Query 038516
Match_columns 708
No_of_seqs 633 out of 4037
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 11:52:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-103 2E-108 883.8 79.7 686 6-700 83-769 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3.5E-78 7.5E-83 661.4 59.4 519 179-699 85-605 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4E-77 8.6E-82 669.0 65.5 574 76-656 48-624 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.4E-67 5.2E-72 576.1 51.1 520 46-581 368-906 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 5.2E-67 1.1E-71 573.2 53.7 474 76-553 84-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 5E-65 1.1E-69 557.9 51.6 529 9-556 370-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.5E-36 1.2E-40 345.9 66.5 622 10-648 228-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-35 3.3E-40 342.2 68.1 623 9-652 193-867 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-26 2.9E-31 266.9 66.1 616 11-650 30-739 (1157)
10 PRK11447 cellulose synthase su 100.0 8E-26 1.7E-30 260.5 56.6 589 51-652 31-701 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.1E-22 2.3E-27 223.5 62.3 564 60-652 56-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 6.7E-22 1.5E-26 217.1 57.6 602 20-653 55-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.3E-21 7.2E-26 187.2 32.9 443 184-640 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 7E-21 1.5E-25 184.9 34.5 424 219-653 51-487 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1E-18 2.2E-23 189.5 41.1 250 397-651 307-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 1.4E-17 2.9E-22 171.2 45.8 578 64-654 146-801 (1018)
17 PRK10049 pgaA outer membrane p 99.8 2.5E-17 5.4E-22 181.8 41.8 390 223-651 22-456 (765)
18 PRK11788 tetratricopeptide rep 99.8 6.1E-19 1.3E-23 181.8 26.9 299 363-664 45-360 (389)
19 PRK15174 Vi polysaccharide exp 99.8 1.6E-17 3.4E-22 179.3 37.6 351 263-622 17-386 (656)
20 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-16 3.9E-21 172.0 41.4 439 184-650 130-596 (615)
21 PRK11788 tetratricopeptide rep 99.8 4.5E-18 9.7E-23 175.4 26.5 290 190-554 44-352 (389)
22 KOG2002 TPR-containing nuclear 99.8 5.1E-15 1.1E-19 152.5 46.5 367 280-651 268-675 (1018)
23 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.5E-21 172.7 36.2 352 293-653 16-383 (656)
24 KOG4422 Uncharacterized conser 99.8 2.8E-15 6E-20 140.2 39.6 411 16-515 122-591 (625)
25 PRK14574 hmsH outer membrane p 99.8 1.5E-15 3.3E-20 164.0 41.5 436 159-623 43-519 (822)
26 PRK10049 pgaA outer membrane p 99.8 3.3E-16 7.2E-21 172.9 36.6 402 148-624 13-463 (765)
27 KOG0495 HAT repeat protein [RN 99.8 6.4E-13 1.4E-17 131.1 51.9 611 21-668 263-895 (913)
28 KOG2076 RNA polymerase III tra 99.8 3.8E-13 8.2E-18 138.1 48.3 619 16-647 146-891 (895)
29 KOG4422 Uncharacterized conser 99.7 6E-14 1.3E-18 131.4 37.4 441 79-581 116-587 (625)
30 PRK14574 hmsH outer membrane p 99.7 1.9E-13 4.2E-18 147.9 44.4 435 124-589 43-518 (822)
31 KOG2003 TPR repeat-containing 99.7 3.5E-14 7.7E-19 133.7 32.2 203 433-638 504-710 (840)
32 KOG4318 Bicoid mRNA stability 99.7 4.7E-13 1E-17 136.6 42.3 589 30-653 11-810 (1088)
33 KOG2076 RNA polymerase III tra 99.7 1E-12 2.2E-17 135.1 42.5 554 93-651 153-849 (895)
34 KOG0495 HAT repeat protein [RN 99.7 5.5E-11 1.2E-15 117.8 50.6 511 98-630 364-893 (913)
35 KOG2003 TPR repeat-containing 99.6 1.3E-13 2.8E-18 129.9 25.6 454 225-692 210-723 (840)
36 KOG4318 Bicoid mRNA stability 99.6 2.9E-12 6.2E-17 131.0 34.8 522 101-662 11-604 (1088)
37 PF13429 TPR_15: Tetratricopep 99.6 1.9E-15 4.1E-20 147.1 10.5 215 431-649 56-275 (280)
38 KOG0547 Translocase of outer m 99.6 2.4E-12 5.3E-17 123.0 30.2 413 187-649 121-564 (606)
39 KOG1155 Anaphase-promoting com 99.6 3.3E-12 7.3E-17 121.3 29.3 214 453-696 329-555 (559)
40 KOG1126 DNA-binding cell divis 99.6 5.8E-13 1.3E-17 132.6 22.8 273 369-650 335-619 (638)
41 KOG1155 Anaphase-promoting com 99.5 8E-11 1.7E-15 112.1 33.1 285 394-702 237-527 (559)
42 KOG1915 Cell cycle control pro 99.5 5.1E-10 1.1E-14 106.9 38.4 482 159-649 82-623 (677)
43 COG2956 Predicted N-acetylgluc 99.5 2E-11 4.2E-16 110.9 25.7 182 488-671 183-367 (389)
44 KOG1126 DNA-binding cell divis 99.5 1.2E-12 2.7E-17 130.3 19.8 280 333-623 334-626 (638)
45 PRK10747 putative protoheme IX 99.5 2E-11 4.4E-16 124.4 28.8 275 366-649 97-388 (398)
46 KOG1173 Anaphase-promoting com 99.5 1.2E-10 2.7E-15 113.8 31.9 197 451-650 309-517 (611)
47 KOG1915 Cell cycle control pro 99.5 3.2E-10 6.9E-15 108.3 33.8 422 262-697 84-542 (677)
48 PRK10747 putative protoheme IX 99.5 2E-11 4.3E-16 124.5 26.8 255 329-618 129-391 (398)
49 TIGR00540 hemY_coli hemY prote 99.5 3.2E-11 7E-16 123.7 28.0 249 396-647 96-360 (409)
50 KOG0547 Translocase of outer m 99.5 1.1E-10 2.5E-15 111.8 28.3 212 465-706 337-561 (606)
51 TIGR00540 hemY_coli hemY prote 99.5 1.1E-10 2.3E-15 119.9 30.1 140 471-648 246-396 (409)
52 PF13429 TPR_15: Tetratricopep 99.4 4.2E-13 9E-18 130.7 11.1 252 358-616 13-276 (280)
53 TIGR02521 type_IV_pilW type IV 99.4 4.7E-11 1E-15 113.6 23.5 198 452-650 29-231 (234)
54 KOG2047 mRNA splicing factor [ 99.4 3.9E-08 8.5E-13 97.9 41.4 538 50-643 104-715 (835)
55 COG3071 HemY Uncharacterized e 99.4 9E-10 1.9E-14 103.6 25.8 286 194-514 97-390 (400)
56 COG3071 HemY Uncharacterized e 99.4 1.5E-09 3.3E-14 102.1 27.2 285 295-615 97-388 (400)
57 KOG1174 Anaphase-promoting com 99.3 1.2E-08 2.7E-13 96.0 32.9 274 350-628 229-511 (564)
58 KOG2047 mRNA splicing factor [ 99.3 4E-08 8.6E-13 97.9 37.8 530 151-698 103-726 (835)
59 KOG4162 Predicted calmodulin-b 99.3 1.3E-08 2.8E-13 103.7 34.0 477 96-652 243-784 (799)
60 KOG0624 dsRNA-activated protei 99.3 5.7E-09 1.2E-13 95.7 27.8 229 430-706 166-403 (504)
61 COG3063 PilF Tfp pilus assembl 99.3 4E-10 8.7E-15 97.9 18.6 163 487-653 37-204 (250)
62 KOG1173 Anaphase-promoting com 99.3 4.4E-08 9.6E-13 96.3 34.7 282 349-634 240-535 (611)
63 COG2956 Predicted N-acetylgluc 99.3 2.8E-09 6E-14 97.2 24.5 284 295-615 48-345 (389)
64 KOG0985 Vesicle coat protein c 99.3 1.9E-07 4.2E-12 97.5 40.3 550 48-650 606-1248(1666)
65 KOG2376 Signal recognition par 99.3 6.2E-08 1.3E-12 95.8 34.9 181 459-646 314-515 (652)
66 KOG3785 Uncharacterized conser 99.3 1.4E-08 3.1E-13 93.6 28.5 366 156-543 63-451 (557)
67 KOG1840 Kinesin light chain [C 99.3 1.3E-09 2.7E-14 110.4 23.5 230 420-649 200-477 (508)
68 PRK11189 lipoprotein NlpI; Pro 99.3 1.7E-09 3.7E-14 105.3 23.7 213 433-653 40-267 (296)
69 KOG1129 TPR repeat-containing 99.2 3.8E-10 8.2E-15 102.6 16.6 227 388-653 227-460 (478)
70 PRK12370 invasion protein regu 99.2 4E-09 8.7E-14 112.6 26.5 242 399-652 276-536 (553)
71 KOG1174 Anaphase-promoting com 99.2 1.4E-07 3E-12 89.1 32.8 405 251-698 97-521 (564)
72 PF13041 PPR_2: PPR repeat fam 99.2 5.3E-11 1.2E-15 80.4 6.9 50 483-532 1-50 (50)
73 PF13041 PPR_2: PPR repeat fam 99.2 3.3E-11 7.2E-16 81.4 5.7 50 77-127 1-50 (50)
74 TIGR02521 type_IV_pilW type IV 99.2 5.8E-09 1.3E-13 99.1 23.2 165 484-651 30-198 (234)
75 PRK12370 invasion protein regu 99.2 4.8E-09 1E-13 112.0 23.8 212 433-651 275-502 (553)
76 KOG1156 N-terminal acetyltrans 99.2 4.9E-06 1.1E-10 83.7 42.4 410 161-581 52-508 (700)
77 KOG4162 Predicted calmodulin-b 99.1 4.9E-07 1.1E-11 92.5 34.7 445 103-623 311-789 (799)
78 KOG0985 Vesicle coat protein c 99.1 1.1E-05 2.5E-10 84.9 44.3 473 12-507 609-1216(1666)
79 KOG3616 Selective LIM binding 99.1 4.3E-06 9.2E-11 84.9 39.2 437 156-652 563-1025(1636)
80 PRK11189 lipoprotein NlpI; Pro 99.1 5.6E-08 1.2E-12 94.8 25.2 230 396-632 38-281 (296)
81 KOG1156 N-terminal acetyltrans 99.1 1.9E-06 4E-11 86.6 35.1 122 523-646 374-506 (700)
82 KOG1129 TPR repeat-containing 99.1 1.4E-09 3.1E-14 99.0 12.2 235 357-628 227-469 (478)
83 KOG3785 Uncharacterized conser 99.1 2.2E-06 4.9E-11 79.4 32.0 442 160-620 32-493 (557)
84 KOG1840 Kinesin light chain [C 99.1 1.4E-07 3.1E-12 95.7 26.8 160 457-616 286-478 (508)
85 KOG3616 Selective LIM binding 99.1 3E-05 6.4E-10 79.0 42.2 82 561-643 1298-1383(1636)
86 KOG3617 WD40 and TPR repeat-co 99.0 5.1E-06 1.1E-10 85.5 36.7 539 48-651 726-1359(1416)
87 KOG2376 Signal recognition par 99.0 2.6E-06 5.7E-11 84.6 33.1 248 288-545 230-516 (652)
88 KOG1125 TPR repeat-containing 99.0 1.7E-08 3.6E-13 99.7 16.4 213 432-650 298-526 (579)
89 KOG0548 Molecular co-chaperone 99.0 9.5E-07 2.1E-11 86.9 28.2 409 224-651 10-455 (539)
90 PF04733 Coatomer_E: Coatomer 99.0 2.7E-08 5.8E-13 95.3 16.9 192 451-651 63-265 (290)
91 KOG3617 WD40 and TPR repeat-co 99.0 1E-05 2.2E-10 83.3 35.4 222 19-278 738-994 (1416)
92 KOG4340 Uncharacterized conser 99.0 2.6E-06 5.6E-11 77.2 27.4 404 218-650 12-442 (459)
93 PF12569 NARP1: NMDA receptor- 99.0 2.7E-06 5.9E-11 87.8 31.7 176 402-581 129-331 (517)
94 COG3063 PilF Tfp pilus assembl 98.9 2.6E-07 5.6E-12 80.8 20.1 190 459-650 40-235 (250)
95 PF12569 NARP1: NMDA receptor- 98.9 1.1E-06 2.3E-11 90.7 26.1 282 361-648 12-331 (517)
96 KOG1127 TPR repeat-containing 98.9 2.6E-05 5.7E-10 82.4 35.3 373 27-409 474-909 (1238)
97 PF04733 Coatomer_E: Coatomer 98.9 2E-07 4.4E-12 89.3 18.9 157 461-623 109-271 (290)
98 KOG0548 Molecular co-chaperone 98.9 3.3E-06 7.2E-11 83.2 26.6 431 189-646 10-484 (539)
99 PRK15359 type III secretion sy 98.9 1.1E-07 2.4E-12 81.3 14.9 94 558-651 27-121 (144)
100 cd05804 StaR_like StaR_like; a 98.8 5.6E-06 1.2E-10 84.2 29.7 257 392-651 51-336 (355)
101 PRK10370 formate-dependent nit 98.8 5.9E-07 1.3E-11 81.3 18.2 149 492-653 23-175 (198)
102 KOG1127 TPR repeat-containing 98.8 0.00013 2.9E-09 77.3 37.2 178 62-244 472-658 (1238)
103 TIGR03302 OM_YfiO outer membra 98.8 4.9E-07 1.1E-11 85.7 18.7 179 453-651 32-232 (235)
104 PRK15359 type III secretion sy 98.8 1.8E-07 4E-12 79.9 13.6 124 505-634 13-138 (144)
105 PRK15363 pathogenicity island 98.8 1.7E-07 3.6E-12 78.2 12.7 118 555-695 35-153 (157)
106 PRK04841 transcriptional regul 98.6 0.0001 2.2E-09 85.3 35.1 363 258-621 348-764 (903)
107 PRK04841 transcriptional regul 98.6 2.8E-05 6.1E-10 89.9 30.4 362 287-652 346-761 (903)
108 KOG1128 Uncharacterized conser 98.6 2.6E-06 5.6E-11 86.9 18.2 190 449-652 393-583 (777)
109 KOG1070 rRNA processing protei 98.6 6.4E-06 1.4E-10 89.8 21.9 201 451-654 1455-1666(1710)
110 cd05804 StaR_like StaR_like; a 98.6 9.8E-05 2.1E-09 75.1 30.3 190 428-618 123-337 (355)
111 KOG1128 Uncharacterized conser 98.6 2.6E-05 5.6E-10 79.9 24.9 232 349-597 394-632 (777)
112 COG5010 TadD Flp pilus assembl 98.6 5.8E-06 1.3E-10 74.2 17.9 156 489-646 70-226 (257)
113 COG4783 Putative Zn-dependent 98.6 1.3E-05 2.9E-10 78.3 21.7 141 491-652 312-455 (484)
114 TIGR02552 LcrH_SycD type III s 98.6 1.4E-06 3.1E-11 74.2 13.7 107 543-651 6-114 (135)
115 KOG0624 dsRNA-activated protei 98.6 0.00019 4.2E-09 66.7 27.6 324 257-626 44-379 (504)
116 PLN02789 farnesyltranstransfer 98.6 9.3E-06 2E-10 79.0 20.4 183 464-650 47-249 (320)
117 PRK15179 Vi polysaccharide bio 98.6 1E-05 2.3E-10 86.9 22.2 139 483-625 84-225 (694)
118 COG5010 TadD Flp pilus assembl 98.6 5.1E-06 1.1E-10 74.6 16.6 135 517-652 63-198 (257)
119 PRK10370 formate-dependent nit 98.5 1.2E-05 2.7E-10 72.7 18.7 155 461-626 23-182 (198)
120 TIGR03302 OM_YfiO outer membra 98.5 6.5E-06 1.4E-10 78.0 17.7 184 417-620 31-235 (235)
121 PLN02789 farnesyltranstransfer 98.5 3.9E-05 8.4E-10 74.8 23.2 198 434-635 52-268 (320)
122 COG4783 Putative Zn-dependent 98.5 0.00011 2.4E-09 72.1 25.3 178 468-650 251-436 (484)
123 PRK15179 Vi polysaccharide bio 98.5 4.3E-05 9.3E-10 82.3 23.7 130 449-581 81-214 (694)
124 PF12854 PPR_1: PPR repeat 98.4 2.4E-07 5.2E-12 55.8 3.5 33 145-177 2-34 (34)
125 PF12854 PPR_1: PPR repeat 98.4 2.8E-07 6.1E-12 55.5 3.5 33 39-75 2-34 (34)
126 KOG1125 TPR repeat-containing 98.4 2.4E-05 5.2E-10 78.0 18.4 214 329-547 296-525 (579)
127 KOG3081 Vesicle coat complex C 98.4 0.00018 4E-09 64.7 21.6 115 461-581 115-233 (299)
128 KOG4340 Uncharacterized conser 98.4 1.3E-05 2.8E-10 72.8 14.5 197 457-659 13-215 (459)
129 KOG0550 Molecular chaperone (D 98.4 1.7E-05 3.6E-10 75.6 15.4 166 462-651 177-350 (486)
130 KOG0553 TPR repeat-containing 98.4 3.4E-06 7.4E-11 77.2 10.4 92 530-623 91-184 (304)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 9.2E-06 2E-10 80.6 14.3 123 523-649 172-295 (395)
132 KOG2053 Mitochondrial inherita 98.3 0.0059 1.3E-07 64.8 34.2 65 591-655 439-506 (932)
133 KOG3081 Vesicle coat complex C 98.3 0.00037 8E-09 62.8 21.7 150 492-650 115-270 (299)
134 PLN03088 SGT1, suppressor of 98.3 1.3E-05 2.8E-10 80.2 13.9 90 562-651 9-99 (356)
135 KOG1070 rRNA processing protei 98.3 0.00017 3.7E-09 79.2 22.5 240 197-441 1441-1693(1710)
136 PRK14720 transcript cleavage f 98.3 0.00017 3.7E-09 78.5 22.6 149 455-634 117-269 (906)
137 KOG3060 Uncharacterized conser 98.2 0.00014 3.1E-09 64.9 17.4 164 457-622 55-225 (289)
138 PF09976 TPR_21: Tetratricopep 98.2 8.8E-05 1.9E-09 63.7 15.8 114 498-613 24-143 (145)
139 TIGR02552 LcrH_SycD type III s 98.2 4.2E-05 9.1E-10 65.1 13.8 115 507-624 5-121 (135)
140 KOG3060 Uncharacterized conser 98.2 0.00066 1.4E-08 60.8 20.9 163 488-653 55-222 (289)
141 PRK15331 chaperone protein Sic 98.2 4.5E-05 9.7E-10 64.2 13.0 92 559-650 41-133 (165)
142 KOG1914 mRNA cleavage and poly 98.2 0.0094 2E-07 59.6 30.9 122 456-580 368-497 (656)
143 PF09976 TPR_21: Tetratricopep 98.2 5E-05 1.1E-09 65.2 13.5 124 523-648 15-144 (145)
144 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.6E-05 7.7E-10 63.9 12.3 95 557-651 4-105 (119)
145 PF13414 TPR_11: TPR repeat; P 98.2 4.7E-06 1E-10 61.0 5.8 64 587-650 2-66 (69)
146 cd00189 TPR Tetratricopeptide 98.1 3.7E-05 8E-10 60.7 10.4 94 558-651 3-97 (100)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.6E-09 72.8 15.7 126 455-584 170-297 (395)
148 COG4235 Cytochrome c biogenesi 98.1 2E-05 4.2E-10 73.0 9.3 107 553-659 154-264 (287)
149 KOG0553 TPR repeat-containing 98.1 3.4E-05 7.5E-10 70.8 10.4 101 493-597 89-191 (304)
150 PF12895 Apc3: Anaphase-promot 98.0 3.2E-06 6.8E-11 64.7 2.7 79 568-647 2-83 (84)
151 PF13432 TPR_16: Tetratricopep 98.0 1.2E-05 2.6E-10 58.0 5.5 58 594-651 3-60 (65)
152 TIGR00756 PPR pentatricopeptid 98.0 1.3E-05 2.9E-10 49.2 4.7 35 80-115 1-35 (35)
153 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.4E-10 49.6 4.2 35 182-216 1-35 (35)
154 PF14559 TPR_19: Tetratricopep 98.0 2E-05 4.4E-10 57.4 6.2 53 599-651 2-54 (68)
155 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00011 2.4E-09 60.9 11.1 103 523-625 5-113 (119)
156 KOG0543 FKBP-type peptidyl-pro 97.9 6.2E-05 1.4E-09 72.3 10.1 87 588-700 257-343 (397)
157 KOG1914 mRNA cleavage and poly 97.9 0.032 7E-07 55.9 34.1 74 215-290 19-94 (656)
158 PRK14720 transcript cleavage f 97.9 0.005 1.1E-07 67.5 25.1 85 421-520 118-202 (906)
159 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 5E-10 47.7 4.4 33 486-518 2-34 (34)
160 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 4.9E-10 47.7 4.4 33 80-113 2-34 (34)
161 PF13371 TPR_9: Tetratricopept 97.9 4.5E-05 9.8E-10 56.5 6.6 59 595-653 2-60 (73)
162 CHL00033 ycf3 photosystem I as 97.8 0.00018 4E-09 63.7 11.0 94 555-648 35-139 (168)
163 PF13432 TPR_16: Tetratricopep 97.8 6.5E-05 1.4E-09 54.1 6.3 62 561-622 3-65 (65)
164 PLN03088 SGT1, suppressor of 97.8 0.00033 7.2E-09 70.1 13.5 105 529-635 11-117 (356)
165 PRK02603 photosystem I assembl 97.8 0.00019 4.2E-09 63.8 10.5 96 555-650 35-148 (172)
166 PRK10153 DNA-binding transcrip 97.8 0.0011 2.3E-08 69.5 17.2 139 482-622 334-487 (517)
167 PRK10153 DNA-binding transcrip 97.7 0.0011 2.4E-08 69.3 16.5 135 516-653 333-484 (517)
168 PRK02603 photosystem I assembl 97.7 0.00099 2.1E-08 59.2 14.1 129 485-637 35-166 (172)
169 COG3898 Uncharacterized membra 97.7 0.028 6.2E-07 53.9 23.1 210 431-650 166-391 (531)
170 PF13431 TPR_17: Tetratricopep 97.7 2.5E-05 5.4E-10 47.0 2.2 32 611-642 2-33 (34)
171 KOG2053 Mitochondrial inherita 97.7 0.11 2.4E-06 55.6 39.5 159 487-649 438-606 (932)
172 COG4700 Uncharacterized protei 97.6 0.0092 2E-07 50.9 17.0 145 499-646 70-217 (251)
173 PRK10803 tol-pal system protei 97.6 0.0013 2.8E-08 62.2 13.0 94 558-651 146-246 (263)
174 PF12895 Apc3: Anaphase-promot 97.6 0.00017 3.8E-09 55.0 5.9 80 498-580 2-83 (84)
175 PF04840 Vps16_C: Vps16, C-ter 97.6 0.09 2E-06 51.4 27.3 110 456-581 179-288 (319)
176 PF05843 Suf: Suppressor of fo 97.6 0.0027 5.9E-08 61.3 15.2 136 486-623 2-142 (280)
177 PF12688 TPR_5: Tetratrico pep 97.6 0.00093 2E-08 54.2 10.0 88 561-648 7-101 (120)
178 KOG1538 Uncharacterized conser 97.6 0.014 3.1E-07 59.4 20.0 183 341-587 623-805 (1081)
179 CHL00033 ycf3 photosystem I as 97.6 0.0018 3.9E-08 57.4 12.9 66 557-622 74-154 (168)
180 cd00189 TPR Tetratricopeptide 97.5 0.0012 2.5E-08 51.8 10.4 62 558-619 37-99 (100)
181 PF01535 PPR: PPR repeat; Int 97.5 0.00015 3.3E-09 42.8 3.7 29 81-110 2-30 (31)
182 PF01535 PPR: PPR repeat; Int 97.5 0.00013 2.9E-09 43.1 3.4 31 182-212 1-31 (31)
183 COG4700 Uncharacterized protei 97.5 0.006 1.3E-07 52.0 14.1 104 550-654 84-192 (251)
184 PF13414 TPR_11: TPR repeat; P 97.5 0.00025 5.4E-09 51.8 5.3 66 554-619 2-69 (69)
185 PF14559 TPR_19: Tetratricopep 97.5 0.00013 2.8E-09 53.1 3.8 62 567-628 3-65 (68)
186 PRK15363 pathogenicity island 97.5 0.0058 1.3E-07 51.5 13.8 89 528-618 43-133 (157)
187 PF07079 DUF1347: Protein of u 97.4 0.17 3.7E-06 50.0 32.7 61 587-648 459-521 (549)
188 PF13428 TPR_14: Tetratricopep 97.4 0.00033 7.2E-09 45.4 4.2 42 589-630 2-43 (44)
189 KOG2041 WD40 repeat protein [G 97.3 0.15 3.2E-06 52.9 24.4 152 264-443 747-902 (1189)
190 KOG2041 WD40 repeat protein [G 97.3 0.27 5.8E-06 51.2 27.4 152 129-308 748-904 (1189)
191 PRK10803 tol-pal system protei 97.3 0.0054 1.2E-07 58.0 13.7 99 523-623 146-252 (263)
192 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00092 2E-08 66.2 8.7 66 586-651 73-141 (453)
193 PRK10866 outer membrane biogen 97.3 0.037 8.1E-07 52.0 19.2 170 461-649 39-239 (243)
194 KOG1130 Predicted G-alpha GTPa 97.3 0.002 4.3E-08 61.8 10.2 128 522-649 197-342 (639)
195 KOG0550 Molecular chaperone (D 97.3 0.056 1.2E-06 52.5 19.5 148 495-644 259-436 (486)
196 PF04840 Vps16_C: Vps16, C-ter 97.3 0.13 2.8E-06 50.3 22.5 41 363-403 187-227 (319)
197 PF08579 RPM2: Mitochondrial r 97.2 0.0017 3.8E-08 50.4 7.5 79 185-263 29-116 (120)
198 PF13371 TPR_9: Tetratricopept 97.2 0.0012 2.5E-08 48.9 6.6 66 562-627 2-68 (73)
199 PF10037 MRP-S27: Mitochondria 97.2 0.005 1.1E-07 61.8 12.4 121 413-533 60-186 (429)
200 PF14938 SNAP: Soluble NSF att 97.2 0.065 1.4E-06 52.0 19.9 123 459-581 119-263 (282)
201 PF08579 RPM2: Mitochondrial r 97.2 0.0091 2E-07 46.5 10.6 79 489-567 29-116 (120)
202 PF10037 MRP-S27: Mitochondria 97.1 0.01 2.2E-07 59.6 13.7 113 386-498 68-186 (429)
203 PF13512 TPR_18: Tetratricopep 97.1 0.012 2.5E-07 48.8 11.6 92 560-651 15-128 (142)
204 COG3898 Uncharacterized membra 97.1 0.13 2.7E-06 49.7 19.7 181 467-652 97-293 (531)
205 KOG1538 Uncharacterized conser 97.1 0.22 4.7E-06 51.3 22.1 75 324-407 753-827 (1081)
206 KOG4234 TPR repeat-containing 97.0 0.0043 9.3E-08 53.5 8.8 90 562-651 102-197 (271)
207 PF14938 SNAP: Soluble NSF att 97.0 0.018 4E-07 55.8 14.5 167 455-624 36-232 (282)
208 PF13281 DUF4071: Domain of un 97.0 0.13 2.9E-06 50.7 20.0 161 459-621 146-338 (374)
209 PF12688 TPR_5: Tetratrico pep 97.0 0.02 4.4E-07 46.5 11.7 90 491-580 7-100 (120)
210 PF06239 ECSIT: Evolutionarily 97.0 0.0061 1.3E-07 53.9 9.2 97 68-165 34-153 (228)
211 KOG4555 TPR repeat-containing 96.9 0.0084 1.8E-07 47.7 8.7 91 563-653 51-146 (175)
212 PF03704 BTAD: Bacterial trans 96.9 0.011 2.3E-07 51.0 10.4 105 531-650 17-124 (146)
213 PRK11906 transcriptional regul 96.9 0.018 4E-07 57.4 13.0 145 500-646 273-431 (458)
214 PF13424 TPR_12: Tetratricopep 96.9 0.0015 3.3E-08 49.0 4.5 61 589-649 6-73 (78)
215 KOG1258 mRNA processing protei 96.9 0.68 1.5E-05 47.8 30.8 410 180-638 44-491 (577)
216 KOG2796 Uncharacterized conser 96.8 0.051 1.1E-06 49.3 13.6 125 84-209 182-314 (366)
217 PF05843 Suf: Suppressor of fo 96.8 0.017 3.7E-07 55.8 11.9 130 521-651 2-136 (280)
218 PF06239 ECSIT: Evolutionarily 96.8 0.022 4.8E-07 50.5 11.0 89 482-570 44-153 (228)
219 PF13525 YfiO: Outer membrane 96.7 0.15 3.2E-06 46.6 17.1 162 462-642 13-198 (203)
220 KOG2796 Uncharacterized conser 96.7 0.14 3.1E-06 46.5 15.5 138 487-624 179-322 (366)
221 KOG0543 FKBP-type peptidyl-pro 96.6 0.029 6.3E-07 54.5 11.9 139 492-651 215-355 (397)
222 KOG2280 Vacuolar assembly/sort 96.6 0.46 1E-05 50.1 20.9 100 393-507 693-792 (829)
223 PF13525 YfiO: Outer membrane 96.6 0.12 2.6E-06 47.2 15.6 141 487-651 7-170 (203)
224 PF13424 TPR_12: Tetratricopep 96.6 0.004 8.6E-08 46.7 4.8 62 556-617 6-75 (78)
225 PRK10866 outer membrane biogen 96.6 0.39 8.5E-06 45.2 19.1 53 561-613 181-237 (243)
226 COG4235 Cytochrome c biogenesi 96.6 0.12 2.6E-06 48.5 15.2 103 519-623 155-262 (287)
227 PRK11906 transcriptional regul 96.5 0.32 6.9E-06 48.9 18.5 81 571-651 320-401 (458)
228 COG0457 NrfG FOG: TPR repeat [ 96.5 0.73 1.6E-05 43.2 27.1 195 454-651 59-265 (291)
229 KOG1130 Predicted G-alpha GTPa 96.4 0.019 4.2E-07 55.3 9.2 153 487-639 197-372 (639)
230 COG1729 Uncharacterized protei 96.3 0.048 1E-06 50.4 10.6 91 533-623 154-250 (262)
231 PF07079 DUF1347: Protein of u 96.2 1.5 3.2E-05 43.7 38.1 124 465-593 390-530 (549)
232 PF09205 DUF1955: Domain of un 96.2 0.36 7.7E-06 39.0 13.4 141 495-654 12-152 (161)
233 KOG1941 Acetylcholine receptor 96.2 0.3 6.4E-06 46.7 15.3 192 456-647 124-356 (518)
234 COG4105 ComL DNA uptake lipopr 96.2 0.87 1.9E-05 41.9 17.7 170 465-650 45-232 (254)
235 PF07719 TPR_2: Tetratricopept 95.9 0.022 4.8E-07 34.2 4.7 33 589-621 2-34 (34)
236 COG3118 Thioredoxin domain-con 95.9 1.2 2.5E-05 42.0 17.6 115 532-648 146-262 (304)
237 PF03704 BTAD: Bacterial trans 95.9 0.074 1.6E-06 45.7 9.8 70 487-558 64-139 (146)
238 PF00515 TPR_1: Tetratricopept 95.8 0.018 3.9E-07 34.6 4.1 33 589-621 2-34 (34)
239 COG3118 Thioredoxin domain-con 95.7 0.43 9.4E-06 44.7 14.1 177 471-648 120-299 (304)
240 COG1729 Uncharacterized protei 95.7 0.096 2.1E-06 48.5 9.9 95 557-652 144-245 (262)
241 KOG2280 Vacuolar assembly/sort 95.7 3.7 8E-05 43.8 30.3 135 210-345 426-573 (829)
242 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.067 1.5E-06 53.4 9.2 63 555-617 75-141 (453)
243 COG0457 NrfG FOG: TPR repeat [ 95.4 2.2 4.9E-05 39.7 26.0 200 419-620 59-268 (291)
244 PRK11619 lytic murein transgly 95.2 6 0.00013 43.2 30.2 117 498-616 254-374 (644)
245 KOG1941 Acetylcholine receptor 95.1 0.83 1.8E-05 43.9 14.0 198 420-617 44-275 (518)
246 PF04184 ST7: ST7 protein; In 95.1 0.74 1.6E-05 46.5 14.3 146 491-650 174-323 (539)
247 PF13428 TPR_14: Tetratricopep 95.1 0.047 1E-06 35.2 4.3 29 623-651 2-30 (44)
248 COG4785 NlpI Lipoprotein NlpI, 95.0 1.8 4E-05 38.5 14.7 177 467-652 78-267 (297)
249 KOG1920 IkappaB kinase complex 95.0 3.1 6.8E-05 46.8 19.6 153 468-649 894-1053(1265)
250 PF10300 DUF3808: Protein of u 94.9 1.3 2.8E-05 46.4 16.5 55 594-648 311-373 (468)
251 KOG2610 Uncharacterized conser 94.9 0.75 1.6E-05 43.6 12.8 154 467-624 116-285 (491)
252 KOG4648 Uncharacterized conser 94.8 0.1 2.2E-06 49.3 7.2 94 528-623 105-200 (536)
253 COG4105 ComL DNA uptake lipopr 94.8 2.7 5.8E-05 38.8 16.0 140 488-651 37-196 (254)
254 PF04184 ST7: ST7 protein; In 94.7 1.9 4.1E-05 43.7 16.0 101 524-624 263-382 (539)
255 PRK15331 chaperone protein Sic 94.7 0.8 1.7E-05 39.2 11.6 89 493-584 45-134 (165)
256 KOG2610 Uncharacterized conser 94.7 0.35 7.6E-06 45.8 10.3 160 496-658 114-283 (491)
257 PF02259 FAT: FAT domain; Int 94.7 2.3 5E-05 43.0 17.7 151 483-635 144-305 (352)
258 smart00299 CLH Clathrin heavy 94.7 2.1 4.6E-05 36.2 14.7 125 489-633 11-136 (140)
259 KOG4555 TPR repeat-containing 94.6 0.1 2.2E-06 41.8 5.7 57 595-651 50-106 (175)
260 COG5107 RNA14 Pre-mRNA 3'-end 94.6 5.5 0.00012 39.8 31.1 77 46-125 40-119 (660)
261 smart00299 CLH Clathrin heavy 94.6 1.9 4.2E-05 36.5 14.3 121 460-600 13-137 (140)
262 PRK10941 hypothetical protein; 94.5 0.27 5.9E-06 46.5 9.4 83 591-696 184-266 (269)
263 PF10300 DUF3808: Protein of u 94.5 1.4 3E-05 46.2 15.6 157 459-617 193-376 (468)
264 PF12921 ATP13: Mitochondrial 94.4 0.42 9.1E-06 39.3 9.3 99 215-331 1-101 (126)
265 PF13512 TPR_18: Tetratricopep 94.4 1.6 3.4E-05 36.5 12.4 116 490-623 15-134 (142)
266 COG2976 Uncharacterized protei 94.4 1.9 4.2E-05 37.8 13.2 94 528-621 97-192 (207)
267 PF12921 ATP13: Mitochondrial 94.4 0.58 1.3E-05 38.5 9.9 50 550-600 47-100 (126)
268 KOG3941 Intermediate in Toll s 94.3 0.31 6.8E-06 44.9 8.7 111 66-177 52-186 (406)
269 PF13281 DUF4071: Domain of un 94.2 2.7 5.9E-05 41.8 15.7 72 358-429 146-227 (374)
270 KOG1585 Protein required for f 94.1 4.5 9.8E-05 36.9 16.2 86 558-645 153-250 (308)
271 KOG2114 Vacuolar assembly/sort 94.0 3.1 6.7E-05 44.9 16.4 141 460-612 374-514 (933)
272 KOG3941 Intermediate in Toll s 93.9 0.71 1.5E-05 42.7 10.2 98 474-571 54-174 (406)
273 PF13181 TPR_8: Tetratricopept 93.9 0.12 2.6E-06 30.9 3.9 31 590-620 3-33 (34)
274 PF04053 Coatomer_WDAD: Coatom 93.8 1.5 3.3E-05 45.1 13.9 159 393-582 270-429 (443)
275 PF09613 HrpB1_HrpK: Bacterial 93.8 2.2 4.9E-05 36.3 12.4 110 529-643 19-130 (160)
276 PRK09687 putative lyase; Provi 93.8 6.9 0.00015 37.8 24.5 132 453-595 141-274 (280)
277 PF13176 TPR_7: Tetratricopept 93.5 0.13 2.9E-06 31.3 3.6 26 624-649 1-26 (36)
278 TIGR02561 HrpB1_HrpK type III 93.4 0.54 1.2E-05 39.2 7.9 53 600-652 22-74 (153)
279 PF09613 HrpB1_HrpK: Bacterial 93.3 0.74 1.6E-05 39.2 8.8 71 567-637 22-93 (160)
280 PF09205 DUF1955: Domain of un 93.1 4 8.7E-05 33.2 12.9 65 487-552 88-152 (161)
281 COG5107 RNA14 Pre-mRNA 3'-end 93.0 11 0.00023 37.8 30.9 124 523-647 400-527 (660)
282 COG2909 MalT ATP-dependent tra 93.0 17 0.00037 40.0 21.6 42 197-243 196-237 (894)
283 KOG1920 IkappaB kinase complex 92.8 21 0.00045 40.7 22.4 156 265-479 894-1051(1265)
284 KOG4648 Uncharacterized conser 92.8 0.31 6.8E-06 46.2 6.4 80 492-581 104-191 (536)
285 KOG1258 mRNA processing protei 92.5 15 0.00034 38.4 26.6 123 520-643 297-421 (577)
286 KOG1585 Protein required for f 92.5 2.4 5.1E-05 38.6 11.0 23 491-513 37-59 (308)
287 PF00637 Clathrin: Region in C 92.4 0.034 7.3E-07 47.6 -0.3 85 120-207 12-96 (143)
288 KOG0545 Aryl-hydrocarbon recep 92.2 4 8.8E-05 37.2 12.1 91 560-651 183-293 (329)
289 PF04053 Coatomer_WDAD: Coatom 92.1 3.1 6.7E-05 43.0 13.3 153 465-647 272-427 (443)
290 KOG1308 Hsp70-interacting prot 92.1 0.13 2.8E-06 48.9 3.1 93 566-658 125-218 (377)
291 PF07719 TPR_2: Tetratricopept 92.1 0.19 4E-06 30.0 2.9 29 623-651 2-30 (34)
292 PF13176 TPR_7: Tetratricopept 91.8 0.33 7.1E-06 29.5 3.7 27 591-617 2-28 (36)
293 PRK09687 putative lyase; Provi 91.2 15 0.00032 35.5 23.6 75 350-429 203-277 (280)
294 COG4649 Uncharacterized protei 91.1 3.3 7.2E-05 35.5 9.9 122 495-616 68-195 (221)
295 COG3629 DnrI DNA-binding trans 91.0 2.2 4.7E-05 40.5 9.9 72 487-560 155-232 (280)
296 KOG4234 TPR repeat-containing 91.0 1.8 3.9E-05 38.0 8.5 71 562-632 141-212 (271)
297 KOG3364 Membrane protein invol 90.9 3.6 7.9E-05 33.6 9.5 31 591-621 74-104 (149)
298 PF07721 TPR_4: Tetratricopept 90.8 0.32 7E-06 26.9 2.7 24 623-646 2-25 (26)
299 PF10345 Cohesin_load: Cohesin 90.8 29 0.00063 38.1 32.4 80 164-243 153-252 (608)
300 PF08631 SPO22: Meiosis protei 90.7 17 0.00036 35.2 23.5 60 421-481 86-148 (278)
301 PF14853 Fis1_TPR_C: Fis1 C-te 90.7 1.3 2.8E-05 29.7 5.9 48 625-698 4-51 (53)
302 PF13170 DUF4003: Protein of u 90.6 13 0.00029 36.0 15.2 141 401-571 79-233 (297)
303 KOG0890 Protein kinase of the 90.4 55 0.0012 40.7 32.5 369 225-632 1392-1799(2382)
304 KOG4642 Chaperone-dependent E3 90.4 0.81 1.8E-05 41.3 6.1 84 565-648 20-104 (284)
305 PF06552 TOM20_plant: Plant sp 90.3 0.46 1E-05 41.0 4.4 45 604-648 51-99 (186)
306 KOG2114 Vacuolar assembly/sort 90.2 32 0.0007 37.7 24.4 146 50-203 336-485 (933)
307 KOG1586 Protein required for f 90.2 14 0.00031 33.6 14.2 91 534-625 128-232 (288)
308 PF07035 Mic1: Colon cancer-as 90.1 8.3 0.00018 33.4 11.9 135 99-245 13-149 (167)
309 PF14853 Fis1_TPR_C: Fis1 C-te 90.0 1.3 2.8E-05 29.8 5.4 36 591-626 4-39 (53)
310 PF00515 TPR_1: Tetratricopept 89.7 0.86 1.9E-05 27.1 4.2 32 486-519 2-33 (34)
311 PF13174 TPR_6: Tetratricopept 89.6 0.71 1.5E-05 27.1 3.8 25 596-620 8-32 (33)
312 PF10602 RPN7: 26S proteasome 89.0 4.5 9.7E-05 35.8 9.9 93 487-581 38-139 (177)
313 KOG0890 Protein kinase of the 89.0 71 0.0015 39.9 27.8 65 587-653 1669-1733(2382)
314 PF13181 TPR_8: Tetratricopept 88.9 0.75 1.6E-05 27.3 3.5 28 623-650 2-29 (34)
315 PF02259 FAT: FAT domain; Int 88.6 29 0.00062 34.9 18.5 66 586-651 144-213 (352)
316 PF13170 DUF4003: Protein of u 88.4 5.2 0.00011 38.8 10.6 51 96-146 78-134 (297)
317 PF07035 Mic1: Colon cancer-as 87.9 10 0.00022 32.9 10.9 133 201-346 14-148 (167)
318 PF13174 TPR_6: Tetratricopept 87.7 0.55 1.2E-05 27.6 2.4 28 624-651 2-29 (33)
319 PF13431 TPR_17: Tetratricopep 87.5 0.64 1.4E-05 27.8 2.5 21 555-575 13-33 (34)
320 PF13374 TPR_10: Tetratricopep 87.3 0.8 1.7E-05 28.7 3.1 28 623-650 3-30 (42)
321 COG4649 Uncharacterized protei 87.0 19 0.00042 31.1 16.0 25 624-648 169-193 (221)
322 PRK15180 Vi polysaccharide bio 86.9 6.8 0.00015 39.4 10.3 91 530-621 333-424 (831)
323 KOG1550 Extracellular protein 86.8 50 0.0011 35.7 20.9 146 500-651 379-538 (552)
324 COG3629 DnrI DNA-binding trans 86.8 3.3 7.2E-05 39.3 8.0 60 557-616 155-215 (280)
325 PF04097 Nic96: Nup93/Nic96; 86.6 55 0.0012 35.9 18.6 17 632-648 515-531 (613)
326 COG2976 Uncharacterized protei 86.5 19 0.00042 31.9 11.7 89 491-584 95-188 (207)
327 PRK11619 lytic murein transgly 86.1 59 0.0013 35.8 35.9 92 562-654 414-508 (644)
328 smart00028 TPR Tetratricopepti 86.0 1.4 3.1E-05 25.1 3.7 27 593-619 6-32 (34)
329 COG4455 ImpE Protein of avirul 86.0 22 0.00047 32.1 11.8 127 488-623 4-140 (273)
330 PF04097 Nic96: Nup93/Nic96; 85.9 59 0.0013 35.6 24.9 39 289-330 265-303 (613)
331 TIGR02561 HrpB1_HrpK type III 85.8 16 0.00035 30.8 10.4 63 532-598 22-87 (153)
332 KOG2066 Vacuolar assembly/sort 85.8 59 0.0013 35.5 22.2 49 252-300 393-441 (846)
333 TIGR03504 FimV_Cterm FimV C-te 85.8 1.5 3.3E-05 28.0 3.6 26 626-651 3-28 (44)
334 PF06552 TOM20_plant: Plant sp 85.7 7.2 0.00016 34.0 8.7 43 604-653 96-138 (186)
335 KOG4570 Uncharacterized conser 85.2 8.9 0.00019 36.4 9.7 97 449-549 59-164 (418)
336 PF14432 DYW_deaminase: DYW fa 85.2 0.96 2.1E-05 36.6 3.2 27 658-688 2-28 (116)
337 PF11207 DUF2989: Protein of u 85.2 10 0.00022 33.9 9.6 76 565-642 117-198 (203)
338 KOG1586 Protein required for f 85.2 30 0.00066 31.6 16.0 90 561-650 119-223 (288)
339 KOG0551 Hsp90 co-chaperone CNS 85.0 17 0.00036 35.1 11.4 93 556-648 82-179 (390)
340 PF00637 Clathrin: Region in C 84.9 1.8 3.8E-05 36.9 5.0 52 188-239 14-65 (143)
341 PF10602 RPN7: 26S proteasome 84.9 11 0.00024 33.4 10.0 93 556-648 37-139 (177)
342 PF14561 TPR_20: Tetratricopep 84.8 3.2 6.9E-05 31.8 5.7 43 609-651 9-51 (90)
343 KOG2066 Vacuolar assembly/sort 84.7 66 0.0014 35.1 21.0 31 455-485 506-536 (846)
344 COG4785 NlpI Lipoprotein NlpI, 84.4 3.1 6.8E-05 37.1 6.1 111 529-644 74-188 (297)
345 PF09986 DUF2225: Uncharacteri 84.2 5.8 0.00013 36.4 8.2 64 588-651 118-194 (214)
346 TIGR02508 type_III_yscG type I 83.9 11 0.00023 29.1 7.8 86 130-219 20-105 (115)
347 PF11207 DUF2989: Protein of u 83.5 8.2 0.00018 34.4 8.3 42 533-574 153-197 (203)
348 KOG0376 Serine-threonine phosp 83.2 2.3 5E-05 42.9 5.4 88 563-650 12-100 (476)
349 PF08631 SPO22: Meiosis protei 82.8 47 0.001 32.1 23.1 21 629-649 253-273 (278)
350 TIGR02508 type_III_yscG type I 82.8 20 0.00043 27.7 9.6 60 462-524 47-106 (115)
351 PF09670 Cas_Cas02710: CRISPR- 82.4 61 0.0013 33.0 17.8 52 496-548 142-197 (379)
352 KOG1550 Extracellular protein 82.2 79 0.0017 34.2 17.7 45 435-480 228-275 (552)
353 PF13374 TPR_10: Tetratricopep 81.5 3.9 8.5E-05 25.4 4.5 28 486-513 3-30 (42)
354 PF04910 Tcf25: Transcriptiona 81.0 65 0.0014 32.5 17.5 53 529-581 112-165 (360)
355 PF02284 COX5A: Cytochrome c o 80.4 19 0.00042 27.9 8.1 58 503-562 28-86 (108)
356 PF13929 mRNA_stabil: mRNA sta 80.2 43 0.00094 31.9 12.2 64 211-274 197-261 (292)
357 PRK12798 chemotaxis protein; R 79.8 72 0.0016 32.2 25.1 205 467-699 125-348 (421)
358 PRK10941 hypothetical protein; 79.8 15 0.00033 35.0 9.4 68 558-625 184-252 (269)
359 KOG4570 Uncharacterized conser 79.7 14 0.00031 35.2 8.8 101 144-246 58-165 (418)
360 COG4455 ImpE Protein of avirul 79.4 7.6 0.00016 34.9 6.6 65 559-623 5-70 (273)
361 KOG3364 Membrane protein invol 78.9 30 0.00065 28.6 9.2 65 517-581 29-97 (149)
362 KOG4507 Uncharacterized conser 78.1 8.2 0.00018 40.0 7.3 104 530-633 617-721 (886)
363 PF07721 TPR_4: Tetratricopept 78.1 4.5 9.7E-05 22.3 3.3 21 559-579 5-25 (26)
364 COG2912 Uncharacterized conser 77.7 19 0.0004 33.9 9.0 78 593-693 186-263 (269)
365 PF12968 DUF3856: Domain of Un 77.6 30 0.00065 27.8 8.6 33 616-648 90-126 (144)
366 smart00028 TPR Tetratricopepti 77.6 4.2 9.1E-05 22.9 3.5 29 623-651 2-30 (34)
367 KOG0276 Vesicle coat complex C 77.3 36 0.00078 35.8 11.5 147 467-646 599-745 (794)
368 COG0790 FOG: TPR repeat, SEL1 76.3 79 0.0017 30.8 20.3 146 500-652 92-267 (292)
369 PF10579 Rapsyn_N: Rapsyn N-te 76.2 6 0.00013 28.9 4.3 46 600-645 18-66 (80)
370 COG3947 Response regulator con 75.7 10 0.00022 35.7 6.6 59 591-649 282-340 (361)
371 cd00923 Cyt_c_Oxidase_Va Cytoc 75.5 20 0.00043 27.5 6.9 43 586-628 40-82 (103)
372 COG1747 Uncharacterized N-term 75.3 1.1E+02 0.0023 31.8 22.7 192 451-649 63-286 (711)
373 PF14561 TPR_20: Tetratricopep 74.5 32 0.0007 26.3 8.3 63 586-648 20-85 (90)
374 COG2909 MalT ATP-dependent tra 74.2 1.5E+02 0.0033 33.1 27.7 25 525-549 623-647 (894)
375 PF02284 COX5A: Cytochrome c o 73.9 23 0.00049 27.6 7.0 44 586-629 43-86 (108)
376 smart00386 HAT HAT (Half-A-TPR 73.8 7.2 0.00016 22.4 3.8 29 602-630 1-29 (33)
377 cd00923 Cyt_c_Oxidase_Va Cytoc 73.8 39 0.00085 26.0 8.9 60 501-562 23-83 (103)
378 KOG1464 COP9 signalosome, subu 73.1 82 0.0018 29.5 18.0 236 368-612 42-327 (440)
379 PF07720 TPR_3: Tetratricopept 72.8 14 0.0003 22.4 4.7 30 591-620 4-35 (36)
380 PF10579 Rapsyn_N: Rapsyn N-te 72.8 13 0.00027 27.3 5.2 46 532-577 18-65 (80)
381 COG3947 Response regulator con 71.3 98 0.0021 29.6 13.5 58 558-615 282-340 (361)
382 PF12862 Apc5: Anaphase-promot 70.5 14 0.0003 28.6 5.6 52 599-650 9-69 (94)
383 KOG2063 Vacuolar assembly/sort 70.0 1.6E+02 0.0035 33.4 15.2 114 49-163 505-639 (877)
384 KOG2471 TPR repeat-containing 69.6 68 0.0015 32.9 11.1 67 590-659 208-274 (696)
385 PF13762 MNE1: Mitochondrial s 68.4 57 0.0012 27.6 8.9 78 153-230 42-129 (145)
386 KOG3824 Huntingtin interacting 68.4 11 0.00025 35.6 5.3 63 565-627 126-189 (472)
387 KOG0276 Vesicle coat complex C 67.4 89 0.0019 33.1 11.6 100 465-581 648-747 (794)
388 COG5159 RPN6 26S proteasome re 67.0 1.2E+02 0.0026 28.9 13.2 32 391-422 10-41 (421)
389 PF13762 MNE1: Mitochondrial s 66.3 64 0.0014 27.3 8.8 80 82-162 42-127 (145)
390 PF04781 DUF627: Protein of un 66.3 45 0.00097 26.6 7.4 42 606-647 62-103 (111)
391 PF09477 Type_III_YscG: Bacter 65.7 50 0.0011 26.0 7.3 80 129-211 20-99 (116)
392 KOG4642 Chaperone-dependent E3 65.4 87 0.0019 29.0 9.9 84 463-548 19-106 (284)
393 PF10345 Cohesin_load: Cohesin 65.3 2.2E+02 0.0048 31.4 38.3 49 601-649 547-604 (608)
394 KOG3807 Predicted membrane pro 64.7 1.2E+02 0.0025 29.5 11.1 22 605-626 379-400 (556)
395 TIGR03504 FimV_Cterm FimV C-te 64.7 16 0.00034 23.5 3.9 24 491-514 5-28 (44)
396 PF13929 mRNA_stabil: mRNA sta 64.1 1.4E+02 0.003 28.7 13.5 59 349-407 198-261 (292)
397 PRK15180 Vi polysaccharide bio 64.1 1.8E+02 0.0039 29.9 24.7 123 126-251 300-426 (831)
398 KOG4279 Serine/threonine prote 63.9 1.3E+02 0.0029 32.7 12.4 101 495-622 297-400 (1226)
399 PF14863 Alkyl_sulf_dimr: Alky 63.6 36 0.00079 28.7 7.0 64 572-639 58-121 (141)
400 COG4976 Predicted methyltransf 62.4 13 0.00027 33.8 4.2 60 564-623 4-64 (287)
401 PF09477 Type_III_YscG: Bacter 61.1 81 0.0017 24.9 8.9 79 434-515 21-99 (116)
402 KOG3824 Huntingtin interacting 60.7 23 0.00049 33.7 5.7 51 598-648 126-176 (472)
403 KOG2297 Predicted translation 60.4 1.7E+02 0.0036 28.3 12.5 241 280-548 109-399 (412)
404 KOG2063 Vacuolar assembly/sort 60.3 3.1E+02 0.0066 31.4 16.9 27 386-412 506-532 (877)
405 PHA02537 M terminase endonucle 59.2 97 0.0021 28.7 9.5 106 496-621 94-211 (230)
406 COG4976 Predicted methyltransf 58.8 18 0.00039 32.8 4.6 57 598-654 5-61 (287)
407 PRK12798 chemotaxis protein; R 58.1 2.2E+02 0.0048 29.0 18.4 192 459-651 86-286 (421)
408 KOG0530 Protein farnesyltransf 57.5 1.7E+02 0.0037 27.6 15.6 120 571-697 94-216 (318)
409 KOG2581 26S proteasome regulat 55.4 2.4E+02 0.0051 28.5 15.4 138 485-623 124-282 (493)
410 cd08819 CARD_MDA5_2 Caspase ac 55.0 69 0.0015 24.2 6.3 65 28-99 21-85 (88)
411 PRK13800 putative oxidoreducta 54.8 4.1E+02 0.0088 31.1 27.1 50 482-534 786-835 (897)
412 PF07163 Pex26: Pex26 protein; 54.4 1.2E+02 0.0027 28.8 9.2 54 391-446 90-145 (309)
413 cd00280 TRFH Telomeric Repeat 53.6 77 0.0017 27.9 7.3 45 595-640 118-162 (200)
414 KOG4507 Uncharacterized conser 53.3 92 0.002 32.8 9.0 133 517-651 568-705 (886)
415 COG5191 Uncharacterized conser 53.2 27 0.00059 33.3 5.0 77 554-630 106-184 (435)
416 PF07575 Nucleopor_Nup85: Nup8 52.8 3.4E+02 0.0074 29.6 18.5 73 270-345 393-465 (566)
417 PF11846 DUF3366: Domain of un 52.8 46 0.001 30.0 6.6 30 552-581 141-170 (193)
418 PRK13342 recombination factor 52.4 2.5E+02 0.0054 29.1 12.6 42 184-225 230-274 (413)
419 PF04190 DUF410: Protein of un 52.4 2.2E+02 0.0047 27.2 14.7 141 191-347 20-170 (260)
420 COG5159 RPN6 26S proteasome re 52.3 2.2E+02 0.0047 27.2 17.7 33 288-321 9-41 (421)
421 KOG4077 Cytochrome c oxidase, 51.9 1.1E+02 0.0024 25.0 7.3 59 503-562 67-125 (149)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 51.9 96 0.0021 25.6 7.6 43 538-580 81-124 (126)
423 KOG0403 Neoplastic transformat 51.8 2.8E+02 0.0061 28.4 15.8 342 4-399 209-589 (645)
424 PF08311 Mad3_BUB1_I: Mad3/BUB 50.5 1.1E+02 0.0024 25.2 7.8 42 606-647 81-124 (126)
425 PF11768 DUF3312: Protein of u 50.3 2.2E+02 0.0049 30.1 11.3 127 459-609 413-544 (545)
426 cd08819 CARD_MDA5_2 Caspase ac 50.3 1.1E+02 0.0023 23.3 6.6 65 235-301 21-85 (88)
427 KOG4814 Uncharacterized conser 49.1 82 0.0018 33.6 8.0 62 591-652 397-458 (872)
428 PF06957 COPI_C: Coatomer (COP 48.9 1.1E+02 0.0023 31.4 8.7 48 589-650 301-348 (422)
429 PF12862 Apc5: Anaphase-promot 48.1 69 0.0015 24.7 6.0 27 592-618 45-71 (94)
430 COG5191 Uncharacterized conser 48.0 26 0.00057 33.4 4.0 64 586-649 105-169 (435)
431 PF10516 SHNi-TPR: SHNi-TPR; 47.5 38 0.00083 20.9 3.4 28 623-650 2-29 (38)
432 smart00638 LPD_N Lipoprotein N 47.4 4.1E+02 0.009 29.0 19.6 59 47-108 309-368 (574)
433 PRK13800 putative oxidoreducta 47.3 5.3E+02 0.011 30.2 24.3 92 249-345 787-879 (897)
434 COG0735 Fur Fe2+/Zn2+ uptake r 47.0 74 0.0016 27.0 6.4 63 101-164 7-69 (145)
435 KOG1464 COP9 signalosome, subu 45.6 2.7E+02 0.0058 26.3 18.4 182 396-577 39-253 (440)
436 PF07163 Pex26: Pex26 protein; 45.5 2.1E+02 0.0046 27.3 9.3 83 527-611 90-181 (309)
437 KOG4567 GTPase-activating prot 44.7 1.7E+02 0.0037 28.3 8.6 44 201-244 263-306 (370)
438 PF12583 TPPII_N: Tripeptidyl 43.8 92 0.002 25.6 5.9 41 594-634 82-122 (139)
439 PRK10564 maltose regulon perip 43.1 48 0.001 31.8 5.0 39 487-525 259-297 (303)
440 TIGR02710 CRISPR-associated pr 42.6 3.8E+02 0.0082 27.2 12.0 53 493-545 138-196 (380)
441 PF07064 RIC1: RIC1; InterPro 42.0 3.1E+02 0.0068 26.1 14.4 86 257-347 159-249 (258)
442 KOG4567 GTPase-activating prot 41.6 3.4E+02 0.0074 26.4 10.2 75 505-584 263-347 (370)
443 KOG0376 Serine-threonine phosp 41.5 51 0.0011 33.8 5.2 103 492-598 11-115 (476)
444 PF10366 Vps39_1: Vacuolar sor 41.4 1.8E+02 0.0039 23.2 7.4 28 182-209 40-67 (108)
445 PF11817 Foie-gras_1: Foie gra 41.0 1.2E+02 0.0026 28.7 7.5 53 560-612 183-242 (247)
446 KOG0991 Replication factor C, 39.9 3.1E+02 0.0068 25.5 12.2 38 482-520 236-273 (333)
447 PHA02875 ankyrin repeat protei 39.7 4.4E+02 0.0096 27.1 18.0 19 157-175 72-90 (413)
448 KOG1308 Hsp70-interacting prot 39.5 28 0.00062 33.8 3.0 47 467-513 127-176 (377)
449 PHA02875 ankyrin repeat protei 38.6 4.6E+02 0.01 27.0 15.1 144 17-175 7-157 (413)
450 KOG2659 LisH motif-containing 38.5 2.9E+02 0.0062 25.5 8.9 16 565-580 113-128 (228)
451 PF10366 Vps39_1: Vacuolar sor 38.0 2.1E+02 0.0045 22.9 8.1 27 487-513 41-67 (108)
452 KOG2471 TPR repeat-containing 37.9 4.9E+02 0.011 27.2 16.1 47 589-635 336-382 (696)
453 PF11846 DUF3366: Domain of un 37.7 1.4E+02 0.0031 26.8 7.3 34 586-619 142-175 (193)
454 KOG0686 COP9 signalosome, subu 37.1 4.7E+02 0.01 26.6 14.1 181 284-493 152-352 (466)
455 smart00777 Mad3_BUB1_I Mad3/BU 37.0 2.4E+02 0.0052 23.3 9.0 43 538-580 81-124 (125)
456 COG0790 FOG: TPR repeat, SEL1 36.8 4E+02 0.0086 25.8 19.2 113 469-584 92-220 (292)
457 PRK10564 maltose regulon perip 36.6 46 0.00099 32.0 3.8 36 184-219 260-295 (303)
458 PF11663 Toxin_YhaV: Toxin wit 36.0 52 0.0011 27.2 3.5 33 192-226 106-138 (140)
459 KOG4521 Nuclear pore complex, 36.0 8E+02 0.017 29.0 15.5 133 488-623 986-1138(1480)
460 KOG4077 Cytochrome c oxidase, 35.5 2.1E+02 0.0046 23.5 6.7 46 582-628 79-124 (149)
461 PRK13342 recombination factor 35.0 5.3E+02 0.012 26.7 18.4 45 489-533 231-278 (413)
462 PF11848 DUF3368: Domain of un 35.0 1.3E+02 0.0028 19.7 5.2 33 496-528 13-45 (48)
463 PF12069 DUF3549: Protein of u 34.5 4.8E+02 0.01 26.0 12.8 31 518-548 228-258 (340)
464 KOG2581 26S proteasome regulat 34.3 3.5E+02 0.0075 27.5 9.3 132 521-652 125-277 (493)
465 cd02679 MIT_spastin MIT: domai 33.9 24 0.00051 26.1 1.2 41 601-650 21-67 (79)
466 KOG2908 26S proteasome regulat 33.7 4.3E+02 0.0093 26.1 9.6 87 455-541 76-178 (380)
467 KOG2396 HAT (Half-A-TPR) repea 33.7 5.9E+02 0.013 26.8 33.2 421 96-581 87-556 (568)
468 PF04910 Tcf25: Transcriptiona 33.6 5.2E+02 0.011 26.1 14.8 166 469-648 25-219 (360)
469 PF14689 SPOB_a: Sensor_kinase 33.5 70 0.0015 22.4 3.5 25 489-513 27-51 (62)
470 PF10255 Paf67: RNA polymerase 33.5 2.5E+02 0.0053 28.8 8.6 106 518-649 70-191 (404)
471 TIGR02710 CRISPR-associated pr 33.3 5.3E+02 0.012 26.2 11.4 54 528-581 138-197 (380)
472 KOG2758 Translation initiation 33.2 4.7E+02 0.01 25.6 13.7 163 442-616 23-195 (432)
473 PF11663 Toxin_YhaV: Toxin wit 32.7 44 0.00094 27.6 2.6 33 496-530 106-138 (140)
474 COG4941 Predicted RNA polymera 32.6 5E+02 0.011 25.7 12.3 121 500-623 271-400 (415)
475 COG4016 Uncharacterized protei 32.6 1.4E+02 0.0031 24.4 5.4 40 611-650 57-96 (165)
476 PRK14015 pepN aminopeptidase N 32.0 8.7E+02 0.019 28.2 14.0 74 571-644 766-846 (875)
477 PF15469 Sec5: Exocyst complex 31.8 3.7E+02 0.008 23.9 10.6 27 602-628 153-179 (182)
478 smart00777 Mad3_BUB1_I Mad3/BU 31.6 3E+02 0.0064 22.7 7.5 40 607-646 82-123 (125)
479 cd08326 CARD_CASP9 Caspase act 31.3 2.1E+02 0.0046 21.5 6.0 59 28-94 18-76 (84)
480 PRK11639 zinc uptake transcrip 31.1 1.7E+02 0.0037 25.6 6.4 45 186-230 30-74 (169)
481 PF14689 SPOB_a: Sensor_kinase 31.0 1E+02 0.0022 21.5 4.0 29 520-548 23-51 (62)
482 COG0735 Fur Fe2+/Zn2+ uptake r 31.0 1.8E+02 0.004 24.7 6.3 40 187-226 26-65 (145)
483 PF11768 DUF3312: Protein of u 30.9 2.3E+02 0.0049 30.0 7.9 65 51-116 411-480 (545)
484 COG4259 Uncharacterized protei 30.8 1.8E+02 0.0038 22.7 5.3 25 622-646 72-96 (121)
485 PRK09462 fur ferric uptake reg 30.7 2E+02 0.0043 24.5 6.6 62 104-166 6-68 (148)
486 COG4259 Uncharacterized protei 30.4 2.6E+02 0.0057 21.8 6.3 18 561-578 78-95 (121)
487 PF13934 ELYS: Nuclear pore co 30.2 4.5E+02 0.0098 24.4 11.2 107 487-602 78-186 (226)
488 PF04190 DUF410: Protein of un 30.0 5E+02 0.011 24.8 15.9 29 452-480 88-116 (260)
489 KOG1498 26S proteasome regulat 29.7 6E+02 0.013 25.7 18.2 195 450-671 48-261 (439)
490 PF10373 EST1_DNA_bind: Est1 D 29.4 99 0.0022 29.7 5.2 41 607-647 1-41 (278)
491 PF12796 Ank_2: Ankyrin repeat 29.3 1.9E+02 0.0041 21.5 5.8 13 60-72 6-18 (89)
492 PF01239 PPTA: Protein prenylt 29.2 1.1E+02 0.0024 17.4 3.4 27 608-634 3-29 (31)
493 PF05053 Menin: Menin; InterP 29.0 5.5E+02 0.012 27.4 10.1 55 619-693 315-369 (618)
494 PF13934 ELYS: Nuclear pore co 28.6 4.8E+02 0.01 24.2 12.9 118 459-584 81-201 (226)
495 PF12926 MOZART2: Mitotic-spin 28.6 2.6E+02 0.0057 21.2 6.1 63 112-176 7-69 (88)
496 PF12968 DUF3856: Domain of Un 28.4 3.3E+02 0.0071 22.2 7.0 60 557-616 57-128 (144)
497 cd08332 CARD_CASP2 Caspase act 28.2 2.4E+02 0.0052 21.6 5.9 59 28-94 22-80 (90)
498 PF15015 NYD-SP12_N: Spermatog 28.2 1.4E+02 0.003 30.2 5.5 73 560-634 233-311 (569)
499 PF09454 Vps23_core: Vps23 cor 28.0 1.5E+02 0.0033 21.0 4.4 46 483-529 6-51 (65)
500 COG5108 RPO41 Mitochondrial DN 27.9 2.3E+02 0.005 30.6 7.3 93 256-348 33-133 (1117)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-103 Score=883.79 Aligned_cols=686 Identities=33% Similarity=0.561 Sum_probs=670.3
Q ss_pred cchhchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHH
Q 038516 6 ENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNAL 85 (708)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 85 (708)
++...++..++.+|.+.+.+..|.++|+.+...|+. ++..++|.|+.+|+++|+++.|.++|++|++||+.+||++
T Consensus 83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~l 158 (857)
T PLN03077 83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS----LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVL 158 (857)
T ss_pred CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC----CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHH
Confidence 344567788888888888888899999988888887 8899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCC
Q 038516 86 IAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD 165 (708)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 165 (708)
|.+|++.|+ +++|+++|++|...|+.||..||++++++|+..+++..+.+++..|.+.|+.||..++++||.+|+++|+
T Consensus 159 i~~~~~~g~-~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGY-FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 038516 166 FESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS 245 (708)
Q Consensus 166 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (708)
++.|.++|+.|+.+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHH
Q 038516 246 NTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAII 325 (708)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 325 (708)
|..||..+|+.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+. |+.||..||+.++
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll 396 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVL 396 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHH
Q 038516 326 SATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIK 405 (708)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 405 (708)
.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.
