Query 038516
Match_columns 708
No_of_seqs 633 out of 4037
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 20:39:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.5E-41 1.5E-45 367.9 32.7 501 56-634 61-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.1E-40 2.1E-44 358.9 35.8 481 160-651 63-579 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.2E-26 2.8E-30 232.4 37.7 375 223-637 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-25 5.9E-30 230.0 38.0 353 289-651 6-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 3.1E-27 1E-31 246.3 18.1 212 96-330 6-222 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.7E-26 6E-31 240.6 22.4 183 386-568 28-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.6E-22 5.3E-27 216.5 31.4 437 183-651 8-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 7.4E-23 2.5E-27 219.0 27.8 447 150-629 6-490 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.7E-22 2E-26 208.2 33.4 335 282-647 26-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.6E-21 1.2E-25 207.2 31.6 421 182-651 26-491 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-20 3.8E-25 198.3 29.6 308 315-651 23-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 8E-19 2.7E-23 188.8 37.7 445 81-627 27-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.1E-18 3.7E-23 177.0 31.8 328 317-699 2-357 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 4.3E-16 1.5E-20 171.5 50.8 552 47-643 606-1376(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 3.5E-18 1.2E-22 173.1 30.9 323 282-635 3-353 (359)
16 1xi4_A Clathrin heavy chain; a 99.8 3.4E-15 1.2E-19 164.6 54.5 558 13-639 843-1478(1630)
17 3hym_B Cell division cycle pro 99.8 8E-18 2.7E-22 168.3 23.8 285 350-637 19-320 (330)
18 3hym_B Cell division cycle pro 99.8 2.2E-17 7.6E-22 165.1 27.0 265 383-651 21-299 (330)
19 2xm6_A Protein corresponding t 99.8 3.7E-16 1.3E-20 165.3 35.2 352 264-635 56-453 (490)
20 2ooe_A Cleavage stimulation fa 99.8 1.3E-15 4.5E-20 162.8 38.5 412 215-651 12-492 (530)
21 1fch_A Peroxisomal targeting s 99.8 3.7E-17 1.3E-21 166.4 22.7 279 363-647 35-355 (368)
22 3mkr_A Coatomer subunit epsilo 99.8 9.6E-17 3.3E-21 156.1 23.8 251 361-651 7-264 (291)
23 2xm6_A Protein corresponding t 99.8 4.4E-15 1.5E-19 157.0 38.5 352 280-653 37-434 (490)
24 1b89_A Protein (clathrin heavy 99.7 1.3E-16 4.5E-21 157.8 22.2 236 228-497 15-253 (449)
25 3mkr_A Coatomer subunit epsilo 99.7 5.3E-16 1.8E-20 150.9 26.2 269 326-643 7-286 (291)
26 1b89_A Protein (clathrin heavy 99.7 2.5E-15 8.5E-20 148.8 30.7 353 59-480 14-369 (449)
27 1fch_A Peroxisomal targeting s 99.7 8.6E-17 2.9E-21 163.6 21.0 290 394-701 35-349 (368)
28 4g1t_A Interferon-induced prot 99.7 2.8E-15 9.5E-20 158.1 32.1 326 283-662 137-470 (472)
29 4eqf_A PEX5-related protein; a 99.7 6.3E-17 2.1E-21 164.4 17.4 259 383-647 64-352 (365)
30 3cv0_A Peroxisome targeting si 99.7 3.4E-16 1.2E-20 156.2 19.8 258 386-648 23-312 (327)
31 4eqf_A PEX5-related protein; a 99.7 6.3E-16 2.1E-20 157.0 21.9 230 419-651 65-310 (365)
32 2ooe_A Cleavage stimulation fa 99.7 1.1E-14 3.7E-19 155.7 32.3 387 240-652 3-455 (530)
33 2pl2_A Hypothetical conserved 99.7 1.8E-15 6.1E-20 140.5 18.2 193 451-648 2-211 (217)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.9E-17 1.7E-21 173.5 7.9 147 48-195 127-286 (1134)
35 3uq3_A Heat shock protein STI1 99.7 1.3E-14 4.5E-19 139.1 23.3 218 421-651 7-236 (258)
36 3cv0_A Peroxisome targeting si 99.7 1.5E-14 5.3E-19 144.1 24.1 228 420-651 22-269 (327)
37 4g1t_A Interferon-induced prot 99.6 8.8E-15 3E-19 154.3 20.0 385 182-629 52-471 (472)
38 3spa_A Mtrpol, DNA-directed RN 99.6 6.7E-16 2.3E-20 164.9 9.7 127 451-577 124-258 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.1E-14 1.1E-18 138.0 19.2 245 393-645 14-269 (275)
40 3e4b_A ALGK; tetratricopeptide 99.6 2E-13 6.9E-18 141.8 23.8 372 222-650 9-420 (452)
41 3uq3_A Heat shock protein STI1 99.6 6.7E-14 2.3E-18 134.1 18.6 233 387-631 8-256 (258)
42 2ho1_A Type 4 fimbrial biogene 99.6 2.6E-13 9E-18 129.5 21.6 197 454-651 37-238 (252)
43 3u4t_A TPR repeat-containing p 99.6 1.3E-13 4.3E-18 133.5 18.5 240 391-636 10-269 (272)
44 1ouv_A Conserved hypothetical 99.6 1.9E-12 6.7E-17 125.1 26.8 218 424-653 11-253 (273)
45 2vq2_A PILW, putative fimbrial 99.5 5.8E-13 2E-17 124.5 22.0 198 453-651 7-211 (225)
46 2q7f_A YRRB protein; TPR, prot 99.5 1.1E-13 3.8E-18 131.2 16.3 197 453-651 22-222 (243)
47 2pl2_A Hypothetical conserved 99.5 2.8E-13 9.4E-18 125.7 17.9 191 482-703 2-206 (217)
48 2h6f_A Protein farnesyltransfe 99.5 5.9E-13 2E-17 133.7 20.8 244 386-635 99-366 (382)
49 3vtx_A MAMA; tetratricopeptide 99.5 9.3E-13 3.2E-17 118.7 19.9 166 483-652 3-171 (184)
50 3e4b_A ALGK; tetratricopeptide 99.5 5E-13 1.7E-17 138.9 20.3 344 287-653 8-389 (452)
51 3u4t_A TPR repeat-containing p 99.5 8.6E-13 2.9E-17 127.5 19.5 225 422-651 6-250 (272)
52 2h6f_A Protein farnesyltransfe 99.5 1.4E-12 4.8E-17 131.0 21.3 226 420-651 98-348 (382)
53 2q7f_A YRRB protein; TPR, prot 99.5 4.2E-13 1.4E-17 127.2 16.3 215 384-636 23-241 (243)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.6E-13 3.3E-17 127.4 18.9 218 430-652 16-245 (275)
55 2ho1_A Type 4 fimbrial biogene 99.5 4.3E-12 1.5E-16 121.0 23.0 200 426-627 44-248 (252)
56 4abn_A Tetratricopeptide repea 99.5 3.4E-13 1.2E-17 141.1 16.3 206 436-646 85-316 (474)
57 1ouv_A Conserved hypothetical 99.5 5.3E-12 1.8E-16 122.0 23.4 224 387-623 9-257 (273)
58 2vq2_A PILW, putative fimbrial 99.5 1E-11 3.5E-16 115.9 23.1 205 421-628 10-222 (225)
59 4a1s_A PINS, partner of inscut 99.5 5.6E-13 1.9E-17 137.6 15.3 260 390-650 54-371 (411)
60 3ro2_A PINS homolog, G-protein 99.4 2.2E-12 7.6E-17 128.8 16.4 259 391-651 12-332 (338)
61 4gyw_A UDP-N-acetylglucosamine 99.4 2.7E-12 9.1E-17 139.5 18.1 163 484-650 8-173 (723)
62 4i17_A Hypothetical protein; T 99.4 5E-12 1.7E-16 118.5 17.6 165 485-651 7-209 (228)
63 3sf4_A G-protein-signaling mod 99.4 1.5E-12 5.2E-17 134.0 15.3 193 456-649 89-334 (406)
64 4abn_A Tetratricopeptide repea 99.4 3.4E-12 1.2E-16 133.4 17.9 178 470-651 84-287 (474)
65 3vtx_A MAMA; tetratricopeptide 99.4 6.9E-12 2.4E-16 113.0 17.1 166 453-622 4-175 (184)
66 4e6h_A MRNA 3'-END-processing 99.4 5.4E-10 1.9E-14 119.8 32.9 218 402-623 327-576 (679)
67 3sf4_A G-protein-signaling mod 99.4 8.3E-12 2.8E-16 128.4 18.2 154 486-640 188-365 (406)
68 4e6h_A MRNA 3'-END-processing 99.3 1.4E-09 4.7E-14 116.7 32.7 437 196-653 47-572 (679)
69 4a1s_A PINS, partner of inscut 99.3 4.1E-12 1.4E-16 131.1 12.3 269 320-620 50-375 (411)
70 3as5_A MAMA; tetratricopeptide 99.3 4.3E-11 1.5E-15 107.7 16.8 161 489-651 12-173 (186)
71 2ond_A Cleavage stimulation fa 99.3 1.1E-10 3.8E-15 114.7 20.7 217 401-621 33-274 (308)
72 3nf1_A KLC 1, kinesin light ch 99.3 3.5E-12 1.2E-16 125.8 9.4 197 454-650 69-306 (311)
73 3ulq_A Response regulator aspa 99.3 2.6E-11 8.9E-16 123.6 16.0 194 456-650 145-367 (383)
74 3ulq_A Response regulator aspa 99.3 1.7E-11 5.7E-16 125.1 14.5 293 328-620 22-371 (383)
75 2ond_A Cleavage stimulation fa 99.3 3.6E-10 1.2E-14 111.1 22.8 215 436-654 33-273 (308)
76 4i17_A Hypothetical protein; T 99.3 1.5E-10 5E-15 108.4 18.7 205 418-633 6-225 (228)
77 3qky_A Outer membrane assembly 99.3 1.9E-10 6.5E-15 110.1 19.3 209 453-704 14-254 (261)
78 1hz4_A MALT regulatory protein 99.3 2.1E-09 7.2E-14 109.0 27.3 258 393-650 23-321 (373)
79 3nf1_A KLC 1, kinesin light ch 99.3 1.3E-11 4.3E-16 121.8 9.8 200 421-620 71-310 (311)
80 3as5_A MAMA; tetratricopeptide 99.2 4.2E-10 1.4E-14 101.1 18.9 169 454-624 8-180 (186)
81 3ro2_A PINS homolog, G-protein 99.2 7.6E-11 2.6E-15 117.5 14.8 227 423-650 9-291 (338)
82 3q15_A PSP28, response regulat 99.2 3.1E-10 1.1E-14 115.3 16.5 221 429-650 111-364 (378)
83 3q15_A PSP28, response regulat 99.2 1.3E-09 4.3E-14 110.8 20.8 226 391-617 108-365 (378)
84 3mv2_B Coatomer subunit epsilo 99.2 3.7E-09 1.3E-13 100.3 21.6 177 473-653 85-284 (310)
85 4gyw_A UDP-N-acetylglucosamine 99.2 3.3E-10 1.1E-14 123.1 15.4 133 517-651 5-140 (723)
86 3edt_B KLC 2, kinesin light ch 99.1 5E-10 1.7E-14 108.4 14.5 221 430-650 12-280 (283)
87 1qqe_A Vesicular transport pro 99.1 4.8E-10 1.7E-14 109.1 13.5 201 434-649 32-267 (292)
88 4ga2_A E3 SUMO-protein ligase 99.1 1.5E-10 5.2E-15 99.7 8.6 121 528-650 5-128 (150)
89 3rjv_A Putative SEL1 repeat pr 99.1 7.3E-09 2.5E-13 95.2 20.2 172 473-652 5-198 (212)
90 4ga2_A E3 SUMO-protein ligase 99.1 8.1E-11 2.8E-15 101.5 6.3 140 494-637 6-149 (150)
91 3qou_A Protein YBBN; thioredox 99.1 2.3E-09 8E-14 103.8 17.0 177 469-649 101-282 (287)
92 2yhc_A BAMD, UPF0169 lipoprote 99.1 4.7E-09 1.6E-13 97.6 18.2 179 455-653 5-215 (225)
93 1qqe_A Vesicular transport pro 99.1 1.2E-09 4.1E-14 106.3 14.7 243 335-630 2-282 (292)
94 3qky_A Outer membrane assembly 99.1 2.6E-09 9.1E-14 102.1 16.7 204 418-641 14-251 (261)
95 2pzi_A Probable serine/threoni 99.1 1.8E-09 6.2E-14 118.1 16.9 168 465-637 402-583 (681)
96 4gco_A Protein STI-1; structur 99.1 1.3E-09 4.4E-14 90.5 11.9 101 551-651 8-110 (126)
97 3gyz_A Chaperone protein IPGC; 99.0 1.1E-09 3.9E-14 93.6 11.0 103 550-652 30-134 (151)
98 2vgx_A Chaperone SYCD; alterna 99.0 1.1E-09 3.8E-14 93.9 10.1 107 543-651 10-118 (148)
99 1hz4_A MALT regulatory protein 99.0 5.3E-08 1.8E-12 98.6 23.8 222 428-650 23-281 (373)
100 2fo7_A Synthetic consensus TPR 99.0 5.8E-09 2E-13 87.8 13.9 94 557-650 37-131 (136)
101 3mv2_B Coatomer subunit epsilo 99.0 1.9E-08 6.4E-13 95.5 18.5 195 438-650 85-304 (310)
102 2r5s_A Uncharacterized protein 99.0 3.3E-09 1.1E-13 94.3 12.5 156 491-650 12-172 (176)
103 3edt_B KLC 2, kinesin light ch 99.0 5.3E-09 1.8E-13 101.1 15.1 215 403-617 27-281 (283)
104 3urz_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 93.5 15.5 122 526-650 60-185 (208)
105 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.6E-13 84.1 15.6 133 487-621 3-136 (136)
106 3urz_A Uncharacterized protein 98.9 1.4E-08 4.7E-13 93.1 14.8 155 463-621 13-190 (208)
107 2vsy_A XCC0866; transferase, g 98.9 8.9E-09 3E-13 110.8 15.1 159 467-629 2-169 (568)
108 2xcb_A PCRH, regulatory protei 98.9 1.1E-08 3.8E-13 87.1 12.4 101 551-651 13-115 (142)
109 4gco_A Protein STI-1; structur 98.9 1.2E-08 4E-13 84.7 11.0 115 516-632 8-125 (126)
110 3qou_A Protein YBBN; thioredox 98.9 2.6E-08 8.8E-13 96.4 14.9 131 519-651 116-248 (287)
111 3upv_A Heat shock protein STI1 98.9 1.5E-08 5E-13 84.3 11.3 121 555-695 4-125 (126)
112 1hh8_A P67PHOX, NCF-2, neutrop 98.9 5.3E-08 1.8E-12 89.6 15.8 117 530-650 16-149 (213)
113 2e2e_A Formate-dependent nitri 98.9 1.7E-08 6E-13 89.7 12.0 145 530-698 20-168 (177)
114 2ifu_A Gamma-SNAP; membrane fu 98.9 7.6E-08 2.6E-12 94.2 17.6 218 397-643 4-253 (307)
115 3u3w_A Transcriptional activat 98.9 2.3E-07 7.7E-12 90.2 20.9 161 490-650 80-265 (293)
116 2vsy_A XCC0866; transferase, g 98.9 3.6E-08 1.2E-12 106.0 16.5 144 433-581 3-154 (568)
117 2pzi_A Probable serine/threoni 98.8 1.1E-07 3.7E-12 104.0 19.3 191 430-625 402-610 (681)
118 2qfc_A PLCR protein; TPR, HTH, 98.8 1.2E-07 4.1E-12 92.2 17.6 164 486-650 76-265 (293)
119 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.3E-07 4.5E-12 87.7 16.0 184 420-623 5-219 (225)
120 2uy1_A Cleavage stimulation fa 98.8 1.6E-06 5.5E-11 90.3 25.3 103 228-346 6-117 (493)
121 2r5s_A Uncharacterized protein 98.8 6.9E-08 2.4E-12 85.7 12.8 128 523-652 9-138 (176)
122 3sz7_A HSC70 cochaperone (SGT) 98.8 3.9E-08 1.3E-12 86.1 10.5 97 555-651 11-108 (164)
123 3q49_B STIP1 homology and U bo 98.7 8E-08 2.7E-12 81.1 11.9 99 553-651 7-106 (137)
124 2c2l_A CHIP, carboxy terminus 98.7 2.6E-08 9E-13 95.9 9.8 191 453-651 3-199 (281)
125 3dra_A Protein farnesyltransfe 98.7 9.8E-07 3.4E-11 84.8 20.3 148 499-649 124-285 (306)
126 3rkv_A Putative peptidylprolyl 98.7 6.7E-08 2.3E-12 84.4 11.2 117 558-700 14-150 (162)
127 1p5q_A FKBP52, FK506-binding p 98.7 7.7E-08 2.6E-12 95.3 12.1 160 468-648 127-291 (336)
128 3rjv_A Putative SEL1 repeat pr 98.7 6E-07 2E-11 82.3 17.1 175 438-619 5-199 (212)
129 1hxi_A PEX5, peroxisome target 98.7 5.3E-08 1.8E-12 80.0 9.0 96 557-652 19-115 (121)
130 1a17_A Serine/threonine protei 98.7 1.8E-07 6.2E-12 81.9 13.1 126 523-650 16-145 (166)
131 2uy1_A Cleavage stimulation fa 98.7 6.7E-06 2.3E-10 85.6 26.5 371 193-616 6-412 (493)
132 4f3v_A ESX-1 secretion system 98.7 3E-07 1E-11 86.1 14.4 181 466-651 18-237 (282)
133 2lni_A Stress-induced-phosphop 98.7 2.7E-07 9.2E-12 77.2 13.1 96 555-650 16-112 (133)
134 2ifu_A Gamma-SNAP; membrane fu 98.7 8E-08 2.7E-12 94.1 11.1 197 431-649 3-222 (307)
135 3dra_A Protein farnesyltransfe 98.7 8.5E-06 2.9E-10 78.2 24.8 225 400-630 49-301 (306)
136 1elw_A TPR1-domain of HOP; HOP 98.7 2.5E-07 8.6E-12 75.4 12.4 97 555-651 4-101 (118)
137 3u3w_A Transcriptional activat 98.7 3.3E-06 1.1E-10 81.9 22.5 158 460-617 81-266 (293)
138 2vyi_A SGTA protein; chaperone 98.7 2.1E-07 7.1E-12 77.6 12.1 117 522-639 14-131 (131)
139 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.3E-07 2.8E-11 81.5 17.2 147 457-622 9-155 (213)
140 2hr2_A Hypothetical protein; a 98.7 2E-08 6.7E-13 84.6 5.4 94 558-651 14-131 (159)
141 2lni_A Stress-induced-phosphop 98.6 2.2E-07 7.5E-12 77.7 11.7 113 523-637 19-133 (133)
142 1na0_A Designed protein CTPR3; 98.6 3.7E-07 1.3E-11 75.2 12.9 115 521-636 10-125 (125)
143 4gcn_A Protein STI-1; structur 98.6 1.1E-07 3.9E-12 78.8 9.5 96 555-650 8-111 (127)
144 3gyz_A Chaperone protein IPGC; 98.6 2.9E-07 9.9E-12 78.6 11.6 105 516-622 31-138 (151)
145 3gw4_A Uncharacterized protein 98.6 4.2E-07 1.5E-11 82.6 13.2 128 523-650 29-175 (203)
146 2kck_A TPR repeat; tetratricop 98.6 2.3E-07 7.8E-12 74.8 10.0 99 555-653 6-108 (112)
147 2vyi_A SGTA protein; chaperone 98.6 3.8E-07 1.3E-11 75.9 11.7 98 554-651 11-109 (131)
148 2dba_A Smooth muscle cell asso 98.6 7E-07 2.4E-11 76.3 13.2 96 555-650 28-127 (148)
149 2vgx_A Chaperone SYCD; alterna 98.6 9E-08 3.1E-12 81.9 7.2 115 508-626 10-127 (148)
150 1na0_A Designed protein CTPR3; 98.6 6.8E-07 2.3E-11 73.6 12.3 97 555-651 9-106 (125)
151 2xev_A YBGF; tetratricopeptide 98.6 2.4E-07 8.2E-12 77.1 9.3 93 559-651 6-105 (129)
152 4f3v_A ESX-1 secretion system 98.5 1.4E-06 4.9E-11 81.5 14.6 138 488-629 105-248 (282)
153 2fbn_A 70 kDa peptidylprolyl i 98.5 1.1E-06 3.8E-11 79.6 13.1 121 522-642 40-176 (198)
154 3gw4_A Uncharacterized protein 98.5 6.9E-07 2.4E-11 81.2 11.7 152 466-618 4-177 (203)
155 2e2e_A Formate-dependent nitri 98.5 7.1E-07 2.4E-11 79.1 11.5 128 496-626 21-153 (177)
156 1wao_1 Serine/threonine protei 98.5 6E-07 2E-11 93.4 12.3 115 461-579 13-134 (477)
157 1elr_A TPR2A-domain of HOP; HO 98.5 8E-07 2.7E-11 73.9 10.7 97 555-651 4-108 (131)
158 2fbn_A 70 kDa peptidylprolyl i 98.5 8.4E-07 2.9E-11 80.3 11.5 149 462-614 12-183 (198)
159 1p5q_A FKBP52, FK506-binding p 98.5 5.9E-07 2E-11 88.9 11.4 97 555-651 147-259 (336)
160 3sz7_A HSC70 cochaperone (SGT) 98.5 2.1E-06 7.3E-11 74.9 13.7 107 521-629 12-120 (164)
161 2dba_A Smooth muscle cell asso 98.5 2E-06 6.7E-11 73.4 13.0 111 522-634 30-145 (148)
162 3upv_A Heat shock protein STI1 98.5 1.2E-06 4E-11 72.5 11.0 109 523-633 7-123 (126)
163 1elw_A TPR1-domain of HOP; HOP 98.5 2E-06 6.7E-11 69.9 12.2 109 522-632 6-116 (118)
164 1a17_A Serine/threonine protei 98.5 2.1E-06 7.3E-11 74.9 13.2 97 555-651 13-110 (166)
165 2xcb_A PCRH, regulatory protei 98.5 7.6E-07 2.6E-11 75.6 9.8 106 523-630 21-128 (142)
166 2qfc_A PLCR protein; TPR, HTH, 98.4 3.5E-06 1.2E-10 81.7 15.8 162 456-617 77-266 (293)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2E-06 6.9E-11 89.0 12.4 163 467-650 247-414 (457)
168 3k9i_A BH0479 protein; putativ 98.4 2.9E-07 9.9E-12 75.1 4.7 83 568-650 3-89 (117)
169 1ihg_A Cyclophilin 40; ppiase 98.4 1.6E-06 5.5E-11 86.7 11.0 112 521-650 224-335 (370)
170 1wao_1 Serine/threonine protei 98.3 9.6E-07 3.3E-11 91.9 9.4 116 529-646 15-134 (477)
171 3q49_B STIP1 homology and U bo 98.3 2.6E-06 8.7E-11 71.6 10.4 112 519-632 8-126 (137)
172 4b4t_Q 26S proteasome regulato 98.3 4.1E-06 1.4E-10 86.6 13.5 163 487-649 57-243 (434)
173 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 3.3E-06 1.1E-10 87.4 12.5 95 557-651 270-380 (457)
174 2c2l_A CHIP, carboxy terminus 98.3 3.3E-06 1.1E-10 81.2 11.2 113 519-633 3-117 (281)
175 1ihg_A Cyclophilin 40; ppiase 98.3 4.2E-06 1.4E-10 83.7 12.2 139 485-644 223-363 (370)
176 2if4_A ATFKBP42; FKBP-like, al 98.3 1.3E-06 4.3E-11 86.5 8.3 149 485-652 179-329 (338)
177 3q7a_A Farnesyltransferase alp 98.3 4.5E-05 1.5E-09 74.0 18.8 210 437-650 72-330 (349)
178 3ro3_A PINS homolog, G-protein 98.3 2.9E-06 1E-10 73.5 9.4 94 557-650 51-157 (164)
179 1dce_A Protein (RAB geranylger 98.3 3.2E-05 1.1E-09 81.9 18.8 168 469-640 44-244 (567)
180 3q7a_A Farnesyltransferase alp 98.3 0.00025 8.4E-09 68.8 23.3 230 396-631 66-346 (349)
181 2hr2_A Hypothetical protein; a 98.3 1.9E-06 6.5E-11 72.6 7.4 73 557-629 59-143 (159)
182 3k9i_A BH0479 protein; putativ 98.3 9.9E-07 3.4E-11 71.9 5.5 94 533-626 3-99 (117)
183 1hxi_A PEX5, peroxisome target 98.2 3.9E-06 1.3E-10 68.7 8.9 98 523-622 20-119 (121)
184 3rkv_A Putative peptidylprolyl 98.2 3.4E-06 1.2E-10 73.4 9.1 80 555-634 63-144 (162)
185 2l6j_A TPR repeat-containing p 98.2 5.5E-07 1.9E-11 72.5 3.3 94 554-647 3-103 (111)
186 4gcn_A Protein STI-1; structur 98.2 8.8E-06 3E-10 67.2 10.7 60 487-548 10-70 (127)
187 2xev_A YBGF; tetratricopeptide 98.2 1.1E-05 3.7E-10 66.8 11.3 104 526-631 8-119 (129)
188 3dss_A Geranylgeranyl transfer 98.2 0.00019 6.4E-09 69.3 20.7 180 470-651 90-304 (331)
189 2kck_A TPR repeat; tetratricop 98.2 1E-05 3.5E-10 64.8 10.3 101 521-622 7-111 (112)
190 1elr_A TPR2A-domain of HOP; HO 98.2 1.3E-05 4.5E-10 66.3 11.2 77 557-634 40-124 (131)
191 3n71_A Histone lysine methyltr 98.2 1.9E-05 6.4E-10 81.5 14.5 121 564-702 318-455 (490)
192 3dss_A Geranylgeranyl transfer 98.2 0.0003 1E-08 67.9 21.9 193 435-632 90-319 (331)
193 3n71_A Histone lysine methyltr 98.2 4.7E-06 1.6E-10 85.9 9.6 123 530-652 319-465 (490)
194 3bee_A Putative YFRE protein; 98.2 2.1E-05 7.1E-10 60.2 10.7 69 585-653 3-74 (93)
195 3ma5_A Tetratricopeptide repea 98.2 8.7E-06 3E-10 63.9 8.9 66 586-651 5-70 (100)
196 2if4_A ATFKBP42; FKBP-like, al 98.1 2.7E-06 9.1E-11 84.2 6.7 115 520-651 179-293 (338)
197 3ro3_A PINS homolog, G-protein 98.1 1.4E-05 4.7E-10 69.2 10.0 133 487-619 11-160 (164)
198 1na3_A Designed protein CTPR2; 98.1 1.4E-05 4.6E-10 61.3 8.7 82 555-636 9-91 (91)
199 2kat_A Uncharacterized protein 98.1 9.6E-06 3.3E-10 65.6 8.2 79 573-651 3-82 (115)
200 1zu2_A Mitochondrial import re 98.1 1.8E-06 6.2E-11 72.5 3.5 86 567-652 14-121 (158)
201 2l6j_A TPR repeat-containing p 98.1 3.3E-05 1.1E-09 61.7 11.1 66 586-651 2-67 (111)
202 4b4t_Q 26S proteasome regulato 98.0 6.7E-05 2.3E-09 77.3 14.9 158 493-650 12-203 (434)
203 1klx_A Cysteine rich protein B 97.9 0.0001 3.4E-09 61.7 11.8 110 535-652 10-127 (138)
204 3qwp_A SET and MYND domain-con 97.9 5.5E-05 1.9E-09 76.8 11.9 115 564-696 296-427 (429)
205 1dce_A Protein (RAB geranylger 97.8 0.00018 6E-09 76.2 14.5 148 499-650 43-220 (567)
206 1na3_A Designed protein CTPR2; 97.8 0.0001 3.5E-09 56.2 8.9 65 587-651 8-72 (91)
207 3qww_A SET and MYND domain-con 97.8 5.9E-05 2E-09 76.4 9.4 84 589-690 341-432 (433)
208 1zu2_A Mitochondrial import re 97.8 3.5E-05 1.2E-09 64.7 6.0 105 496-626 13-129 (158)
209 1klx_A Cysteine rich protein B 97.7 0.00063 2.2E-08 56.8 12.4 112 499-619 9-128 (138)
210 3lvg_A Clathrin heavy chain 1; 97.6 8.2E-06 2.8E-10 79.9 -0.4 237 47-302 53-324 (624)
211 3lvg_A Clathrin heavy chain 1; 97.6 5.3E-05 1.8E-09 74.3 4.8 239 148-405 52-325 (624)
212 1pc2_A Mitochondria fission pr 97.5 0.00043 1.5E-08 57.4 9.2 65 586-650 30-99 (152)
213 2kat_A Uncharacterized protein 97.5 0.00036 1.2E-08 56.1 8.3 83 538-622 3-87 (115)
214 2kc7_A BFR218_protein; tetratr 97.5 0.00043 1.5E-08 53.8 8.4 65 561-625 6-72 (99)
215 3ly7_A Transcriptional activat 97.4 0.0013 4.6E-08 63.5 12.7 144 481-651 190-339 (372)
216 3ly7_A Transcriptional activat 97.4 0.0052 1.8E-07 59.4 16.5 146 450-623 190-345 (372)
217 2kc7_A BFR218_protein; tetratr 97.3 0.00097 3.3E-08 51.7 8.6 51 529-581 9-61 (99)
218 3qww_A SET and MYND domain-con 97.2 0.0017 5.7E-08 65.8 10.5 93 532-624 310-423 (433)
219 3qwp_A SET and MYND domain-con 97.1 0.0036 1.2E-07 63.4 12.2 97 530-626 297-414 (429)
220 3ma5_A Tetratricopeptide repea 97.1 0.0025 8.6E-08 49.5 8.6 63 484-548 6-69 (100)
221 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0057 2E-07 47.8 9.7 75 555-629 5-87 (104)
222 1wy6_A Hypothetical protein ST 96.8 0.1 3.5E-06 41.3 15.3 141 495-654 17-157 (172)
223 1pc2_A Mitochondria fission pr 96.8 0.0052 1.8E-07 50.9 8.2 91 535-626 13-109 (152)
224 3u64_A Protein TP_0956; tetrat 96.8 0.0034 1.2E-07 58.0 7.8 88 571-658 179-276 (301)
225 1nzn_A CGI-135 protein, fissio 96.5 0.012 4.1E-07 46.8 8.4 70 553-622 33-108 (126)
226 2v5f_A Prolyl 4-hydroxylase su 96.5 0.022 7.5E-07 44.4 9.9 65 587-651 4-75 (104)
227 3bee_A Putative YFRE protein; 96.3 0.03 1E-06 42.4 9.3 71 553-623 4-78 (93)
228 1qsa_A Protein (soluble lytic 96.2 1.2 4.1E-05 47.0 23.9 124 499-629 228-356 (618)
229 3o48_A Mitochondria fission 1 96.2 0.04 1.4E-06 43.9 9.5 88 586-699 38-129 (134)
230 1y8m_A FIS1; mitochondria, unk 96.1 0.13 4.5E-06 41.6 12.2 65 586-650 37-105 (144)
231 1nzn_A CGI-135 protein, fissio 96.0 0.064 2.2E-06 42.6 10.2 83 497-581 13-100 (126)
232 4gns_B Protein CSD3, chitin bi 95.9 0.022 7.7E-07 61.1 9.6 59 590-648 339-397 (754)
233 3mkq_A Coatomer beta'-subunit; 95.9 0.18 6.1E-06 56.4 17.3 153 394-581 609-762 (814)
234 3mkq_B Coatomer subunit alpha; 95.7 0.36 1.2E-05 41.0 14.0 127 463-613 14-140 (177)
235 3u64_A Protein TP_0956; tetrat 95.3 0.021 7.2E-07 52.9 5.7 84 536-621 179-273 (301)
236 3mkq_A Coatomer beta'-subunit; 95.3 0.11 3.8E-06 58.1 12.8 21 626-646 753-773 (814)
237 4ady_A RPN2, 26S proteasome re 94.1 8.8 0.0003 42.3 29.9 255 261-522 384-663 (963)
238 4h7y_A Dual specificity protei 93.5 1.1 3.7E-05 36.6 11.0 112 482-624 10-130 (161)
239 3mkq_B Coatomer subunit alpha; 93.4 3.2 0.00011 35.2 16.6 127 430-582 16-142 (177)
240 4h7y_A Dual specificity protei 93.3 0.28 9.6E-06 40.0 7.3 54 600-653 72-125 (161)
241 1wy6_A Hypothetical protein ST 92.3 3.6 0.00012 32.8 13.6 139 396-552 19-157 (172)
242 3ffl_A Anaphase-promoting comp 92.1 0.43 1.5E-05 39.8 7.1 121 514-648 12-148 (167)
243 1zbp_A Hypothetical protein VP 90.9 1.9 6.7E-05 39.2 10.6 157 493-671 5-168 (273)
244 1y8m_A FIS1; mitochondria, unk 90.7 5.8 0.0002 32.1 12.1 74 552-625 36-114 (144)
245 3ffl_A Anaphase-promoting comp 90.5 1.8 6.2E-05 36.1 9.3 121 461-594 27-161 (167)
246 3o48_A Mitochondria fission 1 90.1 4.8 0.00016 32.1 11.0 76 551-626 36-116 (134)
247 4b4t_P 26S proteasome regulato 89.9 8.4 0.00029 38.9 15.9 91 558-648 140-244 (445)
248 2ff4_A Probable regulatory pro 89.2 0.91 3.1E-05 45.1 8.0 60 591-650 174-233 (388)
249 4ady_A RPN2, 26S proteasome re 87.8 37 0.0013 37.5 34.3 261 326-591 382-664 (963)
250 2uwj_G Type III export protein 87.1 7.5 0.00026 28.9 9.3 86 434-524 21-106 (115)
251 2p58_C Putative type III secre 86.8 8 0.00027 28.8 9.6 86 434-524 22-107 (116)
252 2ff4_A Probable regulatory pro 86.4 4.1 0.00014 40.3 10.8 70 488-559 174-249 (388)
253 2uwj_G Type III export protein 86.3 4.5 0.00015 30.0 7.7 79 129-211 20-98 (115)
254 4fhn_B Nucleoporin NUP120; pro 86.0 5.5 0.00019 46.0 13.1 142 425-573 818-989 (1139)
255 2p58_C Putative type III secre 84.8 4.8 0.00016 29.9 7.3 79 129-211 21-99 (116)
256 3lpz_A GET4 (YOR164C homolog); 84.7 28 0.00095 33.1 23.1 183 16-244 19-215 (336)
257 3lpz_A GET4 (YOR164C homolog); 82.3 35 0.0012 32.4 23.3 165 458-650 39-215 (336)
258 1zbp_A Hypothetical protein VP 81.5 1.7 5.7E-05 39.6 4.9 60 563-622 5-65 (273)
259 4b4t_P 26S proteasome regulato 81.5 47 0.0016 33.4 21.8 183 398-581 30-244 (445)
260 1v54_E Cytochrome C oxidase po 81.4 7.3 0.00025 29.1 7.3 61 501-562 26-86 (109)
261 4gns_B Protein CSD3, chitin bi 80.2 12 0.0004 40.4 11.7 29 624-652 615-643 (754)
262 1qsa_A Protein (soluble lytic 78.4 71 0.0024 33.6 32.0 228 398-642 228-470 (618)
263 4fhn_B Nucleoporin NUP120; pro 76.9 27 0.00092 40.3 14.4 55 558-612 902-962 (1139)
264 2wpv_A GET4, UPF0363 protein Y 75.8 54 0.0018 30.9 20.5 167 355-547 35-215 (312)
265 1v54_E Cytochrome C oxidase po 75.6 23 0.00079 26.6 8.8 62 399-461 25-86 (109)
266 1wdy_A 2-5A-dependent ribonucl 75.3 49 0.0017 30.2 14.3 56 14-74 7-62 (285)
267 3twe_A Alpha4H; unknown functi 74.9 3.5 0.00012 20.8 2.7 23 680-702 2-24 (27)
268 3eiq_C Programmed cell death p 74.2 13 0.00043 35.9 9.0 62 153-214 220-286 (358)
269 4b4t_R RPN7, 26S proteasome re 73.6 13 0.00046 37.2 9.5 60 522-581 133-194 (429)
270 2y69_E Cytochrome C oxidase su 73.4 14 0.00049 29.3 7.3 59 503-562 71-129 (152)
271 1wdy_A 2-5A-dependent ribonucl 73.1 50 0.0017 30.2 13.2 117 52-177 6-129 (285)
272 3kea_A K1L; tropism, ANK repea 71.9 55 0.0019 30.3 13.0 18 56-73 36-53 (285)
273 3esl_A Checkpoint serine/threo 71.5 31 0.0011 29.8 9.8 51 602-652 93-145 (202)
274 2wpv_A GET4, UPF0363 protein Y 70.7 71 0.0024 30.0 23.3 167 457-650 36-216 (312)
275 3txn_A 26S proteasome regulato 67.8 95 0.0033 30.4 19.8 27 355-381 21-47 (394)
276 2qx5_A Nucleoporin NIC96; mRNA 66.0 42 0.0015 35.5 11.5 80 390-480 300-382 (661)
277 3ltm_A Alpha-REP4; protein eng 65.7 67 0.0023 27.8 17.1 60 249-309 124-183 (211)
278 3eu9_A Huntingtin-interacting 64.5 70 0.0024 28.1 11.9 14 161-174 117-130 (240)
279 3ltj_A Alpharep-4; protein eng 62.9 73 0.0025 27.3 17.4 134 155-296 33-166 (201)
280 2y69_E Cytochrome C oxidase su 62.6 57 0.002 26.0 8.8 62 399-461 68-129 (152)
281 3eu9_A Huntingtin-interacting 61.0 44 0.0015 29.6 9.7 119 16-149 13-136 (240)
282 4a1g_A Mitotic checkpoint seri 60.4 56 0.0019 26.8 8.8 79 572-653 52-132 (152)
283 4b4t_R RPN7, 26S proteasome re 58.9 24 0.00081 35.4 7.9 94 456-549 133-237 (429)
284 3ltj_A Alpharep-4; protein eng 55.1 99 0.0034 26.4 17.7 33 351-383 26-58 (201)
285 2wvi_A Mitotic checkpoint seri 52.8 81 0.0028 26.2 8.7 47 607-653 79-127 (164)
286 3ltm_A Alpha-REP4; protein eng 51.5 1.2E+02 0.004 26.2 17.4 17 352-368 32-48 (211)
287 1ya0_A SMG-7 transcript varian 50.8 43 0.0015 34.1 8.2 48 599-646 163-210 (497)
288 2zu6_B Programmed cell death p 50.3 1E+02 0.0035 28.9 10.2 57 356-412 6-66 (307)
289 2nsz_A Programmed cell death p 50.1 32 0.0011 27.4 5.8 63 154-216 11-78 (129)
290 1n11_A Ankyrin; clathrin, BAND 49.9 2E+02 0.0068 28.3 13.4 20 54-73 50-69 (437)
291 3ljn_A Hypothetical protein; a 49.7 1.6E+02 0.0055 28.1 12.3 91 14-111 22-112 (364)
292 3eiq_C Programmed cell death p 48.9 1.3E+02 0.0044 29.0 10.7 77 355-432 56-136 (358)
293 3hra_A Ankyrin repeat family p 48.7 1.2E+02 0.0042 25.6 10.5 17 59-75 13-29 (201)
294 3jxi_A Vanilloid receptor-rela 48.6 55 0.0019 29.5 8.3 86 88-175 11-115 (260)
295 1k1a_A B-cell lymphoma 3-encod 46.2 1.5E+02 0.0052 25.9 12.5 56 16-73 13-68 (241)
296 3esl_A Checkpoint serine/threo 45.5 1.5E+02 0.0051 25.6 10.8 54 500-553 94-148 (202)
297 2nsz_A Programmed cell death p 44.5 33 0.0011 27.3 5.0 61 51-111 10-74 (129)
298 2ion_A PDCD4, programmed cell 43.0 27 0.00091 28.8 4.4 64 153-216 12-80 (152)
299 3kea_A K1L; tropism, ANK repea 42.3 2E+02 0.0069 26.3 11.2 142 86-240 35-182 (285)
300 3bqo_A Telomeric repeat-bindin 41.9 1E+02 0.0035 26.4 7.6 72 571-642 94-171 (211)
301 3kae_A CDC27, possible protein 41.7 1.5E+02 0.0053 24.7 10.3 80 565-648 43-140 (242)
302 2fu4_A Ferric uptake regulatio 41.6 70 0.0024 22.7 6.1 62 104-166 6-68 (83)
303 1k1a_A B-cell lymphoma 3-encod 40.1 1.9E+02 0.0065 25.3 11.7 23 90-113 17-39 (241)
304 2zu6_B Programmed cell death p 39.6 32 0.0011 32.3 4.9 27 52-78 7-33 (307)
305 1oyz_A Hypothetical protein YI 39.5 2.2E+02 0.0075 25.8 19.2 248 341-600 25-279 (280)
306 3u84_A Menin; MLL, JUND, ledgf 39.3 1.3E+02 0.0045 29.1 8.7 54 619-693 315-369 (550)
307 4b4t_S RPN3, 26S proteasome re 38.9 61 0.0021 32.9 7.0 69 555-623 231-305 (523)
308 4b4t_S RPN3, 26S proteasome re 38.9 92 0.0032 31.6 8.3 62 520-581 231-296 (523)
309 3re2_A Predicted protein; meni 37.6 1.5E+02 0.0053 28.1 8.7 55 619-694 293-348 (472)
310 4g3b_A Alpha4F3D; alpha helix, 37.5 41 0.0014 16.8 3.1 22 680-701 2-23 (26)
311 2d2s_A Exocyst complex compone 36.8 1.2E+02 0.0041 27.1 8.0 27 451-477 88-114 (235)
312 3b7b_A Euchromatic histone-lys 36.4 1.8E+02 0.0061 25.4 9.6 16 160-175 84-99 (237)
313 3bqo_A Telomeric repeat-bindin 35.8 2E+02 0.0068 24.7 8.4 45 267-311 94-146 (211)
314 1bd8_A P19INK4D CDK4/6 inhibit 35.7 1.1E+02 0.0039 24.5 7.5 18 158-175 106-123 (156)
315 1n11_A Ankyrin; clathrin, BAND 35.2 3.3E+02 0.011 26.7 15.1 206 53-276 16-234 (437)
316 2rfa_A Transient receptor pote 34.6 2.3E+02 0.0078 24.6 10.3 24 189-212 159-182 (232)
317 3mv2_A Coatomer subunit alpha; 33.7 3.1E+02 0.01 25.8 14.2 50 588-651 207-256 (325)
318 2w57_A Ferric uptake regulatio 33.5 99 0.0034 25.2 6.5 64 103-167 5-69 (150)
319 3hra_A Ankyrin repeat family p 32.1 2.1E+02 0.0073 24.0 9.1 122 121-251 42-173 (201)
320 3l6a_A Eukaryotic translation 31.8 46 0.0016 32.3 4.7 61 51-111 15-79 (364)
321 2d2s_A Exocyst complex compone 31.5 1.8E+02 0.0061 25.9 8.2 22 86-108 25-46 (235)
322 2ion_A PDCD4, programmed cell 30.9 40 0.0014 27.7 3.6 26 52-77 13-38 (152)
323 4gq2_M Nucleoporin NUP120; bet 29.8 3.3E+02 0.011 30.5 11.9 27 590-616 899-925 (950)
324 3d9h_A CDNA FLJ77766, highly s 29.3 2.3E+02 0.0077 25.9 9.2 157 8-175 11-179 (285)
325 2xig_A Ferric uptake regulatio 28.8 1.1E+02 0.0039 24.8 6.1 63 103-166 15-77 (150)
326 1mzb_A Ferric uptake regulatio 28.8 97 0.0033 24.7 5.5 62 104-166 7-69 (136)
327 3aji_A 26S proteasome non-ATPa 27.9 2.9E+02 0.01 23.8 10.9 19 55-73 10-28 (231)
328 1ug3_A EIF4GI, eukaryotic prot 27.7 1.2E+02 0.0042 28.9 7.0 61 51-111 14-77 (339)
329 2r9g_A AAA ATPase, central reg 26.6 3.1E+02 0.011 23.6 8.9 55 395-450 25-84 (204)
330 4a1g_A Mitotic checkpoint seri 26.0 2.7E+02 0.0093 22.7 9.9 50 504-553 84-134 (152)
331 4aez_C MAD3, mitotic spindle c 25.9 2.1E+02 0.0072 25.2 7.3 45 607-651 133-179 (223)
332 3ljn_A Hypothetical protein; a 25.8 2.3E+02 0.008 26.9 8.9 92 52-149 21-115 (364)
333 3kae_A CDC27, possible protein 25.5 3E+02 0.01 23.1 15.9 176 465-653 44-239 (242)
334 2r9g_A AAA ATPase, central reg 25.2 3.3E+02 0.011 23.4 8.7 39 496-535 25-63 (204)
335 3jxi_A Vanilloid receptor-rela 25.1 1.5E+02 0.0053 26.4 7.1 53 122-174 9-70 (260)
336 3i5p_A Nucleoporin NUP170; hel 24.6 5.3E+02 0.018 26.3 11.1 35 617-651 212-246 (525)
337 3ygs_P Procaspase 9; apoptosis 24.5 2E+02 0.007 21.2 6.2 61 30-99 25-87 (97)
338 3d9h_A CDNA FLJ77766, highly s 24.2 2.4E+02 0.0081 25.7 8.3 118 48-175 12-147 (285)
339 3b7b_A Euchromatic histone-lys 23.7 3.6E+02 0.012 23.3 10.1 53 15-73 14-66 (237)
340 2fu4_A Ferric uptake regulatio 23.7 1.5E+02 0.005 20.8 5.2 59 206-265 7-66 (83)
341 2fe3_A Peroxide operon regulat 23.6 1.3E+02 0.0044 24.3 5.4 44 187-230 27-70 (145)
342 2etb_A Transient receptor pote 23.5 84 0.0029 28.2 4.9 23 125-147 9-31 (256)
343 2wvi_A Mitotic checkpoint seri 21.9 3.4E+02 0.012 22.5 10.5 50 504-553 79-129 (164)
344 2cfu_A SDSA1; SDS-hydrolase, l 21.6 1.8E+02 0.0062 30.9 7.4 64 572-639 437-500 (658)
345 3aji_A 26S proteasome non-ATPa 21.3 3.9E+02 0.013 22.9 11.4 88 16-114 10-100 (231)
346 3bge_A Predicted ATPase; struc 21.1 3.3E+02 0.011 23.3 7.3 90 390-479 10-107 (201)
347 3ctd_A Putative ATPase, AAA fa 21.1 4.1E+02 0.014 23.1 8.2 62 389-450 37-106 (213)
348 4ets_A Ferric uptake regulatio 21.0 1.9E+02 0.0065 23.9 6.0 63 101-164 19-83 (162)
349 3eyy_A Putative iron uptake re 20.6 1E+02 0.0035 25.0 4.2 62 101-164 5-66 (145)
350 2b7e_A PRE-mRNA processing pro 20.5 86 0.003 20.7 2.9 34 197-230 2-36 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-41 Score=367.90 Aligned_cols=501 Identities=8% Similarity=-0.060 Sum_probs=360.2
Q ss_pred HHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHH
Q 038516 56 SMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGS 135 (708)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 135 (708)
..+.+.|.+..+...|..++.+++..|+.++..+.+.|+ ++.|+.+|++|.. ..|+..++..++.+|...|+++.|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQ-YKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccC-chHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 346678888999999999998899999999999999999 9999999999985 4678899999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-------------------CcccHHHHHHHHhcCCC
Q 038516 136 LLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-------------------DAVAWNSIILGNFKNDK 196 (708)
Q Consensus 136 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~ 196 (708)
.+++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999987644 688999999999999999999999999964433 36789999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCc-chHHHHHHHHhccCChhH--HHHH-HHHHHHhCCCCChhhHHHHHHhcccCCChHHHHH
Q 038516 197 MKEGLSLFGAMVGSGVNPTQ-FSYSMLLNACSRMGNFVC--GKVI-HARVIISNTQVDLPLENALLDMYSKCSDTQTAFS 272 (708)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 272 (708)
+++|+++|++|.+. .|+. ..+..+...+...+..+. +..+ +..+...+..+...+++.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999999875 3543 334444433332222111 1111 3334333444455566777888888888888888
Q ss_pred HHhccCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516 273 VFTRIEN--PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD 350 (708)
Q Consensus 273 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 350 (708)
+|+++.+ ++..+|+.++..|.+.|++++|..+|+++.+. .+.+..++..++.++...|++++|..+++.+.+.. +
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 8888877 78888888888888888888888888888765 23355566666666666666666666666665433 3
Q ss_pred CchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHh
Q 038516 351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACA 430 (708)
Q Consensus 351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 430 (708)
.+..+++ .++..|.+.|++++|.++|+++.+.. |
T Consensus 371 ~~~~~~~-------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~--~------------- 404 (597)
T 2xpi_A 371 EKAVTWL-------------------------------AVGIYYLCVNKISEARRYFSKSSTMD--P------------- 404 (597)
T ss_dssp TSHHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------
T ss_pred ccHHHHH-------------------------------HHHHHHHHhccHHHHHHHHHHHHHhC--C-------------
Confidence 3444444 44455555556666666666655421 1
Q ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHH
Q 038516 431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMV 507 (708)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 507 (708)
.+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|.++
T Consensus 405 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 463 (597)
T 2xpi_A 405 ---------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463 (597)
T ss_dssp ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 123344455555555566666666555542 34667788888888888888888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 508 FEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 508 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
|+++.+.. +.+..+|..+...|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++
T Consensus 464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888753 336777888888888888888888888888765 55777 678999999999999999999999887
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 582 P-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 582 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
. ..+.+...|..++..|...|++++|...++++++++|+++.++..|+++|..
