGVDFTIVGP 70 (424)
T ss_dssp CHHHHHHHHHHHTCSEEEECS
T ss_pred CHHHHHHHHHHcCCCEEEECC
Confidence 468899999999999999874
No 413
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=21.53 E-value=78 Score=20.38 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=17.7
Q ss_pred HHHHHHHHHhcCCCEEEEccc
Q 038513 16 RDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~ 36 (81)
.+.|.++.+++++|+|.+=--
T Consensus 139 ~~~I~~~I~~~~PDIV~LQEv 159 (362)
T 4gew_A 139 MKAVAHIVKNVNPDILFLQEV 159 (362)
T ss_dssp HHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEcC
Confidence 467999999999999998654
No 414
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=21.50 E-value=82 Score=20.56 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=16.8
Q ss_pred CCEEEEcccCCCCCCceecCcHHHHHhhhCCccEE
Q 038513 28 IDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPIL 62 (81)
Q Consensus 28 ~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvl 62 (81)
+|.||+=+.. ....+.+.+++.+||+
T Consensus 100 ~D~IviR~~~---------~~~~~~lA~~~~vPVI 125 (333)
T 1duv_G 100 YDGIQYRGYG---------QEIVETLAEYASVPVW 125 (333)
T ss_dssp CSEEEEECSC---------HHHHHHHHHHHSSCEE
T ss_pred CCEEEEEcCC---------chHHHHHHHhCCCCeE
Confidence 7877774331 3446677778888875
No 415
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=21.33 E-value=36 Score=22.76 Aligned_cols=54 Identities=7% Similarity=0.035 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHhcCCCE--EEEcccCCCCCCceecCcHHHHHhhhC--CccEEEECCCC
Q 038513 14 DARDVICQAVEQMHIDL--LVVGSRGLGKVKRAFLGSVSDYCAHHA--VCPILIVKPPK 68 (81)
Q Consensus 14 ~~~~~I~~~a~~~~~dl--iVmG~~~~~~~~~~~~gs~~~~vi~~~--~~Pvlvv~~~~ 68 (81)
+..+.|.+.. .+++++ |++-+.-.+.+-.-=+.++.+.+-.+. .+||+.+..+.
T Consensus 101 kL~~aI~~~~-~~~P~~~~I~V~tTC~~e~IGdDi~~v~~~~~~~~~~~~pVi~v~t~g 158 (437)
T 3aek_A 101 ELDREVAKLL-ERRPDIRQLFLVGSCPSEVLKLDLDRAAERLSGLHAPHVRVYSYTGSG 158 (437)
T ss_dssp HHHHHHHHHH-HTCTTCCEEEEEECHHHHHTTCCHHHHHHHHHHHSTTTCEEEEEECCT
T ss_pred HHHHHHHHHH-HhCCCccEEEEEcCCHHHHhhcCHHHHHHHHHHhcCCCCeEEEeECCC
Confidence 3567777777 888998 888777554433222333333343334 68988887553
No 416
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=21.25 E-value=94 Score=17.45 Aligned_cols=33 Identities=6% Similarity=0.017 Sum_probs=23.3
Q ss_pred EEEecCCH------HHHHHHHHHhcCCCEEEEcccCCCC
Q 038513 8 TLILDGDA------RDVICQAVEQMHIDLLVVGSRGLGK 40 (81)
Q Consensus 8 ~~~~~g~~------~~~I~~~a~~~~~dliVmG~~~~~~ 40 (81)
..+..|.+ .+.+.+.+++.++|+++.|......
T Consensus 80 i~~~Hg~~~~~~~~~~~l~~~~~~~~~d~vi~GHtH~~~ 118 (176)
T 3ck2_A 80 IIQTHGHLFDINFNFQKLDYWAQEEEAAICLYGHLHVPS 118 (176)
T ss_dssp EEEECSGGGTTTTCSHHHHHHHHHTTCSEEECCSSCCEE
T ss_pred EEEECCCccCCCCCHHHHHHHHHhcCCCEEEECCcCCCC
Confidence 44555554 2467777788899999999886543
No 417
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=21.15 E-value=1.3e+02 Score=17.49 Aligned_cols=30 Identities=23% Similarity=0.131 Sum_probs=15.4
Q ss_pred cceEEEEEecCCHHHH----HHHHHHhcCCCEEEEc
Q 038513 3 QVNAQTLILDGDARDV----ICQAVEQMHIDLLVVG 34 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~~----I~~~a~~~~~dliVmG 34 (81)
|+++......+|-.+. |.+.++ ++|+|+..