T Consensus 397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~ 476 (857)
T PLN03077 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI 476 (857)
T ss_pred HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCCh
Q 038516 406 LFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDL 485 (708)
Q Consensus 406 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 485 (708)
+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|.
T Consensus 477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~ 554 (857)
T PLN03077 477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDV 554 (857)
T ss_pred HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCCh
Confidence 9999986 6999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhH-CCCCcChHHHHHHHHH
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKE-HSLIPGHKHYSCMVSL 564 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~ 564 (708)
.+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++|+++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 5999999999999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516 565 LSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM 644 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 644 (708)
|++.|++++|.+++++|+.. |+..+|.+|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|...|+|++|.++
T Consensus 635 l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v 713 (857)
T PLN03077 635 LGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV 713 (857)
T ss_pred HHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999999977 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhh
Q 038516 645 RRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVT 700 (708)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 700 (708)
++.|+++|++|+||+|||++++++|.|.+||.+||+.++||..|+.|..+|++..+
T Consensus 714 r~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~ 769 (857)
T PLN03077 714 RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769 (857)
T ss_pred HHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999998643
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-78 Score=661.35 Aligned_cols=519 Identities=31% Similarity=0.526 Sum_probs=509.7
Q ss_pred CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCC-CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHH
Q 038516 179 KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSG-VNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENAL 257 (708)
Q Consensus 179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 257 (708)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccch
Q 038516 258 LDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYG 337 (708)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 337 (708)
+++|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+. |..||..||..++.+|+..|..+.+
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHH
Confidence 999999999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCcc
Q 038516 338 KPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKC 417 (708)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 417 (708)
.+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHh
Q 038516 418 DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSH 497 (708)
Q Consensus 418 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 497 (708)
|..||+.++.+|++.|.++.|.+++..+.+.|+.|+..++++|+++|+++|++++|.++|++|.+||+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHH
Q 038516 498 YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAEN 576 (708)
Q Consensus 498 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 576 (708)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++|+++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875 999999999999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccC
Q 038516 577 LIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKE 656 (708)
Q Consensus 577 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 656 (708)
++++++.. |+..+|+.++.+|..+|+++.|+.+++++++++|++...|..|+++|.+.|+|++|.++++.|+++|++|.
T Consensus 484 ~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 484 MIRRAPFK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999988 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhh
Q 038516 657 PGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLV 699 (708)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 699 (708)
||+||+++++.+|.|.+||.+||+.++|+.+|.++..+|++..
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 605 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG 605 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999863
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-77 Score=669.04 Aligned_cols=574 Identities=25% Similarity=0.435 Sum_probs=558.3
Q ss_pred CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhH
Q 038516 76 KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTS 155 (708)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 155 (708)
.++..++|.++.++++.|+ +++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.+.+++..+.+.|..++..++|+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~-~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQ-LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 5677889999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHH
Q 038516 156 LLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCG 235 (708)
Q Consensus 156 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 235 (708)
|+.+|+++|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 038516 236 KVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLK 315 (708)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 315 (708)
.+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|+++|.++||++|.+|++.|++++|+++|++|... |+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~ 285 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVD 285 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHh
Q 038516 316 PDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHS 395 (708)
Q Consensus 316 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 395 (708)
||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||.+|.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHH
Q 038516 396 RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAES 475 (708)
Q Consensus 396 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 475 (708)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+.+|+++|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh
Q 038516 476 IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH 555 (708)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 555 (708)
+|++|.++|+.+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++.
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999986 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHH
Q 038516 556 KHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL--DPEDGTTHILLSNLYA 633 (708)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~ 633 (708)
.++++|+++|.++|++++|.++|+++ . ++..+|+.++.+|.++|+.++|.++++++.+. .|+. .+|..+..+|.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~--~-~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~ 600 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH--E-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACS 600 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc--C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHh
Confidence 99999999999999999999999998 3 89999999999999999999999999999874 5654 45888889999
Q ss_pred hcCCchHHHHHHHHHh-cCCCccC
Q 038516 634 ATGRWDCVAKMRRKMK-GSMLGKE 656 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~-~~~~~~~ 656 (708)
+.|++++|.++|+.|. +.|+.+.
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999998 5676543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-67 Score=576.13 Aligned_cols=520 Identities=16% Similarity=0.190 Sum_probs=475.7
Q ss_pred CCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcc-----cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHH
Q 038516 46 QSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLV-----SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTS 120 (708)
Q Consensus 46 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 120 (708)
++...|..++..|+++|++++|+++|++|++++.. .++.++.+|.+.|. .+.|+.+++.|.. ||..+|+.
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~-~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA-VKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC-HHHHHHHHHHcCC----CCHHHHHH
Confidence 56778899999999999999999999999866544 45677788999999 9999999999975 99999999
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCC----CCCcccHHHHHHHHhcCCC
Q 038516 121 LAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG----DKDAVAWNSIILGNFKNDK 196 (708)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~ 196 (708)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 999999999999999999999999999999999999999999999999999999998 4899999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCChhhHHHHHHhcccCCChHHHHHHH
Q 038516 197 MKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVII--SNTQVDLPLENALLDMYSKCSDTQTAFSVF 274 (708)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (708)
+++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 578999999999999999999999999999
Q ss_pred hccCC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516 275 TRIEN----PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD 350 (708)
Q Consensus 275 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (708)
+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99976 77899999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CchhHHhHHHHHHHhcCCChhHHHHHhhcC----CCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516 351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIA----EKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL 426 (708)
Q Consensus 351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 426 (708)
|+..+|+.||.+|++.|++++|.++|++|. .+|..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 5799999999999999999999999999999999999999999999
Q ss_pred HHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHH
Q 038516 427 SACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFM 506 (708)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (708)
.+|++.|+++.|.+++..|.+.|+.|+..+|++++.+|. +++++|.++.+.+.. |+. .......+..+.|..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS-GRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-cccccccchHHHHHH
Confidence 999999999999999999999999999999999997654 245666555443321 110 011112233467999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 507 VFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 507 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
+|++|.+.|+.||..||+.++.++++.+....+..+++.|...+..|+..+|++|++++.+. .++|..++++|
T Consensus 834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 99999999999999999999998889999999999999998888899999999999998432 47899999998
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.2e-67 Score=573.22 Aligned_cols=474 Identities=24% Similarity=0.395 Sum_probs=460.6
Q ss_pred CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHh
Q 038516 76 KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFEC-LRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQT 154 (708)
Q Consensus 76 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 154 (708)
.++..+|+.+|.++.+.|+ +++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGR-HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 4567799999999999999 999999999999864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhH
Q 038516 155 SLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVC 234 (708)
Q Consensus 155 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 234 (708)
.|+.+|+++|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 038516 235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL 314 (708)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 314 (708)
+.+++..+.+.|..+|..++++|+++|+++|++++|.++|+.|.++|+++||.+|.+|++.|++++|+++|++|.+. |+
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~ 321 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GV 321 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHH
Q 038516 315 KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGH 394 (708)
Q Consensus 315 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 394 (708)
.||..||+.++.+|++.|+++.|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||.||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hCCCCchhHHHHHHHhhHhcCCHHHH
Q 038516 395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK-TGHGVEMSVCGSLVDMYAKNGDLRAA 473 (708)
Q Consensus 395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 473 (708)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 69999999999999999999999999
Q ss_pred HHHHhhCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCC
Q 038516 474 ESIFSQVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSL 551 (708)
Q Consensus 474 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 551 (708)
.+++++|. .|+..+|++|+.+|...|+++.|..+++++.+ +.|+ ..+|..|+..|++.|++++|.++++.|.+.|+
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999996 79999999999999999999999999999976 5664 67899999999999999999999999999987
Q ss_pred Cc
Q 038516 552 IP 553 (708)
Q Consensus 552 ~p 553 (708)
..
T Consensus 560 ~k 561 (697)
T PLN03081 560 SM 561 (697)
T ss_pred cc
Confidence 54
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5e-65 Score=557.90 Aligned_cols=529 Identities=12% Similarity=0.160 Sum_probs=471.1
Q ss_pred hchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHH
Q 038516 9 CRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAA 88 (708)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 88 (708)
...+..++..|.+.|+++.|.++|+.|.+.|+.| ++...++.++.+|.+.|.+++|..+|+.|..|+..+||.+|.+
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~---~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD---MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3567788889999999999999999999988541 6788889999999999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhH
Q 038516 89 YSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFES 168 (708)
Q Consensus 89 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 168 (708)
|++.|+ ++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.||.+|++.|++++
T Consensus 447 ~~k~g~-~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 447 CASSQD-IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHhCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCC----CCcccHHHHHHHHhcCCChhHHHHHHHHHHh--CCCCCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 038516 169 AKRIFGLIGD----KDAVAWNSIILGNFKNDKMKEGLSLFGAMVG--SGVNPTQFSYSMLLNACSRMGNFVCGKVIHARV 242 (708)
Q Consensus 169 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 242 (708)
|.++|+.|.. ||..+||.+|.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999963 8999999999999999999999999999986 689999999999999999999999999999999
Q ss_pred HHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCH
Q 038516 243 IISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDE 318 (708)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 318 (708)
.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. |+.||.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCH
Confidence 9999999999999999999999999999999999985 89999999999999999999999999999999 999999
Q ss_pred hHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC----CCEeeehhhHHHH
Q 038516 319 YTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE----KDIVLWTEMIIGH 394 (708)
Q Consensus 319 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~ 394 (708)
.+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. ||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999964 6889999999999
Q ss_pred hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516 395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE 474 (708)
Q Consensus 395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 474 (708)
++.|++++|.+++.+|.+.|+.||..+|+.++..|.+ .++++..+.+.+...+. .......+..+.|.
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al 832 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS----------GRPQIENKWTSWAL 832 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc----------cccccccchHHHHH
Confidence 9999999999999999999999999999999977642 34555444333222110 01111123345677
Q ss_pred HHHhhCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516 475 SIFSQVL----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS 550 (708)
Q Consensus 475 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 550 (708)
.+|++|. .||..+|+.++.+++..+....+..+++.|...+..|+..+|++++.+|.+. .++|..+|++|.+.|
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 7777774 5777778777777777777777777777777777777777888888777432 357888888887777
Q ss_pred CCcChH
Q 038516 551 LIPGHK 556 (708)
Q Consensus 551 ~~p~~~ 556 (708)
+.|+..
T Consensus 911 i~p~~~ 916 (1060)
T PLN03218 911 VVPSVS 916 (1060)
T ss_pred CCCCcc
Confidence 777764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.5e-36 Score=345.93 Aligned_cols=622 Identities=13% Similarity=0.053 Sum_probs=299.7
Q ss_pred chHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--CC-cccHHHHH
Q 038516 10 RNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--RS-LVSYNALI 86 (708)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll 86 (708)
..+..+...+...|+++.|...++.+.+.... ++..+......+...|++++|...|+++.+ |+ ...+-.+.
T Consensus 228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 302 (899)
T TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAG 302 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 34455556666677777777777766655432 222333333344455666666666655432 11 11222223
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516 87 AAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF 166 (708)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 166 (708)
..+...|+ ++.|...+++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+...+.+.|++
T Consensus 303 ~~~~~~g~-~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 379 (899)
T TIGR02917 303 ASEYQLGN-LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF 379 (899)
T ss_pred HHHHHcCC-HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH
Confidence 33444555 555555555554432 1222334444444455555555555555554433 22344445555555555555
Q ss_pred hHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCC--------------------------------
Q 038516 167 ESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSG-------------------------------- 211 (708)
Q Consensus 167 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------------------- 211 (708)
++|.+.|+.+.. .+...|..+...+...|++++|.+.|+.+.+..
T Consensus 380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555555544332 122334444444444455555555554444332
Q ss_pred -CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHH
Q 038516 212 -VNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNS 287 (708)
Q Consensus 212 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 287 (708)
.+++..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+ .+..++..
T Consensus 460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 538 (899)
T TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA 538 (899)
T ss_pred hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 12233444444444555555555555555444432 22333444444444555555555555544432 23344444
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcC
Q 038516 288 MIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNG 367 (708)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 367 (708)
+...+.+.|+.++|..+++++... .+.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|.+.|
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 445555555555555555554443 23333444444455555555555555555544332 334445555555555555
Q ss_pred CChhHHHHHhhcCC---CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHH
Q 038516 368 DAESPQKVFMLIAE---KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQ 444 (708)
Q Consensus 368 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 444 (708)
++++|...|+.+.+ .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555555554432 133344445555555555555555555554431 22234444445555555555555555555
Q ss_pred HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 038516 445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT 522 (708)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 522 (708)
+.+.+ +.+...+..+...+.+.|++++|.+.|+.+. .|+..++..++.++.+.|++++|.+.++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 54433 2334444445555555555555555555543 2333444445555555555555555555555431 223344
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK 601 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 601 (708)
+..+...|...|++++|.+.|+++.+.. +++...+..++..+...|+ .+|+.+++++ ...+.++..+..++..+...
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 4444445555555555555555555421 2234445555555555555 4455555554 22222344445555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-35 Score=342.22 Aligned_cols=623 Identities=12% Similarity=0.016 Sum_probs=389.9
Q ss_pred hchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--C-CcccHHHH
Q 038516 9 CRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--R-SLVSYNAL 85 (708)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 85 (708)
...+..+...+...|+.+.|...+....+..+ .++.++..++..+...|++++|...++.+.+ | +...+...
T Consensus 193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (899)
T TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRP-----NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK 267 (899)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 34555667778889999999999999987654 3678889999999999999999999998753 2 22233333
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCC
Q 038516 86 IAAYSRDHDHAHLTFRLIDQMEFECLRPN-GLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCG 164 (708)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 164 (708)
...+...|+ ++.|+..|+++.+.+ |+ ...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|
T Consensus 268 ~~~~~~~~~-~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 343 (899)
T TIGR02917 268 ALVDFQKKN-YEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG 343 (899)
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 345567788 999999999998764 33 2334445566778999999999999998875 345677888899999999
Q ss_pred ChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhHHHHHHH
Q 038516 165 DFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNP-TQFSYSMLLNACSRMGNFVCGKVIHA 240 (708)
Q Consensus 165 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 240 (708)
++++|...++.+.. .+...++.+...+.+.|++++|.+.|+++.+. .| +...+..+...+...|++++|...+.
T Consensus 344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 421 (899)
T TIGR02917 344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE 421 (899)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999987754 35667888999999999999999999999875 34 44556667777778888888888888
Q ss_pred HHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 038516 241 RVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPD 317 (708)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 317 (708)
.+.+.... .......++..+.+.|++++|..+++.+.. .+..+|..+...+...|++++|...|+++.+. .+.+
T Consensus 422 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 498 (899)
T TIGR02917 422 TAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDF 498 (899)
T ss_pred HHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCc
Confidence 77765421 233344455556666666666666665543 24445555556666666666666666655543 2333
Q ss_pred HhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHH
Q 038516 318 EYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGH 394 (708)
Q Consensus 318 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 394 (708)
...+..+...+...|+++.|...++.+...+ +.+..++..+...+.+.|+.++|...++++... +...+..++..|
T Consensus 499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577 (899)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 3444445555555555555555555555443 334444555555555555555555555544321 223333444444
Q ss_pred hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhC----------------------------------cccHHHHHH
Q 038516 395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACAD----------------------------------LAILKQGEM 440 (708)
Q Consensus 395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------------------------~~~~~~a~~ 440 (708)
...|++++|..+++++.+.. +.+..++..+...+.. .|++++|..
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 44455555555444444321 2233344444444444 445555554
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038516 441 IHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR 517 (708)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 517 (708)
+++.+.+.. +.+...+..++..+...|++++|.++++.+. +++...+..+...+...|++++|...|+++... .
T Consensus 657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~ 733 (899)
T TIGR02917 657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--A 733 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 444444322 2233444444445555555555555554442 223444555555555566666666666665553 3
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516 518 PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS 596 (708)
Q Consensus 518 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 596 (708)
|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..++..|...|++++|...++++ ...++++..+..++.
T Consensus 734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 812 (899)
T TIGR02917 734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW 812 (899)
T ss_pred CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44445555555666666666666666665552 2233555666666666666666666666665 222245556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
.+...|+ .+|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus 813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666 556666777666667666666667777777777777777777666543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-26 Score=266.95 Aligned_cols=616 Identities=11% Similarity=0.038 Sum_probs=463.1
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--CCcccH------
Q 038516 11 NIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--RSLVSY------ 82 (708)
Q Consensus 11 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~------ 82 (708)
.+....+-+...++.+.|.+.+++++...+. ++.++..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-----~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~ 104 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-----NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT 104 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 3555566777788999999999999876543 788899999999999999999999999863 433222
Q ss_pred -----------HHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHhccccchHHHHHHHHHHHHhCCCCch
Q 038516 83 -----------NALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGL-TFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDT 150 (708)
Q Consensus 83 -----------~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 150 (708)
-.+.+.+.+.|+ +++|+..|+.+.+.. +|+.. ............++.++|...++.+.+.. +.+.
T Consensus 105 ~~~~~~~~~~~l~~A~ll~~~g~-~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~ 181 (1157)
T PRK11447 105 MLLSTPEGRQALQQARLLATTGR-TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT 181 (1157)
T ss_pred HHhcCCchhhHHHHHHHHHhCCC-HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence 122335778899 999999999998653 33332 11112222335689999999999999886 4466
Q ss_pred hHHhHHHHHhHhCCChhHHHHHhccCCCCCc------cc-----------------HHHHHHHHhcCCChhHHHHHHHHH
Q 038516 151 CVQTSLLGMYSNCGDFESAKRIFGLIGDKDA------VA-----------------WNSIILGNFKNDKMKEGLSLFGAM 207 (708)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~-----------------~~~li~~~~~~g~~~~A~~~~~~m 207 (708)
..+..+...+...|+.++|++.|+++..... .. +...+..+-.......|...+..+
T Consensus 182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~ 261 (1157)
T PRK11447 182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ 261 (1157)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 7888999999999999999999988753211 01 111122222222344555556555
Q ss_pred HhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CCh---
Q 038516 208 VGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDL--- 282 (708)
Q Consensus 208 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--- 282 (708)
......|+... ......+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++..+ |+.
T Consensus 262 ~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 262 QKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 44322333221 223455678899999999999999874 44778899999999999999999999998865 322
Q ss_pred hHHH------------HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516 283 VSWN------------SMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD 350 (708)
Q Consensus 283 ~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (708)
..|. .....+.+.|++++|...|++..+. .+.+...+..+...+...|++++|.+.|+.+.+.. +
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p 416 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-P 416 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 1222 2244677899999999999999986 34566677788899999999999999999999875 4
Q ss_pred CchhHHhHHHHHHHhcCCChhHHHHHhhcCCCC------------EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC
Q 038516 351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD------------IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD 418 (708)
Q Consensus 351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 418 (708)
.+...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+
T Consensus 417 ~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~ 493 (1157)
T PRK11447 417 GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPG 493 (1157)
T ss_pred CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 55667777777774 467899999988765421 223455677788999999999999999876 344
Q ss_pred -HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC----Ch--------
Q 038516 419 -NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP----DL-------- 485 (708)
Q Consensus 419 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-------- 485 (708)
...+..+...+...|++++|...++.+.+.. +.++..+..+...+...|+.++|...++.+... +.
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 4566677888999999999999999988654 334555555666677899999999999988532 11
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHH
Q 038516 486 -KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVS 563 (708)
Q Consensus 486 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 563 (708)
..+..+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .| +...+..++.
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~ 645 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIE 645 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 1123456778899999999999872 2445566777888999999999999999999984 45 4778889999
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcC
Q 038516 564 LLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT------THILLSNLYAATG 636 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g 636 (708)
.|...|++++|++.++.+....| +...+..+..++...|+.++|.+.+++++...|+++. .+..++.++...|
T Consensus 646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G 725 (1157)
T PRK11447 646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG 725 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence 99999999999999999854433 5667788888899999999999999999998876553 5667899999999
Q ss_pred CchHHHHHHHHHhc
Q 038516 637 RWDCVAKMRRKMKG 650 (708)
Q Consensus 637 ~~~eA~~~~~~~~~ 650 (708)
++++|...+++...
T Consensus 726 ~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 726 QPQQALETYKDAMV 739 (1157)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998753
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=8e-26 Score=260.49 Aligned_cols=589 Identities=11% Similarity=0.037 Sum_probs=433.1
Q ss_pred hhHHHHHHhccCChHHHHHHhhcCC--C-CCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchH---------
Q 038516 51 YNNVLSMYGRCGSIRDARQVFDEIP--K-RSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTF--------- 118 (708)
Q Consensus 51 ~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--------- 118 (708)
.-..++.....++.+.|.+.++++. . .++..+..++..+.+.|+ .++|...+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~-~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGD-SDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence 4455677788999999999999864 3 356678888889999999 999999999998864 544332
Q ss_pred --------HHHHHHhccccchHHHHHHHHHHHHhCCCCchhH-HhHHHHHhHhCCChhHHHHHhccCCC--C-CcccHHH
Q 038516 119 --------TSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV-QTSLLGMYSNCGDFESAKRIFGLIGD--K-DAVAWNS 186 (708)
Q Consensus 119 --------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ 186 (708)
....+.+...|++++|.+.++.+.+... |+... ...+.......|+.++|++.|+.+.. | +...+..
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~ 186 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT 186 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2233457788999999999999987653 33221 11222223346999999999998875 3 4557788
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhCCCC----------------CCcc---hHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 038516 187 IILGNFKNDKMKEGLSLFGAMVGSGVN----------------PTQF---SYSMLLNACSRMGNFVCGKVIHARVIISNT 247 (708)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 247 (708)
+...+...|+.++|++.|+++...... ++.. .+...+..+-.......+...+........
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 889999999999999999998753210 0000 011111111222223445555555443322
Q ss_pred CCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHH---
Q 038516 248 QVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTF--- 321 (708)
Q Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~--- 321 (708)
.|+.. .......+...|++++|+..|++..+ | +...+..+..+|.+.|++++|+..|++..+...-.+....+
T Consensus 267 dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 33322 12335567788999999999998865 3 67788899999999999999999999988752222221111
Q ss_pred ---------HHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehh
Q 038516 322 ---------AAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTE 389 (708)
Q Consensus 322 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 389 (708)
......+...|++++|...++.++... +.+...+..+..++...|++++|++.|+++.+. +...+..
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 122345678999999999999999875 556778888999999999999999999988753 3445556
Q ss_pred hHHHHhcCCChHHHHHHHHHHhHCCCc--------cCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038516 390 MIIGHSRMGDGECAIKLFCKMCREGLK--------CDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV 461 (708)
Q Consensus 390 li~~~~~~~~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (708)
+...|. .++.++|...++.+...... .....+......+...|++++|.+.++...+.. +.++..+..+.
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA 502 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA 502 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 666664 46789999988776432110 001233445566778999999999999988765 34567778899
Q ss_pred HhhHhcCCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---------HHHHHHHH
Q 038516 462 DMYAKNGDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI---------TFLSLLSA 529 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~ 529 (708)
..|.+.|++++|...|+++. .| +...+..+...+...|+.++|+..++++......++.. .+..+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999874 23 55566666666778899999999998875433222221 12344567
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
+...|+.++|.++++. .+++...+..+...+.+.|++++|++.++++ ...|.+...+..++..+...|+.++|+
T Consensus 583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8899999999999872 2345566778999999999999999999998 334456888999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
..++++++..|+++..+..++.++...|++++|.++++++....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999987654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.1e-22 Score=223.45 Aligned_cols=564 Identities=9% Similarity=-0.017 Sum_probs=342.5
Q ss_pred ccCChHHHHHHhhcCC--CC-CcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHH
Q 038516 60 RCGSIRDARQVFDEIP--KR-SLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSL 136 (708)
Q Consensus 60 ~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 136 (708)
..|++++|+..|+... .| +..++..+...|.+.|+ .++|+..+++..+. .|+...|..++..+ ++.+.|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 3466666666666543 22 23445555666666666 66666666666553 34434333333222 55556666
Q ss_pred HHHHHHHhCCCCchhHHhHHHHH--------hHhCCChhHHHHHhccCCC-CCcccHHHH-HHHHhcCCChhHHHHHHHH
Q 038516 137 LHAQVIKYGSSEDTCVQTSLLGM--------YSNCGDFESAKRIFGLIGD-KDAVAWNSI-ILGNFKNDKMKEGLSLFGA 206 (708)
Q Consensus 137 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~-~~~~~~~~l-i~~~~~~g~~~~A~~~~~~ 206 (708)
+++++.+... -+..++..+... |.+.+...++++ .+.... |+..+.... ...|.+.|++++|++++.+
T Consensus 130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 6666665542 222333333333 555544444444 221111 122222222 5566666666666666666
Q ss_pred HHhCCCCCCcchHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC-----C
Q 038516 207 MVGSGVNPTQFSYSMLLNACSR-MGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN-----P 280 (708)
Q Consensus 207 m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~ 280 (708)
+.+.+.. +..-...+-.++.. .++ +.+..++.. .+..+......+.+.|.+.|+.++|.++++++.. |
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 6665321 22223334444444 234 444444332 2224556666666666666666666666665542 1
Q ss_pred Chh------------------------------HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC
Q 038516 281 DLV------------------------------SWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA 330 (708)
Q Consensus 281 ~~~------------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 330 (708)
+.. ..-.++..+.+.++++-+.++. ...|.......-..+...
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL-------ATLPANEMLEERYAVSVA 354 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh-------cCCCcchHHHHHHhhccc
Confidence 000 1112255666777777555442 233443332111122223
Q ss_pred CCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC--CE----eeehhhHHHHhcCCC---hH
Q 038516 331 LPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK--DI----VLWTEMIIGHSRMGD---GE 401 (708)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~----~~~~~li~~~~~~~~---~~ 401 (708)
.+...++...+..|.+.. +-+.....-+.-...+.|+.++|..+|+..... +. ..-+-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 345555555555555442 334444444445556677777777777766542 11 122244555555444 22
Q ss_pred HHHHH----------------------HHHHhH-CCCcc---CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516 402 CAIKL----------------------FCKMCR-EGLKC---DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS 455 (708)
Q Consensus 402 ~A~~~----------------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 455 (708)
++..+ +..... .+..| +...+..+..++.. ++.++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 22222 222211 12223 34455555555544 78888998777766554 4444
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhc
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSH 532 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~ 532 (708)
....+...+...|++++|...|+++. .|+...+..+..++.+.|++++|...+++..+. .|+.. .+..+...+..
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence 33344555578999999999999875 355566777888899999999999999999985 45443 33334445556
Q ss_pred cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038516 533 SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAA 611 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 611 (708)
.|++++|...+++..+ +.|+...+..++.++.+.|++++|+..++++ ...|.+...+..+..++...|+.++|+..+
T Consensus 589 ~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 589 PGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7999999999999997 5677888999999999999999999999998 344346788888988999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 612 EQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 612 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
+++++++|+++.++..++.+|...|++++|+..+++..+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887653
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=6.7e-22 Score=217.15 Aligned_cols=602 Identities=10% Similarity=-0.026 Sum_probs=412.4
Q ss_pred hccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--CCcccHHHHHHHHHhCCCChH
Q 038516 20 ASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--RSLVSYNALIAAYSRDHDHAH 97 (708)
Q Consensus 20 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~ 97 (708)
...|+...|...+...++..+. ++.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ ++ ..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~-----n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~-~~ 125 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPD-----NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PV-EV 125 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---cc-Ch
Confidence 3348888999999988887765 588888999999999999999999988753 3333444444333 56 77
Q ss_pred HHHHHHHHHHHcCCCCCc-chHHHHHHHh-----ccccchHHHHHHHHHHHHhCCCCchhHHhHH-HHHhHhCCChhHHH
Q 038516 98 LTFRLIDQMEFECLRPNG-LTFTSLAQAV-----SLLEDQLMGSLLHAQVIKYGSSEDTCVQTSL-LGMYSNCGDFESAK 170 (708)
Q Consensus 98 ~a~~~~~~m~~~g~~p~~-~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~ 170 (708)
+|..+++++.... |+. ..+..+.... .+..+.+++.+.++ .......|+..+.... ...|.+.|++++|+
T Consensus 126 kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 126 KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 8888888887753 433 3333333330 11233355555555 3333344445544444 77777788888888
Q ss_pred HHhccCCCC---CcccHHHHHHHHhc-CCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 038516 171 RIFGLIGDK---DAVAWNSIILGNFK-NDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISN 246 (708)
Q Consensus 171 ~~~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (708)
+.+..+.+. +......|-.+|.. .++ +.+..+++. .++-+......+...+.+.|+.++|..++.++...-
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 777776653 22224444455555 244 666666442 223456666777777777777777777766654321
Q ss_pred CC-CCh------------------------------hhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHH--HH
Q 038516 247 TQ-VDL------------------------------PLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAG--YM 293 (708)
Q Consensus 247 ~~-~~~------------------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~--~~ 293 (708)
.. |.. .....++..+.+.+.++.+.++.. ..|.... ..++. ..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~r~~~~~ 353 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA--TLPANEM--LEERYAVSV 353 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCCcchH--HHHHHhhcc
Confidence 10 111 112234677888999998877744 2232222 22322 22
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHH-C-CCCchhHHhHHHHHHHhcCCChh
Q 038516 294 ENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKT-G-YDSSVFVGTTLLNMYFKNGDAES 371 (708)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~ 371 (708)
..+...++.+.++.|.+. .+-+......+--.....|+.++|.+++...... + -..+....+.|+..|.+.+.+..
T Consensus 354 ~~~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccCchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 346677777777777765 3445555555555566788899999998887662 1 12344455577888887766333
Q ss_pred HHHHHh----------------------------hcCC---C--CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC
Q 038516 372 PQKVFM----------------------------LIAE---K--DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD 418 (708)
Q Consensus 372 A~~~~~----------------------------~~~~---~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 418 (708)
..+... .... . +...|..+..++.. ++.++|+..+.+.... .|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 222211 1111 1 33455666666666 8889999988887765 466
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC---ChHHHHHHHHHH
Q 038516 419 NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP---DLKCWNALLGGY 495 (708)
Q Consensus 419 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~ 495 (708)
......+..++...|++++|...++.+... +|+...+..+..++.+.|++++|...|+..... +...+..+....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 655444455556899999999999987554 344445567778889999999999999988642 223333333444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 574 (708)
...|++++|...+++..+ +.|+...+..+..++.+.|++++|...+++..+ ..|+ ...+..+...+...|++++|
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 556999999999999998 478878888888999999999999999999998 4564 67788899999999999999
Q ss_pred HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
++.++++ ...|.++..+..+..++...|++++|+..++++++++|+++.+....+++.....+++.|.+.+++.-..++
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999998 334357889999999999999999999999999999999999999999999999999999998876655443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.3e-21 Score=187.17 Aligned_cols=443 Identities=14% Similarity=0.092 Sum_probs=242.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcc
Q 038516 184 WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ-FSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYS 262 (708)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (708)
...|..-..+.|++++|.+.-...-.. .|+. ...-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence 344556666778888887765444332 2222 22222223334444444333222222222 1223455666666666
Q ss_pred cCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHcCCCCccchH
Q 038516 263 KCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAA-IISATSALPASAYGK 338 (708)
Q Consensus 263 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~ 338 (708)
..|++++|...++.+.+ ..+..|..+..++...|+.+.|...|.+..+ +.|+.....+ +-......|.+.+|.
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhH
Confidence 66666666666666654 2445666666666666666666666666653 3454433322 222223355566666
Q ss_pred HHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCE---eeehhhHHHHhcCCChHHHHHHHHHHhHCCC
Q 038516 339 PLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDI---VLWTEMIIGHSRMGDGECAIKLFCKMCREGL 415 (708)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 415 (708)
.-+.+.+... +.-..+|+.|...+...|+...|...|++...-|+ ..|-.|...|-..+.+++|+..+.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 6555555443 22244555566666666666666666666554332 34555555666666666666666555432
Q ss_pred ccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHH
Q 038516 416 KCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNAL 491 (708)
Q Consensus 416 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 491 (708)
+|+. ..+..+...|...|.++.|...+++..+.. +.-+..|+.|..++-..|++.+|...|++.+ .....+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4443 344444445556666666666666555432 2223456666666666666666666666553 2234455666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcC
Q 038516 492 LGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAG 569 (708)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 569 (708)
...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|++.+. +.|+ ...|+.++..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 6666666666666666666665 4454 33455666666666666666666666654 5555 455666666666666
Q ss_pred CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516 570 LLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC 640 (708)
Q Consensus 570 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 640 (708)
+...|.+.+.++ ...|.-.+..+.|...|...|+..+|++.|+.++++.|+.+.+|-.|.-++---.+|.+
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 666666666665 22212345556666666666666666666666666666666666655555444444444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=7e-21 Score=184.93 Aligned_cols=424 Identities=14% Similarity=0.117 Sum_probs=330.4
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcC
Q 038516 219 YSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMEN 295 (708)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 295 (708)
...|..-..+.|++++|++.-..+-..+ +.+....-.+-..+....+.+....--....+ .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3344555567788888888766554442 23333344444556666666655443333322 3456888899999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHH
Q 038516 296 GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKV 375 (708)
Q Consensus 296 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 375 (708)
|+.++|+.+++.+.+. .+-....|..+..++...|+.+.|.+.|.+.++.+ |....+.+.+...+...|++++|...
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999875 33356678888889999999999999998887764 32334445566667778999999888
Q ss_pred HhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC
Q 038516 376 FMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHG 451 (708)
Q Consensus 376 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 451 (708)
+.+..+. =.+.|+.|...+-..|+...|+..|++..+. .|+. ..|..+-..+...+.++.|...+....... +
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 8776553 3468999999999999999999999988764 4443 467788888999999999988887766543 3
Q ss_pred CchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 038516 452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLL 527 (708)
Q Consensus 452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll 527 (708)
.....+..+...|...|.+|-|+..|++.+ +|+ ...|+.|..++...|++.+|++.+.+.+. +.|+ ....+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 356677788888999999999999999885 454 56899999999999999999999999988 4666 45688888
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR 605 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 605 (708)
..+...|.+++|..+|....+ +.|. ....+.|+..|..+|++++|...++++ ...|.-...+..++..|...|+.+
T Consensus 362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 899999999999999998887 6676 567888999999999999999999887 555334778899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 606 MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
.|.+.+.+++.++|.-+.++..|+.+|-..|+..+|+.-++...+..+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999888876543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1e-18 Score=189.49 Aligned_cols=250 Identities=18% Similarity=0.068 Sum_probs=201.5
Q ss_pred CCChHHHHHHHHHHhHCC-CccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516 397 MGDGECAIKLFCKMCREG-LKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE 474 (708)
Q Consensus 397 ~~~~~~A~~~~~~m~~~g-~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 474 (708)
.+++++|.+.|++..+.+ ..|+. ..+..+...+...|++++|...++...+.. +.....+..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467889999999988765 33433 456666666778999999999999887653 334567778888899999999999
Q ss_pred HHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516 475 SIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHS 550 (708)
Q Consensus 475 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 550 (708)
..|+... +.+...|..+...+...|++++|+..|++.++. .|+ ...+..+...+.+.|++++|+..|++..+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 9999875 346788999999999999999999999999985 564 55677777789999999999999999987
Q ss_pred CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-HH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 551 LIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-IE-------LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 551 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
..|+ ...+..++.++...|++++|.+.++++....|+ .. .+...+..+...|++++|...++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3454 678889999999999999999999997222121 11 12222223444799999999999999999999
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 622 GTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
...+..++++|...|++++|++.+++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988653
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.4e-17 Score=171.16 Aligned_cols=578 Identities=13% Similarity=0.087 Sum_probs=413.6
Q ss_pred hHHHHHHhhcCCC--CCcccHHHHHHHHH--hCCCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHhccccchHHHHHH
Q 038516 64 IRDARQVFDEIPK--RSLVSYNALIAAYS--RDHDHAHLTFRLIDQMEFE--CLRPNGLTFTSLAQAVSLLEDQLMGSLL 137 (708)
Q Consensus 64 ~~~A~~~~~~~~~--~~~~~~~~ll~~~~--~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 137 (708)
++.|.+.|....+ |+-+ .-.+..++. ..++ +..|+.+|...... ..+||... .+-..+.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKD-YRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence 5888888887653 3222 122233322 2456 99999999996553 33444432 223445688899999998
Q ss_pred HHHHHHhCCCCchhHHhHHHHHhHhC---CChhHHHHHhccCC---CCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCC
Q 038516 138 HAQVIKYGSSEDTCVQTSLLGMYSNC---GDFESAKRIFGLIG---DKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSG 211 (708)
Q Consensus 138 ~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 211 (708)
|...++... -++.++-.|--.-... ..+..+..++...- ..|+++.+.|.+.+.-.|+++.++.+...+....
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 888888753 2222222222222222 33455555554432 3578899999999999999999999999988653
Q ss_pred CC--CCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHH
Q 038516 212 VN--PTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWN 286 (708)
Q Consensus 212 ~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~ 286 (708)
.. .-...|-.+.+++-..|++++|...|.+..+....--+..+-.+..+|.+.|+++.+...|+.+.. | +..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 11 123558889999999999999999998887764332244566788999999999999999999875 4 445666
Q ss_pred HHHHHHHcCC----CchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHH----HHHHHCCCCchhHHhH
Q 038516 287 SMIAGYMENG----NGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHA----LVIKTGYDSSVFVGTT 358 (708)
Q Consensus 287 ~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~ 358 (708)
.|...|+..+ ..++|..++.+.... .+.|...|..+...+.....+.. ..++. .+...+.++.+.+.|.
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 6667776664 567888888887775 46677788777777665544433 55544 4455676788899999
Q ss_pred HHHHHHhcCCChhHHHHHhhcCCC-------CEe------eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHH-HHH
Q 038516 359 LLNMYFKNGDAESPQKVFMLIAEK-------DIV------LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFA-LSG 424 (708)
Q Consensus 359 li~~~~~~g~~~~A~~~~~~~~~~-------~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~ 424 (708)
+...+...|++++|...|+..... +.. +--.+...+-..++++.|.+.|..+.+. .|.-+. |..
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999876543 221 1122445556678999999999999876 455543 333
Q ss_pred HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHh--
Q 038516 425 ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSH-- 497 (708)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~-- 497 (708)
++......+...+|...+....... ..++..++.+...+.+...+..|.+-|..+. .+|..+.-+|...|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 3323334567788888888776643 4455566667778888888888888665553 3465555556665442
Q ss_pred ----------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh
Q 038516 498 ----------YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR 567 (708)
Q Consensus 498 ----------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 567 (708)
.+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|....+... -...+|-.++.+|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence 245678999999998852 23677778888889999999999999999998632 234568889999999
Q ss_pred cCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc---------
Q 038516 568 AGLLDEAENLIAES---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT--------- 635 (708)
Q Consensus 568 ~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------- 635 (708)
+|+|..|.++|+.. -....+..++..|..++...|.+.+|...+..+..+.|.++.....++-+..+.
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k 772 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK 772 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence 99999999999887 223358999999999999999999999999999999999999877777665543
Q ss_pred ----------CCchHHHHHHHHHhcCCCc
Q 038516 636 ----------GRWDCVAKMRRKMKGSMLG 654 (708)
Q Consensus 636 ----------g~~~eA~~~~~~~~~~~~~ 654 (708)
+..++|.++|..+...+-+
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5678889999999776543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2.5e-17 Score=181.83 Aligned_cols=390 Identities=10% Similarity=-0.017 Sum_probs=216.6
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCch
Q 038516 223 LNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGE 299 (708)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 299 (708)
+......|+.++|..++....... +.+...+..+..++...|++++|..+|++..+ .+...+..+...+...|+++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 333444444444444444443311 22233344444445555555555555554322 22334444555555555555
Q ss_pred HHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhc
Q 038516 300 KAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLI 379 (708)
Q Consensus 300 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 379 (708)
+|+..+++..+. .+.+.. +..+..++...|+.+.|...++.+.+.. |.+..++..+..++...+..+.|...++..
T Consensus 101 eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 101 EALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 555555555543 222333 4444555555555555555555555543 334444455566666666666666666655
Q ss_pred CCCCEe--------eehhhHHHH-----hcCCCh---HHHHHHHHHHhHC-CCccCHH-HHHHHHHHHhCcccHHHHHHH
Q 038516 380 AEKDIV--------LWTEMIIGH-----SRMGDG---ECAIKLFCKMCRE-GLKCDNF-ALSGALSACADLAILKQGEMI 441 (708)
Q Consensus 380 ~~~~~~--------~~~~li~~~-----~~~~~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 441 (708)
.. ++. ....++... ...+++ ++|++.++.+.+. ...|+.. .+.
T Consensus 177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~------------------ 237 (765)
T PRK10049 177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ------------------ 237 (765)
T ss_pred CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH------------------
Confidence 44 111 000001000 111112 3344444444322 1111110 000
Q ss_pred HHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCC---h-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038516 442 HSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPD---L-KCWNALLGGYSHYGMAEEAFMVFEVILEHGLR 517 (708)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 517 (708)
......+.++...|++++|+..|+.+.+.+ + ..-..+..+|...|++++|+..|+++.+. .
T Consensus 238 -------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~ 302 (765)
T PRK10049 238 -------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--P 302 (765)
T ss_pred -------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--C
Confidence 000001223345577777777777775321 1 11122456777778888888888877653 2
Q ss_pred CC-----hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC-----------CCcC---hHHHHHHHHHHHhcCCHHHHHHHH
Q 038516 518 PD-----EITFLSLLSACSHSGLVERGKILWNQMKEHS-----------LIPG---HKHYSCMVSLLSRAGLLDEAENLI 578 (708)
Q Consensus 518 p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~ 578 (708)
|. ......+..++...|++++|.++++.+.+.. -.|+ ...+..++..+...|++++|++.+
T Consensus 303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l 382 (765)
T PRK10049 303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA 382 (765)
T ss_pred CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 32 1234455556777788888888877776531 1122 224456677888888888888888
Q ss_pred HhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 579 AES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 579 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+++ ...|.+...+..++..+...|+.++|++.++++++++|++...+..++.++...|++++|..+++.+.+.
T Consensus 383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 887 3333457778888888888888888888888888888888888888888888888888888888887654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=6.1e-19 Score=181.77 Aligned_cols=299 Identities=14% Similarity=0.116 Sum_probs=212.3
Q ss_pred HHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC---HHHHHHHHHHHhCcccHH
Q 038516 363 YFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD---NFALSGALSACADLAILK 436 (708)
Q Consensus 363 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~ 436 (708)
+...|++++|...|.++.+. +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34455555555555555432 223445555566666666666666666655432221 134555566666667777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC------hHHHHHHHHHHHhcCChHHHHHHH
Q 038516 437 QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD------LKCWNALLGGYSHYGMAEEAFMVF 508 (708)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~ 508 (708)
.|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+.+ |+ ...|..+...+...|++++|...|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777776665542 34556677777788888888888888877742 21 124566777888999999999999
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC
Q 038516 509 EVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR 587 (708)
Q Consensus 509 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 587 (708)
+++.+. .|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|...|++++|...++++....|+
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999885 444 55677777889999999999999999987432222456788999999999999999999998443467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCCchHHHHHHHHHhcCCCccCCceeEEEe
Q 038516 588 IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA--TGRWDCVAKMRRKMKGSMLGKEPGLSWIEA 664 (708)
Q Consensus 588 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~ 664 (708)
...+..++..+...|+.++|...++++++..|++......+...+.. .|+.++|..+++++.+++++..|......+
T Consensus 282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~c 360 (389)
T PRK11788 282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNC 360 (389)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCC
Confidence 66778888889999999999999999999999987644334333322 569999999999999999999998554433
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=1.6e-17 Score=179.32 Aligned_cols=351 Identities=10% Similarity=-0.019 Sum_probs=268.4
Q ss_pred cCCChHHHHHHHhccCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccc
Q 038516 263 KCSDTQTAFSVFTRIEN------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAY 336 (708)
Q Consensus 263 ~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 336 (708)
+..+++.-.-+|...++ .+......++..+.+.|++++|..+++..... .+-+...+..+..++...|+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHH
Confidence 44555555555555443 12233445667788889999999999888875 34444455556666777899999
Q ss_pred hHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHC
Q 038516 337 GKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCRE 413 (708)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 413 (708)
|...++.+.... |.+...+..+...+...|++++|...+++.... +...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999988875 566778888889999999999999999887652 4567788888999999999999999988765
Q ss_pred CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHH
Q 038516 414 GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNA 490 (708)
Q Consensus 414 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 490 (708)
...+.. .+.. +..+...|++++|...++.+.+....++......+...+...|++++|+..|++.. +.+...+..
T Consensus 174 ~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 VPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred CCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 432222 2222 33467789999999999887766433444455556778889999999999999875 346778888
Q ss_pred HHHHHHhcCChHH----HHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHH
Q 038516 491 LLGGYSHYGMAEE----AFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSL 564 (708)
Q Consensus 491 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 564 (708)
+...+...|++++ |...|+++.+. .|+ ...+..+...+...|++++|...+++..+ ..|+ ...+..++.+
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~ 327 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999986 89999999984 565 56688888899999999999999999987 3454 5567778999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 565 LSRAGLLDEAENLIAESPYSEIRI-ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
|.+.|++++|...++++....|+. ..+..+..++...|+.++|...++++++.+|++.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999885443554 3344456678889999999999999999999875
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.8e-16 Score=171.99 Aligned_cols=439 Identities=9% Similarity=-0.026 Sum_probs=291.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhccc
Q 038516 184 WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSK 263 (708)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (708)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34455677788888888888888776 45677778888888888888888888888887764 3356677778888888
Q ss_pred CCChHHHHHHHhccCCC---ChhHHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCCHhHHHHHHHHHcCCCCccchHH
Q 038516 264 CSDTQTAFSVFTRIENP---DLVSWNSMIAGYMENGNGEKAVDMFVALRRM-SLLKPDEYTFAAIISATSALPASAYGKP 339 (708)
Q Consensus 264 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 339 (708)
.|++++|...|..+... +......++..+.. ..+.......... ....|............ .......
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcchh
Confidence 88888888776554321 11111111111111 1222222222221 11112222221111111 1111111
Q ss_pred HHHHHHHHCCCCch-hHHhHHHHHH---HhcCCChhHHHHHhhcCCC------CEeeehhhHHHHhcCCChHHHHHHHHH
Q 038516 340 LHALVIKTGYDSSV-FVGTTLLNMY---FKNGDAESPQKVFMLIAEK------DIVLWTEMIIGHSRMGDGECAIKLFCK 409 (708)
Q Consensus 340 ~~~~~~~~~~~~~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~ 409 (708)
-+..... ..+.. ..+..+...+ ...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111000 01110 1111111111 2346788888888877642 234577778888889999999999999
Q ss_pred HhHCCCccC-HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCCh
Q 038516 410 MCREGLKCD-NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDL 485 (708)
Q Consensus 410 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 485 (708)
..+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++.+ +.+.
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 8865 444 4467777777888999999999999887764 4467788889999999999999999999885 3456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh--------H
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH--------K 556 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--------~ 556 (708)
..+..+...+.+.|++++|+..|++.++. .|+ ...++.+...+...|++++|++.|++..+. .|+. .
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~ 509 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHH
Confidence 77888899999999999999999999985 554 667888888999999999999999998874 2321 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
.++.....+...|++++|.++++++ ...+.+...+..++..+...|++++|...+++++++.+.....+. .
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~--------a 581 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ--------A 581 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH--------H
Confidence 1222223344579999999999987 334334567888999999999999999999999999876544222 2
Q ss_pred CCchHHHHHHHHHhc
Q 038516 636 GRWDCVAKMRRKMKG 650 (708)
Q Consensus 636 g~~~eA~~~~~~~~~ 650 (708)
..+.+|.++....++
T Consensus 582 ~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 582 ISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHHHHHH
Confidence 235566666554443
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=4.5e-18 Score=175.38 Aligned_cols=290 Identities=18% Similarity=0.140 Sum_probs=140.8
Q ss_pred HHhcCCChhHHHHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhhHHHHHHhcccCC
Q 038516 190 GNFKNDKMKEGLSLFGAMVGSGVNP-TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVD---LPLENALLDMYSKCS 265 (708)
Q Consensus 190 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 265 (708)
.+...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 445667777777777777764 33 334566666666667777777777666655321111 123444455555555
Q ss_pred ChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHH
Q 038516 266 DTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHA 342 (708)
Q Consensus 266 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 342 (708)
++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------------- 170 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL------------------------------- 170 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-------------------------------
Confidence 55555555555443 23344445555555555555555555554433
Q ss_pred HHHHHCCCCc----hhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCC
Q 038516 343 LVIKTGYDSS----VFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGL 415 (708)
Q Consensus 343 ~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 415 (708)
+..+. ...+..+...+.+.|++++|...|+++.+. +...+..+...+.+.|++++|.+.|+++...+
T Consensus 171 -----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 244 (389)
T PRK11788 171 -----GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD- 244 (389)
T ss_pred -----cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 21110 011223334444444444444444443321 12233344455555555555555555554432
Q ss_pred ccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHH
Q 038516 416 KCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLG 493 (708)
Q Consensus 416 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~ 493 (708)
|+ ....+++.++.+|.+.|++++|...++++. .|+...+..++.
T Consensus 245 -p~---------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~ 290 (389)
T PRK11788 245 -PE---------------------------------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQ 290 (389)
T ss_pred -hh---------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 11 112233344444555555555555554442 234344444555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc---cCcHHHHHHHHHHhhHCCCCcC
Q 038516 494 GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH---SGLVERGKILWNQMKEHSLIPG 554 (708)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~p~ 554 (708)
.+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|+
T Consensus 291 ~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 291 LLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 555555555555555555542 4555555544443332 3355555555555555444443
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=5.1e-15 Score=152.54 Aligned_cols=367 Identities=14% Similarity=0.080 Sum_probs=184.0
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhH
Q 038516 280 PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL-KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTT 358 (708)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 358 (708)
.+++..+.|...|.-.|+++.++.+...+....-. ..-...|-.+.+++-..|+++.|..+|-+..+..-......+..
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 34555555555555566666666655555544100 01123355555556666666666665555444331111233344
Q ss_pred HHHHHHhcCCChhHHHHHhhcCCCC---EeeehhhHHHHhcCC----ChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhC
Q 038516 359 LLNMYFKNGDAESPQKVFMLIAEKD---IVLWTEMIIGHSRMG----DGECAIKLFCKMCREGLKCDNFALSGALSACAD 431 (708)
Q Consensus 359 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 431 (708)
|..+|.+.|+++.+...|+.+.+.. ..+...|...|...+ ..+.|..++.+..+.- +.|...|..+-..+..
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 5566666666666666666554432 223333333343332 2344444444443321 2233334333333322
Q ss_pred cccHHHHHHHHHHH----HHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-------CCCh------HHHHHHHHH
Q 038516 432 LAILKQGEMIHSQA----EKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-------HPDL------KCWNALLGG 494 (708)
Q Consensus 432 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~------~~~~~li~~ 494 (708)
++...+...+..+ ...+..+.+...|.+.......|++++|...|.... .+|. .+-..+...
T Consensus 427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 2333334443332 234445666666666666666666666666665542 1121 122223444
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHH
Q 038516 495 YSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDE 573 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 573 (708)
+-..++++.|.+.|...... .|+... |.-++-.....+...+|..++...... ...++..++.++..+.....+..
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcc
Confidence 45556666666666666663 455433 322322222345556666666666552 22233344445556666666666
Q ss_pred HHHHHHhC---CCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 038516 574 AENLIAES---PYSEIRIELWRTLLSTCVA------------KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW 638 (708)
Q Consensus 574 A~~~~~~~---~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 638 (708)
|.+-+... +...+|+.....|++.|.. .+..++|.+.|.++++.+|.|.-+-+.+|-+++..|++
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc
Confidence 65533333 1222455555555554432 12355666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhcC
Q 038516 639 DCVAKMRRKMKGS 651 (708)
Q Consensus 639 ~eA~~~~~~~~~~ 651 (708)
.+|+.+|.+.++.
T Consensus 663 ~~A~dIFsqVrEa 675 (1018)
T KOG2002|consen 663 SEARDIFSQVREA 675 (1018)
T ss_pred hHHHHHHHHHHHH
Confidence 6666666666554
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=1.1e-16 Score=172.68 Aligned_cols=352 Identities=10% Similarity=-0.052 Sum_probs=276.6
Q ss_pred HcCCCchHHHHHHHHHHHcC-CCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChh
Q 038516 293 MENGNGEKAVDMFVALRRMS-LLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAES 371 (708)
Q Consensus 293 ~~~g~~~~A~~~~~~m~~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 371 (708)
.+..+|+.-.-+|....++. ....+......++..+.+.|+.+.|..++...+... +-+......++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 34555555444444332220 112233445667788899999999999999998876 4445556666677788999999
Q ss_pred HHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC-HHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 038516 372 PQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD-NFALSGALSACADLAILKQGEMIHSQAEK 447 (708)
Q Consensus 372 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 447 (708)
|...++.+... +...+..+...+...|++++|...+++.... .|+ ...+..+...+...|+.++|...+..+..
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999998653 5567888889999999999999999999875 444 45677788889999999999999998776
Q ss_pred hCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHH
Q 038516 448 TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH----PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EIT 522 (708)
Q Consensus 448 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~ 522 (708)
....+ ...+..+ ..+...|++++|...++.+.+ ++...+..+..++...|++++|+..++++.+. .|+ ...
T Consensus 173 ~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 173 EVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred hCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 54333 3333333 347889999999999998753 23344555677889999999999999999985 454 566
Q ss_pred HHHHHHHHhccCcHHH----HHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHH
Q 038516 523 FLSLLSACSHSGLVER----GKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLS 596 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~ 596 (708)
+..+...+...|++++ |...|+++.+ ..|+ ...+..++..+.+.|++++|...++++. ..+.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 7778889999999986 8999999987 4454 6788899999999999999999999983 33345777888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
.+...|++++|...++++++.+|+++..+..++.++...|++++|...++++.+...
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999887777789999999999999999998876544
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=2.8e-15 Score=140.17 Aligned_cols=411 Identities=15% Similarity=0.147 Sum_probs=270.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHh--ccCCh-------------------------HHHH
Q 038516 16 IQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYG--RCGSI-------------------------RDAR 68 (708)
Q Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~-------------------------~~A~ 68 (708)
+-....+|....+--+++.|...|.+ .++.+-..|.+.-+ ...++ +-|.
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~----vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd 197 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVD----VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD 197 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCC----CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence 33455678888899999999999988 77766666554432 22111 1222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCC
Q 038516 69 QVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSE 148 (708)
Q Consensus 69 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 148 (708)
-+|+.. .+...+|.+||+++|+-.. .+.|.+++++..+...+.+..+||.+|.+-+-. ..++++.+|......|
T Consensus 198 L~~E~~-PKT~et~s~mI~Gl~K~~~-~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETL-PKTDETVSIMIAGLCKFSS-LERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhc-CCCchhHHHHHHHHHHHHh-HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence 222222 2345678888888888777 888888888888887888888888888765432 3377888888888888
Q ss_pred chhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhc
Q 038516 149 DTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSR 228 (708)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 228 (708)
|..|+|+++++.++.|+++.|.+ .|++++.+|++-|+.|+..+|..+|...++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 88888888888888888777754 367888999999999999999999999888
Q ss_pred cCChhH-HHHHHHHHHHh--C--C----CCChhhHHHHHHhcccCCChHHHHHHHhccCC--------CC---hhHHHHH
Q 038516 229 MGNFVC-GKVIHARVIIS--N--T----QVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--------PD---LVSWNSM 288 (708)
Q Consensus 229 ~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l 288 (708)
.++..+ +..++.++... | + +.|...|..-+..|.+..+.+.|.++-.-+.. ++ ..-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 887754 44444444432 2 1 22344566677777788888888777655543 11 2335566
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCC
Q 038516 289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD 368 (708)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 368 (708)
....++....+.-..+|+.|.-. -+-|+..+...++++....+.++...+++..++..|...+.....-+
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei--------- 474 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI--------- 474 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH---------
Confidence 67777888888888888888877 67888888888888888888888888888888877744433322222
Q ss_pred ChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH---HHHHHHHHHhCcccHHHHHHH-HHH
Q 038516 369 AESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF---ALSGALSACADLAILKQGEMI-HSQ 444 (708)
Q Consensus 369 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~-~~~ 444 (708)
+..|.+....|+.. -+.....-|+ .++.++.+. -.+
T Consensus 475 --------------------------------------l~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R 514 (625)
T KOG4422|consen 475 --------------------------------------LMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIR 514 (625)
T ss_pred --------------------------------------HHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHH
Confidence 22222222222211 1211111111 011111111 112
Q ss_pred HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHH---HHHHHHHhcCChHHHHHHHHHHHHCC
Q 038516 445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWN---ALLGGYSHYGMAEEAFMVFEVILEHG 515 (708)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g 515 (708)
+. ....+....+...-.+.+.|+.++|.++|.-+.+ |-....| .++....+.+++..|...++-|...+
T Consensus 515 ~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 515 QR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 22 2344555667777778888888888888876631 2223333 45566677788888888888887654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=1.5e-15 Score=164.02 Aligned_cols=436 Identities=10% Similarity=0.034 Sum_probs=232.8
Q ss_pred HhHhCCChhHHHHHhccCCCCCcc---cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcc-hHHHH--HHHHhccCCh
Q 038516 159 MYSNCGDFESAKRIFGLIGDKDAV---AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQF-SYSML--LNACSRMGNF 232 (708)
Q Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~~~~ 232 (708)
...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 456778888888887776642222 22366677777788888888877776 33222 22222 4456667788
Q ss_pred hHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 038516 233 VCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIAGYMENGNGEKAVDMFVALRR 310 (708)
Q Consensus 233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 310 (708)
++|.++++++++.. +.+...+..++..+...++.++|+..++++.. |+...+..++..+...++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888777764 33455666667777777777777777777765 3333333333333334455457777777776
Q ss_pred cCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhh
Q 038516 311 MSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEM 390 (708)
Q Consensus 311 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 390 (708)
. .+-+...+..+..++.+.|-...|.++... .|+.++-...... +.+.|.+..+....+.
T Consensus 198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~------- 257 (822)
T PRK14574 198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPT------- 257 (822)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccc-------
Confidence 4 233444555555666666655555544433 1111110000000 0011111111100000
Q ss_pred HHHHhcCCC---hHHHHHHHHHHhHC-CCccCH-H----HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038516 391 IIGHSRMGD---GECAIKLFCKMCRE-GLKCDN-F----ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV 461 (708)
Q Consensus 391 i~~~~~~~~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (708)
-....+ .+.|+.-++.+... +-.|.. . ...-.+-++...++..++...++.+...+.+....+-.++.
T Consensus 258 ---~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 258 ---RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ---ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 001112 23445555554431 112321 1 12233445556666777777777777666555555666677
Q ss_pred HhhHhcCCHHHHHHHHhhCCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC--C
Q 038516 462 DMYAKNGDLRAAESIFSQVLHP---------DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL-----------RP--D 519 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~ 519 (708)
++|...+++++|+.+|..+..+ +......|.-+|...+++++|..+++++.+.-. .| |
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 7777777777777777665321 122235566666777777777777777765211 11 1
Q ss_pred hHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHH
Q 038516 520 EIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLST 597 (708)
Q Consensus 520 ~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 597 (708)
-.. +..++..+.-.|+..+|++.++++... -+-+......+.+.+...|++.+|++.++.+....| +..+....+.+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 112 223344555666666666666666542 122355555666666666666666666655522223 33444455555
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
+...+++++|+...+.+++..|+++.
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 55566666666666666666666654
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=3.3e-16 Score=172.93 Aligned_cols=402 Identities=12% Similarity=0.045 Sum_probs=246.8
Q ss_pred CchhHHhHHHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC-CcchHHHHH
Q 038516 148 EDTCVQTSLLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNP-TQFSYSMLL 223 (708)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll 223 (708)
.++....-.+......|+.++|++++..... .+...+..+...+...|++++|.++|++..+. .| +......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444555666667777888888777776553 23334677777777778888888888777664 34 344455666
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHHHHHHHHHcCCCchH
Q 038516 224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWNSMIAGYMENGNGEK 300 (708)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~ 300 (708)
..+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++.+ | +...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 66677777777777777777663 33444 66677777777777777777777654 3 33445556666666777777
Q ss_pred HHHHHHHHHHcCCCCCCHhH------HHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCC---hh
Q 038516 301 AVDMFVALRRMSLLKPDEYT------FAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDA---ES 371 (708)
Q Consensus 301 A~~~~~~m~~~~~~~p~~~t------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~ 371 (708)
|+..++.... .|+... ...++.... .......+++ ++
T Consensus 169 Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~------------------------------~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 169 ALGAIDDANL----TPAEKRDLEADAAAELVRLSF------------------------------MPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhc------------------------------ccccChhHHHHHHHH
Confidence 7776665432 232100 000011000 0000111122 44
Q ss_pred HHHHHhhcCC---CCEeeehh-------hHHHHhcCCChHHHHHHHHHHhHCCCc-cCHHHHHHHHHHHhCcccHHHHHH
Q 038516 372 PQKVFMLIAE---KDIVLWTE-------MIIGHSRMGDGECAIKLFCKMCREGLK-CDNFALSGALSACADLAILKQGEM 440 (708)
Q Consensus 372 A~~~~~~~~~---~~~~~~~~-------li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~ 440 (708)
|...++.+.+ .++..... .+..+...|++++|+..|+++.+.+.. |+.... .
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~---------------- 277 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-W---------------- 277 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-H----------------
Confidence 5555554442 12111111 122345667888888888888766422 322111 1
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 441 IHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD-----LKCWNALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
+..+|...|++++|+..|+++.. |. ...+..+..++...|++++|..+++++..
T Consensus 278 -------------------la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 278 -------------------VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred -------------------HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 23344455555555555554431 11 12344455566667777777777777665
Q ss_pred CC-----------CCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 514 HG-----------LRPDE---ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIA 579 (708)
Q Consensus 514 ~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 579 (708)
.. -.|+. ..+..+...+...|+.++|++.++++... .+-+...+..++..+...|++++|++.++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 41 12332 23445666788899999999999998873 22246778888999999999999999999
Q ss_pred hCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 580 ESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 580 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
++....| +...+..++..+...|++++|+..++++++..|+++.+
T Consensus 418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9843334 46777777778888999999999999999999999864
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=6.4e-13 Score=131.12 Aligned_cols=611 Identities=10% Similarity=0.062 Sum_probs=426.4
Q ss_pred ccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCC---CCCcccHHHHHHHHHhCCCChH
Q 038516 21 SITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIP---KRSLVSYNALIAAYSRDHDHAH 97 (708)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~ 97 (708)
..+++..|+-++..+.++++. ++..|-+-...=-..|++..|..+..+=. .++...|---+ +... .+
T Consensus 263 dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp-~d 332 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHP-PD 332 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCC-hH
Confidence 356788888889888888754 33333333333345677777777665422 22333332211 1222 44
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCC
Q 038516 98 LTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG 177 (708)
Q Consensus 98 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 177 (708)
.|-.+....... -|++... -+.+.-...+...-..+++..++. ++.++..|...+. ..+.+.|+-++....
T Consensus 333 ~aK~vvA~Avr~--~P~Sv~l--W~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAv 403 (913)
T KOG0495|consen 333 VAKTVVANAVRF--LPTSVRL--WLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAV 403 (913)
T ss_pred HHHHHHHHHHHh--CCCChhh--hhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHH
Confidence 454454444432 2333321 122222222333334455544443 3445555544433 344555666666544
Q ss_pred C---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHH----HhCCCCC
Q 038516 178 D---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVI----ISNTQVD 250 (708)
Q Consensus 178 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~ 250 (708)
+ .+...|. ++.+..-++.|..++++.++. ++-+...|.+....=-..|+.+...+++++-+ ..|+..+
T Consensus 404 eccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~ 478 (913)
T KOG0495|consen 404 ECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEIN 478 (913)
T ss_pred HhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeec
Confidence 3 2333343 344556677888888887764 55567777777666677788888777776644 3467777
Q ss_pred hhhHHHHHHhcccCCChHHHHHHHhccCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHH
Q 038516 251 LPLENALLDMYSKCSDTQTAFSVFTRIEN------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAI 324 (708)
Q Consensus 251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~l 324 (708)
..-|..=...|-..|..--+..+...... .--.+|+.-...|.+.+.++-|..+|....+. .+-+...|...
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra 556 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRA 556 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHH
Confidence 77776666667667776666666655542 23357888888888888888888888888764 55566667776
Q ss_pred HHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChH
Q 038516 325 ISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGE 401 (708)
Q Consensus 325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 401 (708)
...--..|..+....++..++..- +.....|......+...|+...|+.++...-+. +...|-.-+.....+..++
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH
Confidence 666677788888888888877663 555666777777788889999999888877553 4456777778888888999
Q ss_pred HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC
Q 038516 402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL 481 (708)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 481 (708)
+|..+|.+.... .|+...|.--...---.++.++|.++++...+. ++.-...|..+.+.+-..++++.|...|..-.