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 2 3335789999999999999999999999999999999999999999988743
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-40 Score=358.88 Aligned_cols=481 Identities=10% Similarity=-0.032 Sum_probs=399.4
Q ss_pred hHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 038516 160 YSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIH 239 (708)
Q Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 239 (708)
+.+.|....+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45667778888888888888899999999999999999999999999985 5678889999999999999999999999
Q ss_pred HHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCC-------------------ChhHHHHHHHHHHcCCCchH
Q 038516 240 ARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENP-------------------DLVSWNSMIAGYMENGNGEK 300 (708)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 300 (708)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 987543 678899999999999999999999999965433 47899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchH--HH-HHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHh
Q 038516 301 AVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGK--PL-HALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFM 377 (708)
Q Consensus 301 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 377 (708)
|.++|++|.+. .+.+...+..+...+...+..+... .+ +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 99999999986 2334455555554444333222111 11 3344444444556677778889999999999999999
Q ss_pred hcCC--CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516 378 LIAE--KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS 455 (708)
Q Consensus 378 ~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 455 (708)
++.+ ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 9987 688899999999999999999999999998765 3366788999999999999999999999998654 56788
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH 532 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 532 (708)
+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999884 4568899999999999999999999999999863 4478889999999999
Q ss_pred cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCC--HHHHHHHHHHHHhcCC
Q 038516 533 SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIR--IELWRTLLSTCVAKRN 603 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~--~~~~~~l~~~~~~~~~ 603 (708)
.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++++++ +.. |+ ...|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHHHHhcC
Confidence 999999999999998742 235788999999999999999999999988 224 55 7899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 604 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+++|...++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.2e-26 Score=232.40 Aligned_cols=375 Identities=11% Similarity=0.028 Sum_probs=261.5
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCch
Q 038516 223 LNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGE 299 (708)
Q Consensus 223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 299 (708)
...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556677777777776666553 23344555555556666666666666554432 34455666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhc
Q 038516 300 KAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLI 379 (708)
Q Consensus 300 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 379 (708)
+|+..|+++... .+.+..+|..+..++...|+++.|...+..+.+.. |.
T Consensus 85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~---------------------------- 133 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PD---------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TT----------------------------
T ss_pred HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------------------------
Confidence 666666665543 12223334444444444444444444444444332 11
Q ss_pred CCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 038516 380 AEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGS 459 (708)
Q Consensus 380 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 459 (708)
+...+..+...+...|++++|.+.|+++.+.. +-+..++..+...+...|++++|...++.+.+.+ +.+...+..
T Consensus 134 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 208 (388)
T 1w3b_A 134 ---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN 208 (388)
T ss_dssp ---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred ---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 22334445555566666666666666666542 2234566666667777777777777777776654 345667778
Q ss_pred HHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc
Q 038516 460 LVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGL 535 (708)
Q Consensus 460 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~ 535 (708)
+...+...|++++|...|++.. +.+..+|..+...|...|++++|+..|+++.+. .| +..++..+...+.+.|+
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 286 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGS 286 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Confidence 8888889999999999888764 346788899999999999999999999999985 45 46678888889999999
Q ss_pred HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038516 536 VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQV 614 (708)
Q Consensus 536 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 614 (708)
+++|.+.|+++.+. .+.+..++..++..+.+.|++++|.+.++++.. .|.+...+..++..+...|++++|...++++
T Consensus 287 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 287 VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999873 234577888999999999999999999998843 3345788999999999999999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCC
Q 038516 615 LRLDPEDGTTHILLSNLYAATGR 637 (708)
Q Consensus 615 ~~~~p~~~~~~~~l~~~~~~~g~ 637 (708)
++++|+++.+|..++.++...|+
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.7e-25 Score=229.99 Aligned_cols=353 Identities=15% Similarity=0.103 Sum_probs=295.8
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCC
Q 038516 289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD 368 (708)
Q Consensus 289 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 368 (708)
...+.+.|++++|...+..+.+. .+.+...+..+...+...|+++.+...++...+.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 44566778888888888777765 34445555666666777788888888877777664 6677788888888888888
Q ss_pred ChhHHHHHhhcCC--C-CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHH
Q 038516 369 AESPQKVFMLIAE--K-DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQ 444 (708)
Q Consensus 369 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~ 444 (708)
+++|...|+++.. | +...|..+..++.+.|++++|...|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888887653 2 4456888888899999999999999988875 3443 4566677778899999999999999
Q ss_pred HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-Ch
Q 038516 445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DE 520 (708)
Q Consensus 445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 520 (708)
+.+.. +.+...+..+...+.+.|++++|...|+++. +.+...|..+...+...|++++|+..++++... .| +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 98874 4467889999999999999999999999885 346778999999999999999999999999985 56 46
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTC 598 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 598 (708)
.++..+..++...|++++|.+.|+++.+. .|+ ...+..++..+.+.|++++|.+.++++ ...+.+...|..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 77888999999999999999999999983 453 678999999999999999999999998 33335788999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
...|++++|...+++++++.|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.1e-27 Score=246.31 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=158.4
Q ss_pred hHHHHHHHHHHHHcCCCCCcc-hHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhc
Q 038516 96 AHLTFRLIDQMEFECLRPNGL-TFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFG 174 (708)
Q Consensus 96 ~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 174 (708)
...+..+.+++.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+....+
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----- 80 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----- 80 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----
Confidence 455667778888888776554 58889999999999999999999999999999999999999999887754322
Q ss_pred cCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhH
Q 038516 175 LIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLE 254 (708)
Q Consensus 175 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 254 (708)
.+.+..+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 234567889999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC
Q 038516 255 NALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA 330 (708)
Q Consensus 255 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 330 (708)
+.+|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|++++|.++|++|++. +..|+..||+.++..++.
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777653 66677777777777777777777777777766 667777777766666554
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.7e-26 Score=240.61 Aligned_cols=183 Identities=16% Similarity=0.197 Sum_probs=171.5
Q ss_pred eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHhCCCCchhH
Q 038516 386 LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLA---------ILKQGEMIHSQAEKTGHGVEMSV 456 (708)
Q Consensus 386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~ 456 (708)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+ .++.|.++++.|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 466778899999999999999999999999999999999999998654 47899999999999999999999
Q ss_pred HHHHHHhhHhcCCHHHHHHHHhhCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 038516 457 CGSLVDMYAKNGDLRAAESIFSQVL----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH 532 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 532 (708)
|++|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999984 699999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516 533 SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA 568 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (708)
.|++++|.++|++|.+.|..|+..||+.++..+...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-22 Score=216.50 Aligned_cols=437 Identities=11% Similarity=-0.028 Sum_probs=289.3
Q ss_pred cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcc
Q 038516 183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYS 262 (708)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (708)
.|......+.+.|++++|+..|+++.+.. |+...+..+..++...|++++|...++.+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45556667777777888888777777643 677777777777777777777777777777654 234445555555555
Q ss_pred cCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHH
Q 038516 263 KCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKP 339 (708)
Q Consensus 263 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 339 (708)
..|++++|...|+++.+ ++......++..+........+.+.+..+... +..|+...+..-....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~----------- 152 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERK----------- 152 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHH-----------
Confidence 55555555555554432 12222222222222222222222222222211 1111111111000000
Q ss_pred HHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC-CEeeehhhHHHHh---cCCChHHHHHHHHHHhH---
Q 038516 340 LHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK-DIVLWTEMIIGHS---RMGDGECAIKLFCKMCR--- 412 (708)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~--- 412 (708)
......|+.... ..+.......... ..+..+ +...+......+. +.|++++|...|+++.+
T Consensus 153 -----~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 220 (514)
T 2gw1_A 153 -----DKQENLPSVTSM----ASFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE 220 (514)
T ss_dssp ---------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred -----hhccCCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence 000011111111 1111111100000 000011 1223333334344 38999999999999887
Q ss_pred --CCCc--------cCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-
Q 038516 413 --EGLK--------CDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL- 481 (708)
Q Consensus 413 --~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 481 (708)
..-. .+..++..+...+...|++++|...++.+.+.... ...+..+...+...|++++|...|+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 298 (514)
T 2gw1_A 221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALK 298 (514)
T ss_dssp HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence 3112 23456777778888999999999999999887644 8888899999999999999999999874
Q ss_pred --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHH
Q 038516 482 --HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYS 559 (708)
Q Consensus 482 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 559 (708)
+.+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 376 (514)
T 2gw1_A 299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN 376 (514)
T ss_dssp TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence 3467889999999999999999999999999853 2356778888889999999999999999998741 22467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 560 CMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVA---KRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
.++..+.+.|++++|...++++ +.. ++ ...|..++..+.. .|++++|...++++++.+|+++.++..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 9999999999999999999887 222 22 3488899999999 9999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhcC
Q 038516 629 SNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 629 ~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+.+|...|++++|...++++.+.
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999998774
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.4e-23 Score=219.01 Aligned_cols=447 Identities=10% Similarity=-0.052 Sum_probs=312.8
Q ss_pred hhHHhHHHHHhHhCCChhHHHHHhccCCC--CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHh
Q 038516 150 TCVQTSLLGMYSNCGDFESAKRIFGLIGD--KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACS 227 (708)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 227 (708)
...+..+...+.+.|++++|+..|+.+.. |+..+|..+..++.+.|++++|++.++++.+.+ +.+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45677788899999999999999998764 788899999999999999999999999998853 224568899999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHHHHcCCCchHHHH
Q 038516 228 RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAGYMENGNGEKAVD 303 (708)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~ 303 (708)
..|++++|...|+.+.+.+. ++......++..+........+.+.+..+.. ++...+..-.......
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------- 155 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ-------- 155 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc--------
Confidence 99999999999999998863 4444555555544433333333332222221 1111111110000111
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHh---cCCChhHHHHHhhcC
Q 038516 304 MFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFK---NGDAESPQKVFMLIA 380 (708)
Q Consensus 304 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~ 380 (708)
...|+.......+..+......... .-+.+...+..+...+.. .|++++|...|+.+.
T Consensus 156 ---------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 156 ---------ENLPSVTSMASFFGIFKPELTFANY----------DESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSC----------CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred ---------cCCchhHHHHHHHhhcCHHHHHHHh----------cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 1233333322222211111111000 001223333333333332 556666666655543
Q ss_pred C----------------C-CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHH
Q 038516 381 E----------------K-DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHS 443 (708)
Q Consensus 381 ~----------------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 443 (708)
+ + +..++..+...+...|++++|...|+++.+... +...+..+...+...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 1 234566677778888888888888888877543 36677777888888888888888888
Q ss_pred HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 038516 444 QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE 520 (708)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 520 (708)
.+.+.. +.+...+..+...+...|++++|...|+.+. +.+...+..+...+...|++++|...++++.+.. +.+.
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 877654 4456778889999999999999999998874 4467889999999999999999999999999852 3356
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcC----hHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCCCCHHHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPG----HKHYSCMVSLLSR---AGLLDEAENLIAES-PYSEIRIELW 591 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~~~~~~~~ 591 (708)
..+..+...+...|++++|...++++.+. .-.++ ...+..++..+.. .|++++|...++++ ...+.+...+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 77888888999999999999999999874 11222 3478889999999 99999999999987 2233468889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516 592 RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS 629 (708)
Q Consensus 592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 629 (708)
..++..+...|++++|...++++++++|+++..+..+.
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999999999988777664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.7e-22 Score=208.20 Aligned_cols=335 Identities=12% Similarity=0.059 Sum_probs=234.6
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHH
Q 038516 282 LVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLN 361 (708)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 361 (708)
...+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|+++.|...++.+.+.+ +.+..++..+..
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 345556666666666666666666666654 33445555556666666666666666666665554 334455555555
Q ss_pred HHHhcCCChhHHHHHhhcCCCCE------eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccH
Q 038516 362 MYFKNGDAESPQKVFMLIAEKDI------VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAIL 435 (708)
Q Consensus 362 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 435 (708)
+|.+.|++++|...|+.+.+.++ ..+..++..+.. ..+......+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 55555555555555555443221 222222211100 0111122234456666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038516 436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVIL 512 (708)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 512 (708)
++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++. +.+..+|..++..|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666665543 4466777888889999999999999998875 4578899999999999999999999999999
Q ss_pred HCCCCCChHH-HHHH------------HHHHhccCcHHHHHHHHHHhhHCCCCcC-----hHHHHHHHHHHHhcCCHHHH
Q 038516 513 EHGLRPDEIT-FLSL------------LSACSHSGLVERGKILWNQMKEHSLIPG-----HKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 513 ~~g~~p~~~~-~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A 574 (708)
.. .|+... +..+ ...|.+.|++++|...|+++.+ ..|+ ...+..++.++.+.|++++|
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 74 565443 4333 6789999999999999999987 3454 45788899999999999999
Q ss_pred HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH------------HHhcC-----
Q 038516 575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL------------YAATG----- 636 (708)
Q Consensus 575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g----- 636 (708)
...++++ ...+.+...|..++.+|...|++++|...++++++++|+++.++..++.+ |...|
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 9999997 33435789999999999999999999999999999999999999999944 55555
Q ss_pred CchHHHHHHHH
Q 038516 637 RWDCVAKMRRK 647 (708)
Q Consensus 637 ~~~eA~~~~~~ 647 (708)
+.+++.+.+++
T Consensus 395 ~~~~~~~~y~~ 405 (450)
T 2y4t_A 395 KKQEIIKAYRK 405 (450)
T ss_dssp CTTHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55666777765
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=3.6e-21 Score=207.16 Aligned_cols=421 Identities=11% Similarity=0.006 Sum_probs=280.9
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhc
Q 038516 182 VAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMY 261 (708)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 261 (708)
..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|...++.+++.+ +.+...+..+..++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 456666777888888888888888887743 2356677777888888888888888888888765 34566777777778
Q ss_pred ccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHc-----CCCCCCHhHHHHHHHHHcCCCCccc
Q 038516 262 SKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRM-----SLLKPDEYTFAAIISATSALPASAY 336 (708)
Q Consensus 262 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~t~~~ll~~~~~~~~~~~ 336 (708)
...|++++|...|+.+.. +.......+..+...+....|...++.+... ....|+.....
T Consensus 104 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-------------- 168 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA-------------- 168 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH--------------
T ss_pred HHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH--------------
Confidence 888888888887764422 2222222334444455556677777766432 01122222222
Q ss_pred hHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEe---eehhhHHHHhc--------CCChHHHHH
Q 038516 337 GKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIV---LWTEMIIGHSR--------MGDGECAIK 405 (708)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~A~~ 405 (708)
.+....+.+.+...+......+.. ....+...+.. .|++++|..
T Consensus 169 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 169 -------------------------SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp -------------------------HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 222233333333332222222111 11122222211 246777888
Q ss_pred HHHHHhHCCCccCH--------HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHH
Q 038516 406 LFCKMCREGLKCDN--------FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIF 477 (708)
Q Consensus 406 ~~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 477 (708)
+++++.+.. |+. .++..+...+...|++++|...+..+.+.. |+...+..+...+...|++++|...|
T Consensus 224 ~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence 887777543 331 234555566677788888888888887764 34677778888888888888888888
Q ss_pred hhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc
Q 038516 478 SQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP 553 (708)
Q Consensus 478 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 553 (708)
+.+. +.+..+|..+...+...|++++|...++++.+. .| +...+..+...+...|++++|...++++.+.. +.
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 376 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PT 376 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 8774 346778888888888999999999999988885 34 45677778888888999999999998888732 22
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCC---CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 038516 554 GHKHYSCMVSLLSRAGLLDEAENLIAES----PYS---EIRIELWRTLLSTCVAK----------RNSRMVIQAAEQVLR 616 (708)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~---~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~ 616 (708)
+...+..++..+...|++++|...++++ +.. ......+..+...+... |++++|...++++++
T Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 3667888888899999999999888876 111 01222344455666666 899999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 617 LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 617 ~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.+|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888764
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.1e-20 Score=198.31 Aligned_cols=308 Identities=11% Similarity=0.020 Sum_probs=230.2
Q ss_pred CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC---CCEeeehhhH
Q 038516 315 KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE---KDIVLWTEMI 391 (708)
Q Consensus 315 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 391 (708)
+.+...+..+...+...|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+.+.+ .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 3445556666666667777777777777666553 44566666666666666777666666665543 2345566666
Q ss_pred HHHhcCCChHHHHHHHHHHhHCCCccCH----HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516 392 IGHSRMGDGECAIKLFCKMCREGLKCDN----FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN 467 (708)
Q Consensus 392 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (708)
..|.+.|++++|...|+++.+. .|+. ..+..+...+.. ..+..+...+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~ 156 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS 156 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence 6666666666666666666553 2332 222222222111 1122345568889
Q ss_pred CCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516 468 GDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 468 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
|++++|...|+.+. +.+...+..++.+|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus 157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999885 4578899999999999999999999999999852 3467889999999999999999999999
Q ss_pred HhhHCCCCcC-hHHHHHH------------HHHHHhcCCHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 038516 545 QMKEHSLIPG-HKHYSCM------------VSLLSRAGLLDEAENLIAESPYSEIR-----IELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 545 ~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~ 606 (708)
++.+ ..|+ ...+..+ +..+.+.|++++|...++++....|+ ...+..++..+...|++++
T Consensus 236 ~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 236 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 9987 4454 3344444 88999999999999999998222233 3468888889999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
|+..++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999874
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=8e-19 Score=188.77 Aligned_cols=445 Identities=10% Similarity=-0.047 Sum_probs=268.4
Q ss_pred cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHh
Q 038516 81 SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMY 160 (708)
Q Consensus 81 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 160 (708)
.|..+-..+.+.|+ ++.|+..|+++.+.. +.+..++..+...+...|+++.|.+.++.+++.. +.+...+..+..+|
T Consensus 27 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 27 QLKNRGNHFFTAKN-FNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHTTC-CC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 44555556666666 666666666666542 2344556666666666666666666666666654 23455556666666
Q ss_pred HhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHH
Q 038516 161 SNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHA 240 (708)
Q Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 240 (708)
...|++++|.+.|+.+.. +....+..+..+...+....|...++.+.... |+.
T Consensus 104 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~------------------------ 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR------------------------ 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc------------------------
Confidence 666666666666643321 11111112222333333445555555554321 000
Q ss_pred HHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChh---HHHHHHHHHHcC--------CCchHHHHHHHHHH
Q 038516 241 RVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLV---SWNSMIAGYMEN--------GNGEKAVDMFVALR 309 (708)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~ 309 (708)
.....|+. ..+..+....+.+.+...+......+.. ....+...+... |++++|..+|+++.
T Consensus 157 ---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 157 ---GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp -----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 00011221 2222233344555555555555443322 223333332222 35666666666665
Q ss_pred HcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehh
Q 038516 310 RMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTE 389 (708)
Q Consensus 310 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 389 (708)
+. .|+ +..++..+..++ ..
T Consensus 230 ~~---~p~----------------------------------~~~~~~~~~~~~------------------------~~ 248 (537)
T 3fp2_A 230 SA---NTV----------------------------------DDPLRENAALAL------------------------CY 248 (537)
T ss_dssp C-----CC----------------------------------CHHHHHHHHHHH------------------------HH
T ss_pred HH---CCC----------------------------------cchhhHHHHHHH------------------------HH
Confidence 43 122 111111111111 12
Q ss_pred hHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516 390 MIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD 469 (708)
Q Consensus 390 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 469 (708)
+...+...|++++|...|++..+. .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|+
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence 233445556666666666666554 3445566666666677777777777777666654 3456778888888899999
Q ss_pred HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 038516 470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQM 546 (708)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 546 (708)
+++|...|+++. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999998874 3457789999999999999999999999999862 334667888888999999999999999998
Q ss_pred hHCC-----CCcChHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516 547 KEHS-----LIPGHKHYSCMVSLLSRA----------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQA 610 (708)
Q Consensus 547 ~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 610 (708)
.+.. .......+..++..+.+. |++++|...++++ ...+.+...+..++..+...|++++|...
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 7641 111223345566778888 9999999999988 23335688899999999999999999999
Q ss_pred HHHHHhcCCCCcchHHH
Q 038516 611 AEQVLRLDPEDGTTHIL 627 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~ 627 (708)
+++++++.|++......
T Consensus 485 ~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 485 FEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHC--CHHHHHH
T ss_pred HHHHHHhCCCcHHHHHH
Confidence 99999999998775443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.1e-18 Score=176.99 Aligned_cols=328 Identities=11% Similarity=0.018 Sum_probs=244.5
Q ss_pred CHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC---CCEeeehhhHHH
Q 038516 317 DEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE---KDIVLWTEMIIG 393 (708)
Q Consensus 317 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 393 (708)
|...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...++.+.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 34566677777888888888888888888765 55677788888888888888888888877653 245667777778
Q ss_pred HhcCCChHHHHHHHHHHhHCCCcc---CHH-HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516 394 HSRMGDGECAIKLFCKMCREGLKC---DNF-ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD 469 (708)
Q Consensus 394 ~~~~~~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 469 (708)
+...|++++|...|++..+. .| +.. .+..+... .. ...+..+...+...|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccC
Confidence 88888888888888877764 33 221 11111110 00 1112234567778888
Q ss_pred HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 038516 470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQM 546 (708)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 546 (708)
+++|.+.|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888774 4567788888888889999999999999888852 335667778888888889999999999888
Q ss_pred hHCCCCcC-hHHHH------------HHHHHHHhcCCHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHhcCCHHHHH
Q 038516 547 KEHSLIPG-HKHYS------------CMVSLLSRAGLLDEAENLIAESPYSEI-RI----ELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 547 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~ 608 (708)
.+. .|+ ...+. .++..+.+.|++++|...++++....| +. ..+..+...+...|++++|.
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 863 333 22222 336779999999999999988722113 33 23556778889999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHH
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAEL 688 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 688 (708)
..++++++.+|+++.++..++.+|...|++++|.+.++++.+. .|...++...+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l 346 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHH
Confidence 9999999999999999999999999999999999999998864 56667777778
Q ss_pred HHHHHHHHhhh
Q 038516 689 HRLRGNMRKLV 699 (708)
Q Consensus 689 ~~l~~~~~~~~ 699 (708)
.++...+++..
T Consensus 347 ~~~~~~~~~~~ 357 (359)
T 3ieg_A 347 EKAQRLLKQSQ 357 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 87777777654
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=4.3e-16 Score=171.52 Aligned_cols=552 Identities=13% Similarity=0.109 Sum_probs=317.8
Q ss_pred CcchhhHHHHHHhccCChHHHHHHhhcCCC-------CCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHH
Q 038516 47 SPYMYNNVLSMYGRCGSIRDARQVFDEIPK-------RSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFT 119 (708)
Q Consensus 47 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 119 (708)
+.+-+..+...|-++|-++.|++.+..+.. .....-..++..+.+ -. .+.++++++.|...+++.|-....
T Consensus 606 thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~-~~~s~~~l~~~l~~n~~qnlq~vv 683 (1630)
T 1xi4_A 606 THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LS-VEDSLECLRAMLSANIRQNLQICV 683 (1630)
T ss_pred ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CC-HHHHHHHHHHHHHHhHhhhhhhhh
Confidence 445677888899999999999999987641 122233345544544 55 899999999999876665544333
Q ss_pred HHHHHhccccchHHHHHHHHHHHHh-----------CCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC----------
Q 038516 120 SLAQAVSLLEDQLMGSLLHAQVIKY-----------GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD---------- 178 (708)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 178 (708)
.+..-|...=..+...++|+..... .+.-|+.+....|.++++.|++.+.+++.++-.-
T Consensus 684 qva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~fl 763 (1630)
T 1xi4_A 684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 763 (1630)
T ss_pred hHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHH
Confidence 3333333222233333333333221 2356888889999999999999988887654210
Q ss_pred -----CCc----------------c------cHHHHHHHHhcC-------------------------------------
Q 038516 179 -----KDA----------------V------AWNSIILGNFKN------------------------------------- 194 (708)
Q Consensus 179 -----~~~----------------~------~~~~li~~~~~~------------------------------------- 194 (708)
+|. . .....|.+|++.
T Consensus 764 k~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~ 843 (1630)
T 1xi4_A 764 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTD 843 (1630)
T ss_pred hhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHH
Confidence 110 0 000112222211
Q ss_pred ---------CChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCC-hh-------------------------------
Q 038516 195 ---------DKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGN-FV------------------------------- 233 (708)
Q Consensus 195 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~------------------------------- 233 (708)
++..--+..++.....| ..+..+++.|...|...++ .+
T Consensus 844 ~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~ 922 (1630)
T 1xi4_A 844 ELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYE 922 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhc
Confidence 11111222233333444 3355667776665543221 10
Q ss_pred --------------------HHH--------HHH---------------HHHHHhC--CCCChhhHHHHHHhcccCCChH
Q 038516 234 --------------------CGK--------VIH---------------ARVIISN--TQVDLPLENALLDMYSKCSDTQ 268 (708)
Q Consensus 234 --------------------~a~--------~~~---------------~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (708)
.|+ ++| ++..... -..++.-....+.+|...|...
T Consensus 923 ~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~ 1002 (1630)
T 1xi4_A 923 RGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002 (1630)
T ss_pred ccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHH
Confidence 011 111 1111111 1123333455677888999999
Q ss_pred HHHHHHhccCC-CC-----hhHHHHHHHH---------------------------HHcCCCchHHHHHHHHHHHcCCCC
Q 038516 269 TAFSVFTRIEN-PD-----LVSWNSMIAG---------------------------YMENGNGEKAVDMFVALRRMSLLK 315 (708)
Q Consensus 269 ~a~~~~~~~~~-~~-----~~~~~~li~~---------------------------~~~~g~~~~A~~~~~~m~~~~~~~ 315 (708)
+|.++++++.- ++ ...-+.++.+ +...|.+++|..+|++...
T Consensus 1003 EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~----- 1077 (1630)
T 1xi4_A 1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV----- 1077 (1630)
T ss_pred HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----
Confidence 99999998863 22 1233334433 3444455555555544310
Q ss_pred CCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHh
Q 038516 316 PDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHS 395 (708)
Q Consensus 316 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 395 (708)
.......++. ..+++++|.++.+.. .+..+|..+..++.+.|++++|.+.|... .|...|..++..+.
T Consensus 1078 -~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A 1078 -NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAAN 1145 (1630)
T ss_pred -HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence 0111111111 334444444444422 23556666666666666666666666443 45555566666666
Q ss_pred cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHH
Q 038516 396 RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAES 475 (708)
Q Consensus 396 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 475 (708)
+.|++++|.+.|...++.. ++....+.+..+|++.++++....+.. .++...+..+...|...|++++|..
T Consensus 1146 ~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1146 TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 6666666666666555433 222222235556666666654333321 2334445556666667777777777
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh
Q 038516 476 IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH 555 (708)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 555 (708)
+|... ..|..+..+|.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +..++
T Consensus 1217 ~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~ 1280 (1630)
T 1xi4_A 1217 LYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 1280 (1630)
T ss_pred HHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCH
Confidence 77653 46677777777777777777777665 2446666666677777776666665443 23455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC-----CCcchHHH
Q 038516 556 KHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVA--KRNSRMVIQAAEQVLRLDP-----EDGTTHIL 627 (708)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~ 627 (708)
..+..++..|.+.|.+++|..+++... ..+.....|..+...+.+ -++..++.+.|..-..+.| +++..|..
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence 667788888999999999999997773 232345567666666665 4577778888887777777 67778899
Q ss_pred HHHHHHhcCCchHHHH
Q 038516 628 LSNLYAATGRWDCVAK 643 (708)
Q Consensus 628 l~~~~~~~g~~~eA~~ 643 (708)
++-+|.+.|+|+.|..
T Consensus 1361 lv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhcccHHHHHH
Confidence 9999999999999884
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=3.5e-18 Score=173.14 Aligned_cols=323 Identities=11% Similarity=0.030 Sum_probs=232.3
Q ss_pred hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHH
Q 038516 282 LVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLN 361 (708)
Q Consensus 282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 361 (708)
+..+..+...+...|++++|+..|+++.+. .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 445666666777777777777777777664 34456666667777777777777777777777664 445667777778
Q ss_pred HHHhcCCChhHHHHHhhcCCCCE---e---eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccH
Q 038516 362 MYFKNGDAESPQKVFMLIAEKDI---V---LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAIL 435 (708)
Q Consensus 362 ~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 435 (708)
++...|++++|...|+.+.+.++ . .+..+... .. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence 88888888888888877655332 1 11111100 00 01122233344555666
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038516 436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVIL 512 (708)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 512 (708)
++|..++..+.+.. +.+...+..+...+...|++++|...++.+. +.+...|..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666655543 3456677788888889999999999988774 3567888999999999999999999999999
Q ss_pred HCCCCCCh-HHHH------------HHHHHHhccCcHHHHHHHHHHhhHCCCCcCh-----HHHHHHHHHHHhcCCHHHH
Q 038516 513 EHGLRPDE-ITFL------------SLLSACSHSGLVERGKILWNQMKEHSLIPGH-----KHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 513 ~~g~~p~~-~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A 574 (708)
+. .|+. ..+. .+...+...|++++|...++++.+. .|+. ..+..++..+...|++++|
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 85 4543 3332 2255688999999999999999874 3332 3355688999999999999
Q ss_pred HHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 575 ENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 575 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
...++++. ..+.++..|..++..+...|++++|...++++++++|+++.++..+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999882 23347889999999999999999999999999999999999888888776553
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=3.4e-15 Score=164.56 Aligned_cols=558 Identities=13% Similarity=0.093 Sum_probs=349.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCC-hHHHHHH---hhc------CCCCCcc--
Q 038516 13 ATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGS-IRDARQV---FDE------IPKRSLV-- 80 (708)
Q Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~---~~~------~~~~~~~-- 80 (708)
..|+..+-+..++..-..+++.-+..|.. ++.++|+|...|...++ ++.-+.- ++. ..++|+.
