Query 038515
Match_columns 320
No_of_seqs 41 out of 43
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 11:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4367 Predicted Zn-finger pr 55.6 4.1 9E-05 42.7 0.2 116 140-258 180-320 (699)
2 PF02257 RFX_DNA_binding: RFX 51.7 8.5 0.00018 31.4 1.4 35 121-155 47-83 (85)
3 cd03035 ArsC_Yffb Arsenate Red 38.6 22 0.00047 28.9 1.8 55 195-249 5-63 (105)
4 TIGR00014 arsC arsenate reduct 36.1 24 0.00051 28.9 1.7 55 195-249 5-66 (114)
5 cd03034 ArsC_ArsC Arsenate Red 35.1 25 0.00055 28.5 1.7 55 195-249 5-65 (112)
6 PRK10026 arsenate reductase; P 32.6 29 0.00063 30.3 1.8 19 195-213 8-26 (141)
7 PRK10853 putative reductase; P 31.2 38 0.00082 28.3 2.2 55 195-249 6-64 (118)
8 cd03036 ArsC_like Arsenate Red 29.8 36 0.00077 27.6 1.8 19 195-213 5-23 (111)
9 TIGR01616 nitro_assoc nitrogen 29.5 36 0.00078 28.9 1.8 51 195-249 7-65 (126)
10 cd03033 ArsC_15kD Arsenate Red 27.5 40 0.00087 27.9 1.7 19 195-213 6-24 (113)
11 TIGR01617 arsC_related transcr 26.6 46 0.00099 27.0 1.9 57 195-251 5-67 (117)
12 PF03960 ArsC: ArsC family; I 25.4 43 0.00093 26.8 1.5 57 195-251 2-64 (110)
13 KOG2164 Predicted E3 ubiquitin 24.3 48 0.001 35.1 1.9 48 23-85 163-220 (513)
14 PF08097 Toxin_26: Conotoxin T 24.1 31 0.00067 19.1 0.3 6 74-79 1-6 (11)
15 cd03032 ArsC_Spx Arsenate Redu 23.9 54 0.0012 26.6 1.8 55 195-249 6-66 (115)
16 PRK12559 transcriptional regul 21.8 61 0.0013 27.4 1.8 55 195-249 6-66 (131)
17 PRK13293 F420-0--gamma-glutamy 21.0 95 0.0021 29.8 3.1 43 110-152 118-171 (245)
18 cd02977 ArsC_family Arsenate R 20.7 68 0.0015 25.2 1.8 19 195-213 5-23 (105)
No 1
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=55.62 E-value=4.1 Score=42.70 Aligned_cols=116 Identities=22% Similarity=0.421 Sum_probs=61.1
Q ss_pred CCCCccee-eeeeeecCCCCCcccc-CC--cCCCcchhhhHHHHHHhhhcCCCCCCCCC------CCCchhHHHHHHHHh
Q 038515 140 ETCDVVYC-YCGIRLHPLTCPEAFS-LN--PRGKLVGNVNVKRLERHCLSSSNNVNGFP------GLGGCNKCLNSLYQL 209 (320)
Q Consensus 140 ~tCDvv~C-yCGIRLh~l~Cp~af~-v~--~~g~~~~~~avrrLEr~C~~ss~n~~~~P------gl~GCSkCL~aL~~l 209 (320)
|.||+-|| -|..|+|+..=|-+-- .- ..|...-.-.+|++-+ |..- ...+.- -.+=|++||.-+.--
T Consensus 180 eqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~-ct~h--~~e~~smyc~~ck~pvc~~clee~khs 256 (699)
T KOG4367|consen 180 EQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVST-CTDH--ELENHSMYCVQCKMPVCYQCLEEGKHS 256 (699)
T ss_pred hhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhh-ccCC--CCCCceEEEEecCChHHHHHHHhhccc
Confidence 78999999 6999999877664431 00 1222211224555543 4321 000000 136799999764321
Q ss_pred h-------c-----ccCCcc---hhhhhhhcccccchhhhhhhHhhhcccchhhhhHHHHHHHH
Q 038515 210 N-------K-----KTFNTS---KAEDRTTKMHNKDCQLMGLTWLLEKNRTAYIHTVSAVIRAM 258 (320)
Q Consensus 210 ~-------~-----~~~n~~---k~~dr~~k~~~rDCqLMGLtWLL~rN~T~Yi~tvtAVlrAl 258 (320)
+ . |+.-+. .-+||++.-.+.==||-|+.=..+.|--.|-.-.-+-+-||
T Consensus 257 ~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q~d~l 320 (699)
T KOG4367|consen 257 SHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDAL 320 (699)
T ss_pred chhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 1 1 000000 12344444444456788888888888887766554444343
No 2
>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.