T Consensus 636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 999999887654 566666655555555678889999998777664 34456778888899999999999999998765
Q ss_pred ---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHH
Q 038516 482 ---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHY 558 (708)
Q Consensus 482 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 558 (708)
+..+..|-.|...--+.|++-+|..++++..-.+ +-|...|...++.-.+.|..+.|..++.+..+ ..+.+...|
T Consensus 713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LW 790 (913)
T KOG0495|consen 713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLW 790 (913)
T ss_pred ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhH
Confidence 3456778888888888999999999999998864 33677788999999999999999999998887 455566778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 038516 559 SCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW 638 (708)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 638 (708)
..-+....+.++-..+.+.+++.. .|+.++..+...+....+++.|..-|++++.++|++..+|..+-..+...|.-
T Consensus 791 aEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 791 AEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH
Confidence 877888888888888888888875 46777888888888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCccCCceeEEEecCeE
Q 038516 639 DCVAKMRRKMKGSMLGKEPGLSWIEAKNNV 668 (708)
Q Consensus 639 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (708)
++-.+++.+..... +.-|..|+-+..++
T Consensus 868 ed~kev~~~c~~~E--P~hG~~W~avSK~i 895 (913)
T KOG0495|consen 868 EDQKEVLKKCETAE--PTHGELWQAVSKDI 895 (913)
T ss_pred HHHHHHHHHHhccC--CCCCcHHHHHhhhH
Confidence 99999999887643 34566676554443
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.76 E-value=3.8e-13 Score=138.12 Aligned_cols=619 Identities=14% Similarity=0.098 Sum_probs=400.2
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcC---CCCCcccHHHHHHHHHhC
Q 038516 16 IQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEI---PKRSLVSYNALIAAYSRD 92 (708)
Q Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~ 92 (708)
..-+.-.|++++|..++.++.+..+. .+..|..|...|-..|+.+++...+--. .+.|..-|-.+-.-..+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 33344459999999999999987654 7889999999999999999999887654 344667788888888888
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhH----HHHHhHhCCChhH
Q 038516 93 HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTS----LLGMYSNCGDFES 168 (708)
Q Consensus 93 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~ 168 (708)
|. +..|.-+|.+..+.. +++...+---...|-+.|+...|...+.++.....+.|..-... .++.|...++-+.
T Consensus 221 ~~-i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 221 GN-INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cc-HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 88 999999999998863 33434444455667789999999999999988875444433333 3555667777788
Q ss_pred HHHHhccCCC-----CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc----------------------chH--
Q 038516 169 AKRIFGLIGD-----KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ----------------------FSY-- 219 (708)
Q Consensus 169 A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------------~~~-- 219 (708)
|.+.++.... -+...+|.++..+.+...++.|......+......+|. ..|
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 9888876654 25567889999999999999999988888762222211 111
Q ss_pred --HHHHHHHhccCChhHHHHHHHHHHHhCC--CCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHH
Q 038516 220 --SMLLNACSRMGNFVCGKVIHARVIISNT--QVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAG 291 (708)
Q Consensus 220 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~ 291 (708)
..+.-++.+....+....+......... .-++..+..+.++|...|++.+|..+|..+.. .+...|-.+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 1233344566666667777777777763 44567889999999999999999999999876 466789999999
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHH--------HHCCCCchhHHhHHHHHH
Q 038516 292 YMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVI--------KTGYDSSVFVGTTLLNMY 363 (708)
Q Consensus 292 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~ 363 (708)
|...|.+++|.+.|++.... -+.+...-..|-..+...|+.++|.+.+..+. ..+..|+..........+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999999865 23333445556667788999999998888743 233456666666677778
Q ss_pred HhcCCChhHHHHHhhcCCC--------------------------CEeeehhhHHHHhcCCChHHHHH------HHHHHh
Q 038516 364 FKNGDAESPQKVFMLIAEK--------------------------DIVLWTEMIIGHSRMGDGECAIK------LFCKMC 411 (708)
Q Consensus 364 ~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~A~~------~~~~m~ 411 (708)
.+.|+.++-..+-..|..+ .......++.+-.+.++...... .+.--.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 8888877754443333211 00111122223333332211111 111111
Q ss_pred HCCCccCHH--HHHHHHHHHhCcccHHHHHHHHHHHHHhCC--CCch---hHHHHHHHhhHhcCCHHHHHHHHhhCCCC-
Q 038516 412 REGLKCDNF--ALSGALSACADLAILKQGEMIHSQAEKTGH--GVEM---SVCGSLVDMYAKNGDLRAAESIFSQVLHP- 483 (708)
Q Consensus 412 ~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 483 (708)
..|+.-+.. .+.-++...++.+++++|..+...+..... .++. ..-...+.+.+..+++..|.+.+..+...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 223333332 344556667778888888887776655322 1111 22334555666778888888877776422
Q ss_pred ----C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516 484 ----D---LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL--LSACSHSGLVERGKILWNQMKEHSLIPG 554 (708)
Q Consensus 484 ----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~p~ 554 (708)
+ ...||.....+.+.++-.--.+++..+... .|+......+ ..-...++.+.-|+..+-+... ..|+
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd 772 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPD 772 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCC
Confidence 2 345665555555555544444444443332 3332122222 2234456777788877776665 3455
Q ss_pred hHHHHHHH-HHHH----------hcCCHHHHHHHHHhC-CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 555 HKHYSCMV-SLLS----------RAGLLDEAENLIAES-PYSEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 555 ~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
...++.++ -++. |.-..-.+..++.+. ....+ ..+++-.++.+|...|=+..|+.+|+++++..|.
T Consensus 773 ~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 773 SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 33333221 1111 111233455555444 11112 4667788889999999999999999999998765
Q ss_pred Ccc------------hHHHHHHHHHhcCCchHHHHHHHH
Q 038516 621 DGT------------THILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 621 ~~~------------~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
+.. +-..|.-+|...|+..-|..+.++
T Consensus 853 ~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 853 DVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 432 133666689999999988887764
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=6e-14 Score=131.36 Aligned_cols=441 Identities=12% Similarity=0.078 Sum_probs=258.4
Q ss_pred cccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhc--cccchHHH-HHHHHHHHHhCCCCchhHHhH
Q 038516 79 LVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVS--LLEDQLMG-SLLHAQVIKYGSSEDTCVQTS 155 (708)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 155 (708)
+.+-|.|+... .++. .+++.-+|++|+..|+..+...-..|++..+ ...++.-+ ++-|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~kmI-S~~E-vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSRE-VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred hcchhHHHHHH-hhcc-cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--
Confidence 44566766544 4677 8899999999999998877776666665544 23333322 233444444442 222233
Q ss_pred HHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHH
Q 038516 156 LLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCG 235 (708)
Q Consensus 156 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 235 (708)
+.|++.+ ++-+.......+|..||.++|+....+.|.++|++-.....+.+..+||.+|.+-+-.- .
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence 3455444 44444445667899999999999999999999999988888889999999998765332 2
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 038516 236 KVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLK 315 (708)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 315 (708)
+++..+|.+....||..|+|+++.+.++.|+++.|.+. |++++.+|++- |+.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKei-GVe 309 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEI-GVE 309 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHh-CCC
Confidence 78888999888899999999999888888888777543 44555566665 666
Q ss_pred CCHhHHHHHHHHHcCCCCccc-hHHHHHHHHH----HCC----CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCC---
Q 038516 316 PDEYTFAAIISATSALPASAY-GKPLHALVIK----TGY----DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD--- 383 (708)
Q Consensus 316 p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 383 (708)
|...+|..++...++.++..+ +..+..++.. ..+ +.+...+...+..|.+..+.+-|.++-.-+...+
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 666666666666655555433 2222222222 111 2234445555555555556555555544333210
Q ss_pred --------EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516 384 --------IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS 455 (708)
Q Consensus 384 --------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 455 (708)
..-|..+....|+....+.-+..|+.|.-+-+-|+..+...++++....+.++-.-+++..+...|......
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 011334555566666777777788888777777888888888888888888888888888777776544333
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCCCCChH---HHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVLHPDLK---CWNALLGGYSHYGMAEE-AFMVFEVILEHGLRPDEITFLSLLSACS 531 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 531 (708)
...-++..+++.. +.|+.. -+.....-++. ++.+ ....-.+|.+..+ .....+.++..+.
T Consensus 470 l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 470 LREEILMLLARDK------------LHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDW--PATSLNCIAILLL 533 (625)
T ss_pred HHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccC--ChhHHHHHHHHHH
Confidence 3222222222211 122212 11111111110 1111 1122233333322 2334455555566
Q ss_pred ccCcHHHHHHHHHHhhHCC-CCc---ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 532 HSGLVERGKILWNQMKEHS-LIP---GHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 532 ~~~~~~~a~~~~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
+.|..++|.+++..+.+.+ -.| ......-+++.-.+.+..-.|...++-|
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7777777777777665442 122 2222223444444555555555555554
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.9e-13 Score=147.86 Aligned_cols=435 Identities=11% Similarity=0.009 Sum_probs=296.5
Q ss_pred HhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHH-H--HHHHhcCCChhHH
Q 038516 124 AVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNS-I--ILGNFKNDKMKEG 200 (708)
Q Consensus 124 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A 200 (708)
...+.|++..|...+++..+........++ .++..+...|+.++|+..++....|+...+.. + ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 456899999999999999888643223444 88888999999999999999988765444443 3 3467788999999
Q ss_pred HHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC
Q 038516 201 LSLFGAMVGSGVNP-TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN 279 (708)
Q Consensus 201 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 279 (708)
+++|+++.+. .| +...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|+..++++.+
T Consensus 122 iely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999986 44 3455667778888999999999999998876 44555555555556556777679999999876
Q ss_pred --C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHH
Q 038516 280 --P-DLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVG 356 (708)
Q Consensus 280 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 356 (708)
| +...+..++.++.+.|-...|+++..+-... ..+...- .+-. ....+.++.+..++..-
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~--~l~~------------~~~a~~vr~a~~~~~~~- 260 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYR--QLER------------DAAAEQVRMAVLPTRSE- 260 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHH--HHHH------------HHHHHHHhhcccccccc-
Confidence 4 5667788889999999999999877654322 2222111 1100 00011111111110000
Q ss_pred hHHHHHHHhcCCChhHHHHHhhcCC---CCE---e----eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516 357 TTLLNMYFKNGDAESPQKVFMLIAE---KDI---V----LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL 426 (708)
Q Consensus 357 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~---~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 426 (708)
-. +.--.+.|+.-++.+.. +++ . +.--.+-++...|++.++++.|+.+...|.+....+-..+.
T Consensus 261 ---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 261 ---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00 00001112222222211 111 0 11123456677788888888888888777665556777788
Q ss_pred HHHhCcccHHHHHHHHHHHHHhC-----CCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C---------------C
Q 038516 427 SACADLAILKQGEMIHSQAEKTG-----HGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P---------------D 484 (708)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---------------~ 484 (708)
.+|...+..++|..++..+.... .+++......|.-+|...+++++|..+++.+.+ | |
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 88888888888888888775532 123344456778888888888888888887732 1 1
Q ss_pred h-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHH
Q 038516 485 L-KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMV 562 (708)
Q Consensus 485 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~ 562 (708)
- ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++.... +.|+ ..+....+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~ 491 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQA 491 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHH
Confidence 1 234456777889999999999999998852 33677788888899999999999999977765 4565 56677888
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCCHH
Q 038516 563 SLLSRAGLLDEAENLIAESPYSEIRIE 589 (708)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 589 (708)
..+...|++.+|..+.+......|+..
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 899999999999999877733334433
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=3.5e-14 Score=133.68 Aligned_cols=203 Identities=11% Similarity=0.089 Sum_probs=155.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC---CCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038516 433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV---LHPDLKCWNALLGGYSHYGMAEEAFMVFE 509 (708)
Q Consensus 433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (708)
|++++|.+.+++.....-......|| +.-.+...|++++|+..|-++ +..++.....+...|-...++.+|++++-
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 44444444444444332222222222 223455678888888888665 35677777788888999999999999998
Q ss_pred HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHH
Q 038516 510 VILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIE 589 (708)
Q Consensus 510 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 589 (708)
+.... ++.|...+.-|...|-+.|+-.+|.+.+-.-.. -++-+..+...|..-|....-+++|..+|+++....|+..
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 88774 344667788888899999999999887654433 3445688999999999999999999999999965559999
Q ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 038516 590 LWRTLLSTC-VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW 638 (708)
Q Consensus 590 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 638 (708)
-|..++..| ++.|++++|...|+...+..|.+...+..|++++...|..
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 999988877 5689999999999999999999999999999999888743
No 32
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.72 E-value=4.7e-13 Score=136.57 Aligned_cols=589 Identities=12% Similarity=0.051 Sum_probs=318.4
Q ss_pred HHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCC----CcccHHHHHHHHHhCCCChHHHHHHHHH
Q 038516 30 QIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKR----SLVSYNALIAAYSRDHDHAHLTFRLIDQ 105 (708)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 105 (708)
.++..+...|+. |+..+|.+||.-||..|+++.|- +|.-|.-+ +-..++.++.++.+.++ .+.+.
T Consensus 11 nfla~~e~~gi~----PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And-~Enpk----- 79 (1088)
T KOG4318|consen 11 NFLALHEISGIL----PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAND-AENPK----- 79 (1088)
T ss_pred hHHHHHHHhcCC----CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccc-ccCCC-----
Confidence 567788889999 88899999999999999999998 88777633 23356777777666666 44432
Q ss_pred HHHcCCCCCcchHHHHHHHhccccchHHHHHH---HHHHHH----hCC-----------------CCchhHHhHHHHHhH
Q 038516 106 MEFECLRPNGLTFTSLAQAVSLLEDQLMGSLL---HAQVIK----YGS-----------------SEDTCVQTSLLGMYS 161 (708)
Q Consensus 106 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~----~g~-----------------~~~~~~~~~li~~~~ 161 (708)
.|.+.||+.++.+|...||+..-..+ +..+.. .|+ -||. ...+....
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv 150 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLV 150 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHH
Confidence 56777777777777777765442222 111111 111 1111 12222223
Q ss_pred hCCChhHHHHHhccCC----------------------------------CCCcccHHHHHHHHhcCCChhHHHHHHHHH
Q 038516 162 NCGDFESAKRIFGLIG----------------------------------DKDAVAWNSIILGNFKNDKMKEGLSLFGAM 207 (708)
Q Consensus 162 ~~g~~~~A~~~~~~~~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 207 (708)
-.|-++.+++++..++ .++..+|.+++.+-.-+|+.+.|..++.+|
T Consensus 151 ~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em 230 (1088)
T KOG4318|consen 151 LEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM 230 (1088)
T ss_pred HHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 3344444444443332 146667777777777788888888888888
Q ss_pred HhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHH
Q 038516 208 VGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNS 287 (708)
Q Consensus 208 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 287 (708)
++.|++.+..-|..|+-+ .++...++.++.-|.+.|+.|+..|+...+-.+.+.|....+... . +....+++
T Consensus 231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tA 302 (1088)
T KOG4318|consen 231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTA 302 (1088)
T ss_pred HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhH
Confidence 888887777777777655 667777777788888888888888877776666654442222111 1 11111222
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHc-----------CCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCC---CCch
Q 038516 288 MIAGYMENGNGEKAVDMFVALRRM-----------SLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGY---DSSV 353 (708)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 353 (708)
-+.+-+-.| ..|.+.++.-... .|+......|...... ...|.-+.+.++-..+..--. +.++
T Consensus 303 avrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 303 AVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred HHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchH
Confidence 222222222 1122222111100 0111111222222211 124444444444444332111 1122
Q ss_pred hHHhHHHHHHHhcCC----------------------ChhHHHHHhhcCC----------------CCEeee--------
Q 038516 354 FVGTTLLNMYFKNGD----------------------AESPQKVFMLIAE----------------KDIVLW-------- 387 (708)
Q Consensus 354 ~~~~~li~~~~~~g~----------------------~~~A~~~~~~~~~----------------~~~~~~-------- 387 (708)
..+..++.-|++.-+ .....+....... +....|
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 333333333333211 1111111111111 011111
Q ss_pred ---hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH--hCCCCchhHHHHHHH
Q 038516 388 ---TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK--TGHGVEMSVCGSLVD 462 (708)
Q Consensus 388 ---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~ 462 (708)
+.++..++..-+..+++..-+..... .-| ..|..+++-|+.....+.|..+.+++.. ..+..+...+..+.+
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 22333333333333333322222211 111 4577788888888888888888877653 334456667778888
Q ss_pred hhHhcCCHHHHHHHHhhCCC-----CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---------------
Q 038516 463 MYAKNGDLRAAESIFSQVLH-----PD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI--------------- 521 (708)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------------- 521 (708)
.+.+.+....+..++.++.+ |+ ..++--++...+..|+.+...++++-+...|+.-+..
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhh
Confidence 88888888888888887742 22 3344556667777888888888888877766532111
Q ss_pred ---------------HHHHHHHH---------------------HhccCcHHHHHHHHHHhh---HCC---------CCc
Q 038516 522 ---------------TFLSLLSA---------------------CSHSGLVERGKILWNQMK---EHS---------LIP 553 (708)
Q Consensus 522 ---------------~~~~ll~~---------------------~~~~~~~~~a~~~~~~~~---~~~---------~~p 553 (708)
....+.+. |.+.|++.+|.++.+.=- +.+ +.|
T Consensus 617 ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~ 696 (1088)
T KOG4318|consen 617 EAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVP 696 (1088)
T ss_pred hcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCcccc
Confidence 00011111 112222222221111000 000 000
Q ss_pred ---------ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC
Q 038516 554 ---------GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 554 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~ 621 (708)
+.....-|+..|.+.|+++.|..++.+++.. |++.....++..+.++. |+-++..-.+++-+..|..
T Consensus 697 lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~-k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f 775 (1088)
T KOG4318|consen 697 LELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVS-KSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLF 775 (1088)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCC-cchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccccc
Confidence 0011223677899999999999999999866 77777777777776643 6667777777777766665
Q ss_pred cch---HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 622 GTT---HILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 622 ~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+.+ |.--+.+..+....+.|.+.|.+..++..
T Consensus 776 ~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 776 PTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred ccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 543 33333333333444477888988877643
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=1e-12 Score=135.07 Aligned_cols=554 Identities=11% Similarity=0.039 Sum_probs=245.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCC-CCchhHHhHHHHHhHhCCChhHHHH
Q 038516 93 HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGS-SEDTCVQTSLLGMYSNCGDFESAKR 171 (708)
Q Consensus 93 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~ 171 (708)
|+ .+.|.+++.+..+.. +-+...|-.|-..+-..|+.+.+...+ ++.... +.|...|..+-....+.|.++.|.-
T Consensus 153 g~-~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GD-LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CC-HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 55 555555555555432 234445555555555555555444332 222221 3344555555555555555555555
Q ss_pred HhccCCCCCcccHHHH---HHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHH----HHHHHhccCChhHHHHHHHHHHH
Q 038516 172 IFGLIGDKDAVAWNSI---ILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSM----LLNACSRMGNFVCGKVIHARVII 244 (708)
Q Consensus 172 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~ 244 (708)
+|.+..+.++.-|-.+ +..|-+.|+...|.+.|.++.....+.|..-+.. +++.+...++-+.|.+.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 5555443222222222 2334455555555555555554322111111222 22233334444445555444443
Q ss_pred h-CCCCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHH----------------------H----HHHHHHH
Q 038516 245 S-NTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSW----------------------N----SMIAGYM 293 (708)
Q Consensus 245 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~----------------------~----~li~~~~ 293 (708)
. +-..+...++.++..|.+...++.+......+.. +|..-| . -++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 1223334455555555555555555444433322 222211 0 0111222
Q ss_pred cCCCchHHHHHHHHHHHcCC--CCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChh
Q 038516 294 ENGNGEKAVDMFVALRRMSL--LKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAES 371 (708)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 371 (708)
.....+....+....... . ..-+...|.-+..++...|.+..|..++..+......-+..+|-.+..+|...|..+.
T Consensus 389 ~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred cccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 222222222222222222 2 1222334455555555555555555555555554433445555555555555555555
Q ss_pred HHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhH--------CCCccCHHHHHHHHHHHhCcccHHHHHH
Q 038516 372 PQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCR--------EGLKCDNFALSGALSACADLAILKQGEM 440 (708)
Q Consensus 372 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 440 (708)
|...+..+..- +....-.|...+.+.|+.++|.+++..+.. .+..|+..........+.+.|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55555554432 222233344455555555555555555321 1123333333333344444555444443
Q ss_pred HHHHHHHhC-----CCCc-----------------hhHHHHHHHhhHhcCCHHHHHHHHhhC--------CCCCh----H
Q 038516 441 IHSQAEKTG-----HGVE-----------------MSVCGSLVDMYAKNGDLRAAESIFSQV--------LHPDL----K 486 (708)
Q Consensus 441 ~~~~~~~~~-----~~~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~----~ 486 (708)
+...+.... +-|+ ......++.+-.+.++......-...- ..-+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 333333211 1010 000001111111111111111000000 00011 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChH--HH-HHHHHHHhccCcHHHHHHHHHHhhHC-CC--CcC-hHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLR--PDEI--TF-LSLLSACSHSGLVERGKILWNQMKEH-SL--IPG-HKH 557 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~--~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-~~--~p~-~~~ 557 (708)
.+.-++.++++.+++++|+.+...+...... ++.. .+ ...+.++...+++..|...++.|... +. .|. ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 2345677888999999999998888875322 2221 22 33455677888999999998888765 22 222 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------------
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAESPYSEIRI--ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG------------- 622 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------------- 622 (708)
|+...+.+.+.|+---=.+++..+...+++. ......+......+.+.-|...+-++....|++|
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 4433333333333222222222221111111 0000011112223334444444444444444443
Q ss_pred ---------------------------------chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 623 ---------------------------------TTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 623 ---------------------------------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.+...+|++|...|-..=|..++++..+-
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 34678888888888888899999888654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.69 E-value=5.5e-11 Score=117.78 Aligned_cols=511 Identities=11% Similarity=0.071 Sum_probs=391.7
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCC
Q 038516 98 LTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG 177 (708)
Q Consensus 98 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 177 (708)
.=.+++++..+. -|+... |=++.....+.+.|.-++....+.- +.+.. |.-+|++..-++.|..+++...
T Consensus 364 ~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaR 433 (913)
T KOG0495|consen 364 NKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAR 433 (913)
T ss_pred HHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666554 344442 2234445566666777777766542 33333 3345566677888888887665
Q ss_pred C---CCcccHHHHHHHHhcCCChhHHHHHHHH----HHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCC-
Q 038516 178 D---KDAVAWNSIILGNFKNDKMKEGLSLFGA----MVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQV- 249 (708)
Q Consensus 178 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~- 249 (708)
+ .+...|.+-...--.+|+.+...+++.+ +...|+..+...|..=...|-..|..-.+..+....+..|+..
T Consensus 434 e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 434 EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 4 4777787777766778888888887764 4567899999999999999999999999999999998888654
Q ss_pred -ChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHH
Q 038516 250 -DLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAII 325 (708)
Q Consensus 250 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll 325 (708)
-..+|+.-...|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....|....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHH
Confidence 346888889999999999999999998876 45567777777667789999999999999975 454455555555
Q ss_pred HHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC--CCEeeehhhHHHHhcCCChHHH
Q 038516 326 SATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE--KDIVLWTEMIIGHSRMGDGECA 403 (708)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A 403 (708)
...-..|++..|..++..+.+.. +.+..+|.+-+...+...+++.|+.+|..... +....|..-+...--.++.++|
T Consensus 592 ke~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHH
Confidence 66667799999999999998886 55888999999999999999999999998765 3555666666666667899999
Q ss_pred HHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-
Q 038516 404 IKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL- 481 (708)
Q Consensus 404 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 481 (708)
++++++.++. -|+. ..|..+-+.+.+.++++.|...|..=.+. ++..+..+-.|...-.+.|.+-.|..+|+...
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 9999988875 4554 46666667778888888888776543322 34566777788888889999999999999874
Q ss_pred --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHH
Q 038516 482 --HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYS 559 (708)
Q Consensus 482 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 559 (708)
+.|...|-..|+.-.+.|+.+.|..+..++++. ++.+...|.--|...-+.++-......+++ ..-|+++.-
T Consensus 748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVll 821 (913)
T KOG0495|consen 748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLL 821 (913)
T ss_pred cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHH
Confidence 457889999999999999999999999999886 344566677777766666664444444443 334566677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 560 CMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
.+...+....++++|.+.|.+.. ..+...+.|..+...+..+|.-+.-..++.+...-+|.....|.....
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 78899999999999999999983 333457889999999999999999999999999999999887776653
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.3e-13 Score=129.95 Aligned_cols=454 Identities=15% Similarity=0.124 Sum_probs=285.7
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhhH-HHHHHhcccCCChHHHHHHHhccCC--CC------hhHHHHHHHHHHcC
Q 038516 225 ACSRMGNFVCGKVIHARVIISNTQVDLPLE-NALLDMYSKCSDTQTAFSVFTRIEN--PD------LVSWNSMIAGYMEN 295 (708)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~ 295 (708)
.|.......+|...++-+++...-|+.... -.+-+.+.+...+.+|++.++.... |+ +...+.+.-.+.+.
T Consensus 210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 333444455666666666666555554432 2344566677777777776654432 21 22344445556777
Q ss_pred CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC------------CchhHHhHHH---
Q 038516 296 GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD------------SSVFVGTTLL--- 360 (708)
Q Consensus 296 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~li--- 360 (708)
|+++.|+..|+...+. .|+..+-..++-++...|+.+...+.|..|+..... |+....+..+
T Consensus 290 gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred ccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 7888888777776654 577766666666666677777777777777654322 2222222221
Q ss_pred --HHHHhcC--CChhHHHHHhhcC----CCCEee---e----------h--------hhHHHHhcCCChHHHHHHHHHHh
Q 038516 361 --NMYFKNG--DAESPQKVFMLIA----EKDIVL---W----------T--------EMIIGHSRMGDGECAIKLFCKMC 411 (708)
Q Consensus 361 --~~~~~~g--~~~~A~~~~~~~~----~~~~~~---~----------~--------~li~~~~~~~~~~~A~~~~~~m~ 411 (708)
.-+-+.. +.+++.-.-..+. .++... | . .-...|.++|+++.|+++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111 1122211111121 221100 0 0 11235788999999999998887
Q ss_pred HCCCccCHHHHHH--HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHH
Q 038516 412 REGLKCDNFALSG--ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWN 489 (708)
Q Consensus 412 ~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 489 (708)
+..-+.-...-+. .+.......++..|.++-+...... .-++.....-...-...|++++|.+.|++.+..|...-.
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 6543333322222 2222222345666666655444322 112222222223344679999999999999988776655
Q ss_pred HHHH---HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHH
Q 038516 490 ALLG---GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLL 565 (708)
Q Consensus 490 ~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 565 (708)
+|.. .+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++..... +.| |+...+.|.+.|
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 5443 567889999999999998764 344677777888889999999999999988765 445 588899999999
Q ss_pred HhcCCHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516 566 SRAGLLDEAENLIAE-SPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM 644 (708)
Q Consensus 566 ~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 644 (708)
-+.|+-..|.+..-+ ...-|.+.++...|...|....=.+++..+++++.-+.|+...-...++.++.+.|+|..|.++
T Consensus 603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999987544 4555467888888888888888899999999999999998776555778888899999999999
Q ss_pred HHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHH
Q 038516 645 RRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLR 692 (708)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 692 (708)
++...++ ++....|-.. ..-++||..-.+..|-..+|+++.
T Consensus 683 yk~~hrk-fpedldclkf------lvri~~dlgl~d~key~~klek~e 723 (840)
T KOG2003|consen 683 YKDIHRK-FPEDLDCLKF------LVRIAGDLGLKDAKEYADKLEKAE 723 (840)
T ss_pred HHHHHHh-CccchHHHHH------HHHHhccccchhHHHHHHHHHHHH
Confidence 9988654 2222222110 011456656666666666665543
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=2.9e-12 Score=130.99 Aligned_cols=522 Identities=12% Similarity=0.038 Sum_probs=275.0
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCC
Q 038516 101 RLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKD 180 (708)
Q Consensus 101 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 180 (708)
.++-.|...|+.|+..||.+++..|+..|+.+.|- +|..|.-...+....+++.++.+....++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45566667777777777777777777777777776 7777766666677777777777777777666554 566
Q ss_pred cccHHHHHHHHhcCCChhHHHHHHHH-HH-------hCCCCCCcchHH--------------HHHHHHhccCChhHHHHH
Q 038516 181 AVAWNSIILGNFKNDKMKEGLSLFGA-MV-------GSGVNPTQFSYS--------------MLLNACSRMGNFVCGKVI 238 (708)
Q Consensus 181 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~~~~--------------~ll~~~~~~~~~~~a~~~ 238 (708)
..+|+.|..+|...||... ++..++ |. ..|+.--..-|- .++......|-++.+.++
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776544 222221 21 112111111111 111112222333333333
Q ss_pred HHHHHHhCCCCChhhHHHHHHhcc-cCCChHHHHHHHhccCC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC
Q 038516 239 HARVIISNTQVDLPLENALLDMYS-KCSDTQTAFSVFTRIEN-PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKP 316 (708)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 316 (708)
+..+-..... .+... .++-+. ....+++-..+.....+ ++..+|..++.+-..+|+.+.|..++.+|++. |.+.
T Consensus 162 l~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpi 237 (1088)
T KOG4318|consen 162 LAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPI 237 (1088)
T ss_pred HhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCc
Confidence 3222111000 00001 122221 12233444444444444 88889999999888999999999999999998 8888
Q ss_pred CHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhc
Q 038516 317 DEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSR 396 (708)
Q Consensus 317 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 396 (708)
+.+-|-.++-+ .++...+..+++-|...|+.|+..|+...+..+.+.|....+. +..+ ....+++-+..-.-
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~----e~sq-~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE----EGSQ-LAHGFTAAVRSAAC 309 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc----cccc-hhhhhhHHHHHHHh
Confidence 88888877765 7788888888888999999999888887777766654422111 1111 11111111111111
Q ss_pred CCChHHHHHHH------------HHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC---chhHHHHHH
Q 038516 397 MGDGECAIKLF------------CKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGV---EMSVCGSLV 461 (708)
Q Consensus 397 ~~~~~~A~~~~------------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~ 461 (708)
.| ..|.+.+ ++..-.|+.-....|...... ..+|.-++..++...+...-... ++..+..+
T Consensus 310 rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~- 385 (1088)
T KOG4318|consen 310 RG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL- 385 (1088)
T ss_pred cc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHH-
Confidence 22 2222222 111112222222222222211 12344444444444332211111 11122222
Q ss_pred HhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHh---cCChHHHHHHHHHH------------HH----CCCCC----
Q 038516 462 DMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSH---YGMAEEAFMVFEVI------------LE----HGLRP---- 518 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p---- 518 (708)
+.+.|.++..+...+......+... ..+..+..+++... .. +-..|
T Consensus 386 -----------lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 386 -----------LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred -----------HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 2233333322211111111111111 11111111111111 10 00111
Q ss_pred ---ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CCHHHH
Q 038516 519 ---DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSE----IRIELW 591 (708)
Q Consensus 519 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 591 (708)
-...-+.++..|++.-+..+++..-+.....-+ ...|..|++.+....+.++|..+.++..... .+...+
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 011233455556665555666544444333211 1568899999999999999999998873221 234456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEE
Q 038516 592 RTLLSTCVAKRNSRMVIQAAEQVLRL---DPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI 662 (708)
Q Consensus 592 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 662 (708)
..+.....+.+....+..++++..+. .|.-......+.+-....|+.+.-.++++-+.+.|+.. .|.-|.
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 77777788888888888888876652 34344555666667777899999999999998888876 354443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.61 E-value=1.9e-15 Score=147.13 Aligned_cols=215 Identities=18% Similarity=0.195 Sum_probs=112.1
Q ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHH
Q 038516 431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVF 508 (708)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (708)
..++.+.|...++.+...+. .++..+..++.. ...+++++|.+++.... .++...+..++..+.+.++++++.+++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred cccccccccccccccccccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444443332 134445556665 57788888888877663 356667778888889999999999999
Q ss_pred HHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C
Q 038516 509 EVILEHG-LRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYS-E 585 (708)
Q Consensus 509 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 585 (708)
+++.... .+++...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..+...|+.+++.++++..... +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 9987643 234556677777788999999999999999987 5565 677888999999999999988887766221 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
.++..|..+..++...|+.++|...++++++.+|+|+.....++.++...|+.++|.++++++.
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5677899999999999999999999999999999999999999999999999999999988664
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.4e-12 Score=122.97 Aligned_cols=413 Identities=13% Similarity=0.069 Sum_probs=240.5
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC-hhhHHHHHHhcccC
Q 038516 187 IILGNFKNDKMKEGLSLFGAMVGSGVNPT-QFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVD-LPLENALLDMYSKC 264 (708)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 264 (708)
..+-|.++|++++|++.|...++ ..|+ ...|.....+|...|+|+++.+.-...++.+ |+ +..+..-..++-..
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhh
Confidence 44567889999999999999988 4777 6778888888889999998887777666543 32 34555556677777
Q ss_pred CChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHH---------HHH-cCCCCCCHhHHHHHHHHHcCCCCc
Q 038516 265 SDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVA---------LRR-MSLLKPDEYTFAAIISATSALPAS 334 (708)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~-~~~~~p~~~t~~~ll~~~~~~~~~ 334 (708)
|++++|+.= +|-.++...+....-.--+.+++++ +.. ...+.|+.....+.+..+...-..
T Consensus 197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 888777531 1222233322222211122222221 221 223456655555444443221100
Q ss_pred cchHHHHHHHHHHCCCCchhHHhHHHHHHHh--cC---CChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHH
Q 038516 335 AYGKPLHALVIKTGYDSSVFVGTTLLNMYFK--NG---DAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCK 409 (708)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 409 (708)
....+.......+..++.. .+ .+..|...+.+-... ...... .+..+.-++..-+
T Consensus 268 ------------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~------~~~~~~--~n~~d~~le~~A~ 327 (606)
T KOG0547|consen 268 ------------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG------SESSLS--VNEIDAELEYMAE 327 (606)
T ss_pred ------------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh------hhhhcc--ccccchhHHHHHH
Confidence 0000000011111111100 01 122222222111000 000000 0000000000000
Q ss_pred -HhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCCh
Q 038516 410 -MCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDL 485 (708)
Q Consensus 410 -m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 485 (708)
+.-.| || +.-.|+.-.+..-++..++....+ ...|--+..+|....+.++....|+... +.|+
T Consensus 328 al~~~g------tF------~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~ 394 (606)
T KOG0547|consen 328 ALLLRG------TF------HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP 394 (606)
T ss_pred HHHHhh------hh------hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC
Confidence 00000 11 111344444444444444433221 1224455566777777778888887664 4567
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL 564 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (708)
.+|..-...+.-.+++++|..=|++.+. +.|+ ...|..+--+..+.+++++++..|++.++ .++-.++.|+.....
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAei 471 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEI 471 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHH
Confidence 7788878888888899999999999988 4664 45566666667788899999999999887 454457888889999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 565 LSRAGLLDEAENLIAESPYSEIR---------IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
+..++++++|.+.|+.+-...|. +.+-..++-.-. .+|+..|+.++.++++++|....+|..|+.+...+
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQR 550 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 99999999999999887211122 222222222222 48999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHh
Q 038516 636 GRWDCVAKMRRKMK 649 (708)
Q Consensus 636 g~~~eA~~~~~~~~ 649 (708)
|+.++|+++|++..
T Consensus 551 ~~i~eAielFEksa 564 (606)
T KOG0547|consen 551 GKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999999764
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.3e-12 Score=121.28 Aligned_cols=214 Identities=14% Similarity=0.178 Sum_probs=177.7
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLS 528 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 528 (708)
-+.+...+.+.|+-.++.++|...|++.++ .....|+.+.+-|...++...|++-++.+++- .| |...|-.|.+
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhH
Confidence 345666778888888999999999998864 34568999999999999999999999999994 55 7888999999
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
+|.-.+...-|+-+|++..+ ++| |...|.+|+++|.+.++.++|.+.|.++ .....+...+..|+..+.+.++.++
T Consensus 407 aYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999987 666 5889999999999999999999999998 2222466889999999999999999
Q ss_pred HHHHHHHHHh-------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCc
Q 038516 607 VIQAAEQVLR-------LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHP 679 (708)
Q Consensus 607 a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (708)
|.+++++-++ .+|+...+..-|+.-+.+.+++++|..+......- .+
T Consensus 485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--------------------------~~ 538 (559)
T KOG1155|consen 485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--------------------------ET 538 (559)
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------------------------Cc
Confidence 9999999987 44555555667888899999999999877655432 45
Q ss_pred chHHHHHHHHHHHHHHH
Q 038516 680 KIDDAQAELHRLRGNMR 696 (708)
Q Consensus 680 ~~~~~~~~l~~l~~~~~ 696 (708)
..+|..+.++++++.+.
T Consensus 539 e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 539 ECEEAKALLREIRKIQA 555 (559)
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 77778888877776655
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=5.8e-13 Score=132.58 Aligned_cols=273 Identities=13% Similarity=0.060 Sum_probs=136.4
Q ss_pred ChhHHHHHhhcCCC--CE-eeehhhHHHHhcCCChHHHHHHHHHHhHCC-Cc-cCHHHHHHHHHHHhCcccHHHHHHHHH
Q 038516 369 AESPQKVFMLIAEK--DI-VLWTEMIIGHSRMGDGECAIKLFCKMCREG-LK-CDNFALSGALSACADLAILKQGEMIHS 443 (708)
Q Consensus 369 ~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~ 443 (708)
..+|...|..+... |+ .....+..+|...+++++|.++|+.+.+.. .. -+..+|.+.|..+-+. -+...+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 44555555554332 22 222335556666666666666666665431 11 1233455444433211 1111111
Q ss_pred -HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038516 444 -QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD 519 (708)
Q Consensus 444 -~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 519 (708)
.+.+. -+..+.+|.++.++|.-+++.+.|++.|++.++ | ...+|+.+..-+.....+|.|...|+..+. +.|+
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 11111 134455566666666666666666666665542 2 334555555555555566666666665554 2332
Q ss_pred -hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516 520 -EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS 596 (708)
Q Consensus 520 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 596 (708)
...|..+...|.+.++++.|+-.|+++.+ +.|. ......++..+.+.|+.++|+.+++++ ...+.++..--.-+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 22344444455666666666666665554 4443 333444555555666666666666655 222123333333334
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+...+++++|.+.++++.++-|++...+..+|.+|.+.|+.+.|..-|-.+.+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 444555666666666666666666666666666666666666666555554443
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8e-11 Score=112.10 Aligned_cols=285 Identities=13% Similarity=0.109 Sum_probs=202.8
Q ss_pred HhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-C-CchhHHHHHHHhhHhcCCHH
Q 038516 394 HSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGH-G-VEMSVCGSLVDMYAKNGDLR 471 (708)
Q Consensus 394 ~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~ 471 (708)
+......+++..-.......|.+-....-+....+.-...++++|..+|+.+.+... . .|..+|+.++-.-..+.++.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 333344555555555555555444443333333334456667777777777666521 1 14455555442222211111
Q ss_pred -HHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516 472 -AAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEH 549 (708)
Q Consensus 472 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 549 (708)
-|..++ .+-+--+.|..++.+-|.-.++.++|+.+|++.++ +.|.. ..|+.+..-|...++...|.+-++.+++
T Consensus 317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd- 392 (559)
T KOG1155|consen 317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD- 392 (559)
T ss_pred HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence 122222 22223344555666777788899999999999999 46765 4466666689999999999999999997
Q ss_pred CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516 550 SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL 627 (708)
Q Consensus 550 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 627 (708)
+.| |-..|-.|+++|.-.+...-|+-+|+++ ..+|.|+..|..|+.+|.+.++.++|+..|++++.....+..++..
T Consensus 393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 555 5778999999999999999999999999 5565689999999999999999999999999999998888899999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhc
Q 038516 628 LSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDE 702 (708)
Q Consensus 628 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 702 (708)
|+++|.+.++.++|...+++..+.-. .. | ...|++.++...|.+-..++++..++.
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~----------~e--------g-~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSE----------LE--------G-EIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH----------hh--------c-ccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 99999999999999999987765210 00 0 015778888888999888888876553
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=5.1e-10 Score=106.89 Aligned_cols=482 Identities=12% Similarity=0.118 Sum_probs=325.8
Q ss_pred HhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHhccCChhH
Q 038516 159 MYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQF-SYSMLLNACSRMGNFVC 234 (708)
Q Consensus 159 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~ 234 (708)
.=...+++..|.++|+.... .+...|--.+..-.++.....|..++++.... -|-+. .|..-+..=-..|++..
T Consensus 82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence 33445666777777765543 45666766777777777788888887777653 33222 12222223345677788
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 038516 235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIE--NPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMS 312 (708)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 312 (708)
|+++|+.-.+. .|+...|++.++.=.+...++.|..++++.. .|++.+|--...-=.++|+...|..+|....+.-
T Consensus 160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 88888776653 6788888888888888888888888887754 4788888777777777888888888887776541
Q ss_pred CC-CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCc--hhHHhHHHHHHHhcCCChhHHHHH--------hhcCC
Q 038516 313 LL-KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSS--VFVGTTLLNMYFKNGDAESPQKVF--------MLIAE 381 (708)
Q Consensus 313 ~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~ 381 (708)
|- .-+...|.+....-.+...++.|..++...++.- |.+ ...|..+...--+-|+.....+.. +.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 11 1112233333333345566777777887777653 322 445555555555666655554433 23333
Q ss_pred CC---EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH-------HHHHHHHHHH---hCcccHHHHHHHHHHHHHh
Q 038516 382 KD---IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN-------FALSGALSAC---ADLAILKQGEMIHSQAEKT 448 (708)
Q Consensus 382 ~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~ 448 (708)
.| -.+|-..+..--..|+.+...++|++.+.. ++|-. ..|.-+--+| ....+.+.+.++++...+
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 33 445555666667789999999999998865 45532 1222221122 356788999999998887
Q ss_pred CCCCchhHHHHHHHhh----HhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChH
Q 038516 449 GHGVEMSVCGSLVDMY----AKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEI 521 (708)
Q Consensus 449 ~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 521 (708)
-++....++..+--+| .++.++..|.+++...+ -|...+|...|..-.+.++++.+..++++.++- .| |..
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~ 472 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCY 472 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhH
Confidence 3455566666554444 47889999999999875 588889999999999999999999999999995 55 667
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV- 599 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~- 599 (708)
+|.-....-...|+.+.|..+|+-+++. .+......|-+.++.=...|.++.|..+++++....+...+|.++...-.
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s 552 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS 552 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence 7887777778899999999999999986 33334556777778888999999999999998655566678888876544
Q ss_pred ----hcC-----------CHHHHHHHHHHHHhc----CCCCcc--hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 600 ----AKR-----------NSRMVIQAAEQVLRL----DPEDGT--THILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 600 ----~~~-----------~~~~a~~~~~~~~~~----~p~~~~--~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
..+ +...|..+|+++... .|.... .+..+-+.-...|...+...+-.+|.
T Consensus 553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 234 567888889888753 343322 22233334444576666666666653
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2e-11 Score=110.86 Aligned_cols=182 Identities=13% Similarity=0.054 Sum_probs=133.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH
Q 038516 488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS-LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS 566 (708)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (708)
|..|...+....+.+.|..++.+..+. .|+.+--++ +.......|+++.|.+.|+...+.+..--..+...|..+|.
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~ 260 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA 260 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 445556666677888888888888875 454443333 34477788888888888888887654444667778888888
Q ss_pred hcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCCchHHHHH
Q 038516 567 RAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA--TGRWDCVAKM 644 (708)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~eA~~~ 644 (708)
..|+.++...++.++....+.......+........-.+.|...+.+-+...|+-...|..+.--... .|++.+....
T Consensus 261 ~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~ 340 (389)
T COG2956 261 QLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDL 340 (389)
T ss_pred HhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHH
Confidence 88999888888888744445666666665555555667778888888888888866655544433333 4678888999
Q ss_pred HHHHhcCCCccCCceeEEEecCeEEEE
Q 038516 645 RRKMKGSMLGKEPGLSWIEAKNNVHVF 671 (708)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (708)
++.|....++..|.+.+..++...|.|
T Consensus 341 lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 341 LRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred HHHHHHHHHhhcCCceecccCCcceee
Confidence 999999999999999999999888877
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=1.2e-12 Score=130.25 Aligned_cols=280 Identities=13% Similarity=0.063 Sum_probs=214.5
Q ss_pred CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC------CEeeehhhHHHHhcCCChHHHHHH
Q 038516 333 ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK------DIVLWTEMIIGHSRMGDGECAIKL 406 (708)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~ 406 (708)
+..+|...|..+. ..+.-+..+...+..+|+..+++++|+++|+.+.+. +...|++.+-.+.+. -++..
T Consensus 334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 3456666666633 333444577788889999999999999999988763 556666665443321 12222
Q ss_pred H-HHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCCh
Q 038516 407 F-CKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDL 485 (708)
Q Consensus 407 ~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 485 (708)
+ +++.+. -+-.+.+|..+-..|+-+++.+.|.+.|+...... +-....|+.+..=+.....+|.|..-|+..+..|.
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 222222 24456789999999999999999999999887653 22567888888888889999999999999987776
Q ss_pred HHHHH---HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHH
Q 038516 486 KCWNA---LLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSC 560 (708)
Q Consensus 486 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ 560 (708)
..||+ +...|.+.++++.|+-.|+++.+ +.| |.+....+...+.+.|+.++|+.+++++... .| ++..-..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHH
Confidence 66555 77889999999999999999998 567 4566777777899999999999999999874 34 2344444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 561 MVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
.+..+...+++++|+..++++.. .|.+..++..++..|.+.|+.+.|+.-+--+.+++|....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 67888999999999999999833 3235677888889999999999999999999999998654
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=2e-11 Score=124.37 Aligned_cols=275 Identities=11% Similarity=0.026 Sum_probs=160.9
Q ss_pred cCCChhHHHHHhhcCCC--CEee-ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHH--HHHHHHhCcccHHHHHH
Q 038516 366 NGDAESPQKVFMLIAEK--DIVL-WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALS--GALSACADLAILKQGEM 440 (708)
Q Consensus 366 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~ 440 (708)
.|+++.|++.+....+. ++.. |........+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777776655442 1222 222233336677777777777777653 44443222 22345566777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC---Ch--------HHHHHHHHHHHhcCChHHHHHHHH
Q 038516 441 IHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP---DL--------KCWNALLGGYSHYGMAEEAFMVFE 509 (708)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 509 (708)
.++.+.+.. +.++.....+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777766654 445666667777777777777777777666421 11 123333333334444555555555
Q ss_pred HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCH
Q 038516 510 VILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRI 588 (708)
Q Consensus 510 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 588 (708)
.+.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++.+....++.+++++.+++.. ..|.++
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 55433 233555566666677777777777777776665 23333222 2223334467777777776662 232345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
..+..++..|...+++++|...++++++.+|++.. +..|+.++.+.|+.++|.+.+++..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55666667777777777777777777777776544 5567777777777777777766543
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-10 Score=113.77 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=133.8
Q ss_pred CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 038516 451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL 527 (708)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 527 (708)
+..+.+|-++.-.|.-.|+.++|++.|.+... .-...|-.+..+|+-.|..++|+..+..+.+. ++-....+..+.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 33445555666666666777777777776542 23456777777777777888887777777664 222333344444
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-CHHHHHHHHHHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESP-------YSEI-RIELWRTLLSTC 598 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~~l~~~~ 598 (708)
--|.+.+..+.|.++|..... +-| |+..++-++-.....+.+.+|..+|+... .+.+ -..+++.|+.+|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 456677777888888777764 555 35566666666667777777777776651 1101 233467777778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
++.+.+++|+..+++++.+.|.++++|..+|-+|...|+++.|.+.|.+...
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888887654
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.2e-10 Score=108.25 Aligned_cols=422 Identities=13% Similarity=0.113 Sum_probs=280.6
Q ss_pred ccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCH-hHHHHHHHHHcCCCCccch
Q 038516 262 SKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDE-YTFAAIISATSALPASAYG 337 (708)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a 337 (708)
..++++..|.++|++... .++..|--.+..=.++.++..|..+++..... -|.+ ..|-.-+..-...|++..|
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHH
Confidence 344556666666666654 45555666666666666777777777666643 2332 2233333333455677777
Q ss_pred HHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcC--CCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCC
Q 038516 338 KPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIA--EKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGL 415 (708)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~ 415 (708)
.++|+.-.+. .|+...|++.|+.-.+-..++.|..++++.. .|++.+|-....---++|....|..+|....+.
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~-- 236 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF-- 236 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence 7777665543 5777777777777777777777777777643 355566655555556677777777777666542
Q ss_pred ccCHH----HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC-chhHHHHHHHhhHhcCCHHHHHHHH--------hhCC-
Q 038516 416 KCDNF----ALSGALSACADLAILKQGEMIHSQAEKTGHGV-EMSVCGSLVDMYAKNGDLRAAESIF--------SQVL- 481 (708)
Q Consensus 416 ~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~- 481 (708)
-.|.. .|.++..--..+..++.|..+++...+.-.+. ....|..+...--+-|+........ +.++
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 11222 23333333345677888888888777653211 2345555554444556644443332 2222
Q ss_pred --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-------HHHHHHHHH---hccCcHHHHHHHHHHhhHC
Q 038516 482 --HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-------TFLSLLSAC---SHSGLVERGKILWNQMKEH 549 (708)
Q Consensus 482 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~ 549 (708)
+-|-.+|--.+..-...|+.+...++|++++.. ++|-.. .|..+=.+| ....+++.+.++|+..++
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~- 394 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD- 394 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 246778888888888899999999999999986 666321 122222222 357899999999999987
Q ss_pred CCCcC-hHHHHHH----HHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 550 SLIPG-HKHYSCM----VSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 550 ~~~p~-~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
+.|. ..+|.-+ +....|+.++..|.+++..+-..-|...++...+..-.+.++.|....+|++.++.+|.+..+
T Consensus 395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 5665 3444433 344458899999999998884444888999999999899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 038516 625 HILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRK 697 (708)
Q Consensus 625 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 697 (708)
|...+.+-...|+++.|+-+|..+.++..--.|..-|- ....|-.....++.++.+|+.|-+..+-++-
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 99999999999999999999999988765555544432 1114444555677788888877665554443
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=2e-11 Score=124.46 Aligned_cols=255 Identities=10% Similarity=-0.025 Sum_probs=155.2
Q ss_pred cCCCCccchHHHHHHHHHHCCCCchhHHh--HHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHH
Q 038516 329 SALPASAYGKPLHALVIKTGYDSSVFVGT--TLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECA 403 (708)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A 403 (708)
...|+.+.+...+..+.+. .|+..... .....+...|+++.|...++.+.+. +......+...|.+.|++++|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a 206 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL 206 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 4444555555555444432 23322111 2234455555555555555554432 333444555566666666666
Q ss_pred HHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--
Q 038516 404 IKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-- 481 (708)
Q Consensus 404 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 481 (708)
.+++..+.+.+..++. ....+- ...+..++.......+.+...++++.++
T Consensus 207 ~~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~ 258 (398)
T PRK10747 207 LDILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK 258 (398)
T ss_pred HHHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 6666666655433211 111000 0011122222233344556666666664
Q ss_pred -CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHH
Q 038516 482 -HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSC 560 (708)
Q Consensus 482 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 560 (708)
+.++.....+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+. .+-|...+.+
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~ 333 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWST 333 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHH
Confidence 356777788888888888888888888888873 4554222 233444558888888888888762 2234556778
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516 561 MVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD 618 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 618 (708)
++..+.+.|++++|.+.|+.+....|+...+..+...+...|+.++|..++++.+.+.
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888889999999999988885555888888888888888999999999998887754
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=3.2e-11 Score=123.66 Aligned_cols=249 Identities=13% Similarity=0.025 Sum_probs=132.1
Q ss_pred cCCChHHHHHHHHHHhHCCCccCHH-HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516 396 RMGDGECAIKLFCKMCREGLKCDNF-ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE 474 (708)
Q Consensus 396 ~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 474 (708)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+++....+..-.+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356666666666555443 23322 222333444555666666666666554331222223333456666677777777
Q ss_pred HHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHH---HHhccCcHHHHHHHHHHhh
Q 038516 475 SIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFL-SLLS---ACSHSGLVERGKILWNQMK 547 (708)
Q Consensus 475 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~---~~~~~~~~~~a~~~~~~~~ 547 (708)
+.++.+. +.+...+..+...+.+.|++++|.++++++.+.++. +...+. .-.. .....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7776664 224555666666777777777777777777766533 222221 1111 1122222222233333333
Q ss_pred HCC---CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 548 EHS---LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIEL---WRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 548 ~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
+.. .+.+...+..++..+...|+.++|.+.+++.....|+... ...........++.+.+.+.+++.++..|++
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 321 1124556666667777777777777777666332233321 1111112223456666777777777777777
Q ss_pred c--chHHHHHHHHHhcCCchHHHHHHHH
Q 038516 622 G--TTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 622 ~--~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
+ .....+|+++.+.|+|++|.+.|++
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 7 6666777777777777777777764
No 50
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.1e-10 Score=111.78 Aligned_cols=212 Identities=14% Similarity=0.103 Sum_probs=165.1
Q ss_pred HhcCCHHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHH
Q 038516 465 AKNGDLRAAESIFSQVLH--P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGK 540 (708)
Q Consensus 465 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~ 540 (708)
.-+|+.-.|..-|+..+. | +...|--+...|.+..+.++-...|.+..+. .| |..+|..-.....-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHH
Confidence 346777888888877752 2 3334777778899999999999999999884 44 5677877777777888999999
Q ss_pred HHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516 541 ILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD 618 (708)
Q Consensus 541 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 618 (708)
.-|++.++ +.|+ ...|-.+.-++.|.+++++++..|++...+.| -+++++.....+..+++++.|++.|+++++++
T Consensus 415 aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99999887 6665 56677788888899999999999988844434 47889999999999999999999999999999
Q ss_pred CC------CcchHHHHHHHHHh-cCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHH
Q 038516 619 PE------DGTTHILLSNLYAA-TGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRL 691 (708)
Q Consensus 619 p~------~~~~~~~l~~~~~~-~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 691 (708)
|. ++.++++-+-+..+ .++++.|..+++++.+. .|+.+..+.-+.++
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------------------------Dpkce~A~~tlaq~ 546 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------------------------DPKCEQAYETLAQF 546 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------------------------CchHHHHHHHHHHH
Confidence 99 76666644433322 38888899888877653 67888888888888
Q ss_pred HHHHHhhhhhccccc
Q 038516 692 RGNMRKLVTDEFGKE 706 (708)
Q Consensus 692 ~~~~~~~~~~~~~~~ 706 (708)
.-++++..++|..+|
T Consensus 547 ~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 547 ELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHhhHHHHHHHHH
Confidence 888887777776554
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=1.1e-10 Score=119.87 Aligned_cols=140 Identities=12% Similarity=0.026 Sum_probs=77.6
Q ss_pred HHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH---HHHHHHHhccCcHHHHHHHHH
Q 038516 471 RAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF---LSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 471 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~ 544 (708)
+...+.++..+. .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~-------- 315 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDN-------- 315 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCCh--------
Confidence 334444444432 36677777777888888888888888888774 4444221 1111111222333
Q ss_pred HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCC
Q 038516 545 QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRI--ELWRTLLSTCVAKRNSRMVIQAAE--QVLRLDP 619 (708)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p 619 (708)
+.+.+.+++. ...|.++ .+..++++.|.+.|++++|.+.++ .+++..|
T Consensus 316 ---------------------------~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p 368 (409)
T TIGR00540 316 ---------------------------EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL 368 (409)
T ss_pred ---------------------------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence 3334444333 1111233 455566666666666666666666 4555666
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 620 EDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
++.. +.+++.++.+.|+.++|.+++++.
T Consensus 369 ~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 369 DAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544 446677777777777776666654
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.45 E-value=4.2e-13 Score=130.69 Aligned_cols=252 Identities=15% Similarity=0.152 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCChhHHHHHhhc-CC----CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCc
Q 038516 358 TLLNMYFKNGDAESPQKVFMLI-AE----KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL 432 (708)
Q Consensus 358 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 432 (708)
.+...+.+.|++++|.++++.. .. .+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3455566666666666666432 11 24445555555555666677777777766654322 23334444444 566
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHhcCChHHHHHH
Q 038516 433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSHYGMAEEAFMV 507 (708)
Q Consensus 433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (708)
+++++|..+.....+. .+++..+..++..+.+.|+++++.++++.+. +++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6667776666544332 2455556677777888888888888887752 45777888888999999999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 038516 508 FEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SE 585 (708)
Q Consensus 508 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 585 (708)
+++.++. .|+ ......++..+...|+.+++.++++...+.. +.+...+..++.+|...|+.++|+..+++... .+
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999995 675 6667788889999999999888888887743 44556778889999999999999999998833 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
.|+.++..+..++...|+.++|..+.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4788888889999999999999999888765
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=4.7e-11 Score=113.60 Aligned_cols=198 Identities=17% Similarity=0.105 Sum_probs=166.2
Q ss_pred CchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516 452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528 (708)
Q Consensus 452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 528 (708)
.....+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 345667778889999999999999998875 3456788889999999999999999999999863 334566777788
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCC-cChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLI-PGHKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
.+...|++++|.+.+++..+.... .....+..++..+...|++++|...+++.. ..+.+...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999999875322 235567778899999999999999999873 332356778888889999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
|...++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999998888888999999999999999999887754
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=3.9e-08 Score=97.90 Aligned_cols=538 Identities=11% Similarity=0.118 Sum_probs=267.9
Q ss_pred hhhHHHHHHhccCChHHHHHHhhcCC-----CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 038516 50 MYNNVLSMYGRCGSIRDARQVFDEIP-----KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQA 124 (708)
Q Consensus 50 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 124 (708)
.|-.-+....+.|++..-+..|+... ......|...+.-....+- ++.++.++++-..- .| ..-.--+..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~l-Pets~rvyrRYLk~--~P--~~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGL-PETSIRVYRRYLKV--AP--EAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCC-hHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 34444555555666666666666532 1233456666655555555 66777777766542 22 224445566
Q ss_pred hccccchHHHHHHHHHHHHhC------CCCchhHHhHHHHHhHhCCChh---HHHHHhccCCC--CC--cccHHHHHHHH
Q 038516 125 VSLLEDQLMGSLLHAQVIKYG------SSEDTCVQTSLLGMYSNCGDFE---SAKRIFGLIGD--KD--AVAWNSIILGN 191 (708)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~li~~~ 191 (708)
++..+++++|.+.+..++... .+.+-..|.-+.+..++.-+.- ....+++.+.. +| ...|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 666677777666665554332 1334445555555544442211 12222333222 12 34577777777
Q ss_pred hcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHH
Q 038516 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAF 271 (708)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 271 (708)
.+.|.++.|.++|++.... ..+..-|+.+.++|++-...--+..+ +...+.+..+. ..-+++-.+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~e------------d~~dl~~~~ 323 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEE------------DDVDLELHM 323 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChh------------hhhhHHHHH
Confidence 7777777777777766543 23444455555555432211111100 00000000000 001222333
Q ss_pred HHHhccCC---------------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccc
Q 038516 272 SVFTRIEN---------------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAY 336 (708)
Q Consensus 272 ~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 336 (708)
..|+.+.. .++..|..-+. +..|+..+-...|.+..+. +.|....
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~---------------- 383 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAV---------------- 383 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCC----------------
Confidence 33443332 12223322222 2244455555555555543 3332110
Q ss_pred hHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEee-------ehhhHHHHhcCCChHHHHHHHHH
Q 038516 337 GKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVL-------WTEMIIGHSRMGDGECAIKLFCK 409 (708)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~A~~~~~~ 409 (708)
..-...|..+.+.|-..|+++.|+.+|+...+-+-.. |......=.++.+++.|++++++
T Consensus 384 -------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 384 -------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred -------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 0011233444444555555555555555444332221 22222222344455555555444
Q ss_pred HhHC-----------CCcc------CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516 410 MCRE-----------GLKC------DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA 472 (708)
Q Consensus 410 m~~~-----------g~~p------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 472 (708)
...- +.++ +...|...++.-...|-++....+++.+.+..+. ++.+.......+....-+++
T Consensus 451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfee 529 (835)
T KOG2047|consen 451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEE 529 (835)
T ss_pred hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHH
Confidence 3211 0111 1223444455555567788888888888887653 33333334444556677899
Q ss_pred HHHHHhhCC----CCCh-HHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChHHHHHHHH--HHhccCcHHHHHHH
Q 038516 473 AESIFSQVL----HPDL-KCWNALLGGYSHY---GMAEEAFMVFEVILEHGLRPDEITFLSLLS--ACSHSGLVERGKIL 542 (708)
Q Consensus 473 A~~~~~~~~----~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~ 542 (708)
+.++|++-+ .|++ ..|+..+.-+.+. ...+.|..+|++.++ |.+|...-+..|+. .-..-|....|+++
T Consensus 530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi 608 (835)
T KOG2047|consen 530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI 608 (835)
T ss_pred HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999998774 3554 4788877666542 368899999999999 66776443333333 23345888888899
Q ss_pred HHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhc
Q 038516 543 WNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT---LLSTCVAKRNSRMVIQAAEQVLRL 617 (708)
Q Consensus 543 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~ 617 (708)
+++... ++++. ...|+.++.-....=-...-..+|+++-..-|+...-.. ....-.+.|..+.|..++.-.-++
T Consensus 609 yerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 609 YERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 888765 34443 345666554322211112222333333111133333222 222345578888888888777765
Q ss_pred C-CC-CcchHHHHHHHHHhcCCchHHHH
Q 038516 618 D-PE-DGTTHILLSNLYAATGRWDCVAK 643 (708)
Q Consensus 618 ~-p~-~~~~~~~l~~~~~~~g~~~eA~~ 643 (708)
. |. +...|...-.--.+.|+-+--.+
T Consensus 688 ~dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 688 CDPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred CCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 3 44 33456666666667777443333
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=9e-10 Score=103.59 Aligned_cols=286 Identities=15% Similarity=0.060 Sum_probs=180.5
Q ss_pred CCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHH
Q 038516 194 NDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSV 273 (708)
Q Consensus 194 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 273 (708)
.|++..|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-.++.++.+....++..+.-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 577777777777766654332 2345566666677788888888888777764456666677777777788888888777
Q ss_pred HhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516 274 FTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD 350 (708)
Q Consensus 274 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (708)
.+++.+ .++.......++|.+.|++.....++.++.+. +.--|+..- .
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~----------------------------~ 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAA----------------------------R 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHH----------------------------H
Confidence 666554 56677788888888888888888888888887 544443211 0
Q ss_pred CchhHHhHHHHHHHhcCCChhHHHHHhhcCC---CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHH
Q 038516 351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIAE---KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALS 427 (708)
Q Consensus 351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 427 (708)
....++..+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|...+ +-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HH
Confidence 0112333444444444444444455555543 2455556677777888888888888888888777766322 22
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHH
Q 038516 428 ACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAF 505 (708)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 505 (708)
.+.+.++...-.+..+...+.. +.++..+..|...|.+.+.+.+|...|+... .|+..+|+.+..+|.+.|++.+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 3445555555544444433322 2333556666666666666666666666553 466666666666666666666666
Q ss_pred HHHHHHHHC
Q 038516 506 MVFEVILEH 514 (708)
Q Consensus 506 ~~~~~m~~~ 514 (708)
+..++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 666665543
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=1.5e-09 Score=102.07 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=163.9
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHH
Q 038516 295 NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQK 374 (708)
Q Consensus 295 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 374 (708)
.|+|.+|.++..+-.+. + .-....|..-..+.-..|+.+.+.+++.++.+.--.++..+.-+..+.....|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 56777777776665544 2 222334555556666677777777777776665445566666666677777777777776
Q ss_pred HHhhcCC---CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC
Q 038516 375 VFMLIAE---KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHG 451 (708)
Q Consensus 375 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 451 (708)
-.+++.+ .++........+|.+.|++.+...++..|.+.|.--+...-.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 6665443 355666667777888888888888888887776544332110
Q ss_pred CchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516 452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528 (708)
Q Consensus 452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 528 (708)
....+++.+++=....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+ ...+-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHH
Confidence 001122223322222233333333444443 33455555666666777777777777777777665555 22223
Q ss_pred HHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMV 607 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 607 (708)
.+.+-++...-++..+.-.+. +-.| ..+.+|+..|.+.+.|.+|.+.++.+....|+...|..+..++.+.|+.++|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 455555555555555554442 3223 4555666666666666666666665533336666666666666666666666
Q ss_pred HHHHHHHH
Q 038516 608 IQAAEQVL 615 (708)
Q Consensus 608 ~~~~~~~~ 615 (708)
.+..++++
T Consensus 381 ~~~r~e~L 388 (400)
T COG3071 381 EQVRREAL 388 (400)
T ss_pred HHHHHHHH
Confidence 66666555
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-08 Score=96.00 Aligned_cols=274 Identities=12% Similarity=0.014 Sum_probs=176.9
Q ss_pred CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehh---hHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516 350 DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTE---MIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL 426 (708)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 426 (708)
+.|......+.+.+...|+.++|...|+....-|+.+... ..-.+.+.|+.+....+...+.... .-....|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3344444455555555555555555555444333222111 1222344555555555555544321 00111111112
Q ss_pred HHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--C-CChHHHHHHHHHHHhcCChHH
Q 038516 427 SACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--H-PDLKCWNALLGGYSHYGMAEE 503 (708)
Q Consensus 427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~ 503 (708)
...-...+++.|..+-...++.+ +.+...+-.-..++...|+.++|.-.|+... . -+..+|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 22233455555555555544432 1222333333456678899999999998764 3 478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHH-HH-HhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516 504 AFMVFEVILEHGLRPDEITFLSLL-SA-CSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAE 580 (708)
Q Consensus 504 A~~~~~~m~~~g~~p~~~~~~~ll-~~-~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (708)
|.-+-+..... +..+..+...+. .. +.....-++|.+++++... +.|+ ......+...+.+.|+++++..++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99988887765 444666665553 22 3334456889999988776 6676 55677788999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 581 SPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 581 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
.....||....+.|+..+...+.+++|...|..++.++|++-.+...|
T Consensus 464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 866668999999999999999999999999999999999986644433
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=4e-08 Score=97.86 Aligned_cols=530 Identities=13% Similarity=0.131 Sum_probs=292.2
Q ss_pred hHHhHHHHHhHhCCChhHHHHHhccCCC-----CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 038516 151 CVQTSLLGMYSNCGDFESAKRIFGLIGD-----KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNA 225 (708)
Q Consensus 151 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 225 (708)
.+|-..+....++|++..-...|+.... .....|...+.-..+.+-++.++.+|++.++. .|. .-.--|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence 4445555555555555555555543221 23345666666555666666666666666542 222 24444555
Q ss_pred HhccCChhHHHHHHHHHHHh------CCCCChhhHHHHHHhcccCCCh---HHHHHHHhccCC--CC--hhHHHHHHHHH
Q 038516 226 CSRMGNFVCGKVIHARVIIS------NTQVDLPLENALLDMYSKCSDT---QTAFSVFTRIEN--PD--LVSWNSMIAGY 292 (708)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~--~~--~~~~~~li~~~ 292 (708)
++..+++++|.+.+..++.. ..+.+...|..+.+..++.-+. -....+++.+.. +| ...|++|..-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 55666666666665555422 1233444555555544443322 223334444433 22 23466666666
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC----------------CCC------ccchHHHHHHHHHHC--
Q 038516 293 MENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA----------------LPA------SAYGKPLHALVIKTG-- 348 (708)
Q Consensus 293 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----------------~~~------~~~a~~~~~~~~~~~-- 348 (708)
.+.|.+++|.++|++.... ..+..-|..+..+|+. .++ ++....-|+.+...+
T Consensus 259 Ir~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 6666666666666665543 2222223333322221 111 111122233322221
Q ss_pred ---------CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---------CEeeehhhHHHHhcCCChHHHHHHHHHH
Q 038516 349 ---------YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---------DIVLWTEMIIGHSRMGDGECAIKLFCKM 410 (708)
Q Consensus 349 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m 410 (708)
-+.+...|..-+..+ .|+..+-...+.+.... -...|..+...|-.+|+.+.|..+|++.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 122333333333322 34555555555554321 2246888899999999999999999988
Q ss_pred hHCCCccC---HHHHHHHHHHHhCcccHHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHhhHhcCCH
Q 038516 411 CREGLKCD---NFALSGALSACADLAILKQGEMIHSQAEKT-----------GHGV------EMSVCGSLVDMYAKNGDL 470 (708)
Q Consensus 411 ~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~g~~ 470 (708)
.+-..+-- ..+|..-...-.+..+++.|..+.+....- +.++ +..+++.+++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 76443221 123333333334566788888877665421 1122 234555566666778899
Q ss_pred HHHHHHHhhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhc---cCcHHHHHHHH
Q 038516 471 RAAESIFSQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSH---SGLVERGKILW 543 (708)
Q Consensus 471 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~ 543 (708)
+....+|++++.- ++...-.....+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+ ....+.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999988642 2222222222334455678899999887776445664 346666664433 34789999999
Q ss_pred HHhhHCCCCcChHH--HHHHHHHHHhcCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516 544 NQMKEHSLIPGHKH--YSCMVSLLSRAGLLDEAENLIAESPYSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD 618 (708)
Q Consensus 544 ~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 618 (708)
++..+ |.+|...- |-.....=.+-|.-..|+.+++++...-+ ....|+..+.-....=-+..-..+|+++++.-
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L 652 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL 652 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence 99998 77776332 32233333467888999999999843312 23345555544333323445678899999988
Q ss_pred CCCcch--HHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 038516 619 PEDGTT--HILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMR 696 (708)
Q Consensus 619 p~~~~~--~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 696 (708)
|++..- -...++.-.+.|..+.|+.++.-..+-..+...+.-|- .+-.-...|+. ++.+++.-++++-+.