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g~~-----~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la 917 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEGCE-----EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLA 917 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchH
Confidence 45566666666677777778888888876 88999999999997664 3332211 000 0112211
Q ss_pred --------cHHHHHHHHHhCCCChHH-HHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCC--CCc
Q 038516 81 --------SYNALIAAYSRDHDHAHL-TFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGS--SED 149 (708)
Q Consensus 81 --------~~~~ll~~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~ 149 (708)
.-.-||+..-+++- ++. |.-+++ +-|...|..+|. .+-+.-+++.++.....+ ..+
T Consensus 918 ~iay~~g~~d~eli~vt~~n~l-~k~~arylv~-------r~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~ 984 (1630)
T 1xi4_A 918 CVAYERGQCDLELINVCNENSL-FKSLSRYLVR-------RKDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQD 984 (1630)
T ss_pred HHHhcccCCcHHHHHHHhcchh-HHHHHHHHHH-------hcCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccC
Confidence 11223333333333 221 211111 124445554442 112233445555555443 244
Q ss_pred hhHHhHHHHHhHhCCChhHHHHHhccCCC-C-----CcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 038516 150 TCVQTSLLGMYSNCGDFESAKRIFGLIGD-K-----DAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLL 223 (708)
Q Consensus 150 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 223 (708)
+.--+..+..|...|...+|+++++...- + +...-+.++.+..+. +..+..+..++... .....+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA 1056 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIA 1056 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHH
Confidence 55557778888888888888888887653 2 224556666666665 44555555555431 1133466
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHH
Q 038516 224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVD 303 (708)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 303 (708)
..+...|.+++|..+|++.. ......+.++. ..|++++|.++.++.. +..+|..+..++...|++++|++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence 67778888888888888752 11222233322 6678888888888774 35677888888888888888888
Q ss_pred HHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCC
Q 038516 304 MFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD 383 (708)
Q Consensus 304 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 383 (708)
.|.+. -|...|..++.+|.+.|+++++.+.+...++.. ++..+.+.++.+|++.+++++...+. ..++
T Consensus 1127 sYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A 1127 SYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred HHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCC
Confidence 88543 466777888888888888888888888777654 33333445888888888887644443 3344
Q ss_pred EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHh
Q 038516 384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDM 463 (708)
Q Consensus 384 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (708)
...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++.. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 455667888888888888888888774 37788888888888888888888765 455777778888
Q ss_pred hHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHh--ccCcHHHHH
Q 038516 464 YAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACS--HSGLVERGK 540 (708)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~--~~~~~~~a~ 540 (708)
|...|++..|...... ...+...+..++..|.+.|.+++|+.+++..+.. .|.. ..|.-+...++ +-++..++.
T Consensus 1260 cve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888888887765 3445566678888888888888888888877753 4432 33433444333 444555555
Q ss_pred HHHHHhhHCCCCc------ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------------CCCCCCHHHHHHHHHHHHhc
Q 038516 541 ILWNQMKEHSLIP------GHKHYSCMVSLLSRAGLLDEAENLIAES-------------PYSEIRIELWRTLLSTCVAK 601 (708)
Q Consensus 541 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~ 601 (708)
++|..-. .++| +...|.-++..|.+.|+++.|...+-+- -.+..+++++...+..|...
T Consensus 1337 k~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1337 ELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 5555332 2333 3566888888888888888888443222 11334666666666666554
Q ss_pred C---------------CHHHHHHHHHHH------------HhcCCCCcchHHHHHHHHHhcCCch
Q 038516 602 R---------------NSRMVIQAAEQV------------LRLDPEDGTTHILLSNLYAATGRWD 639 (708)
Q Consensus 602 ~---------------~~~~a~~~~~~~------------~~~~p~~~~~~~~l~~~~~~~g~~~ 639 (708)
. |.+++++++.+. ++ +-++...-..|.++|....+++
T Consensus 1415 ~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq-~~n~~~Vneal~el~ieeed~~ 1478 (1630)
T 1xi4_A 1415 KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ-NHNNKSVNESLNNLFITEEDYQ 1478 (1630)
T ss_pred ChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHH-HhcchhhhHHHHHHhcCccchH
Confidence 4 566665555521 11 2334444556666666655544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=8e-18 Score=168.35 Aligned_cols=285 Identities=10% Similarity=-0.036 Sum_probs=188.6
Q ss_pred CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516 350 DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL 426 (708)
Q Consensus 350 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll 426 (708)
+.+..++..+...+...|++++|..+|+.+.+. +...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 444555556666666667777776666665432 33344445566666777777777777766542 22344555555
Q ss_pred HHHhCcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH
Q 038516 427 SACADLA-ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE 502 (708)
Q Consensus 427 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 502 (708)
..+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 6666666 6777777766665543 3345566677777777777777777777664 334566666777777788888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCC--------CCcChHHHHHHHHHHHhcCCHHHH
Q 038516 503 EAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS--------LIPGHKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 503 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A 574 (708)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .......+..++..|...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888877742 2245666777777777888888888777776531 122356777777888888888888
Q ss_pred HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCC
Q 038516 575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA-ATGR 637 (708)
Q Consensus 575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~ 637 (708)
...++++ ...+.+...|..++..+...|++++|...++++++++|+++..+..++.++. ..|+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 8877776 2222356677777777777888888888888888888888877778877773 4444
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.2e-17 Score=165.13 Aligned_cols=265 Identities=11% Similarity=0.032 Sum_probs=225.5
Q ss_pred CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038516 383 DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVD 462 (708)
Q Consensus 383 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (708)
+...+..++..+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 55566778888899999999999999998764 2233455566777889999999999999998865 456778889999
Q ss_pred hhHhcC-CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 038516 463 MYAKNG-DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVER 538 (708)
Q Consensus 463 ~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 538 (708)
.+...| ++++|...|++.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 9999999999875 3467889999999999999999999999999863 2345667778889999999999
Q ss_pred HHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 539 GKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY----------SEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 539 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
|.+.++++.+.. +.+...+..++..+...|++++|...++++.. .+.....+..++..+...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999998732 23467888999999999999999999988711 0234678999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..+++++++.|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999977653
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=3.7e-16 Score=165.32 Aligned_cols=352 Identities=13% Similarity=0.004 Sum_probs=232.4
Q ss_pred CCChHHHHHHHhccCC-CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC----CCCc
Q 038516 264 CSDTQTAFSVFTRIEN-PDLVSWNSMIAGYME----NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA----LPAS 334 (708)
Q Consensus 264 ~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~ 334 (708)
.++.++|...|++..+ .+...+..|...|.. .+++++|..+|++..+. + +...+..+-..+.. .++.
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCH
Confidence 3444444444443322 233344444444444 44555555555554443 1 22333333333333 4455
Q ss_pred cchHHHHHHHHHHCCCCchhHHhHHHHHHHh----cCCChhHHHHHhhcCCC-CEeeehhhHHHHhc----CCChHHHHH
Q 038516 335 AYGKPLHALVIKTGYDSSVFVGTTLLNMYFK----NGDAESPQKVFMLIAEK-DIVLWTEMIIGHSR----MGDGECAIK 405 (708)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~ 405 (708)
+.|...++.....| +...+..|...|.. .+++++|.+.|+...+. +...+..+...|.. .+++++|..
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 55555555544443 33444445555554 45556666655554332 34445555555555 677777888
Q ss_pred HHHHHhHCCCccCHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh----cCCHHHHHHHH
Q 038516 406 LFCKMCREGLKCDNFALSGALSACAD----LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK----NGDLRAAESIF 477 (708)
Q Consensus 406 ~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 477 (708)
.|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+..+|.. .++.++|...|
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 877777654 33444445555543 677888888888776654 34455566666766 88999999999
Q ss_pred hhCCC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhhH
Q 038516 478 SQVLH-PDLKCWNALLGGYSHY-----GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG---LVERGKILWNQMKE 548 (708)
Q Consensus 478 ~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~ 548 (708)
+...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| ++++|.++|++..+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88753 5677888888888887 89999999999999865 4556666666666656 88999999999988
Q ss_pred CCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 038516 549 HSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 549 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 620 (708)
.| +...+..|...|.. .+++++|.+.++++... .++..+..+...|.. .+|.++|...++++++.+|+
T Consensus 360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 53 56778889999988 89999999999998544 468888889998888 89999999999999999954
Q ss_pred ---CcchHHHHHHHHHhc
Q 038516 621 ---DGTTHILLSNLYAAT 635 (708)
Q Consensus 621 ---~~~~~~~l~~~~~~~ 635 (708)
++.+...|+.++...
T Consensus 436 ~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHHHTTSCHHH
T ss_pred CcCCHHHHHHHHhcCHhH
Confidence 777777777766543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=1.3e-15 Score=162.81 Aligned_cols=412 Identities=8% Similarity=0.002 Sum_probs=264.8
Q ss_pred CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHHH-
Q 038516 215 TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIAG- 291 (708)
Q Consensus 215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~- 291 (708)
+...|..++.. .+.|+++.|..+++.+++.. +.+...|..++..+.+.|+.++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 44566666663 56777777777777777652 44566777777777777777777777777765 666666655542
Q ss_pred HHcCCCchHHHH----HHHHHHHcCCCCC-CHhHHHHHHHHHcC---------CCCccchHHHHHHHHHHCCCCchhHHh
Q 038516 292 YMENGNGEKAVD----MFVALRRMSLLKP-DEYTFAAIISATSA---------LPASAYGKPLHALVIKTGYDSSVFVGT 357 (708)
Q Consensus 292 ~~~~g~~~~A~~----~~~~m~~~~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (708)
....|+.+.|.+ +|+.....-|..| +...|...+..... .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 234566666554 5555544323333 33444444443322 355556666666655511011112222
Q ss_pred HHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHH------hHCC---CccCH--------H
Q 038516 358 TLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKM------CREG---LKCDN--------F 420 (708)
Q Consensus 358 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m------~~~g---~~p~~--------~ 420 (708)
.........|. ..+..++. .+.+++..|..+++++ .+.. ++|+. .
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 22111100110 00111110 1234566666666552 2221 23331 2
Q ss_pred HHHHHHHHHhC----ccc----HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh-------cCCHH-------HHHHHHh
Q 038516 421 ALSGALSACAD----LAI----LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK-------NGDLR-------AAESIFS 478 (708)
Q Consensus 421 t~~~ll~~~~~----~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~ 478 (708)
.|...+..... .++ .+.+..+++...... +.++..+..++..+.+ .|+++ +|..+|+
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 33333322211 122 236667787777653 4567788888887775 68876 8999999
Q ss_pred hCCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516 479 QVLH---P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGLVERGKILWNQMKEHSLI 552 (708)
Q Consensus 479 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 552 (708)
+... | +...|..++..+.+.|++++|..+|+++++. .|+. ..|..++..+.+.|++++|.++|++..+. .
T Consensus 311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~ 386 (530)
T 2ooe_A 311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--A 386 (530)
T ss_dssp HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--T
T ss_pred HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--c
Confidence 8753 4 5788999999999999999999999999994 6653 46888888888899999999999999874 3
Q ss_pred cC-hHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hH
Q 038516 553 PG-HKHYSCMVSL-LSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT----TH 625 (708)
Q Consensus 553 p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~ 625 (708)
|. ...|...+.. +...|+.++|..+|+++ ...|.++.+|..++..+...|+.++|..++++++...|.++. .|
T Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw 466 (530)
T 2ooe_A 387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466 (530)
T ss_dssp TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence 32 3333333322 34689999999999987 222246889999999999999999999999999999877665 78
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 626 ILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 626 ~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
...+......|+.+.+..+.+++.+.
T Consensus 467 ~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 467 ARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888888899999999999988764
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=3.7e-17 Score=166.36 Aligned_cols=279 Identities=13% Similarity=0.005 Sum_probs=221.9
Q ss_pred HHhcCCChhHHH-HHhhcCCC-------CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516 363 YFKNGDAESPQK-VFMLIAEK-------DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI 434 (708)
Q Consensus 363 ~~~~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 434 (708)
+.-.|++++|.. .++..... +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334577888887 77755431 34567788889999999999999999998764 3456678888888899999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC-ChHHHHH---------------HHHHHH
Q 038516 435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP-DLKCWNA---------------LLGGYS 496 (708)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~---------------li~~~~ 496 (708)
+++|...+..+.+.. +.+...+..+...|...|++++|...|+++. .| +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999988875 4577888899999999999999999998874 22 2222221 133344
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHH
Q 038516 497 HYGMAEEAFMVFEVILEHGLRPD---EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLD 572 (708)
Q Consensus 497 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 572 (708)
..|++++|...|+++.+. .|+ ..++..+...+...|++++|...++++.+. .| +...+..++..+...|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999985 454 677888899999999999999999999873 34 4678999999999999999
Q ss_pred HHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCCchH
Q 038516 573 EAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED-----------GTTHILLSNLYAATGRWDC 640 (708)
Q Consensus 573 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~e 640 (708)
+|...++++ ...+.+...+..++..+...|++++|...+++++++.|++ ..+|..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999997 3333568899999999999999999999999999999988 7889999999999999999
Q ss_pred HHHHHHH
Q 038516 641 VAKMRRK 647 (708)
Q Consensus 641 A~~~~~~ 647 (708)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988763
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=9.6e-17 Score=156.14 Aligned_cols=251 Identities=12% Similarity=-0.027 Sum_probs=135.1
Q ss_pred HHHHhcCCChhHHHHHhhcCCCCE----eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHH
Q 038516 361 NMYFKNGDAESPQKVFMLIAEKDI----VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILK 436 (708)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 436 (708)
+-....|+++.|...++.....++ .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 344556667777766665544322 2233455666666666666654433 12344445555555555555566
Q ss_pred HHHHHHHHHHHhCC-CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038516 437 QGEMIHSQAEKTGH-GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHG 515 (708)
Q Consensus 437 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 515 (708)
+|.+.++.+...+. +.+...+..+..++...|++++|++.+++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 66665555555443 22344444445555555555555555555 344455555555555555555555555555553
Q ss_pred CCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHH
Q 038516 516 LRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTL 594 (708)
Q Consensus 516 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l 594 (708)
.|+.... .+. ..++..+...|++++|..+++++ ...|.++..|..+
T Consensus 160 -~p~~~~~-~l~-------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l 206 (291)
T 3mkr_A 160 -DEDATLT-QLA-------------------------------TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206 (291)
T ss_dssp -CTTCHHH-HHH-------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred -CcCcHHH-HHH-------------------------------HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3332111 110 11222233345555555555555 1122455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH-HHHHHHHHhcC
Q 038516 595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC-VAKMRRKMKGS 651 (708)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~~~~~ 651 (708)
+.++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6666666666666666777777777777667777767777776655 34666666554
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=4.4e-15 Score=157.02 Aligned_cols=352 Identities=12% Similarity=-0.010 Sum_probs=292.4
Q ss_pred CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC----CCCccchHHHHHHHHHHCCCC
Q 038516 280 PDLVSWNSMIAGYME----NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA----LPASAYGKPLHALVIKTGYDS 351 (708)
Q Consensus 280 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 351 (708)
.+...+..+...|.. .+++++|+..|++..+. -+...+..+-..+.. .++.+.|...++...+.|
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 466777777788877 89999999999999876 345667777777777 899999999999998876
Q ss_pred chhHHhHHHHHHHh----cCCChhHHHHHhhcCCC-CEeeehhhHHHHhc----CCChHHHHHHHHHHhHCCCccCHHHH
Q 038516 352 SVFVGTTLLNMYFK----NGDAESPQKVFMLIAEK-DIVLWTEMIIGHSR----MGDGECAIKLFCKMCREGLKCDNFAL 422 (708)
Q Consensus 352 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~ 422 (708)
+...+..|...|.. .+++++|...|+...+. +...+..+...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677788888888 78999999999987654 55677778888877 789999999999998875 45566
Q ss_pred HHHHHHHhC----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh----cCCHHHHHHHHhhCC-CCChHHHHHHHH
Q 038516 423 SGALSACAD----LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK----NGDLRAAESIFSQVL-HPDLKCWNALLG 493 (708)
Q Consensus 423 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~ 493 (708)
..+-..+.. .++.++|..++....+.+ ++..+..+..+|.. .+++++|...|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665 799999999999988865 45667778888876 889999999999875 456778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-----CcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516 494 GYSH----YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS-----GLVERGKILWNQMKEHSLIPGHKHYSCMVSL 564 (708)
Q Consensus 494 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (708)
.|.. .+++++|+.+|++..+.| +...+..+...+... +++++|..+|++..+.| +...+..|...
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 8888 899999999999998864 455666677777766 89999999999999864 34567778888
Q ss_pred HHhcC---CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 038516 565 LSRAG---LLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA--- 634 (708)
Q Consensus 565 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 634 (708)
|...| ++++|.+.++++... .++..+..+...|.. .+|.++|...++++.+.. ++.++..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 88767 889999999998544 678899999999988 899999999999999864 57889999999999
Q ss_pred -cCCchHHHHHHHHHhcCCC
Q 038516 635 -TGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 635 -~g~~~eA~~~~~~~~~~~~ 653 (708)
.+++++|...+++..+.+.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988663
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.3e-16 Score=157.85 Aligned_cols=236 Identities=13% Similarity=0.124 Sum_probs=58.4
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHH
Q 038516 228 RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVA 307 (708)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 307 (708)
+.|++++|.+.++++ +++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344455555555544 12235555555555555555555555432 3444555555555555555555554444
Q ss_pred HHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeee
Q 038516 308 LRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLW 387 (708)
Q Consensus 308 m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 387 (708)
.++. .+++.+.+.++.++.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|
T Consensus 87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 3332 2334445555555555555555544442 244445555555555555555555555544 245
Q ss_pred hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516 388 TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN 467 (708)
Q Consensus 388 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (708)
..++.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHC
Confidence 55555555555555555555544 1344555555555555555555222211 112222233444455555
Q ss_pred CCHHHHHHHHhhCC---CCChHHHHHHHHHHHh
Q 038516 468 GDLRAAESIFSQVL---HPDLKCWNALLGGYSH 497 (708)
Q Consensus 468 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 497 (708)
|++++|..+++..+ +.....|+.|.-+|++
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 55555555554443 1233444444444443
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=5.3e-16 Score=150.87 Aligned_cols=269 Identities=10% Similarity=-0.021 Sum_probs=186.3
Q ss_pred HHHcCCCCccchHHHHHHHHHHCCCCch--hHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHH
Q 038516 326 SATSALPASAYGKPLHALVIKTGYDSSV--FVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECA 403 (708)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 403 (708)
+-....|++..|....+.... ..|+. .....+.++|...|+++.|...++....++..++..+...+...++.++|
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHH
Confidence 334557888888877765432 23332 35566789999999999999988775444566778888999999999999
Q ss_pred HHHHHHHhHCCCccCHHH-HHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-
Q 038516 404 IKLFCKMCREGLKCDNFA-LSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL- 481 (708)
Q Consensus 404 ~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 481 (708)
++.++++...+..|+... +..+...+...|++++|...++. +.+...+..++.+|.+.|++++|.+.|+++.
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999998876676554 44555778899999999999987 5678889999999999999999999999985
Q ss_pred -CCChHHHHHHH----HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChH
Q 038516 482 -HPDLKCWNALL----GGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHK 556 (708)
Q Consensus 482 -~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 556 (708)
.|+.. ...+. ..+...|++++|..+|+++.+. .+.+..
T Consensus 159 ~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------------------------------------~p~~~~ 201 (291)
T 3mkr_A 159 QDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK------------------------------------CSPTLL 201 (291)
T ss_dssp HCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------------------------------------SCCCHH
T ss_pred hCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------------------------------------CCCcHH
Confidence 35432 11222 2222234455555555555443 122344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM-VIQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
.++.++.++.+.|++++|+..++++ ...|.++..|..++..+...|+.++ +.++++++++++|+++.+.. ...+
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~ 277 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHH
Confidence 5555566666666666666666654 2232467777777777777777754 56788888899998876443 4445
Q ss_pred cCCchHHHH
Q 038516 635 TGRWDCVAK 643 (708)
Q Consensus 635 ~g~~~eA~~ 643 (708)
.+.++++..
T Consensus 278 ~~~fd~~~~ 286 (291)
T 3mkr_A 278 ENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=2.5e-15 Score=148.77 Aligned_cols=353 Identities=10% Similarity=0.062 Sum_probs=146.5
Q ss_pred hccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHH
Q 038516 59 GRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLH 138 (708)
Q Consensus 59 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 138 (708)
-+.|++++|.+.+++++.|+ +|..+..++.+.|+ +++|++.|.+ .+|..+|..++.++...|++++|..++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~-~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGM-VKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCC-HHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37788999999999997654 89999999999999 9999999965 367789999999999999999999988
Q ss_pred HHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcch
Q 038516 139 AQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFS 218 (708)
Q Consensus 139 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 218 (708)
+..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n 150 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN 150 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence 888774 45678889999999999999998888864 77779999999999999999999999977 46
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCc
Q 038516 219 YSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNG 298 (708)
Q Consensus 219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 298 (708)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999888877 377888999999999999999977777655 3444455688888899999
Q ss_pred hHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCC--CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHH
Q 038516 299 EKAVDMFVALRRMSLLKPDEYTFAAIISATSALP--ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVF 376 (708)
Q Consensus 299 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 376 (708)
++|+.+++...... +--...|+.+..++++-+ ++.+..+.|. -..+. ..+++++.
T Consensus 224 eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~------~~ini---~k~~~~~~------------ 280 (449)
T 1b89_A 224 EELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW------SRVNI---PKVLRAAE------------ 280 (449)
T ss_dssp HHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS------TTSCH---HHHHHHHH------------
T ss_pred HHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HHhcC---cHHHHHHH------------
Confidence 99998888877441 233334444433333321 1111111111 00000 01111111
Q ss_pred hhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHC-CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516 377 MLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCRE-GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS 455 (708)
Q Consensus 377 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 455 (708)
+...|..++..|...++++.|.... .+. ...-+...|..++.--....-+-+|..++- +. .+.
T Consensus 281 ------~~~~w~e~~~ly~~~~e~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~----~p~ 344 (449)
T 1b89_A 281 ------QAHLWAELVFLYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF----KPL 344 (449)
T ss_dssp ------TTTCHHHHHHHHHHTTCHHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH----CGG
T ss_pred ------HHHHHHHHHHHHHhhchHHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc----CHH
Confidence 3456777888888888888887643 332 222334444444433222222223333222 11 223
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhC
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQV 480 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~ 480 (708)
..+-|+.++...=+...+.++|+..
T Consensus 345 ~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 345 LLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHc
Confidence 3555666665555566666666544
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=8.6e-17 Score=163.63 Aligned_cols=290 Identities=13% Similarity=0.023 Sum_probs=220.7
Q ss_pred HhcCCChHHHHH-HHHHHhHCCC-cc--CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516 394 HSRMGDGECAIK-LFCKMCREGL-KC--DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD 469 (708)
Q Consensus 394 ~~~~~~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 469 (708)
+...|++++|+. .+++...... .| +...+..+...+...|++++|...+..+.+.. +.+...+..+..++.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445688899998 8876654321 11 23456677888899999999999999998765 5577888999999999999
Q ss_pred HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHH---------------HHHHH
Q 038516 470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FLS---------------LLSAC 530 (708)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~---------------ll~~~ 530 (708)
+++|...|+++. +.+..+|..+...|...|++++|...++++.+. .|+... +.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999999874 457889999999999999999999999999985 454322 221 24444
Q ss_pred hccCcHHHHHHHHHHhhHCC-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 531 SHSGLVERGKILWNQMKEHS-LIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 531 ~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
...|++++|...++++.+.. ..++..++..++..|.+.|++++|...++++ ...+.+...|..++..+...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 48999999999999998842 1124788999999999999999999999987 233346889999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHH
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAEL 688 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 688 (708)
..++++++++|+++.++..++.+|...|++++|...++++.+..... ..+. ...+|....++..+
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~-------------~~~~~~~~~~~~~l 336 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS--RGPR-------------GEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------------CCCCCHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCcc-------------ccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999887643211 0000 01256667777777
Q ss_pred HHHHHHHHhhhhh
Q 038516 689 HRLRGNMRKLVTD 701 (708)
Q Consensus 689 ~~l~~~~~~~~~~ 701 (708)
...-..+++...+
T Consensus 337 ~~~~~~~g~~~~A 349 (368)
T 1fch_A 337 RLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHTCGGGH
T ss_pred HHHHHHhCChHhH
Confidence 7777777666443
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.8e-15 Score=158.15 Aligned_cols=326 Identities=11% Similarity=-0.065 Sum_probs=170.2
Q ss_pred hHHHHHHHHHHc--CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHH---HcCCCCccchHHHHHHHHHHCCCCchhHHh
Q 038516 283 VSWNSMIAGYME--NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISA---TSALPASAYGKPLHALVIKTGYDSSVFVGT 357 (708)
Q Consensus 283 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 357 (708)
.++..+..++.. .+++++|+..|++..+. -+-+...+..+..+ +...++.+.|...++..++.. +.+..++.
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~ 213 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence 344444444433 34677888888877764 12223333322222 334566666666666666554 33344444
Q ss_pred HHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHH
Q 038516 358 TLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQ 437 (708)
Q Consensus 358 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 437 (708)
.+...+...+ ...+++++|.+.+++..... +.+...+..+...+...|++++
T Consensus 214 ~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~ 265 (472)
T 4g1t_A 214 LLALKLHKMR---------------------------EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK 265 (472)
T ss_dssp HHHHHHHHCC---------------------------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH---------------------------hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence 4433333221 22344555666665554432 2233445555555566666666
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038516 438 GEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR 517 (708)
Q Consensus 438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 517 (708)
|...+....+.. +.+..++..+..+|...+....+.. .. .........+.++.|...+++..+.. +
T Consensus 266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~------~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 331 (472)
T 4g1t_A 266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR------EN------GMYGKRKLLELIGHAVAHLKKADEAN-D 331 (472)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHH------HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence 666666655543 3344555555555533221111100 00 00011112234678888888888752 2
Q ss_pred CChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh--HHHHHHHH-HHHhcCCHHHHHHHHHhCCCCCCCHHHHHHH
Q 038516 518 PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH--KHYSCMVS-LLSRAGLLDEAENLIAESPYSEIRIELWRTL 594 (708)
Q Consensus 518 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 594 (708)
.+...+..+...+...|++++|.+.|++..+....|.. ..+..+.. .+...|++++|+..++++....|+...+.
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~-- 409 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-- 409 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH--
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH--
Confidence 24566778888999999999999999999875433322 12333333 24578899999999988732224433222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEE
Q 038516 595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI 662 (708)
Q Consensus 595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 662 (708)
+....+..+++++++.+|+++.+|..||.+|...|++++|++.+++..+.+.......+|+
T Consensus 410 -------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 410 -------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp -------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred -------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 2234566778899999999999999999999999999999999999988765544444443
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=6.3e-17 Score=164.44 Aligned_cols=259 Identities=12% Similarity=-0.009 Sum_probs=208.2
Q ss_pred CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038516 383 DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVD 462 (708)
Q Consensus 383 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (708)
+...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457778888888999999999999888753 3456778888888889999999999999888765 456778889999
Q ss_pred hhHhcCCHHHHHHHHhhCCC--CC-----------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHH
Q 038516 463 MYAKNGDLRAAESIFSQVLH--PD-----------LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP---DEITFLSL 526 (708)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l 526 (708)
+|...|++++|...|+++.. |+ ...+..+...+...|++++|...++++.+. .| +...+..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence 99999999999999988742 21 223345578899999999999999999986 44 46788888
Q ss_pred HHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCH
Q 038516 527 LSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNS 604 (708)
Q Consensus 527 l~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 604 (708)
...+...|++++|.+.|+++.+. .| +...+..++.+|...|++++|...++++ ...+.+...|..++..|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 89999999999999999999873 34 4778999999999999999999999987 23334688899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 605 RMVIQAAEQVLRLDPE------------DGTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 605 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
++|...+++++++.|+ +..+|..|+.++...|+.+.|..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999887 367799999999999999999887664
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=3.4e-16 Score=156.19 Aligned_cols=258 Identities=11% Similarity=0.002 Sum_probs=197.5
Q ss_pred eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhH
Q 038516 386 LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYA 465 (708)
Q Consensus 386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 465 (708)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445566666777777777777766543 2244556666666777777777777777776653 345667777778888
Q ss_pred hcCCHHHHHHHHhhCC--CC-ChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 038516 466 KNGDLRAAESIFSQVL--HP-DLKCWNAL--------------LG-GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL 527 (708)
Q Consensus 466 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 527 (708)
..|++++|.+.|+++. .| +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 8888888888887763 22 22223222 22 3677889999999999999863 33577788888
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR 605 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 605 (708)
..+...|++++|.+.++++.+. .| +...+..++..+...|++++|...++++ ...+.+...|..++..+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 8999999999999999999873 34 4678889999999999999999999987 333346888999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 606 MVIQAAEQVLRLDPE------------DGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
+|...++++++..|+ ++..+..++.+|...|++++|..++++.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999 7888999999999999999999988744
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=6.3e-16 Score=157.01 Aligned_cols=230 Identities=14% Similarity=0.044 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHH
Q 038516 419 NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGY 495 (708)
Q Consensus 419 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 495 (708)
...+......+...|++++|..+++.+.+.. +.+...+..+..+|.+.|++++|+..|+++. +.+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777888899999999999999998875 5578889999999999999999999999885 45688999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChH-----------HHHHHHHHHhccCcHHHHHHHHHHhhHCC-CCcChHHHHHHHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEI-----------TFLSLLSACSHSGLVERGKILWNQMKEHS-LIPGHKHYSCMVS 563 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~ 563 (708)
...|++++|+..|+++.+. .|+.. .+..+...+...|++++|.++++++.+.. ..++...+..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999984 44422 22334678899999999999999999852 1125788999999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516 564 LLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA 642 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 642 (708)
.|.+.|++++|.+.++++ ...+.+...|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999997 3333568899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 038516 643 KMRRKMKGS 651 (708)
Q Consensus 643 ~~~~~~~~~ 651 (708)
..++++.+.
T Consensus 302 ~~~~~al~~ 310 (365)
T 4eqf_A 302 SNFLTALSL 310 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998764
No 32
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.1e-14 Score=155.69 Aligned_cols=387 Identities=11% Similarity=0.072 Sum_probs=264.9
Q ss_pred HHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC
Q 038516 240 ARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKP 316 (708)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 316 (708)
+..++.. +-+...|..++.. .+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++.... .|
T Consensus 3 e~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p 77 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VL 77 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CC
T ss_pred hhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC
Confidence 3444443 4578889999984 778999999999999876 3 5567999999999999999999999999865 47
Q ss_pred CHhHHHHHHHHH-cCCCCccchHH----HHHHHHHH-CCCC-chhHHhHHHHHHHh---------cCCChhHHHHHhhcC
Q 038516 317 DEYTFAAIISAT-SALPASAYGKP----LHALVIKT-GYDS-SVFVGTTLLNMYFK---------NGDAESPQKVFMLIA 380 (708)
Q Consensus 317 ~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~ 380 (708)
+...|...+... ...|+.+.|.+ +|+..+.. |..| +..+|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777766666433 45677777765 66666543 5443 45677777766554 455566666665554
Q ss_pred CCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH------hC---CC
Q 038516 381 EKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK------TG---HG 451 (708)
Q Consensus 381 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~------~~---~~ 451 (708)
+........+...|.. ++... +..+...++. ...+.+..|..++..... .. ++
T Consensus 158 ~~P~~~~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 4100000000001100 00000 0011111111 234567777776665321 11 23
Q ss_pred Cc--------hhHHHHHHHhhHhc----CCH----HHHHHHHhhCC---CCChHHHHHHHHHHHh-------cCChH---
Q 038516 452 VE--------MSVCGSLVDMYAKN----GDL----RAAESIFSQVL---HPDLKCWNALLGGYSH-------YGMAE--- 502 (708)
Q Consensus 452 ~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~---~~~~~~~~~li~~~~~-------~g~~~--- 502 (708)
|+ ...+...+...... ++. +.|..+|++.+ +.+...|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 33 23444444332221 222 46777888775 4578889988888876 79987
Q ss_pred ----HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh--HHHHHHHHHHHhcCCHHHHH
Q 038516 503 ----EAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH--KHYSCMVSLLSRAGLLDEAE 575 (708)
Q Consensus 503 ----~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~ 575 (708)
+|..+|++..+. +.|+ ...+..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.
T Consensus 300 ~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 300 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 899999999863 3554 66788888899999999999999999998 45642 47888899999999999999
Q ss_pred HHHHhCCCCCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 576 NLIAESPYSEI-RIELWRTLLST-CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 576 ~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
++|+++...+| +...+...+.. +...|+.++|..+++++++..|+++.+|..++.++.+.|+.++|+.+++++...+
T Consensus 377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999843323 33444433333 3468999999999999999999999999999999999999999999999998764
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=1.8e-15 Score=140.53 Aligned_cols=193 Identities=14% Similarity=0.083 Sum_probs=158.3
Q ss_pred CCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 038516 451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSL 526 (708)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l 526 (708)
+++...+..+...+.+.|++++|...|++.+ +.+...|..+...+.+.|++++|+..+++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 4566777888889999999999999999874 346788999999999999999999999999995 564 5678888
Q ss_pred HHHHhcc-----------CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHH
Q 038516 527 LSACSHS-----------GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRT 593 (708)
Q Consensus 527 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 593 (708)
...+... |++++|+..+++..+ +.|+ ...+..++.+|...|++++|+..++++ ... .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 8889999 999999999999987 4564 678889999999999999999999997 223 67899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
++.++...|++++|+..++++++++|+++.++..++.++...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988755
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=4.9e-17 Score=173.54 Aligned_cols=147 Identities=10% Similarity=0.002 Sum_probs=126.7
Q ss_pred cchhhHHHHHHhccCChHHHHHHhhcCC-------CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHH
Q 038516 48 PYMYNNVLSMYGRCGSIRDARQVFDEIP-------KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTS 120 (708)
Q Consensus 48 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 120 (708)
..+||+||++|+++|++++|..+|++|. .||+++||+||.+|++.|+ .++|.++|++|.+.|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 4589999999999999999999997753 6899999999999999999 9999999999999999999999999
Q ss_pred HHHHhccccch-HHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHhcC
Q 038516 121 LAQAVSLLEDQ-LMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-----DAVAWNSIILGNFKN 194 (708)
Q Consensus 121 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 194 (708)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+..+ .+.+...|.+.+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999998888776666666665554431 234555566677765
Q ss_pred C
Q 038516 195 D 195 (708)
Q Consensus 195 g 195 (708)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-14 Score=139.09 Aligned_cols=218 Identities=8% Similarity=-0.009 Sum_probs=176.0
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C----C----hHHHHH
Q 038516 421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P----D----LKCWNA 490 (708)
Q Consensus 421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~ 490 (708)
.+..+...+...|++++|..++..+.+.. .+...+..+..++...|++++|...|++... | + ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444555556666666666666666555 5566677777777888888888888777642 1 2 578888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcC
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAG 569 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 569 (708)
+...|...|++++|...|+++.+. .|+. ..+...|++++|...++.+.. ..| +...+..++..+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 999999999999999999999984 5663 345667889999999999987 334 3667888999999999
Q ss_pred CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 570 LLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 570 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
++++|...++++ ...+.+...|..++..+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988 3333568889999999999999999999999999999999999999999999999999999999988
Q ss_pred hcC
Q 038516 649 KGS 651 (708)
Q Consensus 649 ~~~ 651 (708)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=1.5e-14 Score=144.11 Aligned_cols=228 Identities=14% Similarity=0.037 Sum_probs=192.5
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHH
Q 038516 420 FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYS 496 (708)
Q Consensus 420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 496 (708)
..+......+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++. +.+..++..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 344556667788999999999999998875 4477788889999999999999999999874 457888999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHH-HHHH--------------HH-HHhccCcHHHHHHHHHHhhHCCCCcChHHHHH
Q 038516 497 HYGMAEEAFMVFEVILEHGLRPDEIT-FLSL--------------LS-ACSHSGLVERGKILWNQMKEHSLIPGHKHYSC 560 (708)
Q Consensus 497 ~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 560 (708)
..|++++|...++++.+. .|+... +..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 999999999999999985 454333 3322 22 3788999999999999998742 225778899
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516 561 MVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD 639 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 639 (708)
++..+...|++++|.+.++++ ...+.+...|..++..+...|++++|...++++++..|+++..+..++.+|...|+++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 999999999999999999987 2233468889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 038516 640 CVAKMRRKMKGS 651 (708)
Q Consensus 640 eA~~~~~~~~~~ 651 (708)
+|.+.++++.+.
T Consensus 258 ~A~~~~~~a~~~ 269 (327)
T 3cv0_A 258 LAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.63 E-value=8.8e-15 Score=154.28 Aligned_cols=385 Identities=9% Similarity=-0.021 Sum_probs=195.1
Q ss_pred ccHHHHHHHHhcCCChhHHHHHHHHHHhC-------CCCC-CcchHHHHHHHHhccCChhHHHHHHHHHHHhC------C
Q 038516 182 VAWNSIILGNFKNDKMKEGLSLFGAMVGS-------GVNP-TQFSYSMLLNACSRMGNFVCGKVIHARVIISN------T 247 (708)
Q Consensus 182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~ 247 (708)
..||.|...+...|++++|++.|++..+. ...| ...+|..+..++...|++++|...++++.+.. .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 34555555555566666666655554321 1122 23456667777777777777777776665431 0
Q ss_pred CC-ChhhHHHHHHhcc--cCCChHHHHHHHhccCC--C-ChhHHHHHHHH---HHcCCCchHHHHHHHHHHHcCCCCCCH
Q 038516 248 QV-DLPLENALLDMYS--KCSDTQTAFSVFTRIEN--P-DLVSWNSMIAG---YMENGNGEKAVDMFVALRRMSLLKPDE 318 (708)
Q Consensus 248 ~~-~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p~~ 318 (708)
.+ ...++..+..++. ..+++++|...|++..+ | +...+..+..+ +...++.++|++.+++..+. .+.+.
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcch
Confidence 11 2233443333333 34567788888877654 3 33444444433 34567888899999888765 33445
Q ss_pred hHHHHHHHHHc----CCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHH
Q 038516 319 YTFAAIISATS----ALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGH 394 (708)
Q Consensus 319 ~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 394 (708)
..+..+...+. ..++.+.|...++...... +.+..++..+...|.+.|++++|...++
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~----------------- 271 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLK----------------- 271 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHH-----------------
Confidence 55554443333 3456777777777776654 4455555556666655555555555544
Q ss_pred hcCCChHHHHHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHH
Q 038516 395 SRMGDGECAIKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAA 473 (708)
Q Consensus 395 ~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 473 (708)
+..+. .|+. .++..+...+...+.... .. ............+..+.|
T Consensus 272 --------------~al~~--~p~~~~~~~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A 319 (472)
T 4g1t_A 272 --------------KALEY--IPNNAYLHCQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHA 319 (472)
T ss_dssp --------------HHHHH--STTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHH
T ss_pred --------------HHHHh--CCChHHHHHHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHH
Confidence 43332 2222 222222211111000000 00 000000111112234566
Q ss_pred HHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHH-HHhccCcHHHHHHHHHHhh
Q 038516 474 ESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI--TFLSLLS-ACSHSGLVERGKILWNQMK 547 (708)
Q Consensus 474 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~ 547 (708)
...|+... +.+..++..+...|...|++++|+..|++.++....|... .+..+.. .....|++++|+..|++..
T Consensus 320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666553 3456678888889999999999999999998853332221 1222222 3457789999999999988
Q ss_pred HCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 548 EHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 548 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
+ +.|+........ ..+.+++++. ...|.++..|..++..+...|++++|+..+++++++.|.+|.+..