T Consensus 36 G~~v~~~~iv~Dd~~~I~~~l~~a~~--~~DlVitt 69 (172)
T 3kbq_A 36 GYQVRRGFVVMDDLDEIGWAFRVALE--VSDLVVSS 69 (172)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHH--HCSEEEEE
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHh--cCCEEEEc
Confidence 4455444444443333 334443 48988864
No 418
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.98 E-value=26 Score=18.41 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=25.5
Q ss_pred HHHHHHHHh-cCCCEEEEcccCCCCCCceecCcHHHHHhh---hCCccEEEECCC
Q 038513 17 DVICQAVEQ-MHIDLLVVGSRGLGKVKRAFLGSVSDYCAH---HAVCPILIVKPP 67 (81)
Q Consensus 17 ~~I~~~a~~-~~~dliVmG~~~~~~~~~~~~gs~~~~vi~---~~~~Pvlvv~~~ 67 (81)
++..+..++ ..+|+|++...-.+.... -...+.+-. ...+|++++-..
T Consensus 39 ~~a~~~l~~~~~~dlvi~D~~l~~~~~g---~~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 39 KKFYSIFKDLDSITLIIMDIAFPVEKEG---LEVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHTTTTTCCCCSEEEECSCSSSHHHH---HHHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHHHhcCCCCcEEEEeCCCCCCCcH---HHHHHHHHhCcccCCCCEEEEeCC
Confidence 334445555 789999997652201111 022333333 356899988643
No 419
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=20.86 E-value=81 Score=18.48 Aligned_cols=21 Identities=14% Similarity=0.376 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCCCEEEEccc
Q 038513 16 RDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 16 ~~~I~~~a~~~~~dliVmG~~ 36 (81)
.+.|.+..++.++|+|.+=--
T Consensus 24 ~~~i~~~i~~~~~DIv~LQEv 44 (257)
T 3l1w_A 24 KEAVCQLINFHDWSLCCIQEV 44 (257)
T ss_dssp HHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 356888889999999998643
No 420
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=20.81 E-value=2.1e+02 Score=19.68 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=28.1
Q ss_pred EecCCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHH---hhhCCccEEEEC
Q 038513 10 ILDGDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYC---AHHAVCPILIVK 65 (81)
Q Consensus 10 ~~~g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~v---i~~~~~Pvlvv~ 65 (81)
+..+.-...+.+.+++.++||++=+++++ ..++++ ..+..+|.+.+-
T Consensus 421 v~~~~D~~~l~~~i~~~~pDLlig~s~~k---------~~a~~~~~~~~~~giP~irig 470 (523)
T 3u7q_B 421 VYIGKDLWHLRSLVFTDKPDFMIGNSYGK---------FIQRDTLHKGKEFEVPLIRIG 470 (523)
T ss_dssp EEESCCHHHHHHHHHHTCCSEEEECTTHH---------HHHHHHHHHCGGGCCCEEECS
T ss_pred EEECCCHHHHHHHHHhcCCCEEEECccHH---------HHHHHhhcccccCCCceEEec
Confidence 34454456677777788899888765531 112223 222389988764
No 421
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=20.68 E-value=93 Score=20.48 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCCEEEEccc
Q 038513 15 ARDVICQAVEQMHIDLLVVGSR 36 (81)
Q Consensus 15 ~~~~I~~~a~~~~~dliVmG~~ 36 (81)
-.+.|.++++++++|+|+.+..
T Consensus 71 d~~~l~~~~~~~~~d~vi~~~E 92 (451)
T 2yrx_A 71 DIEALVQFAKQQAIDLTIVGPE 92 (451)
T ss_dssp CHHHHHHHHHHTTCSEEEECSH
T ss_pred CHHHHHHHHHHcCCCEEEECCc
Confidence 3578999999999999998643
No 422
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=20.57 E-value=1.9e+02 Score=19.53 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCC
Q 038513 19 ICQAVEQMHIDLLVVGSRGLGKVK 42 (81)
Q Consensus 19 I~~~a~~~~~dliVmG~~~~~~~~ 42 (81)
.++.++.+++|++++-+.|+....
T Consensus 174 al~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHHHhCCCCEEEEECCCcccch
Confidence 345666678999999988876544
No 423
>4h1s_A 5'-nucleotidase; hydrolase; HET: NAG; 2.20A {Homo sapiens}
Probab=20.45 E-value=1e+02 Score=20.94 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcH--HHHHhhhCCccEEEEC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSV--SDYCAHHAVCPILIVK 65 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~--~~~vi~~~~~Pvlvv~ 65 (81)
+.+.+..+..++|..++|.|.-. .|.- .+.++..+..|+|...