Probab=51.71 E-value=8.5 Score=31.37 Aligned_cols=35 Identities=34% Similarity=0.670 Sum_probs=16.8
Q ss_pred HhHHHHHHHHc--CCCCCCCCCCCCcceeeeeeeecC
Q 038515 121 VDDLGKAMKQR--GIDLPRPNETCDVVYCYCGIRLHP 155 (320)
Q Consensus 121 v~~l~rAL~~r--Gi~Lp~PN~tCDvv~CyCGIRLh~ 155 (320)
..+.+|-+|.- |+..=|....=..=|||||||++.
T Consensus 47 ~AsFGKlir~vFP~l~~RRLG~RG~SkYhY~Gir~k~ 83 (85)
T PF02257_consen 47 AASFGKLIRQVFPNLKTRRLGTRGQSKYHYCGIRLKP 83 (85)
T ss_dssp HHHHHHHHHHHSTT-EEEEESSTT--EEEEEEEEE--
T ss_pred hHHHHHHHHHHcCCCcccccccCCCcceEEEeEEecC
Confidence 34566666543 222222222333459999999973
No 3
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=38.57 E-value=22 Score=28.93 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=32.2
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhhhHhhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGLTWLLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGLtWLL~rN~T~Yi~ 249 (320)
|..+|++|-.|+.+|+.++-.-.. ..-=+..+..+=.+.+|+-=|+.++-+.|..
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~~yk~ 63 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGTTWRK 63 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCchHHHh
Confidence 467999999999999976422110 0000011111122346777788888888863
No 4
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=36.08 E-value=24 Score=28.88 Aligned_cols=55 Identities=20% Similarity=0.222 Sum_probs=33.4
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhhh-H--hhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGLT-W--LLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGLt-W--LL~rN~T~Yi~ 249 (320)
|.++|++|-.|+.+|+.++-.-.. ..-=+..+-.+=.+.+|+. | |+.++-+.|..
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~ 66 (114)
T TIGR00014 5 HNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKE 66 (114)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHH
Confidence 578999999999999976432110 0000111222334557763 3 88999998875
No 5
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=35.09 E-value=25 Score=28.55 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=33.6
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhh--hhHhhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMG--LTWLLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMG--LtWLL~rN~T~Yi~ 249 (320)
|+.+|+.|-.|+.+|+.++-.-.. ..-=+..+-.+=.+.+| +-=|+.++-+.|..
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~ 65 (112)
T cd03034 5 HNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKE 65 (112)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHH
Confidence 578999999999999976432110 00001222333355566 55688888888864
No 6
>PRK10026 arsenate reductase; Provisional
Probab=32.58 E-value=29 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=16.6
Q ss_pred CCCchhHHHHHHHHhhccc
Q 038515 195 GLGGCNKCLNSLYQLNKKT 213 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~ 213 (320)
|+.+||+|-.|+.||..++
T Consensus 8 ~~p~Cst~RKA~~wL~~~g 26 (141)
T PRK10026 8 HNPACGTSRNTLEMIRNSG 26 (141)
T ss_pred eCCCCHHHHHHHHHHHHCC
Confidence 5789999999999999753
No 7
>PRK10853 putative reductase; Provisional
Probab=31.21 E-value=38 Score=28.26 Aligned_cols=55 Identities=13% Similarity=0.198 Sum_probs=33.7
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhhhHhhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGLTWLLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGLtWLL~rN~T~Yi~ 249 (320)
|..+||+|-.|+.+|+.++-.-.- ..-=+.....+=++-+|+.=|+.+.-|.|..