T Consensus 400 ~--i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 400 K--INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp H--SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred h--cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 7 556543322222 2333444333 223356788999999999999999999999999999999988777
Q ss_pred HHH
Q 038516 627 LLS 629 (708)
Q Consensus 627 ~l~ 629 (708)
.+|
T Consensus 469 ~~G 471 (472)
T 4g1t_A 469 WNG 471 (472)
T ss_dssp ---
T ss_pred cCC
Confidence 665
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=6.7e-16 Score=164.91 Aligned_cols=127 Identities=17% Similarity=0.191 Sum_probs=101.9
Q ss_pred CCchhHHHHHHHhhHhcCCHHHHHHHHhhC-------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 038516 451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQV-------LHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF 523 (708)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 523 (708)
.....+||+||++|++.|++++|.++|++| ..||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334567888888888888888888888654 3688888888888888888888888888888888888898889
Q ss_pred HHHHHHHhccCc-HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 038516 524 LSLLSACSHSGL-VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENL 577 (708)
Q Consensus 524 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 577 (708)
+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 988888888887 477888888888888888888888887766665444444444
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=3.1e-14 Score=137.98 Aligned_cols=245 Identities=10% Similarity=-0.121 Sum_probs=197.5
Q ss_pred HHhcCCChHHHHHHHHHHhHCCC--cc-CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516 393 GHSRMGDGECAIKLFCKMCREGL--KC-DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD 469 (708)
Q Consensus 393 ~~~~~~~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 469 (708)
.+...|++++|+..|+++.+... .| +..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|+
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 34567889999999999988642 12 34577788888899999999999999998875 4567889999999999999
Q ss_pred HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 038516 470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQM 546 (708)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 546 (708)
+++|...|++.. +.+...|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++..
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999885 346889999999999999999999999999984 676666555666667789999999999888
Q ss_pred hHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 547 KEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 547 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
... .+++...+ .++..+...++.++|...++++....|. ...|..++..+...|++++|...++++++++|++
T Consensus 171 ~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 171 FEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred Hhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 764 22333333 4777888889999999999887444232 5778889999999999999999999999999987
Q ss_pred cchHHHHHHHHHhcCCchHHHHHH
Q 038516 622 GTTHILLSNLYAATGRWDCVAKMR 645 (708)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~eA~~~~ 645 (708)
... .+.++...|++++|.+.+
T Consensus 249 ~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHH---HHHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHHhhHHHH
Confidence 553 467888899999998765
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=2e-13 Score=141.84 Aligned_cols=372 Identities=10% Similarity=0.033 Sum_probs=207.9
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCCh---HHHHHHHhccCCCChhHHHHHHHHHHcCC--
Q 038516 222 LLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDT---QTAFSVFTRIENPDLVSWNSMIAGYMENG-- 296 (708)
Q Consensus 222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g-- 296 (708)
+...+.+.|++++|..+|....+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3445556777788888887777665 334445555666667777 88888888877666666777777555555
Q ss_pred ---CchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCc---cchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCCh
Q 038516 297 ---NGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPAS---AYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAE 370 (708)
Q Consensus 297 ---~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 370 (708)
++++|+..|++..+. |... .+..+...+...+.. ..+...+......| +......|...|...+.++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~-g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFAN-GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CHHHHHHHHHHHHHHHHT-TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCcCHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 678899999988876 4333 444444444444433 33444444444444 3445566777777766544
Q ss_pred hH----HHHHhhcCCCCEeeehhhHHHHhcCC---ChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHH
Q 038516 371 SP----QKVFMLIAEKDIVLWTEMIIGHSRMG---DGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHS 443 (708)
Q Consensus 371 ~A----~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 443 (708)
.+ ..+++.....++..+..|...|...| +.++|+..|++..+.|
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----------------------------- 209 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG----------------------------- 209 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----------------------------
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-----------------------------
Confidence 43 33344444444445555555555555 5555555555555544
Q ss_pred HHHHhCCCCchhHHHHHHHhhHhc----CCHHHHHHHHhhCCCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCC
Q 038516 444 QAEKTGHGVEMSVCGSLVDMYAKN----GDLRAAESIFSQVLHPDLKCWNALLGG-Y--SHYGMAEEAFMVFEVILEHGL 516 (708)
Q Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~ 516 (708)
.++...+..|..+|... +++++|...|+...+.+...+..|... + ...+++++|+.+|++..+.|
T Consensus 210 -------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 210 -------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp -------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred -------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 22222223344444332 567777777766653355666666665 3 45678888888888888765
Q ss_pred CCChHHHHHHHHHHhccC-----cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCC
Q 038516 517 RPDEITFLSLLSACSHSG-----LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIR 587 (708)
Q Consensus 517 ~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 587 (708)
+...+..|...|. .| ++++|.++|++.. .| +...+..|...|.. ..++++|..+++++... .+
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~ 353 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-GQ 353 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-TC
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-Ch
Confidence 5555555655555 44 8888888888776 22 45566667777765 34888888888887443 34
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--hcCCchHHHHHHHHHhc
Q 038516 588 IELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA--ATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 588 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~eA~~~~~~~~~ 650 (708)
+.....|...|.. ..|.++|...++++.+..+.. ....+..+.. ..++..+|..+.++.++
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5556666666654 458888888888888776543 3334443332 23456677776665544
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.7e-14 Score=134.08 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=184.8
Q ss_pred ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC--CCc----hhHHHHH
Q 038516 387 WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGH--GVE----MSVCGSL 460 (708)
Q Consensus 387 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l 460 (708)
|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+....+... .++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4456667777788888888888777765 6667777777778888888888888877765321 111 5778888
Q ss_pred HHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHH
Q 038516 461 VDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVE 537 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 537 (708)
...|...|++++|...|++.. .|+. ..+...|++++|...++++... .|+ ...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence 899999999999999998875 3543 4566778899999999999984 554 456777888999999999
Q ss_pred HHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 538 RGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 538 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
+|...++++.+.. +.+...+..++..+...|++++|...++++ ...+.+...|..++..+...|+.++|...++++++
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999998742 224778889999999999999999999987 33334688899999999999999999999999999
Q ss_pred cC------CCCcchHHHHHHH
Q 038516 617 LD------PEDGTTHILLSNL 631 (708)
Q Consensus 617 ~~------p~~~~~~~~l~~~ 631 (708)
+. |++..++..+..+
T Consensus 236 ~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHHHT
T ss_pred hChhhcCCCchHHHHHHHHHh
Confidence 99 8877776666543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=2.6e-13 Score=129.48 Aligned_cols=197 Identities=11% Similarity=-0.006 Sum_probs=167.6
Q ss_pred hhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 038516 454 MSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC 530 (708)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 530 (708)
...+..+...+...|++++|...|+++. +.+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4566777888888999999999998874 4567888899999999999999999999998863 23567788888899
Q ss_pred hccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 531 SHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 531 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
...|++++|.++++++.+.+..| +...+..++..+...|++++|.+.++++ ...+.+...+..++..+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998743445 3667888899999999999999999887 223246888889999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..++++++..|++...+..++.+|...|++++|.+.++++.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=1.3e-13 Score=133.45 Aligned_cols=240 Identities=13% Similarity=0.009 Sum_probs=144.5
Q ss_pred HHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC--chhHHHHHHHhhHhcC
Q 038516 391 IIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGV--EMSVCGSLVDMYAKNG 468 (708)
Q Consensus 391 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 468 (708)
...+...|++++|+..|++..+... .+...+..+...+...|++++|...+..+.+.+..+ ....+..+...+...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 3444455555555555555544321 112234444444555555555555555544422111 1223556666677777
Q ss_pred CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHH
Q 038516 469 DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 469 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
++++|...|++.. +.+...|..+...|...|++++|+..|++..+. .|+ ...+..+...+...+++++|.+.|+
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776653 345567777777777777777777777777764 443 3444444424444457778887777
Q ss_pred HhhHCCCCcC-hHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 038516 545 QMKEHSLIPG-HKHYSCMVSLLSRAGL---LDEAENLIAES----PYSEIR------IELWRTLLSTCVAKRNSRMVIQA 610 (708)
Q Consensus 545 ~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 610 (708)
++.+ ..|+ ...+..++..+...|+ +++|...++++ ... |+ ...+..++..+...|++++|...
T Consensus 167 ~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 167 KVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG-GAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776 3343 5566667777777776 66677666665 111 22 25677788888899999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAATG 636 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~~g 636 (708)
++++++++|+++.++..++.+....+
T Consensus 244 ~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999988888877665544
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.9e-12 Score=125.08 Aligned_cols=218 Identities=12% Similarity=-0.017 Sum_probs=162.9
Q ss_pred HHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh----cCCHHHHHHHHhhCC-CCChHHHHHHHHHHHh-
Q 038516 424 GALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK----NGDLRAAESIFSQVL-HPDLKCWNALLGGYSH- 497 (708)
Q Consensus 424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~- 497 (708)
.+-..+...|++++|...++...+. .+...+..+...|.. .+++++|...|++.. ..+...+..+...|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 87 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 3333444445555555555554441 233445556666666 777888888777664 2366777788888888
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh---
Q 038516 498 ---YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH----SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR--- 567 (708)
Q Consensus 498 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 567 (708)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|.++|++..+.+ +...+..+...|..
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG 161 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence 888888888888888864 66677777777877 888999999998888755 45567778888887
Q ss_pred -cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCc
Q 038516 568 -AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA----TGRW 638 (708)
Q Consensus 568 -~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 638 (708)
.+++++|...++++... .++..+..+...+.. .+++++|...++++++.+| +..+..|+.+|.. .|++
T Consensus 162 ~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence 88999999998887443 457778888888888 8899999999999998866 6678889999998 8999
Q ss_pred hHHHHHHHHHhcCCC
Q 038516 639 DCVAKMRRKMKGSML 653 (708)
Q Consensus 639 ~eA~~~~~~~~~~~~ 653 (708)
++|.+.+++..+.+.
T Consensus 239 ~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 239 KQAIENFKKGCKLGA 253 (273)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999988876653
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=5.8e-13 Score=124.50 Aligned_cols=198 Identities=11% Similarity=-0.002 Sum_probs=164.7
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA 529 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 529 (708)
+...+..+...+...|++++|.+.|+.+. +.+...|..+...|...|++++|...++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566777888888899999998888764 3467788889999999999999999999998852 3356778888888
Q ss_pred Hhcc-CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 530 CSHS-GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 530 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
+... |++++|...++++.+.+..|+ ...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 9999 999999999999987433343 567888899999999999999999887 2232457888889999999999999
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 607 VIQAAEQVLRLDP-EDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 607 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999 88888989999999999999999999888654
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.54 E-value=1.1e-13 Score=131.23 Aligned_cols=197 Identities=12% Similarity=0.076 Sum_probs=149.1
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA 529 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 529 (708)
....+..+...+...|++++|...|+++. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45556677778888899999988888774 3467788888899999999999999999998852 3356777888888
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
+...|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...++++ ...+.+...+..++..+...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988742 234667888899999999999999999887 223246788888889999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988764
No 47
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=2.8e-13 Score=125.67 Aligned_cols=191 Identities=17% Similarity=0.084 Sum_probs=156.1
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHH
Q 038516 482 HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYS 559 (708)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~ 559 (708)
+++...+..+...+.+.|++++|+..|++.++. .| +...+..+..++...|++++|+..+++..+ +.|+ ...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHH
Confidence 356778889999999999999999999999985 56 466788888899999999999999999997 4464 67888
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516 560 CMVSLLSRA-----------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL 627 (708)
Q Consensus 560 ~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 627 (708)
.++.++... |++++|...++++ ...|.+...|..+...+...|++++|+..++++++++ +++..+..
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 899999999 9999999999998 3333468889999999999999999999999999999 99999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhcc
Q 038516 628 LSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEF 703 (708)
Q Consensus 628 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 703 (708)
++.+|...|++++|...++++.+. +|....++..+..+..+.++..+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--------------------------APKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999998764 45555566666665555555555443
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=5.9e-13 Score=133.74 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=185.0
Q ss_pred eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHhh
Q 038516 386 LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI-LKQGEMIHSQAEKTGHGVEMSVCGSLVDMY 464 (708)
Q Consensus 386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 464 (708)
.|+.+...+...|++++|+..+++.++.. +-+...|..+..++...|+ +++|...++.+.+.. +.+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 35555666667777777777777776642 2234455666666667775 777777777777665 44667788888888
Q ss_pred HhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhc-cCcHHHH
Q 038516 465 AKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSH-SGLVERG 539 (708)
Q Consensus 465 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~~~~~~a 539 (708)
...|++++|+..|++++ +.+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHH
Confidence 88999999999998875 457788999999999999999999999999985 55 46678888888887 5665666
Q ss_pred -----HHHHHHhhHCCCCcC-hHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--------C
Q 038516 540 -----KILWNQMKEHSLIPG-HKHYSCMVSLLSRAG--LLDEAENLIAESPYSEIRIELWRTLLSTCVAKR--------N 603 (708)
Q Consensus 540 -----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~ 603 (708)
++.+++.++ +.|+ ...|..+..+|...| ++++|.+.+.++...+.+...+..++..+...| +
T Consensus 255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 577888876 5564 667888888888888 688999988888444456778888888887763 2
Q ss_pred -HHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 038516 604 -SRMVIQAAEQV-LRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 604 -~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 635 (708)
.++|+.+++++ .+++|.....|..++..+..+
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58899999999 899999999888888766553
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=9.3e-13 Score=118.75 Aligned_cols=166 Identities=13% Similarity=0.068 Sum_probs=142.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHH
Q 038516 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSC 560 (708)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ 560 (708)
.+...|..+...|...|++++|++.|++.++. .| +...+..+..++.+.|++++|...++..... .| +...+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHH
Confidence 35678888999999999999999999999885 56 4566888888899999999999999988773 33 3566777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516 561 MVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD 639 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 639 (708)
++..+...+++++|...+.++ ...+.+...+..++..+...|++++|+..++++++++|+++.+|..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888899999999999999887 3333568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 038516 640 CVAKMRRKMKGSM 652 (708)
Q Consensus 640 eA~~~~~~~~~~~ 652 (708)
+|++.++++.+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887653
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.52 E-value=5e-13 Score=138.86 Aligned_cols=344 Identities=9% Similarity=-0.016 Sum_probs=225.6
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCc---cchHHHHHHHHHHCCCCchhHHhHHHHHH
Q 038516 287 SMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPAS---AYGKPLHALVIKTGYDSSVFVGTTLLNMY 363 (708)
Q Consensus 287 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 363 (708)
.+...+.+.|++++|+.+|++..+. |. ++ .+..+-..+...|+. ++|...|+...+. +...+..|...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~-g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL-GY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-TC-CT--GGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 3566778899999999999999877 43 22 333344445556766 8898888888754 455566666655
Q ss_pred HhcC-----CChhHHHHHhhcCCC-CEeeehhhHHHHhcCCChH---HHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516 364 FKNG-----DAESPQKVFMLIAEK-DIVLWTEMIIGHSRMGDGE---CAIKLFCKMCREGLKCDNFALSGALSACADLAI 434 (708)
Q Consensus 364 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 434 (708)
...+ ++++|...|+...++ +...+..|...|...+... ++.+.+......|. ......+...+...+.
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT 156 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence 5554 677898888877654 5567777888887766543 34555555554443 2233344445555553
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC---CHHHHHHHHhhCC---CCChHHHHHHHHHHHhc----CChHHH
Q 038516 435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG---DLRAAESIFSQVL---HPDLKCWNALLGGYSHY----GMAEEA 504 (708)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A 504 (708)
++.+......+.+.-...++..+..|..+|...| +.++|.+.|+... .++...+..+...|... +++++|
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 3333333222222222334447788888898999 8999999998774 34555557777777655 699999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHH-H--hccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC-----CHHHHHH
Q 038516 505 FMVFEVILEHGLRPDEITFLSLLSA-C--SHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG-----LLDEAEN 576 (708)
Q Consensus 505 ~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~ 576 (708)
+.+|++.. .| +...+..|... + ...+++++|.++|++..+.| +...+..|...|. .| ++++|.+
T Consensus 237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999987 43 44455555554 3 56899999999999998866 5666777888887 55 9999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHH
Q 038516 577 LIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKM 648 (708)
Q Consensus 577 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~ 648 (708)
.++++. +.++..+..+...|.. ..|.++|...++++.+ ++++.....|+.+|.. ..+.++|..++++.
T Consensus 309 ~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 309 HFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 999998 4788888888877776 3499999999999876 4667789999999986 46899999999999
Q ss_pred hcCCC
Q 038516 649 KGSML 653 (708)
Q Consensus 649 ~~~~~ 653 (708)
.+.|.
T Consensus 385 ~~~g~ 389 (452)
T 3e4b_A 385 KAQDT 389 (452)
T ss_dssp HTTCC
T ss_pred HHCCC
Confidence 88764
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=8.6e-13 Score=127.53 Aligned_cols=225 Identities=5% Similarity=-0.100 Sum_probs=183.1
Q ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC----hHHHHHHHHHH
Q 038516 422 LSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD----LKCWNALLGGY 495 (708)
Q Consensus 422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~ 495 (708)
+......+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|++... ++ ...|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3345566788999999999999998764 34556788888999999999999999998753 22 33488999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDE 573 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 573 (708)
...|++++|+..|+++.+. .| +...+..+...+...|++++|.+.+++..+. .| +...+..++..+...+++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999995 44 5577888888999999999999999999874 45 36677777734555669999
Q ss_pred HHHHHHhC-CCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCCchHH
Q 038516 574 AENLIAES-PYSEIRIELWRTLLSTCVAKRN---SRMVIQAAEQVLRLD---PED-----GTTHILLSNLYAATGRWDCV 641 (708)
Q Consensus 574 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~eA 641 (708)
|.+.++++ ...+.+...+..+...+...|+ .++|...+++++++. |+. ..+|..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 2332457788888888888888 888999999999876 442 25788999999999999999
Q ss_pred HHHHHHHhcC
Q 038516 642 AKMRRKMKGS 651 (708)
Q Consensus 642 ~~~~~~~~~~ 651 (708)
.+.++++.+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998764
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=1.4e-12 Score=131.01 Aligned_cols=226 Identities=8% Similarity=0.001 Sum_probs=192.4
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC-HHHHHHHHhhCC---CCChHHHHHHHHHH
Q 038516 420 FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD-LRAAESIFSQVL---HPDLKCWNALLGGY 495 (708)
Q Consensus 420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 495 (708)
..+..+...+...|++++|...++.+.+.. +.+...++.+..++...|+ +++|+..|++++ +.+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 345566666788899999999999998876 4567888999999999997 999999999885 45788999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHh-cCCHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSR-AGLLD 572 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~ 572 (708)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..++++++ +.|+ ...|+.++.+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999995 56 567788888999999999999999999998 4554 7789999999999 66658
Q ss_pred HH-----HHHHHhC-CCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 038516 573 EA-----ENLIAES-PYSEIRIELWRTLLSTCVAKR--NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG-------- 636 (708)
Q Consensus 573 ~A-----~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 636 (708)
+| ++.++++ ...+.+...|..+...+...| ++++|...++++ +.+|+++.++..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4777776 334356889999999998888 689999999998 999999999999999999985
Q ss_pred -CchHHHHHHHHH-hcC
Q 038516 637 -RWDCVAKMRRKM-KGS 651 (708)
Q Consensus 637 -~~~eA~~~~~~~-~~~ 651 (708)
.+++|+++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258999999988 553
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=4.2e-13 Score=127.24 Aligned_cols=215 Identities=16% Similarity=0.091 Sum_probs=149.3
Q ss_pred EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHh
Q 038516 384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDM 463 (708)
Q Consensus 384 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 463 (708)
...|..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------~~~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------KEDAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC------------------------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHH
Confidence 3445555666666666666666666665431 2234455566667
Q ss_pred hHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 038516 464 YAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGK 540 (708)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 540 (708)
+...|++++|...|+++. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 777777777777777663 3467788888888999999999999999988853 335667778888899999999999
Q ss_pred HHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 541 ILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
..++++.+.. +.+...+..++..+.+.|++++|...++++ ...+.+...|..+...+...|+.++|...++++++++|
T Consensus 146 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 146 PYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999988732 234677888999999999999999999887 22324688899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcC
Q 038516 620 EDGTTHILLSNLYAATG 636 (708)
Q Consensus 620 ~~~~~~~~l~~~~~~~g 636 (708)
+++.++..++.+....|
T Consensus 225 ~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 225 DHMLALHAKKLLGHHHH 241 (243)
T ss_dssp TCHHHHHHHTC------
T ss_pred chHHHHHHHHHHHhhcc
Confidence 99988887776554433
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=9.6e-13 Score=127.39 Aligned_cols=218 Identities=14% Similarity=0.048 Sum_probs=179.5
Q ss_pred hCcccHHHHHHHHHHHHHhCC---CCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHH
Q 038516 430 ADLAILKQGEMIHSQAEKTGH---GVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEE 503 (708)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 503 (708)
...|++++|...++.+.+... +.+...+..+...+...|++++|...|+++. +.+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456889999999999887632 1246788889999999999999999999885 4568899999999999999999
Q ss_pred HHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 038516 504 AFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES- 581 (708)
Q Consensus 504 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 581 (708)
|...|+++.+. .| +...+..+...+...|++++|...++++.+ ..|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999995 44 567788888999999999999999999987 4565555555556667889999999999776
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 582 PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED----GTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 582 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
...+++...+ .++..+...++.++|...++++++..|+. +..+..++.+|...|++++|...++++.+..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2222333334 36677778889999999999999887743 6789999999999999999999999998753
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=4.3e-12 Score=120.96 Aligned_cols=200 Identities=12% Similarity=-0.004 Sum_probs=151.2
Q ss_pred HHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH
Q 038516 426 LSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE 502 (708)
Q Consensus 426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 502 (708)
...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++. +.+...|..+...|...|+++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence 333344444444444444444332 3345566677777778888888888887764 346778888888999999999
Q ss_pred HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 503 EAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 503 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
+|.++++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++
T Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999887434554 4567777788899999999999999988742 224677888999999999999999999987
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516 582 -PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL 627 (708)
Q Consensus 582 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 627 (708)
...+.+...+..+...+...|+.++|...++++++..|+++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 3343567788888889999999999999999999999998875543
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=3.4e-13 Score=141.09 Aligned_cols=206 Identities=13% Similarity=0.047 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCH-HHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038516 436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDL-RAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVI 511 (708)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 511 (708)
+.+...+...... .+.+...+..+...|...|++ ++|++.|++.. +.+...|..+...|...|++++|...|+++
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444433322 234677778888888899999 99999998874 345789999999999999999999999999
Q ss_pred HHCCCCCChHHHHHHHHHHhcc---------CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc--------CCHHH
Q 038516 512 LEHGLRPDEITFLSLLSACSHS---------GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA--------GLLDE 573 (708)
Q Consensus 512 ~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~ 573 (708)
.+. .|+...+..+...+... |++++|.+.|+++.+ +.|+ ...|..++.+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 984 68877888888899999 999999999999988 4454 77888999999998 99999
Q ss_pred HHHHHHhCCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516 574 AENLIAESPY-SE---IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 574 A~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
|.+.++++.. .+ .+...|..++.++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999833 32 3788999999999999999999999999999999999999999999999999999987543
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=5.3e-12 Score=121.99 Aligned_cols=224 Identities=13% Similarity=0.009 Sum_probs=174.7
Q ss_pred ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038516 387 WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACAD----LAILKQGEMIHSQAEKTGHGVEMSVCGSLVD 462 (708)
Q Consensus 387 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 462 (708)
+..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...++...+.+ ++..+..+..
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3445555666667777777777666622 23445555555666 777777777777777665 5666777788
Q ss_pred hhHh----cCCHHHHHHHHhhCC-CCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-
Q 038516 463 MYAK----NGDLRAAESIFSQVL-HPDLKCWNALLGGYSH----YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH- 532 (708)
Q Consensus 463 ~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~- 532 (708)
+|.. .+++++|...|++.. ..+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC
Confidence 8888 899999999988775 3467788889999998 999999999999999965 55667777777777
Q ss_pred ---cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----c
Q 038516 533 ---SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----K 601 (708)
Q Consensus 533 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 601 (708)
.+++++|..+|++..+.+ +...+..+...|.. .+++++|...++++... .+...+..+...+.. .
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCcc
Confidence 899999999999998854 45677888999999 99999999999988444 347788888888988 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcc
Q 038516 602 RNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 602 ~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
++.++|...+++++++.|+++.
T Consensus 236 ~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp CCSTTHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999887543
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=1e-11 Score=115.93 Aligned_cols=205 Identities=13% Similarity=0.008 Sum_probs=159.7
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHh
Q 038516 421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSH 497 (708)
Q Consensus 421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 497 (708)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++. +.+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44445555556666666666666655543 3345667778888888888888888888774 3467788889999999
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHH
Q 038516 498 Y-GMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 498 ~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 574 (708)
. |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .| +...+..++..+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 9 999999999999998433454 456777888999999999999999999873 34 367788899999999999999
Q ss_pred HHHHHhC-CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 575 ENLIAES-PYSE-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 575 ~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
...++++ ...+ .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999887 2232 4567777777778899999999999999999999998766554
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.46 E-value=5.6e-13 Score=137.60 Aligned_cols=260 Identities=14% Similarity=0.039 Sum_probs=180.8
Q ss_pred hHHHHhcCCChHHHHHHHHHHhHCCCccCH----HHHHHHHHHHhCcccHHHHHHHHHHHHHh----CC-CCchhHHHHH
Q 038516 390 MIIGHSRMGDGECAIKLFCKMCREGLKCDN----FALSGALSACADLAILKQGEMIHSQAEKT----GH-GVEMSVCGSL 460 (708)
Q Consensus 390 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 460 (708)
+...+...|++++|...|++..+.+.. +. ..+..+...+...|++++|...++...+. +. +.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344555666666666666666554211 11 24555555666667777777666655432 11 2234566677
Q ss_pred HHhhHhcCCHHHHHHHHhhCCC---------CChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC
Q 038516 461 VDMYAKNGDLRAAESIFSQVLH---------PDLKCWNALLGGYSHYGM-----------------AEEAFMVFEVILEH 514 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~ 514 (708)
...|...|++++|...|++... ....++..+...|...|+ +++|+..+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 7788888888888888876631 124467778888888888 88888888887652
Q ss_pred ----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC-CCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 038516 515 ----GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHS-LIPG----HKHYSCMVSLLSRAGLLDEAENLIAES--- 581 (708)
Q Consensus 515 ----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 581 (708)
+-.|. ...+..+...+...|++++|...+++..+.. -.++ ...+..++..|...|++++|...++++
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 11121 2356677778889999999999999887631 0111 236788889999999999999998876
Q ss_pred -CCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 582 -PYSE---IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 582 -~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
+... .....+..+...+...|++++|...+++++++.++. ..++..++.+|...|++++|...+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1110 114567788888999999999999999999875543 33788999999999999999999998755
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=2.2e-12 Score=128.83 Aligned_cols=259 Identities=18% Similarity=0.108 Sum_probs=186.1
Q ss_pred HHHHhcCCChHHHHHHHHHHhHCCCccC----HHHHHHHHHHHhCcccHHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 038516 391 IIGHSRMGDGECAIKLFCKMCREGLKCD----NFALSGALSACADLAILKQGEMIHSQAEKT----GHG-VEMSVCGSLV 461 (708)
Q Consensus 391 i~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 461 (708)
...+...|++++|...|+++.+.... + ...+..+...+...|++++|...+...... +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 44555667777777777766654211 1 234555666666777777777776654432 211 1245667778
Q ss_pred HhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 038516 462 DMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGM--------------------AEEAFMVFEVIL 512 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 512 (708)
..|...|++++|...+++... ++ ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 888888999999888877631 22 3477788888888899 899999888876
Q ss_pred HC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 038516 513 EH----GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES- 581 (708)
Q Consensus 513 ~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 581 (708)
.. +-.|. ...+..+...+...|++++|...+++..+. +..+ ....+..++..+...|++++|...++++
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11111 235677777889999999999999988754 1111 1347888899999999999999998876
Q ss_pred ---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 582 ---PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 582 ---~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
+.. ++ ...+..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|...++++
T Consensus 251 ~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 251 LLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 111 12 4567788888999999999999999999876544 336889999999999999999999988
Q ss_pred hcC
Q 038516 649 KGS 651 (708)
Q Consensus 649 ~~~ 651 (708)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 764
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=2.7e-12 Score=139.50 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=143.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHH
Q 038516 484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCM 561 (708)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l 561 (708)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ...+..+..++.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 4567888899999999999999999999884 665 56788888899999999999999999887 5565 6788999
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516 562 VSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC 640 (708)
Q Consensus 562 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 640 (708)
+.+|...|++++|++.++++ ...+.+...|..++..+...|++++|+..++++++++|+++.++..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 33434688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 038516 641 VAKMRRKMKG 650 (708)
Q Consensus 641 A~~~~~~~~~ 650 (708)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887644
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=5e-12 Score=118.45 Aligned_cols=165 Identities=7% Similarity=-0.101 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHH
Q 038516 485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVS 563 (708)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 563 (708)
+..|......+...|++++|+..|++.++....++...+..+..++...|++++|++.+++..+ ..|+ ...+..++.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444444445555555555555555555432113444444444455555555555555555544 2232 334444555
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHH
Q 038516 564 LLSRAGLLDEAENLIAESP-YSEIRI-------ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTTHILLSNLYA 633 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~ 633 (708)
+|...|++++|...++++. ..|.+. ..|..++..+...|++++|+..++++++++|+ ++.++..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 5555555555555554441 111122 23444444455555555555555555555555 5555555555555
Q ss_pred hcCCc---------------------------hHHHHHHHHHhcC
Q 038516 634 ATGRW---------------------------DCVAKMRRKMKGS 651 (708)
Q Consensus 634 ~~g~~---------------------------~eA~~~~~~~~~~ 651 (708)
..|+. ++|...+++..+.
T Consensus 165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55554 9999999988764
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=1.5e-12 Score=134.03 Aligned_cols=193 Identities=19% Similarity=0.119 Sum_probs=98.8
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHH
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGM--------------------AEEAFM 506 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 506 (708)
++..+...|...|++++|...+++... ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344445555555555555555554421 11 2345555555555565 566665
Q ss_pred HHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHH
Q 038516 507 VFEVILEH----GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAEN 576 (708)
Q Consensus 507 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 576 (708)
.+++..+. +-.|. ..++..+...+...|++++|...+++..+. +..+ ....+..++..|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55554431 10111 123444555556666666666666655542 1001 12245555666666666666666
Q ss_pred HHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHH
Q 038516 577 LIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHILLSNLYAATGRWDCVA 642 (708)
Q Consensus 577 ~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~ 642 (708)
.++++ +.. ++ ...+..++..+...|++++|...+++++++.+.. ..++..++.+|...|++++|.
T Consensus 249 ~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 249 YYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 65554 111 11 3345555555666666666666666666554332 334556666666666666666
Q ss_pred HHHHHHh
Q 038516 643 KMRRKMK 649 (708)
Q Consensus 643 ~~~~~~~ 649 (708)
+.+++..
T Consensus 328 ~~~~~al 334 (406)
T 3sf4_A 328 HFAEKHL 334 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 64
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=3.4e-12 Score=133.44 Aligned_cols=178 Identities=10% Similarity=0.038 Sum_probs=157.3
Q ss_pred HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHH
Q 038516 470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMA-EEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
++++...++... +.+...|..+...|...|++ ++|+..|+++.+. .|+ ...+..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666553 34788899999999999999 9999999999985 554 6778889999999999999999999
Q ss_pred HhhHCCCCcChHHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 038516 545 QMKEHSLIPGHKHYSCMVSLLSRA---------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK--------RNSRM 606 (708)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------~~~~~ 606 (708)
+..+ +.|+...+..++..|... |++++|.+.++++ ...+.+...|..++.++... |++++
T Consensus 162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9997 557778899999999999 9999999999998 33335688999999999988 99999
Q ss_pred HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 607 VIQAAEQVLRLDP---EDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 607 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
|+..++++++++| +++.+|..++.+|...|++++|.+.++++.+.
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999998764
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=6.9e-12 Score=112.98 Aligned_cols=166 Identities=13% Similarity=0.085 Sum_probs=143.8
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLS 528 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 528 (708)
+..+|..+...|.+.|++++|++.|++.+ +.+..+|..+...|.+.|++++|+..+++.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56678889999999999999999999875 457888999999999999999999999999885 44 4556777777
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
.+...++++.|...+.+..+ ..| +...+..++..|.+.|++++|++.++++ ...|.+...|..++.++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999887 334 4677888999999999999999999987 3343578899999999999999999
Q ss_pred HHHHHHHHHhcCCCCc
Q 038516 607 VIQAAEQVLRLDPEDG 622 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~ 622 (708)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999864
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=5.4e-10 Score=119.84 Aligned_cols=218 Identities=7% Similarity=-0.045 Sum_probs=160.5
Q ss_pred HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHH-HHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC
Q 038516 402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGE-MIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV 480 (708)
Q Consensus 402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 480 (708)
.+..+|++.+.. .+-....|.....-+...|+.+.|. .+++..... .+.+...+-.++....+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345567666654 2334556666666666778888886 999988764 3556667778888888999999999999887
Q ss_pred CC-------------CC------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHhc-c
Q 038516 481 LH-------------PD------------LKCWNALLGGYSHYGMAEEAFMVFEVILEH-GLRPDEITFLSLLSACSH-S 533 (708)
Q Consensus 481 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~ 533 (708)
.. |+ ...|...+....+.|+.+.|..+|.++.+. + .+....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 52 32 236888888888899999999999999885 2 1123333322222223 3
Q ss_pred CcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 038516 534 GLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLSTCVAKRNSRMVIQ 609 (708)
Q Consensus 534 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~ 609 (708)
++.+.|.++|+...+. ..-+...+...++.....|+.+.|..+|+++....| ...+|...+..-...|+.+.+..
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5689999999999885 223455667888888899999999999999844333 35678888888889999999999
Q ss_pred HHHHHHhcCCCCcc
Q 038516 610 AAEQVLRLDPEDGT 623 (708)
Q Consensus 610 ~~~~~~~~~p~~~~ 623 (708)
+.+++.+..|+++.
T Consensus 563 v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 563 LEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHSTTCCH
T ss_pred HHHHHHHhCCCCcH
Confidence 99999999999865
No 67
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=8.3e-12 Score=128.44 Aligned_cols=154 Identities=15% Similarity=0.026 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC-h
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGL-RPD----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG-H 555 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~ 555 (708)
.++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+. +..+. .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 4677778888888888888888888775310 122 235777777888899999999999887753 11111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q 038516 556 KHYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE------D 621 (708)
Q Consensus 556 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 621 (708)
.++..++..|...|++++|...++++ +.. ++ ...+..+...+...|++++|...+++++++.+. .
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 346 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE 346 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcch
Confidence 56778899999999999999998876 111 12 556788888899999999999999999987433 3
Q ss_pred cchHHHHHHHHHhcCCchH
Q 038516 622 GTTHILLSNLYAATGRWDC 640 (708)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~e 640 (708)
..++..++.+|...|+...
T Consensus 347 ~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 347 LTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHhhHhHH
Confidence 5568889999999887743
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=1.4e-09 Score=116.71 Aligned_cols=437 Identities=9% Similarity=0.001 Sum_probs=280.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCC---hHHHHH
Q 038516 196 KMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSD---TQTAFS 272 (708)
Q Consensus 196 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~ 272 (708)
...+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|. .+.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 4555565666665543 347888999999998889999999999999887 46677888888888888888 999999
Q ss_pred HHhccCC-----CChhHHHHHHHHHHcCCCc--------hHHHHHHHHHHHcCCC-CCC-HhHHHHHHHHHcC-------
Q 038516 273 VFTRIEN-----PDLVSWNSMIAGYMENGNG--------EKAVDMFVALRRMSLL-KPD-EYTFAAIISATSA------- 330 (708)
Q Consensus 273 ~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~-~~t~~~ll~~~~~------- 330 (708)
+|++... |++..|...+.-..+.++. +...++|+.....-|. .|+ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9988764 6777787777655555443 2334677766655455 443 3455555544332
Q ss_pred --CCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHH
Q 038516 331 --LPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFC 408 (708)
Q Consensus 331 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 408 (708)
.++++.+..+|..++......-..+|......-...+ ...+.+++.+. ..+++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----------------~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----------------SAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----------------hHHHHHHHHHHH
Confidence 1234556667766663211112233332222111111 11122221110 112233333333
Q ss_pred HHhH--CCC----c-----------c-----C---HHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHhCCCCchhH
Q 038516 409 KMCR--EGL----K-----------C-----D---NFALSGALSACADLA-------ILKQGEMIHSQAEKTGHGVEMSV 456 (708)
Q Consensus 409 ~m~~--~g~----~-----------p-----~---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~ 456 (708)
++.. .++ + | + ...|...+.--...+ ..+....+++..... ++....+
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHH
Confidence 3211 011 0 1 0 012222222221111 123445667766654 3457778
Q ss_pred HHHHHHhhHhcCCHHHHH-HHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC----
Q 038516 457 CGSLVDMYAKNGDLRAAE-SIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL---------RPD---- 519 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~---- 519 (708)
|-..+..+...|+.++|. ++|++.. +.+...|-..+....+.|++++|.++|++++.... .|+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~ 425 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA 425 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence 888888888899999996 9998874 45667788889999999999999999999987410 142
Q ss_pred --------hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC-CHHHHHHHHHhCC-CCCCCHH
Q 038516 520 --------EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG-LLDEAENLIAESP-YSEIRIE 589 (708)
Q Consensus 520 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~~~~~ 589 (708)
...|...+....+.|..+.|..+|.++.+....+....|...+..-.+.| +.+.|.++|+.+. .-+.+..
T Consensus 426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~ 505 (679)
T 4e6h_A 426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence 23577777777788999999999999987511123444544444444554 5899999998872 2224677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE---DGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
.|...+......|+.+.|..+|++++...|+ ....|......-...|+.+.+..+.+++.+.-+
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888899999999999999998884 446688888888889999999999999876543
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=4.1e-12 Score=131.06 Aligned_cols=269 Identities=14% Similarity=0.030 Sum_probs=171.8
Q ss_pred HHHHHHHHHcCCCCccchHHHHHHHHHHCCCCch----hHHhHHHHHHHhcCCChhHHHHHhhcCCC---------CEee
Q 038516 320 TFAAIISATSALPASAYGKPLHALVIKTGYDSSV----FVGTTLLNMYFKNGDAESPQKVFMLIAEK---------DIVL 386 (708)
Q Consensus 320 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 386 (708)
.+..+...+...|+++.|...++.+++.+ +.+. .++..+...|...|++++|...+++..+. ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34445556677777777777777777764 2222 35566666666667766666666543221 1223
Q ss_pred ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-CCchhHHHHHHHhhH
Q 038516 387 WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGH-GVEMSVCGSLVDMYA 465 (708)
Q Consensus 387 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 465 (708)
+..+...|...|++++|...+++..+.. ...+- +.....+..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 4444444444555555555444433210 00010 112334555666666
Q ss_pred hcCC-----------------HHHHHHHHhhCCC---------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C
Q 038516 466 KNGD-----------------LRAAESIFSQVLH---------PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR-P 518 (708)
Q Consensus 466 ~~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p 518 (708)
..|+ +++|.+.+++... ....++..+...|...|++++|+..+++..+.... +
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 6666 6666666655421 12346777888888999999999999888763110 1
Q ss_pred C----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCC-cChHHHHHHHHHHHhcCCHHHHHHHHHhCC----C--
Q 038516 519 D----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLI-PGHKHYSCMVSLLSRAGLLDEAENLIAESP----Y-- 583 (708)
Q Consensus 519 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-- 583 (708)
+ ...+..+...+...|++++|...+++..+. +.. .....+..++..|...|++++|...++++. .
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 2 125777788899999999999999888764 111 124677888999999999999999998861 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 584 -SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 584 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
.......+..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 1012446778888899999999999999999988764
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=4.3e-11 Score=107.72 Aligned_cols=161 Identities=18% Similarity=0.120 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516 489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA 568 (708)
Q Consensus 489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 568 (708)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 333444444444444444444444321 1133334444444555555555555555544421 11244555566666666
Q ss_pred CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516 569 GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 569 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
|++++|.+.++++ ...+.+...+..++..+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++
T Consensus 90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665 122245677777777888888888888888888888888888888888888888888888888887
Q ss_pred HhcC
Q 038516 648 MKGS 651 (708)
Q Consensus 648 ~~~~ 651 (708)
+.+.
