Query 038515
Match_columns 320
No_of_seqs 41 out of 43
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 20:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dp7_P MHC class II transcript 65.5 2.4 8.3E-05 32.6 1.6 35 121-155 40-76 (76)
2 3rdw_A Putative arsenate reduc 42.6 19 0.00066 28.4 3.4 66 195-260 11-91 (121)
3 1rw1_A Conserved hypothetical 30.6 40 0.0014 25.9 3.3 62 195-260 6-84 (114)
4 3f0i_A Arsenate reductase; str 29.7 26 0.00088 27.6 2.1 55 195-249 10-71 (119)
5 3fz4_A Putative arsenate reduc 24.4 28 0.00097 27.4 1.5 55 195-249 9-69 (120)
6 1s3c_A Arsenate reductase; ARS 23.5 39 0.0013 27.5 2.1 66 195-260 8-87 (141)
7 3gkx_A Putative ARSC family re 23.3 33 0.0011 27.1 1.6 55 195-249 10-70 (120)
8 1lgh_A LH II, B800/850, light 21.2 51 0.0017 24.4 2.2 21 298-318 20-40 (56)
9 2yre_A F-box only protein 30; 20.8 23 0.0008 28.7 0.3 28 135-162 28-64 (100)
10 3l78_A Regulatory protein SPX; 20.1 42 0.0015 26.2 1.7 54 195-249 6-66 (120)
No 1
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=65.53 E-value=2.4 Score=32.62 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=19.3
Q ss_pred HhHHHHHHHHcCCC--CCCCCCCCCcceeeeeeeecC
Q 038515 121 VDDLGKAMKQRGID--LPRPNETCDVVYCYCGIRLHP 155 (320)
Q Consensus 121 v~~l~rAL~~rGi~--Lp~PN~tCDvv~CyCGIRLh~ 155 (320)
....+|-+|+-=-. -=|..-.-..=||||||||.+
T Consensus 40 ~a~FGK~ir~~FP~l~trRLg~rG~skyhy~Girlk~ 76 (76)
T 1dp7_P 40 AASFGKLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKA 76 (76)
T ss_dssp HHHHHHHHHHHSTTCEEEEESSTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHCCCceeeeccccCCccEEEEeeEeCC
Confidence 34566666553211 111122344569999999974
No 2
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=42.61 E-value=19 Score=28.44 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=37.9
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhh-hH--hhhcccchhhh--------hHHHHHHHHH
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGL-TW--LLEKNRTAYIH--------TVSAVIRAMM 259 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGL-tW--LL~rN~T~Yi~--------tvtAVlrAlM 259 (320)
+..+|+.|-.|+.+|+.++-.-.. ...-+..+..+=.+.+|+ .- |+.++.+.|.. +....|.+|.
T Consensus 11 ~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~~l~n~~~~~~k~l~l~~~~ls~~~~~~lm~ 90 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGFSDARQLMRTKEDLYKTLNLDDRGLTQDQLLQAMA 90 (121)
T ss_dssp CCTTCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTTCSSGGGGBCTTSHHHHHTTTTCTTCCHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcCCcCHHHHhcCCChhhhhcCcccccCCHHHHHHHHH
Confidence 568999999999999986533111 000011122222344554 33 88999988865 3455555544
Q ss_pred h
Q 038515 260 L 260 (320)
Q Consensus 260 ~ 260 (320)
.
T Consensus 91 ~ 91 (121)
T 3rdw_A 91 D 91 (121)
T ss_dssp H
T ss_pred h
Confidence 3
No 3
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=30.64 E-value=40 Score=25.92 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=38.6
Q ss_pred CCCchhHHHHHHHHhhcccCCcc-----hhh---hhhhcccccchhhhhhhHhhhcccchhhh---------hHHHHHHH
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTS-----KAE---DRTTKMHNKDCQLMGLTWLLEKNRTAYIH---------TVSAVIRA 257 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~-----k~~---dr~~k~~~rDCqLMGLtWLL~rN~T~Yi~---------tvtAVlrA 257 (320)
+..+|+.|-.++.+|+.++-.-. +.. +.-+.+. +-+|+-=|+.++-+.|.. +....|.+
T Consensus 6 ~~~~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~----~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~~~~ 81 (114)
T 1rw1_A 6 GIKACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWC----AEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIEL 81 (114)
T ss_dssp ECSSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHH----HHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHH----HhCChHHhccCCcHhHHhcCccccccCCHHHHHHH
Confidence 35799999999999997643311 110 1111122 246878889999999876 34455555
Q ss_pred HHh
Q 038515 258 MML 260 (320)
Q Consensus 258 lM~ 260 (320)
|+.
T Consensus 82 l~~ 84 (114)
T 1rw1_A 82 MLA 84 (114)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
No 4
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=29.73 E-value=26 Score=27.64 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=32.8
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhhh---Hhhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGLT---WLLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGLt---WLL~rN~T~Yi~ 249 (320)
+..+|++|-.++.+|+.++-.-.. ..-=+......=.+.+|+. =|+.++.+.|..
T Consensus 10 ~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~~~g~~~~~~l~n~~~~~~k~ 71 (119)
T 3f0i_A 10 HNPKCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQQLGLNEVRAMMRCKEELYKE 71 (119)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHHHHHTCSSGGGGBCTTSHHHHH
T ss_pred ECCCChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHHHHcCCccHHHHhcCCCchhhh
Confidence 568999999999999986432111 0000111222234556654 378888888865
No 5
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=24.43 E-value=28 Score=27.45 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhhhH--hhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGLTW--LLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGLtW--LL~rN~T~Yi~ 249 (320)
+..+|+.|-.|+.+|+.++-.-.. ...=+..+...=.+.+|+.| |+.++.|.|..