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~-------twk~FEvrHGn-edT~keMLRikRsvq 724 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD-------TWKEFEVRHGN-EDTYKEMLRIKRSVQ 724 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH-------HHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence 886543 34567888899999999999887655433332222221 01111234666 666666666665554
Q ss_pred hh
Q 038516 697 KL 698 (708)
Q Consensus 697 ~~ 698 (708)
..
T Consensus 725 a~ 726 (835)
T KOG2047|consen 725 AT 726 (835)
T ss_pred Hh
Confidence 44
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=1.3e-08 Score=103.70 Aligned_cols=477 Identities=13% Similarity=0.053 Sum_probs=253.8
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHhc---cccchHHH-------------------HH----HHHHHHHhCCCCc
Q 038516 96 AHLTFRLIDQMEFECLRPNGLTFTSLAQAVS---LLEDQLMG-------------------SL----LHAQVIKYGSSED 149 (708)
Q Consensus 96 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~g~~~~ 149 (708)
.+.++.-+.....++...+..++..+...+. ..++.+++ .. .+.++....+..|
T Consensus 243 ~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd 322 (799)
T KOG4162|consen 243 PKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND 322 (799)
T ss_pred chHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence 5566666666666666666666655544332 23333333 11 1122222234456
Q ss_pred hhHHhHHHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcch-HHHHHHH
Q 038516 150 TCVQTSLLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFS-YSMLLNA 225 (708)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~ 225 (708)
..+|..|.-+..++|+++.+.+.|++... .....|+.+-..+...|.-..|+.+++.-....-.|+..+ +...-+.
T Consensus 323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl 402 (799)
T KOG4162|consen 323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL 402 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence 66666666666666666666666665443 2334566666666666666666666665544322243333 2222222
Q ss_pred Hh-ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcC---------
Q 038516 226 CS-RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMEN--------- 295 (708)
Q Consensus 226 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~--------- 295 (708)
|. +.+..+++..+-.+++..... ..++ .....|..+.-+|...
T Consensus 403 c~e~l~~~eegldYA~kai~~~~~--------------~~~~-------------l~~~~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 403 CIERLKLVEEGLDYAQKAISLLGG--------------QRSH-------------LKPRGYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred HHhchhhhhhHHHHHHHHHHHhhh--------------hhhh-------------hhhhHHHHHHHHHHhHhhcCCChHH
Confidence 32 333444444444443331100 0000 1112222222222211
Q ss_pred --CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHH
Q 038516 296 --GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQ 373 (708)
Q Consensus 296 --g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 373 (708)
....++++.+++..+..+..|+...|..+- ++-.++++.|....++..+.+-..+...|..|.-.+...+++.+|+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 123456666777666544555555554443 3445667777777777777755667777777777777777777777
Q ss_pred HHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHC--CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 038516 374 KVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCRE--GLKCDNFALSGALSACADLAILKQGEMIHSQAEKT 448 (708)
Q Consensus 374 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (708)
.+.+...+. |......-+..-..-++.++++.....+..- ...+-..+
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~--------------------------- 586 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT--------------------------- 586 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh---------------------------
Confidence 776654432 1111111122222345556665555544321 00000000
Q ss_pred CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC-
Q 038516 449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR--PD- 519 (708)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~- 519 (708)
|+-....+....+. ...+.++..+..-....+....-... +...-+. |+
T Consensus 587 -------------------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~ 644 (799)
T KOG4162|consen 587 -------------------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDS 644 (799)
T ss_pred -------------------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCc
Confidence 00111111111110 00111111111111100000000000 1111111 12
Q ss_pred -----hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHH
Q 038516 520 -----EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWR 592 (708)
Q Consensus 520 -----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 592 (708)
...|......+.+.+..++|...+.+..+ +.| ....|...+..+...|+++||.+.|..+ ...|....+..
T Consensus 645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~ 722 (799)
T KOG4162|consen 645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT 722 (799)
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH
Confidence 12233344466777777777777666664 334 3556777778888999999999998887 44434678899
Q ss_pred HHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 593 TLLSTCVAKRNSRMVIQ--AAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 593 ~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
+++..+.+.|+...|+. ++..+++++|.++.+|..||.++.+.|+.++|.+.|....+..
T Consensus 723 Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 723 ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99999999998888888 9999999999999999999999999999999999999876643
No 60
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.31 E-value=5.7e-09 Score=95.75 Aligned_cols=229 Identities=14% Similarity=0.074 Sum_probs=138.8
Q ss_pred hCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC---CCCChHHHHHHHHHHHhcCChHHHHH
Q 038516 430 ADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV---LHPDLKCWNALLGGYSHYGMAEEAFM 506 (708)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 506 (708)
...|+...+......+.+.. +.+...+..-..+|...|++..|+.-++.. ...+..++--+-..+...|+.+.++.
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence 33445555555444444432 334455555556666666666665544433 23444455555555566666666666
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 038516 507 VFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI 586 (708)
Q Consensus 507 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 586 (708)
..++.++ +.||....... | +.+.+..+.++.| ....+.++|.++++-.++.....|
T Consensus 245 ~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep 300 (504)
T KOG0624|consen 245 EIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEP 300 (504)
T ss_pred HHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCC
Confidence 6666665 35554321110 1 1111122222222 223456677777776666522223
Q ss_pred C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeE
Q 038516 587 R-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSW 661 (708)
Q Consensus 587 ~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 661 (708)
. ...+..+-.+++..+++-+|++.+.++++.+|++..++...+.+|.-...|++|+.-++++.+.+.
T Consensus 301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~-------- 372 (504)
T KOG0624|consen 301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE-------- 372 (504)
T ss_pred cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--------
Confidence 3 233455555667789999999999999999999999999999999999999999999998876532
Q ss_pred EEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh-hhhccccc
Q 038516 662 IEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL-VTDEFGKE 706 (708)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~ 706 (708)
+|..+.+....-++++.+-++. +++|+||.
T Consensus 373 ---------------sn~~~reGle~Akrlkkqs~kRDYYKILGVk 403 (504)
T KOG0624|consen 373 ---------------SNTRAREGLERAKRLKKQSGKRDYYKILGVK 403 (504)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHhccchHHHHhhhc
Confidence 3566666666667766555554 89999874
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.30 E-value=4e-10 Score=97.88 Aligned_cols=163 Identities=17% Similarity=0.117 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSL 564 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~ 564 (708)
+...|.-+|.+.|++..|..-+++.++. .|+ ..++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|..+..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 4556778899999999999999999995 665 56788888899999999999999999987 5564 6788899999
Q ss_pred HHhcCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 038516 565 LSRAGLLDEAENLIAES---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV 641 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 641 (708)
+|..|++++|...|+++ |.-+....+|..++.+..+.|+.+.|+..++++++++|+++.....+++.+.+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999998 333335678888988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC
Q 038516 642 AKMRRKMKGSML 653 (708)
Q Consensus 642 ~~~~~~~~~~~~ 653 (708)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998877653
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.4e-08 Score=96.33 Aligned_cols=282 Identities=11% Similarity=-0.011 Sum_probs=203.8
Q ss_pred CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCE---eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHH
Q 038516 349 YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDI---VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGA 425 (708)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l 425 (708)
...+..+...-.+-+...+++.+..++++.+.+.|+ ..+-.-|.++...|+..+-..+=.+|.+. .+-...+|-++
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345555566666677777778888887777766543 33444456666777777666666666654 23345677777
Q ss_pred HHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH
Q 038516 426 LSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE 502 (708)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 502 (708)
..-|...|...+|++.+.......- .-...|-.+...|.-.|..|.|...+.... +.....+--+..-|.+.++..
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 7777777888888888877654431 123456677888888888898888876552 222222333455678889999
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCc----ChHHHHHHHHHHHhcCCHHHHH
Q 038516 503 EAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH--SLIP----GHKHYSCMVSLLSRAGLLDEAE 575 (708)
Q Consensus 503 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~ 575 (708)
.|.+.|.+... +-|+ ....+-+.-.....+.+.+|..+|+..... .+.+ ...+++.|+.+|.+.+++++|+
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999887 5664 555555555566788999999999988732 1111 3456888999999999999999
Q ss_pred HHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 576 NLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 576 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
..+++. ...+.+..++.+++..+...|+++.|...+.+++.+.|++..+-..|+.+...
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 999998 34445889999999999999999999999999999999998877777765544
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=2.8e-09 Score=97.16 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=169.8
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHC-CCCc--hhHHhHHHHHHHhcCCChh
Q 038516 295 NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTG-YDSS--VFVGTTLLNMYFKNGDAES 371 (708)
Q Consensus 295 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~ 371 (708)
+++.++|.++|-+|.+. -+-+..+-.++-+.+-+.|.++.|++++..+..+. ++.+ ..+...|..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45666777777766653 22333333445555666666666666666655432 1111 1233445666777777777
Q ss_pred HHHHHhhcCCCC---EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 038516 372 PQKVFMLIAEKD---IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT 448 (708)
Q Consensus 372 A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 448 (708)
|+.+|..+.+.+ ..+...|+..|....+|++|+++-+++.+.+-.+..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 777777776632 234555677777777777777777777665544333211
Q ss_pred CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHH
Q 038516 449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITF 523 (708)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~ 523 (708)
...|.-|...+.-..+++.|..++.+..+. .+..--.+.+.+...|+++.|++.|+...+. .|+ ..+.
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl 252 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVL 252 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHH
Confidence 112333444455566777777777776532 2333344567788888899999988888886 444 3456
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---
Q 038516 524 LSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA--- 600 (708)
Q Consensus 524 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~--- 600 (708)
..|..+|.+.|+.++...++.++.+.. +....-..+.+......-.++|...+.+-....|+...+..++.....
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence 777888889999999988888888752 333333444454444445566666555443334888877777766443
Q ss_pred cCCHHHHHHHHHHHH
Q 038516 601 KRNSRMVIQAAEQVL 615 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~ 615 (708)
.|...+....+.+++
T Consensus 331 eg~~k~sL~~lr~mv 345 (389)
T COG2956 331 EGRAKESLDLLRDMV 345 (389)
T ss_pred ccchhhhHHHHHHHH
Confidence 233344444444444
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.9e-07 Score=97.55 Aligned_cols=550 Identities=13% Similarity=0.133 Sum_probs=306.3
Q ss_pred cchhhHHHHHHhccCChHHHHHHhhcCCC--CCcc-----cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHH
Q 038516 48 PYMYNNVLSMYGRCGSIRDARQVFDEIPK--RSLV-----SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTS 120 (708)
Q Consensus 48 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 120 (708)
.+-+..+.+.|.++|-.+.|++.+..+.. +.++ .-..++ .|.-.-. ++.+++.++.|...+++.|..+...
T Consensus 606 HyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~ls-ve~s~eclkaml~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 606 HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLS-VEDSLECLKAMLSANIRQNLQIVVQ 683 (1666)
T ss_pred cccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcC-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34577888999999999999999988752 2222 122233 3444455 8999999999999988888877766
Q ss_pred HHHHhccccchHHHHHHHHHHHHh-----------CCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC-----------
Q 038516 121 LAQAVSLLEDQLMGSLLHAQVIKY-----------GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD----------- 178 (708)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------- 178 (708)
+..-|...-......++|+..... .+.-|+.+.-..|.+.++.|++.+..++-++-.-
T Consensus 684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLk 763 (1666)
T KOG0985|consen 684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK 763 (1666)
T ss_pred HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHH
Confidence 666665554455555566555442 2467778888899999999999999888654321
Q ss_pred ----CC---------ccc-HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc---------------chHH---------
Q 038516 179 ----KD---------AVA-WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ---------------FSYS--------- 220 (708)
Q Consensus 179 ----~~---------~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------~~~~--------- 220 (708)
+| ..- -+-|+- |.-.++..+-+++|-+- +.|+. ....
T Consensus 764 eAkL~DqlPLiiVCDRf~fVhdlvl-YLyrnn~~kyIE~yVQk----vNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq 838 (1666)
T KOG0985|consen 764 EAKLTDQLPLIIVCDRFDFVHDLVL-YLYRNNLQKYIEIYVQK----VNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQ 838 (1666)
T ss_pred hccccccCceEEEecccccHHHHHH-HHHHhhHHHHHHHHHhh----cCCcccchhhhhhhcCCCcHHHHHHHHHHHhcc
Confidence 11 110 011111 11112222222222211 11111 0011
Q ss_pred ----HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCC
Q 038516 221 ----MLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENG 296 (708)
Q Consensus 221 ----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 296 (708)
-|..-+-+.++++--...++..+..| ..|..++|+|...|..+.+-.+- .+ +.+..--+..+.-||...
T Consensus 839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fL----keN~yYDs~vVGkYCEKR 911 (1666)
T KOG0985|consen 839 FPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FL----KENPYYDSKVVGKYCEKR 911 (1666)
T ss_pred CChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hc----ccCCcchhhHHhhhhccc
Confidence 11111222233333333333334444 23555555555555544432221 11 011111112233344444
Q ss_pred CchHHHHHHHHHHHc---CCCCCCHhHHHHHHHHHcCCCCccchHHHHHH-----------HHHHCCC--CchhHHhHHH
Q 038516 297 NGEKAVDMFVALRRM---SLLKPDEYTFAAIISATSALPASAYGKPLHAL-----------VIKTGYD--SSVFVGTTLL 360 (708)
Q Consensus 297 ~~~~A~~~~~~m~~~---~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-----------~~~~~~~--~~~~~~~~li 360 (708)
++.-|.--|++=.-. -++--....|....+.+....+.+.-.+++.+ .+..+++ .|+.-....+
T Consensus 912 DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tV 991 (1666)
T KOG0985|consen 912 DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTV 991 (1666)
T ss_pred CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHH
Confidence 443332222110000 01112222333444444444444433333311 1111211 1233333444
Q ss_pred HHHHhcCCChhHHHHHhhcCC-CCEe-----eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516 361 NMYFKNGDAESPQKVFMLIAE-KDIV-----LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI 434 (708)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 434 (708)
.++...+-+.+-.++++.+.- +++. .-|.|+..-.+ -+..+..+..+++-.-. .|+ +...+...+-
T Consensus 992 kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~L 1063 (1666)
T KOG0985|consen 992 KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQL 1063 (1666)
T ss_pred HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhH
Confidence 455555555555555554432 1111 12222222222 23334444444432211 111 1222344556
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038516 435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH 514 (708)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 514 (708)
+++|..+|+.. ..+....+.|+. ..+.++.|.++-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1064 yEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1064 YEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 67777776643 233333344443 456677777776666544 57999999999999999998876543
Q ss_pred CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHH
Q 038516 515 GLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTL 594 (708)
Q Consensus 515 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 594 (708)
-|...|.-++..+.+.|.+++..+++....+....|...+ .|+.+|.+.+++.|-++++. +|+..-....
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-----GPNVANIQQV 1200 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-----CCCchhHHHH
Confidence 3667899999999999999999999998888777776654 58899999999999988873 3777778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
+.-|...|.++.|.-+|.. .+-|..|+..+...|.|..|.+.-+++.+
T Consensus 1201 Gdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred hHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 8899999999999888763 45588888899999999988877766544
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=6.2e-08 Score=95.81 Aligned_cols=181 Identities=13% Similarity=0.164 Sum_probs=118.9
Q ss_pred HHHHhhHhcCCHHHHHHHHhhCCCCC-hHHHHHHHHHH-H-hcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhcc
Q 038516 459 SLVDMYAKNGDLRAAESIFSQVLHPD-LKCWNALLGGY-S-HYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHS 533 (708)
Q Consensus 459 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~-~-~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~ 533 (708)
.++.+|. +..+.+.++....+... ...+..++... . +...+..+.+++...-+. .|.. ......+......
T Consensus 314 ~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 314 ALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhc
Confidence 3444443 45567777777665322 33344444333 2 223577888888888775 4543 4455556678889
Q ss_pred CcHHHHHHHHH--------HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCCHHHHHHHHHH
Q 038516 534 GLVERGKILWN--------QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIRIELWRTLLST 597 (708)
Q Consensus 534 ~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~l~~~ 597 (708)
|+++.|.+++. .+.+.+..| .+...++..+.+.++-+-|..+++++ +..+.-...|..+...
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 99999999999 555444444 45566788888888877676666554 2221112234444444
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
-.++|+.++|...++++++.+|++..+...++.+|... +.+.|..+-+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 55689999999999999999999999999999888775 3455555443
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.4e-08 Score=93.59 Aligned_cols=366 Identities=13% Similarity=0.086 Sum_probs=162.8
Q ss_pred HHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHH-HHHHHhccCC
Q 038516 156 LLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSM-LLNACSRMGN 231 (708)
Q Consensus 156 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~ 231 (708)
+..++.+.|++++|...+..+.+ ++...+--|..+..-.|.+.+|..+-... |+...... ++...-+.++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence 34455566777777666654433 33444444555555556666666554442 22222222 2333334555
Q ss_pred hhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHH-HHHHHHcCCCchHHHHHHHHH
Q 038516 232 FVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNS-MIAGYMENGNGEKAVDMFVAL 308 (708)
Q Consensus 232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m 308 (708)
-++-..+.+.+... ..-..+|..+.-..-.+++|+.++.++.. |.-...|. +.-+|.+..-++-+.+++..-
T Consensus 137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 54444444433221 12223333333333456777777777765 33334443 445677777777777777777
Q ss_pred HHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhc-----CCChhHHHHHhhcCCCC
Q 038516 309 RRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKN-----GDAESPQKVFMLIAEKD 383 (708)
Q Consensus 309 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~ 383 (708)
.+. ++.+....+......-+.=+-..+..-...+.+.+-.. -..+.-.++. ..-+.|++++-.+.+.-
T Consensus 212 L~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I 284 (557)
T KOG3785|consen 212 LRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI 284 (557)
T ss_pred HHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence 664 33333333433333223222222333333333222111 0112222221 22344555544333322
Q ss_pred EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHhCCCCch-hHH
Q 038516 384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSAC-----ADLAILKQGEMIHSQAEKTGHGVEM-SVC 457 (708)
Q Consensus 384 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 457 (708)
+.+.-.|+--|.+.++..+|..+.+++.- ..|-......+..+- .....++-|.+.|+..-.++..-|. .--
T Consensus 285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR 362 (557)
T KOG3785|consen 285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR 362 (557)
T ss_pred hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence 22333345557788888888888776531 233333322222221 1222344555555555444432221 111
Q ss_pred HHHHHhhHhcCCHHHHHHHHhhCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhc
Q 038516 458 GSLVDMYAKNGDLRAAESIFSQVL----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL-SACSH 532 (708)
Q Consensus 458 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~ 532 (708)
.++...+.-..++++.+-.++.+. ..|...+| +..+++..|++.+|.++|-+.....++ |..+|.+++ ++|.+
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 233333333344444444444432 12222222 344455555555555555444332222 333333322 24445
Q ss_pred cCcHHHHHHHH
Q 038516 533 SGLVERGKILW 543 (708)
Q Consensus 533 ~~~~~~a~~~~ 543 (708)
.+..+.|+.++
T Consensus 441 nkkP~lAW~~~ 451 (557)
T KOG3785|consen 441 NKKPQLAWDMM 451 (557)
T ss_pred cCCchHHHHHH
Confidence 55555554443
No 67
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=1.3e-09 Score=110.43 Aligned_cols=230 Identities=21% Similarity=0.191 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHhhHhcCCHHHHHHHHhhCCC----------
Q 038516 420 FALSGALSACADLAILKQGEMIHSQAEKT-----GH-GVEM-SVCGSLVDMYAKNGDLRAAESIFSQVLH---------- 482 (708)
Q Consensus 420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 482 (708)
.|+..+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555677777777777777777765543 21 1222 2334577888899999999999988731
Q ss_pred C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHC---CC
Q 038516 483 P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEH-----GL-RPDEIT-FLSLLSACSHSGLVERGKILWNQMKEH---SL 551 (708)
Q Consensus 483 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~ 551 (708)
| -..+++.|..+|.+.|++++|..++++..+- |. .|...+ ++.+...|...+++++|..+++...+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 2346788888999999999998888877641 21 223222 666777899999999999999987654 12
Q ss_pred CcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038516 552 IPG----HKHYSCMVSLLSRAGLLDEAENLIAES-------PY--SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL- 617 (708)
Q Consensus 552 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 617 (708)
.++ ..+++.|...|...|++++|+++++++ .. .......++.+...|.+.++...|.++|.++..+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 467999999999999999999999887 11 1112456778888899999999999999988753
Q ss_pred ---CCCC---cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 618 ---DPED---GTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 618 ---~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
.|++ ..+|..|+.+|..+|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444 4568899999999999999999988765
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.26 E-value=1.7e-09 Score=105.34 Aligned_cols=213 Identities=16% Similarity=0.039 Sum_probs=151.5
Q ss_pred ccHHHHHHHHHHHHHh-CCCCc--hhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHH
Q 038516 433 AILKQGEMIHSQAEKT-GHGVE--MSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFM 506 (708)
Q Consensus 433 ~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 506 (708)
+..+.+..-+..+... ...|+ ...+..+...|.+.|+.++|...|++.. +.+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555555542 22222 4567777888999999999999998875 3467899999999999999999999
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038516 507 VFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYS 584 (708)
Q Consensus 507 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 584 (708)
.|++..+ +.|+ ...+..+..++...|++++|.+.|+...+ ..|+..........+...+++++|...+.+. ...
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999998 4675 56677777888999999999999999987 4454332222233455678899999999665 222
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 585 EIRIELWRTLLSTCVAKRNSRMVIQAAEQV-------LRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 585 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+++ .|.. .......|+...+ ..++.+ .++.|+.+.+|..||.+|...|++++|+..|++..+.++
T Consensus 196 ~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred Ccc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 122 2321 1222234544333 233333 356677778999999999999999999999999886543
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3.8e-10 Score=102.60 Aligned_cols=227 Identities=13% Similarity=0.048 Sum_probs=169.7
Q ss_pred hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516 388 TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN 467 (708)
Q Consensus 388 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (708)
+.+..+|.+.|.+.+|.+.|+.-+.. .|-+.+|-.|...|.+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-------------------------------------~~~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-------------------------------------FPHPDTFLLLSKVYQRI 269 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-------------------------------------CCchhHHHHHHHHHHHh
Confidence 34566667777777777666665544 23334444555666677
Q ss_pred CCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516 468 GDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 468 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
.+.+.|+.+|.+-+ .| |+.....+.+.+-..++.++|.++++...+.. ..|.....++...|.-.++.+-|+.+|+
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYR 348 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYR 348 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHH
Confidence 77777777776664 24 33334446667777788888888888888752 3355566666677778888888888888
Q ss_pred HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 545 QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
++.+.|+. ++..|..+.-++.-.++++-++.-|+++ .....-.++|-.+.......||+..|.+.++-++.-+|+
T Consensus 349 RiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 349 RILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 88887764 5667777888888888888888888776 212234678999988888899999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+...++.|+.+-.+.|+.++|+.++....+..+
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 999999999999999999999999998877543
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=4e-09 Score=112.59 Aligned_cols=242 Identities=14% Similarity=0.076 Sum_probs=172.8
Q ss_pred ChHHHHHHHHHHhHCCCccCHH-HHHHHHHHHh---------CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC
Q 038516 399 DGECAIKLFCKMCREGLKCDNF-ALSGALSACA---------DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG 468 (708)
Q Consensus 399 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 468 (708)
.+++|...|++..+. .|+.. .+..+..++. ..+++++|...++...+.. +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 356777888777654 44443 2332222221 3345788888888887765 446777888888899999
Q ss_pred CHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHH
Q 038516 469 DLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 469 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
++++|...|++.. .| +...|..+...+...|++++|+..++++.+. .|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999875 34 5677888999999999999999999999995 66543 33344445666899999999999
Q ss_pred HhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC
Q 038516 545 QMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRL---DP 619 (708)
Q Consensus 545 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p 619 (708)
++.+.. .| +...+..++.+|...|++++|...+.++....|+ ...+..+...+...| +.|...++++++. .|
T Consensus 431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 987642 34 3555777888999999999999999988433344 444555555666666 4777777776654 34
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 620 EDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
.++. .+..+|.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 367778888888888777 7776543
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.4e-07 Score=89.13 Aligned_cols=405 Identities=12% Similarity=0.041 Sum_probs=251.8
Q ss_pred hhhHHHHHHhcccCCChHHHHHHHhccCCC-ChhHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCCCHhHHHHHHHHH
Q 038516 251 LPLENALLDMYSKCSDTQTAFSVFTRIENP-DLVSWNSMIAGYMENG-NGEKAVDMFVALRRMSLLKPDEYTFAAIISAT 328 (708)
Q Consensus 251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~ 328 (708)
.......+.+|...++-+.|..++.+.+.. ....-|.|+.-+.+.| +..++.--+...... .+.-......++.--
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre--cp~aL~~i~~ll~l~ 174 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE--CPMALQVIEALLELG 174 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh--cchHHHHHHHHHHHh
Confidence 334445566666677888888888777762 2223333333333332 222222222222221 111111111111100
Q ss_pred cCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHh--cCCChhHHHHHhhcC-----CCCEeeehhhHHHHhcCCChH
Q 038516 329 SALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFK--NGDAESPQKVFMLIA-----EKDIVLWTEMIIGHSRMGDGE 401 (708)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~ 401 (708)
+..+...-..|-....+|+......-+.+++. .++-..|...+-.+. ..|+.....+...+...|+.+
T Consensus 175 -----v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~ 249 (564)
T KOG1174|consen 175 -----VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF 249 (564)
T ss_pred -----hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence 01111111122233344544444444444443 334334444333322 236777888899999999999
Q ss_pred HHHHHHHHHhHCCCccCHHH----HHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHH
Q 038516 402 CAIKLFCKMCREGLKCDNFA----LSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIF 477 (708)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 477 (708)
+|...|++..-. .|+..+ |..++ ...|+.+....+...+.... +.+...|-.-........+++.|..+-
T Consensus 250 ~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~ 323 (564)
T KOG1174|consen 250 QAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV 323 (564)
T ss_pred HHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 999999987643 454433 33333 45667777766665554322 011111111122233567888999888
Q ss_pred hhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc
Q 038516 478 SQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP 553 (708)
Q Consensus 478 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 553 (708)
++.++. ++..|-.-...+.+.|++++|.=.|+..+. +.| +...|..|+.+|...|++.+|.-+-...... +.-
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 887643 444554445678899999999999999988 466 6788999999999999999998877766652 223
Q ss_pred ChHHHHHHH-HHHH-hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 554 GHKHYSCMV-SLLS-RAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 554 ~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
+..+...++ ..+. .-..-++|.+++++.....|+ ......+...|...|..+.++.++++.+...|+. ..+..||+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd 479 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGD 479 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHH
Confidence 444444442 2222 223458899999998444354 4567777788999999999999999999999975 56999999
Q ss_pred HHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh
Q 038516 631 LYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL 698 (708)
Q Consensus 631 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 698 (708)
++...+.+.+|.+.|..+.+. .|+.+...+-+.+|.++++++
T Consensus 480 ~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 480 IMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred HHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHhccCCC
Confidence 999999999999999988764 688888888888888888765
No 72
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=5.3e-11 Score=80.38 Aligned_cols=50 Identities=32% Similarity=0.654 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 038516 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH 532 (708)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 532 (708)
||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998875
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=3.3e-11 Score=81.41 Aligned_cols=50 Identities=22% Similarity=0.482 Sum_probs=45.1
Q ss_pred CCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhcc
Q 038516 77 RSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSL 127 (708)
Q Consensus 77 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 127 (708)
||+++||++|.+|++.|+ +++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~-~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGK-FEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 688899999999999999 99999999999999999999999999998874
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=5.8e-09 Score=99.09 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=141.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516 484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV 562 (708)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 562 (708)
....+..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 3567788889999999999999999999885 454 5667778889999999999999999998742 23456778889
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516 563 SLLSRAGLLDEAENLIAESPYS---EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD 639 (708)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 639 (708)
..+...|++++|.+.++++... +.....+..+...+...|++++|...++++++.+|+++..+..++.++...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999997322 2345677778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 038516 640 CVAKMRRKMKGS 651 (708)
Q Consensus 640 eA~~~~~~~~~~ 651 (708)
+|...+++..+.
T Consensus 187 ~A~~~~~~~~~~ 198 (234)
T TIGR02521 187 DARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 75
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=4.8e-09 Score=112.01 Aligned_cols=212 Identities=13% Similarity=-0.023 Sum_probs=164.2
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhH---------hcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCC
Q 038516 433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYA---------KNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGM 500 (708)
Q Consensus 433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 500 (708)
+.+++|...++...+.. +.+...+..+..++. ..+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888888887654 223445555554443 2345899999999885 3467788888899999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 038516 501 AEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLI 578 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 578 (708)
+++|...|+++.+. .|+ ...+..+...+...|++++|...++++.+ +.|+. ..+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999995 665 55677788899999999999999999998 44543 23334455677789999999999
Q ss_pred HhCCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 579 AESPYS-EI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 579 ~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+++... +| ++..+..+..++...|+.++|...++++....|++......++..|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 887322 23 45667778888889999999999999999999998888889999998888 4888877776553
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.17 E-value=4.9e-06 Score=83.70 Aligned_cols=410 Identities=13% Similarity=0.058 Sum_probs=187.5
Q ss_pred HhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHhccCChhHHH
Q 038516 161 SNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ-FSYSMLLNACSRMGNFVCGK 236 (708)
Q Consensus 161 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~ 236 (708)
...|+.++|......-.+ .+.+.|..+.-.+-...++++|++.|+..... .||. ..+.-+.-.-++.++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 334555555544443322 23445555555555555566666666655542 3322 22333333334444554444
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC-----CChhHHHH------HHHHHHcCCCchHHHHHH
Q 038516 237 VIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN-----PDLVSWNS------MIAGYMENGNGEKAVDMF 305 (708)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~ 305 (708)
.......+.. +.....|..++.++.-.|+...|..+++...+ ++...+.- -.....+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4444443321 12233444555555555555555555544332 22222221 112334455555555555
Q ss_pred HHHHHcCCCCCCHhHH-HHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHH-HHHhhcCCCC
Q 038516 306 VALRRMSLLKPDEYTF-AAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQ-KVFMLIAEKD 383 (708)
Q Consensus 306 ~~m~~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~ 383 (708)
..-... ..|...+ ..-...+.+.+++++|..++..++..+ |.+...|-.+..++++-.+.-++. .+|....+.-
T Consensus 209 ~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 209 LDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 444322 1222222 222334455566666666666655553 333334444444444222222222 4444433210
Q ss_pred ---EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHH----HHHHHhC-------
Q 038516 384 ---IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIH----SQAEKTG------- 449 (708)
Q Consensus 384 ---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~----~~~~~~~------- 449 (708)
...-..=+.......-.+..-+++..+.+.|+++-...+.++..- ....+-..++. ..+...|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 000000011111112233444566667777776544444333321 11111111111 1111111
Q ss_pred ---CCCchhHHH--HHHHhhHhcCCHHHHHHHHhhCCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 038516 450 ---HGVEMSVCG--SLVDMYAKNGDLRAAESIFSQVLH--PDL-KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI 521 (708)
Q Consensus 450 ---~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 521 (708)
-+|+...|. .++..|-+.|+++.|...++.... |+. ..|..=.+.+...|++++|..++++..+.. .||..
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~ 440 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA 440 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence 133333333 356666777888888887777763 322 234444466777778888888888777753 34443
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHCCCC--cChH----HHHHH--HHHHHhcCCHHHHHHHHHhC
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEHSLI--PGHK----HYSCM--VSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~----~~~~l--~~~~~~~g~~~~A~~~~~~~ 581 (708)
.=.--..-..++++.++|.++.....+.|.. -+.. +|-.+ +.+|.|.|++.+|++=+...
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 3223344455667777777777777665431 1111 11111 35677777777776665544
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=4.9e-07 Score=92.52 Aligned_cols=445 Identities=14% Similarity=0.067 Sum_probs=244.1
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC----
Q 038516 103 IDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD---- 178 (708)
Q Consensus 103 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---- 178 (708)
+.++....++.|+..|..+--++...|+++.+.+.|++....-+ -....|..+-..|..+|.-..|..+++.-..
T Consensus 311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 44444555677888999999999999999999999998876543 3456788888999999999999999876543
Q ss_pred CCccc-HHHHHHHHh-cCCChhHHHHHHHHHHhC--CC--CCCcchHHHHHHHHhccC----C-------hhHHHHHHHH
Q 038516 179 KDAVA-WNSIILGNF-KNDKMKEGLSLFGAMVGS--GV--NPTQFSYSMLLNACSRMG----N-------FVCGKVIHAR 241 (708)
Q Consensus 179 ~~~~~-~~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~~----~-------~~~a~~~~~~ 241 (708)
|+..+ +-..-..|. +.+..++++++-.+.... +. ......|..+--+|...- . ..++.+.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 32222 222223333 457788888887777652 11 112233333333333211 1 1223333333
Q ss_pred HHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHH
Q 038516 242 VIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTF 321 (708)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 321 (708)
.++.+. .| |++.. .+.--|+..++.+.|++..++..+- +-.-+...|
T Consensus 470 av~~d~-~d-----------------------------p~~if--~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~w 516 (799)
T KOG4162|consen 470 AVQFDP-TD-----------------------------PLVIF--YLALQYAEQRQLTSALDYAREALAL-NRGDSAKAW 516 (799)
T ss_pred HHhcCC-CC-----------------------------chHHH--HHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHH
Confidence 333321 11 11111 1222233444555555555554444 233344444
Q ss_pred HHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChH
Q 038516 322 AAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGE 401 (708)
Q Consensus 322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 401 (708)
..+.-.+...+++.+|..+.+.....- +.|......-++.-...++.+++......+.. .|... ......++-.
T Consensus 517 hLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g 590 (799)
T KOG4162|consen 517 HLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEG 590 (799)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhh
Confidence 444444444555555555544433221 11111111112222234555555444332221 00000 0000111111
Q ss_pred HHHHHHHHHhHCCCcc--CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhh
Q 038516 402 CAIKLFCKMCREGLKC--DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQ 479 (708)
Q Consensus 402 ~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 479 (708)
...+....+.-.--.| ...++..+.. ++..-.+.-..+.....+..
T Consensus 591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~--------------------------------l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 591 KLLRLKAGLHLALSQPTDAISTSRYLSS--------------------------------LVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hhhhhhcccccCcccccccchhhHHHHH--------------------------------HHHhhhhhcccccccCcccc
Confidence 1222221111100011 0111111111 11100011111111111111
Q ss_pred CCCCC------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516 480 VLHPD------LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLI 552 (708)
Q Consensus 480 ~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 552 (708)
...|+ ...|......+...++.++|...+.+.... .| ....|......+...|..++|.+.|..... +.
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ld 714 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LD 714 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cC
Confidence 12222 234666677888889999999888888774 44 455566666678889999999999998876 66
Q ss_pred cC-hHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 553 PG-HKHYSCMVSLLSRAGLLDEAEN--LIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 553 p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
|+ +....+++.++.+.|+..-|.. ++..+ ...+.+...|..++..+.+.|+.+.|...|+-++++++.+|.
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 75 6778899999999997776666 88777 555467999999999999999999999999999999988774
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.1e-05 Score=84.86 Aligned_cols=473 Identities=12% Similarity=0.062 Sum_probs=257.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH---HhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC----CCcccHHH
Q 038516 12 IATLIQICASITSLKRARQIHALVL---TTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK----RSLVSYNA 84 (708)
Q Consensus 12 ~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ 84 (708)
...+.+.|.++|...+|.+.+.++. +.-.. .+...-.-++..++ .-.++++.+.+..|.. .|..+.-.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVh----th~L~pEwLv~yFg-~lsve~s~eclkaml~~NirqNlQi~VQ 683 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVH----THLLNPEWLVNYFG-SLSVEDSLECLKAMLSANIRQNLQIVVQ 683 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHH----hccCCHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4567788999999999987766543 22211 11112223444444 4477888888888763 34444445
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHc-----------CCCCCcchHHHHHHHhccccchHHHHHHHHH------------H
Q 038516 85 LIAAYSRDHDHAHLTFRLIDQMEFE-----------CLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQ------------V 141 (708)
Q Consensus 85 ll~~~~~~~~~~~~a~~~~~~m~~~-----------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------------~ 141 (708)
+..-|+.+-. .+.-+++|+..... ++..|+...-.-|++.++.|.+.+.+++-++ +
T Consensus 684 vatky~eqlg-~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 684 VATKYHEQLG-AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHhC-HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 5555666666 67777888777542 2456666666778888888888777665432 1
Q ss_pred HHhCC---CC-----chhHHhHHHHHhHhCCChhHHHHHhccCCCC----------------------------CcccHH
Q 038516 142 IKYGS---SE-----DTCVQTSLLGMYSNCGDFESAKRIFGLIGDK----------------------------DAVAWN 185 (708)
Q Consensus 142 ~~~g~---~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~ 185 (708)
.+..+ -| |..-+-.=+-.|.-.++..+-+++|-+-..| ....-+
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~d 842 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVD 842 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChH
Confidence 11111 01 1111111111222223333333333221111 112223
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHH----HHHHHH------HHhCC--------
Q 038516 186 SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGK----VIHARV------IISNT-------- 247 (708)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~----~~~~~~------~~~~~-------- 247 (708)
-|..-.-+.++.+--+..++.....|.. +..+++.+.+.|..+++-.+-. ..++.. .++.+
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 3333444556666677778888888754 8899999999887655432210 011110 01000
Q ss_pred -----------CCChhhHHHHHHhcccCCChHHHHHHHhc-----------cC-----C-CChhHHHHHHHHHHcCCCch
Q 038516 248 -----------QVDLPLENALLDMYSKCSDTQTAFSVFTR-----------IE-----N-PDLVSWNSMIAGYMENGNGE 299 (708)
Q Consensus 248 -----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----------~~-----~-~~~~~~~~li~~~~~~g~~~ 299 (708)
--.-..|..+.+-+.+..+.+.-.+++.+ .. + .|+..-..-+.++...+-+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence 00011222233333344444433333321 11 1 45566667788888888899
Q ss_pred HHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHC-----------------------CCCchhHH
Q 038516 300 KAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTG-----------------------YDSSVFVG 356 (708)
Q Consensus 300 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~ 356 (708)
+-+++++++.-....-.....+-.++-.-+-.-+...+..+.+.+-..+ +..+....
T Consensus 1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence 9999998886441211111222222211111111111212211111111 12222222
Q ss_pred hHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHH
Q 038516 357 TTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILK 436 (708)
Q Consensus 357 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 436 (708)
+.|+. .-+.++.|.++-+++.+ +..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence 22222 12334444444444433 357899999999999999998877442 36678999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 038516 437 QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV 507 (708)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (708)
+-..++.+..+...+|...+ .|+-+|++.+++.+.++++. .||......+..-|...|.++.|.-+
T Consensus 1151 dLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 99999999988877776554 78999999999988887763 34444444444455555555444433
No 79
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=4.3e-06 Score=84.88 Aligned_cols=437 Identities=12% Similarity=0.104 Sum_probs=252.7
Q ss_pred HHHHhHhCCChhHHHHHhccCCCCCcc-cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhH
Q 038516 156 LLGMYSNCGDFESAKRIFGLIGDKDAV-AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVC 234 (708)
Q Consensus 156 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 234 (708)
.|.+|.....|++|+.+-+....|... .-.+.+.++...|+-+.|-++- .+.-.-...|..|.+.|.+-.
T Consensus 563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~ 633 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAK 633 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchH
Confidence 455666666677777666554444221 1223344455555555554431 111111234555556665544
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 038516 235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL 314 (708)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 314 (708)
|...... ...+..|......+..++.+..-+++|-.+|+++..++. .+.+|-+-.-+-+|+++-+-. .
T Consensus 634 a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa-----f 701 (1636)
T KOG3616|consen 634 AARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA-----F 701 (1636)
T ss_pred HHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh-----C
Confidence 4332110 111223444444445555555556666666666654332 222232222334444333211 1
Q ss_pred CCCHhHHH-HHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEe--eehhhH
Q 038516 315 KPDEYTFA-AIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIV--LWTEMI 391 (708)
Q Consensus 315 ~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li 391 (708)
+....++. ..-..+...|+++.|..-|-+... ....+.+.....+|.+|..+++.+..+++. -|..+.
T Consensus 702 p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~ia 772 (1636)
T KOG3616|consen 702 PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIA 772 (1636)
T ss_pred cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHH
Confidence 11111111 111222333444444433332211 122344556677888888888888776543 467778
Q ss_pred HHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHH
Q 038516 392 IGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLR 471 (708)
Q Consensus 392 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 471 (708)
..|...|+++.|.++|.+.- .+.-.+..|.+.|.|+.|.++-.... |.......|-+-..-+-+.|++.
T Consensus 773 dhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchh
Confidence 88999999999999886531 24456777889999988877755442 33445556666667777899999
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516 472 AAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITFLSLLSACSHSGLVERGKILWNQMKEH 549 (708)
Q Consensus 472 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 549 (708)
+|.++|-.+..|+.. |..|-+.|..+..+++.++- .|+ ..|...+..-+...|+...|..-|-+..+
T Consensus 842 eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d- 910 (1636)
T KOG3616|consen 842 EAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD- 910 (1636)
T ss_pred hhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-
Confidence 999999888888753 67889999999988887764 344 34566677788889999999988776654
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC---HHHHHHH------HHHHHhcCCHHHHHHHH------HHH
Q 038516 550 SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR---IELWRTL------LSTCVAKRNSRMVIQAA------EQV 614 (708)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l------~~~~~~~~~~~~a~~~~------~~~ 614 (708)
|.+-++.|...+.|++|.++-+.-...+.. ...|..- ...+.++|-++.|.... +-+
T Consensus 911 --------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~a 982 (1636)
T KOG3616|consen 911 --------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFA 982 (1636)
T ss_pred --------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhH
Confidence 667778898999999998887654322111 1122211 12233455555444331 112
Q ss_pred Hh-----cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 615 LR-----LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 615 ~~-----~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
++ .....+..+..++..+...|++++|.+-+-+..+.+
T Consensus 983 fdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 983 FDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 21 223445678888888999999999987776665543
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.10 E-value=5.6e-08 Score=94.78 Aligned_cols=230 Identities=14% Similarity=-0.030 Sum_probs=159.0
Q ss_pred cCCChHHHHHHHHHHhHCC-CccCH--HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516 396 RMGDGECAIKLFCKMCREG-LKCDN--FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA 472 (708)
Q Consensus 396 ~~~~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 472 (708)
..+..+.++.-+.+++... ..|+. ..|...-..+...|+.+.|...+....+.. +.+...++.+...+...|++++
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3456677777777777532 22322 345556666778899999988888887764 4567889999999999999999
Q ss_pred HHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516 473 AESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH 549 (708)
Q Consensus 473 A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 549 (708)
|...|+... .| +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|++....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999885 34 5678888999999999999999999999984 665543222233345678899999999776542
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHH--HHHHHHhCCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC
Q 038516 550 SLIPGHKHYSCMVSLLSRAGLLDE--AENLIAESPYS-----EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP-ED 621 (708)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~ 621 (708)
..|+...+ .++. ...|+..+ +.+.+.+.... +.....|..++..+...|+.++|+..|+++++.+| +.
T Consensus 195 -~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 195 -LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred -CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 23332222 2333 33555443 33333322111 11346788999999999999999999999999997 44
Q ss_pred cchHHHHHHHH
Q 038516 622 GTTHILLSNLY 632 (708)
Q Consensus 622 ~~~~~~l~~~~ 632 (708)
......+..+.
T Consensus 271 ~e~~~~~~e~~ 281 (296)
T PRK11189 271 VEHRYALLELA 281 (296)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=1.9e-06 Score=86.63 Aligned_cols=122 Identities=14% Similarity=0.073 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYS-EIRIELWRTLLSTCVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 600 (708)
+..+...+-+.|+++.|..+++..+. ..|+ ++.|-.-++.+...|.+++|..+++++..- .+|..+=..-+....+
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 33445556666677777666666664 4555 344545556666666777777766666322 1222222233333344
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcc-------hHHHH--HHHHHhcCCchHHHHHHH
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGT-------THILL--SNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l--~~~~~~~g~~~eA~~~~~ 646 (708)
.++.++|..++.+.-+-.-+-.. .|..+ |.+|.++|++.+|.+-|.
T Consensus 452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 56666666665554433221000 12222 456666777766665443
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=1.4e-09 Score=98.96 Aligned_cols=235 Identities=11% Similarity=0.040 Sum_probs=187.0
Q ss_pred hHHHHHHHhcCCChhHHHHHhhcCC--CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516 357 TTLLNMYFKNGDAESPQKVFMLIAE--KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI 434 (708)
Q Consensus 357 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 434 (708)
+.+.++|.+.|.+.+|++.|+...+ +-+.+|-.|-.+|.+..+++.|+.++.+-.+. .|..+||..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~---------- 294 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL---------- 294 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----------
Confidence 5678899999999999999987654 46778888899999999999999999877654 666666531
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038516 435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVI 511 (708)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 511 (708)
-..+.+...++.++|.++|+...+ .++....++...|.-.++++-|+.+++++
T Consensus 295 ------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 ------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 233344455667777777776643 35556666777888899999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCH
Q 038516 512 LEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRI 588 (708)
Q Consensus 512 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 588 (708)
++.|+. +...|+.+.-+|.-.++++-++.-|++....--.|+ ..+|..+.......|++.-|.+.|+-+.. .+...
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 999865 777888888899999999999999999887644444 56788899999999999999999988743 33457
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
+.++.|.-.-.+.|++++|..++..+..+.|+-......|
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence 8899998888899999999999999999999866554443
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.2e-06 Score=79.44 Aligned_cols=442 Identities=11% Similarity=0.096 Sum_probs=222.9
Q ss_pred hHhCCChhHHHHHhccCCC---CCcccHH-HHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHH
Q 038516 160 YSNCGDFESAKRIFGLIGD---KDAVAWN-SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCG 235 (708)
Q Consensus 160 ~~~~g~~~~A~~~~~~~~~---~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 235 (708)
+....|+..|+.+++--.. ......+ -+..++...|++++|+..|.-+.+.. .|+......|..+..-.|...+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 3445677777777654322 1111222 24467788999999999999887743 55666666666666677888888
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 038516 236 KVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLK 315 (708)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 315 (708)
+.+.... +.++-.-..|.....+.++-.+-...-+.+... ..---+|.......-.+.+|+++|..+... .
T Consensus 111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n 181 (557)
T KOG3785|consen 111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD---N 181 (557)
T ss_pred HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 7776542 223333444555566677766666555555432 222233444444445688999999998865 5
Q ss_pred CCHhHHHHHHHHH-cCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHH
Q 038516 316 PDEYTFAAIISAT-SALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGH 394 (708)
Q Consensus 316 p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 394 (708)
|+-...+.-+..| .+..-++.+.+++.-.... ++.++...|.......+.=.-..|+.-.+++...-...|. .+.-+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l 259 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYL 259 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHH
Confidence 6666666655544 4555556666666655543 3444555555544444432222222222222221111111 11112
Q ss_pred hcC-----CChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhh-----
Q 038516 395 SRM-----GDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMY----- 464 (708)
Q Consensus 395 ~~~-----~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----- 464 (708)
+++ .+-+.|++++-.+.+. -|.. -..++-.+.+.+++++|..+.+.+.. ..|-..+...++.+-
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhc
Confidence 221 2335566665444321 2221 11233345566666666655544321 112222222222111
Q ss_pred HhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH
Q 038516 465 AKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERG 539 (708)
Q Consensus 465 ~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 539 (708)
.....+.-|.+.|+-.- ..++..-.++...+.-..++++.+.++.....--...|...| .+..+.+..|.+.+|
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~ea 412 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEA 412 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHH
Confidence 11112334444444331 123333444555555555666666666665554222222222 344566666666666
Q ss_pred HHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 540 KILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
.++|-.+....++-+..-...|+++|.+.|+.+-|.+++-++......-..+..+..-|.+.+.+--|-+++..+-.++|
T Consensus 413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 66666554323332233333455666666666666666655532211223334444556666666666666666555655
Q ss_pred C
Q 038516 620 E 620 (708)
Q Consensus 620 ~ 620 (708)
.
T Consensus 493 ~ 493 (557)
T KOG3785|consen 493 T 493 (557)
T ss_pred C
Confidence 4
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.4e-07 Score=95.74 Aligned_cols=160 Identities=20% Similarity=0.203 Sum_probs=106.3
Q ss_pred HHHHHHhhHhcCCHHHHHHHHhhCC----------CCChH-HHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCh--
Q 038516 457 CGSLVDMYAKNGDLRAAESIFSQVL----------HPDLK-CWNALLGGYSHYGMAEEAFMVFEVILEH---GLRPDE-- 520 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-- 520 (708)
++.|..+|.+.|++++|...++... .|.+. .++.++..+...+++++|..++++..+. -+.++.
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence 3344445555555555544444331 12222 3455666677777888887777766542 122332
Q ss_pred --HHHHHHHHHHhccCcHHHHHHHHHHhhHC------CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CC
Q 038516 521 --ITFLSLLSACSHSGLVERGKILWNQMKEH------SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES--------PY 583 (708)
Q Consensus 521 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~ 583 (708)
.+++.|...|.+.|++++|.+++++++.. +..+. ...++.|...|.+.+++++|.++|.+. +.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~ 445 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD 445 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC
Confidence 45778888888899999999888887654 11222 456778888888888888888887765 33
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 584 SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
.+.....+..|...|...|+++.|+++.+.+..
T Consensus 446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 446 HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 322356688899999999999999999888874
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.05 E-value=3e-05 Score=79.02 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=55.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHhc-C-
Q 038516 561 MVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLST-CVAKRNSRMVIQAAEQVL-RLDPEDGTTHILLSNLYAAT-G- 636 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~-g- 636 (708)
-++.+...++|++|++.-.+-..+ |-..-|..+..+ +.+.|+...+..++++-- -.+|.|-.+|-.+..-.... |
T Consensus 1298 aidl~ien~qwdk~idtak~qnyk-pil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt 1376 (1636)
T KOG3616|consen 1298 AIDLMIENDQWDKAIDTAKKQNYK-PILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGT 1376 (1636)
T ss_pred HHHHHHhcccHHHHHHHHHhcccH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCc
Confidence 468899999999999888776555 545555555444 566899999999888653 35777777777654433332 2
Q ss_pred CchHHHH
Q 038516 637 RWDCVAK 643 (708)
Q Consensus 637 ~~~eA~~ 643 (708)
+.+||-.
T Consensus 1377 ~~~eay~ 1383 (1636)
T KOG3616|consen 1377 NCAEAYH 1383 (1636)
T ss_pred chHHHHH
Confidence 5555543
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=5.1e-06 Score=85.51 Aligned_cols=539 Identities=12% Similarity=0.086 Sum_probs=269.1
Q ss_pred cchhhHHHH--HHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHc-C-------C-CCCcc
Q 038516 48 PYMYNNVLS--MYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFE-C-------L-RPNGL 116 (708)
Q Consensus 48 ~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g-------~-~p~~~ 116 (708)
+.+...+++ .|..-|+.+.|.+-.+-++. -..|..|.+.+.+..+ .+-|.-.+-.|... | . .|+ .
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 334444443 35667888888777776663 4567888877777777 66666555555321 1 1 121 2
Q ss_pred hHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-CcccHHHHHHHHhcCC
Q 038516 117 TFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-DAVAWNSIILGNFKND 195 (708)
Q Consensus 117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g 195 (708)
+=..+.-.....|.+++|+.++++-.+.. .|-+.|...|.|++|.++-+.-.+- =..+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 22222223346788888888888877653 4566778889999998887654432 1234555556666677
Q ss_pred ChhHHHHHHHHHH----------hCC---------CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHH
Q 038516 196 KMKEGLSLFGAMV----------GSG---------VNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENA 256 (708)
Q Consensus 196 ~~~~A~~~~~~m~----------~~g---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 256 (708)
+.+.|++.|++-. ... -.-|...|..--.-+-..|+.+.|..+|.... -|-.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhh
Confidence 8888888776531 111 01122223333333345566666666655433 3456
Q ss_pred HHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCC-----
Q 038516 257 LLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSAL----- 331 (708)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~----- 331 (708)
+++..|-.|+.++|-++-++- .|....-.|.+.|-..|++.+|...|.+... |...|+.|-..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa----------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA----------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHhcCHHHH
Confidence 667777778888887766553 4555666677888888888888888876643 23333332211
Q ss_pred --------C--CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC--------------CCEeee
Q 038516 332 --------P--ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE--------------KDIVLW 387 (708)
Q Consensus 332 --------~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~ 387 (708)
+ +.-.|-++|++. |. -....+..|-+.|.+.+|+++--+-.+ .|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1 122222233221 10 011223445555655555544222111 122223
Q ss_pred hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH--hCCCC---chhHHHHHHH
Q 038516 388 TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK--TGHGV---EMSVCGSLVD 462 (708)
Q Consensus 388 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~~~~~l~~ 462 (708)
+.-..-++.+.++++|..++-...+ |.-.+..|...+ +.-..++-+.|.- .+..+ -..+...+..
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence 3333334444555555554433221 222222232221 1111111122210 01111 1234445566
Q ss_pred hhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH-------------HHHHHHCCCCCChHHHHHHHHH
Q 038516 463 MYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV-------------FEVILEHGLRPDEITFLSLLSA 529 (708)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~~~~~ll~~ 529 (708)
.|.++|.+..|-+-|.+.-.. -..++++.+.|+.++..-. -+-+.....+.|..+...++.-
T Consensus 1154 ~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF 1228 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF 1228 (1416)
T ss_pred HHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh
Confidence 666677666666655443211 1123445555554432100 0011112234444455555544
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----------
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV---------- 599 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~---------- 599 (708)
|.+..-++-.-.+|+.... + ....|..+-. ..|-+++|.+.+.++..+......++.|-.-..
T Consensus 1229 YTKgqafd~LanFY~~cAq--i--Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q 1301 (1416)
T KOG3617|consen 1229 YTKGQAFDHLANFYKSCAQ--I--EIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQ 1301 (1416)
T ss_pred hhcchhHHHHHHHHHHHHH--h--hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333333333221 0 1111111111 124456666666666544223333333322111
Q ss_pred h-cCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 600 A-KRNSRMVIQAAEQVLRLDPEDG------TTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 600 ~-~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
. ..|......-++.+++ .|..+ ..|..|+..|....+|.+|-+.+..|+.+
T Consensus 1302 ~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1302 IMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 1 2255555555555554 34333 34778899999999999999999999865
No 87
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.6e-06 Score=84.65 Aligned_cols=248 Identities=14% Similarity=0.125 Sum_probs=118.6
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHH---HHcCCCCccch--HHHHHHHHH-----------HCCCC
Q 038516 288 MIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIIS---ATSALPASAYG--KPLHALVIK-----------TGYDS 351 (708)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~---~~~~~~~~~~a--~~~~~~~~~-----------~~~~~ 351 (708)
|.-.+...|+-++|..+|....+. .++|........+ +.....++-.. ...++.... ..-.-
T Consensus 230 layVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 230 LAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445566789999999999888876 4566544333222 22222222221 111111100 00011
Q ss_pred chhHHhHHHHHHHhcCCChhHHHHHhhcCCCC-EeeehhhHHHHhc--CCChHHHHHHHHHHhHCCCccCH--HHHHHHH
Q 038516 352 SVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD-IVLWTEMIIGHSR--MGDGECAIKLFCKMCREGLKCDN--FALSGAL 426 (708)
Q Consensus 352 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~--~t~~~ll 426 (708)
....-+.++..|. +..+.+.++...++... ...+..++....+ ...+..+.+++...-+. .|.. ......+
T Consensus 308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~a 383 (652)
T KOG2376|consen 308 AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRA 383 (652)
T ss_pred HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHH
Confidence 1111123333332 33445555554444432 2233333333222 22355666666555443 2332 3333444
Q ss_pred HHHhCcccHHHHHHHHH--------HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC------CCC----hHHH
Q 038516 427 SACADLAILKQGEMIHS--------QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL------HPD----LKCW 488 (708)
Q Consensus 427 ~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~ 488 (708)
......|+++.|.+++. .+.+.+ ..+.+...++..+.+.++.+.|..++.+.+ .+. ..+|
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~ 461 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM 461 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence 44566777777777766 333333 233445566666666666666666665442 111 1223
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 038516 489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQ 545 (708)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 545 (708)
..+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-+.
T Consensus 462 ~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 462 REAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 333333445566666666666666642 44556666666666554 44555544433
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=1.7e-08 Score=99.72 Aligned_cols=213 Identities=17% Similarity=0.154 Sum_probs=157.7
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 038516 432 LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVF 508 (708)
Q Consensus 432 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 508 (708)
.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+.++ .|....-.|.-.|...|.-..|++.+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344445544555444443 33455566666666667777777777777653 35667777778888888888999998
Q ss_pred HHHHHCCCCCChHHHHHHH-----------HHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHH
Q 038516 509 EVILEHGLRPDEITFLSLL-----------SACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAEN 576 (708)
Q Consensus 509 ~~m~~~g~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~ 576 (708)
++-+... |-. ..+. ..+..........++|-.+... +..+|+.+...|+-.|.-.|++++|.+
T Consensus 377 ~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 377 DKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 8887642 111 0000 1223333445555555555444 666888889999999999999999999
Q ss_pred HHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 577 LIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 577 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.|+.+ ..+|.|..+|+.|+..++...+.++|+.+|.+++++.|.-..++..||..|...|.|+||.+.|-.+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 555457888999999999999999999999999999999999999999999999999999998876644
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.5e-07 Score=86.85 Aligned_cols=409 Identities=13% Similarity=0.059 Sum_probs=215.9
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CC-hhHHHHHHHHHHcCCCchH
Q 038516 224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PD-LVSWNSMIAGYMENGNGEK 300 (708)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 300 (708)
++....|+++.|...|-+.+... ++|...|..-..+|++.|++++|.+=-.+-.+ |+ ...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45677899999999998888775 34778888888899999999888765444433 33 3568888888888899999
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCc---cchHHHHHHHHHHC---CCCchhHHhHHHHHHHh---------
Q 038516 301 AVDMFVALRRMSLLKPDEYTFAAIISATSALPAS---AYGKPLHALVIKTG---YDSSVFVGTTLLNMYFK--------- 365 (708)
Q Consensus 301 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~--------- 365 (708)
|+.-|.+=.+. .+.+...+..+..+....... -..-.++..+...- .......|..++..+-+
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999887764 445556666666665111000 00000111000000 00000111111111110
Q ss_pred -cCCChhHHHHHhhcCCCCEeeehhhHHHHh-cCCChH----HHHHHHHHHhH-CCCccCHHHHHHHHHHHhCcccHHHH
Q 038516 366 -NGDAESPQKVFMLIAEKDIVLWTEMIIGHS-RMGDGE----CAIKLFCKMCR-EGLKCDNFALSGALSACADLAILKQG 438 (708)
Q Consensus 366 -~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~----~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a 438 (708)
-.++..+.-.+...... .+...-.... ....+. .......++.+ ....--..-...+.++..+..++..+
T Consensus 167 ~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred ccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 00011111111000000 0000000000 000000 00000000000 00000011123344444455556666
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCC---hHHHHH-------HHHHHHhcCChHHHHHHH
Q 038516 439 EMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPD---LKCWNA-------LLGGYSHYGMAEEAFMVF 508 (708)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-------li~~~~~~g~~~~A~~~~ 508 (708)
.+-+....... .+..-++....+|...|.+..+...-+...+.. ..-|+. +..+|.+.++++.++..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 66555555544 444555566666666666666655554443211 111222 333555667777777777
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 038516 509 EVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPY-SEI 586 (708)
Q Consensus 509 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 586 (708)
++.+..-..||. ..+....+++....+...- +.|.. .-...-+..+.+.|++.+|...|.++-. .|.
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 776654334332 1222333444443333322 23332 1112225667788888888888888733 334
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
|...|.....+|.+.|++..|+.-++..++++|+....|..-+.++....+|++|.+.+.+.++.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777778888888888888888888888888888888888888888888888888877654
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=2.7e-08 Score=95.32 Aligned_cols=192 Identities=13% Similarity=0.046 Sum_probs=114.7
Q ss_pred CCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-CC---ChHHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 038516 451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-HP---DLKCWN-ALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS 525 (708)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 525 (708)
.|.......+...+...++-+.+..-+++.. .+ +..++. .....+...|++++|++++.+. .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 4444444444444443344555555554443 11 111222 2223445567777777766542 24455566
Q ss_pred HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH----HHhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHh
Q 038516 526 LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL----LSRAGLLDEAENLIAESPYS-EIRIELWRTLLSTCVA 600 (708)
Q Consensus 526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~ 600 (708)
.+..+.+.++++.|.+.++.|.+ +..|. +...|+.+ +.-.+.+.+|..+|+++... ++++.+++.++.++..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 66677777777777777777765 22332 22223332 22233678888888887433 3567777778778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc-hHHHHHHHHHhcC
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW-DCVAKMRRKMKGS 651 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~ 651 (708)
.|++++|+..++++++.+|+++.+...++-+....|+. +++.+++.+++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888 5567778777654
No 91
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1e-05 Score=83.35 Aligned_cols=222 Identities=15% Similarity=0.056 Sum_probs=143.8
Q ss_pred HhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCC-----------CcccHHHHHH
Q 038516 19 CASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKR-----------SLVSYNALIA 87 (708)
Q Consensus 19 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~ 87 (708)
|...|+...|.+-...+ .+..+|..+..+|.+..+++-|.-.+-.|... +..--..-..
T Consensus 738 yvtiG~MD~AfksI~~I----------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvA 807 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI----------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVA 807 (1416)
T ss_pred EEEeccHHHHHHHHHHH----------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHH
Confidence 34445555555444333 46678999999999999999998888887621 1111111222
Q ss_pred H-HHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516 88 A-YSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF 166 (708)
Q Consensus 88 ~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 166 (708)
+ -.+.|. .++|..+|++-++. ..+=+.|-..|.+.+|.++-+.--+..+ ..+|-....-+-..+|.
T Consensus 808 vLAieLgM-lEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 808 VLAIELGM-LEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHhh-HHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccH
Confidence 2 234566 88999999887763 3344455567888888877553222221 23444455555566788
Q ss_pred hHHHHHhccCCC-----------------------CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 038516 167 ESAKRIFGLIGD-----------------------KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLL 223 (708)
Q Consensus 167 ~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 223 (708)
+.|++.|+.... +|...|.--...+-..|+.+.|+.+|...++ |-.++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 888888765432 2444455555556677888899988888765 56677
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccC
Q 038516 224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIE 278 (708)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 278 (708)
+..|-.|+.++|.++-++ .-|....-.|.+.|-..|++.+|...|.+..
T Consensus 946 rI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777788888888777654 2355566677788888888888888776653
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2.6e-06 Score=77.18 Aligned_cols=404 Identities=12% Similarity=0.085 Sum_probs=210.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHH-HHHHHHc
Q 038516 218 SYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNS-MIAGYME 294 (708)
Q Consensus 218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~ 294 (708)
-+..++..+.+..++..+.+++....+.. +.+....+.|..+|-...++..|-..++++.. |...-|.. -.+.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 34455555555555666665555544442 22444455556666666666677666666654 44443432 3456677
Q ss_pred CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHH--HcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhH
Q 038516 295 NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISA--TSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESP 372 (708)
Q Consensus 295 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 372 (708)
.+.+.+|+.+...|.+. |+...-..-+.+ .-..+++..+..+.++.... .+..+.+.......+.|+++.|
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 88888888888877543 332222222222 22445555555555543321 1333334444445566666666
Q ss_pred HHHHhhcCCC----CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH----HHHHHHHHHhCcccHHHHHHHHHH
Q 038516 373 QKVFMLIAEK----DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF----ALSGALSACADLAILKQGEMIHSQ 444 (708)
Q Consensus 373 ~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 444 (708)
.+-|+...+- ....||.-+ +..+.|++..|++...+++++|++-.+. ..+-.+++ ...|+. ..++
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh-- 236 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLH-- 236 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHH--
Confidence 6666655442 223344333 2334456666666666666666532110 00000000 000000 0000
Q ss_pred HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 038516 445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP- 518 (708)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 518 (708)
.+ --...+|.-...+.+.|+++.|.+.+-+|++ .|++|...+.-.-. .+++.+..+-+.-+.+. .|
T Consensus 237 --~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--nPf 308 (459)
T KOG4340|consen 237 --QS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--NPF 308 (459)
T ss_pred --HH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--CCC
Confidence 00 0011233333455688999999999999973 46777666543322 34555555555556554 34
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCC-CcChHHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 038516 519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSL-IPGHKHYSCMVSLLSR-AGLLDEAENLIAESPYSEIRIELWRTLLS 596 (708)
Q Consensus 519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 596 (708)
-..||..++-.|++..-++.|-.++.+=..... -.+...|+ |++++.- .-..++|.+-++.+... -..-++.+..
