Query 038515
Match_columns 320
No_of_seqs 41 out of 43
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 20:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038515.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038515hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j9ba_ c.47.1.12 (A:) Arsenat 69.4 1 7.6E-05 34.9 2.2 55 195-249 6-66 (138)
2 d1dp7p_ a.4.5.20 (P:) Class II 46.6 3.5 0.00026 29.9 1.4 16 139-154 60-75 (76)
3 d1rw1a_ c.47.1.12 (A:) Hypothe 46.3 3.8 0.00028 30.1 1.7 19 195-213 6-24 (114)
4 d1z3ea1 c.47.1.12 (A:1-114) Re 44.4 4.2 0.00031 30.0 1.6 20 195-214 6-25 (114)
5 d2vv5a2 d.58.43.1 (A:180-280) 24.6 18 0.0013 25.0 2.1 18 123-140 77-94 (101)
6 d1kt7a_ b.60.1.1 (A:) Retinol 15.8 22 0.0016 26.4 1.0 26 236-261 133-158 (175)
7 d1w6ga3 d.17.2.1 (A:97-211) Co 15.1 20 0.0014 27.2 0.5 26 110-135 2-33 (115)
8 d3d9ta1 g.52.1.1 (A:260-346) 2 12.2 31 0.0022 24.7 0.9 18 139-156 33-51 (87)
9 d2i3ha1 g.52.1.1 (A:78-167) BI 11.2 35 0.0025 24.6 0.9 18 139-156 39-57 (90)
10 d1jd5a_ g.52.1.1 (A:) BIR doma 9.4 44 0.0032 24.6 0.9 16 140-155 43-59 (105)
No 1
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=69.38 E-value=1 Score=34.92 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=34.8
Q ss_pred CCCchhHHHHHHHHhhcccCCcchhhhh----hhcccccchhhhhhhH--hhhcccchhhh
Q 038515 195 GLGGCNKCLNSLYQLNKKTFNTSKAEDR----TTKMHNKDCQLMGLTW--LLEKNRTAYIH 249 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~n~~k~~dr----~~k~~~rDCqLMGLtW--LL~rN~T~Yi~ 249 (320)
+.++||+|-.||.+|+.++-.-..-.=+ +..+-.+=++.+|+-| |+.++-+.|..
T Consensus 6 ~~p~Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~ll~~lg~~~~~Li~~~~~~~k~ 66 (138)
T d1j9ba_ 6 HNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGISVRALLRKNVEPYEQ 66 (138)
T ss_dssp CCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHHTSCHHHHBCCSSHHHHH
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEeeccCCCCHHHHHHHHHHccCCHHHHHHccCchhhh
Confidence 5678999999999999765331111100 1122333366778877 88888888764
No 2
>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.63 E-value=3.5 Score=29.88 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=11.9
Q ss_pred CCCCCcceeeeeeeec
Q 038515 139 NETCDVVYCYCGIRLH 154 (320)
Q Consensus 139 N~tCDvv~CyCGIRLh 154 (320)
+..=..-|+|||||++
T Consensus 60 g~rG~skYhY~Gir~k 75 (76)
T d1dp7p_ 60 GTRGNSKYHYYGLRIK 75 (76)
T ss_dssp SSTTCCEEEEEEEEEC
T ss_pred CCCCCceEEEeeeEec
Confidence 3344457999999986
No 3
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=46.28 E-value=3.8 Score=30.11 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=16.6
Q ss_pred CCCchhHHHHHHHHhhccc
Q 038515 195 GLGGCNKCLNSLYQLNKKT 213 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~ 213 (320)
|...||+|-.|+.+|+.++
T Consensus 6 ~~p~Cs~srka~~~L~~~~ 24 (114)
T d1rw1a_ 6 GIKACDTMKKARTWLDEHK 24 (114)
T ss_dssp ECSSCHHHHHHHHHHHHTT
T ss_pred ECCCChHHHHHHHHHHHcC
Confidence 4679999999999999764
No 4
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=44.36 E-value=4.2 Score=30.04 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=16.9
Q ss_pred CCCchhHHHHHHHHhhcccC
Q 038515 195 GLGGCNKCLNSLYQLNKKTF 214 (320)
Q Consensus 195 gl~GCSkCL~aL~~l~~~~~ 214 (320)
|..+||+|-.|+.+|+.++-
T Consensus 6 ~~~~C~~~rka~~~L~~~~i 25 (114)
T d1z3ea1 6 TSPSCTSCRKARAWLEEHEI 25 (114)
T ss_dssp ECTTCHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHHCCC
Confidence 46789999999999997644
No 5
>d2vv5a2 d.58.43.1 (A:180-280) Mechanosensitive channel protein MscS (YggB), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.57 E-value=18 Score=25.02 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=14.5
Q ss_pred HHHHHHHHcCCCCCCCCC
Q 038515 123 DLGKAMKQRGIDLPRPNE 140 (320)
Q Consensus 123 ~l~rAL~~rGi~Lp~PN~ 140 (320)
.+.++|+++||++|-|-.