T Consensus 170 ~~~~ 173 (186)
T 3as5_A 170 ANEL 173 (186)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.1e-10 Score=114.74 Aligned_cols=217 Identities=10% Similarity=-0.006 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhHCCCccCHHHHHHHHHHHhC-------cccH-------HHHHHHHHHHHHhCCCCchhHHHHHHHhhHh
Q 038516 401 ECAIKLFCKMCREGLKCDNFALSGALSACAD-------LAIL-------KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK 466 (708)
Q Consensus 401 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 466 (708)
++|..+|++..... +-+...|..+...+.. .|++ ++|..+++...+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666665531 1223334434333321 2332 4555555544442112233344445555555
Q ss_pred cCCHHHHHHHHhhCC--CC-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-hccCcHHHHHH
Q 038516 467 NGDLRAAESIFSQVL--HP-DLK-CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC-SHSGLVERGKI 541 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~ 541 (708)
.|++++|..+|++.+ .| +.. .|..++..+.+.|++++|..+|+++.+.. +++...|....... ...|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555442 12 122 45555555555555555555555555431 11222222211111 11355555555
Q ss_pred HHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038516 542 LWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPY---SEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVL 615 (708)
Q Consensus 542 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 615 (708)
+|++..+. .| +...|..++..+.+.|++++|..+|+++.. .+| ...+|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55554442 12 234444444455555555555555544411 011 23444444444444555555555555555
Q ss_pred hcCCCC
Q 038516 616 RLDPED 621 (708)
Q Consensus 616 ~~~p~~ 621 (708)
+..|++
T Consensus 269 ~~~p~~ 274 (308)
T 2ond_A 269 TAFREE 274 (308)
T ss_dssp HHTTTT
T ss_pred HHcccc
Confidence 555543
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.5e-12 Score=125.84 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=116.4
Q ss_pred hhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 038516 454 MSVCGSLVDMYAKNGDLRAAESIFSQVLH-----------PDLKCWNALLGGYSHYGMAEEAFMVFEVILEH------GL 516 (708)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 516 (708)
...+..+...|...|++++|...|++... ....++..+...|...|++++|...++++.+. +-
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445555556666666666666555421 12345666677777777777777777777653 11
Q ss_pred CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC------CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----
Q 038516 517 RPD-EITFLSLLSACSHSGLVERGKILWNQMKEH------SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPY----- 583 (708)
Q Consensus 517 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 583 (708)
.|+ ...+..+...+...|++++|.++++++.+. +..|. ...+..++..|...|++++|.+.++++..
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 222 334666666777888888888888777653 11232 45677777888888888888887766521
Q ss_pred ----CCC-CHHH------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 584 ----SEI-RIEL------WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 584 ----~~~-~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
..+ .... +......+...+.+.++...++++....|..+.++..++.+|...|++++|.+.+++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 101 1111 222222333455666677778888888888888899999999999999999999987754
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=2.6e-11 Score=123.60 Aligned_cols=194 Identities=11% Similarity=0.087 Sum_probs=113.3
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCC-----CCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh----
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVL-----HPD-----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGL-RPDE---- 520 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~---- 520 (708)
++..+...|...|++++|...+.+.. .++ ..+++.+...|...|++++|+..+++..+... .++.
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 33444445555555555555554432 111 23556666667777777777777766664210 0111
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHC----CC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhCC----CC-CC-CHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEH----SL-IPGHKHYSCMVSLLSRAGLLDEAENLIAESP----YS-EI-RIE 589 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~-~~~ 589 (708)
.++..+...|...|++++|.+.+++..+. +. +....++..++..|.+.|++++|...++++. .. .+ ...
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 24556666777777777777777776652 22 2235566677777777777777777776651 10 01 112
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 590 LWRTLLSTCVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 590 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+..+...+...|+ .++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 24455556666777 66666666655 33344455677788888888888888888877644
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=1.7e-11 Score=125.06 Aligned_cols=293 Identities=9% Similarity=-0.038 Sum_probs=211.6
Q ss_pred HcCCCCccchHHHHHHHHHHC--CCCc--hhHHhHHHHHHH--hcCCChhHH-----------HHHhhcCCC--CEeee-
Q 038516 328 TSALPASAYGKPLHALVIKTG--YDSS--VFVGTTLLNMYF--KNGDAESPQ-----------KVFMLIAEK--DIVLW- 387 (708)
Q Consensus 328 ~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~~--~~g~~~~A~-----------~~~~~~~~~--~~~~~- 387 (708)
+.+.++++.|..+++++.+.- +..+ ...|-.++..-. -.+.++.+. +.++.+... +...+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 467899999999999987643 2233 333344433211 223333333 555554321 11111
Q ss_pred -----hhhHHHHhcCCChHHHHHHHHHHhHC----CCcc-CHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--CCC----
Q 038516 388 -----TEMIIGHSRMGDGECAIKLFCKMCRE----GLKC-DNFALSGALSACADLAILKQGEMIHSQAEKT--GHG---- 451 (708)
Q Consensus 388 -----~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~---- 451 (708)
......+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+. ...
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 12456678899999999999998764 2122 2356777888889999999999999887753 111
Q ss_pred CchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 038516 452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILEH----GLRP 518 (708)
Q Consensus 452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p 518 (708)
....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1245778889999999999999999988742 22 247888999999999999999999999872 2224
Q ss_pred C-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCCHHH
Q 038516 519 D-EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPGHKHYSCMVSLLSRAGL---LDEAENLIAESPYSEIRIEL 590 (708)
Q Consensus 519 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~ 590 (708)
+ ..++..+...+...|++++|...+++..+. +.......+..+...+...|+ +++|..++++....+.....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3 456788888999999999999999998764 222223346778899999999 99999999998655334567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
+..++..|...|++++|...+++++++...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999886543
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=3.6e-10 Score=111.08 Aligned_cols=215 Identities=11% Similarity=0.108 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHhhH-------hcCCH-------HHHHHHHhhCC---CC-ChHHHHHHHHHHHh
Q 038516 436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYA-------KNGDL-------RAAESIFSQVL---HP-DLKCWNALLGGYSH 497 (708)
Q Consensus 436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~---~~-~~~~~~~li~~~~~ 497 (708)
++|..+++.+.... +.++..|..++..+. +.|++ ++|..+|++.+ .| +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777653 456677777777665 35775 89999998764 23 56689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCh-H-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH-hcCCHHHH
Q 038516 498 YGMAEEAFMVFEVILEHGLRPDE-I-TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS-RAGLLDEA 574 (708)
Q Consensus 498 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 574 (708)
.|++++|..+|+++++ +.|+. . .|..+...+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998 46653 3 78888888899999999999999998742 223455544443322 37999999
Q ss_pred HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL---DPE-DGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
..+|+++ ...|.+...|..++..+...|+.++|..+++++++. .|+ ....|..++..+...|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887 222246888999999999999999999999999995 554 66788899999999999999999999887
Q ss_pred cCCCc
Q 038516 650 GSMLG 654 (708)
Q Consensus 650 ~~~~~ 654 (708)
+..+.
T Consensus 269 ~~~p~ 273 (308)
T 2ond_A 269 TAFRE 273 (308)
T ss_dssp HHTTT
T ss_pred HHccc
Confidence 75543
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=1.5e-10 Score=108.35 Aligned_cols=205 Identities=10% Similarity=0.061 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC-ChHHHHHHHHH
Q 038516 418 DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP-DLKCWNALLGG 494 (708)
Q Consensus 418 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~ 494 (708)
|+..+......+...|++++|...+....+...+++...+..+..++...|++++|+..|++.. .| +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4456666666677777888888877777776543555555567777777777777777777664 23 45567777777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC---hHHHHHHHH
Q 038516 495 YSHYGMAEEAFMVFEVILEHGLRPD-E-------ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG---HKHYSCMVS 563 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 563 (708)
|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|++.|+++.+ +.|+ ...+..++.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 77777777777777777774 443 3 2355555566777777777777777775 3444 455666666
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 564 LLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
+|...|+. .++++. ....+...+.... ....+++++|...++++++++|+++.+...++.+..
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 66555432 222221 0111222232222 233456799999999999999999988888776643
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.9e-10 Score=110.12 Aligned_cols=209 Identities=11% Similarity=0.019 Sum_probs=129.6
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHH
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P-D---LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD----EIT 522 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~ 522 (708)
+...+-.+...+.+.|++++|+..|+.+.. | + ...+..+..+|.+.|++++|+..|++.++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 344444555555566666666666665531 2 2 345555555666666666666666666553 221 122
Q ss_pred HHHHHHHHhc--------cCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH
Q 038516 523 FLSLLSACSH--------SGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT 593 (708)
Q Consensus 523 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 593 (708)
+..+..++.. .|++++|...|+++.+. .|+. .....+.......+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~----------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL----------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH----------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH----------------HHHHHH
Confidence 3334444444 55566666655555542 2221 1111111100000000 112356
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CCchHHHHHHHHHhcCCCccCCcee
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAAT----------GRWDCVAKMRRKMKGSMLGKEPGLS 660 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~~~~~~~ 660 (708)
++..+...|++++|+..++++++..|+++ .++..++.+|... |++++|...++++.+..+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p------- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP------- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence 77888999999999999999999999954 4788999999977 999999999999876533
Q ss_pred EEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhccc
Q 038516 661 WIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFG 704 (708)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 704 (708)
.+|...+....+.++..++++.+.++..
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3778889999999999999988766543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=2.1e-09 Score=108.99 Aligned_cols=258 Identities=14% Similarity=0.008 Sum_probs=169.6
Q ss_pred HHhcCCChHHHHHHHHHHhHCCCccCHH----HHHHHHHHHhCcccHHHHHHHHHHHHHhC--C-CC--chhHHHHHHHh
Q 038516 393 GHSRMGDGECAIKLFCKMCREGLKCDNF----ALSGALSACADLAILKQGEMIHSQAEKTG--H-GV--EMSVCGSLVDM 463 (708)
Q Consensus 393 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~ 463 (708)
.+...|++++|...+++........+.. .+..+...+...|++++|...+....... . .+ ....+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445666777777766665543222221 33344455566777777777776655321 1 11 12234567777
Q ss_pred hHhcCCHHHHHHHHhhCCC----------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--ChHHHHHHHH
Q 038516 464 YAKNGDLRAAESIFSQVLH----------P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR--P--DEITFLSLLS 528 (708)
Q Consensus 464 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll~ 528 (708)
+...|++++|...+++... | ....+..+...+...|++++|...+++....... | ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 8888888888888876631 1 1335666778888999999999999988864221 1 1234666777
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCc-C-hHHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCC-----HHHHHHHHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIP-G-HKHYS----CMVSLLSRAGLLDEAENLIAESPYSEIR-----IELWRTLLST 597 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~ 597 (708)
.+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.....+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 8888999999999999886531111 1 11111 2334577899999999999888332121 2345667778
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDG------TTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
+...|++++|...++++++..+... ..+..++.+|...|++++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8889999999999999887644322 3567788999999999999998887754
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.3e-11 Score=121.82 Aligned_cols=200 Identities=15% Similarity=0.083 Sum_probs=120.0
Q ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----------
Q 038516 421 ALSGALSACADLAILKQGEMIHSQAEKT------GH-GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH----------- 482 (708)
Q Consensus 421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 482 (708)
.+..+...+...|++++|...+....+. +- +.....+..+...|...|++++|...|++...
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4444445555555555555555554432 11 22345566667777777777777777766531
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC------
Q 038516 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEH------GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH------ 549 (708)
Q Consensus 483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------ 549 (708)
.....+..+...+...|++++|+.+++++.+. +-.|+ ..++..+...+...|++++|.+.++++.+.
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12345777778888888888888888888764 21332 345667777888889999998888888752
Q ss_pred -CCCcC-------hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 550 -SLIPG-------HKHYSCMVSLLSRAGLLDEAENLIAESPYSE-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 550 -~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
...+. ...+..+...+...+.+.+|...++...... ....++..++..|...|++++|...+++++++.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11111 1223333444555666667777777764332 34667888999999999999999999999998775
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=4.2e-10 Score=101.11 Aligned_cols=169 Identities=14% Similarity=0.004 Sum_probs=143.7
Q ss_pred hhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 038516 454 MSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC 530 (708)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 530 (708)
...+..+...+...|++++|...|+++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34556777888899999999999999863 467889999999999999999999999999862 33567788888899
Q ss_pred hccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038516 531 SHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQ 609 (708)
Q Consensus 531 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 609 (708)
...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++ ...+.+...+..++..+...|+.++|..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999874 2235677888999999999999999999887 2233468889999999999999999999
Q ss_pred HHHHHHhcCCCCcch
Q 038516 610 AAEQVLRLDPEDGTT 624 (708)
Q Consensus 610 ~~~~~~~~~p~~~~~ 624 (708)
.++++++..|++...
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999987653
No 81
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.24 E-value=7.6e-11 Score=117.54 Aligned_cols=227 Identities=12% Similarity=0.023 Sum_probs=179.2
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHhhHhcCCHHHHHHHHhhCCC---------CChHHHHH
Q 038516 423 SGALSACADLAILKQGEMIHSQAEKTGHGVE---MSVCGSLVDMYAKNGDLRAAESIFSQVLH---------PDLKCWNA 490 (708)
Q Consensus 423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 490 (708)
......+...|++++|...++.+.+...... ...+..+...+...|++++|.+.+++... ....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3344557789999999999999988743221 46778899999999999999999987631 12557888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCc--------------------HHHHHHHHHH
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGL-RPD----EITFLSLLSACSHSGL--------------------VERGKILWNQ 545 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~ 545 (708)
+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 89999999999999999999876311 122 2367777788999999 9999999988
Q ss_pred hhHC----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 546 MKEH----SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 546 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
..+. +..|. ...+..++..+...|++++|...++++ +.. ++ ...+..++..+...|++++|...++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7653 22222 456888899999999999999999886 111 12 3367888888999999999999999
Q ss_pred HHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 613 QVLRLDPED------GTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 613 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
+++++.|+. ...+..++.+|...|++++|...++++.+
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999887665 55788999999999999999999998765
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=3.1e-10 Score=115.34 Aligned_cols=221 Identities=16% Similarity=0.107 Sum_probs=151.0
Q ss_pred HhCcccHHHHHHHHHHHHHhC--CC---CchhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCC-----hHHHHHHHH
Q 038516 429 CADLAILKQGEMIHSQAEKTG--HG---VEMSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPD-----LKCWNALLG 493 (708)
Q Consensus 429 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~ 493 (708)
+...|++++|...+....+.. .. ....++..+...|...|+++.|...+.+.. .++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 345566666666666554321 11 123456667777888888888877776653 111 346778888
Q ss_pred HHHhcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcChHHHHHHHHH
Q 038516 494 GYSHYGMAEEAFMVFEVILEHGL-RPD----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPGHKHYSCMVSL 564 (708)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~ 564 (708)
.|...|++++|.+.|++..+..- .++ ..++..+...+...|++++|.+.+++..+. +.+....++..++..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 88999999999999888876310 112 235667777888999999999999988762 222236678888999
Q ss_pred HHhcCCHHHHHHHHHhC----CC-CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 565 LSRAGLLDEAENLIAES----PY-SEIR-IELWRTLLSTCVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~----~~-~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
+.+.|++++|...++++ .. ..+. ...+..+...+...++ +++|...+++. ...|.....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 99999999999998886 21 1122 3345555556667777 77777777652 23344455677899999999
Q ss_pred CCchHHHHHHHHHhc
Q 038516 636 GRWDCVAKMRRKMKG 650 (708)
Q Consensus 636 g~~~eA~~~~~~~~~ 650 (708)
|++++|.+.+++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999887753
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.18 E-value=1.3e-09 Score=110.80 Aligned_cols=226 Identities=10% Similarity=-0.028 Sum_probs=165.6
Q ss_pred HHHHhcCCChHHHHHHHHHHhHCCC-ccC----HHHHHHHHHHHhCcccHHHHHHHHHHHHHh--CC---C-CchhHHHH
Q 038516 391 IIGHSRMGDGECAIKLFCKMCREGL-KCD----NFALSGALSACADLAILKQGEMIHSQAEKT--GH---G-VEMSVCGS 459 (708)
Q Consensus 391 i~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~~ 459 (708)
...+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+. .. . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445667778888887777664311 122 235566666777788888888877766542 11 1 12456778
Q ss_pred HHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 038516 460 LVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILE-----HGLRPDEITFLS 525 (708)
Q Consensus 460 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~ 525 (708)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 88889999999999998887642 22 34678889999999999999999999987 32 222556777
Q ss_pred HHHHHhccCcHHHHHHHHHHhhHC----CCCcChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 038516 526 LLSACSHSGLVERGKILWNQMKEH----SLIPGHKHYSCMVSLLSRAGL---LDEAENLIAESPYSEIRIELWRTLLSTC 598 (708)
Q Consensus 526 ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 598 (708)
+...+.+.|++++|..++++..+. +.......+..+...+...|+ +++|..++++....+.....+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 888999999999999999998874 122224456777778888888 8999999998754423355677788889
Q ss_pred HhcCCHHHHHHHHHHHHhc
Q 038516 599 VAKRNSRMVIQAAEQVLRL 617 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~ 617 (708)
...|++++|...++++++.
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998865
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=3.7e-09 Score=100.33 Aligned_cols=177 Identities=9% Similarity=-0.048 Sum_probs=124.6
Q ss_pred HHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516 473 AESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKE 548 (708)
Q Consensus 473 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 548 (708)
|+..|++.. .++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666654 3455556677788888888888888888887654322 345566777788888888888888888876
Q ss_pred CCCCc-----ChHHHHHHHHH--HHhcC--CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 038516 549 HSLIP-----GHKHYSCMVSL--LSRAG--LLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL-- 617 (708)
Q Consensus 549 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 617 (708)
..| +..+...|+.+ ....| ++.+|..+|+++....|+......++.++...|++++|+..++.+.++
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 455 24444445444 33334 888888888888655565333344444777888888888888877765
Q ss_pred --------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 618 --------DPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 618 --------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+|+++.++..++.+....|+ +|.++++++++..+
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 48888888777777777887 88888888877543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=3.3e-10 Score=123.14 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=120.3
Q ss_pred CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHH
Q 038516 517 RPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRT 593 (708)
Q Consensus 517 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~ 593 (708)
.|+ ...++.|...+.+.|++++|++.|++.++ +.|+ ...+..|+.+|.+.|++++|++.++++ ...+.+...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 454 56788899999999999999999999998 5565 778999999999999999999999998 334346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++.++...|++++|++.++++++++|+++.+|..||.+|...|++++|++.++++.+.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999998764
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=5e-10 Score=108.45 Aligned_cols=221 Identities=18% Similarity=0.151 Sum_probs=151.2
Q ss_pred hCcccHHHHHHHHHHHHH-------hCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--------C---CChHHHHHH
Q 038516 430 ADLAILKQGEMIHSQAEK-------TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--------H---PDLKCWNAL 491 (708)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l 491 (708)
...|++++|...++...+ ...+....++..+...|...|++++|...|++.. . ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666665543 1223356778888999999999999999998764 1 134578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC------CCCcC-hHH
Q 038516 492 LGGYSHYGMAEEAFMVFEVILEH------GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH------SLIPG-HKH 557 (708)
Q Consensus 492 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~ 557 (708)
...|...|++++|...++++.+. .-.|+ ...+..+...+...|++++|..+++++.+. +..|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998874 11232 455777788899999999999999988764 11332 567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAESP----------YSEIRIELWRTLLSTCVAKR------NSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~ 621 (708)
+..++..|...|++++|..+++++. ..+.....|..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999987761 11122334444444443322 2334444444333445666
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 622 GTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 622 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
...+..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998765
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=4.8e-10 Score=109.10 Aligned_cols=201 Identities=11% Similarity=0.012 Sum_probs=145.2
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-------C--ChHHHHHHHHHHHhcCChHHH
Q 038516 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-------P--DLKCWNALLGGYSHYGMAEEA 504 (708)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A 504 (708)
++++|...+... ...|...|++++|...|.+... + ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777655 3457788999999988877631 1 146788999999999999999
Q ss_pred HHHHHHHHHCCCC-CC----hHHHHHHHHHHhcc-CcHHHHHHHHHHhhHC----CCCcC-hHHHHHHHHHHHhcCCHHH
Q 038516 505 FMVFEVILEHGLR-PD----EITFLSLLSACSHS-GLVERGKILWNQMKEH----SLIPG-HKHYSCMVSLLSRAGLLDE 573 (708)
Q Consensus 505 ~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~ 573 (708)
+..+++.++.... .+ ..++..+...|... |++++|+..|++..+. +..+. ..++..++..|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999998863111 11 34677788889886 9999999999998863 11111 3568889999999999999
Q ss_pred HHHHHHhCCCCC---CCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCCc
Q 038516 574 AENLIAESPYSE---IRI-----ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-----HILLSNLYA--ATGRW 638 (708)
Q Consensus 574 A~~~~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 638 (708)
|...++++.... +.. ..+..++.++...|+++.|...++++++++|+.... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999998872111 221 256777788889999999999999999999987654 345566664 45778
Q ss_pred hHHHHHHHHHh
Q 038516 639 DCVAKMRRKMK 649 (708)
Q Consensus 639 ~eA~~~~~~~~ 649 (708)
++|...++++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 88888886553
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=1.5e-10 Score=99.74 Aligned_cols=121 Identities=16% Similarity=0.035 Sum_probs=80.2
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR 605 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 605 (708)
..+...|++++|++.++.... ..|+ ...+..++..|.+.|++++|++.++++ ...|.++..|..++.++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 345556677777777766654 3333 334455677777777777777777776 233245677777777777777777
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHhc
Q 038516 606 MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM-RRKMKG 650 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~-~~~~~~ 650 (708)
+|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777766554 455554
No 89
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=7.3e-09 Score=95.18 Aligned_cols=172 Identities=10% Similarity=-0.011 Sum_probs=141.0
Q ss_pred HHHHHhhCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC----cHHHHHHHHHHhh
Q 038516 473 AESIFSQVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG----LVERGKILWNQMK 547 (708)
Q Consensus 473 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~ 547 (708)
|.+.|++.. ..++..+..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|.++|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444443 3567788888888888999999999999998865 56667777777777 6 8999999999998
Q ss_pred HCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 038516 548 EHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIR---IELWRTLLSTCVA----KRNSRMVIQAAEQVLR 616 (708)
Q Consensus 548 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 616 (708)
+.| +...+..|...|.. .+++++|.++++++....+. +..+..|...|.. .+|.++|...++++.+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 754 45667778888887 88999999999998666453 7888899988888 7899999999999999
Q ss_pred cCCCCcchHHHHHHHHHhc-C-----CchHHHHHHHHHhcCC
Q 038516 617 LDPEDGTTHILLSNLYAAT-G-----RWDCVAKMRRKMKGSM 652 (708)
Q Consensus 617 ~~p~~~~~~~~l~~~~~~~-g-----~~~eA~~~~~~~~~~~ 652 (708)
+ |+++..+..|+.+|... | ++++|...+++..+.|
T Consensus 158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9 77788899999999864 3 8999999999988765
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=8.1e-11 Score=101.49 Aligned_cols=140 Identities=11% Similarity=-0.032 Sum_probs=100.3
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCH
Q 038516 494 GYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 494 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 571 (708)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|++.++ +.|+ ...|..++.+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 344456666666666665542 333 23345556667777777777777777766 3443 56677778888888888
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516 572 DEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQ-AAEQVLRLDPEDGTTHILLSNLYAATGR 637 (708)
Q Consensus 572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 637 (708)
++|...++++ ...|.++..|..++..+...|+.++|.. .++++++++|+++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888776 3333467888888888999998876555 5699999999999999999999998886
No 91
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=2.3e-09 Score=103.79 Aligned_cols=177 Identities=12% Similarity=-0.007 Sum_probs=144.6
Q ss_pred CHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 038516 469 DLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMK 547 (708)
Q Consensus 469 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 547 (708)
..+.....+....+.+...+..+...+.+.|++++|...|+++.+. .| +...+..+...+...|++++|...++++.
T Consensus 101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3445556666666666777888888999999999999999999985 66 45667888889999999999999999987
Q ss_pred HCCCCcChHHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cc
Q 038516 548 EHSLIPGHKHYSC-MVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED--GT 623 (708)
Q Consensus 548 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 623 (708)
. ..|+...... ....+.+.++.++|...++++ ...|.+...+..+...+...|++++|...++++++.+|++ ..
T Consensus 179 ~--~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 179 L--QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G--GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h--hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 6 4455443332 333466788888899888887 3343578899999999999999999999999999999998 88
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 624 THILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
++..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999998887654
No 92
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.09 E-value=4.7e-09 Score=97.64 Aligned_cols=179 Identities=11% Similarity=0.052 Sum_probs=111.6
Q ss_pred hHHHHHHHhhHhcCCHHHHHHHHhhCC--CCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----HHH
Q 038516 455 SVCGSLVDMYAKNGDLRAAESIFSQVL--HPD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI----TFL 524 (708)
Q Consensus 455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~ 524 (708)
..+-.+...+.+.|++++|+..|+++. .|+ ...+..+..+|.+.|++++|+..|+++.+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 344455666777788888888887764 232 245666777777788888888888887774 44322 233
Q ss_pred HHHHHHhc------------------cCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 038516 525 SLLSACSH------------------SGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPYSE 585 (708)
Q Consensus 525 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 585 (708)
.+..++.. .|++++|...|+++++. .|+. ..+..+.... ......
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----~~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----FLKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----HHHHHH----------
Confidence 33333332 34445555555554442 2221 1111100000 000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
......++..+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...++
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113456678889999999999999999999986 5688999999999999999999999887654
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=1.2e-09 Score=106.28 Aligned_cols=243 Identities=11% Similarity=-0.012 Sum_probs=151.4
Q ss_pred cchHHHHHHHHHHCCCCchhHHhHHHHHHHhc--C-CChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHh
Q 038516 335 AYGKPLHALVIKTGYDSSVFVGTTLLNMYFKN--G-DAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMC 411 (708)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 411 (708)
.+|..++.+..+.- +++...+ .+.+. + ++++|...|... ...|...|++++|...|++..
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 35666666666653 3222222 22232 2 477777776553 455667778888777777664
Q ss_pred HC----CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----
Q 038516 412 RE----GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH----- 482 (708)
Q Consensus 412 ~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 482 (708)
.. |-.++ ...+++.+..+|.+.|++++|+..|++.+.
T Consensus 65 ~~~~~~~~~~~----------------------------------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 65 DYQKKAGNEDE----------------------------------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHTTCHHH----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHH----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 32 11111 123444555555555566555555554421
Q ss_pred CC----hHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516 483 PD----LKCWNALLGGYSHY-GMAEEAFMVFEVILEHGLRPD-------EITFLSLLSACSHSGLVERGKILWNQMKEHS 550 (708)
Q Consensus 483 ~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 550 (708)
.+ ..+|+.+...|... |++++|+..|++..+. .|+ ..++..+...+...|++++|+..|++..+..
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 11 34677788888885 9999999999988873 221 2457777888899999999999999988752
Q ss_pred CCc-Ch-----HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 038516 551 LIP-GH-----KHYSCMVSLLSRAGLLDEAENLIAESPYSEIR------IELWRTLLSTCV--AKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 551 ~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 616 (708)
... .. ..|..++.++...|++++|...+++.....|+ ...+..++.++. ..+++++|+..++++..
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 221 11 25677888889999999999999987332232 113444555554 35678999999988888
Q ss_pred cCCCCcchHHHHHH
Q 038516 617 LDPEDGTTHILLSN 630 (708)
Q Consensus 617 ~~p~~~~~~~~l~~ 630 (708)
++|.....+..+-.
T Consensus 269 l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 269 LDKWKITILNKIKE 282 (292)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 88876554444433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=2.6e-09 Score=102.06 Aligned_cols=204 Identities=10% Similarity=0.036 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC--chhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC---C-hHHHH
Q 038516 418 DNFALSGALSACADLAILKQGEMIHSQAEKTGHGV--EMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP---D-LKCWN 489 (708)
Q Consensus 418 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~-~~~~~ 489 (708)
+...+......+...|++++|...++.+.+..... ....+..+..+|.+.|++++|...|+... .| . ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 45566667777889999999999999998764211 16677889999999999999999999885 23 2 45677
Q ss_pred HHHHHHHh--------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHH
Q 038516 490 ALLGGYSH--------YGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSC 560 (708)
Q Consensus 490 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 560 (708)
.+..++.. .|++++|+..|+++++. .|+.. ....+.. +..+... -...+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 78888888 99999999999999985 56532 2221111 1111100 0122556
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcch--
Q 038516 561 MVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAK----------RNSRMVIQAAEQVLRLDPEDGTT-- 624 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~-- 624 (708)
++..|.+.|++++|...++++ |..+.....+..++.++... |++++|...++++++..|+++.+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 788899999999999999887 33312356777777777765 89999999999999999999743
Q ss_pred -HHHHHHHHHhcCCchHH
Q 038516 625 -HILLSNLYAATGRWDCV 641 (708)
Q Consensus 625 -~~~l~~~~~~~g~~~eA 641 (708)
...+..++...|+++++
T Consensus 234 a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 234 AEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 44666666666655543
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=1.8e-09 Score=118.12 Aligned_cols=168 Identities=9% Similarity=-0.043 Sum_probs=89.3
Q ss_pred HhcCCHHHHHHHHhhCC-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhc
Q 038516 465 AKNGDLRAAESIFSQVL-----------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSH 532 (708)
Q Consensus 465 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 532 (708)
...|++++|++.|++.. +.+...|..+...+...|++++|+..|+++.+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 34455555555555443 233445555555555666666666666665553 33 33445555555555
Q ss_pred cCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516 533 SGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQA 610 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 610 (708)
.|++++|.+.|+++.+ +.| +...+..++.+|.+.|++++ ++.++++ ...+.+...|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665554 233 24445555556666666665 5555554 22223455555555556666666666666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAATGR 637 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 637 (708)
++++++++|++..++..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666665556666655544443
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.06 E-value=1.3e-09 Score=90.49 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=83.0
Q ss_pred CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 551 LIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 551 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
+.|+ ...+...+..|.+.|++++|++.|+++ ...|.+...|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 456777888888888888888888887 33335678888888888889999999999999999999998889999
Q ss_pred HHHHHhcCCchHHHHHHHHHhcC
Q 038516 629 SNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 629 ~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
|.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998888763
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.04 E-value=1.1e-09 Score=93.64 Aligned_cols=103 Identities=10% Similarity=-0.048 Sum_probs=92.1
Q ss_pred CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516 550 SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL 627 (708)
Q Consensus 550 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 627 (708)
.+.|+ ...+..++..+.+.|++++|...|+++ ...|.++..|..++.++...|++++|+..++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35564 567888899999999999999999998 3343578999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 628 LSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 628 l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
+|.+|...|++++|...++++.+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999987753
No 98
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.02 E-value=1.1e-09 Score=93.94 Aligned_cols=107 Identities=7% Similarity=-0.014 Sum_probs=91.9
Q ss_pred HHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 543 WNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 543 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
|+++.+ +.|+ ...+..++..+.+.|++++|...++++ ...+.+...|..++.++...|++++|+..++++++++|+
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 444443 4453 566777889999999999999999987 334357889999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++.++..++.+|...|++++|...+++..+.
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988764
No 99
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=5.3e-08 Score=98.56 Aligned_cols=222 Identities=9% Similarity=-0.009 Sum_probs=165.1
Q ss_pred HHhCcccHHHHHHHHHHHHHhCCCCch----hHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CCh----HHHHHHHHH
Q 038516 428 ACADLAILKQGEMIHSQAEKTGHGVEM----SVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDL----KCWNALLGG 494 (708)
Q Consensus 428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~ 494 (708)
.+...|++++|...++......-..+. ..++.+...+...|++++|...+++... .+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455789999999999988775422222 2556777888899999999999987741 222 335677888
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCC--CC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCc--ChHHHHHHHH
Q 038516 495 YSHYGMAEEAFMVFEVILEH----GLR--PD-EITFLSLLSACSHSGLVERGKILWNQMKEH--SLIP--GHKHYSCMVS 563 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p--~~~~~~~l~~ 563 (708)
+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+. ...+ ....+..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999998763 211 32 234566777889999999999999998764 1112 2456778899
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHH
Q 038516 564 LLSRAGLLDEAENLIAES----PYSEIRIELWR-----TLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT----THILLSN 630 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~ 630 (708)
.+...|++++|...++++ +.. .....|. ..+..+...|+.++|...++++++..|.+.. .+..++.
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 999999999999999876 221 1112222 2234467899999999999999987775422 4678899
Q ss_pred HHHhcCCchHHHHHHHHHhc
Q 038516 631 LYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 631 ~~~~~g~~~eA~~~~~~~~~ 650 (708)
++...|++++|...++++..
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999988754
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.00 E-value=5.8e-09 Score=87.79 Aligned_cols=94 Identities=19% Similarity=0.243 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
.+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|++...+..++.+|...
T Consensus 37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 116 (136)
T 2fo7_A 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 3444445555555555555555444 111134556666666677777777777777777777777777777777778888
Q ss_pred CCchHHHHHHHHHhc
Q 038516 636 GRWDCVAKMRRKMKG 650 (708)
Q Consensus 636 g~~~eA~~~~~~~~~ 650 (708)
|++++|.+.++++..
T Consensus 117 ~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 117 GDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 888888777777654
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=1.9e-08 Score=95.51 Aligned_cols=195 Identities=10% Similarity=0.006 Sum_probs=141.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038516 438 GEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEVIL 512 (708)
Q Consensus 438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 512 (708)
+...++.....+ .++...+..+..++...|++++|++++.+.+. .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 34445555778888899999999999988743 245677788899999999999999999998
Q ss_pred HCCCCC-----ChHHHHHHHHHH--hc--cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038516 513 EHGLRP-----DEITFLSLLSAC--SH--SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY 583 (708)
Q Consensus 513 ~~g~~p-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 583 (708)
+. .| +..+...|..++ .. .+++++|..+|+++.+. .|+...-..+..++.+.|++++|++.++.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 84 77 356666666553 22 34899999999998763 35433333444589999999999999986522
Q ss_pred -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 584 -----------SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 584 -----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+.++.++..++......|+ .|.++++++.+.+|+++.+.. +.+....|+++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d-----------~~~k~~~Fd~~~~ 304 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH-----------HQEIDAKFDELVR 304 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH-----------HHHHHHHHHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHH
Confidence 23567777677666666787 899999999999999986543 4445555665544
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=3.3e-09 Score=94.31 Aligned_cols=156 Identities=12% Similarity=0.076 Sum_probs=96.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH-HHhc
Q 038516 491 LLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL-LSRA 568 (708)
Q Consensus 491 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 568 (708)
+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++++.+. .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 334444555555555555554442 23 2333444444555555555555555554432 2222222111111 1122
Q ss_pred CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHH
Q 038516 569 GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED--GTTHILLSNLYAATGRWDCVAKMR 645 (708)
Q Consensus 569 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~ 645 (708)
+...+|...++++ ...|.+...+..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223456666665 2232468889999999999999999999999999999986 558999999999999999999998
Q ss_pred HHHhc
Q 038516 646 RKMKG 650 (708)
Q Consensus 646 ~~~~~ 650 (708)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 103
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=5.3e-09 Score=101.12 Aligned_cols=215 Identities=15% Similarity=0.057 Sum_probs=137.2
Q ss_pred HHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHhhHhcCCHHHHHH
Q 038516 403 AIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT------GH-GVEMSVCGSLVDMYAKNGDLRAAES 475 (708)
Q Consensus 403 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 475 (708)
|++++++......+....++..+...+...|++++|...+..+.+. +- +....++..+...|...|++++|..
T Consensus 27 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 106 (283)
T 3edt_B 27 ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 106 (283)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 4444444433222233445666666677777777777777666543 22 2235567778888888888888888
Q ss_pred HHhhCCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHH
Q 038516 476 IFSQVLH-------P----DLKCWNALLGGYSHYGMAEEAFMVFEVILEH------GLRPD-EITFLSLLSACSHSGLVE 537 (708)
Q Consensus 476 ~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~ 537 (708)
.|.+... + ...++..+...|...|++++|...++++.+. +-.|+ ..++..+...+...|+++
T Consensus 107 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 186 (283)
T 3edt_B 107 LCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ 186 (283)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 8877631 1 2456788888899999999999999998874 11332 355777888899999999
Q ss_pred HHHHHHHHhhHC-------CCCcC-hHHHHHHHHHHHhcC------CHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcC
Q 038516 538 RGKILWNQMKEH-------SLIPG-HKHYSCMVSLLSRAG------LLDEAENLIAESPYSEI-RIELWRTLLSTCVAKR 602 (708)
Q Consensus 538 ~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 602 (708)
+|..+++++.+. ...+. ...+..+...+...+ .+.++...++......| ....+..++..+...|
T Consensus 187 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 266 (283)
T 3edt_B 187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG 266 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 999999988763 11222 233443444444333 34445555555543322 3556888889999999
Q ss_pred CHHHHHHHHHHHHhc
Q 038516 603 NSRMVIQAAEQVLRL 617 (708)
Q Consensus 603 ~~~~a~~~~~~~~~~ 617 (708)
++++|...++++++.
T Consensus 267 ~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 267 KLEAAHTLEDCASRN 281 (283)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999875
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.97 E-value=1.2e-08 Score=93.45 Aligned_cols=122 Identities=7% Similarity=-0.013 Sum_probs=55.4
Q ss_pred HHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC-
Q 038516 526 LLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR- 602 (708)
Q Consensus 526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~- 602 (708)
+..++...|++++|+..|++..+ +.| +...+..++.+|...|++++|...++++ ...|.+...|..++..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 44455555555555555555554 223 2444555555555555555555555554 122223445555554443332
Q ss_pred -CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 603 -NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 603 -~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
+.+.+...++++....|.. ..+..++.++...|++++|+..++++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 138 QEKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2233333444433222211 1233445555555555555555555544
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=2.2e-08 Score=84.12 Aligned_cols=133 Identities=18% Similarity=0.222 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS 566 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 566 (708)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677788888888888888888888753 2355667777778888889999999888887642 224567778888899
Q ss_pred hcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516 567 RAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 567 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
..|++++|.+.++++. ..+.+...+..++..+...|++++|...++++++.+|++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999888872 222457788888888999999999999999999988863
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.94 E-value=1.4e-08 Score=93.06 Aligned_cols=155 Identities=10% Similarity=0.018 Sum_probs=113.3
Q ss_pred hhHhcCCHHHHHHHHhhCCC--C-ChHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHH
Q 038516 463 MYAKNGDLRAAESIFSQVLH--P-DLKCWNA----------------LLGGYSHYGMAEEAFMVFEVILEHGLRP-DEIT 522 (708)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~ 522 (708)
.+...|++++|+..|++... | +...|.. +..+|.+.|++++|+..|++.++. .| +...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHH
Confidence 34455666666666655532 2 2334444 888999999999999999999995 56 4667
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGL--LDEAENLIAESPYSEIRIELWRTLLSTCV 599 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 599 (708)
+..+..++...|++++|...|++..+ +.|+ ...+..++..|...|+ .+++...++.....+|....+...+.++.
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 88888899999999999999999998 4564 6788888888876664 44566667666433233334555566677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC
Q 038516 600 AKRNSRMVIQAAEQVLRLDPED 621 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~ 621 (708)
..|++++|+..+++++++.|++
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCCH
T ss_pred HccCHHHHHHHHHHHHHhCCCH
Confidence 7899999999999999999974
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=8.9e-09 Score=110.75 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=125.6
Q ss_pred cCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHH
Q 038516 467 NGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKIL 542 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 542 (708)
.|++++|.+.|++.. +.+...|..+...|...|++++|.+.+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999886 345788999999999999999999999999985 55 466788888899999999999999
Q ss_pred HHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 038516 543 WNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK---RNSRMVIQAAEQVLRL 617 (708)
Q Consensus 543 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 617 (708)
+++..+. .|+ ...+..++.+|.+.|++++|.+.++++ ...+.+...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 443 678889999999999999999999997 23334678899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 038516 618 DPEDGTTHILLS 629 (708)
Q Consensus 618 ~p~~~~~~~~l~ 629 (708)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999888777
No 108
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.92 E-value=1.1e-08 Score=87.13 Aligned_cols=101 Identities=10% Similarity=-0.021 Sum_probs=88.6
Q ss_pred CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 551 LIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 551 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
+.|+ ...+..++..+.+.|++++|...++++ ...|.+...|..++.++...|++++|+..++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4443 455667888899999999999999887 33335788899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhcC
Q 038516 629 SNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 629 ~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+.+|...|++++|.+.++++.+.