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~--l~~kLRklAi 385 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM--LTEKLRKLAI 385 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 467899999999999999988887765332211 11233344 3444443 34667777666554211 0111222211
Q ss_pred -H--HHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 597 -T--CVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 597 -~--~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
. -+..++ ...++.-+++.+++- -.+....+++|+...++.-+.+.|+.-.+
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1 111221 223344455555541 12356778999999999999999986654
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.95 E-value=2.7e-06 Score=87.78 Aligned_cols=176 Identities=14% Similarity=0.057 Sum_probs=112.4
Q ss_pred HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh----C----------CCCchh--HHHHHHHhhH
Q 038516 402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT----G----------HGVEMS--VCGSLVDMYA 465 (708)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~ 465 (708)
.+...+..+..+|+++- |+.+-..|......+....++...... + -+|+.. ++.-+...|-
T Consensus 129 ~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 44556677777786643 333444444444444444554443321 1 123332 3345567777
Q ss_pred hcCCHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 038516 466 KNGDLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL 542 (708)
Q Consensus 466 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 542 (708)
..|++++|.+.++..+ .|+ +..|..-.+.+-+.|++.+|.+.++....... -|...=+-....+.++|++++|.++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888775 344 56777778888888888888888888888532 2445455556677888888888888
Q ss_pred HHHhhHCCCCcChHH------H--HHHHHHHHhcCCHHHHHHHHHhC
Q 038516 543 WNQMKEHSLIPGHKH------Y--SCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 543 ~~~~~~~~~~p~~~~------~--~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
+......+..|.... | .-.+.+|.|.|++..|++.+...
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888876654443221 1 22467788888888888776544
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=2.6e-07 Score=80.78 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=142.3
Q ss_pred HHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC
Q 038516 459 SLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSG 534 (708)
Q Consensus 459 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~ 534 (708)
.|.-.|...|+...|..-+++.++ .+..+|..+...|.+.|+.+.|.+.|++.+.. .|+ ....|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 456678888888888888888763 34567888888888888888888888888884 564 455777777778888
Q ss_pred cHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 535 LVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 535 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
++++|...|++......-|. ..+|..++-+..++|+.+.|.+.+++... .+..+.....+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 88888888888887633332 56788888888888888888888888732 22345566677777778888888888888
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 613 QVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 613 ~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
+.....+-....+...+++-...|+-+.|-++-..+.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88877776666666667777778888888777666654
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=1.1e-06 Score=90.69 Aligned_cols=282 Identities=14% Similarity=0.097 Sum_probs=146.0
Q ss_pred HHHHhcCCChhHHHHHhhcCCC--C-EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHh----C--
Q 038516 361 NMYFKNGDAESPQKVFMLIAEK--D-IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACA----D-- 431 (708)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 431 (708)
..+...|++++|++.+..-... | ..........+.+.|+.++|..+|..+++. .|+...|...+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 3445556666666666554332 2 223344555666667777777777776665 355555555444443 1
Q ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHH-HHHHHHhhCCCCCh-HHHHHHHHHHHhcCChHHHHHHHH
Q 038516 432 LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLR-AAESIFSQVLHPDL-KCWNALLGGYSHYGMAEEAFMVFE 509 (708)
Q Consensus 432 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 509 (708)
....+....+++.+...- |.......+.-.+.....+. .+...+..+....+ .+|+.+-..|....+..-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123455555566554432 22222222222222211222 22222233333332 344444444554444444444444
Q ss_pred HHHHC----C----------CCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHH
Q 038516 510 VILEH----G----------LRPDE--ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLD 572 (708)
Q Consensus 510 ~m~~~----g----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 572 (708)
..... + -.|.. .++..+...|...|++++|++++++.++ ..|+ +..|..-++.|-+.|+++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence 44322 1 01222 2334445566777777777777777776 4565 566777777777777777
Q ss_pred HHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCcc-----hH--HHHHHHHHhcCCchHHH
Q 038516 573 EAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP--EDGT-----TH--ILLSNLYAATGRWDCVA 642 (708)
Q Consensus 573 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~-----~~--~~l~~~~~~~g~~~eA~ 642 (708)
+|.+.++.+....+ |..+=+.....+.+.|+.++|+..+......+- ...- .| .-.|.+|.+.|++..|.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77777777733323 333333344445667777777777666544431 1100 12 24567777788887777
Q ss_pred HHHHHH
Q 038516 643 KMRRKM 648 (708)
Q Consensus 643 ~~~~~~ 648 (708)
+.+...
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 655544
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=2.6e-05 Score=82.36 Aligned_cols=373 Identities=13% Similarity=0.088 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCC-cchhhHHHHHHhccCChHHHHHHhhcCCC---CCcccHHHHHHHHHhCCCChHHHHHH
Q 038516 27 RARQIHALVLTTNHIPINAQS-PYMYNNVLSMYGRCGSIRDARQVFDEIPK---RSLVSYNALIAAYSRDHDHAHLTFRL 102 (708)
Q Consensus 27 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~ 102 (708)
.+..++..+....++ ++ ..+|..|...|....+...|.+.|+..-+ .+..++......|++..+ ++.|..+
T Consensus 474 ~~~al~ali~alrld----~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~-we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRLD----VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEEST-WEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc-HHHHHHH
Confidence 344455555555555 33 35788888888888888888888887643 355677788888888888 8888877
Q ss_pred HHHHHHcCC-CCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCc
Q 038516 103 IDQMEFECL-RPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDA 181 (708)
Q Consensus 103 ~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 181 (708)
.-..-+... ..-...|..+--.+...++...+..-++...+.. +.|...|..+..+|.++|.+..|.++|.....-++
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP 627 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence 333322210 0011122222233456667777766666665554 45677888999999999999999999976665333
Q ss_pred ccHHH---HHHHHhcCCChhHHHHHHHHHHhC------CCCCCcchHHHHHHHHhccCCh-------hHHHHHHHHHHHh
Q 038516 182 VAWNS---IILGNFKNDKMKEGLSLFGAMVGS------GVNPTQFSYSMLLNACSRMGNF-------VCGKVIHARVIIS 245 (708)
Q Consensus 182 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~ 245 (708)
..+-. .....+..|.+.+|+..+...... +..--..++......+...|=. +.+.+.+--...+
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22221 122345668888888777665431 1111122222222222222211 2222222222222
Q ss_pred CC--------------------CCC---hhhHHHHHHhcccCCCh---H---HHHHHHhccCC--CChhHHHHHHHHHHc
Q 038516 246 NT--------------------QVD---LPLENALLDMYSKCSDT---Q---TAFSVFTRIEN--PDLVSWNSMIAGYME 294 (708)
Q Consensus 246 ~~--------------------~~~---~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~ 294 (708)
.. .|+ ......|..-.-+.+.. + -+.+.+-.-.+ .+..+|..++..|.+
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr 787 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR 787 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence 11 122 11111111101111111 1 00010000000 234455555554443
Q ss_pred ----C----CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhc
Q 038516 295 ----N----GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKN 366 (708)
Q Consensus 295 ----~----g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 366 (708)
. .+...|+..+.+..+. ..-+..+|+.+ ......|++.-+..-|-.-.... +.+..+|..+.-.+.+.
T Consensus 788 ~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 788 YFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHH-HHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence 1 1223566666666543 23334444443 33455566666555544433332 45566777777777777
Q ss_pred CCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHH
Q 038516 367 GDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCK 409 (708)
Q Consensus 367 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~ 409 (708)
.+++.|...|.....- |...|--.....-..|+.-++..+|..
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 8888888888776653 333443333333445555555555544
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.87 E-value=2e-07 Score=89.31 Aligned_cols=157 Identities=11% Similarity=0.098 Sum_probs=118.4
Q ss_pred HHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcH
Q 038516 461 VDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH----SGLV 536 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~ 536 (708)
..++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. .+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhH
Confidence 34566788999998888765 55667777888999999999999999999873 4443 44444444432 3479
Q ss_pred HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 038516 537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNS-RMVIQAAEQV 614 (708)
Q Consensus 537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 614 (708)
.+|..+|+++.+ ...+++.+.+.++.+....|++++|.++++++.. .+.++.++..++......|+. +.+.+.+.++
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999876 4567888899999999999999999999988733 334577777887777778877 7788999999
Q ss_pred HhcCCCCcc
Q 038516 615 LRLDPEDGT 623 (708)
Q Consensus 615 ~~~~p~~~~ 623 (708)
...+|+++.
T Consensus 263 ~~~~p~h~~ 271 (290)
T PF04733_consen 263 KQSNPNHPL 271 (290)
T ss_dssp HHHTTTSHH
T ss_pred HHhCCCChH
Confidence 999998764
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.3e-06 Score=83.15 Aligned_cols=431 Identities=13% Similarity=0.046 Sum_probs=252.9
Q ss_pred HHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC-hhhHHHHHHhcccCCCh
Q 038516 189 LGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVD-LPLENALLDMYSKCSDT 267 (708)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 267 (708)
++.+..|+++.|+..|.+..... ++|...|+.=..+++..|++++|.+=-.+.++. .|+ ...|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 56778999999999999988754 337788999999999999999887665555543 455 35688888888889999
Q ss_pred HHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHH-HHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHH
Q 038516 268 QTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKA-VDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHAL 343 (708)
Q Consensus 268 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 343 (708)
++|...|.+-.+ .+...++-+..++. .+.+ .+.|..-.-..++.-++.|-..+-+ ..+ ..++..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~-----~~~---~~~l~~ 154 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSD-----PAY---VKILEI 154 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhcc-----HHH---HHHHHH
Confidence 999999988765 34456666766661 1111 1111110000012222222111110 000 011111
Q ss_pred HHHHCCCCchhHH---hHHHHHHHhcCCChhH-HHHH------------hhcCCC---------------CEeeehhhHH
Q 038516 344 VIKTGYDSSVFVG---TTLLNMYFKNGDAESP-QKVF------------MLIAEK---------------DIVLWTEMII 392 (708)
Q Consensus 344 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~~~------------~~~~~~---------------~~~~~~~li~ 392 (708)
+.. + +.+...| ..++.+.......+.- ...- ..+.++ -..-...+..
T Consensus 155 ~~~-~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 155 IQK-N-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred hhc-C-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 110 0 0000000 0111111111000000 0000 000000 0012344666
Q ss_pred HHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC------chhHHHHHHHhhHh
Q 038516 393 GHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGV------EMSVCGSLVDMYAK 466 (708)
Q Consensus 393 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 466 (708)
+..+..++..|++-+....... -+..-++..-.++...|.+......-....+.|... =...+..+..+|.+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6777788888888888777654 333334444445666666665555444443333211 11122234457778
Q ss_pred cCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHH
Q 038516 467 NGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQ 545 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~ 545 (708)
.++++.|+..|.+.+.+... -....+....++++...+...- +.|.... ...-...+.+.|++..|+..|.+
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88999999999886532111 1122233445556655555544 3454322 23335678899999999999999
Q ss_pred hhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 546 MKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 546 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
+++.. +-|...|..-.-+|.+.|.+.+|++-.+.... .++....|..-+.++....+++.|...|+++++++|++..+
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99854 33578899999999999999999988777633 32345566666777788899999999999999999999998
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 038516 625 HILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 625 ~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
...+.+++..+.......++.+
T Consensus 463 ~~~~~rc~~a~~~~~~~ee~~~ 484 (539)
T KOG0548|consen 463 IDGYRRCVEAQRGDETPEETKR 484 (539)
T ss_pred HHHHHHHHHHhhcCCCHHHHHH
Confidence 8888888776533333344433
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.86 E-value=1.1e-07 Score=81.26 Aligned_cols=94 Identities=10% Similarity=-0.120 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG 636 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 636 (708)
+..++..+...|++++|...++.+ ...+.+...|..++.++...|++++|...++++++++|+++.++..+|.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566667777777777777766 3333456667777777777777777777777777777777777777777777777
Q ss_pred CchHHHHHHHHHhcC
Q 038516 637 RWDCVAKMRRKMKGS 651 (708)
Q Consensus 637 ~~~eA~~~~~~~~~~ 651 (708)
++++|+..++...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777766554
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=5.6e-06 Score=84.16 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=157.7
Q ss_pred HHHhcCCChHHHHHHHHHHhHCCCccCHH-HHHH---HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516 392 IGHSRMGDGECAIKLFCKMCREGLKCDNF-ALSG---ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN 467 (708)
Q Consensus 392 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (708)
..+...|++++|.+.+++..+. .|+.. .+.. ........+....+.+.+.. .....+........+...+...
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence 3455678888888888887765 33332 3221 11111223444444444443 1111222334445566788889
Q ss_pred CCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHHhccCcHHHHHH
Q 038516 468 GDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL-RPDE--ITFLSLLSACSHSGLVERGKI 541 (708)
Q Consensus 468 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~ 541 (708)
|++++|...+++.. +.+...+..+...+...|++++|..++++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999998875 34567788888899999999999999999887521 1232 234567778889999999999
Q ss_pred HHHHhhHCCC-CcChHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038516 542 LWNQMKEHSL-IPGHKHY-S--CMVSLLSRAGLLDEAENL---IAES-PY-S-EIRIELWRTLLSTCVAKRNSRMVIQAA 611 (708)
Q Consensus 542 ~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 611 (708)
+++++..... .+..... + .+...+...|....+.+. .... +. . ............++...|+.+.|...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999864321 1211111 1 333444445533333332 1111 11 1 111222234555667789999999999
Q ss_pred HHHHhcCCC---------CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 612 EQVLRLDPE---------DGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 612 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+.+....-. ........+.++...|++++|.+.+......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887653211 2344567788899999999999999887654
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.79 E-value=5.9e-07 Score=81.26 Aligned_cols=149 Identities=11% Similarity=0.059 Sum_probs=114.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516 492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (708)
+..|...|+++.+....+++.. |. ..+...++.+++...++...+. -+.+...|..|+..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCH
Confidence 3467788888776544432221 11 0222366677777777777762 234577899999999999999
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 572 DEAENLIAES-PYSEIRIELWRTLLSTC-VAKRN--SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
++|...++++ ...+.+..++..+..++ ...|+ .++|.+.++++++.+|+++.++..++..+...|++++|+..+++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999998 44435788888888764 66676 59999999999999999999999999999999999999999999
Q ss_pred HhcCCC
Q 038516 648 MKGSML 653 (708)
Q Consensus 648 ~~~~~~ 653 (708)
+.+...
T Consensus 170 aL~l~~ 175 (198)
T PRK10370 170 VLDLNS 175 (198)
T ss_pred HHhhCC
Confidence 987644
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.79 E-value=0.00013 Score=77.28 Aligned_cols=178 Identities=10% Similarity=-0.018 Sum_probs=126.0
Q ss_pred CChHHHHHHhhcCCCCC---cccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHH
Q 038516 62 GSIRDARQVFDEIPKRS---LVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLH 138 (708)
Q Consensus 62 g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 138 (708)
.+...|...|-+..+.| ...|..|-..|....+ ...|...|+...+-. ..+......+...++...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34778888776654433 3468888888888777 889999999988753 345567888899999999999998882
Q ss_pred HHHHHhC-CCCchhHHhHHHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC
Q 038516 139 AQVIKYG-SSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNP 214 (708)
Q Consensus 139 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 214 (708)
-..-+.. ...-..-|..+--.|.+.++...|..-|+..-+ .|...|..+..+|.+.|++..|+++|.+... +.|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence 2221111 111222334455567788999999998886654 4778899999999999999999999998876 455
Q ss_pred CcchHHHH--HHHHhccCChhHHHHHHHHHHH
Q 038516 215 TQFSYSML--LNACSRMGNFVCGKVIHARVII 244 (708)
Q Consensus 215 ~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~ 244 (708)
+. +|... ....+..|...++...+..+..
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 43 22222 2233577888888888877654
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=4.9e-07 Score=85.67 Aligned_cols=179 Identities=12% Similarity=0.046 Sum_probs=113.1
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----H
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD-L---KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI----T 522 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~ 522 (708)
....+-.+...+...|++++|...|+++.. |+ . ..+..+..++...|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 444555666677777777777777776642 22 1 35566677777777777777777777764 34322 2
Q ss_pred HHHHHHHHhcc--------CcHHHHHHHHHHhhHCCCCcChH-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH
Q 038516 523 FLSLLSACSHS--------GLVERGKILWNQMKEHSLIPGHK-HYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT 593 (708)
Q Consensus 523 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 593 (708)
+..+..++... |++++|.+.++.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~------------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL------------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH------------HHHHHH
Confidence 33333344433 5667777777776652 33321 12111111 0000000 011124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667889999999999999999977754 67899999999999999999999988654
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=1.8e-07 Score=79.90 Aligned_cols=124 Identities=10% Similarity=0.020 Sum_probs=102.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 038516 505 FMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-P 582 (708)
Q Consensus 505 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 582 (708)
..++++.++ +.|+. +..+...+...|++++|...|+.+.. ..| +...+..++.++.+.|++++|...|+++ .
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 356666666 35654 44566678889999999999999887 445 5778888999999999999999999998 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 583 YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 583 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
..+.++..+..++.++...|+.++|...+++++++.|+++..+..++.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 3435788899999999999999999999999999999999999888876644
No 105
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.77 E-value=1.7e-07 Score=78.19 Aligned_cols=118 Identities=11% Similarity=0.061 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
....-.+...+...|++++|.++|+-. ...+.+...|..|+.+|...|++++|+..|.++..++|+++.++.+++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444556778888999999999999988 3443468889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHH
Q 038516 634 ATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNM 695 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 695 (708)
..|+.++|++.|+......- .||+..++..+-+.+-..+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHh
Confidence 99999999999998876421 3678777777666655444
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=0.0001 Score=85.33 Aligned_cols=363 Identities=12% Similarity=-0.004 Sum_probs=214.7
Q ss_pred HHhcccCCChHHHHHHHhccCCCChhH--HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCcc
Q 038516 258 LDMYSKCSDTQTAFSVFTRIENPDLVS--WNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASA 335 (708)
Q Consensus 258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~ 335 (708)
...+...|++.+|..........+... ...........|+++.+..++..+... ....+..........+...++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHH
Confidence 344556677777766666554432211 111223345567777777776655322 11112222233334445678888
Q ss_pred chHHHHHHHHHHCC------CCc--hhHHhHHHHHHHhcCCChhHHHHHhhcCC--C--CE----eeehhhHHHHhcCCC
Q 038516 336 YGKPLHALVIKTGY------DSS--VFVGTTLLNMYFKNGDAESPQKVFMLIAE--K--DI----VLWTEMIIGHSRMGD 399 (708)
Q Consensus 336 ~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~~~ 399 (708)
++..++......-- .+. ......+...+...|+++.|...+++... + +. ...+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 88888877654311 111 12222334456678899999888877543 1 11 233455666778899
Q ss_pred hHHHHHHHHHHhHCCC-----ccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCCC---chhHHHHHHHhhHhc
Q 038516 400 GECAIKLFCKMCREGL-----KCDNFALSGALSACADLAILKQGEMIHSQAEK----TGHGV---EMSVCGSLVDMYAKN 467 (708)
Q Consensus 400 ~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~ 467 (708)
+++|...+++.....- .+...+...+...+...|+++.|...+..... .+... ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 9999998888764211 11123444455567788999999888776554 22211 223344556667778
Q ss_pred CCHHHHHHHHhhCCC------C--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHH-----HHHHHHHhcc
Q 038516 468 GDLRAAESIFSQVLH------P--DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITF-----LSLLSACSHS 533 (708)
Q Consensus 468 g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~ 533 (708)
|++++|...+.+... + ....+..+...+...|++++|...++++....-.. ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 999999988877631 1 13344456667888999999999988886521111 11111 1112344557
Q ss_pred CcHHHHHHHHHHhhHCCCCcC---hHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC--CHHHHHHHHHHHHhcCC
Q 038516 534 GLVERGKILWNQMKEHSLIPG---HKHYSCMVSLLSRAGLLDEAENLIAESP-----YSEI--RIELWRTLLSTCVAKRN 603 (708)
Q Consensus 534 ~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~--~~~~~~~l~~~~~~~~~ 603 (708)
|+.+.|.+++........... ...+..+..++...|++++|...++++. ...+ ....+..+..++...|+
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~ 746 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR 746 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence 889999888777654211111 1113456778889999999998888761 1101 12345556667888999
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 038516 604 SRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 604 ~~~a~~~~~~~~~~~p~~ 621 (708)
.++|...+.+++++....
T Consensus 747 ~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 747 KSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHHhCcc
Confidence 999999999999876443
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.63 E-value=2.8e-05 Score=89.87 Aligned_cols=362 Identities=11% Similarity=-0.046 Sum_probs=221.5
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCH-hHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHh
Q 038516 287 SMIAGYMENGNGEKAVDMFVALRRMSLLKPDE-YTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFK 365 (708)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 365 (708)
.....+...|++.+|...+...... +.. .............|+.+.+..++..+.......+..........+..
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3445566777777776655433211 100 11111222334556666666666554221112223333444555677
Q ss_pred cCCChhHHHHHhhcCC----CC---E-----eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH----HHHHHHHHHH
Q 038516 366 NGDAESPQKVFMLIAE----KD---I-----VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN----FALSGALSAC 429 (708)
Q Consensus 366 ~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~ 429 (708)
.|+++++...+..... .+ . .....+...+...|++++|...+++....-...+. .....+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 8899998888875532 11 1 01112234456789999999999987763111121 2334445556
Q ss_pred hCcccHHHHHHHHHHHHHhCC---CC--chhHHHHHHHhhHhcCCHHHHHHHHhhCCC-------C----ChHHHHHHHH
Q 038516 430 ADLAILKQGEMIHSQAEKTGH---GV--EMSVCGSLVDMYAKNGDLRAAESIFSQVLH-------P----DLKCWNALLG 493 (708)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~ 493 (708)
...|+++.|...+.......- .+ .......+...+...|++++|...+++... + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 778999999998887664211 11 123455667778899999999998876531 1 1223445666
Q ss_pred HHHhcCChHHHHHHHHHHHHCC--CCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCcChH--H--HHHHHH
Q 038516 494 GYSHYGMAEEAFMVFEVILEHG--LRPD--EITFLSLLSACSHSGLVERGKILWNQMKEH--SLIPGHK--H--YSCMVS 563 (708)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~--~--~~~l~~ 563 (708)
.+...|++++|...+++..... ..+. ...+..+.......|++++|...++.+... ....... . ......
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 7778899999999999886531 1222 223444555778899999999999888553 1111111 0 011224
Q ss_pred HHHhcCCHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHH
Q 038516 564 LLSRAGLLDEAENLIAESPYSE-IRI----ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP------EDGTTHILLSNLY 632 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~ 632 (708)
.+...|+.+.|..++....... ... ..+..+..++...|+.++|...++++++... ....++..++.+|
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 4556899999999987763221 111 1234566677889999999999999987532 2234577889999
Q ss_pred HhcCCchHHHHHHHHHhcCC
Q 038516 633 AATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 633 ~~~g~~~eA~~~~~~~~~~~ 652 (708)
...|+.++|...+.++.+..
T Consensus 742 ~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999887643
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=2.6e-06 Score=86.90 Aligned_cols=190 Identities=16% Similarity=0.189 Sum_probs=151.0
Q ss_pred CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516 449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528 (708)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 528 (708)
+.+|-...-..+...+.+.|-..+|..+|+++ ..|.-.|.+|+..|+..+|..+..+..+. +||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 45566666677888888999999999999764 56777888899999999999998888873 788888888888
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMV 607 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a 607 (708)
..-..--+++|+++.+..... .-..+.....+.++++++.+.++.. ...+....+|-.++.+..+.++.+.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 877777788888887765432 1122334445678899999888776 44434677888888888889999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 608 IQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
...|.+.+.++|++...|+++..+|.+.|+..+|...++++.+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999998887765
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=6.4e-06 Score=89.80 Aligned_cols=201 Identities=16% Similarity=0.123 Sum_probs=167.8
Q ss_pred CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 038516 451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--------PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT 522 (708)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 522 (708)
+.+...|-..|......++.++|++++++.++ .-...|.++++.-...|.-+...++|+++.+. ---...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 34456667778888889999999999988752 23567999998888889889999999999984 222455
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHH
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI---RIELWRTLLSTCV 599 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~ 599 (708)
|..|...|.+.+.+++|.++|+.|.+. +.-....|..+++.+.+..+-++|..+++++..--| ...+..-.+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 889999999999999999999999986 335677899999999999999999999988722113 3556667777788
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLG 654 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 654 (708)
+.||.+++..+++..+...|.....|..+++.-.++|+.+.++.+|+++...++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999999999999887653
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=9.8e-05 Score=75.07 Aligned_cols=190 Identities=14% Similarity=0.067 Sum_probs=101.6
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CCh--HHHHHHHHHHHhcCC
Q 038516 428 ACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDL--KCWNALLGGYSHYGM 500 (708)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~ 500 (708)
.+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+ ++. ..|..+...+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 3344455555555555444433 23344555666777777777777777776642 222 245567777888888
Q ss_pred hHHHHHHHHHHHHCCC-CCChHHH-H--HHHHHHhccCcHHHHHHH--HHHhhHCCCC--cChHHHHHHHHHHHhcCCHH
Q 038516 501 AEEAFMVFEVILEHGL-RPDEITF-L--SLLSACSHSGLVERGKIL--WNQMKEHSLI--PGHKHYSCMVSLLSRAGLLD 572 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~ 572 (708)
+++|..+++++..... .+..... + .++.-+...|....+.++ +......... .........+.++...|+.+
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 281 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD 281 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence 8888888888764321 1111111 1 222333333332222222 1111110101 11112224567778888999
Q ss_pred HHHHHHHhCCC--C-----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516 573 EAENLIAESPY--S-----EI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD 618 (708)
Q Consensus 573 ~A~~~~~~~~~--~-----~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 618 (708)
+|...++.+.. . .. ...+......++...|+.+.|.+.+..++.+-
T Consensus 282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99988877611 1 00 11222223344667999999999999888653
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=2.6e-05 Score=79.87 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=183.8
Q ss_pred CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHH
Q 038516 349 YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSA 428 (708)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 428 (708)
++|--..-..+...+.+.|-...|..+|+++. .|...|.+|+..|+..+|..+..+-.+ -+||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 34555556678888999999999999998765 477789999999999999999888777 48899999999999
Q ss_pred HhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHH
Q 038516 429 CADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAF 505 (708)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 505 (708)
..+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 98888899999998765432 112333334457899999999987643 35678999999999999999999
Q ss_pred HHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 038516 506 MVFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES--- 581 (708)
Q Consensus 506 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 581 (708)
+.|..... +.||. ..|+.+-.+|.+.++-.+|...+.+..+.. .-+...|...+-.....|.+++|.+.++++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999998 57864 669999999999999999999999999876 344556777778889999999999999887
Q ss_pred CCCCCCHHHHHHHHHH
Q 038516 582 PYSEIRIELWRTLLST 597 (708)
Q Consensus 582 ~~~~~~~~~~~~l~~~ 597 (708)
+....+..+...+...
T Consensus 617 ~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRT 632 (777)
T ss_pred hhhcccchhhHHHHHH
Confidence 3222344444444433
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.60 E-value=5.8e-06 Score=74.25 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=119.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516 489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA 568 (708)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (708)
..+-..+...|+-+....+..+.... ..-|......+.......|++..|...+.+... .-++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHc
Confidence 45556677778877777777775543 122344455577778888888888888888876 4455688888888888888
Q ss_pred CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516 569 GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 569 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
|++++|..-|.++ ...+.++.+.+.++..+.-.||.+.|+.++..+....+.+..+...|+.+....|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888887776 34435677888888888888999999998888888888888888888888888999988887765
No 113
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.3e-05 Score=78.34 Aligned_cols=141 Identities=15% Similarity=0.124 Sum_probs=111.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL-SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA 568 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 568 (708)
....+...|++++|+..++.++.. .||...|..+. ..+...++..+|.+.++++.. ..|+ ....-.+..+|.+.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhc
Confidence 334455678999999999998885 67666655544 488899999999999999987 5566 45556678999999
Q ss_pred CCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 569 GLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 569 g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
|++.+|...+++.. ..+.++..|..|..+|...|+..++.... +..|.-.|+|++|......
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence 99999999998883 34357889999999999999988876654 4467778999999999888
Q ss_pred HhcCC
Q 038516 648 MKGSM 652 (708)
Q Consensus 648 ~~~~~ 652 (708)
.+++.
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 87753
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=1.4e-06 Score=74.24 Aligned_cols=107 Identities=19% Similarity=0.181 Sum_probs=85.2
Q ss_pred HHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 543 WNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 543 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
++.+.. ..|+ ......++..+...|++++|.+.++.+ ...+.+...|..+...+...|+++.|...++++++.+|+
T Consensus 6 ~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 6 LKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred HHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444443 3443 345666778888888999998888887 334346788888888888899999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++..+..++.+|...|++++|...++...+.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887764
No 115
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.58 E-value=0.00019 Score=66.75 Aligned_cols=324 Identities=12% Similarity=0.059 Sum_probs=184.1
Q ss_pred HHHhcccCCChHHHHHHHhccCCCChhHHHHHH---HHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHcCCC
Q 038516 257 LLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMI---AGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAA-IISATSALP 332 (708)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~~~~~~~ 332 (708)
+-+.+...|++.+|+.-|....+.|+..|.++. ..|...|+..-|+.-+.++.+ .+||-..-.. --..+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcc
Confidence 444455567777777777777776666666654 357777777777777777764 4666432211 112345566
Q ss_pred CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhH
Q 038516 333 ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCR 412 (708)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 412 (708)
.++.|..-|+.++... |+.. ....++.+.--.++-+.+ ...+..+.-.|+...|++....+++
T Consensus 121 ele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHh
Confidence 6666666666665543 1110 011111111111111111 1223345567888888888888776
Q ss_pred CCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CChHHHHH
Q 038516 413 EGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PDLKCWNA 490 (708)
Q Consensus 413 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ 490 (708)
-. +-|...+..-..+|...|.+..|..-++...+..- .+...+--+-..+...|+.+.++....+.++ ||-...
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C-- 259 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC-- 259 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH--
Confidence 42 33444555556667778888888776666655442 3444444566777888999999888888764 443211
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-----hHHHHHHHHHH
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-----HKHYSCMVSLL 565 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~ 565 (708)
|..-....+..+.++.|.+ ....++|.++.+..+...+. .|. ...+..+-.++
T Consensus 260 ----f~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 ----FPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred ----HHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecc
Confidence 1111122223333333332 12344555555555555543 222 22344455666
Q ss_pred HhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 566 SRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 566 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
...|++-+|++...+.. ..+.+..++..-..+|.....++.|+.-|+++.+.+|++..+..
T Consensus 318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 67777777777776663 33234667777777777777788888888888888887765433
No 116
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=9.3e-06 Score=79.05 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=115.6
Q ss_pred hHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc--H
Q 038516 464 YAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYG-MAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGL--V 536 (708)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~--~ 536 (708)
+...++.++|+.+.++++. .+..+|+.....+...| ++++++..++++.+. .| +...|+.....+.+.|+ .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 3345566677777766642 23445665555566666 567788888777774 33 33445544444444454 2
Q ss_pred HHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc---CC----HHHH
Q 038516 537 ERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK---RN----SRMV 607 (708)
Q Consensus 537 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~~----~~~a 607 (708)
+++..+++++.+ ..| +..+|+....++.+.|++++|++.++++ ...+.+...|+.....+... |. .+.+
T Consensus 125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 566777777765 334 4566777777777778888888887777 22324566677666655443 22 2456
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhc
Q 038516 608 IQAAEQVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKMKG 650 (708)
Q Consensus 608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~ 650 (708)
..+..+++.++|+|.++|..++.++.. .++..+|.+++....+
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 777778888888888888888888877 3455667777766544
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=1e-05 Score=86.92 Aligned_cols=139 Identities=9% Similarity=-0.017 Sum_probs=94.5
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHH
Q 038516 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSC 560 (708)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ 560 (708)
.++..+..|.....+.|++++|..+++...+ +.||.. .+..+...+.+.+++++|...+++... ..|+ ......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 3466677777777777777777777777777 466543 355566677777777777777777776 3443 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516 561 MVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
+..++...|++++|..+|+++....| +...|.++..++...|+.+.|...|+++++...+....|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 67777777777777777777743323 366777777777777777777777777777655544433
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.56 E-value=5.1e-06 Score=74.57 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=112.6
Q ss_pred CCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHH
Q 038516 517 RPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLL 595 (708)
Q Consensus 517 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~ 595 (708)
.|+......+-..+...|+-+....+...... ....+......++....+.|++.+|...++++ ...++|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 55433335555677778888888777776543 23335566777999999999999999999998 45558999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 596 STCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 596 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
.+|.+.|+.+.|...|.+++++.|+++.+...|+-.|.-.|+++.|..++......+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999886543
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.53 E-value=1.2e-05 Score=72.67 Aligned_cols=155 Identities=12% Similarity=0.152 Sum_probs=115.1
Q ss_pred HHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 038516 461 VDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGK 540 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 540 (708)
+..|...|+++......+.+..|. ..+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346777787777655544332221 01223567788888888888752 335667888888999999999999
Q ss_pred HHHHHhhHCCCCc-ChHHHHHHHHHH-HhcCC--HHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038516 541 ILWNQMKEHSLIP-GHKHYSCMVSLL-SRAGL--LDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVL 615 (708)
Q Consensus 541 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 615 (708)
..|++..+ +.| +...+..++.++ .+.|+ .++|.++++++. ..+.+...+..++..+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999987 445 467777888864 67777 599999999983 333467888888889999999999999999999
Q ss_pred hcCCCCcchHH
Q 038516 616 RLDPEDGTTHI 626 (708)
Q Consensus 616 ~~~p~~~~~~~ 626 (708)
++.|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99988776443
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=6.5e-06 Score=77.99 Aligned_cols=184 Identities=14% Similarity=0.049 Sum_probs=128.9
Q ss_pred cCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCC-hH---HH
Q 038516 417 CDNFALSGALSACADLAILKQGEMIHSQAEKTGHG-V-EMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPD-LK---CW 488 (708)
Q Consensus 417 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~ 488 (708)
.....+......+...|+++.|...++.+...... | ....+..+..++.+.|++++|...++++. .|+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34556677777888999999999999998775421 1 12466778889999999999999999985 232 22 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHH
Q 038516 489 NALLGGYSHY--------GMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYS 559 (708)
Q Consensus 489 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 559 (708)
..+..++... |++++|.+.|+++... .|+... ...+..... .... . .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence 5566666654 7899999999999985 565432 222211100 0000 0 01122
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 560 CMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
.+...|.+.|++++|...++++ |..+.....+..++.++...|+.++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4667889999999999998887 333234678889999999999999999988887766553
No 121
>PLN02789 farnesyltranstransferase
Probab=98.52 E-value=3.9e-05 Score=74.76 Aligned_cols=198 Identities=13% Similarity=0.038 Sum_probs=132.8
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC-CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCh--HHHHHH
Q 038516 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG-DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMA--EEAFMV 507 (708)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~ 507 (708)
..++|..+...+.+.+ +-+..+++.-..++...| .+++++..++.+. +.+..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3444444444444432 122233333334444555 5678888887764 34556677665556666653 677888
Q ss_pred HHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc---CCH----HHHHHHHH
Q 038516 508 FEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA---GLL----DEAENLIA 579 (708)
Q Consensus 508 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~ 579 (708)
++++++. .| |...|.....++...|+++++++.++++++.+. -+...|+....++.+. |.+ +++.++..
T Consensus 131 ~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 8888875 44 567788877888888899999999999987432 2355566665555544 222 45677765
Q ss_pred hC-CCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 580 ES-PYSEIRIELWRTLLSTCVAK----RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 580 ~~-~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
++ ...|.+...|..+.+.+... ++..+|...+.++++.+|+++.++..|+++|.+.
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 54 44545778899998888773 4456798999999999999999999999999874
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.50 E-value=0.00011 Score=72.06 Aligned_cols=178 Identities=16% Similarity=0.065 Sum_probs=129.0
Q ss_pred CCHHHHHHHHhhCC------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 038516 468 GDLRAAESIFSQVL------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKI 541 (708)
Q Consensus 468 g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 541 (708)
.++.++...-+.++ .|+...+...+.+......-..+..++-+-.+.+ . ...-|..-+ .+...|++++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~-~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG-G-LAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc-c-hHHHHHHHH-HHHHhcccchHHH
Confidence 35566666666664 3555666666665444333333333332222211 1 112233322 4556789999999
Q ss_pred HHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 542 LWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 542 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
.++.++. -.|+ +.......+.+.+.++.++|.+.++++....|+ ...+..+..++.+.|+.++|+..+++...-+|
T Consensus 328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 9999887 3454 556667789999999999999999998444455 77888899999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 620 EDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
+++..|..|+.+|..+|+..+|.....+...
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999988776644
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.46 E-value=4.3e-05 Score=82.29 Aligned_cols=130 Identities=11% Similarity=0.082 Sum_probs=107.0
Q ss_pred CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HH
Q 038516 449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FL 524 (708)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 524 (708)
....+...+-.|.....+.|.+++|..+++... .| +...+..++..+.+.+++++|+..+++..+. .|+..+ ..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence 345567888888999999999999999999885 34 5667778889999999999999999999985 676555 55
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 525 SLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 525 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
.+..++.+.|++++|..+|+++... ..-+...+..+..++...|+.++|...|+++
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5556888999999999999999872 2233677888899999999999999999887
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.44 E-value=2.4e-07 Score=55.84 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=24.4
Q ss_pred CCCCchhHHhHHHHHhHhCCChhHHHHHhccCC
Q 038516 145 GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG 177 (708)
Q Consensus 145 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 177 (708)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777763
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=2.8e-07 Score=55.52 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=29.1
Q ss_pred cCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCC
Q 038516 39 NHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIP 75 (708)
Q Consensus 39 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 75 (708)
|+. ||..+||.||++|++.|++++|.++|++|+
T Consensus 2 G~~----Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCE----PDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCC----CcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566 899999999999999999999999999885
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=2.4e-05 Score=77.98 Aligned_cols=214 Identities=15% Similarity=0.123 Sum_probs=126.0
Q ss_pred cCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHH
Q 038516 329 SALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIK 405 (708)
Q Consensus 329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~ 405 (708)
.+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+- |..+.-.|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34556666666666666554 556677777777777777777777777766654 33445556666777777777777
Q ss_pred HHHHHhHCCCc-----c---CHHHHHHHHHHHhCcccHHHHHHHHH-HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHH
Q 038516 406 LFCKMCREGLK-----C---DNFALSGALSACADLAILKQGEMIHS-QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESI 476 (708)
Q Consensus 406 ~~~~m~~~g~~-----p---~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 476 (708)
.|+..+....+ + +..+-.. ........+....++|- .....+..+|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 77776543210 0 0000000 01111222233333333 333444446667777777777777777777777
Q ss_pred HhhCC--C-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhh
Q 038516 477 FSQVL--H-PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMK 547 (708)
Q Consensus 477 ~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 547 (708)
|+..+ + .|...||-|...++...+.++|+.-|+++++ ++|+.+ ....|.-+|...|.+++|.+.|-..+
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 77664 2 3566777777777777777777777777777 466643 23334446667777777766665544
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00018 Score=64.72 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=52.9
Q ss_pred HHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcH
Q 038516 461 VDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH----SGLV 536 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~ 536 (708)
...|+..|++++|.+.......-+... .=...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 344556666666666655522111111 1122334444555566666666551 134444444444332 2334
Q ss_pred HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
.+|.-+|++|-+ +..|+..+.+..+.+....|++++|..+++.+
T Consensus 190 qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 190 QDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 455555555443 23444444444444444455555555554444
No 128
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.3e-05 Score=72.82 Aligned_cols=197 Identities=11% Similarity=0.045 Sum_probs=154.6
Q ss_pred HHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhc
Q 038516 457 CGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL-LSACSH 532 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~ 532 (708)
+++.+..+.+..++++|++++..-.+ .+....+.|..+|....++..|...++++.. ..|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 34555556677888888888876542 3666778888889999999999999999988 47776666543 347778
Q ss_pred cCcHHHHHHHHHHhhHCCCCcChH--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516 533 SGLVERGKILWNQMKEHSLIPGHK--HYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQA 610 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 610 (708)
.+.+.+|+.+...|.+. |... +.-.=.......+++.-+..++++.|.. .+.......+....+.|+++.|++-
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHH
Confidence 89999999998888652 2211 1111122344678889999999999866 5777777777777889999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCce
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGL 659 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 659 (708)
|+.+++...-++..-..++-++.+.|+++.|.+...++..+|++..|..
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 9999999988888888999999999999999999999999999988854
No 129
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.7e-05 Score=75.61 Aligned_cols=166 Identities=17% Similarity=0.094 Sum_probs=113.0
Q ss_pred HhhHhcCCHHHHHHHHhhCCCCChH-HHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 038516 462 DMYAKNGDLRAAESIFSQVLHPDLK-CWNALLG--GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVER 538 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 538 (708)
.++.-.|++++|.+.--.+.+-|.. .+..+++ ++...++.+.|...|++.+. +.|+...-...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~----------~ 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSAS----------M 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHh----------h
Confidence 4455667777777766555543322 2222222 34456777888888888777 456644322211 1
Q ss_pred HHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516 539 GKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSE-----IRIELWRTLLSTCVAKRNSRMVIQAAEQ 613 (708)
Q Consensus 539 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 613 (708)
-.+.++.+... ++-..+.|++.+|.+.|.+..... ++..+|........+.|+.++|+.-.+.
T Consensus 245 ~~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 245 MPKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hHHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 11222333332 255678999999999998872222 3455566666677789999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 614 VLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 614 ~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++.++|.-..+|...++++...++|++|.+.+++..+.
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999988664
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.36 E-value=3.4e-06 Score=77.21 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=44.1
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMV 607 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a 607 (708)
+.+.+++++|+..|.+.++ +.|+ ...|..=..+|.+.|.++.|.+-.+.+. ..+.....|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3444555555555555554 3443 3333334445555555555555444442 2211234455555555555555555
Q ss_pred HHHHHHHHhcCCCCcc
Q 038516 608 IQAAEQVLRLDPEDGT 623 (708)
Q Consensus 608 ~~~~~~~~~~~p~~~~ 623 (708)
++.|+++++++|++..
T Consensus 169 ~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 169 IEAYKKALELDPDNES 184 (304)
T ss_pred HHHHHhhhccCCCcHH
Confidence 5555555555555544
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=9.2e-06 Score=80.57 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=103.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhc
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAK 601 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 601 (708)
...|+..+...++++.|..+++++.+.. |+. ...++..+...++-.+|.+++++... .+.+...+......|...
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4456667777889999999999998743 553 44588888888999999999988733 324677788888889999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
++++.|..++++++++.|++...|..|+.+|...|++++|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999998888763
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.33 E-value=0.0059 Score=64.77 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCcc
Q 038516 591 WRTLLSTCVAKRNS---RMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGK 655 (708)
Q Consensus 591 ~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 655 (708)
.+.++..|++.+|. -+|+-+++..+..+|.|...-..|..+|.-.|-+..|.++++.+--+++..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence 45666778887764 478888899999999999999999999999999999999999886555543
No 133
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00037 Score=62.84 Aligned_cols=150 Identities=13% Similarity=-0.016 Sum_probs=116.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH----h
Q 038516 492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS----R 567 (708)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~ 567 (708)
...|+..|++++|++...... +......=...+.+..+++-|.+.+++|.+- .+..+.+.|+.++. -
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 456889999999999887722 2222333334566788899999999999862 23455665655554 4
Q ss_pred cCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH-HHH
Q 038516 568 AGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA-KMR 645 (708)
Q Consensus 568 ~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~-~~~ 645 (708)
.++..+|.-+|+++.. .+|++.+.+..+.++...|++++|+.+++.++..+|+++.++..+.-+-...|+-.++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 5579999999999965 55889999999999999999999999999999999999999999988888889887764 456
Q ss_pred HHHhc
Q 038516 646 RKMKG 650 (708)
Q Consensus 646 ~~~~~ 650 (708)
.+++.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 66654
No 134
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.29 E-value=1.3e-05 Score=80.20 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516 562 VSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC 640 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 640 (708)
+..+...|++++|++.++++ ...+.+...|..+..++...|++++|+..++++++++|+++.+|..+|.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45566677777777777776 33323566677777777777888888888888888888877778788888888888888
Q ss_pred HHHHHHHHhcC
Q 038516 641 VAKMRRKMKGS 651 (708)
Q Consensus 641 A~~~~~~~~~~ 651 (708)
|+..++++.+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 88877776653
No 135
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=0.00017 Score=79.21 Aligned_cols=240 Identities=14% Similarity=0.126 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHh-CCC---CChhhHHHHHHhcccCCChHHHH
Q 038516 197 MKEGLSLFGAMVGSGVNPT-QFSYSMLLNACSRMGNFVCGKVIHARVIIS-NTQ---VDLPLENALLDMYSKCSDTQTAF 271 (708)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~ 271 (708)
++.|.++.+..+. .|| ...|..-|....+.++++.|+++.++++.. ++. -...+|.++++.-...|.-+...
T Consensus 1441 pesaeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 3344454444443 454 455777888888999999999999998865 211 12357888888888889999999
Q ss_pred HHHhccCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCC
Q 038516 272 SVFTRIEN--PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGY 349 (708)
Q Consensus 272 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 349 (708)
++|+++.+ .....|..|...|.+.+.+++|.++|+.|.++ ..-....|...+..+.+..+-+.|..++...++.-.
T Consensus 1518 kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1518 KVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 99999987 33456889999999999999999999999997 446777888889999999999999999998877532
Q ss_pred C-CchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH--HHH
Q 038516 350 D-SSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF--ALS 423 (708)
Q Consensus 350 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~ 423 (708)
. -...+..-.+..-.+.|+.+.++.+|+..... -...|+..|..-.++|+.+.+..+|++.+..++.|-.. .|.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 2 24555666777788999999999999988753 56789999999999999999999999999998887653 445
Q ss_pred HHHHHHhCcccHHHHHHH
Q 038516 424 GALSACADLAILKQGEMI 441 (708)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~ 441 (708)
..|..-.+.|+-+.++.+
T Consensus 1676 kwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HHHHHHHhcCchhhHHHH
Confidence 555544444554444443
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.27 E-value=0.00017 Score=78.51 Aligned_cols=149 Identities=12% Similarity=0.162 Sum_probs=88.5
Q ss_pred hHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 038516 455 SVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACS 531 (708)
Q Consensus 455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 531 (708)
..+..+..+|-+.|+.++|..++++++ ..|+.+.|.+...|... +.++|.+++.+.+.. +.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 355566667777777777777777664 24566667777777766 777777777766653 44
Q ss_pred ccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516 532 HSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQA 610 (708)
Q Consensus 532 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 610 (708)
..+++..+.++|+++... .|+ ...+..+.+..... .... --...+..+...|...++++.+..+
T Consensus 181 ~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~------------~~~~-~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH------------REFT-RLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred hhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhh------------hccc-hhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 455666666666666652 222 22221111111111 0111 2234455555666677778888888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHh
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
++.+++.+|+|..+..-++..|..
T Consensus 246 LK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 246 LKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHH
Confidence 888888888877777777776653
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00014 Score=64.91 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=79.0
Q ss_pred HHHHHHhhHhcCCHHHHHHHHhhCCC--CChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 038516 457 CGSLVDMYAKNGDLRAAESIFSQVLH--PDLK-CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS 533 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 533 (708)
|..+.-+..-.|+.+-|...++.+.. |... .-..-...+-..|++++|+++++.+++.. +.|.+++.-=+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 33444444455666666655555421 2111 11111112334456666666666666543 22444444444444444
Q ss_pred CcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 038516 534 GLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR---NSRMVIQ 609 (708)
Q Consensus 534 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 609 (708)
|+.-+|++-+....+ .+..|.+.|.-+...|...|++++|.-.++++ ...|.++..+..+...+...| +.+.|..
T Consensus 134 GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 544455554444444 34445566666666666666666666666655 222223444444444433222 4555666
Q ss_pred HHHHHHhcCCCCc
Q 038516 610 AAEQVLRLDPEDG 622 (708)
Q Consensus 610 ~~~~~~~~~p~~~ 622 (708)
+|.+++++.|.+.
T Consensus 213 yy~~alkl~~~~~ 225 (289)
T KOG3060|consen 213 YYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHhChHhH
Confidence 6666666666443
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.22 E-value=8.8e-05 Score=63.75 Aligned_cols=114 Identities=17% Similarity=0.127 Sum_probs=52.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCH
Q 038516 498 YGMAEEAFMVFEVILEHGLRPDE----ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 498 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 571 (708)
.++...+...++.+... .|+. .....+...+...|++++|...|+........|. ....-.|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 55666666666666654 2222 1122233345555666666666666555432221 11222345555555666
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516 572 DEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ 613 (708)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 613 (708)
++|+..++..+..+..+..+...+..+...|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666655555433222333333333444444444444444443
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=4.2e-05 Score=65.11 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=89.1
Q ss_pred HHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038516 507 VFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYS 584 (708)
Q Consensus 507 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 584 (708)
.++++.. ..|+. .....+...+...|++++|.+.++.+...+ +.+...+..++..+...|++++|...+++. ...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555555 35543 445566667888899999999998887732 235677888889999999999999988887 334
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 585 EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 585 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
+.+...+..+...+...|+.+.|...++++++++|++...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 3567788888888999999999999999999999988764
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00066 Score=60.78 Aligned_cols=163 Identities=12% Similarity=0.082 Sum_probs=108.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH-HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH
Q 038516 488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS-ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS 566 (708)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (708)
|..++-+....|+.+.|...++++... + |...-...+=. -+...|++++|+++++.+.+.+ +-|..++---+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 444555666777888888888887776 3 54433222222 3455678888888888887744 234555555555666
Q ss_pred hcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHH
Q 038516 567 RAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG---RWDCVA 642 (708)
Q Consensus 567 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~eA~ 642 (708)
..|+.-+|++-+..... -..|.+.|..+...|...|+++.|.-.+++++=++|-++..+..++++++..| ++.-|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 67776677766555411 11577888888888888888888888888888888888888888888877766 444566
Q ss_pred HHHHHHhcCCC
Q 038516 643 KMRRKMKGSML 653 (708)
Q Consensus 643 ~~~~~~~~~~~ 653 (708)
+++.+..+...
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 66666655444
No 141
>PRK15331 chaperone protein SicA; Provisional
Probab=98.21 E-value=4.5e-05 Score=64.17 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516 559 SCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR 637 (708)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 637 (708)
-..+.-+...|++++|..+|+-+ ...+-+...|..|..+|...+++++|...|..+.-++++|+.+..+.|.+|...|+
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34556677899999999999887 33335788899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhc
Q 038516 638 WDCVAKMRRKMKG 650 (708)
Q Consensus 638 ~~eA~~~~~~~~~ 650 (708)
.++|+..|.....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999997765
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.0094 Score=59.58 Aligned_cols=122 Identities=22% Similarity=0.251 Sum_probs=59.5
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHH
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSA 529 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~ 529 (708)
+|..+++...+..-+..|+.+|.+..+ -++...++++.-||. ++..-|.++|+--+.. -+|... ....+.-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHH
Confidence 344445555555555555555555421 144445555554443 4555555555544442 223222 2334444
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAE 580 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (708)
+...++-..+..+|++....++.|+ ...|..+++-=..-|+++.+.++-++
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4555555555555555555444433 34455555555555555555555444
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=5e-05 Score=65.25 Aligned_cols=124 Identities=14% Similarity=0.088 Sum_probs=91.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCC-CC-cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCH----HHHHHHHH
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHS-LI-PGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRI----ELWRTLLS 596 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~ 596 (708)
|..++..+ ..++...+...++.+.+.. -. ......-.+...+...|++++|...|+.+....|++ .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 4788888988899998752 11 123344456788999999999999999984443443 24555677
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
.+...|++++|+..++.. .-.+-.+..+..+|++|...|++++|+..+++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999763 334445667889999999999999999999864
No 144
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.18 E-value=3.6e-05 Score=63.85 Aligned_cols=95 Identities=13% Similarity=-0.003 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED---GTTHILLS 629 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 629 (708)
++..++..+.+.|++++|.+.++.+....|+ ...+..++.++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445666677777777777777666221122 3455556666777777777777777777777664 34567777
Q ss_pred HHHHhcCCchHHHHHHHHHhcC
Q 038516 630 NLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 630 ~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.++...|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777777654
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.16 E-value=4.7e-06 Score=61.03 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHhc
Q 038516 587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG-RWDCVAKMRRKMKG 650 (708)
Q Consensus 587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~ 650 (708)
++..|..++..+...|++++|+..++++++++|+++.+|..+|.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999999998765
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=3.7e-05 Score=60.67 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG 636 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 636 (708)
+..++..+...|++++|...++++. ..+.+...+..+...+...++.+.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4557778888999999999998873 332345677778888888999999999999999999999988999999999999
Q ss_pred CchHHHHHHHHHhcC
Q 038516 637 RWDCVAKMRRKMKGS 651 (708)
Q Consensus 637 ~~~eA~~~~~~~~~~ 651 (708)
++++|...+....+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999877653
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.00012 Score=72.82 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=104.8
Q ss_pred hHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc
Q 038516 455 SVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHS 533 (708)
Q Consensus 455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 533 (708)
.....|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|++++++.+.. .| |...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 344567777778899999999999998666666677888888889999999999999975 44 445555556678899
Q ss_pred CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 038516 534 GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYS 584 (708)
Q Consensus 534 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (708)
++++.|+++.+++.+ ..|+ ..+|..|+.+|...|++++|+..+..+|..
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999997 6675 679999999999999999999999999755
No 148
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=2e-05 Score=72.96 Aligned_cols=107 Identities=13% Similarity=0.064 Sum_probs=91.8
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 553 PGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA---KRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
-|...|..|+..|.+.|++..|..-|..+ ...++++.++..+..++.. ..+..++..++++++.++|.+..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 35788999999999999999999999887 5555788888888887544 2367889999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCccCCce
Q 038516 629 SNLYAATGRWDCVAKMRRKMKGSMLGKEPGL 659 (708)
Q Consensus 629 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 659 (708)
+..++.+|++.+|...|+.|.+....-.|+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 9999999999999999999998876554443
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=3.4e-05 Score=70.81 Aligned_cols=101 Identities=17% Similarity=0.120 Sum_probs=83.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCC
Q 038516 493 GGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGL 570 (708)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 570 (708)
.-+.+.+++.+|+..|.++++ +.| |.+-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence 457788999999999999999 566 566677778899999999999999988887 6676 6789999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 038516 571 LDEAENLIAESPYSEIRIELWRTLLST 597 (708)
Q Consensus 571 ~~~A~~~~~~~~~~~~~~~~~~~l~~~ 597 (708)
+++|.+.|+++....|+..+|..-+..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999985555776665544433
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.03 E-value=3.2e-06 Score=64.73 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516 568 AGLLDEAENLIAESPYSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM 644 (708)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 644 (708)
.|++++|+.+++++....| +...|-.++.++.+.|++++|..++++ .+.+|.+......+|.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4666777776666611112 344555567777777777777777777 667777777777778888888888888888
Q ss_pred HHH
Q 038516 645 RRK 647 (708)
Q Consensus 645 ~~~ 647 (708)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.02 E-value=1.2e-05 Score=57.99 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=48.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++..+...|++++|+..++++++.+|+++.++..++.++..+|++++|...++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778888999999999999999998888999999999999999999888887654
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.3e-05 Score=49.20 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCc
Q 038516 80 VSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNG 115 (708)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 115 (708)
.+||++|.+|++.|+ +++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~-~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGR-VEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCCC
Confidence 378999999999998 99999999999998888873
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.1e-05 Score=49.58 Aligned_cols=35 Identities=34% Similarity=0.643 Sum_probs=30.4
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc
Q 038516 182 VAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ 216 (708)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 216 (708)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999998888874
No 154
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.98 E-value=2e-05 Score=57.44 Aligned_cols=53 Identities=17% Similarity=0.391 Sum_probs=47.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
...|++++|+..++++++.+|++..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999877654
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.96 E-value=0.00011 Score=60.87 Aligned_cols=103 Identities=7% Similarity=-0.037 Sum_probs=65.6
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCC--CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHH
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHS--LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLS 596 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~ 596 (708)
+..+...+...|++++|.+.|+.+.+.. .......+..++.++.+.|++++|...++++....| ....+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344445555666666666666665431 011123455567777777777777777776622112 2456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
++...|+.+.|...++++++..|++....
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 78888888888888888888888876543
No 156
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6.2e-05 Score=72.31 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCe
Q 038516 588 IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNN 667 (708)
Q Consensus 588 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (708)
..++..+..++.+.+++..|+....++++++|+|.-++..-|.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---------------- 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL---------------- 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence 3456777888889999999999999999999999999999999999999999999999999874
Q ss_pred EEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhh
Q 038516 668 VHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVT 700 (708)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 700 (708)
.|.+.+|..+|..+++++++.+.
T Consensus 321 ----------~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 321 ----------EPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999988743
No 157
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.91 E-value=0.032 Score=55.94 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=49.1
Q ss_pred CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHH
Q 038516 215 TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIA 290 (708)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~ 290 (708)
|..+|..||+-+... ..+++++.+++++.. .+.....|...+..-.+..+++..+++|.+-.. -++..|...+.
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 667777777766555 777777777777654 344556677777777777777777777776543 45555555544
No 158
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.91 E-value=0.005 Score=67.49 Aligned_cols=85 Identities=14% Similarity=0.107 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 038516 421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGM 500 (708)
Q Consensus 421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 500 (708)
.+..+..+|.+.|+.+++..+++.+.+.. +.++.+.|.+...|... ++++|.+++.+. +..|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44455556666666666666666666655 55677777777777777 888888777553 334666677
Q ss_pred hHHHHHHHHHHHHCCCCCCh
Q 038516 501 AEEAFMVFEVILEHGLRPDE 520 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~~p~~ 520 (708)
+..+.++|.++... .|+.
T Consensus 185 ~~~~~e~W~k~~~~--~~~d 202 (906)
T PRK14720 185 YVGIEEIWSKLVHY--NSDD 202 (906)
T ss_pred chHHHHHHHHHHhc--Cccc
Confidence 78888888888774 4443
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.3e-05 Score=47.69 Aligned_cols=33 Identities=30% Similarity=0.611 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP 518 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 518 (708)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888888776
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=2.3e-05 Score=47.72 Aligned_cols=33 Identities=30% Similarity=0.574 Sum_probs=25.4
Q ss_pred ccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC
Q 038516 80 VSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRP 113 (708)
Q Consensus 80 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 113 (708)
.+||.+|.+|++.|+ ++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~-~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGD-PDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 467777777777777 777777777777777766
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.88 E-value=4.5e-05 Score=56.53 Aligned_cols=59 Identities=14% Similarity=0.177 Sum_probs=52.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
...+...++++.|...++++++++|+++..+..+|.+|...|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34677899999999999999999999999999999999999999999999998876543
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.84 E-value=0.00018 Score=63.69 Aligned_cols=94 Identities=11% Similarity=-0.047 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESP-YS-EI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
...+..++..+...|++++|...++++. .. .+ ...+|..+...+...|+.++|...+++++.++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556777788888899999999888872 11 11 23578888889999999999999999999999999998888888
Q ss_pred HHH-------hcCCchHHHHHHHHH
Q 038516 631 LYA-------ATGRWDCVAKMRRKM 648 (708)
Q Consensus 631 ~~~-------~~g~~~eA~~~~~~~ 648 (708)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666655543
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.81 E-value=6.5e-05 Score=54.07 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 561 MVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
++..+...|++++|.+.++++....| +...|..++.++...|++++|...++++++.+|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56778899999999999999833334 678899999999999999999999999999999875
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00033 Score=70.11 Aligned_cols=105 Identities=14% Similarity=0.082 Sum_probs=74.8
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
.+...|++++|++.|+++++ ..| +...|..++.+|...|++++|+..++++ ...+.+...|..++.+|...|+++.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 44556677777777777765 333 2455666777777788888888877777 3332456677777888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 607 VIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
|+..++++++++|+++.+...+..+....
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888888777776664444
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.00019 Score=63.78 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESPY---SEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
...+..++..+...|++++|...++++.. .++ ....+..++..+...|+++.|...++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 33456666777777777777777776621 111 14567777888888899999999999999999988888888888
Q ss_pred HHHhcCC--------------chHHHHHHHHHhc
Q 038516 631 LYAATGR--------------WDCVAKMRRKMKG 650 (708)
Q Consensus 631 ~~~~~g~--------------~~eA~~~~~~~~~ 650 (708)
+|...|+ +++|.+.+++..+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 8888776 4556666655544
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0011 Score=69.50 Aligned_cols=139 Identities=16% Similarity=0.050 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc--------CcHHHHHHHHHHhh
Q 038516 482 HPDLKCWNALLGGYSH--YG---MAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHS--------GLVERGKILWNQMK 547 (708)
Q Consensus 482 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~ 547 (708)
..|...|...+++... .+ +...|..+|+++++ ..|+. ..+..+..++... .+...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4566777777766433 22 36688888999888 47764 3333332222111 11122222222222
Q ss_pred HC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 548 EH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 548 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
.. ....+...|..+.-.....|++++|...++++....|+...|..++..+...|+.++|...+++++.++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 11 1111223344343333344444444444444422223444444444444444444444444444444444444
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.74 E-value=0.0011 Score=69.34 Aligned_cols=135 Identities=13% Similarity=0.069 Sum_probs=99.8
Q ss_pred CCCChHHHHHHHHHHhc--c---CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc--------CCHHHHHHHHHhC
Q 038516 516 LRPDEITFLSLLSACSH--S---GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA--------GLLDEAENLIAES 581 (708)
Q Consensus 516 ~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 581 (708)
.+.|...|...+.+... . +....|..+|++.++ ..|+ ...|..+..++... ++++.+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 45677888888886433 2 347799999999998 6676 44555554444322 2234555555553
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 582 ---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 582 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+..+.++..+..+.-.....|++++|...++++++++| +...|..+|.+|...|+.++|.+.++++....+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 22334667777777777778999999999999999999 477899999999999999999999998876544
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.74 E-value=0.00099 Score=59.22 Aligned_cols=129 Identities=18% Similarity=0.149 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHH
Q 038516 485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCM 561 (708)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 561 (708)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+ ..|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 44566677777778888888888888776432222 24566666677777777777777777776 3332 4455556
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516 562 VSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR 637 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 637 (708)
+.++...|+...+..-++.+ ...+++|.+.++++++.+|++ +..++..+...|+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A-------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA-------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH-------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 66666666655544332221 123677888999999999987 4444444444443
No 169
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.70 E-value=0.028 Score=53.91 Aligned_cols=210 Identities=14% Similarity=0.075 Sum_probs=132.9
Q ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC-----CCCChHH--HHHHHHHH---HhcCC
Q 038516 431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV-----LHPDLKC--WNALLGGY---SHYGM 500 (708)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~--~~~li~~~---~~~g~ 500 (708)
+.|..+.|.++-+..-..- +.-.....+.+...+..|+++.|+++++.- +.+++.- --.|+.+- .-.-+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4455555555544443322 112334456666677777777777777643 2333321 11122211 11235
Q ss_pred hHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 501 AEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIA 579 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 579 (708)
...|...-.+..+ +.||... -..-..++.+.|+..++-.+++.+-+. .|.+..+. ...+.+.|+. ++.-++
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~--lY~~ar~gdt--a~dRlk 316 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIAL--LYVRARSGDT--ALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHH--HHHHhcCCCc--HHHHHH
Confidence 6667776666666 6888654 344455899999999999999999984 45444432 2334556653 333333
Q ss_pred hC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHhc
Q 038516 580 ES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT-GRWDCVAKMRRKMKG 650 (708)
Q Consensus 580 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~ 650 (708)
+. ..++.+.+....+..+....|++-.|....+.+....|.. ++|..|+++-... |+-.+++..+.+..+
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 22 3343466777777778888999999999999999999975 5688888887766 999999988877654
No 170
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.70 E-value=2.5e-05 Score=46.99 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVA 642 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 642 (708)
++++++++|+++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999996
No 171
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.70 E-value=0.11 Score=55.63 Aligned_cols=159 Identities=16% Similarity=0.071 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516 487 CWNALLGGYSHYGMAE---EAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV 562 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 562 (708)
+-+.|+..+.+.++.. +|+-+++.-... .| |..+-..++..|+-.|-+..|.++|+.+--+.+.-|..-|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence 4567788888888765 455566665553 34 45555667888888899999999999886655655544332 33
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcC
Q 038516 563 SLLSRAGLLDEAENLIAESP-YSE-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE----DGTTHILLSNLYAATG 636 (708)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 636 (708)
..+...|++..+...++... .-. .-.++-..+..+| +.|.+.+-.++..---++.-. -..+-......+...+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55667788888777776651 110 1122222233333 455555544442211111111 1111234555666777
Q ss_pred CchHHHHHHHHHh
Q 038516 637 RWDCVAKMRRKMK 649 (708)
Q Consensus 637 ~~~eA~~~~~~~~ 649 (708)
+.++-.+....|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8777777776664
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.64 E-value=0.0092 Score=50.90 Aligned_cols=145 Identities=12% Similarity=-0.008 Sum_probs=104.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 038516 499 GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLI 578 (708)
Q Consensus 499 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 578 (708)
=|++...+-..+-.+ ..|....-..|..++...|+..+|...|++...--+--|....-.+.++....+++.+|...+
T Consensus 70 ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL 147 (251)
T COG4700 70 LDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL 147 (251)
T ss_pred cChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344444443333333 467776777788888889999999999988877333345777777888888899999999888
Q ss_pred HhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516 579 AESPYSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 579 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
+++...+| ++.....+...+...|....|+..++.++.--|+. ......+..+.++|+.+||..-..