T Consensus 77 ~I~~~l~~~gI~ip~P~~ 94 (101)
T d2vv5a2 77 RIKREFDAAGISFPYPQM 94 (101)
T ss_dssp HHHHHHHHHTCCCCCCEE
T ss_pred HHHHHHHHcCCcCCCCcE
Confidence 355699999999999854
No 6
>d1kt7a_ b.60.1.1 (A:) Retinol binding protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.83 E-value=22 Score=26.43 Aligned_cols=26 Identities=8% Similarity=0.330 Sum_probs=21.4
Q ss_pred hhHhhhcccchhhhhHHHHHHHHHhh
Q 038515 236 LTWLLEKNRTAYIHTVSAVIRAMMLS 261 (320)
Q Consensus 236 LtWLL~rN~T~Yi~tvtAVlrAlM~s 261 (320)
..|+|+|+++..-+.+...++-++..
T Consensus 133 ~~wilsR~~~~~~~~~~~~v~~~~~~ 158 (175)
T d1kt7a_ 133 YSFVFARDPSGFSPEVQKIVRQRQEE 158 (175)
T ss_dssp EEEEEESSTTCCCHHHHHHHHHHHHH
T ss_pred eEEEEEccCCCCcHHHHHHHHHHHHh
Confidence 46999999998888888887777654
No 7
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2 {Arthrobacter globiformis [TaxId: 1665]}
Probab=15.09 E-value=20 Score=27.24 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=21.1
Q ss_pred CCCCCCChhHHHhHH------HHHHHHcCCCC
Q 038515 110 LPLLPDDSETCVDDL------GKAMKQRGIDL 135 (320)
Q Consensus 110 mPl~PDDSe~Cv~~l------~rAL~~rGi~L 135 (320)
+|++.||-+.|...+ ++||+.|||++
T Consensus 2 ~Pil~eE~~~~e~~~~~dp~~~~al~kRGid~ 33 (115)
T d1w6ga3 2 LPVLEEEFEVVEQLLATDERWLKALAARNLDV 33 (115)
T ss_dssp CCCCHHHHHHHHHHHTTCHHHHHHHHHTTCCG
T ss_pred CCccHHHHHHHHHHHHhCHHHHHHHHHcCCCH
Confidence 788889998887654 56999999954
No 8
>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.24 E-value=31 Score=24.71 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.0
Q ss_pred CCCCCccee-eeeeeecCC
Q 038515 139 NETCDVVYC-YCGIRLHPL 156 (320)
Q Consensus 139 N~tCDvv~C-yCGIRLh~l 156 (320)
.+.-|.|.| |||+.|.-.
T Consensus 33 tg~~D~v~C~~C~~~l~~W 51 (87)
T d3d9ta1 33 VGRNDDVKCFCCDGGLRCW 51 (87)
T ss_dssp CSSTTCEEETTTCCEEECC
T ss_pred CCCCCEEEeCcCCCEecCc
Confidence 346799999 799999754
No 9
>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.21 E-value=35 Score=24.56 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=13.8
Q ss_pred CCCCCccee-eeeeeecCC
Q 038515 139 NETCDVVYC-YCGIRLHPL 156 (320)
Q Consensus 139 N~tCDvv~C-yCGIRLh~l 156 (320)
.+.-|.|.| |||++|...
T Consensus 39 tg~~D~v~C~~C~~~l~~W 57 (90)
T d2i3ha1 39 TGHQDKVRCFFCYGGLQSW 57 (90)
T ss_dssp CSSTTCEEETTTCCEEECC
T ss_pred CCCCCEEEeccCCCEeCCC
Confidence 345699999 799999744
No 10
>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.42 E-value=44 Score=24.63 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=12.6
Q ss_pred CCCCccee-eeeeeecC
Q 038515 140 ETCDVVYC-YCGIRLHP 155 (320)
Q Consensus 140 ~tCDvv~C-yCGIRLh~ 155 (320)
+.-|.|.| |||++|..
T Consensus 43 g~~D~v~Cf~C~~~l~~ 59 (105)
T d1jd5a_ 43 GVGDRVRCFSCGGGLMD 59 (105)
T ss_dssp SSTTCEEETTTCCEEEC
T ss_pred CCCCEEEeCccCCCccC
Confidence 45688888 79999874
Done!