BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>038515
ISSLPDPDPETIQPLVVSTTSPSPPATIPAFPEQSNVAGCPLDLPEELFHSVKSACTGGH
LTTTQASSQLTRSRCCPVLATWLYAAYSATALGRAATETAKTPATRSVDLPLLPDDSETC
VDDLGKAMKQRGIDLPRPNETCDVVYCYCGIRLHPLTCPEAFSLNPRGKLVGNVNVKRLE
RHCLSSSNNVNGFPGLGGCNKCLNSLYQLNKKTFNTSKAEDRTTKMHNKDCQLMGLTWLL
EKNRTAYIHTVSAVIRAMMLSRDGFEPQSCTLSSDGMPLAVDSSDIYNQSSSITLAVPFY
LSFVSLWLLFMSFAVSSSRF

High Scoring Gene Products

Symbol, full name Information P value
AT3G18050 protein from Arabidopsis thaliana 1.2e-88
AT4G28100 protein from Arabidopsis thaliana 3.1e-51

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  038515
        (320 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2092732 - symbol:AT3G18050 "AT3G18050" species...   885  1.2e-88   1
TAIR|locus:2132942 - symbol:AT4G28100 "AT4G28100" species...   532  3.1e-51   1


>TAIR|locus:2092732 [details] [associations]
            symbol:AT3G18050 "AT3G18050" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0009740 "gibberellic acid mediated signaling pathway"
            evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0031225 EMBL:AB020749
            HOGENOM:HOG000242368 ProtClustDB:CLSN2689656 EMBL:AY054683
            EMBL:BT000057 IPI:IPI00533265 RefSeq:NP_566596.1 UniGene:At.22297
            STRING:Q9LV36 EnsemblPlants:AT3G18050.1 GeneID:821330
            KEGG:ath:AT3G18050 TAIR:At3g18050 eggNOG:NOG280396
            InParanoid:Q9LV36 OMA:GCPLDLP PhylomeDB:Q9LV36 ArrayExpress:Q9LV36
            Genevestigator:Q9LV36 Uniprot:Q9LV36
        Length = 335

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 182/314 (57%), Positives = 221/314 (70%)

Query:     1 ISSLPDPDPETIQPLVVXXXXXXXXXXIPAFPEQSNVAGCPLDLPEELFHSVKSACTGGH 60
             I S   P+P T+QP  V          IPAFPEQS+ +GCPLDLPE+LFH +KSAC+G  
Sbjct:    19 ILSPVSPEPVTVQPFRVKSSPPAT---IPAFPEQSDFSGCPLDLPEDLFHGIKSACSG-- 73

Query:    61 LTTTQASSQLTRSRCCPVLATWLYAAYSATALGRAATETAKTPATRSV-------DLPLL 113
                     +L + +CCPVL  WLY+AYS TAL R+ +  A+  ++ S        D+PLL
Sbjct:    74 -------KKLHKGKCCPVLGAWLYSAYSTTALSRSISAAARNSSSSSAAVTTPEEDMPLL 126

Query:   114 PDDSETCVDDLGKAMKQRGIDLPRPNETCDVVYCYCGIRLHPLTCPEAFSLNPRGKLVGN 173
             PDDSETCVD LGK+++QRGI+L RPNETCDVVYCYCGIRLHPL+C EAF +N  G+LVG+
Sbjct:   127 PDDSETCVDGLGKSLRQRGIELTRPNETCDVVYCYCGIRLHPLSCSEAFRVNDEGRLVGD 186

Query:   174 VNVKRLERHCLSSS-NNVNGFPGLGGCNKCLNSLYQLNKK----TFNTSKAE-DRTTKMH 227
               V RLE  CLS S NN +GF  L GCNKCLNSLY+LN K    T N SK + +RT KMH
Sbjct:   187 ERVDRLETDCLSGSHNNADGFSPLLGCNKCLNSLYKLNPKKTSGTRNPSKEDRNRTAKMH 246