T Consensus 148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHH
Confidence 88733222 34555667778888999999999999999888864 346667778889998888865443
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.59 E-value=0.0013 Score=62.18 Aligned_cols=94 Identities=10% Similarity=-0.015 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHH
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSN 630 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 630 (708)
|..-+..+.+.|++++|...|+......|+ +..+-.++..+...|+++.|...|+++++..|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445567777777766665221122 34566667777777777777777777777766643 34555677
Q ss_pred HHHhcCCchHHHHHHHHHhcC
Q 038516 631 LYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 631 ~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+|...|++++|..+++++.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777776653
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.58 E-value=0.00017 Score=55.02 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=42.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHH
Q 038516 498 YGMAEEAFMVFEVILEHGLR-PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAE 575 (708)
Q Consensus 498 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 575 (708)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..|+ ......++.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46666777777776664211 1223333455566666666666666666 21 2221 233334466666666666666
Q ss_pred HHHHh
Q 038516 576 NLIAE 580 (708)
Q Consensus 576 ~~~~~ 580 (708)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.09 Score=51.36 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=73.0
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGL 535 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 535 (708)
+.+..+.-+...|+...|.++-.+..-|+-.-|...+.+++..+++++-.++... . -.+.-|...+.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence 3444455566677777788777777777777788888888888888776654332 1 123567777777777777
Q ss_pred HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 536 VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 536 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
..+|..+..++. +..-+..|.++|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777777766621 233456677777777777665443
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0027 Score=61.26 Aligned_cols=136 Identities=13% Similarity=0.139 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA-CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL 564 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (708)
.+|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999998542 2233444443333 33356777799999998874 44456778888899
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 565 LSRAGLLDEAENLIAESPYSEIRI----ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
+...|+.+.|..+|++.-...+.. .+|...+..-...|+++....+.+++.+.-|++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999984333444 48999999999999999999999999999888655
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.00093 Score=54.18 Aligned_cols=88 Identities=16% Similarity=0.067 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 038516 561 MVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE---DGTTHILLSNLYA 633 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 633 (708)
+..++-..|+.++|..+|++...... ....+-.+...++..|++++|+.++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667777888888888777622111 1345666777788888888888888888887777 6666677777888
Q ss_pred hcCCchHHHHHHHHH
Q 038516 634 ATGRWDCVAKMRRKM 648 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~ 648 (708)
..|+++||.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 888888888776544
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.55 E-value=0.014 Score=59.44 Aligned_cols=183 Identities=14% Similarity=0.114 Sum_probs=101.1
Q ss_pred HHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH
Q 038516 341 HALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF 420 (708)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 420 (708)
++++.+.|-.|+... +...++-.|.+.+|-++|. +.|.-..|+++|.+|.--
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF------- 674 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF------- 674 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH-------
Confidence 455666666566543 4455666777777777764 355666677777666421
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 038516 421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGM 500 (708)
Q Consensus 421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 500 (708)
-..+-+...|..++-..+.+.-.+.. -+..--.+-..++...|+.++|..+. ..+|-
T Consensus 675 ---D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW 731 (1081)
T KOG1538|consen 675 ---DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW 731 (1081)
T ss_pred ---HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence 11222334444444444333222110 01111123345566677777777554 33344
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516 501 AEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAE 580 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (708)
.+-+.++-+++... +..+...+..-+.+...+.-|-++|.+|-+ ...+++.....++|.+|..+-++
T Consensus 732 ~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhh
Confidence 44455554444332 334444455555566667777788877754 34567778888888888888888
Q ss_pred CCCCCCC
Q 038516 581 SPYSEIR 587 (708)
Q Consensus 581 ~~~~~~~ 587 (708)
.|.-.|+
T Consensus 799 hPe~~~d 805 (1081)
T KOG1538|consen 799 HPEFKDD 805 (1081)
T ss_pred Ccccccc
Confidence 8655333
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0018 Score=57.35 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhcCCCC
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCV-------AKRNSR-------MVIQAAEQVLRLDPED 621 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~-------~~~~~~-------~a~~~~~~~~~~~p~~ 621 (708)
++..++.++...|++++|...++++.. .+.....+..+...+. ..|+++ +|...++++++.+|++
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 344444455555555555555544411 1112333333333333 444444 6666677777888865
Q ss_pred c
Q 038516 622 G 622 (708)
Q Consensus 622 ~ 622 (708)
.
T Consensus 154 ~ 154 (168)
T CHL00033 154 Y 154 (168)
T ss_pred H
Confidence 3
No 180
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.52 E-value=0.0012 Score=51.82 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
+..++..+...|++++|.+.+++. ...+.+...+..+...+...|+.+.|...++++++..|
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 334444455555555555555443 11112234455555555556666666666666655554
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00015 Score=42.85 Aligned_cols=29 Identities=24% Similarity=0.433 Sum_probs=18.1
Q ss_pred cHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 038516 81 SYNALIAAYSRDHDHAHLTFRLIDQMEFEC 110 (708)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g 110 (708)
+||.+|++|++.|+ +++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~-~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQ-FEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccch-HHHHHHHHHHHhHCc
Confidence 56666666666666 666666666666554
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.50 E-value=0.00013 Score=43.07 Aligned_cols=31 Identities=35% Similarity=0.611 Sum_probs=23.1
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHhCCC
Q 038516 182 VAWNSIILGNFKNDKMKEGLSLFGAMVGSGV 212 (708)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 212 (708)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777777653
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.50 E-value=0.006 Score=51.97 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=90.8
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Ccch
Q 038516 550 SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTT 624 (708)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~ 624 (708)
.+-|+...-..|...+.+.|++.||...|++. +.. .|+..+..+..+....++..+|...++++.+.+|. .+..
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 46688888888999999999999999999997 333 68889999999999999999999999999999886 4556
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516 625 HILLSNLYAATGRWDCVAKMRRKMKGSMLG 654 (708)
Q Consensus 625 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 654 (708)
...++++|..+|++.+|+..|+.+.+....
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 788999999999999999999988776443
No 184
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.47 E-value=0.00025 Score=51.77 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 038516 554 GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR-NSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 619 (708)
++..|..++..+...|++++|+..|+++ ...+.++..|..++.++...| ++++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566778888889999999999998887 333346778888888899998 79999999999999988
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.47 E-value=0.00013 Score=53.09 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 567 RAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
..|++++|.++++++ ...|.+..++..++.+|...|++++|...++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 345555555555554 12212444555555555555555555555555555555554443333
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.47 E-value=0.0058 Score=51.48 Aligned_cols=89 Identities=10% Similarity=-0.077 Sum_probs=51.6
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR 605 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 605 (708)
.-+...|++++|.++|+-+.. +.|. ..-|-.|+-++...|++++|+..|..+ ...+.++..+-.+..++...|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 344455666666666665554 3333 334445666666666666666666665 222245555666666666667777
Q ss_pred HHHHHHHHHHhcC
Q 038516 606 MVIQAAEQVLRLD 618 (708)
Q Consensus 606 ~a~~~~~~~~~~~ 618 (708)
.|++.|+.++...
T Consensus 121 ~A~~aF~~Ai~~~ 133 (157)
T PRK15363 121 YAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHh
Confidence 7777766666654
No 187
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.39 E-value=0.17 Score=49.97 Aligned_cols=61 Identities=11% Similarity=0.079 Sum_probs=53.3
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 587 RIELWRTLLST--CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 587 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
+.++-+.|..+ +..+|++.++.-...-+.+..| ++.+|..+|-++....+|+||..++..+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 45666666665 5679999999999999999999 8899999999999999999999999865
No 188
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.36 E-value=0.00033 Score=45.38 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
..|..+...+...|++++|++.++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999998888874
No 189
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.15 Score=52.89 Aligned_cols=152 Identities=13% Similarity=0.080 Sum_probs=89.3
Q ss_pred CCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHcCCCCccchHH
Q 038516 264 CSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPD----EYTFAAIISATSALPASAYGKP 339 (708)
Q Consensus 264 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~ 339 (708)
-|++++|.+++-.+.++|. .|..+.+.|+|-...++++. . |-..| ...++.+...++....++.|.+
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g-~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---G-GSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899888888877653 34555666777665555532 1 21122 2345566666666666666666
Q ss_pred HHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH
Q 038516 340 LHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN 419 (708)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 419 (708)
.+..-... ..++.++.+..++++.+.+-..+++ +....-.+...+...|.-++|.+.+-+. + .|
T Consensus 818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-- 881 (1189)
T KOG2041|consen 818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-- 881 (1189)
T ss_pred HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc--
Confidence 66542211 2356667776677766666665555 3344555667777777777777666432 1 11
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHH
Q 038516 420 FALSGALSACADLAILKQGEMIHS 443 (708)
Q Consensus 420 ~t~~~ll~~~~~~~~~~~a~~~~~ 443 (708)
...+..|...++|.+|.++-+
T Consensus 882 ---kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 882 ---KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH
Confidence 134556666777766666544
No 190
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.27 Score=51.17 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHhcCCChhHHHHH
Q 038516 129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-----DAVAWNSIILGNFKNDKMKEGLSL 203 (708)
Q Consensus 129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 203 (708)
|++++|++++-++-+.. ..|.++.+.|||-.+.++++.-... -..+|+.+...+.....+++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555443332 3455666777777777776653321 124677777777777777777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChh
Q 038516 204 FGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLV 283 (708)
Q Consensus 204 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 283 (708)
|..-.. -...+.++.+..++++-+.+-. .++.+....-.+.+++.+.|.-++|.+.|-+-..|.
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 765432 1223445554444444333322 246677777788888888888888877665554442
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHH
Q 038516 284 SWNSMIAGYMENGNGEKAVDMFVAL 308 (708)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m 308 (708)
+.+..|...++|.+|.++-+..
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhc
Confidence 2345556666676666665543
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.33 E-value=0.0054 Score=58.02 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=73.9
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHH
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG----HKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTL 594 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l 594 (708)
|...+....+.|++++|...|+.+++. .|+ ...+..++.+|...|++++|...|+++ |..+..+..+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444444445567888888888887763 232 245667888888999999998888777 3333346677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
+..+...|+.+.|...++++++..|++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 78888899999999999999999998764
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.33 E-value=0.00092 Score=66.16 Aligned_cols=66 Identities=15% Similarity=-0.015 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT---HILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.+...|..+..+|...|++++|+..++++++++|++..+ |.+++.+|..+|+.++|+..++++.+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456667777777777777777777777777777777643 777777777777777777777776653
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.33 E-value=0.037 Score=51.96 Aligned_cols=170 Identities=11% Similarity=0.081 Sum_probs=101.2
Q ss_pred HHhhHhcCCHHHHHHHHhhCCC--CChH-H---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhc
Q 038516 461 VDMYAKNGDLRAAESIFSQVLH--PDLK-C---WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSH 532 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 532 (708)
...+...|++++|.+.|+.+.. |+.. . .-.++.+|.+.+++++|...+++.++. .|+. ..+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3344567788888888877742 3221 1 234556777888888888888888874 4432 233333333321
Q ss_pred --c---------------Cc---HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHH
Q 038516 533 --S---------------GL---VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWR 592 (708)
Q Consensus 533 --~---------------~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 592 (708)
. .| ..+|...|+.++ +.|-...-..+|...+..+... . ..---
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~-l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR-L-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH-H-HHHHH
Confidence 0 11 122333333333 3333333344554444333211 0 00111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 593 TLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT---THILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
.+...|.+.|++..|..-++.+++.-|+.+. +...++.+|...|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455688899999999999999998887654 46678899999999999999887654
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.31 E-value=0.002 Score=61.80 Aligned_cols=128 Identities=11% Similarity=-0.007 Sum_probs=86.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhH----CCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHH
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKE----HSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIE 589 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~ 589 (708)
.|..|...|.-.|+++.|+...+.-.. -|-.. ....+..+.+++.-.|+++.|.+.|+.. ..+.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 355556666667888888876654322 13322 3556778888888889999888888764 22222344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLRL----D--PEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
.--+|...|....+++.|+.+..+-+.+ + -....++..|+++|...|..+.|..+.++-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5566777777777888888887765543 2 2234567788899999999998887766543
No 195
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.056 Score=52.47 Aligned_cols=148 Identities=9% Similarity=-0.003 Sum_probs=68.6
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCC
Q 038516 495 YSHYGMAEEAFMVFEVILEH---GLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGL 570 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 570 (708)
..+.|++..|.+.+.+.+.. .++|+...|.....+..+.|+.++|+.-.+...+ +.|+ ...|-.-+.++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666552 1222233344444455556666666655555543 2222 1122222334444555
Q ss_pred HHHHHHHHHhCCCCCCCHHH---H---------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch--------
Q 038516 571 LDEAENLIAESPYSEIRIEL---W---------------RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-------- 624 (708)
Q Consensus 571 ~~~A~~~~~~~~~~~~~~~~---~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------- 624 (708)
|++|.+-++++.....+..+ | -.++..-....+.+--...-..++...|+-...
T Consensus 337 ~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~k 416 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAK 416 (486)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHH
Confidence 66666665554111011111 1 111111122222223333334455556664332
Q ss_pred HHHHHHHHHhcCCchHHHHH
Q 038516 625 HILLSNLYAATGRWDCVAKM 644 (708)
Q Consensus 625 ~~~l~~~~~~~g~~~eA~~~ 644 (708)
+...+.+|...++..++.+.
T Consensus 417 FkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhc
Confidence 44677788888888877665
No 196
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.13 Score=50.33 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=17.9
Q ss_pred HHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHH
Q 038516 363 YFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECA 403 (708)
Q Consensus 363 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 403 (708)
+...|+...|.++..+..-++-..|-..+.+++..++|++-
T Consensus 187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL 227 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDEL 227 (319)
T ss_pred HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHH
Confidence 33344444444444444444444444444444444444443
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.25 E-value=0.0017 Score=50.37 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhCCC-CCCcchHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhhHH
Q 038516 185 NSIILGNFKNDKMKEGLSLFGAMVGSGV-NPTQFSYSMLLNACSRMG--------NFVCGKVIHARVIISNTQVDLPLEN 255 (708)
Q Consensus 185 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 255 (708)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999987643 2345667888888888899998888
Q ss_pred HHHHhccc
Q 038516 256 ALLDMYSK 263 (708)
Q Consensus 256 ~l~~~~~~ 263 (708)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88876643
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.24 E-value=0.0012 Score=48.85 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=54.1
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516 562 VSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL 627 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 627 (708)
...|.+.+++++|.++++++ ...|.++..|...+..+...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35688899999999999888 3333467778888888999999999999999999999988765443
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.20 E-value=0.005 Score=61.80 Aligned_cols=121 Identities=15% Similarity=0.065 Sum_probs=76.9
Q ss_pred CCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC----CCChH
Q 038516 413 EGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT--GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL----HPDLK 486 (708)
Q Consensus 413 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~ 486 (708)
.+.+.+...+..+++.+....+++.+..++-..... ....-+.+..++++.|.+.|..+.+..+++.=. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445666777777777777777777777776666543 222223344467777777777777777765542 36677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS 533 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 533 (708)
++|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777766666665555556655555555443
No 200
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.18 E-value=0.065 Score=52.02 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=58.3
Q ss_pred HHHHhhHhc-CCHHHHHHHHhhCC-----CCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----hH-H
Q 038516 459 SLVDMYAKN-GDLRAAESIFSQVL-----HPD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-----EI-T 522 (708)
Q Consensus 459 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-~ 522 (708)
.+...|... |+++.|.+.|++.. ... ..++..+...+.+.|++++|.++|++....-...+ .. .
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 344455555 66666666665552 111 22344555666667777777777776665422211 11 1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHC--CCCcC--hHHHHHHHHHHHhc--CCHHHHHHHHHhC
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEH--SLIPG--HKHYSCMVSLLSRA--GLLDEAENLIAES 581 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 581 (708)
|...+-++...||...|.+.+++.... ++..+ ......|+.++-.. ..+++|..-|+.+
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 222222445556666666666666543 22222 23344455555432 2445555555554
No 201
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.16 E-value=0.0091 Score=46.52 Aligned_cols=79 Identities=9% Similarity=0.148 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhccC--------cHHHHHHHHHHhhHCCCCcChHHHH
Q 038516 489 NALLGGYSHYGMAEEAFMVFEVILEHGL-RPDEITFLSLLSACSHSG--------LVERGKILWNQMKEHSLIPGHKHYS 559 (708)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~ 559 (708)
...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 899999999998765532 3556778899999889999999999
Q ss_pred HHHHHHHh
Q 038516 560 CMVSLLSR 567 (708)
Q Consensus 560 ~l~~~~~~ 567 (708)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887764
No 202
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.12 E-value=0.01 Score=59.58 Aligned_cols=113 Identities=11% Similarity=0.051 Sum_probs=82.6
Q ss_pred eehhhHHHHhcCCChHHHHHHHHHHhHC--CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHh
Q 038516 386 LWTEMIIGHSRMGDGECAIKLFCKMCRE--GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDM 463 (708)
Q Consensus 386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (708)
....++..+....+.+.+..++.+.... ....-..|..++++.|.+.|..+.+..++..-...|+-||..++|.|++.
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~ 147 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH 147 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence 3445566666667777888888877664 33344556678888888888888888888888888888899999999999
Q ss_pred hHhcCCHHHHHHHHhhCC----CCChHHHHHHHHHHHhc
Q 038516 464 YAKNGDLRAAESIFSQVL----HPDLKCWNALLGGYSHY 498 (708)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~ 498 (708)
+.+.|++..|.++...|. -.+..|+..-+.+|.+-
T Consensus 148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999988888887773 23445555444444443
No 203
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.11 E-value=0.012 Score=48.77 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHH
Q 038516 560 CMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT---HILLSNLY 632 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~ 632 (708)
.-+....+.|++++|.+.|+.+ |..+-....-..++.++...++++.|...+++.++++|.++.+ +...|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3455667889999999999887 4443456677888899999999999999999999999998764 45556566
Q ss_pred HhcCC---------------chHHHHHHHHHhcC
Q 038516 633 AATGR---------------WDCVAKMRRKMKGS 651 (708)
Q Consensus 633 ~~~g~---------------~~eA~~~~~~~~~~ 651 (708)
..+.. ..+|...|+.+.++
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 66654 66777777777654
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.10 E-value=0.13 Score=49.71 Aligned_cols=181 Identities=18% Similarity=0.154 Sum_probs=109.3
Q ss_pred cCCHHHHHHHHhhC---CCCChHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHH
Q 038516 467 NGDLRAAESIFSQV---LHPDLKCWNALLG--GYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGLVERG 539 (708)
Q Consensus 467 ~g~~~~A~~~~~~~---~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a 539 (708)
.|+-..|.++-.+. +..|....-.++. +-.-.|+++.|.+-|+.|.. .|.. .-+..|.-.-.+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 45555555554433 2233333333332 23345788888888888776 2322 1233333344566777777
Q ss_pred HHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCCHH--HHHHHHHH---HHhcCCHHHHHHH
Q 038516 540 KILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES---PYSEIRIE--LWRTLLST---CVAKRNSRMVIQA 610 (708)
Q Consensus 540 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~--~~~~l~~~---~~~~~~~~~a~~~ 610 (708)
.++-+.... .-|. .=.+...+...+..|+|+.|+++++.. ....++.. .-..|+.+ -....|...|...
T Consensus 174 r~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 174 RHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 777776664 3343 223555667777888888888887664 11112211 11222222 1224577888888
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
..++.++.|+-...-..-+.+|++.|+..++-.+++.+=+..
T Consensus 252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 888899999988888888889999999999998888876543
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.06 E-value=0.22 Score=51.28 Aligned_cols=75 Identities=9% Similarity=-0.043 Sum_probs=37.8
Q ss_pred HHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHH
Q 038516 324 IISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECA 403 (708)
Q Consensus 324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 403 (708)
+...+.+...+..|-++|..|-.. .+++..+...++|++|..+-+..++--...|-...+-++...++++|
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHH
Confidence 333334444444555555444322 24556666667777777766666654333344444444444444444
Q ss_pred HHHH
Q 038516 404 IKLF 407 (708)
Q Consensus 404 ~~~~ 407 (708)
.+.|
T Consensus 824 qkAf 827 (1081)
T KOG1538|consen 824 QKAF 827 (1081)
T ss_pred HHHH
Confidence 4433
No 206
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.0043 Score=53.46 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=71.7
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 562 VSLLSRAGLLDEAENLIAES----PYSE--IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
++-+...|++++|..-|..+ |... ....+|..-..+..+.+..+.|+..+.++++++|....++...+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 35577888899988888776 2110 12334444555677899999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcC
Q 038516 636 GRWDCVAKMRRKMKGS 651 (708)
Q Consensus 636 g~~~eA~~~~~~~~~~ 651 (708)
.++++|++-++++...
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999988775
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.018 Score=55.82 Aligned_cols=167 Identities=16% Similarity=0.187 Sum_probs=79.6
Q ss_pred hHHHHHHHhhHhcCCHHHHHHHHhhCC-------CC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCh-
Q 038516 455 SVCGSLVDMYAKNGDLRAAESIFSQVL-------HP--DLKCWNALLGGYSHYGMAEEAFMVFEVILE----HGLRPDE- 520 (708)
Q Consensus 455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~- 520 (708)
..|......|...|++++|.+.|.+.. .+ -...|......|.+. ++++|+..+++..+ .| .|+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 345555666666667766666665541 11 112344444444333 66666666666554 22 2222
Q ss_pred -HHHHHHHHHHhcc-CcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCC--C
Q 038516 521 -ITFLSLLSACSHS-GLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESP---YSEI--R 587 (708)
Q Consensus 521 -~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~--~ 587 (708)
..+..+...|... |++++|++.|++..+. + .+. ...+..++..+.+.|++++|.++|++.. ...+ .
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 2344455556555 6666666666665543 2 111 3344455566666666666666665541 1101 1
Q ss_pred HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 588 IEL---WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 588 ~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
..+ +-..+-++...||...|...+++....+|.-...
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 111 1111222334566666666666666666665554
No 208
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.03 E-value=0.13 Score=50.69 Aligned_cols=161 Identities=20% Similarity=0.127 Sum_probs=93.5
Q ss_pred HHHHhhHhcCCHHHHHHHHhhCCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516 459 SLVDMYAKNGDLRAAESIFSQVLHP-------DLKCWNALLGGYSH---YGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528 (708)
Q Consensus 459 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 528 (708)
.++-.|....+++..+++.+.+... ....-....-++-+ .|+.++|++++..+....-.++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566667777777777766432 11222233445555 6777788887777555545566666665555
Q ss_pred HHh----c-----cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCC-HH---HHHHHH---H-----h-CCCCCC
Q 038516 529 ACS----H-----SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGL-LD---EAENLI---A-----E-SPYSEI 586 (708)
Q Consensus 529 ~~~----~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~-----~-~~~~~~ 586 (708)
.|- . ....++|...|.+.-+ +.|+..+=-.++..+...|. .+ +..++. . + ......
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 432 1 2236677777776655 33543332233344444443 11 222222 1 1 111224
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
+...+.+++.++.-.||.++|.+.+++++.+.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 55566788889999999999999999999997764
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.02 Score=46.50 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=54.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC--cChHHHHHHHHHHH
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGLVERGKILWNQMKEHSLI--PGHKHYSCMVSLLS 566 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~ 566 (708)
+..++-..|+.++|+.+|++..+.|+.... ..+..+..++...|++++|..+++......-. -+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566677777788888877777665442 33555556677777777777777777653100 01222223445566
Q ss_pred hcCCHHHHHHHHHh
Q 038516 567 RAGLLDEAENLIAE 580 (708)
Q Consensus 567 ~~g~~~~A~~~~~~ 580 (708)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77777777766533
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.96 E-value=0.0061 Score=53.91 Aligned_cols=97 Identities=10% Similarity=0.174 Sum_probs=71.9
Q ss_pred HHHhhcC--CCCCcccHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccc------------
Q 038516 68 RQVFDEI--PKRSLVSYNALIAAYSRD-----HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLL------------ 128 (708)
Q Consensus 68 ~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------ 128 (708)
...|+.. ..++-.+|..++..|.+. |. .+-....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGH-VeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGH-VEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcCh-HHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 3455554 356667777777777654 44 666777788888888888888888888776432
Q ss_pred ----cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCC
Q 038516 129 ----EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD 165 (708)
Q Consensus 129 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 165 (708)
.+-+.|.+++++|...|+-||..++..|++.+.+.+.
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2445678899999999999999999999988877654
No 211
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.92 E-value=0.0084 Score=47.74 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCC
Q 038516 563 SLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT----THILLSNLYAATGR 637 (708)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~ 637 (708)
-++...|+++.|++.|.+. ..-|.++..|+.-..+++-.|+.++|..-+.+++++..+... .|...+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567888899999888876 223246788899999999999999999999999998655433 37788889999999
Q ss_pred chHHHHHHHHHhcCCC
Q 038516 638 WDCVAKMRRKMKGSML 653 (708)
Q Consensus 638 ~~eA~~~~~~~~~~~~ 653 (708)
.+.|+.-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988876653
No 212
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.011 Score=50.99 Aligned_cols=105 Identities=16% Similarity=0.224 Sum_probs=70.8
Q ss_pred hccCcHHHHHHHHHHhhHC--C-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516 531 SHSGLVERGKILWNQMKEH--S-LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMV 607 (708)
Q Consensus 531 ~~~~~~~~a~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 607 (708)
...++.+.+...++++... | +-|+... ..........++.. -...+..++..+...|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~-----~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL-----YLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH-----HHHHHHHHHHHHHHTT-HHHH
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccCHHHH
Confidence 4456777777777777654 2 2222111 11222222233222 123556677778889999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 608 IQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
...+++++..+|-+...|..+..+|...|+..+|.++++++++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988754
No 213
>PRK11906 transcriptional regulator; Provisional
Probab=96.90 E-value=0.018 Score=57.36 Aligned_cols=145 Identities=9% Similarity=0.075 Sum_probs=92.4
Q ss_pred ChHHHHHHHHHHHH-CCCCCCh-HHHHHHHHHHhc---------cCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHh
Q 038516 500 MAEEAFMVFEVILE-HGLRPDE-ITFLSLLSACSH---------SGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSR 567 (708)
Q Consensus 500 ~~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 567 (708)
..+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.+.-++..+ +.| |+.....++.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 45678888999882 2257764 344444433221 2345566666666665 333 45566667777777
Q ss_pred cCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCCchHHHHHH
Q 038516 568 AGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL-YAATGRWDCVAKMR 645 (708)
Q Consensus 568 ~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~eA~~~~ 645 (708)
.|+++.|...|+++..-.| ....|......+.-.|+.++|.+.++++++++|....+-..-.++ .+-....++|++++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 7778888888888743334 466677777777778888888888888888888866554433333 33345567777766
Q ss_pred H
Q 038516 646 R 646 (708)
Q Consensus 646 ~ 646 (708)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.90 E-value=0.0015 Score=48.96 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---CCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRL----DP---EDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
.++..+...+...|++++|+..+++++++ .+ .-..++..+|.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666666777777777777777777653 12 224457788889999999999998888764
No 215
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.89 E-value=0.68 Score=47.79 Aligned_cols=410 Identities=11% Similarity=0.077 Sum_probs=219.9
Q ss_pred CcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchH-HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHH
Q 038516 180 DAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSY-SMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALL 258 (708)
Q Consensus 180 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 258 (708)
+-..|+.+|..--+..+.+.+..++..++.. .|....| ......=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 4455666666555555556666777777643 4554433 22333334677777888888877654 456666666665
Q ss_pred Hhcc-cCCChHHHHHHHhccCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHH---
Q 038516 259 DMYS-KCSDTQTAFSVFTRIEN------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISAT--- 328 (708)
Q Consensus 259 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~--- 328 (708)
..+. ..|+.+.....|+.... .+...|...|.--...+++.....+|++..+. |. ..|+....-+
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~-~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PL-HQLNRHFDRFKQL 195 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hh-hHhHHHHHHHHHH
Confidence 5443 45677777777777654 35556777777777778888888888888765 11 1111111111
Q ss_pred cCC------CCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCC-ChhHHHHHhhcCCCCEeeehhhHHHHhcCCChH
Q 038516 329 SAL------PASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD-AESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGE 401 (708)
Q Consensus 329 ~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 401 (708)
... ...+.+.++-...... ......++ .+......+....+ .+..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDP--------------SKSLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCc--------------cchhh
Confidence 000 0111111111100000 00000000 00000000000000 01111
Q ss_pred HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---CC----CCchhHHHHHHHhhHhcCCHHHHH
Q 038516 402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT---GH----GVEMSVCGSLVDMYAKNGDLRAAE 474 (708)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~g~~~~A~ 474 (708)
++...+.+.... --..+-...........++.-.+. .+ +++...|...+....+.|+.+.+.
T Consensus 249 ~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred HHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 111111111000 000001111111111122222221 11 224567777788888899999999
Q ss_pred HHHhhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhhHCC
Q 038516 475 SIFSQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL-LSACSHSGLVERGKILWNQMKEHS 550 (708)
Q Consensus 475 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~ 550 (708)
-+|+...-| -...|--.+.-....|+.+-|..++....+-- .|+......+ ..-+...|++..|..+++.+.+.
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e- 395 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFEESNGNFDDAKVILQRIESE- 395 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-
Confidence 999888643 23355555555556699998888888777653 3333332222 22455678999999999999885
Q ss_pred CCcCh-HHHHHHHHHHHhcCCHHHHH---HHHHhCCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 551 LIPGH-KHYSCMVSLLSRAGLLDEAE---NLIAESPYSEIRIELWRTLLS-----TCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 551 ~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
. |.. ..-..-+....+.|..+.+. .++........+..+...+.- .+...++.+.|..++.++.+..|++
T Consensus 396 ~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 396 Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 3 543 22223456677889988888 555554211133333333322 2344789999999999999999999
Q ss_pred cchHHHHHHHHHhcCCc
Q 038516 622 GTTHILLSNLYAATGRW 638 (708)
Q Consensus 622 ~~~~~~l~~~~~~~g~~ 638 (708)
-..|..+.+....++..
T Consensus 475 k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 99999998888777633
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.051 Score=49.31 Aligned_cols=125 Identities=18% Similarity=0.096 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCC-----chhHHhHHHH
Q 038516 84 ALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSE-----DTCVQTSLLG 158 (708)
Q Consensus 84 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~ 158 (708)
++++.+.-.+. +.-.++++.+..+...+.++.....+.+.-.+.||.+.|...++++.+..-.. +..+......
T Consensus 182 ~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44444444444 55555555555555444444455555555555566666666666554432222 2222233333
Q ss_pred HhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHh
Q 038516 159 MYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVG 209 (708)
Q Consensus 159 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 209 (708)
.|.-.+++..|...+.+++. .|...-|.-.-++.-.|+...|++.++.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555555555555443 2333333333333444555666666666555
No 217
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.79 E-value=0.017 Score=55.76 Aligned_cols=130 Identities=8% Similarity=0.110 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR-AGLLDEAENLIAES-PYSEIRIELWRTLLSTC 598 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 598 (708)
.+|..++..+.+.+..+.|..+|.+..+.+ ..+...|...+..-.. .++.+.|.++|+.+ ..-+.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 357788888888899999999999998542 2345556666666444 56666699999998 22225788999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
...||.+.|..++++++..-|... .+|......-.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998766655 57888888888999999999998877653
No 218
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.76 E-value=0.022 Score=50.49 Aligned_cols=89 Identities=16% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCChHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc----------------CcHHHHH
Q 038516 482 HPDLKCWNALLGGYSH-----YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS----------------GLVERGK 540 (708)
Q Consensus 482 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~ 540 (708)
..+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.||..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566677777777654 467777788888999999999999999998877542 2457789
Q ss_pred HHHHHhhHCCCCcChHHHHHHHHHHHhcCC
Q 038516 541 ILWNQMKEHSLIPGHKHYSCMVSLLSRAGL 570 (708)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 570 (708)
+++++|...|+.||.+++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999999987764
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.74 E-value=0.15 Score=46.63 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=90.4
Q ss_pred HhhHhcCCHHHHHHHHhhCCC--C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhcc
Q 038516 462 DMYAKNGDLRAAESIFSQVLH--P----DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHS 533 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~ 533 (708)
..+...|++++|.+.|+.+.. | -....-.++.++.+.|+++.|...+++.++. -|+. ..+...+.+.+.-
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344566777777777776641 2 1234455667777788888888888887774 4442 2223222222211
Q ss_pred C-------------cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 038516 534 G-------------LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 534 ~-------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 600 (708)
. ...+|... +..++.-|-......+|...+..+... -..---.++..|.+
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~--la~~e~~ia~~Y~~ 153 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR--LAEHELYIARFYYK 153 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH--HHHHHHHHHHHHHC
T ss_pred HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 1 11222222 333444444444555555554443211 01111224556888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHH
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTT---HILLSNLYAATGRWDCVA 642 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~ 642 (708)
.|.+..|..-++.+++.-|+.... ...++.+|.+.|..+.|.
T Consensus 154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999999999987654 567888899999988554
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.14 Score=46.53 Aligned_cols=138 Identities=8% Similarity=-0.021 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHHHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHYSCM 561 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~l 561 (708)
.-+.++..+.-.|.+.-.+..+.+.++..-+-+......|.+.-.+.||.+.|..+|++..+. ++.-...+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666667888888888998888643445666777778888899999999999977654 233333334444
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 562 VSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
...|.-++++.+|...+++.+...|. +...+.-.-+..-.|+...|++..+.+++..|.....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~ 322 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH 322 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 55667778888898888888665443 3334444444445788899999999999999886543
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.029 Score=54.53 Aligned_cols=139 Identities=12% Similarity=-0.026 Sum_probs=99.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516 492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (708)
...|.+.|++..|..-|++.+.. -++ ...-+.++...... .-..++..|.-++.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence 45677778888888777776652 111 01111111111111 1134566788889999999
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHh
Q 038516 572 DEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV-AKMRRKMK 649 (708)
Q Consensus 572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA-~~~~~~~~ 649 (708)
.+|+....+. ...+++...+-.-+.+|...|+++.|...|+++++++|+|-.+...|..+-.+...+.+. .+++..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998887 444467777777888999999999999999999999999999999888887777766665 67788775
Q ss_pred cC
Q 038516 650 GS 651 (708)
Q Consensus 650 ~~ 651 (708)
.+
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 43
No 222
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.46 Score=50.11 Aligned_cols=100 Identities=18% Similarity=0.072 Sum_probs=45.2
Q ss_pred HHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516 393 GHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA 472 (708)
Q Consensus 393 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 472 (708)
-+...|+..+|.++-.+.+ -||...|-.=+.+++..++|++-+++-+.. .++.-|..++.+|.+.|+.++
T Consensus 693 ~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHH
Confidence 3344444444444443332 344444444444444444444433332221 113334445555556666666
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 038516 473 AESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV 507 (708)
Q Consensus 473 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (708)
|.+.+.+...-. -...+|.+.|++.+|.++
T Consensus 763 A~KYiprv~~l~-----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 763 AKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HhhhhhccCChH-----HHHHHHHHhccHHHHHHH
Confidence 665554442211 334555555555555543
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.61 E-value=0.12 Score=47.20 Aligned_cols=141 Identities=13% Similarity=0.166 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcCh-HHHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD----EITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGH-KHYSC 560 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~-~~~~~ 560 (708)
.+-.....+...|++.+|...|+++... -|+ ......+..++.+.|+++.|...+++.++. .-.|.. ..+-.
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3334455666777788888888777765 222 123445556777777777777777776663 222221 11111
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch----------------
Q 038516 561 MVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT---------------- 624 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---------------- 624 (708)
++.++... ... .+ ......+....|...++.+++.-|++.-.
T Consensus 85 ~g~~~~~~--~~~---~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~ 142 (203)
T PF13525_consen 85 LGLSYYKQ--IPG---IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAE 142 (203)
T ss_dssp HHHHHHHH--HHH---HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--Ccc---ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHH
Confidence 11111111 000 00 00112234456666667777777766544
Q ss_pred -HHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 625 -HILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 625 -~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
-..+++.|.+.|++..|..-++.+.+.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 336788899999999999999988764
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.60 E-value=0.004 Score=46.66 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516 556 KHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRL 617 (708)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 617 (708)
.+++.++..|.+.|++++|++.++++ +...|. ..++..++..+...|++++|+..+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34566666666666666666666554 111111 345666777777788888888887777654
No 225
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.59 E-value=0.39 Score=45.17 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516 561 MVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ 613 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 613 (708)
+++.|.+.|.+..|..-++.+ |..+...+.+..+..+|...|..++|......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 445566666665555444333 44434455566666666667776666665443
No 226
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.12 Score=48.50 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCCHHHHHH
Q 038516 519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAG---LLDEAENLIAES-PYSEIRIELWRT 593 (708)
Q Consensus 519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~~~~~~~~~ 593 (708)
|...|..|...|...|+++.|..-|....+. .| ++..+..+..++..+. ...++..+++++ ..++.+......
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 5677877778888888888888888877763 22 3445555555554332 456788888887 333345666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
|...+...|++.+|...++.+++..|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 777788888999999999988888877655
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=96.52 E-value=0.32 Score=48.89 Aligned_cols=81 Identities=6% Similarity=-0.111 Sum_probs=49.7
Q ss_pred HHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 571 LDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 571 ~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
..+|.++.+++ ...+.|+.....++.+....++.+.|...+++++.++|+.+.+|...++++.-.|+.++|.+.+++..
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34555555554 22324555555555555556666777777777777777777767777777777777777766666654
Q ss_pred cC
Q 038516 650 GS 651 (708)
Q Consensus 650 ~~ 651 (708)
+.
T Consensus 400 rL 401 (458)
T PRK11906 400 QL 401 (458)
T ss_pred cc
Confidence 43
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.51 E-value=0.73 Score=43.18 Aligned_cols=195 Identities=21% Similarity=0.137 Sum_probs=138.5
Q ss_pred hhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516 454 MSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528 (708)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 528 (708)
..........+...+.+..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 4555666777777888888877776653 3445566667777777888888888888888753333 122222233
Q ss_pred -HHhccCcHHHHHHHHHHhhHCCCCc----ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhc
Q 038516 529 -ACSHSGLVERGKILWNQMKEHSLIP----GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR--IELWRTLLSTCVAK 601 (708)
Q Consensus 529 -~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 601 (708)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+.....+. ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 67888899999999888855 333 2334444445567788899999888887333233 56777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++.+.|...+..++...|+....+..++..+...|.++++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 89999999999999998886666777777777777788888888877654
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.43 E-value=0.019 Score=55.30 Aligned_cols=153 Identities=16% Similarity=0.062 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC----C-CCcChH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVIL----EHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH----S-LIPGHK 556 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~ 556 (708)
.|..|...|.-.|+++.|+..-+.-+ +-|-+. ....+..+..++.-.|+++.|.+.|+..... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444455555566666655433221 111111 1233555666666667777777766654322 1 122334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-Ccc
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD-----PE-DGT 623 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----p~-~~~ 623 (708)
+..+|.+.|.-...+++|+.+..+- .........+-+|..++...|+.++|..+.+..+++. |. ..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT 356 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT 356 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence 4455677777777777777766442 1111234456667777777888888877777666532 22 223
Q ss_pred hHHHHHHHHHhcCCch
Q 038516 624 THILLSNLYAATGRWD 639 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~ 639 (708)
....|.+.-...|.-+
T Consensus 357 ar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 357 ARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhHHHHHHhCCCc
Confidence 3455555555555443
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.048 Score=50.40 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=48.1
Q ss_pred cCcHHHHHHHHHHhhHC--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 533 SGLVERGKILWNQMKEH--SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
.|++..|...|..-++. +-.-....+..|+.++...|++++|...|..+ |..+--++.+-.|..+....|+.+.
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 34455555555555543 11112233334666666666666666555444 3332234555555555566666666
Q ss_pred HHHHHHHHHhcCCCCcc
Q 038516 607 VIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~ 623 (708)
|...++++.+.-|+.+.
T Consensus 234 A~atl~qv~k~YP~t~a 250 (262)
T COG1729 234 ACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHHHHHCCCCHH
Confidence 66666666666666554
No 231
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.22 E-value=1.5 Score=43.69 Aligned_cols=124 Identities=16% Similarity=0.177 Sum_probs=80.6
Q ss_pred HhcCC-HHHHHHHHhhCC---CCChHHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCCCh----HHHHHHHH-
Q 038516 465 AKNGD-LRAAESIFSQVL---HPDLKCWNALL----GGYSH---YGMAEEAFMVFEVILEHGLRPDE----ITFLSLLS- 528 (708)
Q Consensus 465 ~~~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~- 528 (708)
-+.|. -++|.++++.+. .-|...-|.+. .+|.+ ......-+.+-+-..+.|+.|-. ..-|.|..
T Consensus 390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 34454 778888887774 33444433322 22222 22344445555555667877743 33344444
Q ss_pred -HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH
Q 038516 529 -ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT 593 (708)
Q Consensus 529 -~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 593 (708)
-+...|++.++.-+-..+.+ +.|++.+|..++-++....+++||..++.++| |+...+++
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---~n~~~~ds 530 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP---PNERMRDS 530 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC---CchhhHHH
Confidence 35667899998877777765 88999999999999999999999999999987 45555544
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.20 E-value=0.36 Score=39.00 Aligned_cols=141 Identities=9% Similarity=0.032 Sum_probs=86.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516 495 YSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 574 (708)
+.-.|..++..++..+.... .+..-+++++--....-+-+-..+.++.+-+- -| ...+|++...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrV 75 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRV 75 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHH
Confidence 34468888888888888763 24555666665555555555556666655432 11 1234444444
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516 575 ENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLG 654 (708)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 654 (708)
...+-.+. ...+..+..+.....+|+-+.-.+++..+..-+..+|.....++.+|.+.|+..+|-++++++.++|++
T Consensus 76 i~C~~~~n---~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN---KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44444433 245566777778888999999999998888766667888999999999999999999999999988874
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.20 E-value=0.3 Score=46.74 Aligned_cols=192 Identities=13% Similarity=0.065 Sum_probs=110.1
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCC-------CC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC-Ch-HH
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVL-------HP--DLKCWNALLGGYSHYGMAEEAFMVFEVILEH--GLRP-DE-IT 522 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p-~~-~~ 522 (708)
..-++..++.-.+.++++.+.|+... .| ....+..|...|.+..|+++|.-+..+..+. .+.. |. .-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 33445666666677777777776652 11 2346777888888888888888777766542 1221 11 11
Q ss_pred HH-----HHHHHHhccCcHHHHHHHHHHhhHC----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC
Q 038516 523 FL-----SLLSACSHSGLVERGKILWNQMKEH----SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-------PYSE 585 (708)
Q Consensus 523 ~~-----~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~ 585 (708)
|. .+.-++...|...+|.+..++..+. |-.|. ......+.+.|...|+.|.|..-|+.+ ..+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm 283 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM 283 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence 22 2333677788888888887776553 44443 445667888888889888887777664 1111
Q ss_pred CCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhcCCCC----c--chHHHHHHHHHhcCCchHHHHHHHH
Q 038516 586 IRIELWRTLLSTCVAKRNS-----RMVIQAAEQVLRLDPED----G--TTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~p~~----~--~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
.....+...........-. =.|+++-++++++-..- . ..+-.++.+|..+|.-++-..-+.+
T Consensus 284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 1223333333332222111 23556656665543221 1 1245778888888877765544433
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.16 E-value=0.87 Score=41.94 Aligned_cols=170 Identities=16% Similarity=0.148 Sum_probs=92.5
Q ss_pred HhcCCHHHHHHHHhhCCC--C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhc----
Q 038516 465 AKNGDLRAAESIFSQVLH--P----DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITFLSLLSACSH---- 532 (708)
Q Consensus 465 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~---- 532 (708)
.+.|++++|.+.|+.+.. | ...+--.++.++.+.++++.|+..+++.... -|+ ...|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhccC
Confidence 356777777777776631 1 2334455666777777777777777777764 332 2234444444432
Q ss_pred ---cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038516 533 ---SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQ 609 (708)
Q Consensus 533 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 609 (708)
..|...+.+.+..+.+ ++.-|=...-..+|..-+..+... -...=..++..|.+.|.+..|..
T Consensus 123 ~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~--LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA--LAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred CccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH--HHHHHHHHHHHHHHhcChHHHHH
Confidence 1122222222222221 111111111112222222111000 00011234456788999999999
Q ss_pred HHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 610 AAEQVLRLDPEDGTT---HILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 610 ~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
-++++++--|+.+.+ +..+..+|...|..++|.+.-+-+..
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999999887776554 55667789999999999888776643
No 235
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.93 E-value=0.022 Score=34.18 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
..|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777778888888888888888888764
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=1.2 Score=41.98 Aligned_cols=115 Identities=13% Similarity=0.125 Sum_probs=50.0
Q ss_pred ccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 038516 532 HSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWR--TLLSTCVAKRNSRMVIQ 609 (708)
Q Consensus 532 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 609 (708)
..|++.+|...|+......- -+...--.|+.+|...|+.++|..++..+|....+..... .-+..+.+..+..+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34444444444444443210 0122333445555555555555555555544311111111 11111222222111111
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 610 AAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 610 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
+++.+..+|+|...-..|+..|...|+.++|.+.+-.+
T Consensus 225 -l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 225 -LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred -HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23334556666666666666666666666666554433
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.91 E-value=0.074 Score=45.67 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHY 558 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~ 558 (708)
....++..+...|++++|..+++++... .| |...+..++.++...|+...|.+.|+.+.+. |+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445566677778888888888888874 44 5667888888888888888888887776532 777776553
No 238
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.84 E-value=0.018 Score=34.60 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
.+|..++..+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467778888888888888888888888888863
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.43 Score=44.69 Aligned_cols=177 Identities=18% Similarity=0.123 Sum_probs=122.8
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516 471 RAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS 550 (708)
Q Consensus 471 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 550 (708)
+...++++....+....--.-.......|++.+|..+|....+.. .-+......+..+|...|+++.|..++..+-...
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 355666676665533333334456778899999999999999862 2244566778889999999999999999876542
Q ss_pred CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHH
Q 038516 551 LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD--PEDGTTHILL 628 (708)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l 628 (708)
-.........-+..+.+.....+...+..+....+.|...--.+...+...|+.+.|...+-.++..+ -++..+...|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 22222223344566777777777777777776563477777888888999999999998888777754 4456667788
Q ss_pred HHHHHhcCCchHH-HHHHHHH
Q 038516 629 SNLYAATGRWDCV-AKMRRKM 648 (708)
Q Consensus 629 ~~~~~~~g~~~eA-~~~~~~~ 648 (708)
..++.-.|.-+.+ ...++++
T Consensus 279 le~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 279 LELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHHHHhcCCCCHHHHHHHHHH
Confidence 8888777755544 3344443
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.73 E-value=0.096 Score=48.46 Aligned_cols=95 Identities=16% Similarity=0.089 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED---GTTHILLS 629 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 629 (708)
.|+.- ..+...|++.+|...|... |...-.+..+-.|+.++...|+++.|...|..+.+-.|++ +..+.-|+
T Consensus 144 ~Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45543 3455788899999888775 4333345566778899999999999999999999876655 46688999
Q ss_pred HHHHhcCCchHHHHHHHHHhcCC
Q 038516 630 NLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 630 ~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
.+..+.|+.++|..+++++.++-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 99999999999999999987753
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=3.7 Score=43.77 Aligned_cols=135 Identities=9% Similarity=-0.029 Sum_probs=66.0
Q ss_pred CCCCCCcchHHH-----HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCC---ChHHHHHHHhccCC--
Q 038516 210 SGVNPTQFSYSM-----LLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCS---DTQTAFSVFTRIEN-- 279 (708)
Q Consensus 210 ~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-- 279 (708)
-|+..+..-|.. +|+-+...+.+..|.++-..+...-..- ..++.....-+.+.. +.+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 355555544443 3445555566666666555443211111 344544555444442 23334444444444
Q ss_pred CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC---CCCHhHHHHHHHHHcCCCCccchHHHHHHHH
Q 038516 280 PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL---KPDEYTFAAIISATSALPASAYGKPLHALVI 345 (708)
Q Consensus 280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (708)
.+..+|..+.+-....|+.+-|..+++.=...+.. -.+..-+...+.-+...|+.+....++-.+.
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 34556777776666778888777776532211000 0111223444455556666666555554443
No 242
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.65 E-value=0.067 Score=53.43 Aligned_cols=63 Identities=8% Similarity=-0.032 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-I---ELWRTLLSTCVAKRNSRMVIQAAEQVLRL 617 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 617 (708)
...+..++.+|...|++++|+..++++....|+ . ..|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666667777777777777777665222243 2 23666777777777777777777777776
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.45 E-value=2.2 Score=39.75 Aligned_cols=200 Identities=19% Similarity=0.088 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHh-CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CCh-HHHHHHHH-
Q 038516 419 NFALSGALSACADLAILKQGEMIHSQAEKT-GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PDL-KCWNALLG- 493 (708)
Q Consensus 419 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~- 493 (708)
...+......+...+.+..+...+...... ........+......+...+++..+.+.+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344444555555666666666655555442 2334455555666677777778888888877653 222 22333333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC
Q 038516 494 GYSHYGMAEEAFMVFEVILEHGLRP----DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG 569 (708)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 569 (708)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..............+..+...+...+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 78899999999999999966 344 233344444456778899999999999987321113667788888999999
Q ss_pred CHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 570 LLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
++++|...+.......|+ ...+..+...+...++.+.+...+.+.....|.
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999888443344 455555655655777899999999999999997
No 244
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.20 E-value=6 Score=43.23 Aligned_cols=117 Identities=10% Similarity=0.007 Sum_probs=67.0
Q ss_pred cCChHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516 498 YGMAEEAFMVFEVILEHG-LRPDEI--TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 498 ~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 574 (708)
..+.+.|..++.+..... +.+... ....+.......+...++...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 456788888888775442 322222 22333333333322456666666544321 2344455555666688888888
Q ss_pred HHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 575 ENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 575 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
...+..|+.... .....--++.++...|+.++|...|+++..
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888854311 223333345555668888888888888743
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.14 E-value=0.83 Score=43.88 Aligned_cols=198 Identities=13% Similarity=0.019 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHH--hCCCCc---hhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CC---ChH
Q 038516 420 FALSGALSACADLAILKQGEMIHSQAEK--TGHGVE---MSVCGSLVDMYAKNGDLRAAESIFSQVL-----HP---DLK 486 (708)
Q Consensus 420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~~ 486 (708)
.++..+..+.+..|.++++...---... .....+ ...|..+..++.+.-++.+++.+-..-. .+ .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 3455555566666666655443211111 111111 1223344445555555555555444321 11 112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---C--ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcChHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLR---P--DEITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPGHKH 557 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~ 557 (708)
...++..++.-.+.++++++.|+....---. | ....+..|-..|....|+++|..+..+..+. ++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3344667777788899999999988763211 1 1245778888888999999998887776543 32221222
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516 558 -----YSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL 617 (708)
Q Consensus 558 -----~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 617 (708)
...|.-+|...|.+-+|.+.-+++ .........+..+...|+..||.+.|..-|+++...
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 223556677788887777777665 333223455777888899999999999999988754
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.11 E-value=0.74 Score=46.47 Aligned_cols=146 Identities=13% Similarity=0.043 Sum_probs=86.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH--Hhc
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL--SRA 568 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~ 568 (708)
+|.-.-+..++..-++.-+++++ +.||-.+...++ +-..+....++.+++++..+.|- .. +.... ...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~---lg~s~~~~~~ 243 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS---LGKSQFLQHH 243 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh---hchhhhhhcc
Confidence 34444556677777777788777 567655433333 23345567888888888776421 00 00000 011
Q ss_pred CCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHH
Q 038516 569 GLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
|..- +.+.+ ....+-..+-..+..++++.|+.++|++.++++++..|. +-.++..|...+...+.+.|+..++.
T Consensus 244 g~~~---e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 244 GHFW---EAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred cchh---hhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1110 11111 111123344455667778888888888888888877665 34567788888888888888888887
Q ss_pred HHhc
Q 038516 647 KMKG 650 (708)
Q Consensus 647 ~~~~ 650 (708)
+--+
T Consensus 320 kYdD 323 (539)
T PF04184_consen 320 KYDD 323 (539)
T ss_pred Hhcc
Confidence 6543
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.10 E-value=0.047 Score=35.19 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..+..++.+|...|++++|+++++++.+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999999875
No 248
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.02 E-value=1.8 Score=38.48 Aligned_cols=177 Identities=17% Similarity=0.103 Sum_probs=100.1
Q ss_pred cCCHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHH
Q 038516 467 NGDLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKIL 542 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 542 (708)
.|-+.-|+--|.+.. .|+ +..||-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++.-.|++.-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHH
Confidence 344444444444432 343 557787877788888999999998888884 443 22222222245557888888777
Q ss_pred HHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 543 WNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLI-AESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 543 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
+...-+. .-.|-...| +..-.+.-+..+|..-+ ++... .+.+.|...+-.+.- |++ .-+.+++++.+...+
T Consensus 156 ~~~fYQ~D~~DPfR~LW---LYl~E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~ 228 (297)
T COG4785 156 LLAFYQDDPNDPFRSLW---LYLNEQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL-GKI-SEETLMERLKADATD 228 (297)
T ss_pred HHHHHhcCCCChHHHHH---HHHHHhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccc
Confidence 6666554 222322222 12223344666776543 44432 355556554443322 111 012223333333333
Q ss_pred C-------cchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 621 D-------GTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 621 ~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
+ ..+|..|+.-|...|+.++|..+|+.....+
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3 2358899999999999999999999876643
No 249
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.96 E-value=3.1 Score=46.76 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=94.2
Q ss_pred CCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH----HHHHHHHhccCcHHHHHHHH
Q 038516 468 GDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF----LSLLSACSHSGLVERGKILW 543 (708)
Q Consensus 468 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~ 543 (708)
+++++|+.-+..+- ...|.-.+.---++|-+.+|+.+ +.|+...+ .+...-|...+.+++|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 55666666555543 11223333333455555555555 45665544 44445566677888887777
Q ss_pred HHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 544 NQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELW---RTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 544 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
+..-+ ..--+.+|..+|+|.+|+.+-.++... ...+. ..|...+...++.-+|-.+..+...-
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~--~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--- 1028 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEG--KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--- 1028 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---
Confidence 76543 223457788899999999998887543 22222 56667788888877777766654421
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 621 DGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
...-..+|.+...|++|.++.....
T Consensus 1029 ----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 ----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 2334557788889999998876554
No 250
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.91 E-value=1.3 Score=46.40 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHhcCCc-------hHHHHHHHHH
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI-LLSNLYAATGRW-------DCVAKMRRKM 648 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~eA~~~~~~~ 648 (708)
+++.+....++++|...+.++.+.+.-+...|. ..+-+|...|+. ++|.+++++.
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 344444455555555555555554443333333 223344445555 5555555544
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.75 Score=43.65 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH----HHHHhccCcHHHH
Q 038516 467 NGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL----LSACSHSGLVERG 539 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~~~~~~a 539 (708)
.|+..+|...+++++ +.|...+.-.=.+|...|+...-...+++..-. ..||...|..+ .-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 466666666666664 346666776677777788877777777777654 35555443332 2245567777777
Q ss_pred HHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 540 KILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRI------ELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 540 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
.+.-++..+ +.| |.=.-.++...+.-.|+..|+.+++.+-...=... ..|.. .-.+...+.++.|+.+|+
T Consensus 195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHHH
Confidence 777776665 333 23334456667777778888888776653220010 01111 112334567777777776
Q ss_pred HHH--hcCCCCcch
Q 038516 613 QVL--RLDPEDGTT 624 (708)
Q Consensus 613 ~~~--~~~p~~~~~ 624 (708)
+-+ +++.+++..
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 543 344455443
No 252
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.85 E-value=0.1 Score=49.29 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=50.2
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPYS-EIRIELWRTLLSTCVAKRNSR 605 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 605 (708)
.-|.+.|.+++|+..|...+. ..| +..++..-+.+|.+..++..|+.-...+... ..-...|..-+.+-...|+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 345666666666666666554 444 4555555555666666666555544443211 011222333344444456666
Q ss_pred HHHHHHHHHHhcCCCCcc
Q 038516 606 MVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~~~~ 623 (708)
+|.+-++.+++++|++..
T Consensus 183 EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhHHHHHhhCcccHH
Confidence 666666666666666433
No 253
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.81 E-value=2.7 Score=38.85 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHH
Q 038516 488 WNALLGGYSHYGMAEEAFMVFEVILEHGL-RP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSL 564 (708)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~ 564 (708)
|-.-+..-.+.|++++|.+.|+.+..+-. .| ...+...++.++-+.+++++|+...++.... +-.|+.. |...+.+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHH
Confidence 33334556677888888888888886521 11 2345666666788888888888888888775 4445533 3334444
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----------------HHH
Q 038516 565 LSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-----------------HIL 627 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~ 627 (708)
+. .+...+...-|. .-...|...++.+++.-|++.-+ -..
T Consensus 116 Ls----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~ 172 (254)
T COG4105 116 LS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA 172 (254)
T ss_pred HH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 43 111111110011 11223344444555555554322 236
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcC
Q 038516 628 LSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 628 l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+++.|.+.|.|-.|..-++.|.+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc
Confidence 788999999999999999988775
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.74 E-value=1.9 Score=43.71 Aligned_cols=101 Identities=9% Similarity=0.086 Sum_probs=69.3
Q ss_pred HHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCCH--HHHHHHHHHHH
Q 038516 524 LSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYS-EIRI--ELWRTLLSTCV 599 (708)
Q Consensus 524 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~~~l~~~~~ 599 (708)
..+..++.+.|+.++|++.+++|.+. ...........|+..|...+.+.++..++.+.... .|.. ..|...+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 34555677889999999999999864 22223456777899999999999999999887422 1332 33544443333
Q ss_pred hcCC---------------HHHHHHHHHHHHhcCCCCcch
Q 038516 600 AKRN---------------SRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 600 ~~~~---------------~~~a~~~~~~~~~~~p~~~~~ 624 (708)
..+| ...|.+++.++++.+|.-+..
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 3332 234678899999999987764
No 255
>PRK15331 chaperone protein SicA; Provisional
Probab=94.73 E-value=0.8 Score=39.15 Aligned_cols=89 Identities=9% Similarity=-0.063 Sum_probs=50.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516 493 GGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (708)
.-+...|++++|..+|+-+... .| |..-+..|..+|-..+++++|...|......+. -|+..+-..+.+|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 3445667777777777776663 33 333344444455556677777777766654321 1222233355667777777
Q ss_pred HHHHHHHHhCCCC
Q 038516 572 DEAENLIAESPYS 584 (708)
Q Consensus 572 ~~A~~~~~~~~~~ 584 (708)
+.|+..|+.....
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 7777776665433
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.35 Score=45.77 Aligned_cols=160 Identities=11% Similarity=0.004 Sum_probs=112.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh----HHHHHHHHHHHhcCCH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH----KHYSCMVSLLSRAGLL 571 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 571 (708)
.-.|+..+|-..|+++++. .+.|...+...=.+|.-.|+...-...++++... ..|+. ..-..+..++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568889999999999986 4557777887888999999999888888888764 23343 3334456677899999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCCchHHHHHH
Q 038516 572 DEAENLIAESPYSEIRIELWRT--LLSTCVAKRNSRMVIQAAEQVLRLDPED----GTTHILLSNLYAATGRWDCVAKMR 645 (708)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~~ 645 (708)
++|++.-++.... .....|.. +...+...|+..++.++.++--..-... .--|-+.+-.|.+.+.++.|.+++
T Consensus 192 ~dAEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999998555 33445554 4444566889999988877543221111 111446677788889999999999
Q ss_pred HHHhcCCCccCCc
Q 038516 646 RKMKGSMLGKEPG 658 (708)
Q Consensus 646 ~~~~~~~~~~~~~ 658 (708)
+.-.-..+.+..+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8754444555554
No 257
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.68 E-value=2.3 Score=42.97 Aligned_cols=151 Identities=11% Similarity=0.028 Sum_probs=82.9
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHH
Q 038516 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP---DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKH 557 (708)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~ 557 (708)
....+|..++..+.+.|+++.|...+.++...+..+ .......-...+-..|+..+|...++...+...... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 445678888888888888888888888887743222 222333344555667788888888877776311111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAK------RNSRMVIQAAEQVLRLDPEDGTTHILLSNL 631 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 631 (708)
...+...+.. ..+.....-........-..++..+...+... ++.+.+...|+++.+++|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000000000000122233333333334 788999999999999999999988888877
Q ss_pred HHhc
Q 038516 632 YAAT 635 (708)
Q Consensus 632 ~~~~ 635 (708)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6553
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.66 E-value=2.1 Score=36.23 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516 489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA 568 (708)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (708)
..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.+ ..+.++.++. .++.......+..+.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555555666677777777766654 234555666666666543 2333344332 11222233355666666
Q ss_pred CCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 569 GLLDEAENLIAESPYSEIRIELWRTLLSTCVAK-RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 569 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
+.++++.-++.+++.. .. .+..+..+ ++.+.|.+++.+ ++++..|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~~---~~----Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGNF---KD----AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcCH---HH----HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6677777777665422 11 22222223 667777776664 234455665555443
No 259
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.61 E-value=0.1 Score=41.78 Aligned_cols=57 Identities=12% Similarity=-0.029 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.-+....|+++.|++.|.+++.+-|..+++|+..+.+|.-+|+.++|.+-+++..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999999988764
No 260
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.58 E-value=5.5 Score=39.78 Aligned_cols=77 Identities=9% Similarity=0.115 Sum_probs=57.3
Q ss_pred CCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcc---cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 038516 46 QSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLV---SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLA 122 (708)
Q Consensus 46 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 122 (708)
-++.+|-.||.-|...|..++.++++++|..|-+. +|..-|.+=....+ +.....+|.+-....+ +...|..-|
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~d-f~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKD-FRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhh-HHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 57889999999999999999999999999877543 57777776665667 8888888888776544 344444444
Q ss_pred HHh
Q 038516 123 QAV 125 (708)
Q Consensus 123 ~~~ 125 (708)
.-.
T Consensus 117 ~YI 119 (660)
T COG5107 117 EYI 119 (660)
T ss_pred HHH
Confidence 433
No 261
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.58 E-value=1.9 Score=36.48 Aligned_cols=121 Identities=15% Similarity=0.273 Sum_probs=67.9
Q ss_pred HHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 038516 460 LVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLV 536 (708)
Q Consensus 460 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 536 (708)
++..+...+.......+++.+.. .+....+.++..|++.+ ..+.+..++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 33334444444444444444421 23345555555555442 2333344332 22344455577778888888
Q ss_pred HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 038516 537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA-GLLDEAENLIAESPYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 600 (708)
+++..++.++.. +...+..+... ++.+.|.+++.+. .++..|..++..+..
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~----~~~~lw~~~~~~~l~ 137 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ----NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC----CCHHHHHHHHHHHHc
Confidence 888888777643 33334444444 7888888888763 366788888776653
No 262
>PRK10941 hypothetical protein; Provisional
Probab=94.51 E-value=0.27 Score=46.55 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEE
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHV 670 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (708)
.+.+-.++.+.++++.|.++.+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---------------- 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---------------- 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence 4556667889999999999999999999999999999999999999999999988877665432
Q ss_pred EEeCCCCCcchHHHHHHHHHHHHHHH
Q 038516 671 FSSGDQSHPKIDDAQAELHRLRGNMR 696 (708)
Q Consensus 671 ~~~~~~~~~~~~~~~~~l~~l~~~~~ 696 (708)
-|.++.|...++.|+++..
T Consensus 248 -------dp~a~~ik~ql~~l~~~~~ 266 (269)
T PRK10941 248 -------DPISEMIRAQIHSIEQKQI 266 (269)
T ss_pred -------chhHHHHHHHHHHHhhcCc
Confidence 5788888888888877653
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.51 E-value=1.4 Score=46.21 Aligned_cols=157 Identities=15% Similarity=0.124 Sum_probs=97.9
Q ss_pred HHHHhhHhcCCHHHHHHHHhhCCC-CC---------hHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHH
Q 038516 459 SLVDMYAKNGDLRAAESIFSQVLH-PD---------LKCWNALLGGYSH----YGMAEEAFMVFEVILEHGLRPDEITFL 524 (708)
Q Consensus 459 ~l~~~~~~~g~~~~A~~~~~~~~~-~~---------~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~ 524 (708)
.++...+=.|+-+.+.+.+....+ ++ ...|+..+..++. ..+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 344444444555555555544321 11 1234444444433 34677889999999885 78877765
Q ss_pred HHHH-HHhccCcHHHHHHHHHHhhHC-CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CCHHHHHHHHHHH-
Q 038516 525 SLLS-ACSHSGLVERGKILWNQMKEH-SLIP--GHKHYSCMVSLLSRAGLLDEAENLIAESPYSE-IRIELWRTLLSTC- 598 (708)
Q Consensus 525 ~ll~-~~~~~~~~~~a~~~~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~- 598 (708)
..-. .+...|+.++|++.|++.... .--| ....+.-++..+.-.++|++|.+.+.++.... -+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 5544 667789999999999976642 1111 23345557778888999999999998884432 2355566665554
Q ss_pred HhcCCH-------HHHHHHHHHHHhc
Q 038516 599 VAKRNS-------RMVIQAAEQVLRL 617 (708)
Q Consensus 599 ~~~~~~-------~~a~~~~~~~~~~ 617 (708)
...++. ++|...+.++-.+
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHH
Confidence 347777 7777777766544
No 264
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.44 E-value=0.42 Score=39.33 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhc--cCCCChhHHHHHHHHH
Q 038516 215 TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTR--IENPDLVSWNSMIAGY 292 (708)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~ 292 (708)
|..++..+|.++++.|+++....+++..= |+.++... ..+. +.. -..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence 45678889999999999888777775432 33322110 0001 111 1128888999999999
Q ss_pred HcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCC
Q 038516 293 MENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSAL 331 (708)
Q Consensus 293 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 331 (708)
+.+|++..|+++++...+.-+++.+..+|..|+.-+...
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999888877888888888888765443
No 265
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.40 E-value=1.6 Score=36.49 Aligned_cols=116 Identities=18% Similarity=0.084 Sum_probs=67.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHH
Q 038516 490 ALLGGYSHYGMAEEAFMVFEVILEHGLRPD---EITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLL 565 (708)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~ 565 (708)
.-.....+.|++.+|.+.|+.+..+ .+.. ...-..++.++.+.+++++|...+++.++. .-.|+ ..|.....++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL 92 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHH
Confidence 3344556678888888888888775 2222 234556777888888888888888888774 22222 2344344444
Q ss_pred HhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 566 SRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
..-...+ ..+..+... =+..+....|...++++++.-|++.-
T Consensus 93 ~~~~~~~---~~~~~~~~~-------------drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 93 SYYEQDE---GSLQSFFRS-------------DRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHhh---hHHhhhccc-------------ccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 3322222 222222100 01123456888889999999998754
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.36 E-value=1.9 Score=37.81 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=60.3
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSR 605 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 605 (708)
..+...+++++|..-++........-+ ...--.|.......|.+++|+..++......-.+.....-+..+...||-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 356777888888877776664211111 111223567788888999999988776433112333344455677888888
Q ss_pred HHHHHHHHHHhcCCCC
Q 038516 606 MVIQAAEQVLRLDPED 621 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~~ 621 (708)
+|...|+++++.+++.