T Consensus 9 ~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l~n~~~~~~k~ 69 (120)
T 3fz4_A 9 EYPKCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLENSGLELKKFFNTSGQSYRA 69 (120)
T ss_dssp ECSSCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHHHSCCCGGGGBCTTSHHHHH
T ss_pred eCCCChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHHHcCCCHHHHhCCCCcchhh
Confidence 467999999999999976432110 00001111222234555444 88899888864
No 6
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=23.45 E-value=39 Score=27.52 Aligned_cols=66 Identities=20% Similarity=0.138 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhh--hHhhhcccchhhh--------hHHHHHHHHHh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGL--TWLLEKNRTAYIH--------TVSAVIRAMML 260 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGL--tWLL~rN~T~Yi~--------tvtAVlrAlM~ 260 (320)
+..+|+.|-.++.+|+.++-.-.. ...-+.....+=-+.+|+ -=|+.++.|.|.. +....|.+|..
T Consensus 8 ~~p~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~~g~p~~~l~n~~~~~yk~l~l~~~~ls~~~~~~lm~~ 87 (141)
T 1s3c_A 8 HNPASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGISVRALLRKNVEPYEQLGLAEDKFTDDQLIDFMLQ 87 (141)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHHTSCHHHHBCSSSHHHHHTTTTSSCCCHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHhcccCCCHHHhccCCchhHHhcCCccccCCHHHHHHHHHh
Confidence 467999999999999976432110 000001111111123343 4578888888874 45555555543
No 7
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=23.30 E-value=33 Score=27.09 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=33.2
Q ss_pred CCCchhHHHHHHHHhhcccCCcch----hhhhhhcccccchhhhhhhH--hhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSK----AEDRTTKMHNKDCQLMGLTW--LLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k----~~dr~~k~~~rDCqLMGLtW--LL~rN~T~Yi~ 249 (320)
+..+|+.|-.++.+|+.++-.-.. ...-+.....+=.+.+|+.| |+.++.|.|..
T Consensus 10 ~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g~~~~~l~n~~~~~~k~ 70 (120)
T 3gkx_A 10 QYPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSGLPVKKFFNTSGVVYKE 70 (120)
T ss_dssp ECTTCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHHHHTSCGGGGBCTTSHHHHH
T ss_pred ECCCChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHHHcCCCHHHeEeCCCchhhh
Confidence 467999999999999976432110 00001112222345566544 88888888854
No 8
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=21.16 E-value=51 Score=24.42 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHhhcc
Q 038515 298 PFYLSFVSLWLLFMSFAVSSS 318 (320)
Q Consensus 298 p~~~~~l~~~~l~~~~~~~s~ 318 (320)
|.++..+.+.-+.+||+++|.
T Consensus 20 ~~l~~~v~vlAllIH~~lLs~ 40 (56)
T 1lgh_A 20 PVIWIVATVVAIAVHAAVLAA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 455666666688899999875
No 9
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.77 E-value=23 Score=28.72 Aligned_cols=28 Identities=39% Similarity=0.918 Sum_probs=21.9
Q ss_pred CCCCCCCCCccee--eeeeeec-------CCCCCccc
Q 038515 135 LPRPNETCDVVYC--YCGIRLH-------PLTCPEAF 162 (320)
Q Consensus 135 Lp~PN~tCDvv~C--yCGIRLh-------~l~Cp~af 162 (320)
=|.++.+|+++.| .||.++| .+.||++-
T Consensus 28 ~~~~~~~C~~i~CP~~Cga~i~rckL~EH~~~CP~a~ 64 (100)
T 2yre_A 28 RPEPGISCDLIGCPLVCGAVFHSCKADEHRLLCPFER 64 (100)
T ss_dssp CCCTTTCCCEEECTTCCSCEEEHHHHHHHHHHCSSSE
T ss_pred CCCCCCeeeeeeCCcccCCeeehhhHHHHHhhccccc
Confidence 3567899999999 6999887 44688765
No 10
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=20.07 E-value=42 Score=26.21 Aligned_cols=54 Identities=9% Similarity=0.041 Sum_probs=31.4
Q ss_pred CCCchhHHHHHHHHhhcccCCcc-----hhhhhhhcccccchhhhhhhH--hhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTS-----KAEDRTTKMHNKDCQLMGLTW--LLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~-----k~~dr~~k~~~rDCqLMGLtW--LL~rN~T~Yi~ 249 (320)
+..+|+.|-.++.+|+.++-.-. +... +......=.+.+|+.| |+.++-+.|..
T Consensus 6 ~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~-~~~el~~~l~~~~~~~~~l~n~~~~~~k~ 66 (120)
T 3l78_A 6 LSPSCTSCRKARAWLNRHDVVFQEHNIMTSPL-SRDELLKILSYTENGTEDIISTRSKVFQK 66 (120)
T ss_dssp ECSSCHHHHHHHHHHHHTTCCEEEEETTTSCC-CHHHHHHHHHHCSSTHHHHBCTTCHHHHH
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCC-cHHHHHHHHhhcCCCHHHhhcCCcHHHHH
Confidence 35799999999999997643211 0000 0111111123446666 88888888854
Done!