Query:   228 NKDCQLMGLTWLLEKNRTAYIHTVSAVIRAMMLSRDGFEPQSCTLSSDGMPLAVDSSDIY 287
             NKDC LMGLTWLL KNRTAY  TV++V+RA+ML+ DG  P+SC L SDGMPLAVDSS+  
Sbjct:   247 NKDCVLMGLTWLLAKNRTAYFPTVTSVLRAVMLNHDGV-PRSCALGSDGMPLAVDSSEFS 305

Query:   288 NQSSSITLAVPFYL 301
             N S + +L  P +L
Sbjct:   306 NGSPT-SLQYPHHL 318


>TAIR|locus:2132942 [details] [associations]
            symbol:AT4G28100 "AT4G28100" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031225 "anchored to membrane" evidence=TAS]
            [GO:0046658 "anchored to plasma membrane" evidence=IDA]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161572 GO:GO:0046658
            EMBL:AL035524 EMBL:AY088158 EMBL:AK175721 EMBL:AK175274
            IPI:IPI00547054 PIR:T02911 RefSeq:NP_567797.1 UniGene:At.27710
            PRIDE:Q9SUC9 EnsemblPlants:AT4G28100.1 GeneID:828926
            KEGG:ath:AT4G28100 TAIR:At4g28100 eggNOG:NOG275374
            HOGENOM:HOG000242368 InParanoid:Q9SUC9 OMA:ARNKTAY PhylomeDB:Q9SUC9
            ProtClustDB:CLSN2689656 Genevestigator:Q9SUC9 GermOnline:AT4G28100
            Uniprot:Q9SUC9
        Length = 304

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 123/291 (42%), Positives = 165/291 (56%)

Query:    28 IPAFPEQSNVAGCPLDLPEELFHSVKSACTGGHLTTTQASSQLTRSRCCPVLATWLYAAY 87
             +PAFP ++    C LDL  ELF  V  AC             L RSRCCPVLA WL+AA+
Sbjct:    34 VPAFPVETQAQSCRLDLSNELFGGVNEAC----------GRNLDRSRCCPVLAAWLFAAH 83

Query:    88 SATALGRAATETAKTPATRSVDLPLLPDDSETCVDDLGKAMKQRGIDLPRPNETCDVVYC 147
             + +AL   A   A TP +   D P+ PDDS+ CV+ L  A+  + I +P+PN +CD + C
Sbjct:    84 ARSALQLPAP--APTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPNSSCDAILC 141

Query:   148 YCGIRLHP---LTCPEAFSLNPRGK-LVGNVNVKRLERHCLSSSNNVNGFPGLGGCNKCL 203
             +CGIRLH    L+CP AF+++   K       VK LE+ C +SS +        GC +CL
Sbjct:   142 FCGIRLHQISSLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSSYS--------GCTRCL 193

Query:   204 NSLYQLNKKTFNTSKAEDRTTKMHNKDCQLMGLTWLLEKNRTAYIHTVSAVIRAMMLSRD 263
              +L +L  +  N     +R TKM +KDCQLMGLTWLL +N+TAYI TVSAV+RA+M S  
Sbjct:   194 GALQKLKVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVLRAIMYSPH 253

Query:   264 GFEPQSCTLSSDGMPLAVDSSDI---YNQSSSITLAVPFYLSFVSLWLLFM 311
                   C+   + MPLAVDS      ++ SS +   +PF L  V    LF+
Sbjct:   254 PPHLNKCSPDQENMPLAVDSLQFQKSFSSSSHLFGVLPF-LPLVLCIFLFL 303


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.132   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      320       310   0.00079  116 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  222 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.87u 0.10s 24.97t   Elapsed:  00:00:01
  Total cpu time:  24.87u 0.10s 24.97t   Elapsed:  00:00:01
  Start:  Sat May 11 10:24:00 2013   End:  Sat May 11 10:24:01 2013

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