T Consensus 177 ~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 177 EARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHccCCh
Confidence 8998888888887543
No 267
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.36 E-value=0.58 Score=38.51 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=30.6
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHh
Q 038516 550 SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~ 600 (708)
.+.|+..+..+++.+|+..|++..|+++++.. +.. .+...|..|+.-+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~-i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP-IPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH
Confidence 45566666666777776667777776666554 322 346667666655443
No 268
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.28 E-value=0.31 Score=44.91 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=83.1
Q ss_pred HHHHHhhcCC--CCCcccHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhcccc---------
Q 038516 66 DARQVFDEIP--KRSLVSYNALIAAYSRD-----HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLE--------- 129 (708)
Q Consensus 66 ~A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------- 129 (708)
-....|...+ ++|-.+|-+.+..|... +. .+-....++.|.+.|+.-|..+|+.||..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~H-veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTH-VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccch-HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3445666666 67777888888777653 34 7777888999999999999999999998875432
Q ss_pred -------chHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCC-hhHHHHHhccCC
Q 038516 130 -------DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD-FESAKRIFGLIG 177 (708)
Q Consensus 130 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~ 177 (708)
.-..+..++++|...|+-||..+-..|++++.+.+- ..+..++.-.|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 234467889999999999999999999999988765 334444444444
No 269
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.19 E-value=2.7 Score=41.76 Aligned_cols=72 Identities=18% Similarity=0.094 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCChhHHHHHhhcCCC---C----EeeehhhHHHHhc---CCChHHHHHHHHHHhHCCCccCHHHHHHHHH
Q 038516 358 TLLNMYFKNGDAESPQKVFMLIAEK---D----IVLWTEMIIGHSR---MGDGECAIKLFCKMCREGLKCDNFALSGALS 427 (708)
Q Consensus 358 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 427 (708)
.++-+|....+++...++.+.+... + ...-.....++.+ .|+.++|+.++..+......+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444466666666666666665543 1 1111123445555 7888888888888666666777777766555
Q ss_pred HH
Q 038516 428 AC 429 (708)
Q Consensus 428 ~~ 429 (708)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 270
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=4.5 Score=36.89 Aligned_cols=86 Identities=13% Similarity=0.115 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCcchH
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES-------PYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRL----DPEDGTTH 625 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~ 625 (708)
+..+.+.|.+..+++||-..+.+- ... ++ -..+...+-.+....|+..|+..++.--+. .|++....
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y-~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY-NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc-ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 444456666666666666555443 111 11 112333333344455777777776664432 35555556
Q ss_pred HHHHHHHHhcCCchHHHHHH
Q 038516 626 ILLSNLYAATGRWDCVAKMR 645 (708)
Q Consensus 626 ~~l~~~~~~~g~~~eA~~~~ 645 (708)
..|...| ..|+.+++..+.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 6666544 456666665543
No 271
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.00 E-value=3.1 Score=44.93 Aligned_cols=141 Identities=14% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH
Q 038516 460 LVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERG 539 (708)
Q Consensus 460 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 539 (708)
..+.+.+.|++++|...|-+.+.--.. ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-
T Consensus 374 Ygd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 374 YGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence 334445667777776666544321101 12345555555566666667777776644 333344566677777777666
Q ss_pred HHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 540 KILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
.++.+.-- .|.-- .-....+..+.+.+-+++|..+-.+... ...++..+ +...+|+++|.++++
T Consensus 451 ~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~---he~vl~il---le~~~ny~eAl~yi~ 514 (933)
T KOG2114|consen 451 TEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLATKFKK---HEWVLDIL---LEDLHNYEEALRYIS 514 (933)
T ss_pred HHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc---CHHHHHHH---HHHhcCHHHHHHHHh
Confidence 66555443 12110 0123344556666666666666555432 12222222 344567777777665
No 272
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.91 E-value=0.71 Score=42.70 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=76.5
Q ss_pred HHHHhhCC--CCChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC------------
Q 038516 474 ESIFSQVL--HPDLKCWNALLGGYSHY-----GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG------------ 534 (708)
Q Consensus 474 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------ 534 (708)
+..|.... +.|-.+|...+..+... +.++-....++.|.+-|+.-|..+|+.|+..+=+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34455554 46677777777776543 566777778899999999999999999998775533
Q ss_pred ----cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516 535 ----LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 535 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (708)
+-+-++.++++|...|+.||.++-..|++++++.|-.
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3356789999999999999999999999999988853
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.89 E-value=0.12 Score=30.90 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566666777777777777777777777774
No 274
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.80 E-value=1.5 Score=45.14 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=91.9
Q ss_pred HHhcCCChHHHHHHHH-HHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHH
Q 038516 393 GHSRMGDGECAIKLFC-KMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLR 471 (708)
Q Consensus 393 ~~~~~~~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 471 (708)
...-.++++++.++.+ .-.-..++ ......++.-+.+.|..+.|.++...-. .-.+...++|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3445677777666654 11111111 3335566666777777777777644321 1224456788888
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCC
Q 038516 472 AAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSL 551 (708)
Q Consensus 472 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 551 (708)
.|.++.++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.|...|+.+.-.++.+.....|.
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 8888876654 666888888888888888888888877543 44555566677777777777666665442
Q ss_pred CcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038516 552 IPGHKHYSCMVSLLSRAGLLDEAENLIAESP 582 (708)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (708)
++....++.-.|+.++..+++.+..
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 3333444555677777777666653
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.78 E-value=2.2 Score=36.33 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=61.9
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCcChHHH-HHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIPGHKHY-SCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA-KRNSRM 606 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 606 (708)
.-...++.+++..++..+.- +.|..... ..-+..+.+.|+|.+|..+++++....|....-..|+..|.. .||.+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~- 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS- 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-
Confidence 34456677777777777765 45542222 223455778888888888888886554555555556655554 34332
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516 607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK 643 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 643 (708)
=....+++++..|+. . -..|+..+........|..
T Consensus 96 Wr~~A~evle~~~d~-~-a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGADP-D-ARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCCh-H-HHHHHHHHHHhccccchhh
Confidence 233345555555432 2 2344445555444444443
No 276
>PRK09687 putative lyase; Provisional
Probab=93.75 E-value=6.9 Score=37.76 Aligned_cols=132 Identities=9% Similarity=-0.042 Sum_probs=53.1
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhC-CCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQV-LHPDLKCWNALLGGYSHYG-MAEEAFMVFEVILEHGLRPDEITFLSLLSAC 530 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 530 (708)
+..+-...+.++++.|+.+ |...+-.+ ..+|...-...+.++.+.+ +...+...+..+.. .+|...-...+.++
T Consensus 141 ~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 141 STNVRFAVAFALSVINDEA-AIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred CHHHHHHHHHHHhccCCHH-HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 3334444445555555432 33333222 2344333333333443332 12344444444443 33444444455555
Q ss_pred hccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHH
Q 038516 531 SHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLL 595 (708)
Q Consensus 531 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 595 (708)
.+.++ ..+...+-...+.+. .....+.++...|.. +|...+..+....+|..+-....
T Consensus 217 g~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 217 ALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred HccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHH
Confidence 55554 234443333333211 112334444444442 44444444432223444433333
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.52 E-value=0.13 Score=31.27 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 624 THILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999998854
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.44 E-value=0.54 Score=39.17 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=39.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
..++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 36777777777777777777777777777777777788888877777776544
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.33 E-value=0.74 Score=39.17 Aligned_cols=71 Identities=18% Similarity=0.035 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516 567 RAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR 637 (708)
Q Consensus 567 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 637 (708)
+.++.+++..+++.+..-.|. +..-..-.+.+...|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 444555555555554211122 22222223334455555555555555555555555444445544444444
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.14 E-value=4 Score=33.24 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI 552 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 552 (708)
.....+......|+-++-.+++.++.+.+ +|++....-+..+|.+.|+..++.+++.++-+.|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455667777788888777877776533 667777777777888888888888888887776653
No 281
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.01 E-value=11 Score=37.84 Aligned_cols=124 Identities=10% Similarity=0.032 Sum_probs=69.0
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCC-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHS-LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIEL-WRTLLSTCVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~ 600 (708)
|..++..-.+..-++.|..+|-++.+.| +.+++..+++++.-+ ..|+..-|..+|+-.....||... ....+..+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4555555555566677777777777665 445666666666544 356666677776654222233333 3334444555
Q ss_pred cCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 601 KRNSRMVIQAAEQVLRLDPED--GTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
.+|-+.|..+|+..++.-.+. ..+|..+..--..-|+.+.|..+-++
T Consensus 479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~r 527 (660)
T COG5107 479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEER 527 (660)
T ss_pred hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence 666677777777555432222 34455555555555666555444333
No 282
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.00 E-value=17 Score=40.04 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 038516 197 MKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVI 243 (708)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 243 (708)
.+++-++|+.-.. ...+..+.+.+ |.+..-|-.|.++..-..
T Consensus 196 ~eE~~~fl~~~~~--l~Ld~~~~~~L---~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 196 TEEAAAFLNDRGS--LPLDAADLKAL---YDRTEGWAAALQLIALAL 237 (894)
T ss_pred hHHHHHHHHHcCC--CCCChHHHHHH---HhhcccHHHHHHHHHHHc
Confidence 4566666655432 34455444433 234444555555544433
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.84 E-value=21 Score=40.69 Aligned_cols=156 Identities=16% Similarity=0.126 Sum_probs=80.8
Q ss_pred CChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHH
Q 038516 265 SDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALV 344 (708)
Q Consensus 265 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 344 (708)
+++++|+.-+..+. ...|...+..--+.|.+.+|+.++ .|+...+..+..+|+. .+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly---------~~~~e~~k~i~~~ya~------------hL 949 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY---------KPDSEKQKVIYEAYAD------------HL 949 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee---------ccCHHHHHHHHHHHHH------------HH
Confidence 56677776666655 334455555556778888888766 5777776666554431 11
Q ss_pred HHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHH--H
Q 038516 345 IKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFA--L 422 (708)
Q Consensus 345 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--~ 422 (708)
.+.. .+.-..-+|.++|..++|.+. |...|+|.+|+.+-.++... -|... -
T Consensus 950 ~~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen 950 REEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred HHhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence 1111 112233456777777777554 45567788877777665321 11111 1
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhh
Q 038516 423 SGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQ 479 (708)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 479 (708)
..+..-+...++.-+|-++..+.... ...-+..|++...+++|..+-..
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 23344444445444444444332211 11223445555556666655443
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.79 E-value=0.31 Score=46.16 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=59.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc--
Q 038516 492 LGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA-- 568 (708)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 568 (708)
...|.+.|.+++|+..|.+.+. +.| |.+++..-..+|.+...+..|..-....+..+ ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence 4579999999999999999888 477 88999888999999999998887777665421 1234556555
Q ss_pred -----CCHHHHHHHHHhC
Q 038516 569 -----GLLDEAENLIAES 581 (708)
Q Consensus 569 -----g~~~~A~~~~~~~ 581 (708)
|+..||.+-++..
T Consensus 174 AR~~Lg~~~EAKkD~E~v 191 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETV 191 (536)
T ss_pred HHHHHhhHHHHHHhHHHH
Confidence 4555555555544
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.51 E-value=15 Score=38.35 Aligned_cols=123 Identities=11% Similarity=-0.023 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH-H
Q 038516 520 EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS-T 597 (708)
Q Consensus 520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~-~ 597 (708)
..+|...+.--...|+.+...-+|++..-- ..-=...|--.+.-....|+.+-|..++... ...-+.......+-. .
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 456777777778888888888888877531 1111344555566666678888888777665 111122222222222 3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK 643 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 643 (708)
+...||.+.|..+++++.+--|+....-..-+......|+.+.+.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 4557899999999998887658766655555666777888888773
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.47 E-value=2.4 Score=38.63 Aligned_cols=23 Identities=9% Similarity=-0.133 Sum_probs=13.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
-..+|...+++++|...+.+..+
T Consensus 37 AAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHH
Confidence 34455556666666666655553
No 287
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.40 E-value=0.034 Score=47.59 Aligned_cols=85 Identities=12% Similarity=0.106 Sum_probs=63.5
Q ss_pred HHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhH
Q 038516 120 SLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKE 199 (708)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 199 (708)
.+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888888889999999887777889999999999999888888888884332 334556677777777777
Q ss_pred HHHHHHHH
Q 038516 200 GLSLFGAM 207 (708)
Q Consensus 200 A~~~~~~m 207 (708)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77766654
No 288
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=4 Score=37.16 Aligned_cols=91 Identities=14% Similarity=-0.009 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC---------CCCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 560 CMVSLLSRAGLLDEAENLIAES---------PYSEIRIEL-----------WRTLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
.=++-+.+.|++.||..-|.++ ..+ |...- +.....++...|++-++++....++..+|
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEk-P~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEK-PGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccC-CCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 3445677778888777766654 233 33222 22333445568999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 620 EDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+|..+|...+.+....=+.+||..-|.+..+.
T Consensus 262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 99999999999999998999999988888764
No 289
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.12 E-value=3.1 Score=42.97 Aligned_cols=153 Identities=10% Similarity=0.054 Sum_probs=77.9
Q ss_pred HhcCCHHHHHHHHh--hCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 038516 465 AKNGDLRAAESIFS--QVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKI 541 (708)
Q Consensus 465 ~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 541 (708)
.-.|+++++.++.. ++. .-...-.+.++.-+.+.|-++.|+.+.+ |..+ -.....+.|+.+.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHHH
Confidence 34566777554443 221 1123345666666667777777776522 2221 1223345677777665
Q ss_pred HHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 542 LWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 542 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
+.+.. ++...|..|++...++|+++-|++.+++... +..|+-.|...|+.+.-.++.+.+....-
T Consensus 340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 54322 3456677777777777777777777777642 34455556666776666665555443322
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 622 GTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
+.....++.-.|+.++..+++..
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23333445555777777666653
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.12 E-value=0.13 Score=48.89 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=77.5
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516 566 SRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM 644 (708)
Q Consensus 566 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 644 (708)
...|.+++|.+.+.+. +..++...++..-..++.+.++...|++-+..+++++|+.+.-|-.-+.+...+|+|++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 3577789999998887 334345566666777788899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccCCc
Q 038516 645 RRKMKGSMLGKEPG 658 (708)
Q Consensus 645 ~~~~~~~~~~~~~~ 658 (708)
++...+.+.....+
T Consensus 205 l~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 205 LALACKLDYDEANS 218 (377)
T ss_pred HHHHHhccccHHHH
Confidence 99998887754443
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.09 E-value=0.19 Score=29.98 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..+..+|.+|...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999988664
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.77 E-value=0.33 Score=29.53 Aligned_cols=27 Identities=22% Similarity=0.140 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRL 617 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 617 (708)
|..|+..|...|++++|+.++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777888888888888888885543
No 293
>PRK09687 putative lyase; Provisional
Probab=91.25 E-value=15 Score=35.50 Aligned_cols=75 Identities=11% Similarity=0.051 Sum_probs=36.0
Q ss_pred CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHH
Q 038516 350 DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSAC 429 (708)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 429 (708)
.++..+....+.++.+.|+......+.+.+..++ .....+.++...|.. +|...+..+.+. .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 3444555555555555555332223333333222 223455566666664 566666666653 23554444444444
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.10 E-value=3.3 Score=35.51 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=75.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChH-HHHH--HHHHHHhcCC
Q 038516 495 YSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHK-HYSC--MVSLLSRAGL 570 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~--l~~~~~~~g~ 570 (708)
+++.+..++|+.-|..+.+.|...-.+. ..-......+.|+...|...|+++-.....|... -..- -..++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 3556777888888888887765422211 1122234667788888888888887654334322 1111 1345667888
Q ss_pred HHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 571 LDEAENLIAESPYS--EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 571 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
+++...-++-+... +.....-..|.-+-.+.|++..|...|+++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888777776322 12334455566666778888888888887776
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.03 E-value=2.2 Score=40.48 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHYSC 560 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~ 560 (708)
++..++..+...|+++.+...++++... .| |...|..++.+|.+.|+...|+..|+.+.+. |+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3444555555555566666666666553 33 4555666666666666666666655555441 55665554443
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.02 E-value=1.8 Score=38.01 Aligned_cols=71 Identities=8% Similarity=0.020 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516 562 VSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY 632 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 632 (708)
+.++.+.+.++.|.+-..++-...|. ...+..-..+|.+...++.|+.-|+++++++|....+.....++-
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence 34455555566555555444222122 222223334566667778888888888888887766555554443
No 297
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.87 E-value=3.6 Score=33.65 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
.-.|.-++.+.++++++.++.+.+++.+|+|
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 3334444555555555555555555555554
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.85 E-value=0.32 Score=26.91 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788899999999999988775
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.79 E-value=29 Score=38.10 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=42.4
Q ss_pred CChhHHHHHhccCCC-------CCcccHHHHHHH--HhcCCChhHHHHHHHHHHhCCC---------CCCcchHHHHHHH
Q 038516 164 GDFESAKRIFGLIGD-------KDAVAWNSIILG--NFKNDKMKEGLSLFGAMVGSGV---------NPTQFSYSMLLNA 225 (708)
Q Consensus 164 g~~~~A~~~~~~~~~-------~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~ 225 (708)
++...|.+.++.+.. +...++-.++.+ +.+.+..+++++.++.+..... .|-...|..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 566666666654432 112223333333 2345666777777776633211 2344556666666
Q ss_pred Hh--ccCChhHHHHHHHHHH
Q 038516 226 CS--RMGNFVCGKVIHARVI 243 (708)
Q Consensus 226 ~~--~~~~~~~a~~~~~~~~ 243 (708)
++ ..|+++.+...+.++.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 54 5667667666655554
No 300
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.74 E-value=17 Score=35.21 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCcccHH---HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC
Q 038516 421 ALSGALSACADLAILK---QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL 481 (708)
Q Consensus 421 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 481 (708)
++..+..++...+..+ ++..+++.+.... +..+.++-.-+..+.+.++.+.+.+.+.+|+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 4445555555544433 3333444443221 2223333333444445666666666666664
No 301
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.65 E-value=1.3 Score=29.70 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh
Q 038516 625 HILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL 698 (708)
Q Consensus 625 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 698 (708)
+..++-.+.+.|+|++|.+..+.+.+. .|++.+.......+..+|.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kd 51 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKD 51 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhcc
Confidence 567788899999999999999998764 677777777777777776653
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.56 E-value=13 Score=36.03 Aligned_cols=141 Identities=17% Similarity=0.195 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhHCCCccCHHHHHHHHHHHhC--c----ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516 401 ECAIKLFCKMCREGLKCDNFALSGALSACAD--L----AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE 474 (708)
Q Consensus 401 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 474 (708)
.+.+.+++.|.+.|.+-+..+|.+....... . .....+..+++.|++...-.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT--------------------- 137 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT--------------------- 137 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence 4556777888888887777666553333222 1 133455556666655432110
Q ss_pred HHHhhCCCCChHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCc--HHHHHHHHHHh
Q 038516 475 SIFSQVLHPDLKCWNALLGGYSHYGM----AEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGL--VERGKILWNQM 546 (708)
Q Consensus 475 ~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~ 546 (708)
.++-.++..++.. ..++ .+.+..+|+.+.+.|+..+. .....++..+..... +.++.++++.+
T Consensus 138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1222223333222 1122 24567788888888877643 334444443333222 45788899999
Q ss_pred hHCCCCcChHHHHHHHHHHHhcCCH
Q 038516 547 KEHSLIPGHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 547 ~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (708)
.+.|+++....|..++-.-.-.+..
T Consensus 209 ~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 209 KKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHcCCccccccccHHHHHHhcCCch
Confidence 9999988888787665444333333
No 303
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.43 E-value=55 Score=40.69 Aligned_cols=369 Identities=15% Similarity=0.135 Sum_probs=172.3
Q ss_pred HHhccCChhHHHHHHHHHHHhC--CCCChhhHHHHHHhcccCCChHHHHHHHhc-cCCCChhHHHHHHHHHHcCCCchHH
Q 038516 225 ACSRMGNFVCGKVIHARVIISN--TQVDLPLENALLDMYSKCSDTQTAFSVFTR-IENPDLVSWNSMIAGYMENGNGEKA 301 (708)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A 301 (708)
+-.+.+.+..|...++.-.... .......+..+...|+..+++|...-+... ...|+. + .-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHhhccHHHH
Confidence 3334455555555555421000 011223344455577777777776666552 323332 2 223334567888888
Q ss_pred HHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHH-hHHHHHHHhcCCChhHHHHHhhcC
Q 038516 302 VDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVG-TTLLNMYFKNGDAESPQKVFMLIA 380 (708)
Q Consensus 302 ~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~ 380 (708)
...|+.+.+. -++...+++.++......+.++......+...... .+....+ +.=+.+-.+.++++.......
T Consensus 1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence 8888888854 23336677777776666666666555433333222 2222222 223444467777777766655
Q ss_pred CCCEeeehhh--HHHHhcCCChH--HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhH
Q 038516 381 EKDIVLWTEM--IIGHSRMGDGE--CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSV 456 (708)
Q Consensus 381 ~~~~~~~~~l--i~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 456 (708)
..+...|... ...+.+..+-+ .-...++.+.+.-+ .-+.+|+..|.+.. .
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i--------~~lsa~s~~~Sy~~------------------~ 1596 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVI--------ENLSACSIEGSYVR------------------S 1596 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhh--------hhHHHhhccchHHH------------------H
Confidence 4455556554 22222221111 11122222222111 11222332222222 2
Q ss_pred HHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCC-----hHHHHH
Q 038516 457 CGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEV-ILEHGLRPD-----EITFLS 525 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~-----~~~~~~ 525 (708)
|..++....-.. .+.-.+.+..... .+..-|..-+..-....+..+-+--+++ +......|+ ..+|..
T Consensus 1597 Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1597 YEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence 222222222111 1111111111110 1112232222211111111111111121 111111222 345777
Q ss_pred HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-----CC--CC----C---CHHHH
Q 038516 526 LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-----PY--SE----I---RIELW 591 (708)
Q Consensus 526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~----~---~~~~~ 591 (708)
..+.+..+|.++.|...+-...+.+ .| ..+--.+..+...|+...|+.++++. +. .+ | +..+.
T Consensus 1676 sAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred HHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence 7777888899988887766665533 23 33444667888899999998888775 11 00 1 11222
Q ss_pred H--H-HHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516 592 R--T-LLSTC-VAKRN--SRMVIQAAEQVLRLDPEDGTTHILLSNLY 632 (708)
Q Consensus 592 ~--~-l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 632 (708)
. . ++.-| ...++ .+.-++.|.++.+..|.....|.++|.-|
T Consensus 1753 ~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 2 1 11112 22333 44567788899999997777777777433
No 304
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.40 E-value=0.81 Score=41.33 Aligned_cols=84 Identities=13% Similarity=0.133 Sum_probs=59.6
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516 565 LSRAGLLDEAENLIAESPYSEIRI-ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK 643 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 643 (708)
|....++..|..-|.++-...|.. ..|..-+-.+.+..+++.+..-..+++++.|+..-.+..|+..+.....+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 334455666666666653333544 4455555556667788888888888888888888888888888888888888888
Q ss_pred HHHHH
Q 038516 644 MRRKM 648 (708)
Q Consensus 644 ~~~~~ 648 (708)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 87776
No 305
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.30 E-value=0.46 Score=41.01 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----chHHHHHHHHH
Q 038516 604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR----WDCVAKMRRKM 648 (708)
Q Consensus 604 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~eA~~~~~~~ 648 (708)
+++|..-+++++.++|+...++..+|++|...+. ..+|.++|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 5567777888889999999999999999988753 33444444443
No 306
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.21 E-value=32 Score=37.67 Aligned_cols=146 Identities=11% Similarity=-0.064 Sum_probs=82.4
Q ss_pred hhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHH---HHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhc
Q 038516 50 MYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALI---AAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVS 126 (708)
Q Consensus 50 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 126 (708)
....-++...+..-++.|+.+-+.-.-+....-+.+. .-+.+.|+ +++|...|-+-... +.| ..+++-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd-f~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD-FDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 4455667777777777777776654432222222222 23445677 88887766654432 222 23556666
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCc-ccHHHHHHHHhcCCChhHHHHH
Q 038516 127 LLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDA-VAWNSIILGNFKNDKMKEGLSL 203 (708)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 203 (708)
.......--.+++.+.+.|+.. ..--+.|+.+|.+.++.++-.+..+....... .-....+..+.+.+-.++|.-+
T Consensus 409 daq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred CHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 6666767777788888887642 33345678888888888877777665552111 1133334444444444444433
No 307
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.17 E-value=14 Score=33.59 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=50.6
Q ss_pred CcHHHHHHHHHHhhHC--CCCcChHH---HHHHHHHHHhcCCHHHHHHHHHhC---CCCCCCHHHHHH---H--HHHHHh
Q 038516 534 GLVERGKILWNQMKEH--SLIPGHKH---YSCMVSLLSRAGLLDEAENLIAES---PYSEIRIELWRT---L--LSTCVA 600 (708)
Q Consensus 534 ~~~~~a~~~~~~~~~~--~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~---l--~~~~~~ 600 (708)
.+++.|+..|+..-+- |-..+... +--....-...+++.+|.++|++. ... .+..-|.. + ...|.-
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~-n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD-NNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHhHHHHHHHHHHHHhH
Confidence 4555555555555432 22222222 222334445678889999998886 211 12222221 1 222433
Q ss_pred -cCCHHHHHHHHHHHHhcCCCCcchH
Q 038516 601 -KRNSRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 601 -~~~~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
..|.-.+...+++-.+++|.-....
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCcccccH
Confidence 3788888888999999999876653
No 308
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.11 E-value=8.3 Score=33.45 Aligned_cols=135 Identities=11% Similarity=0.030 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCC--ChhHHHHHhccC
Q 038516 99 TFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCG--DFESAKRIFGLI 176 (708)
Q Consensus 99 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~ 176 (708)
.++.++.+.+.+++|+...+..+++.+.+.|.+.. +.+++..++-+|.......+-.+.... -..-|.+++.++
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 35666677778888888899999999988887644 445566676555554443332222211 123334444443
Q ss_pred CCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 038516 177 GDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS 245 (708)
Q Consensus 177 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 245 (708)
. ..+..++..+...|++-+|+++.+..... +......++.+..+.+|...--.++.-....
T Consensus 89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3 34566778888899999999988775322 2233455667777777666555555555443
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.96 E-value=1.3 Score=29.77 Aligned_cols=36 Identities=8% Similarity=0.102 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
+-.+.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 344566788999999999999999999999876433
No 310
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.71 E-value=0.86 Score=27.06 Aligned_cols=32 Identities=34% Similarity=0.504 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD 519 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 519 (708)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4567777788888888888888888877 3554
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.63 E-value=0.71 Score=27.07 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=11.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 596 STCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 596 ~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
.++...|+.++|...++++++..|+
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3334444444444444444444443
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.98 E-value=4.5 Score=35.84 Aligned_cols=93 Identities=16% Similarity=0.100 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHhhHC---CCCcC----hHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI--TFLSLLSACSHSGLVERGKILWNQMKEH---SLIPG----HKH 557 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~----~~~ 557 (708)
.+..+...|++.|+.+.|++.|.++.+....|... .+..++..+...+++..+...+.++... |-.++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455556666666666666666666543333322 2444555555566666666555555433 11111 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
|..|. +...|++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 33222 33467788877777665
No 313
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.97 E-value=71 Score=39.85 Aligned_cols=65 Identities=9% Similarity=-0.078 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
-..+|-.....++..|.++.|..+.-.+.+.. -+.++.-.+..++..|+-..|..+++.-.+.+.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 36789999999999999999999988887776 466788999999999999999999998776543
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.86 E-value=0.75 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+|..+|.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998765
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.63 E-value=29 Score=34.93 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE----DGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.....|..+...+++.|+++.|...+.++....+. .+.....-+++++..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667888999999999999999999999886522 4556677799999999999999998877763
No 316
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.37 E-value=5.2 Score=38.80 Aligned_cols=51 Identities=4% Similarity=-0.030 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHhcc--cc----chHHHHHHHHHHHHhCC
Q 038516 96 AHLTFRLIDQMEFECLRPNGLTFTSLAQAVSL--LE----DQLMGSLLHAQVIKYGS 146 (708)
Q Consensus 96 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~ 146 (708)
++..+.+++.|.+.|.+-+..+|.+.+-.... .. ....+..+++.|++...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence 45677888888888888887777664433332 11 34456777777777653
No 317
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.90 E-value=10 Score=32.94 Aligned_cols=133 Identities=11% Similarity=0.127 Sum_probs=81.6
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccC--CChHHHHHHHhccC
Q 038516 201 LSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKC--SDTQTAFSVFTRIE 278 (708)
Q Consensus 201 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~ 278 (708)
++.++.+.+.++.|+...+..+++.+.+.|++... ..++..++-+|.......+-.+... .-..-+..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 56677777889999999999999999999986544 4445555555554433333222211 11344555555553
Q ss_pred CCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHH
Q 038516 279 NPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIK 346 (708)
Q Consensus 279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 346 (708)
..+..++..+...|++-+|+++.+..... +......++.+....+|...-..+++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24667778889999999999998875332 112223455555555555554455544444
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.72 E-value=0.55 Score=27.57 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 624 THILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998764
No 319
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.50 E-value=0.64 Score=27.80 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAE 575 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~ 575 (708)
...|..|+..|...|++++|+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhc
Confidence 455555555555555555553
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.31 E-value=0.8 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=22.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.++..|+.+|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3578899999999999999999888754
No 321
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.02 E-value=19 Score=31.11 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=12.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 624 THILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
....|+-+-++.|++.+|.+.|..+
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHH
Confidence 3444444445555555555555444
No 322
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.86 E-value=6.8 Score=39.42 Aligned_cols=91 Identities=16% Similarity=0.076 Sum_probs=50.0
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
+...|+++.+...+...... +.....+..++++.+...|++++|..+-.-| ..+-.++++...........|-++++.
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 44566666666655554432 2223344555666666666666666666555 222234555544444455556666666
Q ss_pred HHHHHHHhcCCCC
Q 038516 609 QAAEQVLRLDPED 621 (708)
Q Consensus 609 ~~~~~~~~~~p~~ 621 (708)
-.+++++.++|..
T Consensus 412 ~~wk~~~~~~~~~ 424 (831)
T PRK15180 412 HYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccCChh
Confidence 6666666666543
No 323
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.80 E-value=50 Score=35.70 Aligned_cols=146 Identities=11% Similarity=0.053 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH---Hh----cCCHH
Q 038516 500 MAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL---SR----AGLLD 572 (708)
Q Consensus 500 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~ 572 (708)
+...|..++++..+.| .|-..--...+..+.. ++++.+.-.+..+.+.|.......-..+.... .. ..+.+
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~ 456 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE 456 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence 5666777777777765 3332222222333333 55555555555555543332211111111111 11 12445
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc---CCchHHHHHH
Q 038516 573 EAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT---GRWDCVAKMR 645 (708)
Q Consensus 573 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~eA~~~~ 645 (708)
.+..++.+.... .+......+...|.. ..+.+.|...+.++.... +.....|+..+..- .++..|.+++
T Consensus 457 ~~~~~~~~a~~~-g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 457 RAFSLYSRAAAQ-GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred HHHHHHHHHHhc-cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 566666666444 345555555544433 336777777777776665 55666777766552 1267777777
Q ss_pred HHHhcC
Q 038516 646 RKMKGS 651 (708)
Q Consensus 646 ~~~~~~ 651 (708)
++..+.
T Consensus 533 ~~~~~~ 538 (552)
T KOG1550|consen 533 DQASEE 538 (552)
T ss_pred HHHHhc
Confidence 776553
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.76 E-value=3.3 Score=39.26 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
++..++..+...|+++.+...+++. ...|-+...|..++.+|...|+...|+..|+++..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444444455555555554444444 22223444455555555555555555555444443
No 325
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.62 E-value=55 Score=35.93 Aligned_cols=17 Identities=12% Similarity=0.315 Sum_probs=12.7
Q ss_pred HHhcCCchHHHHHHHHH
Q 038516 632 YAATGRWDCVAKMRRKM 648 (708)
Q Consensus 632 ~~~~g~~~eA~~~~~~~ 648 (708)
+...|+|++|.+.++++
T Consensus 515 ~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 56789999998888765
No 326
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.54 E-value=19 Score=31.87 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=63.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-----HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS-----LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL 565 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 565 (708)
+...+...|++++|...++..... |....+.. |.+.....|.+++|+..++.....+..+ .....-++.+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHH
Confidence 345678889999999999988863 33333333 3446778899999999998876644322 2233456889
Q ss_pred HhcCCHHHHHHHHHhCCCC
Q 038516 566 SRAGLLDEAENLIAESPYS 584 (708)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~ 584 (708)
...|+-++|..-|++....
T Consensus 170 l~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 170 LAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHcCchHHHHHHHHHHHHc
Confidence 9999999999999887443
No 327
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.09 E-value=59 Score=35.80 Aligned_cols=92 Identities=12% Similarity=-0.134 Sum_probs=56.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHhcCCc
Q 038516 562 VSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL---DPEDGTTHILLSNLYAATGRW 638 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~ 638 (708)
+..+...|+..+|...+..+... .+......+.......|..+.++....+.... +-..+..|......+...-..
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 45667789999998888776444 45556666666667788888888877654331 112233455566666666666
Q ss_pred hHHHHHHHHHhcCCCc
Q 038516 639 DCVAKMRRKMKGSMLG 654 (708)
Q Consensus 639 ~eA~~~~~~~~~~~~~ 654 (708)
+.+.-.---..++++.
T Consensus 493 ~~~lv~ai~rqES~f~ 508 (644)
T PRK11619 493 PQSYAMAIARQESAWN 508 (644)
T ss_pred CHHHHHHHHHHhcCCC
Confidence 6665432223344443
No 328
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.05 E-value=1.4 Score=25.08 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=12.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 593 TLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
.++..+...|+++.|...++++++.+|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 334444444445555555544444444
No 329
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=85.99 E-value=22 Score=32.13 Aligned_cols=127 Identities=16% Similarity=0.090 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCcChHHHHHHHHH
Q 038516 488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH--SLIPGHKHYSCMVSL 564 (708)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~ 564 (708)
.+.-+..+.+.+...+++...++-++. +| |..+-..++..++-.|++++|..-++-.... ...+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445566777888899999998888876 45 5666777888999999999998888777653 223334555555433
Q ss_pred HHhcCCHHHHHH-HHHhC--CC-CC-CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 565 LSRAGLLDEAEN-LIAES--PY-SE-IRIELWRTLLSTCV--AKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 565 ~~~~g~~~~A~~-~~~~~--~~-~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
+.+.. +|.-- |. .. |.+.-...++.+.. ..|.-+.+...-+.+++.-|....
T Consensus 82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 23332 23221 21 11 44444455555543 344566677777788887776554
No 330
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.87 E-value=59 Score=35.65 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=24.6
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC
Q 038516 289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA 330 (708)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 330 (708)
...+.-.|+++.|++.+.... ....|...+...+..+.-
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~---~~~~dAVH~AIaL~~~gL 303 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNE---FNRVDAVHFAIALAYYGL 303 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhHHHHHHHHHhhc---cCcccHHHHHHHHHHcCC
Confidence 345566899999999888722 456677777777765543
No 331
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.82 E-value=16 Score=30.79 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=38.4
Q ss_pred ccCcHHHHHHHHHHhhHCCCCcC---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 038516 532 HSGLVERGKILWNQMKEHSLIPG---HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTC 598 (708)
Q Consensus 532 ~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 598 (708)
..++.+++..+++.|.- +.|+ ..++. +..+...|+|.+|..++++.....+....-..|+..|
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 36777777777777765 4444 33332 3457778888888888888865534433333444444
No 332
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.76 E-value=59 Score=35.49 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=31.0
Q ss_pred hhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchH
Q 038516 252 PLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEK 300 (708)
Q Consensus 252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 300 (708)
.+...+++.+...|++++|-...-.|...+..-|...+..+...++...
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 3455566666666777777777666666666666666666666555443
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.75 E-value=1.5 Score=27.97 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=22.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 626 ILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 626 ~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..|+.+|.+.|+.+.|+++++.....
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 46889999999999999999988754
No 334
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.70 E-value=7.2 Score=33.96 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 604 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+++|...|+++++.+|++......|-- ...|-++..++.+++.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~-------~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEM-------AAKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHH-------HHTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH-------HHhhHHHHHHHHHHHh
Confidence 567888899999999998775555532 2345555555555543
No 335
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.24 E-value=8.9 Score=36.45 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=64.9
Q ss_pred CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-C------C--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038516 449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-H------P--DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD 519 (708)
Q Consensus 449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 519 (708)
|.+.+..+...++..-....+++.++..+-++. . + ...+|-.+ + -.=++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccc
Confidence 444445555555555555667777777665553 1 1 22233222 2 23467788888888888888899
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516 520 EITFLSLLSACSHSGLVERGKILWNQMKEH 549 (708)
Q Consensus 520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 549 (708)
..+++.++..+.+.+++.+|.++...|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999988888888887777654
No 336
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=85.24 E-value=0.96 Score=36.62 Aligned_cols=27 Identities=48% Similarity=0.800 Sum_probs=22.0
Q ss_pred ceeEEEecCeEEEEEeCCCCCcchHHHHHHH
Q 038516 658 GLSWIEAKNNVHVFSSGDQSHPKIDDAQAEL 688 (708)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 688 (708)
|+||+++ |.|++||.+||+...+.+.+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~ 28 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMK 28 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHH
Confidence 6889977 99999999999986555533
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.21 E-value=10 Score=33.86 Aligned_cols=76 Identities=24% Similarity=0.193 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHhCCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCc
Q 038516 565 LSRAGLLDEAENLIAESPYS-E-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE----DGTTHILLSNLYAATGRW 638 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~ 638 (708)
..+.|+ ++|.+.|-.+... . .++.... .+..|....|.+++.+++-+++++.+. |+..+..|+.+|.++|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445565 5666666555222 1 2444444 444555578999999999999987544 467788999999999999
Q ss_pred hHHH
Q 038516 639 DCVA 642 (708)
Q Consensus 639 ~eA~ 642 (708)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.15 E-value=30 Score=31.64 Aligned_cols=90 Identities=9% Similarity=-0.030 Sum_probs=50.1
Q ss_pred HHHHHHhc-CCHHHHHHHHHhCC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH------
Q 038516 561 MVSLLSRA-GLLDEAENLIAESP----YSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI------ 626 (708)
Q Consensus 561 l~~~~~~~-g~~~~A~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~------ 626 (708)
+...|... .+++.|+..|+.+. .... ....+......-...+++.+|..+|+++....-+++..-.
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 44555544 56666666666651 1101 1223333344445688999999999999887766654421
Q ss_pred -HHHHHHHhcCCchHHHHHHHHHhc
Q 038516 627 -LLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 627 -~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.-+-++...++.-.+...+++-.+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHh
Confidence 222233333555555555555444
No 339
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.00 E-value=17 Score=35.12 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 556 KHYSCMVSLLSRAGLLDEAENLIAES-----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
.+|.-=++-|.+..++..|...|.+. +....+...|..-..+-...||+..|+.-+.+++.++|.+.-+|..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 34555567788999999999999876 2221234556666666667899999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHH
Q 038516 631 LYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 631 ~~~~~g~~~eA~~~~~~~ 648 (708)
++....++++|....+..
T Consensus 162 c~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999977777666544
No 340
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.88 E-value=1.8 Score=36.88 Aligned_cols=52 Identities=12% Similarity=0.023 Sum_probs=23.5
Q ss_pred HHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 038516 188 ILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIH 239 (708)
Q Consensus 188 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (708)
|..+.+.+.++....+++.+...+..-+....+.++..|++.++.+....++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 4444444555555555555554433333444455555555554444444333
No 341
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.87 E-value=11 Score=33.42 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcch----H
Q 038516 556 KHYSCMVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD--PEDGTT----H 625 (708)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~----~ 625 (708)
..+..+++.|.+.|+.++|.+.+.++...-. -...+-.++..+...+|+..+...+.++..+- +++... -
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455556666666666666666666522211 12334444455555666666666655554432 111111 1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHH
Q 038516 626 ILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 626 ~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
..-|-.+...|+|.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 12233455567888888777533
No 342
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.80 E-value=3.2 Score=31.78 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..+++.++.+|++......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4456666777777777777777777777777777776666554
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.70 E-value=66 Score=35.14 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=23.8
Q ss_pred hHHHHHHHhhHhcCCHHHHHHHHhhCCCCCh
Q 038516 455 SVCGSLVDMYAKNGDLRAAESIFSQVLHPDL 485 (708)
Q Consensus 455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 485 (708)
.+...|+..|...+++++|..++-...++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3444588899999999999998887765543
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.38 E-value=3.1 Score=37.09 Aligned_cols=111 Identities=13% Similarity=0.011 Sum_probs=71.2
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIE-LWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 606 (708)
.|-..|-+.-|.--|..... +.|+ +.+||.|+--+...|+++.|.+.|+..-...|... ....-+-++.--|+++.
T Consensus 74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 45666777777777776665 7776 67788888888889999999999888743323321 11111222233578888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhc--CCchHHHHH
Q 038516 607 VIQAAEQVLRLDPEDGTTHILLSNLYAAT--GRWDCVAKM 644 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~eA~~~ 644 (708)
|.+-+.+.-+-+|++|- .. .|+|... -+..+|..-
T Consensus 152 Aq~d~~~fYQ~D~~DPf--R~-LWLYl~E~k~dP~~A~tn 188 (297)
T COG4785 152 AQDDLLAFYQDDPNDPF--RS-LWLYLNEQKLDPKQAKTN 188 (297)
T ss_pred hHHHHHHHHhcCCCChH--HH-HHHHHHHhhCCHHHHHHH
Confidence 98888888888888863 22 2444443 344455543
No 345
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.22 E-value=5.8 Score=36.36 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCHHH-------HHHHHHHHHhcCC--C----CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 588 IELWRTLLSTCVAKRNSRM-------VIQAAEQVLRLDP--E----DGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 588 ~~~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..++..+.|.|+..|+.+. |...|+++.+.+. . .......+|.++.+.|++++|.+.|.++...
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3456667777777777444 4444555554332 2 2345778999999999999999999988764
No 346
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.91 E-value=11 Score=29.11 Aligned_cols=86 Identities=19% Similarity=0.167 Sum_probs=57.3
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHh
Q 038516 130 DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVG 209 (708)
Q Consensus 130 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 209 (708)
..++|..+-+++...+-. ...+--.-++.+...|++++|..+.+.+..||...|-+|-.. +.|-.+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 345666666666555422 333334445567788999999999999998999988877553 56666767777777776
Q ss_pred CCCCCCcchH
Q 038516 210 SGVNPTQFSY 219 (708)
Q Consensus 210 ~g~~p~~~~~ 219 (708)
.| .|...+|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 65 3444344
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.53 E-value=8.2 Score=34.41 Aligned_cols=42 Identities=12% Similarity=-0.030 Sum_probs=18.0
Q ss_pred cCcHHHHHHHHHHhhHC---CCCcChHHHHHHHHHHHhcCCHHHH
Q 038516 533 SGLVERGKILWNQMKEH---SLIPGHKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 574 (708)
..+.+++..++-+..+. +-.+++..+.+|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444444332 2233444444444444444444443
No 348
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.17 E-value=2.3 Score=42.89 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=64.3
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 038516 563 SLLSRAGLLDEAENLIAESPYSEIRIEL-WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV 641 (708)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 641 (708)
+.+...+.++.|..++.++-...|+-.+ +..-..++.+.+++..|+.-+.++++++|.....|..-|.++...+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 4455666777777777776433354333 333335677788888888888888888888888888888888888888888
Q ss_pred HHHHHHHhc
Q 038516 642 AKMRRKMKG 650 (708)
Q Consensus 642 ~~~~~~~~~ 650 (708)
...++....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 888886654
No 349
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.84 E-value=47 Score=32.08 Aligned_cols=21 Identities=5% Similarity=-0.107 Sum_probs=16.0
Q ss_pred HHHHHhcCCchHHHHHHHHHh
Q 038516 629 SNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 629 ~~~~~~~g~~~eA~~~~~~~~ 649 (708)
+..+++.++|++|.+.++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 556777889999998887543
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.83 E-value=20 Score=27.72 Aligned_cols=60 Identities=23% Similarity=0.348 Sum_probs=42.9
Q ss_pred HhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH
Q 038516 462 DMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFL 524 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 524 (708)
..+...|++++|..+.+....||...|-+|-. .+.|-.+++..-+.+|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567888888888888888888888876643 45677777777777777766 55555554
No 351
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.35 E-value=61 Score=32.99 Aligned_cols=52 Identities=12% Similarity=-0.010 Sum_probs=25.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHh--ccCcHHHHHHHHHHhhH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEI--TFLSLLSACS--HSGLVERGKILWNQMKE 548 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 548 (708)
.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666666666654 444333 2223333332 23455566666655544
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.24 E-value=79 Score=34.22 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHH--HHHh-hHhcCCHHHHHHHHhhC
Q 038516 435 LKQGEMIHSQAEKTGHGVEMSVCGS--LVDM-YAKNGDLRAAESIFSQV 480 (708)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~g~~~~A~~~~~~~ 480 (708)
...+..+++...+.|... ...... ...+ +....+.+.|...|+.+
T Consensus 228 ~~~a~~~~~~~a~~g~~~-a~~~~g~~y~~G~~g~~~d~e~a~~~l~~a 275 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSE-AQYALGICYLAGTYGVTQDLESAIEYLKLA 275 (552)
T ss_pred hhHHHHHHHHHHhhcchH-HHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 455666666666655221 111111 1112 33445566666655544
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.49 E-value=3.9 Score=25.42 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666777777777777777776654
No 354
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.01 E-value=65 Score=32.46 Aligned_cols=53 Identities=4% Similarity=-0.090 Sum_probs=26.3
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS-RAGLLDEAENLIAES 581 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 581 (708)
.+.+.|-+..|.++.+-+...+..-|+...-.+++.|. ++++++--.++++..
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 45556666666666666655322212333333444443 555555555555543
No 355
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.42 E-value=19 Score=27.94 Aligned_cols=58 Identities=14% Similarity=0.178 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHH
Q 038516 503 EAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMV 562 (708)
Q Consensus 503 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~ 562 (708)
+..+-++.+....+-|+.......+.+|.+.+++..|.++|+.++.+ |. ....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence 45566666666777888888888888888888888888888887764 32 222565554
No 356
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.25 E-value=43 Score=31.91 Aligned_cols=64 Identities=8% Similarity=-0.010 Sum_probs=35.5
Q ss_pred CCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh-CCCCChhhHHHHHHhcccCCChHHHHHHH
Q 038516 211 GVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS-NTQVDLPLENALLDMYSKCSDTQTAFSVF 274 (708)
Q Consensus 211 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 274 (708)
|..++..+...++..++..+++..-.++++..... +...|...|..+++.....|+..-..++.
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34555566666666666666666666666555444 34445555555555555555554444443
No 357
>PRK12798 chemotaxis protein; Reviewed
Probab=79.82 E-value=72 Score=32.24 Aligned_cols=205 Identities=13% Similarity=0.134 Sum_probs=132.0
Q ss_pred cCCHHHHHHHHhhCC----CCChHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCChH----HHHHHHHHHhccCcHH
Q 038516 467 NGDLRAAESIFSQVL----HPDLKCWNALLGGY-SHYGMAEEAFMVFEVILEHGLRPDEI----TFLSLLSACSHSGLVE 537 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~ 537 (708)
.|+.++|.+.+..+. .+....|-.|+.+- ....++.+|+.+|+...- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 688999999998885 35566777777664 445689999999999876 356432 2334444667889999
Q ss_pred HHHHHHHHhhHC-CCCcChHH-HHHHHHHHHhcC---CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 538 RGKILWNQMKEH-SLIPGHKH-YSCMVSLLSRAG---LLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 538 ~a~~~~~~~~~~-~~~p~~~~-~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
++..+-...... ...|-... +..++..+.+.+ ..+.-..++..|... ....+|..+...-...|+.+.|....+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~-~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPE-RQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCch-hHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888776666554 44443322 223333444333 344555556666433 346678888888888999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHh-----cCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHH
Q 038516 613 QVLRLDPEDGTTHILLSNLYAA-----TGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAE 687 (708)
Q Consensus 613 ~~~~~~p~~~~~~~~l~~~~~~-----~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (708)
++..+.+. ...-...+.+|.. ..+.++|.+.+..+-... -+|....+.+-
T Consensus 282 ~A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~------------------------L~~~Dr~Ll~A 336 (421)
T PRK12798 282 RALKLADP-DSADAARARLYRGAALVASDDAESALEELSQIDRDK------------------------LSERDRALLEA 336 (421)
T ss_pred HHHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhh------------------------CChhhHHHHHH
Confidence 99998743 3334444555544 356777776665443322 25666666666
Q ss_pred HHHHHHHHHhhh
Q 038516 688 LHRLRGNMRKLV 699 (708)
Q Consensus 688 l~~l~~~~~~~~ 699 (708)
-..+-.++.+..
T Consensus 337 A~~va~~V~~~p 348 (421)
T PRK12798 337 ARSVARQVRRAP 348 (421)
T ss_pred HHHHHHHHhcCc
Confidence 666666665543
No 358
>PRK10941 hypothetical protein; Provisional
Probab=79.77 E-value=15 Score=34.99 Aligned_cols=68 Identities=9% Similarity=-0.012 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
.+.+-.+|.+.++++.|+.+.+.+ ...|.++.-++.-+-.|.+.|....|..-++..++..|+++.+-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 344567888999999999999988 44445677888888889999999999999999999999988743
No 359
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.68 E-value=14 Score=35.19 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=70.0
Q ss_pred hCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC-C------CcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc
Q 038516 144 YGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD-K------DAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ 216 (708)
Q Consensus 144 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 216 (708)
.|.+....+...++..-....+++.+...+-.+.. | +.. -.+.++.+ -.-++++++.++..=..-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 34455555666666666667778888777655543 2 222 22233333 344677888888888888999999
Q ss_pred chHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 038516 217 FSYSMLLNACSRMGNFVCGKVIHARVIISN 246 (708)
Q Consensus 217 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 246 (708)
.+++.+|+.+.+.++...|..+.-.|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999988888877776553
No 360
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.36 E-value=7.6 Score=34.86 Aligned_cols=65 Identities=14% Similarity=0.072 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 559 SCMVSLLSRAGLLDEAENLIAE-SPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
+.-+..+.+.+.+.+|+...+. ...+|.+...-..+...++..|++++|..-++-+-+++|+...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 3445677788888898887655 3555456666777778888899999999999999899888643
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.87 E-value=30 Score=28.58 Aligned_cols=65 Identities=9% Similarity=0.006 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHhccC---cHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 517 RPDEITFLSLLSACSHSG---LVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 517 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
.+...+-..+..++.++. ++.+.+.+++.+.+. .-.-.......|.-++.|.|++++++++++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 445555444555555554 455667777777652 11112344445666777888888888777766
No 362
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=78.08 E-value=8.2 Score=40.02 Aligned_cols=104 Identities=14% Similarity=0.080 Sum_probs=74.6
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
+...|+...|...+.......-.-.......|++.+...|...+|-.++.+. ......+-.+..++.++....|++.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 4456888888887777664321112334556778888888888888887665 222245667778888888899999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
+.++++++++|+++..-..|-.+-+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999987776654433
No 363
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.07 E-value=4.5 Score=22.26 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 038516 559 SCMVSLLSRAGLLDEAENLIA 579 (708)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~ 579 (708)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666554
No 364
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.67 E-value=19 Score=33.93 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEE
Q 038516 593 TLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFS 672 (708)
Q Consensus 593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (708)
.+=..+...++.+.|....++.+.++|+++.-+.--|-+|.+.|-+.-|+.-+....+.-+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P------------------- 246 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP------------------- 246 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC-------------------
Confidence 3334577789999999999999999999998888899999999999999988887555433
Q ss_pred eCCCCCcchHHHHHHHHHHHH
Q 038516 673 SGDQSHPKIDDAQAELHRLRG 693 (708)
Q Consensus 673 ~~~~~~~~~~~~~~~l~~l~~ 693 (708)
.-|..+-|...+.++++
T Consensus 247 ----~~~~a~~ir~~l~~l~~ 263 (269)
T COG2912 247 ----DDPIAEMIRAQLLELRQ 263 (269)
T ss_pred ----CchHHHHHHHHHHHHHH
Confidence 24666777777777763
No 365
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=77.65 E-value=30 Score=27.78 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=20.9
Q ss_pred hcCCCCcchHH----HHHHHHHhcCCchHHHHHHHHH
Q 038516 616 RLDPEDGTTHI----LLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 616 ~~~p~~~~~~~----~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
+++.+....|. ..+.++...|+.+||...|+..
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 45555544444 4456777889999999888754
No 366
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.59 E-value=4.2 Score=22.88 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..+..++.+|...|++++|...++...+.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35788999999999999999999877653
No 367
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.33 E-value=36 Score=35.80 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 038516 467 NGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQM 546 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 546 (708)
.|+++.|..++-.++++ .-+.++.-+.++|-.++|+++ .||..-. .....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh
Confidence 45666666655554422 223344445555555555543 3332211 12233567777776665544
Q ss_pred hHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 547 KEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 547 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
. +..-|..|.++....|++..|.+.+.++.. |..|+-.+...|+.+.-..+.+.+.+..-+|
T Consensus 664 ~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N----- 725 (794)
T KOG0276|consen 664 N------SEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGKNN----- 725 (794)
T ss_pred c------chHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhcccc-----
Confidence 2 244577777777788888888777766532 3445555556666665444444443333333
Q ss_pred HHHHHHHhcCCchHHHHHHH
Q 038516 627 LLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 627 ~l~~~~~~~g~~~eA~~~~~ 646 (708)
.-..+|...|+++++.+++.
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 22335666777777776665
No 368
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.33 E-value=79 Score=30.76 Aligned_cols=146 Identities=9% Similarity=-0.060 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc----C--
Q 038516 500 MAEEAFMVFEVILEHGLRPDEITFLSLLSACSH----SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA----G-- 569 (708)
Q Consensus 500 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g-- 569 (708)
+..+|..+|+.+.+.|..+ ....|...+.. ..+..+|..+|+++.+.|..+.......+...|... +
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 4666777777666655322 11122222222 336777777777777766554322233344444432 1
Q ss_pred -CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 038516 570 -LLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG-------- 636 (708)
Q Consensus 570 -~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 636 (708)
+...|...+.++... .++.....+...|.. ..|.++|...|+++.+... ......++ ++...|
T Consensus 169 ~~~~~A~~~~~~aa~~-~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 169 YDDKKALYLYRKAAEL-GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred HHHHhHHHHHHHHHHh-cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223677777776444 344555555544433 3378888888888888776 44555666 555555
Q ss_pred -------CchHHHHHHHHHhcCC
Q 038516 637 -------RWDCVAKMRRKMKGSM 652 (708)
Q Consensus 637 -------~~~eA~~~~~~~~~~~ 652 (708)
+...|...+......+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcC
Confidence 6666777776665544
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.21 E-value=6 Score=28.94 Aligned_cols=46 Identities=9% Similarity=0.085 Sum_probs=34.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHH---HHHHHHHhcCCchHHHHHH
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGTTHI---LLSNLYAATGRWDCVAKMR 645 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~eA~~~~ 645 (708)
..++.+.|+..++++++..++.+.-+. .|..+|...|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888777666555 4455677888888887763
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.72 E-value=10 Score=35.75 Aligned_cols=59 Identities=17% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
+......|...|.+.+|.++.++++.++|-+...+..|..+|...|+--+|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445668889999999999999999999999999999999999999888887777663
No 371
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.45 E-value=20 Score=27.53 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
|++.+..+.+.+|++.+|+..|+++++-+....+++...|-.+
T Consensus 40 P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 40 PEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 7888888888999999999999998887776655444445444
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.27 E-value=1.1e+02 Score=31.83 Aligned_cols=192 Identities=13% Similarity=0.104 Sum_probs=115.6
Q ss_pred CCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-HHHH
Q 038516 451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF-LSLL 527 (708)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll 527 (708)
..|....-+++..++......-.+.+..+|. ..+-..|..++..|... ..++-..+|+++.+.. -|...+ ..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 3444555566777776666666666666665 35666777788888877 5567778888888753 333333 3344
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcC------hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCCHHHHHHHHHHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPG------HKHYSCMVSLLSRAGLLDEAENLIAESPYS---EIRIELWRTLLSTC 598 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~ 598 (708)
.-|.+ ++.+.+..+|.++... +.|. .+.|..|.... ..+.+.-+.+..+.... +--...+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44444 7777777777777653 2221 22344333221 33555555555555221 12233444555566
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh--------------------cCCchHHHHHHHHHh
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA--------------------TGRWDCVAKMRRKMK 649 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~eA~~~~~~~~ 649 (708)
....|+++|.+++..+++.+..+..+...+..-+.. -.++-+|.--|++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 777888888888888888888877776666555444 345666766666653
No 373
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.50 E-value=32 Score=26.29 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCch-HHHHHHHHH
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED--GTTHILLSNLYAATGRWD-CVAKMRRKM 648 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-eA~~~~~~~ 648 (708)
.|....-.+...+...|+++.|...+-.+++.+|+. ......+..++...|.-+ -+.+..++|
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456777777788888899999999888888887664 556677777777777743 444555544
No 374
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=74.18 E-value=1.5e+02 Score=33.12 Aligned_cols=25 Identities=8% Similarity=0.056 Sum_probs=15.0
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhHC
Q 038516 525 SLLSACSHSGLVERGKILWNQMKEH 549 (708)
Q Consensus 525 ~ll~~~~~~~~~~~a~~~~~~~~~~ 549 (708)
.|.......|+.++|...+.++...
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4444555666666666666666554
No 375
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.86 E-value=23 Score=27.56 Aligned_cols=44 Identities=7% Similarity=0.043 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS 629 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 629 (708)
|++.+....+.+|++.+|+..|+++++-+.....+....|..+.
T Consensus 43 P~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 43 PEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred CChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 88899999999999999999999999988877666554565553
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.79 E-value=7.2 Score=22.39 Aligned_cols=29 Identities=10% Similarity=0.046 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 602 RNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56788889999999988888887776654
No 377
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=73.76 E-value=39 Score=26.04 Aligned_cols=60 Identities=13% Similarity=0.168 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHH
Q 038516 501 AEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMV 562 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~ 562 (708)
.-++.+-++.+....+-|+.......+.+|.+.+++..|.++|+..+.+ |. +...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 3456666777777778888888888888888888888888888877753 32 333555444
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.11 E-value=82 Score=29.50 Aligned_cols=236 Identities=13% Similarity=0.190 Sum_probs=126.6
Q ss_pred CChhHHHHHhhcCCC-------CEeeehhhHHHHhcCCChHHHHHHHHHHhH---CCC--ccCHHHHHHHHHHHhCcccH
Q 038516 368 DAESPQKVFMLIAEK-------DIVLWTEMIIGHSRMGDGECAIKLFCKMCR---EGL--KCDNFALSGALSACADLAIL 435 (708)
Q Consensus 368 ~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~~ 435 (708)
++++|..-|+.+.+- ...+...+|..+.+.+++++.++.+++|.. +.+ .-+....++++...+.+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455555555554331 112233466777777777777777776642 111 12334566666666655555
Q ss_pred HHHHHHHHHHH----H-hCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--------CCC-------hHHHHHHHHHH
Q 038516 436 KQGEMIHSQAE----K-TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--------HPD-------LKCWNALLGGY 495 (708)
Q Consensus 436 ~~a~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-------~~~~~~li~~~ 495 (708)
+....+++.-. + .+-..-..+-..|...|...|.+.+..+++.++. +.| ...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 55544444222 1 1112222333456777777788888888877662 111 33577777888
Q ss_pred HhcCChHHHHHHHHHHHHCC-CCCChHHHHHHHHHH-----hccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHH
Q 038516 496 SHYGMAEEAFMVFEVILEHG-LRPDEITFLSLLSAC-----SHSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVS 563 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~ 563 (708)
....+-.+...++++.+.-. --|... ...+++-| .+.|.+++|-.-|-++.+. |.+.. ..-|-.|++
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776522 123333 33444444 4567888876544444433 32221 223555667
Q ss_pred HHHhcCC----HHHHHHHHHhCCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 038516 564 LLSRAGL----LDEAENLIAESPYSEIRIE--LWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 564 ~~~~~g~----~~~A~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
.+.+.|- -.||. |.+ .+++ .+..++.+|.. ++..+-++++.
T Consensus 281 MLmkS~iNPFDsQEAK------PyK-NdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAK------PYK-NDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHcCCCCCcccccC------CCC-CCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 7766652 11111 333 3444 45667777654 45555444433
No 379
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=72.84 E-value=14 Score=22.44 Aligned_cols=30 Identities=17% Similarity=-0.022 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhcCCC
Q 038516 591 WRTLLSTCVAKRNSRMVIQA--AEQVLRLDPE 620 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~--~~~~~~~~p~ 620 (708)
|-.+...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44444555555666666666 3344444443
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.75 E-value=13 Score=27.34 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=24.7
Q ss_pred ccCcHHHHHHHHHHhhHCCCCc-C-hHHHHHHHHHHHhcCCHHHHHHH
Q 038516 532 HSGLVERGKILWNQMKEHSLIP-G-HKHYSCMVSLLSRAGLLDEAENL 577 (708)
Q Consensus 532 ~~~~~~~a~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~ 577 (708)
.....++|+..|+...+.-..| + ..++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655542222 1 33455566666666666666554
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.28 E-value=98 Score=29.57 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVL 615 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 615 (708)
++.....|..+|.+.+|.++.++. ...+.+...|..++..+...||--.+...+++..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444567888999999999999998 4444578889999999999999777777766543
No 382
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.52 E-value=14 Score=28.63 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=36.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCc---------chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDG---------TTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+.||+..|...+.+.++...... .+...++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 356777777777777665432221 2345678888999999999999887754
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.97 E-value=1.6e+02 Score=33.42 Aligned_cols=114 Identities=15% Similarity=0.122 Sum_probs=66.1
Q ss_pred chhhHHHHHHhccCChHHHHHHhhcCCCCC--c-----ccHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCCCCcchHH
Q 038516 49 YMYNNVLSMYGRCGSIRDARQVFDEIPKRS--L-----VSYNALIAAYSRDHDHA--HLTFRLIDQMEFECLRPNGLTFT 119 (708)
Q Consensus 49 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~-----~~~~~ll~~~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~ 119 (708)
.-|..|+..|...|..++|+++|.+..+.+ . ..+..++..+-..+. . +-.++.-.........-....|+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~-~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGA-ENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcc-cchhHHHHHhhhhhccCchhheeeee
Confidence 358899999999999999999998876422 1 123344544444444 3 44555544444332211112222
Q ss_pred H------------HHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhC
Q 038516 120 S------------LAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNC 163 (708)
Q Consensus 120 ~------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 163 (708)
. .+-.+........+..+++.+....-.++....+.++..|.+.
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 2 1112233344555666777777776667777778888777653
No 384
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.58 E-value=68 Score=32.94 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCce
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGL 659 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~ 659 (708)
+...-..++....++..+++-.+.+.....+.+.....-...++..|++..|.+++. ..++.++||.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g~ 274 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAGG 274 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccCc
Confidence 333444556667778888888888887777777777788999999999999987664 5667777763
No 385
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.42 E-value=57 Score=27.58 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=50.7
Q ss_pred HhHHHHHhHhCCChhHHHHHhccCCC---------CCcccHHHHHHHHhcCCC-hhHHHHHHHHHHhCCCCCCcchHHHH
Q 038516 153 QTSLLGMYSNCGDFESAKRIFGLIGD---------KDAVAWNSIILGNFKNDK-MKEGLSLFGAMVGSGVNPTQFSYSML 222 (708)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 222 (708)
.+.++.-.+..+++....++++.+.. .+...|+.++.+..+... --.+..+|.-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555555555555555554431 355677888887766555 34566777888777778888888888
Q ss_pred HHHHhccC
Q 038516 223 LNACSRMG 230 (708)
Q Consensus 223 l~~~~~~~ 230 (708)
+.++.+..
T Consensus 122 i~~~l~g~ 129 (145)
T PF13762_consen 122 IKAALRGY 129 (145)
T ss_pred HHHHHcCC
Confidence 88876653
No 386
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=68.39 E-value=11 Score=35.57 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=50.3
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516 565 LSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL 627 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 627 (708)
..+.|+.++|..+|+.+ ...+.++.++..++.....+++.-+|.++|-+++.++|.+..++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 45788999999999876 4443467777777777777889999999999999999999887553
No 387
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.43 E-value=89 Score=33.11 Aligned_cols=100 Identities=20% Similarity=0.093 Sum_probs=53.0
Q ss_pred HhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516 465 AKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 465 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
.+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |..|+-.+...|+.+....+-+
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3556666666554432 3455666677776777777766666665543 2334444555555544444444
Q ss_pred HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 545 QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
...+.|.. |.-.-+|...|+++++.+++.+-
T Consensus 717 ~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 44433321 11223455566666666666554
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.01 E-value=1.2e+02 Score=28.86 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=25.1
Q ss_pred HHHHhcCCChHHHHHHHHHHhHCCCccCHHHH
Q 038516 391 IIGHSRMGDGECAIKLFCKMCREGLKCDNFAL 422 (708)
Q Consensus 391 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~ 422 (708)
..-..+.+++++|+..+.++...|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 34456778899999999999999888776554
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.35 E-value=64 Score=27.30 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=42.4
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCC-----CCCcchHHHHHHHhccccc-hHHHHHHHHHHHHhCCCCchhHHhH
Q 038516 82 YNALIAAYSRDHDHAHLTFRLIDQMEFECL-----RPNGLTFTSLAQAVSLLED-QLMGSLLHAQVIKYGSSEDTCVQTS 155 (708)
Q Consensus 82 ~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 155 (708)
.|+++.-....+. ....+.+++.+..-.. ..+..+|.+++++.++... --.+..++..+.+.+.++++..|..
T Consensus 42 iN~iL~hl~~~~n-f~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQN-FSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccc-hHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 4555554444444 5555555555432100 2344556666666655544 3345556666666666666666666
Q ss_pred HHHHhHh
Q 038516 156 LLGMYSN 162 (708)
Q Consensus 156 li~~~~~ 162 (708)
+|+++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 6665544
No 390
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=66.30 E-value=45 Score=26.57 Aligned_cols=42 Identities=10% Similarity=0.220 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 606 MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
.+++.+.++..+.|+.+..+..|++-+...--|+++..--++
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~ 103 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKR 103 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 567778889999999877777777766555566666655443
No 391
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=65.70 E-value=50 Score=26.01 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=51.5
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHH
Q 038516 129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMV 208 (708)
Q Consensus 129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 208 (708)
...++|..+.+++...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356777888888877764 344444455666778899999966556666688888876654 46777788887777776
Q ss_pred hCC
Q 038516 209 GSG 211 (708)
Q Consensus 209 ~~g 211 (708)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 654
No 392
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.41 E-value=87 Score=28.97 Aligned_cols=84 Identities=11% Similarity=-0.030 Sum_probs=60.5
Q ss_pred hhHhcCCHHHHHHHHhhCC--CCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH-HHHHHHHhccCcHHH
Q 038516 463 MYAKNGDLRAAESIFSQVL--HPDL-KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF-LSLLSACSHSGLVER 538 (708)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~ 538 (708)
-|....+++.|+.-|.+.+ .|++ .-|+.-+..|.+..+++.+..--++.++ +.||.+-- ..+..++.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3555667888888777664 5666 4456677788888888888888888877 57876553 344446677788888
Q ss_pred HHHHHHHhhH
Q 038516 539 GKILWNQMKE 548 (708)
Q Consensus 539 a~~~~~~~~~ 548 (708)
|+..+.+..+
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 8888887744
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=65.33 E-value=2.2e+02 Score=31.38 Aligned_cols=49 Identities=12% Similarity=0.258 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHHhcC---CCCcc-hHH-----HHHHHHHhcCCchHHHHHHHHHh
Q 038516 601 KRNSRMVIQAAEQVLRLD---PEDGT-THI-----LLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~---p~~~~-~~~-----~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
.|+..+.......+...- |+... .|. .+...|...|+.++|.....+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 677777666655555432 33232 332 45556788899999988877654
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=64.74 E-value=1.2e+02 Score=29.50 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCCcchHH
Q 038516 605 RMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 605 ~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
..|++...++++.+|.-+....