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=1.2e-08 Score=84.68 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=90.3
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHH
Q 038516 516 LRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWR 592 (708)
Q Consensus 516 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 592 (708)
+.|+ ...+......+.+.|++++|++.|++.++ +.| +...|..++.+|.+.|++++|+..++++ ...+.+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4454 23456666677778888888888887776 334 3667777888888888888888888887 33335688899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516 593 TLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY 632 (708)
Q Consensus 593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 632 (708)
.++.++...|++++|...++++++++|++..++..|+.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999888887653
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=2.6e-08 Score=96.42 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=111.4
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHH-
Q 038516 519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLS- 596 (708)
Q Consensus 519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~- 596 (708)
+...+..+...+...|++++|...|+++.+ ..|+ ...+..++..|.+.|++++|...++++....|+.........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 345566777788999999999999999987 4454 677888999999999999999999999665576655444443
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.+...++.+.|...++++++.+|+++.++..|+.+|...|++++|...++++.+.
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3667788888999999999999999999999999999999999999999998775
No 111
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.5e-08 Score=84.30 Aligned_cols=121 Identities=6% Similarity=-0.088 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
...+..++..+.+.|++++|...++++ ...+.+...|..++.++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 455777888899999999999999887 3333568899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHH
Q 038516 634 ATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNM 695 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 695 (708)
..|++++|...+++..+..+. ....|...++...+.+...++
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHHC
T ss_pred HHhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHhh
Confidence 999999999999988764211 012377788888877766553
No 112
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=5.3e-08 Score=89.61 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=53.7
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
+...|++++|...|++.. .|+...+..++..|.+.|++++|.+.++++ ...+.+...|..++..+...|++++|.
T Consensus 16 ~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 91 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 91 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHH
Confidence 334444444444444332 233344444444444444444444444443 111123444444444455555555555
Q ss_pred HHHHHHHhcCCCCc----------------chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 609 QAAEQVLRLDPEDG----------------TTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 609 ~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
..+++++++.|++. .++..++.+|...|++++|.+.++++.+
T Consensus 92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 92 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555444444 4455555555555555555555554443
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=1.7e-08 Score=89.72 Aligned_cols=145 Identities=8% Similarity=0.009 Sum_probs=105.1
Q ss_pred HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHH-HHhcCCH--H
Q 038516 530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLST-CVAKRNS--R 605 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~-~~~~~~~--~ 605 (708)
+...|++++|...+++..+.. +.+...+..++..|...|++++|...++++ ...+.+...+..++.. +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345677777777777776631 224567777888888888888888888776 2222467778888888 7788888 9
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHH
Q 038516 606 MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQ 685 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (708)
+|...++++++.+|+++.++..++.+|...|++++|...++++.+.... ++....+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~~~~~~~~ 155 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP-----------------------RINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-----------------------TSCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-----------------------CccHHHHH
Confidence 9999999999999999999999999999999999999999988765432 45566666
Q ss_pred HHHHHHHHHHHhh
Q 038516 686 AELHRLRGNMRKL 698 (708)
Q Consensus 686 ~~l~~l~~~~~~~ 698 (708)
..+.+.+......
T Consensus 156 ~~i~~~~~~~~~~ 168 (177)
T 2e2e_A 156 ESINMAKLLQRRS 168 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC
Confidence 6666655554443
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=7.6e-08 Score=94.24 Aligned_cols=218 Identities=11% Similarity=-0.034 Sum_probs=153.4
Q ss_pred CCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHH
Q 038516 397 MGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESI 476 (708)
Q Consensus 397 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 476 (708)
.|++++|.+++++..+... .. + +...++++.|...+... ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4677888888887665311 00 0 11146667666666543 4567788899998888
Q ss_pred HhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--hHHHHHHHHHHhccCcHHHHHHH
Q 038516 477 FSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGL---RPD--EITFLSLLSACSHSGLVERGKIL 542 (708)
Q Consensus 477 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~~ 542 (708)
|.+... .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 877631 12 45788888999999999999999999876311 121 2457777778888 999999999
Q ss_pred HHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 038516 543 WNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESP----YSEIR----IELWRTLLSTCVAKRNSRMVIQ 609 (708)
Q Consensus 543 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 609 (708)
|++..+. +..+ ...++..++..|.+.|++++|...++++. .. +. ...+..++..+...|++++|..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998763 1111 14678889999999999999999998871 11 12 2355666667778899999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHHHHHhcCCchHHHH
Q 038516 610 AAEQVLRLDPEDGTT-----HILLSNLYAATGRWDCVAK 643 (708)
Q Consensus 610 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~eA~~ 643 (708)
.+++++ ++|+.... ...++.++ ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99986643 33455555 5677766655
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=2.3e-07 Score=90.20 Aligned_cols=161 Identities=7% Similarity=-0.064 Sum_probs=122.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCChH----HHHHHHHHHhccCcHHHHHHHHHHhhHCCC-CcC----hHHHH
Q 038516 490 ALLGGYSHYGMAEEAFMVFEVILEHGL-RPDEI----TFLSLLSACSHSGLVERGKILWNQMKEHSL-IPG----HKHYS 559 (708)
Q Consensus 490 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~ 559 (708)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|+..++++.+... .++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346778889999999999999887421 12211 223455567778899999999999987411 122 33688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchH
Q 038516 560 CMVSLLSRAGLLDEAENLIAESP-------YSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTH 625 (708)
Q Consensus 560 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 625 (708)
.++..|...|++++|...++++. ...+ ...++..++..|...|++++|...+++++++.++. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999988872 2211 23467888999999999999999999999876444 5678
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHhc
Q 038516 626 ILLSNLYAATGR-WDCVAKMRRKMKG 650 (708)
Q Consensus 626 ~~l~~~~~~~g~-~~eA~~~~~~~~~ 650 (708)
..+|.+|...|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 5999999887743
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=3.6e-08 Score=105.97 Aligned_cols=144 Identities=15% Similarity=0.039 Sum_probs=72.4
Q ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038516 433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFE 509 (708)
Q Consensus 433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (708)
|++++|...++...+.. +.+...+..+...|...|++++|.+.|++.. +.+...|..+...|...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555666555554432 2234555556666666666666666666553 2345556666666666666666666666
Q ss_pred HHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 038516 510 VILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRA---GLLDEAENLIAES 581 (708)
Q Consensus 510 ~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 581 (708)
+..+. .| +...+..+..++...|++++|.+.+++..+. .| +...+..++..+... |++++|.+.++++
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 66653 33 3445555555666666666666666666552 23 244555566666666 6666666666555
No 117
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=1.1e-07 Score=104.04 Aligned_cols=191 Identities=15% Similarity=0.039 Sum_probs=146.9
Q ss_pred hCcccHHHHHHHHHHHHH-------hCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcC
Q 038516 430 ADLAILKQGEMIHSQAEK-------TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYG 499 (708)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 499 (708)
...|++++|.+.++...+ ...+.+...+..+...|...|++++|++.|++.. +.+...|..+..+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 567778888877777661 1224456778888889999999999999999885 457789999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHH
Q 038516 500 MAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENL 577 (708)
Q Consensus 500 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 577 (708)
++++|+..|+++.+. .| +...+..+..++.+.|++++ ++.|+++.+ +.|+ ...|..++.+|.+.|++++|.+.
T Consensus 482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999995 56 45678888889999999999 999999987 4454 67888999999999999999999
Q ss_pred HHhCCCCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcchH
Q 038516 578 IAESPYSEIR-IELWRTLLSTCVAKRN-----SRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 578 ~~~~~~~~~~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
++++....|+ ...|..+..++...++ .+...++.+.+..+.++++...
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 9999655455 5677777777766554 3444555555555666555543
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=1.2e-07 Score=92.19 Aligned_cols=164 Identities=5% Similarity=-0.086 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHhccCcHHHHHHHHHHhhHC---CCCcC--
Q 038516 486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE------ITFLSLLSACSHSGLVERGKILWNQMKEH---SLIPG-- 554 (708)
Q Consensus 486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~-- 554 (708)
..+...+..+...|++++|.+.+++..+.... +. ..+..+...+...|++++|...+++..+. ...+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555677888899999999999988875322 22 12333445677888999999999988754 11222
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESP---YSEIR-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE------ 620 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------ 620 (708)
..+++.++..|...|++++|...++++. ...++ ..++..++..|...|++++|...+++++++.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 4578889999999999999999998762 11122 257888999999999999999999999987543
Q ss_pred CcchHHHHHHHHHhcCCchHH-HHHHHHHhc
Q 038516 621 DGTTHILLSNLYAATGRWDCV-AKMRRKMKG 650 (708)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~ 650 (708)
.+.+|..+|.+|...|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 155688999999999999999 777776643
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=1.3e-07 Score=87.73 Aligned_cols=184 Identities=11% Similarity=-0.022 Sum_probs=131.4
Q ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCCh----HHHHHH
Q 038516 420 FALSGALSACADLAILKQGEMIHSQAEKTGHG-V-EMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDL----KCWNAL 491 (708)
Q Consensus 420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~l 491 (708)
..+......+...|++++|...++.+.+.... + ....+..+..+|.+.|++++|+..|+++. .|+. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34455666788899999999999999876422 2 24567788999999999999999999985 2332 245555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516 492 LGGYSH------------------YGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLI 552 (708)
Q Consensus 492 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 552 (708)
..++.. .|++++|+..|+++++. .|+... ....... ..+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH-----
Confidence 556554 57899999999999985 566432 2211110 00111110
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 553 PGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
.....++..|.+.|++++|...++++....|+ ...+..++.++...|+.++|...++++....|++..
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11234678899999999999999887322232 356888899999999999999999999999998765
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=1.6e-06 Score=90.26 Aligned_cols=103 Identities=12% Similarity=-0.003 Sum_probs=57.0
Q ss_pred ccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHHHHHcCCC-chHHHH
Q 038516 228 RMG-NFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIAGYMENGN-GEKAVD 303 (708)
Q Consensus 228 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~ 303 (708)
+.| ++..|+.+|+.++..- |. |+.+.+..+|++... |++..|...+.-..+.+. .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 345 4777888888777652 11 788888888888765 777777777766555542 344556
Q ss_pred HHHHHHHcCCC-CCCHhHHHHHHHHHcC----CCCccchHHHHHHHHH
Q 038516 304 MFVALRRMSLL-KPDEYTFAAIISATSA----LPASAYGKPLHALVIK 346 (708)
Q Consensus 304 ~~~~m~~~~~~-~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~ 346 (708)
+|+.....-|. +++...|...+..+.. .++.+.+..+|+..+.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 66665554232 2344455555444332 1334455555555554
No 121
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.77 E-value=6.9e-08 Score=85.68 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=102.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLST-CVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~ 600 (708)
+..+...+...|++++|...|+++.+ ..|+ ...+..++..+.+.|++++|...++++....|++..+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 44566678899999999999999886 4454 6778899999999999999999999985443555444333222 222
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
.++...|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 2333457899999999999999999999999999999999999999988754
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=3.9e-08 Score=86.12 Aligned_cols=97 Identities=9% Similarity=-0.013 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
...+..++..+.+.|++++|+..++++ ...+.+...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445666666777777777777777665 2222356667777777777777777777777777777777777777777777
Q ss_pred hcCCchHHHHHHHHHhcC
Q 038516 634 ATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~~~ 651 (708)
..|++++|...+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777777766553
No 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.74 E-value=8e-08 Score=81.10 Aligned_cols=99 Identities=10% Similarity=0.079 Sum_probs=87.2
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038516 553 PGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL 631 (708)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 631 (708)
.+...+..++..+...|++++|...++++ ...+.+...|..++..+...|++++|...++++++++|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34677888888999999999999998887 23334688899999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHhcC
Q 038516 632 YAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 632 ~~~~g~~~eA~~~~~~~~~~ 651 (708)
|...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=2.6e-08 Score=95.95 Aligned_cols=191 Identities=8% Similarity=-0.027 Sum_probs=133.7
Q ss_pred chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 038516 453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLS 528 (708)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 528 (708)
+...+..+...+.+.|++++|...|++.. +.+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556677778888899999999988774 347788888999999999999999999999884 55 4566777888
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMV 607 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 607 (708)
++...|++++|...|++..+. .|+. ..+...+....+..+...... ....... .+..+...+... ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIH-QESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCC-CCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHh-hhHHHHHHHHHH--HHHHHHHH
Confidence 899999999999999988763 2321 011111222222111111111 1222222 344554444332 26899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHhcC
Q 038516 608 IQAAEQVLRLDPEDGTTHILLSNLYAAT-GRWDCVAKMRRKMKGS 651 (708)
Q Consensus 608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 651 (708)
.+.++++++++|++......+..++.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888888777 7899999999988653
No 125
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.73 E-value=9.8e-07 Score=84.75 Aligned_cols=148 Identities=13% Similarity=0.133 Sum_probs=72.8
Q ss_pred CChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHH--HHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCC-----
Q 038516 499 GMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVE--RGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGL----- 570 (708)
Q Consensus 499 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----- 570 (708)
+++++++.+++++.+. .| |...|..-...+.+.|.++ ++++.++++++.. .-+...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 4555555555555553 22 3444444444444444444 5555555555421 1123344444444444443
Q ss_pred -HHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHH
Q 038516 571 -LDEAENLIAES-PYSEIRIELWRTLLSTCVAKRN-SRMVIQAAEQVLRLD---PEDGTTHILLSNLYAATGRWDCVAKM 644 (708)
Q Consensus 571 -~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~eA~~~ 644 (708)
+++++++++++ ...+.+...|..+...+...|+ .+.....++++++++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55555555544 2222345555555555555444 222344555554444 55555555666666666666666666
Q ss_pred HHHHh
Q 038516 645 RRKMK 649 (708)
Q Consensus 645 ~~~~~ 649 (708)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 126
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.73 E-value=6.7e-08 Score=84.43 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAESPY-------------------SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD 618 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 618 (708)
+...+..+.+.|++++|...|+++.. .+....+|..+..++...|++++|+..++++++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44445555555555555555544410 11234678888899999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchH-HHHHHHHHHHHHHHh
Q 038516 619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKID-DAQAELHRLRGNMRK 697 (708)
Q Consensus 619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~ 697 (708)
|+++.+|..+|.+|...|++++|...+++..+. .|... .+...+..+..++++
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988764 46665 677788888877776
Q ss_pred hhh
Q 038516 698 LVT 700 (708)
Q Consensus 698 ~~~ 700 (708)
..+
T Consensus 148 ~~~ 150 (162)
T 3rkv_A 148 KKA 150 (162)
T ss_dssp HTT
T ss_pred HHH
Confidence 633
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.70 E-value=7.7e-08 Score=95.33 Aligned_cols=160 Identities=12% Similarity=0.020 Sum_probs=115.9
Q ss_pred CCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516 468 GDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 468 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
+++++|...|+... .| +...|..+...|.+.|++++|+..|++.++. .|+...+ . .+.+.+.-
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~--~~~~~~~~- 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------S--NEEAQKAQ- 192 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------C--SHHHHHHH-
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC---------C--hHHHHHHH-
Confidence 44455555554443 12 4556777778888888888888888888774 3432110 0 01111100
Q ss_pred HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 545 QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
. -....|..++.+|.+.|++++|+..++++ ...+.+...|..++.++...|++++|+..++++++++|++..
T Consensus 193 ~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 193 A-------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 0 01456778889999999999999999887 333357888999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHH-HHHHHH
Q 038516 624 THILLSNLYAATGRWDCVA-KMRRKM 648 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~-~~~~~~ 648 (708)
++..++.++...|++++|. ..+++|
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999994 455555
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.70 E-value=6e-07 Score=82.27 Aligned_cols=175 Identities=12% Similarity=-0.057 Sum_probs=131.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-CCChHHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 038516 438 GEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-HPDLKCWNALLGGYSHYG----MAEEAFMVFEVIL 512 (708)
Q Consensus 438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 512 (708)
|...+....+.| ++..+..|...|...+++++|...|++.. ..+...+..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444433 45566677777777888888888888775 3467777778888777 6 8999999999998
Q ss_pred HCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhhHCCCC-cChHHHHHHHHHHHh----cCCHHHHHHHHHhCCC
Q 038516 513 EHGLRPDEITFLSLLSACSH----SGLVERGKILWNQMKEHSLI-PGHKHYSCMVSLLSR----AGLLDEAENLIAESPY 583 (708)
Q Consensus 513 ~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 583 (708)
+.| +...+..|...|.. .+++++|.++|++..+.|.. .....+..|...|.. .+++++|..+++++..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 865 56677777777776 88999999999999875532 126677888888988 8899999999999843
Q ss_pred CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 038516 584 SEIRIELWRTLLSTCVAK-R-----NSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 584 ~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 619 (708)
.+.++..+..|...|... | |.++|...++++.+..+
T Consensus 158 ~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 158 LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 334566777777777652 3 89999999999988754
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.70 E-value=5.3e-08 Score=80.00 Aligned_cols=96 Identities=20% Similarity=0.088 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
.+..++..+.+.|++++|...++++ ...|.+...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556778899999999999999988 333357889999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCC
Q 038516 636 GRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 636 g~~~eA~~~~~~~~~~~ 652 (708)
|++++|+..++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887653
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=1.8e-07 Score=81.86 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=91.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 600 (708)
+..+...+...|++++|...|++..+. .| +...+..++..+...|++++|...++++ ...+.+...|..++..+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555666666666666666552 22 3556666777777777788877777766 2222467788888889999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHHHhc
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNL--YAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~~~~~ 650 (708)
.|++++|...+++++++.|++...+..++.+ +...|++++|...+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998888555444 8889999999998886643
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=6.7e-06 Score=85.61 Aligned_cols=371 Identities=8% Similarity=-0.052 Sum_probs=211.8
Q ss_pred cCC-ChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCC-hHHH
Q 038516 193 KND-KMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSD-TQTA 270 (708)
Q Consensus 193 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a 270 (708)
+.| +++.|..+|+.+... -|. ++.+.+..+|+..+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888888888763 233 8999999999999885 4689999888887766653 3455
Q ss_pred HHHHhccCC------CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHH
Q 038516 271 FSVFTRIEN------PDLVSWNSMIAGYME----NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPL 340 (708)
Q Consensus 271 ~~~~~~~~~------~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 340 (708)
..+|+.... .+...|...+.-+.. +++.+.+..+|++.... ....-...|..... +....+...+..+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHH-HHHHhccccHHHH
Confidence 666665432 466778877776542 45678899999999864 11111122221111 1111111112222
Q ss_pred HHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC----CCEeeehhhHHHHhcCC-------ChHHHHHHHHH
Q 038516 341 HALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE----KDIVLWTEMIIGHSRMG-------DGECAIKLFCK 409 (708)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-------~~~~A~~~~~~ 409 (708)
..... +.+..|..+++.+.. .+...|...+.--...+ ..+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 11110 111222222221111 11223333333211110 02346677887
Q ss_pred HhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--------
Q 038516 410 MCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-------- 481 (708)
Q Consensus 410 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------- 481 (708)
++... +-+...|...+.-+...|+.+.|..+++..... +.+...+...... ...++. ...+.+...
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC--------
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccchhh
Confidence 77643 334556666666677788889999999888877 3343333222211 111111 111221110
Q ss_pred ----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-hccCcHHHHHHHHHHhhHCCCCcChH
Q 038516 482 ----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC-SHSGLVERGKILWNQMKEHSLIPGHK 556 (708)
Q Consensus 482 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~ 556 (708)
......|...+....+.++.+.|..+|+++ .. ...+...|......- ...++.+.|..+|+...+.- .-+..
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~ 355 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL 355 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence 011245777777777788899999999998 32 122333343222211 12336899999999988741 11234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
.+...++.....|+.+.|..+++++. ....+|...+..-...|+.+.+..++++...
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLE---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSC---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55667787888999999999999984 3578888888888889999999998888875
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=3e-07 Score=86.11 Aligned_cols=181 Identities=4% Similarity=-0.091 Sum_probs=124.5
Q ss_pred hcCCHHHHHHHHhhCC---CCChHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCChH--------------
Q 038516 466 KNGDLRAAESIFSQVL---HPDLKCWNAL-------LGGYSHYGMAEEAFMVFEVILEHGLRPDEI-------------- 521 (708)
Q Consensus 466 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 521 (708)
..++...|.+.|.++. +.....|+.+ ..++...++..+++..+++..+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4677888888887774 3345677777 4556665666666665555554 233221
Q ss_pred --------HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HH
Q 038516 522 --------TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IE 589 (708)
Q Consensus 522 --------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~ 589 (708)
....+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..++..... ++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHH
Confidence 1223455677888888888888887763 354335556677888888888888888766443 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLD--PE-DGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++..+..++...|+.++|+..++++..-. |. .+.....++.++.++|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67777778888888888888888887533 44 4446778888888888888888888888764
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.68 E-value=2.7e-07 Score=77.18 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
...+..++..+.+.|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|+++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 344555555555555555555555554 2222245555555555555556666666666666666655555556666666
Q ss_pred hcCCchHHHHHHHHHhc
Q 038516 634 ATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~~ 650 (708)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666655555543
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.67 E-value=8e-08 Score=94.06 Aligned_cols=197 Identities=11% Similarity=-0.016 Sum_probs=151.3
Q ss_pred CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038516 431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEV 510 (708)
Q Consensus 431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 510 (708)
..|++++|.++++...+..-. . .+...+++++|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 467888999998887764221 1 12225889999888765 36678899999999999999
Q ss_pred HHHCCCCC-C----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516 511 ILEHGLRP-D----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAE 580 (708)
Q Consensus 511 m~~~g~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 580 (708)
..+..... + ..+|..+...|...|++++|+..|++..+. |-.+ ...++..++..|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 87631111 1 346778888999999999999999988653 2111 24678889999988 999999999988
Q ss_pred C----CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCCchHHHHHHHH
Q 038516 581 S----PYSE-I--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT------THILLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 581 ~----~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~eA~~~~~~ 647 (708)
+ +... + ...++..+...+...|++++|...+++++++.|++.. .+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 1110 1 1457888899999999999999999999998776542 577888899999999999999998
Q ss_pred Hh
Q 038516 648 MK 649 (708)
Q Consensus 648 ~~ 649 (708)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=8.5e-06 Score=78.20 Aligned_cols=225 Identities=8% Similarity=-0.002 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhHCCCccCHH-HHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHhh----Hhc---CC
Q 038516 400 GECAIKLFCKMCREGLKCDNF-ALSGALSACADLA--ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMY----AKN---GD 469 (708)
Q Consensus 400 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 469 (708)
.++|+..++.++.. .|+.. .++.--..+...+ .++++..+++.+...+. -+..+++.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777666654 34433 3444444444555 77777777777766542 2333333322222 333 78
Q ss_pred HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc------HHH
Q 038516 470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE--EAFMVFEVILEHGLRPDEITFLSLLSACSHSGL------VER 538 (708)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~ 538 (708)
+++++.+++.+. +.|..+|+.-.-.+.+.|+++ ++++.++++++... -|...|+.-...+.+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence 899999999885 467888988888888889888 99999999999642 266777776666666666 899
Q ss_pred HHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHH-HHHHHHhCCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 539 GKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDE-AENLIAESPY----SEIRIELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 539 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
+++.++.++. ..| +...|+.+..++.+.|+..+ +..+..++.. .+.++..+..++..+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999987 445 47788888889999887544 6667777622 23578899999999999999999999999
Q ss_pred HHHh-cCCCCcchHHHHHH
Q 038516 613 QVLR-LDPEDGTTHILLSN 630 (708)
Q Consensus 613 ~~~~-~~p~~~~~~~~l~~ 630 (708)
.+.+ .+|-....|...+.
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9997 79999888877664
No 136
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.67 E-value=2.5e-07 Score=75.36 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345666777777888888888887776 2222467777778888888888888888888888888888888888888888
Q ss_pred hcCCchHHHHHHHHHhcC
Q 038516 634 ATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~~~ 651 (708)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 888888888888877654
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.67 E-value=3.3e-06 Score=81.88 Aligned_cols=158 Identities=12% Similarity=0.017 Sum_probs=120.7
Q ss_pred HHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHH
Q 038516 460 LVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR-PD----EITFLS 525 (708)
Q Consensus 460 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 525 (708)
.+..+...|++++|...+++... ++ ...+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999988642 12 113334666777788999999999999984322 22 225888
Q ss_pred HHHHHhccCcHHHHHHHHHHhhHC-----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHH
Q 038516 526 LLSACSHSGLVERGKILWNQMKEH-----SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWR 592 (708)
Q Consensus 526 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~ 592 (708)
+...|...|++++|..+|+++.+. +..+. ..++..++..|.+.|++++|...++++ .....-..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888999999999999999999852 22222 347888999999999999999998876 11112267888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 038516 593 TLLSTCVAKR-NSRMVIQAAEQVLRL 617 (708)
Q Consensus 593 ~l~~~~~~~~-~~~~a~~~~~~~~~~ 617 (708)
.++.++...| +.++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999 579999999998864
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=2.1e-07 Score=77.55 Aligned_cols=117 Identities=9% Similarity=-0.024 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 600 (708)
.+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...++++ ...+.+...+..++..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 34445555666666666666666665521 123555666777777777888887777776 2232457788888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD 639 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 639 (708)
.|++++|...+++++++.|+++..+..++.++...|+++
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999888763
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=8.3e-07 Score=81.46 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=93.9
Q ss_pred HHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 038516 457 CGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLV 536 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 536 (708)
+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556666777777777777777776777777777777777777777777777777642 22345566666666666777
Q ss_pred HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
++|.+.|++..+. .|+..... +...|. ...+.....+..++.++...|++++|...++++++
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLID-----YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEE-----CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCccHHH-----HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777666666653 11100000 000000 11112346777888888888999999999999999
Q ss_pred cCCCCc
Q 038516 617 LDPEDG 622 (708)
Q Consensus 617 ~~p~~~ 622 (708)
+.|++.
T Consensus 150 ~~p~~~ 155 (213)
T 1hh8_A 150 MKSEPR 155 (213)
T ss_dssp TCCSGG
T ss_pred cCcccc
Confidence 988763
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.66 E-value=2e-08 Score=84.64 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=75.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES----PYSE----IR-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRL------- 617 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 617 (708)
+...+..+...|++++|+..|+++ |..+ .+ ...|..+..++...|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 444556666667777777766665 2210 02 338999999999999999999999999999
Q ss_pred CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 618 DPEDGTTH----ILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 618 ~p~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+|+++..| ..+|.++...|++++|+..+++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999988663
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=2.2e-07 Score=77.73 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=78.1
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 600 (708)
+..+...+...|++++|...|++..+. .| +...+..++..+...|++++|.+.++++ ...+.+...+..++..+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 444444455555555555555555442 22 3445555666666666666666666665 2222457788888888999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR 637 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 637 (708)
.|++++|...++++++++|++...+..++.++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988774
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.64 E-value=3.7e-07 Score=75.21 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCV 599 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 599 (708)
..+..+...+...|++++|.++++++.+.. +.+...+..++..+.+.|++++|..+++++ ...+.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344455555556666666666666655421 123455666677777777777777777665 222245777888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG 636 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 636 (708)
..|++++|...++++++.+|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999999999999988888888877654
No 143
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=1.1e-07 Score=78.77 Aligned_cols=96 Identities=6% Similarity=0.033 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT-------THI 626 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~ 626 (708)
...+..++..+.+.|++++|++.|+++ ...|.+...|..++.+|...|++++|+..++++++++|++.. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345677889999999999999999887 334356888999999999999999999999999999988764 577
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhc
Q 038516 627 LLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 627 ~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+|.+|...|++++|++.+++..+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888999999999999999998765
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.62 E-value=2.9e-07 Score=78.57 Aligned_cols=105 Identities=9% Similarity=0.006 Sum_probs=86.3
Q ss_pred CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHH
Q 038516 516 LRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWR 592 (708)
Q Consensus 516 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~ 592 (708)
+.|+ ...+..+...+.+.|++++|...|+++.+ +.|+ ...|..++.+|...|++++|...|+++ ...|.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3554 34566677788889999999999999887 4454 777888999999999999999999888 33334678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 593 TLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
.++.++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999864
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=4.2e-07 Score=82.63 Aligned_cols=128 Identities=9% Similarity=-0.022 Sum_probs=66.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HH
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IE 589 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~ 589 (708)
+..+...+...|++++|...+++..+. +..| ....+..++..+...|++++|.+.++++ ...+.+ ..
T Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 108 (203)
T 3gw4_A 29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA 108 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 333444444444444444444444331 1111 1334455555566666666665555544 101001 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--c----chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED--G----TTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+..+...+...|++++|...+++++++.+.. + ..+..++.+|...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35555666666677777777777666543221 1 1245677777777777777777766543
No 146
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.60 E-value=2.3e-07 Score=74.80 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTTHILLSNL 631 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 631 (708)
...+..++..+...|++++|...++++ ...+.+...|..++..+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455667788888888999998888876 223246788888999999999999999999999999999 99999999999
Q ss_pred HHhc-CCchHHHHHHHHHhcCCC
Q 038516 632 YAAT-GRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 632 ~~~~-g~~~eA~~~~~~~~~~~~ 653 (708)
|... |++++|.+.+++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998876543
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=3.8e-07 Score=75.86 Aligned_cols=98 Identities=7% Similarity=0.001 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516 554 GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY 632 (708)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 632 (708)
+...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3566778889999999999999999987 233346888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhcC
Q 038516 633 AATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 633 ~~~g~~~eA~~~~~~~~~~ 651 (708)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 148
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=7e-07 Score=76.27 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
...+..++..+...|++++|...++++....|+ ...|..+...+...|++++|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455666667777777777777777766333344 4566667777777777777777777777777777777777777
Q ss_pred HHHhcCCchHHHHHHHHHhc
Q 038516 631 LYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 631 ~~~~~g~~~eA~~~~~~~~~ 650 (708)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777776655
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.57 E-value=9e-08 Score=81.91 Aligned_cols=115 Identities=10% Similarity=-0.030 Sum_probs=85.1
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038516 508 FEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYS 584 (708)
Q Consensus 508 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 584 (708)
|+++.. +.|+ ...+..+...+...|++++|...|+++.. ..| +...|..++.+|...|++++|...++++ ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 3443 33455566677778888888888887776 334 4666777888888888888888888887 223
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 585 EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 585 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
|.++..+..++.++...|++++|+..+++++++.|+++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 246778888889999999999999999999999999887543
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=6.8e-07 Score=73.57 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
...+..++..+...|++++|.+.++++. ..+.+...+..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4677888999999999999999998872 232467889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhcC
Q 038516 634 ATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~~~ 651 (708)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 151
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.56 E-value=2.4e-07 Score=77.14 Aligned_cols=93 Identities=12% Similarity=0.010 Sum_probs=74.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHH
Q 038516 559 SCMVSLLSRAGLLDEAENLIAESPYSEI-RI---ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED---GTTHILLSNL 631 (708)
Q Consensus 559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 631 (708)
..++..+...|++++|...++++....| +. ..+..++.++...|++++|...++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3466778888888888888877622112 22 577778888888999999999999999999998 6778899999
Q ss_pred HHhcCCchHHHHHHHHHhcC
Q 038516 632 YAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 632 ~~~~g~~~eA~~~~~~~~~~ 651 (708)
|...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999888764
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=1.4e-06 Score=81.46 Aligned_cols=138 Identities=11% Similarity=-0.059 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHH
Q 038516 488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLL 565 (708)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~ 565 (708)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 445667788888999999888888764 4655454455557888999999999998665421 121 34677789999
Q ss_pred HhcCCHHHHHHHHHhCCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516 566 SRAGLLDEAENLIAESPYSE--I--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS 629 (708)
Q Consensus 566 ~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 629 (708)
.+.|++++|+..+++....+ | ....+.....++.+.|+.++|...+++++..+|+ +.++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999883221 3 3457778888899999999999999999999998 76665554
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=1.1e-06 Score=79.57 Aligned_cols=121 Identities=3% Similarity=-0.117 Sum_probs=61.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcC--------------hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEH-SLIPG--------------HKHYSCMVSLLSRAGLLDEAENLIAES-PYSE 585 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~ 585 (708)
.+..+...+...|++++|...|++..+. .-.|+ ...+..++.+|...|++++|...++++ ...+
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3444555566666666666666666553 11110 134445555555555555555555544 1121
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA 642 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 642 (708)
.+...+..++.++...|++++|...++++++++|++..++..++.++...|+.+++.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 234455555555555555555555555555555555555555555555555444443
No 154
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=6.9e-07 Score=81.21 Aligned_cols=152 Identities=13% Similarity=0.006 Sum_probs=103.1
Q ss_pred hcCCHHHHHH---HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHhccCcHH
Q 038516 466 KNGDLRAAES---IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH----GLRP-DEITFLSLLSACSHSGLVE 537 (708)
Q Consensus 466 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~ 537 (708)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+. +..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 554433345567777778888888888888888877762 1122 2344666667788888888
Q ss_pred HHHHHHHHhhHC----CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCC----HHHHHHHHHHHHhcCC
Q 038516 538 RGKILWNQMKEH----SLIP--GHKHYSCMVSLLSRAGLLDEAENLIAESP----YSEIR----IELWRTLLSTCVAKRN 603 (708)
Q Consensus 538 ~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~ 603 (708)
+|...+++..+. +..| ....+..++..+...|++++|...+++.. .. .+ ...+..+...+...|+
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-DDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHCcC
Confidence 888888887654 2122 24457778888888999999888887761 11 12 2335677778888999
Q ss_pred HHHHHHHHHHHHhcC
Q 038516 604 SRMVIQAAEQVLRLD 618 (708)
Q Consensus 604 ~~~a~~~~~~~~~~~ 618 (708)
+++|...+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888764
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.51 E-value=7.1e-07 Score=79.13 Aligned_cols=128 Identities=10% Similarity=0.078 Sum_probs=95.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHH-HHhcCCH--
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSL-LSRAGLL-- 571 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~-- 571 (708)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+. .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34577788888888877752 224566777777888888888888888888763 33 45667777788 7788888
Q ss_pred HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 572 DEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
++|...++++ ...+.+...+..++..+...|++++|...++++++++|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999998887 223245788888999999999999999999999999999876443
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.49 E-value=6e-07 Score=93.41 Aligned_cols=115 Identities=10% Similarity=-0.012 Sum_probs=67.4
Q ss_pred HHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH
Q 038516 461 VDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLV 536 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 536 (708)
...+.+.|++++|.+.|++.. +.+...|..+..+|.+.|++++|+..+++..+. .| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 345566677777777776653 234666667777777777777777777777764 34 345566666666677777
Q ss_pred HHHHHHHHHhhHCCCCcC-hHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038516 537 ERGKILWNQMKEHSLIPG-HKHYSCMVSL--LSRAGLLDEAENLIA 579 (708)
Q Consensus 537 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 579 (708)
++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777766653 232 2334444444 566666666666666
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.48 E-value=8e-07 Score=73.91 Aligned_cols=97 Identities=8% Similarity=0.043 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED-------GTTHI 626 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 626 (708)
...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|++ +.++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677888888999999999998887 2233467888888999999999999999999999998877 77899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 627 LLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 627 ~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.++.+|...|++++|.+.++++.+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.48 E-value=8.4e-07 Score=80.34 Aligned_cols=149 Identities=10% Similarity=-0.038 Sum_probs=100.2
Q ss_pred HhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-h----------------H
Q 038516 462 DMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-E----------------I 521 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----------------~ 521 (708)
......|+++++.+.++.... .....+..+...+...|++++|+..|++..+. .|+ . .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHH
Confidence 344455677777777664432 24556778888899999999999999999984 332 2 5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCV 599 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 599 (708)
.+..+..++...|++++|+..+++..+. .| +...+..++.+|...|++++|.+.++++ ...+.+..++..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence 6777788889999999999999999873 44 4677888999999999999999999887 233246777777777777
Q ss_pred hcCCHHHHH-HHHHHH
Q 038516 600 AKRNSRMVI-QAAEQV 614 (708)
Q Consensus 600 ~~~~~~~a~-~~~~~~ 614 (708)
..++.+++. ..+.++
T Consensus 168 ~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 666665555 333433
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=5.9e-07 Score=88.89 Aligned_cols=97 Identities=9% Similarity=-0.035 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-R---------------IELWRTLLSTCVAKRNSRMVIQAAEQVLRLD 618 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 618 (708)
...+..++..|.+.|++++|...|+++....| + ...|..+..++...|++++|+..++++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566667777777777777777776611112 2 5789999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
|+++.+|..++.+|...|++++|+..++++.+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.48 E-value=2.1e-06 Score=74.88 Aligned_cols=107 Identities=13% Similarity=0.045 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTC 598 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~ 598 (708)
..+..+...+...|++++|+..|++.++ +.| +...|..++.+|.+.|++++|+..++++ ...+.+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555566666677777776666665 233 3566777778888888888888888776 22324688899999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLS 629 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 629 (708)
...|++++|...++++++++|++...+...+
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999998766555
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=2e-06 Score=73.41 Aligned_cols=111 Identities=9% Similarity=-0.032 Sum_probs=75.8
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIPG----HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS 596 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 596 (708)
.+..+...+...|++++|...|++..+ ..|+ ...+..++..|...|++++|...++++ ...+.+...|..+..
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344444445555555555555555544 2233 455666777777777777777777765 222246778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
++...|++++|...++++++++|++..++..+..+...
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 89999999999999999999999998887777766543
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.2e-06 Score=72.54 Aligned_cols=109 Identities=9% Similarity=-0.015 Sum_probs=75.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 600 (708)
+..+...+.+.|++++|...|++..+ ..| +...|..++.+|.+.|++++|...++++ ...+.+...|..++.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 44444555566666666666666655 223 3456666777777777777777777766 2232457778888888888
Q ss_pred cCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 038516 601 KRNSRMVIQAAEQVLRLD------PEDGTTHILLSNLYA 633 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 633 (708)
.|++++|...++++++++ |++..++..+..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999998 888777777766543
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=2e-06 Score=69.89 Aligned_cols=109 Identities=10% Similarity=0.002 Sum_probs=74.5
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCV 599 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~ 599 (708)
.+..+...+...|++++|...+++..+. .| +...+..++..+...|++++|...++++ ...+.+...+..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555556666666666555542 22 3455666666777777777777777665 222245777888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY 632 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 632 (708)
..|++++|...++++++.+|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 899999999999999999999888877777654
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=2.1e-06 Score=74.89 Aligned_cols=97 Identities=7% Similarity=0.003 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
...+..++..+...|++++|...++++ ...+.+...|..++..+...|++++|...++++++++|+++.++..++.+|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345777888999999999999999987 2232468889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHhcC
Q 038516 634 ATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 634 ~~g~~~eA~~~~~~~~~~ 651 (708)
..|++++|...++++.+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 999999999999998764
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=7.6e-07 Score=75.55 Aligned_cols=106 Identities=8% Similarity=-0.039 Sum_probs=76.3
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 600 (708)
+..+...+...|++++|...|+++.. ..| +...|..++.+|.+.|++++|...++++ ...|.++..+..++.++..
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 44444566667777777777777665 233 3556667777788888888888887776 2232456778888888899
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSN 630 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 630 (708)
.|++++|...+++++++.|+++........
T Consensus 99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 999999999999999999988876554443
No 166
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=3.5e-06 Score=81.68 Aligned_cols=162 Identities=10% Similarity=-0.051 Sum_probs=119.6
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCC---CCCh------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--hH
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVL---HPDL------KCWNALLGGYSHYGMAEEAFMVFEVILEHGLR---PD--EI 521 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 521 (708)
.+...+..+...|++++|.+.+.+.. +... ..+..+...+...|++++|+..+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34455677788999999999887653 1111 22444666778889999999999999864221 11 34
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCCH
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESP-------YSEIRI 588 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~ 588 (708)
+++.+...|...|++++|..+++++.+. +..+. ..++..++..|...|++++|...++++. ....-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6788888999999999999999998732 21121 2578889999999999999999998761 110126
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 038516 589 ELWRTLLSTCVAKRNSRMV-IQAAEQVLRL 617 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 617 (708)
.++..++..+...|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788889999999999999 8888888764
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=2e-06 Score=89.04 Aligned_cols=163 Identities=9% Similarity=-0.022 Sum_probs=113.0
Q ss_pred cCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 038516 467 NGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILW 543 (708)
Q Consensus 467 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 543 (708)
.+++++|...|+.... .....|..+...|.+.|++++|+..|+++++. .|+...+ . -+...+ .