T Consensus 6 ~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~~~~r~ 64 (118)
T PRK10853 6 GIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRGTTWRK 64 (118)
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCCchHHh
Confidence 678999999999999976332110 0000011111113456877799999999963
No 8
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=29.79 E-value=36 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=16.3
Q ss_pred CCCchhHHHHHHHHhhccc
Q 038515 195 GLGGCNKCLNSLYQLNKKT 213 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~ 213 (320)
|..+|+.|..|+.+|+.++
T Consensus 5 ~~~~C~~c~ka~~~L~~~~ 23 (111)
T cd03036 5 EYPKCSTCRKAKKWLDEHG 23 (111)
T ss_pred ECCCCHHHHHHHHHHHHcC
Confidence 4579999999999999764
No 9
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=29.50 E-value=36 Score=28.89 Aligned_cols=51 Identities=10% Similarity=0.053 Sum_probs=31.5
Q ss_pred CCCchhHHHHHHHHhhcccCCcc-----h---hhhhhhcccccchhhhhhhHhhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTS-----K---AEDRTTKMHNKDCQLMGLTWLLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~-----k---~~dr~~k~~~rDCqLMGLtWLL~rN~T~Yi~ 249 (320)
|+..||+|-.|+.||..++-.-. | ..+.-.+.. +.+|.-=|+.|+.|+|..
T Consensus 7 ~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l----~~~g~~~lin~~~~~~r~ 65 (126)
T TIGR01616 7 EKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF----GNKPVGSWFNRAAPRVKS 65 (126)
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH----HHcCHHHHHhccchHhhh
Confidence 57899999999999997643211 0 011112222 224766688888888853
No 10
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=27.51 E-value=40 Score=27.90 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=16.3
Q ss_pred CCCchhHHHHHHHHhhccc
Q 038515 195 GLGGCNKCLNSLYQLNKKT 213 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~ 213 (320)
|...|++|-.|+.+|+.++
T Consensus 6 ~~p~C~~crkA~~~L~~~g 24 (113)
T cd03033 6 EKPGCANNARQKALLEAAG 24 (113)
T ss_pred ECCCCHHHHHHHHHHHHcC
Confidence 4678999999999999764
No 11
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=26.62 E-value=46 Score=26.99 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=34.6
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhhhH--hhhcccchhhhhH
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGLTW--LLEKNRTAYIHTV 251 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGLtW--LL~rN~T~Yi~tv 251 (320)
+..+|+.|-.++.+|+.++-.-.. ...-+.....+=.+.+|..| |+.++-+.|....
T Consensus 5 ~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~ 67 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALN 67 (117)
T ss_pred eCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCC
Confidence 467999999999999986432110 10001222333355667545 8888888887643
No 12
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=25.45 E-value=43 Score=26.78 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=29.3
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhh--hhHhhhcccchhhhhH
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMG--LTWLLEKNRTAYIHTV 251 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMG--LtWLL~rN~T~Yi~tv 251 (320)
|...|+.|-.|+.+|+.++-.=.. ..-=+...-.+=-+++| +-=|+.++-+.|...-
T Consensus 2 ~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp E-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 467899999999999986433111 00001112222234555 5557777777776543
No 13
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.28 E-value=48 Score=35.06 Aligned_cols=48 Identities=25% Similarity=0.423 Sum_probs=40.1
Q ss_pred CCCCCCCCCCcccc---------cCCCCCCCCcchhhHHHhhhcCCCCCccccCCCCCcCCcchH-HHHHHHH