T Consensus 74 ~~~i~~mN~lgyDa~~lGNHEFd------~G~~~l~~~~~~~a~fp~L~aN 118 (530)
T 4h1s_A 74 AEVAHFMNALRYDAMALGNHEFD------NGVEGLIEPLLKEAKFPILSAN 118 (530)
T ss_dssp HHHHHHHHHTTCCEEECCGGGGT------TTTHHHHTTTTTTCSSCEECTT
T ss_pred hHHHHHHhccCCCEEEEchhhhc------cCHHHHHHHHHhhCCCCEEEEe
Confidence 44567777888999999988432 3432 3456777888887643
No 424
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=20.43 E-value=1.9e+02 Score=18.94 Aligned_cols=49 Identities=2% Similarity=-0.046 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
..+++.+++.++|.|-+.............-.....+-+..++||+.+-
T Consensus 258 ~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~G 306 (377)
T 2r14_A 258 FYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCG 306 (377)
T ss_dssp HHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEEC
Confidence 4567777888999999966432111000012456778888889998874
No 425
>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1
Probab=20.39 E-value=1.1e+02 Score=16.51 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=11.6
Q ss_pred cCCCEEEEcccCCC
Q 038513 26 MHIDLLVVGSRGLG 39 (81)
Q Consensus 26 ~~~dliVmG~~~~~ 39 (81)
.++|+|++|+..+.
T Consensus 60 ~~~evlliGTG~~~ 73 (113)
T 1ihn_A 60 EKPESIIIGSGVHG 73 (113)
T ss_dssp TCCSEEEEECCTTC
T ss_pred cCCCEEEECCCCCc
Confidence 47999999998663
No 426
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=20.34 E-value=1.3e+02 Score=20.39 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=35.3
Q ss_pred HHHHhcCCCEEEEcccCCCCC-------------------CceecCcHHHHHhhhCCccEEEECCC
Q 038513 21 QAVEQMHIDLLVVGSRGLGKV-------------------KRAFLGSVSDYCAHHAVCPILIVKPP 67 (81)
Q Consensus 21 ~~a~~~~~dliVmG~~~~~~~-------------------~~~~~gs~~~~vi~~~~~Pvlvv~~~ 67 (81)
+++-+.++-+|+|.+.|+..- ..+.+..+++++-+...+||-.++.-
T Consensus 44 ~~ll~~Gakvil~SHlGRPkg~~~~~~~~~~~~~~~~~~~~~~SL~pva~~Ls~lLg~~V~f~~d~ 109 (415)
T 16pk_A 44 KKVLTEGGSCVLMSHLGRPKGIPMAQAGKIRSTGGVPGFQQKATLKPVAKRLSELLLRPVTFAPDC 109 (415)
T ss_dssp HHHHHTTCEEEEECCCSCCCCBCGGGHHHHHHTTCCTTCCGGGCSHHHHHHHHHHHTSCCEEESCT
T ss_pred HHHHHCCCEEEEEecCCCCCCcccccccccccccccccCCcccCHHHHHHHHHHHhCCCCeeCCcc
Confidence 344456899999998887632 34557788889999999999888753
No 427
>3gve_A YFKN protein; alpha-beta-BETA-alpha sandwich, structural genomics, PSI-2, structure initiative; HET: CIT; 1.25A {Bacillus subtilis subsp}
Probab=20.34 E-value=1.8e+02 Score=18.66 Aligned_cols=52 Identities=8% Similarity=-0.056 Sum_probs=28.1
Q ss_pred CHHHHHHH---HHHhcCCCEEEEcccCCCCCCcee--cCcHHHHHhhhCC-ccEEEEC
Q 038513 14 DARDVICQ---AVEQMHIDLLVVGSRGLGKVKRAF--LGSVSDYCAHHAV-CPILIVK 65 (81)
Q Consensus 14 ~~~~~I~~---~a~~~~~dliVmG~~~~~~~~~~~--~gs~~~~vi~~~~-~Pvlvv~ 65 (81)
++.+++.+ ..++.++|+||+-+|.--...... .......+.+..+ +.+++--
T Consensus 191 d~~~~~~~~v~~Lk~~g~D~II~l~H~G~~~d~~~~~~e~~~~~lA~~v~giD~IigG 248 (341)
T 3gve_A 191 DIVESANETIPKMKAEGADVIIALAHTGIEKQAQSSGAENAVFDLATKTKGIDAIISG 248 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEECCCCCSSCCCTTCSSCHHHHHHHCSCCCEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeccCccccccccccchhHHHHHhcCCCCcEEEEC
Confidence 44455444 445567999998887543222110 1122335665555 7777763
No 428
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=20.32 E-value=1.3e+02 Score=17.18 Aligned_cols=32 Identities=3% Similarity=0.075 Sum_probs=15.6
Q ss_pred cceEEEEEecCCHHH----HHHHHHHhcCCCEEEEc
Q 038513 3 QVNAQTLILDGDARD----VICQAVEQMHIDLLVVG 34 (81)
Q Consensus 3 ~v~~~~~~~~g~~~~----~I~~~a~~~~~dliVmG 34 (81)
|.++......+|-.+ +|.+.+++.++|+|+..