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~ 312 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-S 312 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-H
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-H
Confidence 3444455555544331 23456777888888888888888888888873 3332110 0 011000 0
Q ss_pred HHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 544 NQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 544 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
.. -....|..++.+|.+.|++++|+..++++ ...+.+...|..+..++...|++++|...++++++++|++.
T Consensus 313 ~~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 313 ES-------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 00 11456778889999999999999999887 33334688899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHH-HHHHHhc
Q 038516 623 TTHILLSNLYAATGRWDCVAK-MRRKMKG 650 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~-~~~~~~~ 650 (708)
.++..++.++...|++++|.+ .+++|..
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998875 4555543
No 168
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=2.9e-07 Score=75.09 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=54.7
Q ss_pred cCCHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516 568 AGLLDEAENLIAESPYS----EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK 643 (708)
Q Consensus 568 ~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 643 (708)
.|++++|+..++++... +.+...|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666665222 22345566677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhc
Q 038516 644 MRRKMKG 650 (708)
Q Consensus 644 ~~~~~~~ 650 (708)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.36 E-value=1.6e-06 Score=86.72 Aligned_cols=112 Identities=8% Similarity=0.048 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 600 (708)
..+..+...+.+.|++++|++.|++.++. .|.. ......+++.. ..+.+...|..+..++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK------LQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHHh
Confidence 34556666777777777777777776651 0000 00000000000 111234455556666666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666554
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=9.6e-07 Score=91.87 Aligned_cols=116 Identities=13% Similarity=0.084 Sum_probs=92.6
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
.+.+.|++++|.+.|++..+ ..|+ ...+..++.+|.+.|++++|++.++++ ...+.+...|..++.++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45667788888888888776 3443 677888888888888999988888887 3333467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHH
Q 038516 607 VIQAAEQVLRLDPEDGTTHILLSNL--YAATGRWDCVAKMRR 646 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~ 646 (708)
|+..++++++++|++...+..++.+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999888 888999999999887
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.34 E-value=2.6e-06 Score=71.63 Aligned_cols=112 Identities=7% Similarity=-0.082 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516 519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS 596 (708)
Q Consensus 519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 596 (708)
+...+..+...+...|++++|...|+...+. .| +...+..++.++...|++++|...++++ ...+.+...|..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445555555666666666666666666552 23 2456666777777777777777777666 222245777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-----CcchHHHHHHHH
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPE-----DGTTHILLSNLY 632 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 632 (708)
++...|+++.|...+++++++.|+ +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888888899999999998888887 455454554443
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=4.1e-06 Score=86.55 Aligned_cols=163 Identities=7% Similarity=-0.094 Sum_probs=118.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC-hH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHG-LRPDEI----TFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG-HK 556 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~ 556 (708)
.+..++..|...|++++|.+++.++...- -.++.. ..+.+-..+...|+++.|..+++..... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 36778888999999999999988876521 112221 1233333556678999999998887643 33333 55
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----c
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES----P---YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE---D----G 622 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~----~ 622 (708)
++..|+..|...|++++|..+++++ . ..+....++..++..|...||+++|...+++++...|. . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788999999999999999998876 1 11112556888888999999999999999999876432 2 2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 623 TTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
..+..++.++...|++++|...+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346677888889999999988877664
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.31 E-value=3.3e-06 Score=87.44 Aligned_cols=95 Identities=9% Similarity=0.035 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAESPY-SEIR---------------IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE 620 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 620 (708)
.+..++..|.+.|++++|...|+++.. .+.+ ..+|..+..++...|++++|+..++++++++|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444555566666666666666655411 1011 577888999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++.+|..++.+|...|++++|+..++++.+.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999875
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.30 E-value=3.3e-06 Score=81.19 Aligned_cols=113 Identities=6% Similarity=-0.133 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516 519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS 596 (708)
Q Consensus 519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~ 596 (708)
+...+..+...+...|++++|...|++..+ ..| +...|..++.+|.+.|++++|...++++ ...+.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 455677777788888999999999988887 344 4677888888888999999999988887 334346778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
++...|++++|...++++++++|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 8888999999999999999888887654444444333
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.29 E-value=4.2e-06 Score=83.69 Aligned_cols=139 Identities=9% Similarity=-0.039 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHH
Q 038516 485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVS 563 (708)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~ 563 (708)
...|..+...+.+.|++++|+..|++.++. .|+.. ..... +...+ ..| +...|..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHH
Confidence 456888889999999999999999999873 11110 00011 11111 223 3567888999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516 564 LLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA 642 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 642 (708)
+|.+.|++++|++.++++ ...+.+...|..+..++...|++++|...++++++++|++..++..++.++...++++++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 3443468889999999999999999999999999999999999999999999999988886
Q ss_pred HH
Q 038516 643 KM 644 (708)
Q Consensus 643 ~~ 644 (708)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=1.3e-06 Score=86.53 Aligned_cols=149 Identities=11% Similarity=-0.021 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516 485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL 564 (708)
Q Consensus 485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 564 (708)
...+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+. ...|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456777788888899999999999998874 565432 233445555443321 2367888999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCCchHHH
Q 038516 565 LSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY-AATGRWDCVA 642 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~eA~ 642 (708)
|.+.|++++|+..++++ ...+.+...|..+..++...|++++|+..++++++++|++..++..|+.+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 333346888999999999999999999999999999999999999998884 4456777888
Q ss_pred HHHHHHhcCC
Q 038516 643 KMRRKMKGSM 652 (708)
Q Consensus 643 ~~~~~~~~~~ 652 (708)
..+++|.+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.28 E-value=4.5e-05 Score=73.97 Aligned_cols=210 Identities=12% Similarity=0.008 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC-CHHHHHHHHhhCC---CCChHHHHHHHHHHHhc-C-ChHHHHHHHHH
Q 038516 437 QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG-DLRAAESIFSQVL---HPDLKCWNALLGGYSHY-G-MAEEAFMVFEV 510 (708)
Q Consensus 437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~ 510 (708)
+|.++.+.+...+ +-+..+++.--..+...| .+++++++++.++ +.+..+|+.-...+.+. + ++++++.++++
T Consensus 72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3444444444433 223334444444444555 4777777777764 34566777766666665 6 77788888888
Q ss_pred HHHCCCCC-ChHHHHHHHHHHhccCcHH--------HHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCC-------HHHH
Q 038516 511 ILEHGLRP-DEITFLSLLSACSHSGLVE--------RGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGL-------LDEA 574 (708)
Q Consensus 511 m~~~g~~p-~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A 574 (708)
+.+. .| |...|+.-...+.+.|.++ ++++.++++++.. .-+...|+....++.+.++ ++++
T Consensus 151 ~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 151 SLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 8774 33 5555655544444444444 7777888777632 2245667777777777665 6778
Q ss_pred HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCcchHHH
Q 038516 575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNS--------------------RMVIQAAEQVLRLD------PEDGTTHIL 627 (708)
Q Consensus 575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~ 627 (708)
+++++++ ...+.+...|..+.+.+...|+. ......+..++... +.++-++..
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~ 307 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEY 307 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHH
Confidence 8777776 33335677787777777665543 22333333333222 455667889
Q ss_pred HHHHHHhcCCchHHHHHHHHHhc
Q 038516 628 LSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 628 l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
|+++|.+.|+.++|.++++.+.+
T Consensus 308 l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 308 LADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Confidence 99999999999999999998864
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=2.9e-06 Score=73.54 Aligned_cols=94 Identities=18% Similarity=0.182 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCC-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Ccc
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES----PYS-E--IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE------DGT 623 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 623 (708)
.+..++..+...|++++|.+.++++ +.. . .....+..+...+...|++++|...+++++++.+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4455556666666666666665554 111 0 01345666667777788888888888887765322 234
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 624 THILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 577889999999999999998887654
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.26 E-value=3.2e-05 Score=81.86 Aligned_cols=168 Identities=13% Similarity=0.026 Sum_probs=138.1
Q ss_pred CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccC
Q 038516 469 DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGM----------AEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSG 534 (708)
Q Consensus 469 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 534 (708)
..++|.+.++.++ +.+...|+.--..+...|+ ++++++.++++.+. .| +...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 3467788888775 3456778887777777777 89999999999985 45 5677888777888888
Q ss_pred --cHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc--------
Q 038516 535 --LVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAG-LLDEAENLIAES-PYSEIRIELWRTLLSTCVAK-------- 601 (708)
Q Consensus 535 --~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------- 601 (708)
+++++++.++++.+. .| +...|+.-..++.+.| .+++++++++++ ...+.+...|......+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 779999999999983 34 4777888888888899 899999999998 34435788899888887663
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516 602 ------RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC 640 (708)
Q Consensus 602 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 640 (708)
+.++++.+.+++++.++|++.++|..+.+++...|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999998665
No 180
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.26 E-value=0.00025 Score=68.80 Aligned_cols=230 Identities=12% Similarity=0.038 Sum_probs=157.4
Q ss_pred cCCChHHHHHHHHHHhHCCCccCHH-HHHHHHHHHhCcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc-C-CHH
Q 038516 396 RMGDGECAIKLFCKMCREGLKCDNF-ALSGALSACADLA-ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN-G-DLR 471 (708)
Q Consensus 396 ~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 471 (708)
..+..++|++++++++.. .|+.. .++.--..+...+ .++++..+++.+...+ +-+..+++.-...+.+. + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 344556778877777764 34433 3444444444455 4788888888777654 34555565555555555 6 788
Q ss_pred HHHHHHhhCCC---CChHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-----
Q 038516 472 AAESIFSQVLH---PDLKCWNALLGGYSHYGMAE--------EAFMVFEVILEHGLRPDEITFLSLLSACSHSGL----- 535 (708)
Q Consensus 472 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----- 535 (708)
+++++++.+.. .|..+|+.-.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999998874 46777877666666666666 8999999999963 2267778887777777765
Q ss_pred --HHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCH--------------------HHHHHHHHhCCCC-------C
Q 038516 536 --VERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLL--------------------DEAENLIAESPYS-------E 585 (708)
Q Consensus 536 --~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~-------~ 585 (708)
++++++++++++. ..|+ ...|+.+-..+.+.|+. .+..++..++... .
T Consensus 222 ~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 7889999988887 4554 66777777777777653 3444454444221 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHHHH
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVL-RLDPEDGTTHILLSNL 631 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~ 631 (708)
+++..+..++..|...|+.++|..+++.+. +.+|-....|...+..
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 678889999999999999999999999987 6788877777665543
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.26 E-value=1.9e-06 Score=72.55 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAESP-Y-------SEIRIELW----RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
.|..+..++.+.|++++|+..++++. . .|.+...| ...+.++...|++++|+..|+++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 56667777777777777777766652 2 43346678 899999999999999999999999999999886
Q ss_pred HHHHH
Q 038516 625 HILLS 629 (708)
Q Consensus 625 ~~~l~ 629 (708)
...+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 54443
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=9.9e-07 Score=71.86 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=71.9
Q ss_pred cCcHHHHHHHHHHhhHCCC-Cc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038516 533 SGLVERGKILWNQMKEHSL-IP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQ 609 (708)
Q Consensus 533 ~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 609 (708)
.|++++|+..|++..+.+. .| +...+..++.+|...|++++|...++++ ...|.+...+..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 5677788888888876421 23 3567888889999999999999999887 2233468888889999999999999999
Q ss_pred HHHHHHhcCCCCcchHH
Q 038516 610 AAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 610 ~~~~~~~~~p~~~~~~~ 626 (708)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999999887544
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=3.9e-06 Score=68.67 Aligned_cols=98 Identities=7% Similarity=0.002 Sum_probs=65.2
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516 523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~ 600 (708)
+..+...+.+.|++++|...|++..+ ..| +...|..++.++.+.|++++|+..++++ ...|.+...|..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444556667777777777777766 334 3566667777777788888888777776 2232456777888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 038516 601 KRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 601 ~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
.|++++|...++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888764
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=3.4e-06 Score=73.36 Aligned_cols=80 Identities=16% Similarity=0.067 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG-TTHILLSNLY 632 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 632 (708)
...|..++.+|.+.|++++|+..++++ ...+.+...|..++.++...|++++|...++++++++|+++ .+...+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456888889999999999999999887 33435688899999999999999999999999999999998 5565665554
Q ss_pred Hh
Q 038516 633 AA 634 (708)
Q Consensus 633 ~~ 634 (708)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=5.5e-07 Score=72.51 Aligned_cols=94 Identities=14% Similarity=0.011 Sum_probs=79.8
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 038516 554 GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHI 626 (708)
Q Consensus 554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 626 (708)
+...+..++..+.+.|++++|.+.++++ ...+.+...|..++.++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566778889999999999999999887 3333468889999999999999999999999999999999 77888
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 038516 627 LLSNLYAATGRWDCVAKMRRK 647 (708)
Q Consensus 627 ~l~~~~~~~g~~~eA~~~~~~ 647 (708)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988887765543
No 186
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=8.8e-06 Score=67.20 Aligned_cols=60 Identities=10% Similarity=-0.004 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKE 548 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 548 (708)
.+..+...+.+.|++++|+..|++.++. .|+ ...|..+..+|...|++++|++.+++.++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666667777777777777777663 443 44455566666666666666666666654
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.21 E-value=1.1e-05 Score=66.84 Aligned_cols=104 Identities=12% Similarity=0.016 Sum_probs=70.3
Q ss_pred HHHHHhccCcHHHHHHHHHHhhHCCCCcC-h---HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCC---HHHHHHHHHH
Q 038516 526 LLSACSHSGLVERGKILWNQMKEHSLIPG-H---KHYSCMVSLLSRAGLLDEAENLIAESPY-SEIR---IELWRTLLST 597 (708)
Q Consensus 526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~~ 597 (708)
+...+...|++++|...|+.+.+. .|+ . ..+..++.++.+.|++++|...++++.. .+.+ +..+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 334455666666666666666552 122 1 3566677777778888888877777621 1122 5667778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038516 598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL 631 (708)
Q Consensus 598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 631 (708)
+...|+.++|...++++++..|+++........+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8889999999999999999999887655544443
No 188
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=0.00019 Score=69.32 Aligned_cols=180 Identities=9% Similarity=0.032 Sum_probs=112.2
Q ss_pred HHHHHHHHhhCC---CCChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHHHHHH
Q 038516 470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYG--MAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGL-VERGKILW 543 (708)
Q Consensus 470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 543 (708)
+++++.+++.+. +.+..+|+.-...+...| ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555553 345666666666666666 3677777777777742 2255556655555556666 57777777
Q ss_pred HHhhHCCCCcChHHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc-------
Q 038516 544 NQMKEHSLIPGHKHYSCMVSLLSRA--------------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK------- 601 (708)
Q Consensus 544 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~------- 601 (708)
+.+++.. +-+...|+....++.+. +.+++++++++++ ...|.+...|..+.+.+...
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 7777632 22355566555555544 4567777777776 23334677777766666554
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH---hcCCchHHHHHHHHHhcC
Q 038516 602 ----RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA---ATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 602 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~eA~~~~~~~~~~ 651 (708)
+.++++++.++++++++|++.-.+..++.+.. ..|..++....+.++.+-
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45788889999999999988554444433222 356777888888877653
No 189
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=1e-05 Score=64.77 Aligned_cols=101 Identities=9% Similarity=-0.076 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--CHHHHHHHHHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEI--RIELWRTLLST 597 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~~~ 597 (708)
..+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|.+.++++ ...+. +...|..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 334445555666666666666666665521 123455666677777777777777777666 22223 56777777778
Q ss_pred HHhc-CCHHHHHHHHHHHHhcCCCCc
Q 038516 598 CVAK-RNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 598 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 622 (708)
+... |+.++|.+.++++++..|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888888888764
No 190
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=1.3e-05 Score=66.29 Aligned_cols=77 Identities=5% Similarity=-0.018 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL 628 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 628 (708)
.+..++..+...|++++|...++++ +..+++ ...+..++..+...|++++|...++++++..| ++.....+
T Consensus 40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l 118 (131)
T 1elr_A 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3344444444444444444444443 111112 55666777777788888888888888888877 45556666
Q ss_pred HHHHHh
Q 038516 629 SNLYAA 634 (708)
Q Consensus 629 ~~~~~~ 634 (708)
+.++..
T Consensus 119 ~~~~~~ 124 (131)
T 1elr_A 119 QQAEKI 124 (131)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.18 E-value=1.9e-05 Score=81.47 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=84.9
Q ss_pred HHHhcCCHHHHHHHHHhC-----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHH
Q 038516 564 LLSRAGLLDEAENLIAES-----PYSE---I-RIELWRTLLSTCVAKRNSRMVIQAAEQVLR-----LDPEDG---TTHI 626 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-----~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~ 626 (708)
.+..+|++++|+.+++++ ..-+ | -..+++.|+..|...|++++|+.+++++++ +.|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355677777777776654 1111 1 244577777888888888888888888875 345554 4588
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhc
Q 038516 627 LLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDE 702 (708)
Q Consensus 627 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 702 (708)
.||.+|..+|++++|..+++++.+--. + ..| ..||...++...+.+...++++.+.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-V----------------THG-PSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-H----------------HTC-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-H----------------HhC-CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998754100 0 011 249999999999988887777765443
No 192
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.18 E-value=0.0003 Score=67.85 Aligned_cols=193 Identities=9% Similarity=0.028 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC--CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCC-hHHHHHHH
Q 038516 435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG--DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGM-AEEAFMVF 508 (708)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~ 508 (708)
++++..++..+...+ +-+..+++.-..++.+.| .+++++.+++.+. +.|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777776654 445566665555566666 4889999998885 4678888888888888888 58999999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHhcc--------------CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc-----
Q 038516 509 EVILEHGLRPDEITFLSLLSACSHS--------------GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA----- 568 (708)
Q Consensus 509 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~----- 568 (708)
+++++.. .-|...|+.....+.+. +.++++++++...+. ..|+ ...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 9999863 22566666655544443 568889999998887 4564 56666665566555
Q ss_pred ------CCHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516 569 ------GLLDEAENLIAESPYSEIRIELWRTLLSTC-----VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY 632 (708)
Q Consensus 569 ------g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 632 (708)
+.++++++.++++....|+. .|..+..+. ...+..++....+.++.+++|-..+.|..+..-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 46788999888883332443 444333222 2367888999999999999999988888776543
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.16 E-value=4.7e-06 Score=85.92 Aligned_cols=123 Identities=12% Similarity=-0.043 Sum_probs=89.8
Q ss_pred HhccCcHHHHHHHHHHhhHC---CC---CcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCC-HHHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEH---SL---IPG-HKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIR-IELWRT 593 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~---~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~-~~~~~~ 593 (708)
+...|++++|+.++++..+. -+ .|+ ..+++.|+.+|...|++++|+.+++++ +..-|+ ...++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666543 11 222 456778888888888888888877665 222122 445788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLR-----LDPEDGTT---HILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
|+..|...|++++|+.+++++++ +.|+++.+ ...|..++.++|++++|..+++++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999998886 46777654 5588889999999999999999987754
No 194
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.15 E-value=2.1e-05 Score=60.20 Aligned_cols=69 Identities=16% Similarity=0.047 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 585 EIRIELWRTLLSTCVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 585 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+.++..+..+..++...++ .++|...++++++++|+++.++..+|..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4678888888888765554 79999999999999999999999999999999999999999999988654
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.15 E-value=8.7e-06 Score=63.87 Aligned_cols=66 Identities=17% Similarity=0.074 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.++..|..++..+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 468889999999999999999999999999999999999999999999999999999999987653
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=2.7e-06 Score=84.20 Aligned_cols=115 Identities=9% Similarity=-0.019 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 038516 520 EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV 599 (708)
Q Consensus 520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 599 (708)
...+..+...+.+.|++++|...|++..+ +.|+.. .+...|+++++...+. ..+|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~-------~~~~~~~~~~~~~~l~--------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDF-------MFQLYGKYQDMALAVK--------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHH-------HHTCCHHHHHHHHHHH--------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccch-------hhhhcccHHHHHHHHH--------HHHHHHHHHHHH
Confidence 34466666777888888888888888776 334322 1233444455444332 237888889999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..|++++|+..++++++++|++..+|..++.+|...|++++|...++++.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988654
No 197
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=1.4e-05 Score=69.15 Aligned_cols=133 Identities=14% Similarity=0.015 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChH
Q 038516 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLR-PDE----ITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHK 556 (708)
Q Consensus 487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~ 556 (708)
++..+...+...|++++|+..+++..+.... ++. ..+..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666667777777666666542100 111 24555666677777777777777776543 1111 144
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC----CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516 557 HYSCMVSLLSRAGLLDEAENLIAES----PYS---EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 619 (708)
.+..++..+...|++++|.+.++++ ... ......+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5667778888888888888877765 111 01234566777778889999999999998887643
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=1.4e-05 Score=61.30 Aligned_cols=82 Identities=18% Similarity=0.237 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA 633 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 633 (708)
...+..++..+...|++++|...++++ ...+.+...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456777888888889999998888877 2232467788888889999999999999999999999999999999998887
Q ss_pred hcC
Q 038516 634 ATG 636 (708)
Q Consensus 634 ~~g 636 (708)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.09 E-value=9.6e-06 Score=65.62 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=67.9
Q ss_pred HHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 573 EAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 573 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+|.+.++++ ...+.+...|..++..+...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666665 3343568889999999999999999999999999999999999999999999999999999999988653
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.07 E-value=1.8e-06 Score=72.46 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516 567 RAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRN----------SRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635 (708)
Q Consensus 567 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 635 (708)
+.+.+++|.+.+++. ...|.+...|..+..++...++ +++|+..++++++++|++..+|..+|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445556666666555 2232356666666666555544 56999999999999999999999999999988
Q ss_pred C-----------CchHHHHHHHHHhcCC
Q 038516 636 G-----------RWDCVAKMRRKMKGSM 652 (708)
Q Consensus 636 g-----------~~~eA~~~~~~~~~~~ 652 (708)
| ++++|++.|+++.+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999987753
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.3e-05 Score=61.74 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++...|..++..+...|++++|...++++++++|+++.++..++.+|...|++++|++.++++.+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999999998765
No 202
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=6.7e-05 Score=77.29 Aligned_cols=158 Identities=14% Similarity=0.063 Sum_probs=117.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcCh
Q 038516 493 GGYSHYGMAEEAFMVFEVILEHGLRPD----------------EITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGH 555 (708)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~ 555 (708)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+. +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 456677888999998888887522111 023677888999999999999999988764 222221
Q ss_pred ----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------
Q 038516 556 ----KHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD------ 618 (708)
Q Consensus 556 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------ 618 (708)
.+.+.+...+...|++++|..+++.. ........++..++..+...|++++|...+++++...
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23445556666789999999988775 2221236678889999999999999999999988642
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
|....++..++++|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23345688999999999999999999988754
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.93 E-value=0.0001 Score=61.74 Aligned_cols=110 Identities=11% Similarity=-0.113 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038516 535 LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQA 610 (708)
Q Consensus 535 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 610 (708)
++++|.++|++..+.| .|+.. |...|...+..++|.++++++... .++..+..+...|.. .+|.++|...
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 3444455555444433 11111 444444444455555555554322 344555555555554 5566666666
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhcCC
Q 038516 611 AEQVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 611 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~ 652 (708)
++++.+. .++..+..|+.+|.. .+++++|.+++++..+.|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666655 455666677777766 667777777777666554
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.92 E-value=5.5e-05 Score=76.78 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=78.0
Q ss_pred HHHhcCCHHHHHHHHHhC-----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHH
Q 038516 564 LLSRAGLLDEAENLIAES-----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLR-----LDPEDG---TTHI 626 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~-----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~ 626 (708)
.+.+.|++++|+.+++++ ..-+++ ..+++.++..|...|++++|+.+++++++ +.|+++ ..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344556666666666554 111111 34566677777777888888887777775 345544 4588
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 038516 627 LLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMR 696 (708)
Q Consensus 627 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 696 (708)
.|+.+|..+|++++|..+++++.+- ..+. .| ..||...+++..|.+...+|+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i-~~~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDI-MRVT----------------HG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-HHHH----------------TC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-HHHh----------------cC-CCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887541 0000 11 249999999999999888776
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00018 Score=76.20 Aligned_cols=148 Identities=12% Similarity=0.018 Sum_probs=121.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCc----------HHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHH
Q 038516 499 GMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHSGL----------VERGKILWNQMKEHSLIP-GHKHYSCMVSLLS 566 (708)
Q Consensus 499 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 566 (708)
...++|++.+++++.. .|+. ..|+.--.++...|+ ++++++.++.+.+ ..| +..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3456889999999994 7765 446665556666666 9999999999987 344 4677888888899
Q ss_pred hcC--CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-------
Q 038516 567 RAG--LLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR-NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT------- 635 (708)
Q Consensus 567 ~~g--~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 635 (708)
+.| ++++++++++++ ...+.+...|..-.......| ..+++.+.++++++.+|++.++|...+.++...
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 334357899999999999988 899999999999999999999999999998885
Q ss_pred -------CCchHHHHHHHHHhc
Q 038516 636 -------GRWDCVAKMRRKMKG 650 (708)
Q Consensus 636 -------g~~~eA~~~~~~~~~ 650 (708)
+++++|.+.++++..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 557888888877654
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.79 E-value=0.0001 Score=56.25 Aligned_cols=65 Identities=22% Similarity=0.303 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888889999999999999999999999999999999999999999999999999988764
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.79 E-value=5.9e-05 Score=76.38 Aligned_cols=84 Identities=14% Similarity=0.238 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCcee
Q 038516 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLR-----LDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLS 660 (708)
Q Consensus 589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~ 660 (708)
.+++.++.+|...|++++|+.+++++++ +.|+++ ..+..||.+|..+|++++|..+++++.+--. +.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~---- 415 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VA---- 415 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HH----
Confidence 4466666677777777777777777765 344444 4588999999999999999999998754100 00
Q ss_pred EEEecCeEEEEEeCCCCCcchHHHHHHHHH
Q 038516 661 WIEAKNNVHVFSSGDQSHPKIDDAQAELHR 690 (708)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 690 (708)
.| ..||...++...|++
T Consensus 416 ------------lG-~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 416 ------------HG-KDHPYISEIKQEIES 432 (433)
T ss_dssp ------------TC-TTCHHHHHHHHHHHC
T ss_pred ------------cC-CCChHHHHHHHHHhc
Confidence 11 249999998887753
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.76 E-value=3.5e-05 Score=64.68 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=57.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH----------HHHHHHHHHhhHCCCCcC-hHHHHHHHH
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLV----------ERGKILWNQMKEHSLIPG-HKHYSCMVS 563 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~p~-~~~~~~l~~ 563 (708)
.+.+.+++|++.+++..+. .| +...|..+..++...+++ ++|+..|++.++ +.|+ ...|..++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence 3445566666666666663 34 344455555555555443 244444444443 3332 333444444
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 564 LLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 564 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
+|...|.+ . |+.. ...|++++|+..|+++++++|++.....
T Consensus 89 ay~~lg~l------------~-P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 89 AYTSFAFL------------T-PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHH------------C-CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhccc------------C-cchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44433332 1 2211 0126899999999999999999865433
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.66 E-value=0.00063 Score=56.76 Aligned_cols=112 Identities=11% Similarity=-0.049 Sum_probs=92.5
Q ss_pred CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHH
Q 038516 499 GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEA 574 (708)
Q Consensus 499 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 574 (708)
+++++|+++|++..+.| .|+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46889999999999987 44444 6667778888999999999998864 45677778888888 8899999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 038516 575 ENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDP 619 (708)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 619 (708)
.++++++... .++..+..|...|.. .+|.++|...++++.+...
T Consensus 81 ~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999998554 678888888888888 8899999999999988743
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=8.2e-06 Score=79.91 Aligned_cols=237 Identities=11% Similarity=0.115 Sum_probs=154.0
Q ss_pred CcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhc
Q 038516 47 SPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVS 126 (708)
Q Consensus 47 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 126 (708)
.+.+|+.|..+..+.|++.+|++.|-+.. |+..|..+|.+..+.|. +++-+..+...++..- ++..=+.|+-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~-~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGN-WEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSC-CTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 56789999999999999999988875444 66678899999999999 9998888887776533 3444567888999
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC------------------------CCcc
Q 038516 127 LLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD------------------------KDAV 182 (708)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 182 (708)
+.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 8888766554432 36665666667777777777777777765542 3566
Q ss_pred cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcc
Q 038516 183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYS 262 (708)
Q Consensus 183 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 262 (708)
+|-.+-.+|...+.+.-|.-.--.+.- .|+ ....++..|-..|.+++-..+++..+.. -.....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 777777777777777766544333321 121 2233455566677777766666655421 1335566777777776
Q ss_pred cCCChHHHHHHHhccCC----C-------ChhHHHHHHHHHHcCCCchHHH
Q 038516 263 KCSDTQTAFSVFTRIEN----P-------DLVSWNSMIAGYMENGNGEKAV 302 (708)
Q Consensus 263 ~~g~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~ 302 (708)
+- +.++.++.++..-. | ....|..++-.|.+-.+++.|.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65 34444444433221 2 2345666666666666666554
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.56 E-value=5.3e-05 Score=74.35 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=162.6
Q ss_pred CchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHh
Q 038516 148 EDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACS 227 (708)
Q Consensus 148 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 227 (708)
..+.+|+.|..+..+.|.+.+|++.|- +..|+..|..+|.+..+.|.+++-+..+...++..-.|. .=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence 346678888888888888888876653 345667788899999999999998888877766544443 3457888888
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC------------------------CChh
Q 038516 228 RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN------------------------PDLV 283 (708)
Q Consensus 228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~ 283 (708)
+.+++.+-++.+ -.||..-.....+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888776544333 134554455555555666666666555554431 5778
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHH
Q 038516 284 SWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMY 363 (708)
Q Consensus 284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 363 (708)
+|..+-.+|...+.+.-|.-.--.+.-. || .+..++..|...|-+++-..+++.-.... .....+++-|.-.|
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 8999999999999988776555444322 22 22345566888899999888888765221 45677888888888
Q ss_pred HhcCCChhHHHHHhhcCCC-----------CEeeehhhHHHHhcCCChHHHHH
Q 038516 364 FKNGDAESPQKVFMLIAEK-----------DIVLWTEMIIGHSRMGDGECAIK 405 (708)
Q Consensus 364 ~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~ 405 (708)
+|- ++++..+.++....+ ....|..++-.|.+-.+++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 875 677777776655442 33567777777777777776643
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.53 E-value=0.00043 Score=57.35 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 586 IRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLD-P-EDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
++..+.-.+.+++.+++ +.++++.+++.+++.+ | ++...+..|+-.|.+.|+|++|++.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 45556566666666655 4556666666666666 5 3455666666666666666666666666654
No 213
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00036 Score=56.08 Aligned_cols=83 Identities=13% Similarity=-0.013 Sum_probs=58.9
Q ss_pred HHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038516 538 RGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVL 615 (708)
Q Consensus 538 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 615 (708)
+|+..|++..+ ..| +...+..++..|...|++++|...++++ ...+.+...|..++.++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666654 233 3566777777888888888888887776 2232457778888888888888888888888888
Q ss_pred hcCCCCc
Q 038516 616 RLDPEDG 622 (708)
Q Consensus 616 ~~~p~~~ 622 (708)
++.|++.
T Consensus 81 ~~~~~~~ 87 (115)
T 2kat_A 81 AAAQSRG 87 (115)
T ss_dssp HHHHHHT
T ss_pred Hhccccc
Confidence 8877543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.48 E-value=0.00043 Score=53.77 Aligned_cols=65 Identities=9% Similarity=0.151 Sum_probs=40.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516 561 MVSLLSRAGLLDEAENLIAES-PYSEIRIE-LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 561 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
.+..+.+.|++++|...++++ ...+.+.. .|..++.++...|++++|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345566666777776666665 22213445 666666666666777777777777777776666554
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.43 E-value=0.0013 Score=63.52 Aligned_cols=144 Identities=13% Similarity=0.033 Sum_probs=76.9
Q ss_pred CCCChHHHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516 481 LHPDLKCWNALLGGYS--HYGM---AEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG 554 (708)
Q Consensus 481 ~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 554 (708)
.+.+...|...+++.. ..++ ..+|..+|++.++. .|+. ..+..+..++... . .. +. .+
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~----------~--~~-~~-~~ 253 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVR----------H--SQ-HP-LD 253 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH----------H--HH-SC-CC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH----------h--cc-CC-Cc
Confidence 3456677777776543 3333 46788888888884 6764 3444444343300 0 00 00 00
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA 634 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 634 (708)
..... ....|.+-...+...+.++.++..+...+...|++++|...++++++++|+ ...|..+|+++.-
T Consensus 254 ~~~~~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 254 EKQLA----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp HHHHH----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred hhhHH----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 00000 012222222233333345666666655555567777777777777777653 4455666777777
Q ss_pred cCCchHHHHHHHHHhcC
Q 038516 635 TGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 635 ~g~~~eA~~~~~~~~~~ 651 (708)
.|++++|.+.++++...
T Consensus 323 ~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 323 KGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 77777777777666554
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.41 E-value=0.0052 Score=59.45 Aligned_cols=146 Identities=14% Similarity=0.026 Sum_probs=93.8
Q ss_pred CCCchhHHHHHHHhhH--hcC---CHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-h
Q 038516 450 HGVEMSVCGSLVDMYA--KNG---DLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-E 520 (708)
Q Consensus 450 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~ 520 (708)
.+.+...|..++.+.. ..+ ...+|..+|++.+ .|+ ...|..+.-+|.. .... .|. .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-------------~~~~--~~~~~ 254 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-------------RHSQ--HPLDE 254 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------HHHH--SCCCH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------Hhcc--CCCch
Confidence 4667788888776654 233 3578999999886 454 4455554444440 0111 111 1
Q ss_pred HHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 038516 521 ITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV 599 (708)
Q Consensus 521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 599 (708)
..... ...+.+ ..... ..+.+...|..+...+...|++++|...++++...+|+...|..+...+.
T Consensus 255 ~~~~~----------l~~a~~---a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~ 321 (372)
T 3ly7_A 255 KQLAA----------LNTEID---NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE 321 (372)
T ss_dssp HHHHH----------HHHHHH---HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred hhHHH----------HHHHHH---HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 11110 012222 11111 22445777888877777789999999999998444477777777788888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
..|+.++|...+++++.++|..+.
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcCh
Confidence 899999999999999999998754
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.31 E-value=0.00097 Score=51.66 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHhccCcHHHHHHHHHHhhHCCCCcC-hH-HHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 529 ACSHSGLVERGKILWNQMKEHSLIPG-HK-HYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 529 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
.+...|++++|...++++.+. .|+ .. .+..++.+|...|++++|.+.++++
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555542 222 33 4455555555555555555555554
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.16 E-value=0.0017 Score=65.76 Aligned_cols=93 Identities=9% Similarity=-0.031 Sum_probs=64.5
Q ss_pred ccCcHHHHHHHHHHhhHC---CCC---cC-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCC-HHHHHHHH
Q 038516 532 HSGLVERGKILWNQMKEH---SLI---PG-HKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIR-IELWRTLL 595 (708)
Q Consensus 532 ~~~~~~~a~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~-~~~~~~l~ 595 (708)
..|++++|+.++++..+. -+. |+ ..+++.|+.+|...|++++|+.+++++ +..-|+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777766542 122 22 456778888888888888888887775 211132 44578888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCcch
Q 038516 596 STCVAKRNSRMVIQAAEQVLR-----LDPEDGTT 624 (708)
Q Consensus 596 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 624 (708)
..|...|++++|+.+++++++ +.|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 888999999999999998886 45776654
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.08 E-value=0.0036 Score=63.43 Aligned_cols=97 Identities=12% Similarity=-0.043 Sum_probs=63.3
Q ss_pred HhccCcHHHHHHHHHHhhHC---CCCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCC-HHHHHH
Q 038516 530 CSHSGLVERGKILWNQMKEH---SLIPG----HKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIR-IELWRT 593 (708)
Q Consensus 530 ~~~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~-~~~~~~ 593 (708)
+.+.|++++|+.++++..+. -+.|+ ..+++.|+.+|...|++++|+.+++++ +..-|+ ...++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44556667777776666543 11121 456777777777788888877777665 221122 345777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHH
Q 038516 594 LLSTCVAKRNSRMVIQAAEQVLR-----LDPEDGTTHI 626 (708)
Q Consensus 594 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 626 (708)
|+..|...|++++|+.+++++++ +.|+++.+-.
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88888888888888888888876 4677766543
No 220
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.06 E-value=0.0025 Score=49.45 Aligned_cols=63 Identities=21% Similarity=0.089 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516 484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKE 548 (708)
Q Consensus 484 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 548 (708)
+...|..+...|...|++++|+..|+++++. .| +...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566677777777777777777777777774 34 345566666677777777777777777665
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.94 E-value=0.0057 Score=47.78 Aligned_cols=75 Identities=11% Similarity=0.070 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC-----C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES-----P---YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 626 (708)
..-...|+..+.+.|+++.|...++.+ + ...+...++..+..++.+.|+++.|...++++++++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334455677777777777777777665 1 11245778999999999999999999999999999999988755
Q ss_pred HHH
Q 038516 627 LLS 629 (708)
Q Consensus 627 ~l~ 629 (708)
.+.