Q 038515 23 SPPATIPAFPEQSN---------VAGCPLDLPEELFHSVKSACTGGHLTTTQASSQLTRSRCCPV-LATWLYA 85 (320)
Q Consensus 23 s~p~TIPAfPeQs~---------a~~CpL~ls~eLf~gV~saC~~g~~~~~~~~~~l~R~RCCPv-LAAWLyA 85 (320)
+.-++.|-+|++|+ -..||.=|.++.++-.-. || +..|||- |.-|.|+
T Consensus 163 ~~qn~dpD~p~~~e~i~qv~~~t~~~CPICL~~~~~p~~t~-CG--------------HiFC~~CiLqy~~~s 220 (513)
T KOG2164|consen 163 VLQNTDPDAPVDWEDIFQVYGSTDMQCPICLEPPSVPVRTN-CG--------------HIFCGPCILQYWNYS 220 (513)
T ss_pred hhhccCCccccchHHhhhhhcCcCCcCCcccCCCCcccccc-cC--------------ceeeHHHHHHHHhhh
Confidence 33489999999999 679999999999988877 99 5799996 4567776
No 14
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=24.07 E-value=31 Score=19.14 Aligned_cols=6 Identities=67% Similarity=1.863 Sum_probs=4.6
Q ss_pred CcchHH
Q 038515 74 RCCPVL 79 (320)
Q Consensus 74 RCCPvL 79 (320)
.||||+
T Consensus 1 fccpvi 6 (11)
T PF08097_consen 1 FCCPVI 6 (11)
T ss_pred CCcchh
Confidence 488886
No 15
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=23.93 E-value=54 Score=26.57 Aligned_cols=55 Identities=13% Similarity=0.203 Sum_probs=33.0
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhh--hhhHhhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLM--GLTWLLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLM--GLtWLL~rN~T~Yi~ 249 (320)
|..+|+.|-.++++|+.++-.-.. ...-+...-.+=.+.+ |+-=|+.++.+.|..
T Consensus 6 ~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~ 66 (115)
T cd03032 6 TSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKN 66 (115)
T ss_pred eCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHH
Confidence 467999999999999976432110 0100111222223444 555588999999885
No 16
>PRK12559 transcriptional regulator Spx; Provisional
Probab=21.82 E-value=61 Score=27.43 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhh--hhhhHhhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQL--MGLTWLLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqL--MGLtWLL~rN~T~Yi~ 249 (320)
+..+|++|-.|+.+|+.++-.-.. ...=+...-.+=.+. +|+.=|+.++.+.|..
T Consensus 6 ~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~ 66 (131)
T PRK12559 6 TTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQD 66 (131)
T ss_pred eCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHh
Confidence 467999999999999976432110 000011122222444 3444489999999875
No 17
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=20.98 E-value=95 Score=29.85 Aligned_cols=43 Identities=23% Similarity=0.467 Sum_probs=35.8
Q ss_pred CCCCCCChhHHHhHHHHHHHHc-CCCCC--------CC--CCCCCcceeeeeee
Q 038515 110 LPLLPDDSETCVDDLGKAMKQR-GIDLP--------RP--NETCDVVYCYCGIR 152 (320)
Q Consensus 110 mPl~PDDSe~Cv~~l~rAL~~r-Gi~Lp--------~P--N~tCDvv~CyCGIR 152 (320)
.=++|.|....+..+++.|++| |.++. +| +++.+++.++.||.
T Consensus 118 ~~LLP~DPd~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~t~vAIG~aGi~ 171 (245)
T PRK13293 118 LLLLPENPDESAERIREGLEELTGKKVGVIITDTNGRPFRKGQRGVAIGVAGIP 171 (245)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHCCCEEEEEEcCCCcccccCCcceeeeccCch
Confidence 4488999999999999999987 55543 45 88999999999986
No 18
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=20.71 E-value=68 Score=25.20 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=16.2
Q ss_pred CCCchhHHHHHHHHhhccc
Q 038515 195 GLGGCNKCLNSLYQLNKKT 213 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~ 213 (320)
+..+|+.|-.++.+|+.++
T Consensus 5 ~~~~C~~c~ka~~~L~~~~ 23 (105)
T cd02977 5 GNPNCSTSRKALAWLEEHG 23 (105)
T ss_pred ECCCCHHHHHHHHHHHHcC
Confidence 4579999999999999764
Done!