T Consensus 379 ~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 379 INAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHHHHHHHHHhhcCCCCcHHHH
Confidence 3578888999999998877533
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.67 E-value=16 Score=23.46 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=14.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEH 514 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~ 514 (708)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666653
No 396
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=64.13 E-value=1.4e+02 Score=28.67 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=38.5
Q ss_pred CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC-----CCEeeehhhHHHHhcCCChHHHHHHH
Q 038516 349 YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE-----KDIVLWTEMIIGHSRMGDGECAIKLF 407 (708)
Q Consensus 349 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~A~~~~ 407 (708)
-.++..+...++..+++.+++.+-.++++.... .|...|..+|......|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 355666666677777777777777777765433 36667777777777777765444433
No 397
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.05 E-value=1.8e+02 Score=29.92 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=76.6
Q ss_pred ccccchHHHH-HHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHH
Q 038516 126 SLLEDQLMGS-LLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGL 201 (708)
Q Consensus 126 ~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 201 (708)
-..|++..|. ++++.++...-.|+....-+.| +...|+++.+.+.+..... ....+...+++.....|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456666554 4555555555556655444443 4567888888888765543 45566777888888888889998
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh
Q 038516 202 SLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDL 251 (708)
Q Consensus 202 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 251 (708)
.+-.-|+...++ +...........-..|-++++...|.++...+.+.+.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 888888776544 2222233333334556677777777777765544343
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.85 E-value=1.3e+02 Score=32.72 Aligned_cols=101 Identities=24% Similarity=0.308 Sum_probs=58.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHH---HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516 495 YSHYGMAEEAFMVFEVILEHGLRPDEIT---FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (708)
|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.+ .++...++-.- |+ .|-..+++.|.+
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~--~Fens~Elq~I----gm--------kLn~LlgrKG~l 360 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE--HFENSLELQQI----GM--------KLNSLLGRKGAL 360 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh--hccchHHHHHH----HH--------HHHHHhhccchH
Confidence 3344556678888888877 5776544 3334332211 12222221111 11 234567788888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 572 DEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
+.-.++++-.- .+.+-.-.+|+.+|.++.+.++++.|..-
T Consensus 361 eklq~YWdV~~-----------y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 361 EKLQEYWDVAT-----------YFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHHHHHhHHH-----------hhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 87777775542 22233346789999999999999988654
No 399
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=63.58 E-value=36 Score=28.66 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516 572 DEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD 639 (708)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 639 (708)
+.|.++++-|. ...............|++..|..+.+.++..+|++..+....+++|...|.-.
T Consensus 58 ~~A~~~v~l~G----G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG----GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 56666776663 23344445555677899999999999999999999999888888887766443
No 400
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=62.38 E-value=13 Score=33.81 Aligned_cols=60 Identities=25% Similarity=0.251 Sum_probs=41.0
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 564 LLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
.....|+.+.|.+++.++.. .+.....|-.+.....+.|+.+.|.+.+++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 34456777777777777632 2223555777777777788888888888888888877644
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.11 E-value=81 Score=24.93 Aligned_cols=79 Identities=22% Similarity=0.226 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+|- -.+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 34555555555544432 11122222233455667777773333333456666665543 2455666666666666655
Q ss_pred CC
Q 038516 514 HG 515 (708)
Q Consensus 514 ~g 515 (708)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 402
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.67 E-value=23 Score=33.68 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=43.8
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
..+.|+.++|..+++.++.+.|+++.++...|......++.-+|...+-++
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 456899999999999999999999999998888888788888887776544
No 403
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=60.37 E-value=1.7e+02 Score=28.27 Aligned_cols=241 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred CChhHHHHHHH--HHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHh
Q 038516 280 PDLVSWNSMIA--GYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGT 357 (708)
Q Consensus 280 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (708)
+....++-+|+ .|...+--++..+++.-+. +..++...-.+++.+ .+...|..|......
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llflk---~F~e~Er~KLA~~Ta---------------l~l~nGt~~~tvl~~ 170 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFLK---LFEENERKKLAMLTA---------------LLLSNGTLPATVLQS 170 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHHHHHH---------------HHHhCCCCCHHHHHH
Q ss_pred HHHHHHHhcCC-ChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc--
Q 038516 358 TLLNMYFKNGD-AESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI-- 434 (708)
Q Consensus 358 ~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-- 434 (708)
.+-+.+.+.|- ..-|.++|+..... ...+.+++.+.+.+.-+.-+++| +|+..+...+-..+...|-
T Consensus 171 L~~d~LVkeGi~l~F~~~lFk~~~~E--k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft~agL~e 240 (412)
T KOG2297|consen 171 LLNDNLVKEGIALSFAVKLFKEWLVE--KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFTDAGLKE 240 (412)
T ss_pred HHHhhHHHHhHHHHHHHHHHHHHHhh--ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHhHhhHHH
Q ss_pred ------------------------------HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCC
Q 038516 435 ------------------------------LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPD 484 (708)
Q Consensus 435 ------------------------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 484 (708)
+++.....++-.+.+--|++.+...+-++....+.+.+-.++..+-.-..
T Consensus 241 lvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalrh 320 (412)
T KOG2297|consen 241 LVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH 320 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHhcCChHHH---------------HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516 485 LKCWNALLGGYSHYGMAEEA---------------FMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKE 548 (708)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A---------------~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 548 (708)
..+|.-|+.+++..|+.+-. .+.|++....-.+.+..+=..++.-|-.......-..+++.|..
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll~KvQe~CYen~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~gh~~KGk~~Fleqmkk 399 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELLLKVQEYCYENIHFMKAFQKIVVLFYKADVLSEETILKWYKEGHVAKGKSVFLEQMKK 399 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccccccHHHHHHHHHH
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.32 E-value=3.1e+02 Score=31.35 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=21.8
Q ss_pred eehhhHHHHhcCCChHHHHHHHHHHhH
Q 038516 386 LWTEMIIGHSRMGDGECAIKLFCKMCR 412 (708)
Q Consensus 386 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 412 (708)
-|..|+..|...|+.++|+++|.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477788888888888888888888765
No 405
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=59.23 E-value=97 Score=28.69 Aligned_cols=106 Identities=16% Similarity=0.214 Sum_probs=55.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCC-CChH--HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLR-PDEI--TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLD 572 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~-p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 572 (708)
...|+++.|+++.+.+++.|+. |+.. ++-+++. ++....-....+.|...++.....+...-...
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~va--------eev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~---- 161 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVA--------EEVANAALKAASAGESVEPYFLRVFLDLTTEW---- 161 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHH--------HHHHHHHHHHHHcCCCCChHHHHHHHHHHhcC----
Confidence 4678899999999998888754 3321 1222211 22222222233334443433322221111111
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHhcCCCC
Q 038516 573 EAENLIAESPYSEIRIELWRTLLSTCV---------AKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 573 ~A~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
+|+.. .....+...+..+. ..++...|...++++++++|+-
T Consensus 162 -------dmpd~-vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 162 -------DMPDE-VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred -------CCChH-HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 22322 33445555555552 3457788999999999999874
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.83 E-value=18 Score=32.85 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=51.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLG 654 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 654 (708)
..+.+|.+.+.+++.+++++-|+....|..++....+.|+++.|.+.+++..+....
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 346789999999999999999999999999999999999999999999988776543
No 407
>PRK12798 chemotaxis protein; Reviewed
Probab=58.11 E-value=2.2e+02 Score=28.99 Aligned_cols=192 Identities=11% Similarity=0.043 Sum_probs=123.3
Q ss_pred HHHHhhHhcCCHHHHHHHHhhCCCCChHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH-HHhccCcH
Q 038516 459 SLVDMYAKNGDLRAAESIFSQVLHPDLKC-WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS-ACSHSGLV 536 (708)
Q Consensus 459 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~ 536 (708)
+.+-....-|+++-...++..-..++... ...-+.+|. .|+..++.+.|..+....+.+....+..|+. ......+.
T Consensus 86 Aa~iy~lSGGnP~vlr~L~~~d~~~~~d~~L~~g~laY~-~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 86 AALIYLLSGGNPATLRKLLARDKLGNFDQRLADGALAYL-SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHHhhHhcCCCHHHHHHHHHcCCCChhhHHHHHHHHHHH-cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 33334456677777777777655443321 112223343 5999999999999887766777777888777 45667789
Q ss_pred HHHHHHHHHhhHC--CCCcChHHHHHHHHHHHhcCCHHHHHHH----HHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516 537 ERGKILWNQMKEH--SLIPGHKHYSCMVSLLSRAGLLDEAENL----IAESPYSEIRIELWRTLLSTCVAKRNSRMVIQA 610 (708)
Q Consensus 537 ~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 610 (708)
.+|+++|+...-. |.-.......--+......|+.+++..+ +++....+.-...+..+..+..++++-..-..+
T Consensus 165 ~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l 244 (421)
T PRK12798 165 ATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARL 244 (421)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHH
Confidence 9999999988652 2222223333445566788998886654 555555533455566666666666654444444
Q ss_pred HHHHHhcCCCC-cchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 611 AEQVLRLDPED-GTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 611 ~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.+-+-.++|+. ...|..+++.-.-.|+.+-|...-++....
T Consensus 245 ~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 245 VEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 33334456653 356778888888899999998887777654
No 408
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=57.52 E-value=1.7e+02 Score=27.58 Aligned_cols=120 Identities=7% Similarity=0.032 Sum_probs=79.8
Q ss_pred HHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 571 LDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR-MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 571 ~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
+.+-++.+++. ...+.+..+|..--......|+.. .-..+.+.++..+.++--+|.+.-|++...+.|+.-..+...+
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~L 173 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADEL 173 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556666665 223246777776666666677777 7788889999999999999999999999999999999999988
Q ss_pred hcCCCccCCceeEEEecCeEEEEEeCCCCC-cchHHHHHHHHHHHHHHHh
Q 038516 649 KGSMLGKEPGLSWIEAKNNVHVFSSGDQSH-PKIDDAQAELHRLRGNMRK 697 (708)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~ 697 (708)
.+..+........ ..|+...... -...++..++.-...+|.-
T Consensus 174 le~Di~NNSAWN~-------Ryfvi~~~~~~~~~~~le~El~yt~~~I~~ 216 (318)
T KOG0530|consen 174 LEEDIRNNSAWNQ-------RYFVITNTKGVISKAELERELNYTKDKILL 216 (318)
T ss_pred HHHhhhccchhhe-------eeEEEEeccCCccHHHHHHHHHHHHHHHHh
Confidence 8877664443211 1232222222 2335566666655555543
No 409
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.39 E-value=2.4e+02 Score=28.53 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=79.0
Q ss_pred hHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCChHHHH--------HHHHHHhccCcHHHHHHHHHHhhHC-CCCc
Q 038516 485 LKCWNALLGGY--SHYGMAEEAFMVFEVILEHGLRPDEITFL--------SLLSACSHSGLVERGKILWNQMKEH-SLIP 553 (708)
Q Consensus 485 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--------~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p 553 (708)
+..|-.++..+ ...+++.+|..+-+.....-..-|..++. .+-.++...|+...-..++...... .+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 33444444332 33466777777666655432222333333 2333455566666655555555433 2222
Q ss_pred C----hHHHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 554 G----HKHYSCMVSLLSRAGLLDEAENLIAESP--YSEIRIELWRTLL----STCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 554 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
+ ....++|++.|...+.++.|.+++.+.+ .. .+..-|...+ ..-..++++..|.+.+-.++.+.|.+..
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~-~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~a 282 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEA-ASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAA 282 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccc-cccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhh
Confidence 2 4456777888888889999999988873 22 1222333222 2334578889999999888888887443
No 410
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=54.98 E-value=69 Score=24.21 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHH
Q 038516 28 ARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLT 99 (708)
Q Consensus 28 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 99 (708)
+.++++...+.|+- +..-.+.+-.+-...|+.+.|+++++.++ +....|...+.++-..|. -.-|
T Consensus 21 ~~~v~d~ll~~~il-----T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~-~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-----TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEH-HELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-----CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc-hhhh
Confidence 45677777777754 44444444333346688999999999998 888888999988888876 4433
No 411
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.77 E-value=4.1e+02 Score=31.06 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=22.5
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC
Q 038516 482 HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG 534 (708)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 534 (708)
.+|...-...+.++...|....+...+..+.+ .+|...-...+.++...+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAA 835 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcc
Confidence 34555555555555555554443333333333 234333333444444443
No 412
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=54.36 E-value=1.2e+02 Score=28.77 Aligned_cols=54 Identities=9% Similarity=-0.092 Sum_probs=23.5
Q ss_pred HHHHhcCCChHHHHHHHHHHhHC--CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHH
Q 038516 391 IIGHSRMGDGECAIKLFCKMCRE--GLKCDNFALSGALSACADLAILKQGEMIHSQAE 446 (708)
Q Consensus 391 i~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 446 (708)
|++++..++|.+++...-+--+. .++|.. ...-|--|++.+....+.++-....
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45566666666665544333221 122222 2222223445555555554444433
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.63 E-value=77 Score=27.91 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=27.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516 595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC 640 (708)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 640 (708)
...|.+.|.+++|.+++++... +|++.....-|..+-.+...+..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~ 162 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHP 162 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccH
Confidence 3457777777777777777777 77666654444444444333333
No 414
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=53.32 E-value=92 Score=32.84 Aligned_cols=133 Identities=16% Similarity=0.029 Sum_probs=85.9
Q ss_pred CCChHHHHHHHHHHhcc--CcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH-hcCCHHHHHHHHHhCCCCCCC--HHHH
Q 038516 517 RPDEITFLSLLSACSHS--GLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS-RAGLLDEAENLIAESPYSEIR--IELW 591 (708)
Q Consensus 517 ~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~--~~~~ 591 (708)
-|+..+..+++.-.... ..-+-|-.++-.|. ..+.|--...+ ++..|. ..|+...|...+..+-...|. ....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-~~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-KPNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-CCCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 35666655555433221 12233334444443 23334333333 233444 478999999998887322232 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 592 RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..|.....+.|-.-.|-.++.+++.+....+-++..+|++|....+.+.|++.|+.+.+.
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 455666667777777888999999999888889999999999999999999999987664
No 415
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=53.16 E-value=27 Score=33.28 Aligned_cols=77 Identities=16% Similarity=0.164 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 554 GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTL-LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
|+..|...+.-..+.|.+.+.-.++.++ ...|.+.++|-.- ..-+..++|.+.+..++.+.++++|++|..|....+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 3444444444444555666666666555 3333466777653 233567899999999999999999999998775543
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=52.78 E-value=3.4e+02 Score=29.58 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=30.0
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHH
Q 038516 270 AFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVI 345 (708)
Q Consensus 270 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 345 (708)
...++.+.+-.+...-.-++..|.+.|-.+.|.++.+.+-.. .....-|..-+..+.+.|+...+..+-+.+.
T Consensus 393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~---~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR---LLKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH----------------
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444445555566667777777777777777666544 1223445566666666666666555544444
No 417
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.78 E-value=46 Score=29.97 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=12.8
Q ss_pred CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 552 IPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
.|++.+|..++..+...|+.++|.+..+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 418
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.42 E-value=2.5e+02 Score=29.07 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=25.1
Q ss_pred HHHHHHHHhc---CCChhHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 038516 184 WNSIILGNFK---NDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNA 225 (708)
Q Consensus 184 ~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 225 (708)
+..++.++.+ .++++.|+..+..|.+.|..|....-..++.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3344444443 46788888888888887766664443333333
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.41 E-value=2.2e+02 Score=27.21 Aligned_cols=141 Identities=16% Similarity=0.062 Sum_probs=63.0
Q ss_pred HhcCCChhHHHHHH----HHHHhCCCCCCcchHHHHHHHHhccCChh-HHHHHHHHHHH---hC--CCCChhhHHHHHHh
Q 038516 191 NFKNDKMKEGLSLF----GAMVGSGVNPTQFSYSMLLNACSRMGNFV-CGKVIHARVII---SN--TQVDLPLENALLDM 260 (708)
Q Consensus 191 ~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~~---~~--~~~~~~~~~~l~~~ 260 (708)
+.+.|+...|-++- +-+.+.+.++|......++..+...+.-+ .-..+.+.+++ .+ ..-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 44555554444433 33333455555555555555544333211 22233333332 22 22366777888888
Q ss_pred cccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHH
Q 038516 261 YSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPL 340 (708)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 340 (708)
|.+.|++.+|+..|-.-..++...+..++......|...++ |...-..++ -+...+++..|...
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~---------------dlfi~RaVL-~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA---------------DLFIARAVL-QYLCLGNLRDANEL 163 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H---------------HHHHHHHHH-HHHHTTBHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch---------------hHHHHHHHH-HHHHhcCHHHHHHH
Confidence 88889888888776555444443332233322223322222 222222223 24455667777766
Q ss_pred HHHHHHH
Q 038516 341 HALVIKT 347 (708)
Q Consensus 341 ~~~~~~~ 347 (708)
+....+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 420
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.30 E-value=2.2e+02 Score=27.20 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=22.4
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHH
Q 038516 288 MIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTF 321 (708)
Q Consensus 288 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~ 321 (708)
+.+-..+.+++++|+..+.++... |+..|..+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~ 41 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTL 41 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhh
Confidence 334456677888888888888877 666665443
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=51.94 E-value=1.1e+02 Score=25.02 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516 503 EAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV 562 (708)
Q Consensus 503 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 562 (708)
+..+-+..+..-.+-|+......-+++|.+.+|+..|.++|+-++.+ ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 34555666666778888888888899999999999999999888764 223333454444
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=51.92 E-value=96 Score=25.58 Aligned_cols=43 Identities=9% Similarity=0.187 Sum_probs=30.1
Q ss_pred HHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516 538 RGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAE 580 (708)
Q Consensus 538 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (708)
.+.++|+.|...|+--. +..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777655444 55677777777888888888877754
No 423
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=51.82 E-value=2.8e+02 Score=28.37 Aligned_cols=342 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCcchhchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHH
Q 038516 4 THENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYN 83 (708)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 83 (708)
|.+-...-+.-++..|...|+...|-+....+...-++ +..+-.+|+.+....-.-...+.++.+-..-+..+-+
T Consensus 209 t~EEvK~kIn~~l~eyv~~getrea~rciR~L~vsffh-----he~vkralv~ame~~~ae~l~l~llke~~e~glissS 283 (645)
T KOG0403|consen 209 TVEEVKNKINGNLIEYVEIGETREACRCIRELGVSFFH-----HEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSS 283 (645)
T ss_pred cHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhCCCchh-----hHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhh
Q ss_pred HHHHHHHhCCC-------ChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHH
Q 038516 84 ALIAAYSRDHD-------HAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSL 156 (708)
Q Consensus 84 ~ll~~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 156 (708)
.+.+++.+.+. ....|...|+....+.+.-+-..=+++-..-...|+.+....+-+.+ ..+
T Consensus 284 q~~kGfsr~~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~------------~~I 351 (645)
T KOG0403|consen 284 QMGKGFSRKGGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDL------------TPI 351 (645)
T ss_pred ccccCchhhccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhh------------HHH
Q ss_pred HHHhHhCCChhHHHHHhccCCCC---CcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccC---
Q 038516 157 LGMYSNCGDFESAKRIFGLIGDK---DAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMG--- 230 (708)
Q Consensus 157 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--- 230 (708)
|+-|...|+..+..+.++.+..| ..+.--.+--++-+...-.+.-.+|-.-+...+-++...-+.....+-...
T Consensus 352 IqEYFlsgDt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtA 431 (645)
T KOG0403|consen 352 IQEYFLSGDTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTA 431 (645)
T ss_pred HHHHHhcCChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhh
Q ss_pred -ChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC-------------------------CChhH
Q 038516 231 -NFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN-------------------------PDLVS 284 (708)
Q Consensus 231 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------~~~~~ 284 (708)
+.-.|-+.+...+.+.+..++-.-..+=....+..-...+.+.++.... .-..-
T Consensus 432 LD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdk 511 (645)
T KOG0403|consen 432 LDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDK 511 (645)
T ss_pred ccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHH
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHH
Q 038516 285 WNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYF 364 (708)
Q Consensus 285 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 364 (708)
...|+.-|...|+..+|...++++.-- +-....++.+++.+.-
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-------------------------------------fFhHEvVkkAlVm~mE 554 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-------------------------------------FFHHEVVKKALVMVME 554 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-------------------------------------cchHHHHHHHHHHHHH
Q ss_pred hcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCC
Q 038516 365 KNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGD 399 (708)
Q Consensus 365 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 399 (708)
+.|+-...+.+++..-.....+-+.|-.+|-+..+
T Consensus 555 kk~d~t~~ldLLk~cf~sglIT~nQMtkGf~RV~d 589 (645)
T KOG0403|consen 555 KKGDSTMILDLLKECFKSGLITTNQMTKGFERVYD 589 (645)
T ss_pred hcCcHHHHHHHHHHHHhcCceeHHHhhhhhhhhhc
No 424
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=50.48 E-value=1.1e+02 Score=25.23 Aligned_cols=42 Identities=2% Similarity=-0.052 Sum_probs=30.4
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 606 MVIQAAEQVLR--LDPEDGTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 606 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
.+..+++.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666654 4566677788888888888888888888864
No 425
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.33 E-value=2.2e+02 Score=30.08 Aligned_cols=127 Identities=12% Similarity=0.102 Sum_probs=65.6
Q ss_pred HHHHhhHhcCCHHHHHHHHhhCCC--CChHHHHH---HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 038516 459 SLVDMYAKNGDLRAAESIFSQVLH--PDLKCWNA---LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS 533 (708)
Q Consensus 459 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 533 (708)
.++.-|.+.+++++|..++..|-- -....|.. +.+.+.+..--++....++.+...=..|....-.....-|..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d- 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD- 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-
Confidence 566778899999999999988852 12223333 333334433334444444544443222322111111111110
Q ss_pred CcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038516 534 GLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQ 609 (708)
Q Consensus 534 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 609 (708)
-=.+-|.+ +..-+.|.+++++|.-+--++. +.+.+..+-......|+.+.|..
T Consensus 492 ~V~~~aRR-------------------fFhhLLR~~rfekAFlLAvdi~----~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 492 PVSDLARR-------------------FFHHLLRYQRFEKAFLLAVDIG----DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHHH-------------------HHHHHHHhhHHHHHHHHHHhcc----chHHHHHHHHHHHhccchhhhhc
Confidence 00011111 2344567888888888876653 45566666666666777776653
No 426
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.29 E-value=1.1e+02 Score=23.27 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHH
Q 038516 235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKA 301 (708)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 301 (708)
+.++++.+.+.|+- +......+-.+--..|+.+.|+++++.++ .....|...+.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34555555555522 22223333322235577888888888888 7777788888887777765544
No 427
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.11 E-value=82 Score=33.58 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
.+.+.-+|....++|.|.++++++-+.+|.++-.-.....+....|+-++|..........-
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 44444455566677777777777777777766655556666666677777776666655443
No 428
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=48.90 E-value=1.1e+02 Score=31.44 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
-.++..+..+.+++|+..|-.+.++++++.|.... -++|++++....+
T Consensus 301 LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~--------------a~qArKil~~~e~ 348 (422)
T PF06957_consen 301 LALRSAMSQAFKLKNFITAASFARRLLELNPSPEV--------------AEQARKILQACER 348 (422)
T ss_dssp HHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH--------------HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH--------------HHHHHHHHHHHhc
Confidence 34666677788899999999999999999987532 3456777765543
No 429
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.11 E-value=69 Score=24.66 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516 592 RTLLSTCVAKRNSRMVIQAAEQVLRLD 618 (708)
Q Consensus 592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~ 618 (708)
..+.......|+.++|...+++++++-
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 334445667788888888888887653
No 430
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=47.96 E-value=26 Score=33.42 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCchHHHHHHHHHh
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL-LSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
.|+.+|...+....+.|-+.+-..++.+++.++|.|...|.. -.--|...++.+.++.+|.+..
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 578889988888788888999999999999999999998876 3445677889999888887443
No 431
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=47.54 E-value=38 Score=20.86 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=23.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+|..||.+-...++|++|.+-+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4688899999999999999888877643
No 432
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=47.39 E-value=4.1e+02 Score=28.99 Aligned_cols=59 Identities=5% Similarity=0.034 Sum_probs=31.7
Q ss_pred CcchhhHHHHHHhccCChHHHHHHhhcCCCCC-cccHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 038516 47 SPYMYNNVLSMYGRCGSIRDARQVFDEIPKRS-LVSYNALIAAYSRDHDHAHLTFRLIDQMEF 108 (708)
Q Consensus 47 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~ 108 (708)
.+..+..|+..+... +.++-.++++++.. . ...|..++.++...|. .....-+.+.+..
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT-~~a~~~i~~~i~~ 368 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGT-PPALKFIKQWIKN 368 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHc
Confidence 445566666665433 44555555555543 2 4566666777777666 4444344443333
No 433
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.25 E-value=5.3e+02 Score=30.16 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=41.6
Q ss_pred CChhhHHHHHHhcccCCChHHHH-HHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 038516 249 VDLPLENALLDMYSKCSDTQTAF-SVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISA 327 (708)
Q Consensus 249 ~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 327 (708)
++..+....+.++.+.|....+. .+...+..++...-...+.++...+. +++...+..+.+. |+...=...+.+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D----~~~~VR~~A~~a 861 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALTD----PHLDVRKAAVLA 861 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhcC----CCHHHHHHHHHH
Confidence 44555555555555555544332 23333334454444455555555543 2344444444432 344444444444
Q ss_pred HcCCCCccchHHHHHHHH
Q 038516 328 TSALPASAYGKPLHALVI 345 (708)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~ 345 (708)
+.+......+...+..+.
T Consensus 862 L~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 862 LTRWPGDPAARDALTTAL 879 (897)
T ss_pred HhccCCCHHHHHHHHHHH
Confidence 444322333444444433
No 434
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=47.02 E-value=74 Score=27.04 Aligned_cols=63 Identities=13% Similarity=0.148 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCC
Q 038516 101 RLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCG 164 (708)
Q Consensus 101 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 164 (708)
++.+.+++.|++++..-. .+++.+...++.-.|.++++++.+.+...+..|--.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 455666778887776644 466777777777888999999988887666555444555665555
No 435
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.55 E-value=2.7e+02 Score=26.31 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=114.1
Q ss_pred cCCChHHHHHHHHHHhHCCCccCHH---HHHHHHHHHhCcccHHHHHHHHHHHHH---hCC--CCchhHHHHHHHhhHhc
Q 038516 396 RMGDGECAIKLFCKMCREGLKCDNF---ALSGALSACADLAILKQGEMIHSQAEK---TGH--GVEMSVCGSLVDMYAKN 467 (708)
Q Consensus 396 ~~~~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 467 (708)
+..++++|+.-|++..+..-.-... ....++....+.+++++....+.++.. +.+ ..+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999999887743233333 444566677788888888877766542 222 23556778888877777
Q ss_pred CCHHHHHHHHhhCC-----CCChH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----CCh-------HHHHHHH
Q 038516 468 GDLRAAESIFSQVL-----HPDLK----CWNALLGGYSHYGMAEEAFMVFEVILEHGLR----PDE-------ITFLSLL 527 (708)
Q Consensus 468 g~~~~A~~~~~~~~-----~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~-------~~~~~ll 527 (708)
.+.+--.++|+..+ ..|.. |-+-|...|...|.+.+..++++++...--. .|. ..|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 77666666665432 12222 3345777888888888888888888764211 121 2455566
Q ss_pred HHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHH----HHHHHhcCCHHHHHHH
Q 038516 528 SACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCM----VSLLSRAGLLDEAENL 577 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l----~~~~~~~g~~~~A~~~ 577 (708)
..|....+-.....+|++...- .-.|.+.....+ +....+.|++++|-.-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH
Confidence 6777777777777778776654 444555544432 2344577888877643
No 436
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.49 E-value=2.1e+02 Score=27.29 Aligned_cols=83 Identities=8% Similarity=-0.077 Sum_probs=51.8
Q ss_pred HHHHhccCcHHHHHHHHHHhhHC--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHh--
Q 038516 527 LSACSHSGLVERGKILWNQMKEH--SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSE--IRIELWRTLLSTCVA-- 600 (708)
Q Consensus 527 l~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~-- 600 (708)
|.+++..+++.++..+.-+-.+. .++|. ....-|-.|.+.|....+.++-..-...+ -+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 55888888888887766555544 34443 34445566888888888777766552221 223336666555443
Q ss_pred ---cCCHHHHHHHH
Q 038516 601 ---KRNSRMVIQAA 611 (708)
Q Consensus 601 ---~~~~~~a~~~~ 611 (708)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 78888887776
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.73 E-value=1.7e+02 Score=28.27 Aligned_cols=44 Identities=7% Similarity=0.058 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 038516 201 LSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVII 244 (708)
Q Consensus 201 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 244 (708)
.++++.|...++.|.-..|..+.-.+.+.=.+.....+|+.+.+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 35666666667777777776666666666666777777766654
No 438
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=43.81 E-value=92 Score=25.57 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
+-..+...-+.+.|+++|+++++..|++-.++..+...+-.
T Consensus 82 fq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 82 FQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 33334445678999999999999999999988887765544
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.09 E-value=48 Score=31.84 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS 525 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 525 (708)
-|+..|....+.||+++|+.+++++.+.|+.--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 466788888888888888888888888887655555543
No 440
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.58 E-value=3.8e+02 Score=27.20 Aligned_cols=53 Identities=17% Similarity=-0.082 Sum_probs=31.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCChHH----HHHHHHHHh--ccCcHHHHHHHHHH
Q 038516 493 GGYSHYGMAEEAFMVFEVILEHGLRPDEIT----FLSLLSACS--HSGLVERGKILWNQ 545 (708)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~--~~~~~~~a~~~~~~ 545 (708)
..+.+.+++..|.++|+++.+..+.|+... +..+..+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345566777788888888877655554433 222333332 34466777777764
No 441
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=41.98 E-value=3.1e+02 Score=26.07 Aligned_cols=86 Identities=10% Similarity=0.099 Sum_probs=45.5
Q ss_pred HHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC-----CHhHHHHHHHHHcCC
Q 038516 257 LLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKP-----DEYTFAAIISATSAL 331 (708)
Q Consensus 257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~t~~~ll~~~~~~ 331 (708)
++-.|.|.-+...-..+|+.+..| ..|..-|.+.|+.+.|-.++--+...++... +...-..++......
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 333344444444444555555322 2456666677777777766666654422222 233334455555666
Q ss_pred CCccchHHHHHHHHHH
Q 038516 332 PASAYGKPLHALVIKT 347 (708)
Q Consensus 332 ~~~~~a~~~~~~~~~~ 347 (708)
++++.+.++.+.+...
T Consensus 234 ~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 234 GDWDLCFELVRFLKAL 249 (258)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 6666666666655544
No 442
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.61 E-value=3.4e+02 Score=26.36 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH----------hcCCHHHH
Q 038516 505 FMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS----------RAGLLDEA 574 (708)
Q Consensus 505 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----------~~g~~~~A 574 (708)
.++|+.+...++.|....|..+.-.+++.=...+.+.+|+.+....-. |..|+..++ -.|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 468888888899999999888888888888899999999998864222 444444433 35788888
Q ss_pred HHHHHhCCCC
Q 038516 575 ENLIAESPYS 584 (708)
Q Consensus 575 ~~~~~~~~~~ 584 (708)
.++++.-|..
T Consensus 338 mkLLQ~yp~t 347 (370)
T KOG4567|consen 338 MKLLQNYPTT 347 (370)
T ss_pred HHHHhcCCCC
Confidence 8888776543
No 443
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.53 E-value=51 Score=33.77 Aligned_cols=103 Identities=12% Similarity=-0.033 Sum_probs=62.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcC
Q 038516 492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL-SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAG 569 (708)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 569 (708)
+..+...+.++.|+.++.++++ +.||...|-..= .++.+.+++..|+.=+..+++. .|+ ...|..=+.++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL--DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc--CchhhheeeeccHHHHhHH
Confidence 3455666788888888888888 577766554433 5778888888887777777663 344 222333334455556
Q ss_pred CHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 038516 570 LLDEAENLIAESPYSEIRIELWRTLLSTC 598 (708)
Q Consensus 570 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 598 (708)
++.+|...++......|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 66777777766633324444444444333
No 444
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.41 E-value=1.8e+02 Score=23.22 Aligned_cols=28 Identities=7% Similarity=0.089 Sum_probs=21.8
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHh
Q 038516 182 VAWNSIILGNFKNDKMKEGLSLFGAMVG 209 (708)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 209 (708)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3577788888888888888888887766
No 445
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.01 E-value=1.2e+02 Score=28.69 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 560 CMVSLLSRAGLLDEAENLIAESPY-------SEIRIELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
.|+..|.+.|++++|.++++.+.. ..+...+...+..++...|+.+....+.=
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 466777778888888887777611 01123334444445555666666555443
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.90 E-value=3.1e+02 Score=25.45 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 038516 482 HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE 520 (708)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 520 (708)
.|.+.....++..|.. +++++|.+.+.++-+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH
Confidence 4666666666655543 6777777777777777777643
No 447
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.70 E-value=4.4e+02 Score=27.14 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=11.1
Q ss_pred HHHhHhCCChhHHHHHhcc
Q 038516 157 LGMYSNCGDFESAKRIFGL 175 (708)
Q Consensus 157 i~~~~~~g~~~~A~~~~~~ 175 (708)
+...+..|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 4445566666666666654
No 448
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.45 E-value=28 Score=33.79 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 467 NGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
.|.++.|++.|...++ +....|.--..++.+.+++..|++=+...++
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e 176 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE 176 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc
Confidence 4445555555544432 2222333333444444445555444444444
No 449
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.63 E-value=4.6e+02 Score=27.02 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=67.2
Q ss_pred HHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcc--cHHHHHHHHHhCCC
Q 038516 17 QICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLV--SYNALIAAYSRDHD 94 (708)
Q Consensus 17 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~ 94 (708)
......|+.+.+ ..+.+.|..|... .....+.+...++.|+.+-+.-+++.=..++.. .....+...++.|+
T Consensus 7 ~~A~~~g~~~iv----~~Ll~~g~~~n~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 7 CDAILFGELDIA----RRLLDIGINPNFE--IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHhCCHHHH----HHHHHCCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 334445665444 4444567652110 112334556666778877666666543322221 11233445556677
Q ss_pred ChHHHHHHHHHHHHcCCCCCcc---hHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhH--HhHHHHHhHhCCChhHH
Q 038516 95 HAHLTFRLIDQMEFECLRPNGL---TFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV--QTSLLGMYSNCGDFESA 169 (708)
Q Consensus 95 ~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A 169 (708)
.+.+..++ +.|...+.. .-.+.+...+..|+. ++.+.+.+.|..|+... -.+.+...+..|+.+-+
T Consensus 81 -~~~v~~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v 151 (413)
T PHA02875 81 -VKAVEELL----DLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI 151 (413)
T ss_pred -HHHHHHHH----HcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 55544433 333221111 011233334445554 34455556676554321 12344455566776666
Q ss_pred HHHhcc
Q 038516 170 KRIFGL 175 (708)
Q Consensus 170 ~~~~~~ 175 (708)
.-+++.
T Consensus 152 ~~Ll~~ 157 (413)
T PHA02875 152 ELLIDH 157 (413)
T ss_pred HHHHhc
Confidence 666554
No 450
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.46 E-value=2.9e+02 Score=25.52 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHh
Q 038516 565 LSRAGLLDEAENLIAE 580 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~ 580 (708)
+.|.|..++|+++.+.
T Consensus 113 liR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 113 LIREGKTEEALEFAQT 128 (228)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 3456666666666654
No 451
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.01 E-value=2.1e+02 Score=22.85 Aligned_cols=27 Identities=15% Similarity=0.349 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777777766
No 452
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.91 E-value=4.9e+02 Score=27.17 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
.+.-..+-.+...|+.-.|.+.+.+++..--.+|..|..|+.+|.-.
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444455567788888888888888888888888888888877653
No 453
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=37.66 E-value=1.4e+02 Score=26.80 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
|++..+..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888899999999999999999888888
No 454
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.08 E-value=4.7e+02 Score=26.63 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHH---------CCCCch
Q 038516 284 SWNSMIAGYMENGNGEKAVDMFVALRRM-SLLKPDEYTFAAIISATSALPASAYGKPLHALVIKT---------GYDSSV 353 (708)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 353 (708)
.+..+...|...|+++.|++.|.+.+.- ...+-....+..+|....-.|+|.....+..+.... .+++-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Q ss_pred hHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcc
Q 038516 354 FVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLA 433 (708)
Q Consensus 354 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 433 (708)
..+..|.....+ .+..|.+.|-........ |..++ .|..++....+.+.+--+
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d-~~~iv------------------------tpsdv~iYggLcALAtfd 284 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCD-YPEIV------------------------TPSDVAIYGGLCALATFD 284 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccC-cccee------------------------cchhhHHHHhhHhhccCC
Q ss_pred cHHHHHHHHHHHHHhCC-CCchhHHHHHHHhhHhcCCHHHHHHHHhhC---------CCCChHHHHHHHH
Q 038516 434 ILKQGEMIHSQAEKTGH-GVEMSVCGSLVDMYAKNGDLRAAESIFSQV---------LHPDLKCWNALLG 493 (708)
Q Consensus 434 ~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~~li~ 493 (708)
+-+--..+.....-..+ ...+.....+...|. +++....++++++ +.|.+.+.-.+|+
T Consensus 285 r~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR 352 (466)
T KOG0686|consen 285 RQDLKLNVIKNESFKLFLELEPQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIR 352 (466)
T ss_pred HHHHHHHHHcchhhhhHHhcChHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHHH
No 455
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=37.03 E-value=2.4e+02 Score=23.26 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.0
Q ss_pred HHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516 538 RGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAE 580 (708)
Q Consensus 538 ~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (708)
+..++|..|...|+--. +..|...+..+...|++.+|.++++.
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 35667888877765544 45677777888888888888888763
No 456
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=36.83 E-value=4e+02 Score=25.77 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=59.6
Q ss_pred CHHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-------CcH
Q 038516 469 DLRAAESIFSQVLH-PDLKCWNALLGGYSH----YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS-------GLV 536 (708)
Q Consensus 469 ~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------~~~ 536 (708)
+...|..+|..... ........|...|.. ..|..+|..+|+++.+.|..+...+...+...+... -+.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 35555555554432 223333334444443 236778888888888877444311222222222221 133
Q ss_pred HHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCC
Q 038516 537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYS 584 (708)
Q Consensus 537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 584 (708)
..|...|.++...+ +......+...|.. ..++++|...|+++...
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 46777777777655 23333344444432 34778888888887554
No 457
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.57 E-value=46 Score=31.97 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchH
Q 038516 184 WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSY 219 (708)
Q Consensus 184 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 219 (708)
||..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 556666677777777777777777666654333333
No 458
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.04 E-value=52 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=24.9
Q ss_pred hcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 038516 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNAC 226 (708)
Q Consensus 192 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 226 (708)
-..|.-..|-.+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3457778899999999999988875 56666543
No 459
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.96 E-value=8e+02 Score=29.00 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=78.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHH
Q 038516 488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE----ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVS 563 (708)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 563 (708)
|.-.++.+-+.+-.+.+.++-..+++. +.|+. .+++.+..-....|.+.+|.+.+-.-- ...-.......|+-
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np--dserrrdcLRqlvi 1062 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP--DSERRRDCLRQLVI 1062 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC--cHHHHHHHHHHHHH
Confidence 566778888888888888888888875 44443 336667777777777777754432211 11122345666777
Q ss_pred HHHhcCCHHH------------HHH-HHHhC-CCCC-CCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCCCcc
Q 038516 564 LLSRAGLLDE------------AEN-LIAES-PYSE-IRIELWRTLLSTCVAKRNSRMV-IQAAEQVLRLDPEDGT 623 (708)
Q Consensus 564 ~~~~~g~~~~------------A~~-~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~p~~~~ 623 (708)
.+..+|.++. ... +++.. ...+ .....|..|...+...+|+.+| -.+|+.+..+..+...
T Consensus 1063 vLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~ 1138 (1480)
T KOG4521|consen 1063 VLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCM 1138 (1480)
T ss_pred HHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccC
Confidence 7778877653 333 22222 1110 1233455555555566677665 4457777777766544
No 460
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.50 E-value=2.1e+02 Score=23.48 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 582 PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 582 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
... |++.+....+.+|++-+|+..|++.++-+...-+.....|-.+
T Consensus 79 DlV-P~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 79 DLV-PSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred ccC-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344 7888888888889888899989888887776665544444444
No 461
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.03 E-value=5.3e+02 Score=26.69 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=28.4
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 038516 489 NALLGGYSH---YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS 533 (708)
Q Consensus 489 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 533 (708)
..++.++.+ .++++.|+.++.+|.+.|..|....-..+..++...
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 334444443 478888888889988888777655544444444333
No 462
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.99 E-value=1.3e+02 Score=19.65 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=19.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 528 (708)
.+.|-.+++...+++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344556666666666666666666655555443
No 463
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=34.46 E-value=4.8e+02 Score=25.96 Aligned_cols=31 Identities=26% Similarity=0.237 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516 518 PDEITFLSLLSACSHSGLVERGKILWNQMKE 548 (708)
Q Consensus 518 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 548 (708)
||......++++.+...........++.+.+
T Consensus 228 ~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~ 258 (340)
T PF12069_consen 228 PDLELLSALLRALSSAPASDLVAILIDALLQ 258 (340)
T ss_pred CCHHHHHHHHHHHcCCCchhHHHHHHHHHhc
Confidence 5666666666665555444444443444443
No 464
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.27 E-value=3.5e+02 Score=27.45 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=82.9
Q ss_pred HHHHHHHH--HHhccCcHHHHHHHHHHhhHCCCCcC--------hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCC--
Q 038516 521 ITFLSLLS--ACSHSGLVERGKILWNQMKEHSLIPG--------HKHYSCMVSLLSRAGLLDEAENLIAES----PYS-- 584 (708)
Q Consensus 521 ~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-- 584 (708)
..|..++- -+..++++.+|.++-+.....-..-+ ...|..+...|...|+..+-..++... ...
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 34444444 33455777777776666544311112 223444556677888877777665443 222
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC--cchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 585 -EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD--PED--GTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 585 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
.....+.+.|+..|...+-++.|.....+..--+ .++ +.....+|.+-.-+++|..|.+.|-.+..+.
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 1235567888888888999999988877654211 111 2345688999999999999999998776543
No 465
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.91 E-value=24 Score=26.15 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=25.6
Q ss_pred cCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 601 KRNSRMVIQAAEQVLRLD------PEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.|+.+.|...|++.++.- |.. .....-.|+.|.++.++|..
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~---------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP---------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC---------cccccHHHHHHHHHHHHHHH
Confidence 467777777777766421 111 12344568889888888864
No 466
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.67 E-value=4.3e+02 Score=26.10 Aligned_cols=87 Identities=15% Similarity=0.092 Sum_probs=0.0
Q ss_pred hHHHHHHHhhHhcCCHHHHHHHHhhC-------CCCChHHHHH--HHHHHHhcCChHHHHHHHHHHHH-----CCCCCCh
Q 038516 455 SVCGSLVDMYAKNGDLRAAESIFSQV-------LHPDLKCWNA--LLGGYSHYGMAEEAFMVFEVILE-----HGLRPDE 520 (708)
Q Consensus 455 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~ 520 (708)
.....++...-+.++.++|.++++++ ..|+...|.. +...+...||..++.+++.+... .|++|+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Q ss_pred HH-HHHHHH-HHhccCcHHHHHH
Q 038516 521 IT-FLSLLS-ACSHSGLVERGKI 541 (708)
Q Consensus 521 ~~-~~~ll~-~~~~~~~~~~a~~ 541 (708)
.+ |..+-. -|-..|++...-+
T Consensus 156 h~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 156 HSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHH
No 467
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=33.66 E-value=5.9e+02 Score=26.78 Aligned_cols=421 Identities=10% Similarity=-0.034 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCC-hhHHHHHhc
Q 038516 96 AHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD-FESAKRIFG 174 (708)
Q Consensus 96 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~ 174 (708)
+.....+|+....+ ...|...|..-+.-|.+.+.......++.+|+... +.++..|-.-..-....+. ++.|..+
T Consensus 87 ~~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRal-- 162 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARAL-- 162 (568)
T ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHH--
Q ss_pred cCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHh-----------------------------------------CCCC
Q 038516 175 LIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVG-----------------------------------------SGVN 213 (708)
Q Consensus 175 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------------------------------------~g~~ 213 (708)
+++++-.+.+.+.-..-|-+|.- .|..
T Consensus 163 ------------flrgLR~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~ 230 (568)
T KOG2396|consen 163 ------------FLRGLRFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAV 230 (568)
T ss_pred ------------HHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcch
Q ss_pred CCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHH
Q 038516 214 PTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYM 293 (708)
Q Consensus 214 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 293 (708)
+... ....-......+..+-.-.....+.+.++.++. +.|.+.++-..+.+...+...-.++.
T Consensus 231 k~~e-----~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~------------~laqr~l~i~~~tdl~~~~~~~~~~~ 293 (568)
T KOG2396|consen 231 KSVE-----LSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWD------------DLAQRELEILSQTDLQHTDNQAKAVE 293 (568)
T ss_pred hhcc-----hHHHHHHHHHHHHHHHHHHHHhccCCCCCccHH------------HHHHHHHHHHHHhhccchhhhhhchh
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHH
Q 038516 294 ENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQ 373 (708)
Q Consensus 294 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 373 (708)
-....+....+|++.... .|+...+...|..|...-.......+...+. ..
T Consensus 294 ~~~k~s~~~~v~ee~v~~---l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~--------------------------~~ 344 (568)
T KOG2396|consen 294 VGSKESRCCAVYEEAVKT---LPTESMWECYITFCLERFTFLRGKRILHTMC--------------------------VF 344 (568)
T ss_pred cchhHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--------------------------HH
Q ss_pred HHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhCCC
Q 038516 374 KVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL--AILKQGEMIHSQAEKTGHG 451 (708)
Q Consensus 374 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~ 451 (708)
+.+..........+......+.......++...-..+...++.-+...+..-+...... .---.-...+......-..
T Consensus 345 ~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s 424 (568)
T KOG2396|consen 345 RKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCS 424 (568)
T ss_pred HHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcc
Q ss_pred CchhHHHHHH-HhhHhcCCHHHHHHHHhhCCCCChHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH-
Q 038516 452 VEMSVCGSLV-DMYAKNGDLRAAESIFSQVLHPDLKCWNA-LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS- 528 (708)
Q Consensus 452 ~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~- 528 (708)
+....+++.. ..+......+.....+..+..++..++.. ++.-+.+.|-+.+|...+..+... .+|+...|..++.
T Consensus 425 ~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~ 503 (568)
T KOG2396|consen 425 ELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQF 503 (568)
T ss_pred hhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHH
Q ss_pred -HHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 529 -ACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 529 -~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
.-..+-+..-+.++|+.|... | .++..|-.....=...|..+-+-.++.++
T Consensus 504 e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 504 EKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
No 468
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.56 E-value=5.2e+02 Score=26.15 Aligned_cols=166 Identities=14% Similarity=0.030 Sum_probs=92.8
Q ss_pred CHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH---HhccCcHHHHHHHHHH
Q 038516 469 DLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA---CSHSGLVERGKILWNQ 545 (708)
Q Consensus 469 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~ 545 (708)
+.+.-..++.. -+-.+.++-.+...+.+.|+.+.|.+++++++-.- ...+...... -...|...
T Consensus 25 Dp~~l~~ll~~-~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~r-------- 91 (360)
T PF04910_consen 25 DPNALINLLQK-NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCR-------- 91 (360)
T ss_pred CHHHHHHHHHH-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccc--------
Confidence 44444444422 23456777778888889999999988888876420 0011111100 00111100
Q ss_pred hhHCCCCcChHHHHH---HHHHHHhcCCHHHHHHHHHhC-CCCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCC
Q 038516 546 MKEHSLIPGHKHYSC---MVSLLSRAGLLDEAENLIAES-PYSEI-RIELWRTLLSTCV-AKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 546 ~~~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p 619 (708)
+ .-...-+...|-+ .+..+.+.|-+..|.++.+-+ ...+. |+......+..|+ +.++++--+.+++.......
T Consensus 92 L-~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 92 L-DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred c-CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 0 0011113333433 357788999999999998877 33322 5555566666654 46777777777776554211
Q ss_pred C-----CcchHHHHHHHHHhcCCc---------------hHHHHHHHHH
Q 038516 620 E-----DGTTHILLSNLYAATGRW---------------DCVAKMRRKM 648 (708)
Q Consensus 620 ~-----~~~~~~~l~~~~~~~g~~---------------~eA~~~~~~~ 648 (708)
. -|..-..++-++...++- ++|.+.+.++
T Consensus 171 ~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 171 RNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred hhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHH
Confidence 1 234455666677777777 7777666554
No 469
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.51 E-value=70 Score=22.35 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=17.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 489 NALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
-.+|.+|.+.|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3466777777888888777777665
No 470
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.46 E-value=2.5e+02 Score=28.79 Aligned_cols=106 Identities=10% Similarity=0.008 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh----------------HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 518 PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH----------------KHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 518 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
|+......+++.+-..-+-.+..+.++.... |..|+. .+.-.|++..+-.|++..|++.++.+
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~-~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKR-GEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhc-cCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 582 PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 582 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
......... ...+-..+++.++|-+|.-.++|.+|.+.|....
T Consensus 149 dl~~~~l~~-------------------------~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 149 DLNKKGLYT-------------------------KVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred Ccccchhhc-------------------------cCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.28 E-value=5.3e+02 Score=26.19 Aligned_cols=54 Identities=6% Similarity=-0.124 Sum_probs=39.3
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcChH----HHHHHHHHHH--hcCCHHHHHHHHHhC
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPGHK----HYSCMVSLLS--RAGLLDEAENLIAES 581 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~--~~g~~~~A~~~~~~~ 581 (708)
..+...+++..|.++|+.+......|+.. .|..+..+|. ..-++++|.+.++++
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 35667899999999999999876555433 3444445544 566889999999874
No 472
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=33.18 E-value=4.7e+02 Score=25.56 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=84.3
Q ss_pred HHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 038516 442 HSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE 520 (708)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 520 (708)
++.+...++-+.......-++.+.+....|-+..+++.+- ..|.. +++ .. +-.+.+.-++++.+. +.|=.
T Consensus 23 lEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~----~e--kr~~Vla~lkeLe~e-v~piv 93 (432)
T KOG2758|consen 23 LEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NAL----VE--KRTEVLAELKELEEE-VAPIV 93 (432)
T ss_pred HHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHH----HH--HHHHHHHHHHHHHHH-HHHHH
Confidence 4444455666666666677777777888888888887662 11111 111 10 111222223333221 11100
Q ss_pred HHH--HHHHHHHhccCcHHHHHHHHHHhhHC-CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCCHHHHHHH
Q 038516 521 ITF--LSLLSACSHSGLVERGKILWNQMKEH-SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES--PYSEIRIELWRTL 594 (708)
Q Consensus 521 ~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~l 594 (708)
..+ --++..... -.+....++.+.+. ++.|+ ..+...+......+|++..|-.++--. ...+|+...++.+
T Consensus 94 ~~le~Pd~~~~~~~---~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsal 170 (432)
T KOG2758|consen 94 KVLENPDLIAALRS---DKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSAL 170 (432)
T ss_pred HHHcCHHHHHHHHh---hhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHH
Confidence 000 001111111 12225566666666 88887 556666778888999999998875332 2222454333333
Q ss_pred HHHHH---hcCCHHHHHHHHHHHHh
Q 038516 595 LSTCV---AKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 595 ~~~~~---~~~~~~~a~~~~~~~~~ 616 (708)
.+-++ -.-+++.|.+-+.++.+
T Consensus 171 wGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 171 WGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33222 24578888877777665
No 473
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=32.73 E-value=44 Score=27.62 Aligned_cols=33 Identities=36% Similarity=0.685 Sum_probs=23.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC 530 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 530 (708)
...|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667789999999999988875 55555543
No 474
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=32.64 E-value=5e+02 Score=25.66 Aligned_cols=121 Identities=8% Similarity=0.034 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh------ccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHH
Q 038516 500 MAEEAFMVFEVILEHGLRPDEITFLSLLSACS------HSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDE 573 (708)
Q Consensus 500 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 573 (708)
-.+++..++++....+ .|........|.+|- ..-+|.....+|+.+....-.|- .+.|-- -++...--.+.
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LNRA-VAla~~~Gp~a 347 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLNRA-VALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-EeehHH-HHHHHhhhHHh
Confidence 3577888888888886 478777777776552 23467888888888877433332 223322 22333334566
Q ss_pred HHHHHHhCCCCC--CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 574 AENLIAESPYSE--IRIE-LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 574 A~~~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
++..++.+...+ .... .+..-...+.+.|..++|...|++++.+.++...
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 677776664331 1222 2344455678899999999999999999887654
No 475
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.62 E-value=1.4e+02 Score=24.35 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+.++.++|..|..-..-+.+|.+..+.+-|.-..+-.++
T Consensus 57 vrslL~i~pPEPd~~~~~aKaY~EE~D~~VA~mMAr~vre 96 (165)
T COG4016 57 VRSLLDIKPPEPDFNYKYAKAYSEEKDLEVAKMMARGVRE 96 (165)
T ss_pred HHHHhCCCCCCCCcchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 4567788888888878888999998888887766555543
No 476
>PRK14015 pepN aminopeptidase N; Provisional
Probab=31.96 E-value=8.7e+02 Score=28.24 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516 571 LDEAENLIAESPYSEIRIELWRTLLSTCVAKR-------NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK 643 (708)
Q Consensus 571 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 643 (708)
++...++.+.-.+...++.-.++|+.++...+ +-..=.-+.+.++++++-|+.+-..|+..+..-.++++.++
T Consensus 766 ~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~ 845 (875)
T PRK14015 766 LERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQ 845 (875)
T ss_pred HHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHH
Confidence 34444444443444346667888888875432 23334455678889999999999999999999888888776
Q ss_pred H
Q 038516 644 M 644 (708)
Q Consensus 644 ~ 644 (708)
.
T Consensus 846 ~ 846 (875)
T PRK14015 846 A 846 (875)
T ss_pred H
Confidence 4
No 477
>PF15469 Sec5: Exocyst complex component Sec5
Probab=31.80 E-value=3.7e+02 Score=23.86 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 602 RNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
...+....+...+++++|+...+|..|
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 456677777777778877665555543
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.61 E-value=3e+02 Score=22.73 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=29.5
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516 607 VIQAAEQVLR--LDPEDGTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 607 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
...+|+.+.. +.-..+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555543 445566778888999999999999998886
No 479
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=31.33 E-value=2.1e+02 Score=21.54 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCC
Q 038516 28 ARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHD 94 (708)
Q Consensus 28 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (708)
...++..+...|+- +....-..-+...+.+.|.++++.++.++..+|.....++-..|.
T Consensus 18 ~~~v~~~L~~~~Vl--------t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 18 PKYLWDHLLSRGVF--------TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHhcCCC--------CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 34566777766644 333334444555678888888888888888888888888877765
No 480
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.14 E-value=1.7e+02 Score=25.64 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=23.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccC
Q 038516 186 SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMG 230 (708)
Q Consensus 186 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 230 (708)
.++..+...++.-.|.++++.+.+.+..++..|....|..+...|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 344444444455556666666666555555555444455554444
No 481
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.03 E-value=1e+02 Score=21.54 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516 520 EITFLSLLSACSHSGLVERGKILWNQMKE 548 (708)
Q Consensus 520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 548 (708)
......++.++...|++++|.++++.+.+
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344556666666666666666666543
No 482
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.95 E-value=1.8e+02 Score=24.68 Aligned_cols=40 Identities=10% Similarity=0.029 Sum_probs=17.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 038516 187 IILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNAC 226 (708)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 226 (708)
++..+.+.++.-.|.++|+.+.+.+...+..|....++.+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 3344444444444445555544444333333333333333
No 483
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.89 E-value=2.3e+02 Score=30.02 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=43.0
Q ss_pred hhHHHHHHhccCChHHHHHHhhcCCC--CCcc---cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcc
Q 038516 51 YNNVLSMYGRCGSIRDARQVFDEIPK--RSLV---SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGL 116 (708)
Q Consensus 51 ~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 116 (708)
...|+.-|.+.+++++|..++..|.= -... +.+.+.+.+.+..- -.+....++.+...-..|...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl-~~ere~~le~algsF~ap~rp 480 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPL-TPEREAQLEAALGSFYAPTRP 480 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHhhccCCCcC
Confidence 45788999999999999999999971 1222 34455566666654 455556666666554444443
No 484
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.78 E-value=1.8e+02 Score=22.66 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=14.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHH
Q 038516 622 GTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
|..+.+|+-+|...|+-+.|.+-|+
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFe 96 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFE 96 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHH
Confidence 4445555556666666555555554
No 485
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.73 E-value=2e+02 Score=24.50 Aligned_cols=62 Identities=10% Similarity=0.133 Sum_probs=39.1
Q ss_pred HHHHHcCCCCCcchHHHHHHHhccc-cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516 104 DQMEFECLRPNGLTFTSLAQAVSLL-EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF 166 (708)
Q Consensus 104 ~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 166 (708)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566777665543 344555543 45667888888888888666666655556666666643
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.44 E-value=2.6e+02 Score=21.76 Aligned_cols=18 Identities=22% Similarity=0.167 Sum_probs=7.9
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 038516 561 MVSLLSRAGLLDEAENLI 578 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~ 578 (708)
|.-.|.+.|+-+.|.+-|
T Consensus 78 LGlLys~~G~~e~a~~eF 95 (121)
T COG4259 78 LGLLYSNSGKDEQAVREF 95 (121)
T ss_pred HHHHHhhcCChHHHHHHH
Confidence 333444444444444444
No 487
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.20 E-value=4.5e+02 Score=24.41 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=60.7
Q ss_pred HHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516 487 CWNALLGGYS--HYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL 564 (708)
Q Consensus 487 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (708)
.|...+.++. .++++++|.+.+-.- .+.|+.. ..++.++...|+.+.|+.+++...-.. .+......+...
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 3555666654 456666777666221 1222222 236666666788888888887654311 122223333333
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 038516 565 LSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR 602 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 602 (708)
...|...||..+.+..+.. .....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~-~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDE-LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchh-hhHHHHHHHHHHHHHHh
Confidence 5668888888888877553 33556666666665433
No 488
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=29.99 E-value=5e+02 Score=24.80 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=21.0
Q ss_pred CchhHHHHHHHhhHhcCCHHHHHHHHhhC
Q 038516 452 VEMSVCGSLVDMYAKNGDLRAAESIFSQV 480 (708)
Q Consensus 452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 480 (708)
-++.....+...|.+.|++.+|+..|-.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 36778888889999999998888777443
No 489
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=29.72 E-value=6e+02 Score=25.71 Aligned_cols=195 Identities=13% Similarity=0.100 Sum_probs=111.2
Q ss_pred CCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH-HHHHH-HCCCCCChHHHHHHH
Q 038516 450 HGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV-FEVIL-EHGLRPDEITFLSLL 527 (708)
Q Consensus 450 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~-~~g~~p~~~~~~~ll 527 (708)
...+..++..++..|...++|+.--+.. ....-++|+...|+.. .++.. -..-.||..|-..++
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li 113 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLI 113 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHH
Confidence 3445555666667777666665443322 1223455666666542 22222 222245666555555
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcC---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-------HHHHHHHHHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPG---HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-------IELWRTLLST 597 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~ 597 (708)
..+.. ..+-.+-.. ...-..|...+..+|+.++|..++.+.+..... ......-+..
T Consensus 114 ~tLr~-------------VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrK 180 (439)
T KOG1498|consen 114 ETLRT-------------VTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRL 180 (439)
T ss_pred HHHHH-------------hhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH
Confidence 43321 111111111 222334678888999999999999888544111 1122333566
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcc-------hHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEE
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDGT-------THILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHV 670 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (708)
|...+|+-.|.-+.+++....=+.+. .|..+..+....+.|=++-+.++..-.-|-.++...-|+++--.+..
T Consensus 181 OG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~ 260 (439)
T KOG1498|consen 181 CLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVS 260 (439)
T ss_pred HHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhee
Confidence 78889999998888877654322222 37777888888889999999988887766555533446665444433
Q ss_pred E
Q 038516 671 F 671 (708)
Q Consensus 671 ~ 671 (708)
|
T Consensus 261 f 261 (439)
T KOG1498|consen 261 F 261 (439)
T ss_pred E
Confidence 4
No 490
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=29.44 E-value=99 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
|+..|.++..+.|++..+|..||-++...|+.=+|.-.+-+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~R 41 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIR 41 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHH
Confidence 56778888888888888888888888888877777654443
No 491
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.26 E-value=1.9e+02 Score=21.52 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=5.3
Q ss_pred ccCChHHHHHHhh
Q 038516 60 RCGSIRDARQVFD 72 (708)
Q Consensus 60 ~~g~~~~A~~~~~ 72 (708)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444443
No 492
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=29.19 E-value=1.1e+02 Score=17.43 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=21.4
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 608 IQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
.....+++..+|++.++|...-+++..
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 456778889999999998888776654
No 493
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=28.96 E-value=5.5e+02 Score=27.45 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=36.4
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHH
Q 038516 619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRG 693 (708)
Q Consensus 619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 693 (708)
-.+.-.|..++.-|.+.+++.||...+.....- + .-+.-.-+.+|||+++-++-.
T Consensus 315 n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V-i-------------------~~YnY~reDeEiYKEfleIAn 369 (618)
T PF05053_consen 315 NHHVYPYTYLGGYYYRHKRYREALRSWAEAADV-I-------------------RKYNYSREDEEIYKEFLEIAN 369 (618)
T ss_dssp T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-H-------------------TTSB--GGGHHHHHHHHHHHH
T ss_pred CCccccceehhhHHHHHHHHHHHHHHHHHHHHH-H-------------------HHcccCccHHHHHHHHHHHHH
Confidence 345567899999999999999999998866321 0 001113578999998876553
No 494
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.64 E-value=4.8e+02 Score=24.23 Aligned_cols=118 Identities=11% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHhhH--hcCCHHHHHHHHhhCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 038516 459 SLVDMYA--KNGDLRAAESIFSQVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGL 535 (708)
Q Consensus 459 ~l~~~~~--~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 535 (708)
.+++++- -.+++++|.+.+..-. .|+-. .-++.++...|+...|+.+++...-.. .+......++.. ...+.
T Consensus 81 ~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~ 155 (226)
T PF13934_consen 81 KFIQGFWLLDHGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGL 155 (226)
T ss_pred HHHHHHHHhChHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCC
Confidence 3444443 3466777777664331 11111 236666666777777777777643211 112222223333 44577
Q ss_pred HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 038516 536 VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYS 584 (708)
Q Consensus 536 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 584 (708)
+.+|..+-+...+.. ....+..++..+..........+.+-.+|..
T Consensus 156 v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~ 201 (226)
T PF13934_consen 156 VTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECARSGRLDELLSLPLD 201 (226)
T ss_pred HHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhhhhHHHHHHhCCCC
Confidence 777777666554311 1334555555555433223333334444554
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=28.62 E-value=2.6e+02 Score=21.16 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccC
Q 038516 112 RPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLI 176 (708)
Q Consensus 112 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 176 (708)
.|+...|...++.......-+. ++++-....|+..|+.+|..++....-.=..+...++++.|
T Consensus 7 ~~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 7 SPTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred CChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 496
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.39 E-value=3.3e+02 Score=22.24 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHH-------HHhCC-CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHh
Q 038516 557 HYSCMVSLLSRAGLLDEAENL-------IAESP-YSEIRIELWRTLL----STCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~-------~~~~~-~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~ 616 (708)
.+..|..++...|++++++.- |++=. ........|...+ .++...|..++|...++.+-+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 344455666666666655433 33322 1213345555443 345568888998888887654
No 497
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=28.16 E-value=2.4e+02 Score=21.60 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCC
Q 038516 28 ARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHD 94 (708)
Q Consensus 28 a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 94 (708)
...++..+.+.|+- +. ...-...+...+.+.+.++++.+++++..+|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvl-----t~---~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDIL-----TD---SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCC-----CH---HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34566677766654 22 2333334455677888888888888888888888888865444
No 498
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=28.16 E-value=1.4e+02 Score=30.24 Aligned_cols=73 Identities=18% Similarity=0.029 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHH---HHHHHhcCCCCcchHHHHHHHHH
Q 038516 560 CMVSLLSRAGLLDEAENLIAESPYSEI---RIELWRTLLSTCVAKRNSRMVIQA---AEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
-|+.+|.+.++.+-|+.-..+.-..+| .+..|.... ++...++.+|-+- +.-+..+...+......|.++|+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAav--fR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAV--FRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 356678888888888776655422212 223333221 2233444444433 23333454444444445555554
Q ss_pred h
Q 038516 634 A 634 (708)
Q Consensus 634 ~ 634 (708)
.
T Consensus 311 q 311 (569)
T PF15015_consen 311 Q 311 (569)
T ss_pred H
Confidence 3
No 499
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.96 E-value=1.5e+02 Score=20.97 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 038516 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA 529 (708)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 529 (708)
|....++.++..++...-.++++..+.++...|. .+..+|.--++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~ 51 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRS 51 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 4444555556666555556666666666666552 333444333333
No 500
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=27.85 E-value=2.3e+02 Score=30.62 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHhcccCCChHHHHHHHhccCC------CChhHHHHHHHHHHcCCCch--HHHHHHHHHHHcCCCCCCHhHHHHHHHH
Q 038516 256 ALLDMYSKCSDTQTAFSVFTRIEN------PDLVSWNSMIAGYMENGNGE--KAVDMFVALRRMSLLKPDEYTFAAIISA 327 (708)
Q Consensus 256 ~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~t~~~ll~~ 327 (708)
+|..+|...|++-.+.++++.... .=...+|..|+...+.|.++ +..+-..+..+...+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Q ss_pred HcCCCCccchHHHHHHHHHHC
Q 038516 328 TSALPASAYGKPLHALVIKTG 348 (708)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~ 348 (708)
.....+-....-++.+++...
T Consensus 113 sln~t~~~l~~pvl~~~i~~s 133 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELIHRS 133 (1117)
T ss_pred hcChHhHHhccHHHHHHHHhh
Done!