T Consensus 41 G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 41 GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred CCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 344444333343333 34344443359988774
No 429
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.31 E-value=1e+02 Score=15.88 Aligned_cols=38 Identities=5% Similarity=0.086 Sum_probs=22.0
Q ss_pred cCCCEEEEcccCCCCCCceecCcHHHHHhhh---CCccEEEECCC
Q 038513 26 MHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH---AVCPILIVKPP 67 (81)
Q Consensus 26 ~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~---~~~Pvlvv~~~ 67 (81)
..+|+|++...-.. ...+ ...+.+-.. ..+|++++-..
T Consensus 58 ~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 58 IHPKLILLDINIPK-MNGI---EFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp CCCSEEEEETTCTT-SCHH---HHHHHHTTSGGGTTCEEEEEESC
T ss_pred CCCCEEEEecCCCC-CCHH---HHHHHHHcCccccCCcEEEEeCC
Confidence 68999999875332 1110 223444433 46898888543
No 430
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=20.22 E-value=1.7e+02 Score=18.38 Aligned_cols=38 Identities=13% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEEC
Q 038513 18 VICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVK 65 (81)
Q Consensus 18 ~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~ 65 (81)
.+.+.++++++|+|+.... +-.+..+.+...+|++.+-
T Consensus 114 ~l~~~~~~~~pDlVv~d~~----------~~~~~~~a~~~giP~v~~~ 151 (398)
T 4fzr_A 114 EALALAERWKPDLVLTETY----------SLTGPLVAATLGIPWIEQS 151 (398)
T ss_dssp HHHHHHHHHCCSEEEEETT----------CTHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHhCCCCEEEECcc----------ccHHHHHHHhhCCCEEEec
Confidence 5777888899999884321 1113344556778877764
No 431
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=20.15 E-value=1e+02 Score=15.79 Aligned_cols=50 Identities=8% Similarity=0.026 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhh-CCccEEEECCC
Q 038513 13 GDARDVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHH-AVCPILIVKPP 67 (81)
Q Consensus 13 g~~~~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~-~~~Pvlvv~~~ 67 (81)
.+..+ ..+..++..+|++++...-.. ...+ ...+.+-.. ..+|++++-..
T Consensus 34 ~~~~~-al~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 34 ATAGE-GLAKIENEFFNLALFXIKLPD-MEGT---ELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp SSHHH-HHHHHHHSCCSEEEECSBCSS-SBHH---HHHHHHHHHCTTSEEEEEESC
T ss_pred CCHHH-HHHHHhcCCCCEEEEecCCCC-CchH---HHHHHHHhhCCCCcEEEEecc
Confidence 34434 445556678999999866322 1111 223444333 35898888543
No 432
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=20.13 E-value=1e+02 Score=19.77 Aligned_cols=41 Identities=20% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCCceecCcHHHHHhhhCCccEEEECC
Q 038513 17 DVICQAVEQMHIDLLVVGSRGLGKVKRAFLGSVSDYCAHHAVCPILIVKP 66 (81)
Q Consensus 17 ~~I~~~a~~~~~dliVmG~~~~~~~~~~~~gs~~~~vi~~~~~Pvlvv~~ 66 (81)
+++.+..++.++|++|+-..++- ....++...+...+-+++
T Consensus 70 ~~~~~~l~~~~~Dliv~~~~~~i---------lp~~il~~~~~g~iNiHp 110 (314)
T 3tqq_A 70 EVEQEKLIAMNADVMVVVAYGLI---------LPKKALNAFRLGCVNVHA 110 (314)
T ss_dssp HHHHHHHHTTCCSEEEEESCCSC---------CCHHHHTSSTTCEEEEES
T ss_pred HHHHHHHHhcCCCEEEEcCcccc---------cCHHHHhhCcCCEEEecC
Confidence 46778888899999999876421 134556655555565554
Done!