BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038516
(708 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GCF|A Chain A, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|B Chain B, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|C Chain C, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|D Chain D, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|E Chain E, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|F Chain F, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|G Chain G, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|H Chain H, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|I Chain I, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|J Chain J, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|K Chain K, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|L Chain L, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|M Chain M, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|N Chain N, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
pdb|3GCF|O Chain O, Terminal Oxygenase Of Carbazole 1,9a-Dioxygenase From
Nocardioides Aromaticivorans Ic177
Length = 394
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 36 LTTNHIPINAQSPYMYNNVLSM-YGRCGSIRDARQVFDE 73
T HI ++ SP++ N L+ YG + RDA QV+DE
Sbjct: 185 FDTTHIFMHRNSPWVSGNRLAFPYGFVPADRDAMQVYDE 223
>pdb|4AGT|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AGT|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
Fuc1-6glcnac.
pdb|4AHA|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHA|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Fucosylated
Monosaccharides (fuc1-2gal, Fuc1-3glcnac, Fuc1-4glcnac
And Fuc1-6glcnac)
pdb|4AHB|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYS 220
+ D KEG +L GA+ G+G+ T F Y+
Sbjct: 141 WNGDGWKEGTNLGGALPGTGIGATSFRYT 169
>pdb|4AHB|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose.
pdb|4AHB|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYS 220
+ D KEG +L GA+ G+G+ T F Y+
Sbjct: 141 WNGDGWKEGTNLGGALPGTGIGATSFRYT 169
>pdb|4AH4|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH4|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Bga
Oligosaccharide.
pdb|4AH5|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide.
pdb|4AH5|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Lewisy
Tetrasaccharide
Length = 315
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYS 220
+ D KEG +L GA+ G+G+ T F Y+
Sbjct: 141 WNGDGWKEGTNLGGALPGTGIGATSFRYT 169
>pdb|4AGI|A Chain A, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|B Chain B, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AGI|D Chain D, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With Seleno
Fucoside.
pdb|4AHB|C Chain C, Crystal Structure Of Fucose Binding Lectin From
Aspergillus Fumigatus (afl) In Complex With
L-galactopyranose
Length = 315
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYS 220
+ D KEG +L GA+ G+G+ T F Y+
Sbjct: 141 WNGDGWKEGTNLGGALPGTGIGATSFRYT 169
>pdb|3KCC|A Chain A, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
pdb|3KCC|B Chain B, Crystal Structure Of D138l Mutant Of Catabolite Gene
Activator Protein
Length = 260
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 650 GSM-LGK---EPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFGK 705
GSM LGK +P L W + ++H + S + + A+ + ++G++ L+ DE GK
Sbjct: 49 GSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGK 108
Query: 706 EVI 708
E+I
Sbjct: 109 EMI 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,423,268
Number of Sequences: 62578
Number of extensions: 813082
Number of successful extensions: 1670
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 17
length of query: 708
length of database: 14,973,337
effective HSP length: 106
effective length of query: 602
effective length of database: 8,340,069
effective search space: 5020721538
effective search space used: 5020721538
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)