BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038515
         (320 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SUC9|UGPI7_ARATH Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis
           thaliana GN=At4g28100 PE=1 SV=1
          Length = 304

 Score =  208 bits (530), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/268 (44%), Positives = 154/268 (57%), Gaps = 24/268 (8%)

Query: 20  TSPSPPATIPAFPEQSNVAGCPLDLPEELFHSVKSACTGGHLTTTQASSQLTRSRCCPVL 79
             P  P T+PAFP ++    C LDL  ELF  V  AC             L RSRCCPVL
Sbjct: 26  VEPVQPNTVPAFPVETQAQSCRLDLSNELFGGVNEAC----------GRNLDRSRCCPVL 75

Query: 80  ATWLYAAYSATALGRAATETAKTPATRSVDLPLLPDDSETCVDDLGKAMKQRGIDLPRPN 139
           A WL+AA++ +AL   A   A TP +   D P+ PDDS+ CV+ L  A+  + I +P+PN
Sbjct: 76  AAWLFAAHARSALQLPAP--APTPESSDPDEPMKPDDSQKCVNTLQSALLTKQIKIPQPN 133

Query: 140 ETCDVVYCYCGIRLHP---LTCPEAFSLNPRGK-LVGNVNVKRLERHCLSSSNNVNGFPG 195
            +CD + C+CGIRLH    L+CP AF+++   K       VK LE+ C +SS        
Sbjct: 134 SSCDAILCFCGIRLHQISSLSCPAAFNVSSGFKNATPTAAVKNLEKECRNSS-------- 185

Query: 196 LGGCNKCLNSLYQLNKKTFNTSKAEDRTTKMHNKDCQLMGLTWLLEKNRTAYIHTVSAVI 255
             GC +CL +L +L  +  N     +R TKM +KDCQLMGLTWLL +N+TAYI TVSAV+
Sbjct: 186 YSGCTRCLGALQKLKVRGGNKKTTTERGTKMMSKDCQLMGLTWLLARNKTAYIPTVSAVL 245

Query: 256 RAMMLSRDGFEPQSCTLSSDGMPLAVDS 283
           RA+M S        C+   + MPLAVDS
Sbjct: 246 RAIMYSPHPPHLNKCSPDQENMPLAVDS 273


>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
           SV=2
          Length = 1098

 Score = 33.9 bits (76), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 1   ISSLPDPDPETIQPLVVSTTSPSPPATIPAFPE------QSNVAGCPLDLP 45
           + ++P P P+T+ P  V  + P P   IPAFP       +  + G P+ LP
Sbjct: 329 VQTVPQPHPQTLPP-AVPHSVPQPTTAIPAFPPVMVPPFRVPLPGMPIPLP 378


>sp|Q9FX99|Y1497_ARATH Probable receptor-like protein kinase At1g49730 OS=Arabidopsis
           thaliana GN=At1g49730 PE=1 SV=1
          Length = 663

 Score = 32.3 bits (72), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 23/96 (23%)

Query: 38  AGCPLDLPEELFHSVKSACTGGHLTTTQASSQLTRSRCCPVLATWLYAAYSATALGRAAT 97
           A CPLD     F  V + C          S+   R +CC  +      A+ A ++ R A 
Sbjct: 26  ADCPLDFSGSNFTLVATVC----------SNITNRGKCCRYMN-----AFVAVSVARYAN 70

Query: 98  ETAKTPATRSVDLPLLPDDSETCVDDLGKAMKQRGI 133
                    S +L +  D SETC+  + +AM+  G+
Sbjct: 71  --------LSTNLGVTSDLSETCIASISRAMEGYGV 98


>sp|Q8JZM8|MUC4_MOUSE Mucin-4 OS=Mus musculus GN=Muc4 PE=2 SV=1
          Length = 3443

 Score = 32.0 bits (71), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 10/45 (22%)

Query: 138  PNETCDVVYCY----CGIRLHP-----LTCPEAFSLNPRGKLVGN 173
            PN +C V YCY    CGI   P      TCP AF+ N R  L GN
Sbjct: 3146 PNRSCPVNYCYNNGHCGISEAPGCQPTCTCPPAFADN-RCFLAGN 3189


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,629,284
Number of Sequences: 539616
Number of extensions: 4989222
Number of successful extensions: 13972
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 13940
Number of HSP's gapped (non-prelim): 36
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)