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.83 E-value=0.1 Score=41.33 Aligned_cols=141 Identities=9% Similarity=-0.010 Sum_probs=101.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516 495 YSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 574 (708)
+.-.|..++..++..+.... .+..-+++++--....-+-+-..+.++.+-+- -| ...+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 34568888888888888773 35556777766666666666666666666442 11 2245566666
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516 575 ENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLG 654 (708)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 654 (708)
...+-.+. .+.+..+..+.....+|+-+.-..++..++.-+|-+++....++.+|.+.|+..+|.+++.++.++|++
T Consensus 81 i~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 66555554 245566777788888999999999988877777777889999999999999999999999999988874
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.75 E-value=0.0052 Score=50.90 Aligned_cols=91 Identities=9% Similarity=-0.023 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 038516 535 LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG---LLDEAENLIAESPYSE-I--RIELWRTLLSTCVAKRNSRMVI 608 (708)
Q Consensus 535 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~ 608 (708)
....+.+-|.+..+.+. ++..+...+..++.+.+ +.+++..++++.-... | ..+.+-.+.-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555555544333 55666666667777766 4556776666652221 3 3566777778889999999999
Q ss_pred HHHHHHHhcCCCCcchHH
Q 038516 609 QAAEQVLRLDPEDGTTHI 626 (708)
Q Consensus 609 ~~~~~~~~~~p~~~~~~~ 626 (708)
+.++++++.+|++..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999999999866443
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.75 E-value=0.0034 Score=58.02 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=68.6
Q ss_pred HHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CCchH
Q 038516 571 LDEAENLIAESPYSEIR---IELWRTLLSTCVA-----KRNSRMVIQAAEQVLRLDPED-GTTHILLSNLYAAT-GRWDC 640 (708)
Q Consensus 571 ~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~e 640 (708)
..+|...++++....|+ ...|..++..|.. -|+.++|++.|+++++++|+. ..++...++.++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34566666665222244 5577888777777 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHhcCCCccCCc
Q 038516 641 VAKMRRKMKGSMLGKEPG 658 (708)
Q Consensus 641 A~~~~~~~~~~~~~~~~~ 658 (708)
|.+.+++..+..++..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876654444
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.50 E-value=0.012 Score=46.76 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=29.3
Q ss_pred cChHHHHHHHHHHHhcCCHHH---HHHHHHhCCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 553 PGHKHYSCMVSLLSRAGLLDE---AENLIAESPYSE-I--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
|+..+-..++.++.+..+..+ +..++++.-... | ....+-.+.-++.+.|++++|.+.++.+++.+|+|.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence 344444444444554444333 444444432221 1 122233333344444444444444444444444443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.47 E-value=0.022 Score=44.38 Aligned_cols=65 Identities=17% Similarity=-0.015 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD-------PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
++...-.++..+...|+++.|..-++++++.. +..+.++..|+.+|.+.|++++|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678888999999999999999999853 334567899999999999999999999988764
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.29 E-value=0.03 Score=42.40 Aligned_cols=71 Identities=8% Similarity=-0.018 Sum_probs=55.4
Q ss_pred cChHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 553 PGHKHYSCMVSLLSRAGL---LDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 553 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
.+...+..++.++...++ .++|..+++++ ...|.+...+..++..+...|++++|...++++++.+|.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 456777777777765544 68999999887 334346778888888899999999999999999999998433
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.17 E-value=1.2 Score=47.00 Aligned_cols=124 Identities=9% Similarity=-0.020 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHHHHCCCCCChHH----HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516 499 GMAEEAFMVFEVILEHGLRPDEIT----FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA 574 (708)
Q Consensus 499 g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 574 (708)
.+.+.|...|......+ ..+... ...+.......+...++...+....... ++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 48899999999887643 223322 2223334444553556666666655432 3333344555566688999999
Q ss_pred HHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516 575 ENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS 629 (708)
Q Consensus 575 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 629 (708)
...|+.++.... .....--+..+....|+.++|...++++.+ + .+.|-.|+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 999999976522 233333445566778999999999999875 3 24455553
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.15 E-value=0.04 Score=43.87 Aligned_cols=88 Identities=7% Similarity=0.018 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeE
Q 038516 586 IRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLDPE-DGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSW 661 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 661 (708)
|++.+--.+.+++.++. +..+++.+++.+++.+|. ....+..|+-.+.+.|+|++|++..+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~---------- 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH---------- 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----------
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----------
Confidence 56666666666666644 455788888888887774 3556778888888888888888888888763
Q ss_pred EEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhh
Q 038516 662 IEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLV 699 (708)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 699 (708)
.|.+.++......+..+|.+.+
T Consensus 108 ----------------eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 108 ----------------ERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHHHhhc
Confidence 5666666666666666666544
No 230
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.06 E-value=0.13 Score=41.56 Aligned_cols=65 Identities=6% Similarity=0.028 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 586 IRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLDPE-DGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 586 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
++..+--.+.+++.++. +..+++.+++.++..+|. .......|+-.+.+.|+|++|+++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444433 334455555555555553 223344555555555555555555555544
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.04 E-value=0.064 Score=42.62 Aligned_cols=83 Identities=8% Similarity=-0.052 Sum_probs=49.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH---HHHHHHHhhHCCCCc--ChHHHHHHHHHHHhcCCH
Q 038516 497 HYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVER---GKILWNQMKEHSLIP--GHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 497 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 571 (708)
.......+.+-|.+....|. |+..+-..+..++.++..... ++.+++.+.+.+ .| .....-.|+-++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33344555555665555443 555555555666666665444 777777776642 23 344455566777777777
Q ss_pred HHHHHHHHhC
Q 038516 572 DEAENLIAES 581 (708)
Q Consensus 572 ~~A~~~~~~~ 581 (708)
++|.++++.+
T Consensus 91 ~~A~~~~~~l 100 (126)
T 1nzn_A 91 EKALKYVRGL 100 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777776
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.022 Score=61.06 Aligned_cols=59 Identities=7% Similarity=0.024 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
.+..-...|...|+++.|+.+.++++...|.+-.+|..|+.+|...|+|+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34444556778999999999999999999999999999999999999999999998877
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.87 E-value=0.18 Score=56.35 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=94.3
Q ss_pred HhcCCChHHHHH-HHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516 394 HSRMGDGECAIK-LFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA 472 (708)
Q Consensus 394 ~~~~~~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 472 (708)
....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.. . .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHH
Confidence 345677777766 44211 11222255666667777777777665311 1 11234567899999
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516 473 AESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI 552 (708)
Q Consensus 473 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 552 (708)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|.
T Consensus 671 A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~- 738 (814)
T 3mkq_A 671 ARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK- 738 (814)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 99998776 4568899999999999999999999998753 22334444446666655555544444331
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 553 PGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
++.-..+|.+.|++++|.+++.++
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233334455667777776666554
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.36 Score=41.02 Aligned_cols=127 Identities=18% Similarity=0.115 Sum_probs=78.7
Q ss_pred hhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 038516 463 MYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL 542 (708)
Q Consensus 463 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 542 (708)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+...++
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 344678888888877665 4667888888888888888888888877543 23344445556776666655
Q ss_pred HHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516 543 WNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ 613 (708)
Q Consensus 543 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 613 (708)
-+.....|- ++.-...+.-.|+++++.+++.+.... |. -......+|-.+.|.++.+.
T Consensus 83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~-~e------A~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSL-PL------AYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCH-HH------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCCh-HH------HHHHHHHcCcHHHHHHHHHH
Confidence 555544332 344445566778888888888776432 11 11112335666666666554
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.34 E-value=0.021 Score=52.85 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhHCCCCcC---hHHHHHHHHHHHhc-----CCHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHh-cCCH
Q 038516 536 VERGKILWNQMKEHSLIPG---HKHYSCMVSLLSRA-----GLLDEAENLIAESPYSEI--RIELWRTLLSTCVA-KRNS 604 (708)
Q Consensus 536 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~ 604 (708)
...|...+++.++ +.|+ ...|..|+..|... |+.++|.+.|+++....| +...+......+.. .|+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4455555555555 4454 34566666666663 677777777777622223 25555555555555 4777
Q ss_pred HHHHHHHHHHHhcCCCC
Q 038516 605 RMVIQAAEQVLRLDPED 621 (708)
Q Consensus 605 ~~a~~~~~~~~~~~p~~ 621 (708)
++|.+.+++++..+|..
T Consensus 257 ~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 257 AGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 78888888888777763
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.28 E-value=0.11 Score=58.06 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=12.6
Q ss_pred HHHHHHHHhcCCchHHHHHHH
Q 038516 626 ILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 626 ~~l~~~~~~~g~~~eA~~~~~ 646 (708)
....++|.+.|+|++|..+.+
T Consensus 753 ~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 753 QGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHH
Confidence 344455666667777766555
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.06 E-value=8.8 Score=42.29 Aligned_cols=255 Identities=12% Similarity=0.023 Sum_probs=133.1
Q ss_pred cccCCChHHHHHHHhccCC----CCh--hHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CC-----CCHhHHHHHHHHH
Q 038516 261 YSKCSDTQTAFSVFTRIEN----PDL--VSWNSMIAGYMENGNGEKAVDMFVALRRMSL-LK-----PDEYTFAAIISAT 328 (708)
Q Consensus 261 ~~~~g~~~~a~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~-----p~~~t~~~ll~~~ 328 (708)
....|+.++++.+++.... .+. ..-..+.-+....|..+++..++........ +. +....-..+--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566788888888877653 222 2223344456666766678887777665411 00 1112222333333
Q ss_pred cCCCCc-cchHHHHHHHHHHCCCCch--hHHhHHHHHHHhcCCChhHHHHHhhcCCC-C--EeeehhhHHHHhcCCChHH
Q 038516 329 SALPAS-AYGKPLHALVIKTGYDSSV--FVGTTLLNMYFKNGDAESPQKVFMLIAEK-D--IVLWTEMIIGHSRMGDGEC 402 (708)
Q Consensus 329 ~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~~~~~~ 402 (708)
+..|.- +++...+..++...- ... ...-+|...+.-.|+.+....++..+.+. + +.-.-.+.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 333332 244444444443221 111 11123333344556666666666654332 1 1122234445557788888
Q ss_pred HHHHHHHHhHCCCccCHHHHH---HHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhh
Q 038516 403 AIKLFCKMCREGLKCDNFALS---GALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQ 479 (708)
Q Consensus 403 A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 479 (708)
+..+++.+.... .|. .-|. .+.-+|+..|+.....+++..+.... ..+.+-...+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888776531 222 2222 34456788899888887888777542 23344333444445556766667777765
Q ss_pred CC-CCChHHH--HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCChHH
Q 038516 480 VL-HPDLKCW--NALLGGYSHYGMA-EEAFMVFEVILEHGLRPDEIT 522 (708)
Q Consensus 480 ~~-~~~~~~~--~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~ 522 (708)
+. ..|..+- ..+.-+....|+. .+++.++..+.. .+|..+
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 54 2343333 3333344445544 578888888875 445444
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.54 E-value=1.1 Score=36.64 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=69.0
Q ss_pred CCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516 482 HPDLKCWNALLGGYSHYGMA------EEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPG 554 (708)
Q Consensus 482 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 554 (708)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+... +...+..+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr---------------------- 66 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR---------------------- 66 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH----------------------
Confidence 45677888877777777888 7777888888775 5665311 1111111110
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAES--PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT 624 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 624 (708)
|. .+...++.++|.++|+.+ ..+ .-..+|......-.++|+++.|.+++.+++.+.|.....
T Consensus 67 ---YA----~~~ei~D~d~aR~vy~~a~~~hK-kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 67 ---FA----ELKAIQEPDDARDYFQMARANCK-KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp ---HH----HHHHHHCGGGCHHHHHHHHHHCT-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred ---HH----HHHHhcCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 10 011224555555555554 111 126677777777788999999999999999988886553
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.41 E-value=3.2 Score=35.19 Aligned_cols=127 Identities=12% Similarity=0.070 Sum_probs=86.9
Q ss_pred hCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038516 430 ADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFE 509 (708)
Q Consensus 430 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 509 (708)
...|+++.|.++.+.+ .+...|..|.+...+.|+++-|++.|..... +..+.-.|...|+.+...++-+
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence 3567777777776554 3567888899999999999999999987643 3445556667788877776666
Q ss_pred HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038516 510 VILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESP 582 (708)
Q Consensus 510 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 582 (708)
.....| -++.....+.-.|+++++.++|.+.- .-|... -.....|..+.|.++.+++.
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 666554 24445556667899999999886653 223211 12233567788888888773
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.32 E-value=0.28 Score=39.96 Aligned_cols=54 Identities=9% Similarity=-0.057 Sum_probs=46.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
..+|.++|..+|+.++.+...-+-+|...+.--.++|+...|++++.+..+.+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 458999999999999988777777788888888999999999999999887654
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.32 E-value=3.6 Score=32.84 Aligned_cols=139 Identities=9% Similarity=-0.055 Sum_probs=80.1
Q ss_pred cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHH
Q 038516 396 RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAES 475 (708)
Q Consensus 396 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 475 (708)
-.|..++..++..+...+ .+..-++.++......-+-+-..++++.+-+ ..| ...+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 356677777777766543 2344455555444444444444444333321 111 123444444444
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516 476 IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI 552 (708)
Q Consensus 476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 552 (708)
-+-.+- .+...+...+..+...|+-++-.+++..+... -+|+.....-+..+|.+.|+..+|.+++.++-+.|++
T Consensus 83 C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 83 CGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 443332 33444555667777788888888887775443 3667777777777888888888888888888777654
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.14 E-value=0.43 Score=39.83 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=62.1
Q ss_pred CCCCCChHH--HHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcC-------hHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 038516 514 HGLRPDEIT--FLSLLSACSHSGLVERGKILWNQMKEH-SLIPG-------HKHYSCMVSLLSRAGLLDEAENLIAES-- 581 (708)
Q Consensus 514 ~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 581 (708)
.|+.|.... +..-+..+...|.++.|+-+.+.+... +..|+ ..++..+++++...|++..|...|+++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455665433 444455677778888887777765543 22232 234556677777788887777777664
Q ss_pred ----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 582 ----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 582 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
..+.++. ..++. . .. ....-..+ +.+......++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~~-~---~s-------s~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG-N---SA-------STPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--ccccc-c---cC-------CCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1110111 00000 0 00 00000111 223356678999999999999999998754
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.85 E-value=1.9 Score=39.22 Aligned_cols=157 Identities=16% Similarity=0.085 Sum_probs=97.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516 493 GGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL 571 (708)
Q Consensus 493 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 571 (708)
....+.|+.++|+.....-++. .| |...-..++..+|-.|++++|.+-++...+ +.|+...-..+...+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH---
Confidence 3456778899999988888886 44 666677788889999999999998888876 455543322222222222
Q ss_pred HHHHH-HHHh--CCCC-CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 038516 572 DEAEN-LIAE--SPYS-EIRIELWRTLLSTCV--AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMR 645 (708)
Q Consensus 572 ~~A~~-~~~~--~~~~-~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 645 (708)
+...+ +|.. .|.. .........++.+.. ..|+.+.|...-.++++.-|..+.... . .-|
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~-------------~--~~F 142 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN-------------D--TSF 142 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET-------------T--EEE
T ss_pred HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC-------------C--CCc
Confidence 22221 2211 1211 123444555555544 479999999999999999888776333 1 114
Q ss_pred HHHhcCCCccCCceeEEEecCeEEEE
Q 038516 646 RKMKGSMLGKEPGLSWIEAKNNVHVF 671 (708)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (708)
+-+.+...+.-|-+..+.++|..+..
T Consensus 143 ~wi~D~D~RlGpv~E~i~~~G~Y~Wl 168 (273)
T 1zbp_A 143 SDVRDIDDRLGGYIELFSTAGNYFLV 168 (273)
T ss_dssp SCEEESSTTTTTEEEEECTTSCEEEE
T ss_pred chhhccccCCcceEEEEEeCCeEEEe
Confidence 45555666666666666555655544
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.68 E-value=5.8 Score=32.09 Aligned_cols=74 Identities=8% Similarity=-0.002 Sum_probs=51.8
Q ss_pred CcChHHHHHHHHHHHhcCCHH---HHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516 552 IPGHKHYSCMVSLLSRAGLLD---EAENLIAESPYSEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 552 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
.|+..+-..++.++.+..+.+ ++..++++.-...| ..+.+-.+.-++.+.|++++|.++.+.+++.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 456666556667777766544 45555555511112 456667777789999999999999999999999986543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.52 E-value=1.8 Score=36.08 Aligned_cols=121 Identities=13% Similarity=0.032 Sum_probs=58.5
Q ss_pred HHhhHhcCCHHHHHHHHhhCC-----CCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH-HHHHH
Q 038516 461 VDMYAKNGDLRAAESIFSQVL-----HPDL-------KCWNALLGGYSHYGMAEEAFMVFEVILEHG-LRPDEI-TFLSL 526 (708)
Q Consensus 461 ~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-~~~~l 526 (708)
+..+...|.++.|+-+.+.+. .+++ .++..+..++...|++..|...|++.++.. .-|... +...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 455556677777766665542 2331 134455566666677777777776654321 111111 11000
Q ss_pred HHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHH
Q 038516 527 LSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTL 594 (708)
Q Consensus 527 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 594 (708)
. ....... .....++.+.-.-+..+|...|++++|+.+++.+|.+.-++.+-..|
T Consensus 107 -~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L 161 (167)
T 3ffl_A 107 -G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL 161 (167)
T ss_dssp -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred -c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence 0 0000000 00122233444446777888888888888888887663444443333
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.14 E-value=4.8 Score=32.10 Aligned_cols=76 Identities=8% Similarity=-0.015 Sum_probs=49.1
Q ss_pred CCcChHHHHHHHHHHHhcCCHH---HHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516 551 LIPGHKHYSCMVSLLSRAGLLD---EAENLIAESPYSEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH 625 (708)
Q Consensus 551 ~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 625 (708)
-.|+..+--.++.++.+..+.+ ++..++++.-...| ..+.+-.+.-++.+.|++++|.+..+.+++.+|+|..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 3455555555666666666543 45555555411112 356677777788888999999999999999999876543
Q ss_pred H
Q 038516 626 I 626 (708)
Q Consensus 626 ~ 626 (708)
.
T Consensus 116 ~ 116 (134)
T 3o48_A 116 A 116 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.94 E-value=8.4 Score=38.85 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=58.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCc----c
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAESPY----SEIR---IELWRTLLSTCVAKRNSRMVIQAAEQVLR---LDPEDG----T 623 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~----~ 623 (708)
...|+..|...|++.+|.+++..++. ..+. ..++...+..|...+|+..|...+.++.. -.+.++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 34567778888888888888777621 1011 34455566677778888888888777642 122222 2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH
Q 038516 624 THILLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
.+...|.++...++|.+|.+.|..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4556777777788888887766655
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.17 E-value=0.91 Score=45.08 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
...++..+...|+.+++...+++++..+|-+...|..|..+|...|+..+|.+.++.+++
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556666788888888888888888888888888888888888888888888877644
No 249
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=87.78 E-value=37 Score=37.50 Aligned_cols=261 Identities=9% Similarity=-0.035 Sum_probs=132.7
Q ss_pred HHHcCCCCccchHHHHHHHHHHC--CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC-CC----------EeeehhhHH
Q 038516 326 SATSALPASAYGKPLHALVIKTG--YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE-KD----------IVLWTEMII 392 (708)
Q Consensus 326 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~ 392 (708)
-+....|+.+++..+++.....+ -.+....-..+.-+....|.-+++...+..... .+ +..-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34667788888877776554321 112223333444445566666666666655432 12 011122333
Q ss_pred HHhcCCC-hHHHHHHHHHHhHCCCccCH--HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516 393 GHSRMGD-GECAIKLFCKMCREGLKCDN--FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD 469 (708)
Q Consensus 393 ~~~~~~~-~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 469 (708)
+++..|. -+++.+.+..+....- +.. ..-..+-..+...|+-+....++..+.+.. ..+..-...+.-++.-.|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 3333332 2456666666655321 111 111122233456677777777777766532 1122222233333445677
Q ss_pred HHHHHHHHhhCC-CCChH-HHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516 470 LRAAESIFSQVL-HPDLK-CWN---ALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN 544 (708)
Q Consensus 470 ~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 544 (708)
.+.+..+++.+. ..+.. -|. ++..+|+-.|+.....++++.+.... ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 777776666653 23322 232 23456777888877777888888741 2122222222224545566555666666
Q ss_pred HhhHCCCCcChHHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCCHHHH
Q 038516 545 QMKEHSLIPGHKHYSCMVSLLSRAGLL-DEAENLIAESPYSEIRIELW 591 (708)
Q Consensus 545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 591 (708)
.+.+. ..|....-..+.-+....|.. .+|.+.+..+... ++..+-
T Consensus 619 ~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-~d~~Vr 664 (963)
T 4ady_A 619 LLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-PVDFVR 664 (963)
T ss_dssp TGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-SSHHHH
T ss_pred HHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-CCHHHH
Confidence 55553 345555444555555555543 5777788777544 455443
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.12 E-value=7.5 Score=28.88 Aligned_cols=86 Identities=17% Similarity=0.159 Sum_probs=56.1
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555554443 22222222345668899999999999888899988877643 567888888888878877
Q ss_pred CCCCCChHHHH
Q 038516 514 HGLRPDEITFL 524 (708)
Q Consensus 514 ~g~~p~~~~~~ 524 (708)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 55555554
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.79 E-value=8 Score=28.78 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILE 513 (708)
Q Consensus 434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 513 (708)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34555555555544442 22221222344567899999999998888888888877644 466777777777777777
Q ss_pred CCCCCChHHHH
Q 038516 514 HGLRPDEITFL 524 (708)
Q Consensus 514 ~g~~p~~~~~~ 524 (708)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 55444443
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.44 E-value=4.1 Score=40.30 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHHH
Q 038516 488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHYS 559 (708)
Q Consensus 488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~ 559 (708)
...++..+...|++++|+..++.+... .| +...+..++.++...|+..+|++.|+.+.+. |+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344566777888888888888888775 44 6778888888889999999998888876542 8888766543
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.26 E-value=4.5 Score=30.03 Aligned_cols=79 Identities=10% Similarity=0.019 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHH
Q 038516 129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMV 208 (708)
Q Consensus 129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 208 (708)
...++|..+-+++...+. ...+--.-+..+...|++++|..+.+....||...|-+|-. .+.|-.+.+..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356677777777777664 44444455566788999999999999999999999988765 36788888887777777
Q ss_pred hCC
Q 038516 209 GSG 211 (708)
Q Consensus 209 ~~g 211 (708)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 765
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.04 E-value=5.5 Score=46.00 Aligned_cols=142 Identities=10% Similarity=-0.022 Sum_probs=78.3
Q ss_pred HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC----C-----------------
Q 038516 425 ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH----P----------------- 483 (708)
Q Consensus 425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----------------- 483 (708)
++..+...+..+.+.++... .+.++...-.+..+|..+|++++|...|.+... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445555555555443322 123333333456667778888888888876620 0
Q ss_pred -----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--H--HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516 484 -----DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--I--TFLSLLSACSHSGLVERGKILWNQMKEHSLIPG 554 (708)
Q Consensus 484 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~ 554 (708)
-..-|..++..+.+.|.++.++++-+..++..-.-+. . .|..++.++...|++++|-..+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 0112455666666777777777776666654211111 1 355666677777777777666666554322 2
Q ss_pred hHHHHHHHHHHHhcCCHHH
Q 038516 555 HKHYSCMVSLLSRAGLLDE 573 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~ 573 (708)
...+..|+..++..|..++
T Consensus 971 ~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHhCCChhh
Confidence 4455666666665555443
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.81 E-value=4.8 Score=29.93 Aligned_cols=79 Identities=16% Similarity=0.066 Sum_probs=58.4
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHH
Q 038516 129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMV 208 (708)
Q Consensus 129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 208 (708)
...++|..+-+++...+. ...+--.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 356677777777777664 444444555667889999999999999999999999887654 5577777777777776
Q ss_pred hCC
Q 038516 209 GSG 211 (708)
Q Consensus 209 ~~g 211 (708)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 655
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.72 E-value=28 Score=33.11 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=110.1
Q ss_pred HHHHhccCCh---HHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 038516 16 IQICASITSL---KRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRD 92 (708)
Q Consensus 16 ~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 92 (708)
++.....|++ .+|.+++. ++..=|.+.+++++|++++-. . ...+.+.
T Consensus 19 l~~~I~~G~y~~~YEAHQ~~R-------------------Ti~~Ry~~~k~y~eAidLL~~----------G-A~~ll~~ 68 (336)
T 3lpz_A 19 LQRRIAEGQPEEQYEAAQETR-------------------LVAARYSKQGNWAAAVDILAS----------V-SQTLLRS 68 (336)
T ss_dssp HHHHHHHCCHHHHHHHHHHHH-------------------HHHHHHHHTTCHHHHHHHHHH----------H-HHHHHHT
T ss_pred HHHHHhCCCCccccHHHHHHH-------------------HHHHHHHhhcCHHHHHHHHHH----------H-HHHHHHC
Confidence 4556677888 66666544 444557889999999998632 1 1234445
Q ss_pred CCChHHHHH----HHHHHHHcCCCCCcchHHHHHHHhccccch-----HHHHHHHHHHHHhC--CCCchhHHhHHHHHhH
Q 038516 93 HDHAHLTFR----LIDQMEFECLRPNGLTFTSLAQAVSLLEDQ-----LMGSLLHAQVIKYG--SSEDTCVQTSLLGMYS 161 (708)
Q Consensus 93 ~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~ 161 (708)
|. ...+-+ +++-..+.++++|......++..+.....- .-..+...|-.+.| ..-|+.....+...|.
T Consensus 69 ~Q-~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~ 147 (336)
T 3lpz_A 69 GQ-GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYV 147 (336)
T ss_dssp TC-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHH
T ss_pred CC-cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 55 444433 445566778888888888888777765531 12233344444445 3457888889999999
Q ss_pred hCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHH
Q 038516 162 NCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHAR 241 (708)
Q Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 241 (708)
+.+++.+|...|-.-..++...+..++..+...+...++--++ ...+-.|...+++..|..+++.
T Consensus 148 ~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfi---------------aRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 148 EEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYC---------------ARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp HTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHH---------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHH---------------HHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999998874322223345554444444333322221111 1122234456788888887776
Q ss_pred HHH
Q 038516 242 VII 244 (708)
Q Consensus 242 ~~~ 244 (708)
..+
T Consensus 213 f~~ 215 (336)
T 3lpz_A 213 FTS 215 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.31 E-value=35 Score=32.44 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=98.6
Q ss_pred HHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCChHHHHHHHHHHhcc
Q 038516 458 GSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVF----EVILEHGLRPDEITFLSLLSACSHS 533 (708)
Q Consensus 458 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~ 533 (708)
.++..=|.+.+++++|++++-. -...+.+.|+...|.++. +-..+.++++|.....-++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3455557788888888887643 234456667766655544 4455567788887777777766554
Q ss_pred CcHH-HHHHHHHHhhH----CC--CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516 534 GLVE-RGKILWNQMKE----HS--LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRM 606 (708)
Q Consensus 534 ~~~~-~a~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 606 (708)
..-+ .=..+.+++++ .| ..-++.....++..|.+.|++.+|+.-+= .... +++..+..++.-+...+.
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~-~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTK-ESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCT-THHHHHHHHHHHHHHTSC---
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCC-chHHHHHHHHHHHHHhcC---
Confidence 4211 11223333322 12 22356667778899999999999998873 2222 344666666655544432
Q ss_pred HHHHHHHHHhcCCCCcchHHHH-HHHHHhcCCchHHHHHHHHHhc
Q 038516 607 VIQAAEQVLRLDPEDGTTHILL-SNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 607 a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
|.....+... +--|...|+...|..+++...+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2223333322 3346778999999988777654
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.54 E-value=1.7 Score=39.64 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516 563 SLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622 (708)
Q Consensus 563 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 622 (708)
..+.+.|.+++|++.+..- ...|.|...-..+...++-.|++++|..-++.+.+++|+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3455677777777665443 44434566666666677777777777777777777777643
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.54 E-value=47 Score=33.38 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=107.5
Q ss_pred CChHHHHHHHHHHhH-----CCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH----HhhHhcC
Q 038516 398 GDGECAIKLFCKMCR-----EGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV----DMYAKNG 468 (708)
Q Consensus 398 ~~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g 468 (708)
|++.+|++.+..+.+ ............++..|...++++...+.+..+.+..-.. ......++ .......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 455566655544432 1233344556666777777777777666655554322111 11112222 2222222
Q ss_pred C--HHHHHHHHhhCC---CC-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHh
Q 038516 469 D--LRAAESIFSQVL---HP-------DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-----ITFLSLLSACS 531 (708)
Q Consensus 469 ~--~~~A~~~~~~~~---~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~ 531 (708)
. .+.-..+.+.+. .. .......|...|...|++.+|..++.++...-...+. ..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2 222223333221 10 1233456788899999999999999998753222221 34566677899
Q ss_pred ccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 532 HSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 532 ~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
..+++.+|..++.++... ...|+ ...+..++..+...++|.+|-..|.++
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999987532 22232 345777888889999999998887665
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.35 E-value=7.3 Score=29.15 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516 501 AEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV 562 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 562 (708)
.-+..+-++.+....+-|+.......+.+|.+.+++..|.++|+.++.+ ..+....|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 3345556666666667777777777777777777777777777777654 112233455444
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.23 E-value=12 Score=40.41 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 624 THILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 624 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
-|..||.+..+.+.++||.+.|+......
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~R 643 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVAR 643 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 38899999999999999999888876543
No 262
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.36 E-value=71 Score=33.61 Aligned_cols=228 Identities=14% Similarity=-0.010 Sum_probs=118.2
Q ss_pred CChHHHHHHHHHHhHCC-CccCHH--HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516 398 GDGECAIKLFCKMCREG-LKCDNF--ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE 474 (708)
Q Consensus 398 ~~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 474 (708)
.+.+.|...|....+.. ..+... ....+.......+...++...+....... .+.....-.+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 37788888888876533 222221 11222223334442445555555443322 33333444555556779999999
Q ss_pred HHHhhCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCC
Q 038516 475 SIFSQVLHPD---LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSL 551 (708)
Q Consensus 475 ~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 551 (708)
..|..|.... ..-.-=+..++...|+.++|..+|+++... . +|-.++.+ .+.|..-. +.....
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~~~~~~ 371 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------LKIDKA 371 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------CCCCCC
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------CCCCCC
Confidence 9999886422 221222455777889999999999988752 1 33333321 11221000 000000
Q ss_pred CcC-h---H--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCc
Q 038516 552 IPG-H---K--HYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD---PEDG 622 (708)
Q Consensus 552 ~p~-~---~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~ 622 (708)
.+. . . .-..-+..+...|...+|...+...... .+......+.......|..+.++....+....+ ..-+
T Consensus 372 ~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P 450 (618)
T 1qsa_A 372 PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFP 450 (618)
T ss_dssp CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSC
T ss_pred ChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCC
Confidence 010 0 0 1112345677889999998887776333 344444455555567888888877665432221 0112
Q ss_pred chHHHHHHHHHhcCCchHHH
Q 038516 623 TTHILLSNLYAATGRWDCVA 642 (708)
Q Consensus 623 ~~~~~l~~~~~~~g~~~eA~ 642 (708)
..|..+..-+.+.-..+.+.
T Consensus 451 ~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 451 LAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp CTTHHHHHHHHTTSSSCHHH
T ss_pred cchHHHHHHHHHHcCCCHHH
Confidence 23555555555555555544
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.90 E-value=27 Score=40.30 Aligned_cols=55 Identities=15% Similarity=0.019 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516 558 YSCMVSLLSRAGLLDEAENLIAES----PYSEIR--IELWRTLLSTCVAKRNSRMVIQAAE 612 (708)
Q Consensus 558 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~ 612 (708)
|..++..+.+.|.++.+.++.+.+ ....++ ...|..+..++...|++++|-.++-
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 445555555666665555554333 111111 1234555555555555555544443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.82 E-value=54 Score=30.87 Aligned_cols=167 Identities=10% Similarity=0.001 Sum_probs=95.5
Q ss_pred HHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHH----HHHHhHCCCccCHHHHHHHHHHHh
Q 038516 355 VGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKL----FCKMCREGLKCDNFALSGALSACA 430 (708)
Q Consensus 355 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 430 (708)
.+.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666778888889888887643 23345667777665554 555566788888888777777765
Q ss_pred Ccc-----cHHHHHHHHHHHHHhCC--CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhc---CC
Q 038516 431 DLA-----ILKQGEMIHSQAEKTGH--GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHY---GM 500 (708)
Q Consensus 431 ~~~-----~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~ 500 (708)
... +.+-..+......+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 432 11222223333333332 247778888888999999999888877422222344444443333322 22
Q ss_pred hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 038516 501 AEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMK 547 (708)
Q Consensus 501 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 547 (708)
..++-- ..-..++ -|.-.++...|..+++...
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 222111 1111122 2445677778877777654
No 265
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.62 E-value=23 Score=26.56 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038516 399 DGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV 461 (708)
Q Consensus 399 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (708)
+.-+..+-++.+....+.|++....+.|.+|.+.+++..|.++++.++..-- ....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 4456666777777777888888888888888888888888888887765421 1234455444
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=75.35 E-value=49 Score=30.22 Aligned_cols=56 Identities=5% Similarity=-0.167 Sum_probs=28.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcC
Q 038516 14 TLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEI 74 (708)
Q Consensus 14 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 74 (708)
+++..++..|+.+..+ .+.+.|..+....+.. ..+.+...+..|+.+-+..+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g 62 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQ----QLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHG 62 (285)
T ss_dssp HHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHH----HHHHcCCCcccccCCC-CCcHHHHHHHcCCHHHHHHHHHcC
Confidence 4455566667754443 4444554421111111 223445556677777777666653
No 267
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=74.90 E-value=3.5 Score=20.77 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=18.4
Q ss_pred chHHHHHHHHHHHHHHHhhhhhc
Q 038516 680 KIDDAQAELHRLRGNMRKLVTDE 702 (708)
Q Consensus 680 ~~~~~~~~l~~l~~~~~~~~~~~ 702 (708)
.+.++|.+|+.++..+.+.-+++
T Consensus 2 nadelykeledlqerlrklrkkl 24 (27)
T 3twe_A 2 NADELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999888876553
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.23 E-value=13 Score=35.93 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=33.0
Q ss_pred HhHHHHHhHhCCChhHHHHHhccCCCCC---cccHHHHHHHHhcCCC--hhHHHHHHHHHHhCCCCC
Q 038516 153 QTSLLGMYSNCGDFESAKRIFGLIGDKD---AVAWNSIILGNFKNDK--MKEGLSLFGAMVGSGVNP 214 (708)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 214 (708)
.+.++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+...+++..+...|+-+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 3566666666677777777777666552 1223333334333322 344556666666555443
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.60 E-value=13 Score=37.20 Aligned_cols=60 Identities=7% Similarity=-0.113 Sum_probs=35.1
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 522 TFLSLLSACSHSGLVERGKILWNQMKEH--SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
+...+...+.+.|+++.|.+.|.++... +..--...+-..++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445556666666666666666666554 22222445555566666666666666666555
No 270
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=73.37 E-value=14 Score=29.31 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516 503 EAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV 562 (708)
Q Consensus 503 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 562 (708)
+..+-++.+....+-|+.......+.+|.+.+|+..|.++|+-++.+ ..+....|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 45555666666667788888888888888888888888888777664 223344555554
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.14 E-value=50 Score=30.17 Aligned_cols=117 Identities=8% Similarity=-0.002 Sum_probs=61.9
Q ss_pred hHHHHHHhccCChHHHHHHhhcCCCCCcc---cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHhc
Q 038516 52 NNVLSMYGRCGSIRDARQVFDEIPKRSLV---SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLT--FTSLAQAVS 126 (708)
Q Consensus 52 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~ 126 (708)
+..+...++.|+++....+++.-...+.. .-.+.+...++.|+ . ++++.+.+.|..++... -.+.+...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~-~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR-E----DIVELLLRHGADPVLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC-H----HHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCC-H----HHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 34556667788888888888765433221 11233444555666 4 45555566666554321 112334444
Q ss_pred cccchHHHHHHHHHHHHhCCCCchhH--HhHHHHHhHhCCChhHHHHHhccCC
Q 038516 127 LLEDQLMGSLLHAQVIKYGSSEDTCV--QTSLLGMYSNCGDFESAKRIFGLIG 177 (708)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~ 177 (708)
..|+.+ +.+.+++.|..++... -...+...+..|+.+-+..+++.-.
T Consensus 81 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 81 IAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 555544 4445555665544221 1233444556677777666665543
No 272
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=71.85 E-value=55 Score=30.26 Aligned_cols=18 Identities=6% Similarity=-0.064 Sum_probs=10.0
Q ss_pred HHHhccCChHHHHHHhhc
Q 038516 56 SMYGRCGSIRDARQVFDE 73 (708)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~ 73 (708)
...+..|+.+-+..+++.
T Consensus 36 ~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 344456666666665554
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=71.54 E-value=31 Score=29.82 Aligned_cols=51 Identities=6% Similarity=-0.124 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516 602 RNSRMVIQAAEQVLR--LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM 652 (708)
Q Consensus 602 ~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 652 (708)
++...+..+|..+.. +.-..+..|...+..+...|++.+|.++++.-.+.+
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 335556666655543 445555566666666777777777777766555543
No 274
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.71 E-value=71 Score=30.03 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=98.9
Q ss_pred HHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCChHHHHHHHHHHhc
Q 038516 457 CGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV----FEVILEHGLRPDEITFLSLLSACSH 532 (708)
Q Consensus 457 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 532 (708)
|.++..=|.+.+++++|++++.. -...+.+.|+...|.++ .+-..+.+++++.....-++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 33555567778888888887643 23455667777666554 4445556788888777777766554
Q ss_pred cCcHH-HHHHHHHHhh----HCCC--CcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---C
Q 038516 533 SGLVE-RGKILWNQMK----EHSL--IPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAK---R 602 (708)
Q Consensus 533 ~~~~~-~a~~~~~~~~----~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 602 (708)
...-+ .=.+++++++ +.|- .-++.....++..|.+.|++.+|+.-+-... . .++..+..++.-+... |
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~-~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-H-DSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-H-HHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-ccHHHHHHHHHHHHHhcCCC
Confidence 22111 1122333332 2222 2256777888999999999999998765221 1 1455666665555444 4
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516 603 NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650 (708)
Q Consensus 603 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 650 (708)
...++--.+-++ +--|...|+...|..+++...+
T Consensus 183 ~~~e~dlf~~Ra--------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFSRL--------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHH--------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHH
Confidence 444333222221 2245677999999998887653
No 275
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.81 E-value=95 Score=30.37 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=21.5
Q ss_pred HHhHHHHHHHhcCCChhHHHHHhhcCC
Q 038516 355 VGTTLLNMYFKNGDAESPQKVFMLIAE 381 (708)
Q Consensus 355 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 381 (708)
....|...|.+.|+.++..+++.....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 47 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRP 47 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 346688889999999998888877654
No 276
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=66.02 E-value=42 Score=35.49 Aligned_cols=80 Identities=14% Similarity=0.047 Sum_probs=37.5
Q ss_pred hHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhH---h
Q 038516 390 MIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYA---K 466 (708)
Q Consensus 390 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 466 (708)
....+.-.|+++.|++.+-+. ...+.+.+...+..+.-.+- ...++..- .+ .| ..-+..|+..|. +
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 344555667777777766543 35566666665555433322 11111110 00 11 111345665565 3
Q ss_pred cCCHHHHHHHHhhC
Q 038516 467 NGDLRAAESIFSQV 480 (708)
Q Consensus 467 ~g~~~~A~~~~~~~ 480 (708)
.++..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777777766555
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.72 E-value=67 Score=27.84 Aligned_cols=60 Identities=15% Similarity=0.068 Sum_probs=24.3
Q ss_pred CChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHH
Q 038516 249 VDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALR 309 (708)
Q Consensus 249 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 309 (708)
++..+....+.++.+.|+.+....+.+.+..++...-...+.++.+.+. .++...+..+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3444444444444444443333333333333444444444444444443 23333333333
No 278
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.47 E-value=70 Score=28.13 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=6.1
Q ss_pred HhCCChhHHHHHhc
Q 038516 161 SNCGDFESAKRIFG 174 (708)
Q Consensus 161 ~~~g~~~~A~~~~~ 174 (708)
+..|+.+-+..+++
T Consensus 117 ~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 117 AQFGHTSIVAYLIA 130 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCHHHHHHHHHh
Confidence 34444444444443
No 279
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.88 E-value=73 Score=27.30 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=51.5
Q ss_pred HHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhH
Q 038516 155 SLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVC 234 (708)
Q Consensus 155 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 234 (708)
..+..+.+.|+.+....+.+.+..++...-...+.++...++.+ +...+..+.. .++...-...+.++...++.+.
T Consensus 33 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~ 108 (201)
T 3ltj_A 33 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQIGDERA 108 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH
Confidence 33333333333333333333333344333333444444444332 2333333332 2344444445555555444322
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCC
Q 038516 235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENG 296 (708)
Q Consensus 235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 296 (708)
...+.. +. ..++..+....+.++.+.++.+....+.+.+..++...-...+.++...|
T Consensus 109 ~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 109 VEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHH-HT---TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHH-HH---cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 222221 11 13344444444444444444333333333333344444444444444443
No 280
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.62 E-value=57 Score=26.00 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038516 399 DGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV 461 (708)
Q Consensus 399 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (708)
|.-+..+-++.+....+.|++......|.+|.+.+++..|..+++-++..- .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 444566667777777888999999999999998889988888888876543 22244455444
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.02 E-value=44 Score=29.56 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=61.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCccc---HHHHHHHHHhC
Q 038516 16 IQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVS---YNALIAAYSRD 92 (708)
Q Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~ 92 (708)
+..++..|+.+..+ .+.+.|..+. ..+.. ..+.+...++.|+++-+..+++.-...+... -.+.+...+..
T Consensus 13 l~~A~~~g~~~~~~----~Ll~~g~~~~-~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~ 86 (240)
T 3eu9_A 13 IVKATQYGIYERCR----ELVEAGYDVR-QPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ 86 (240)
T ss_dssp HHHHHHTTCHHHHH----HHHHTTCCTT-CCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred HHHHHHcCChHHHH----HHHHcCCCcC-CCCCC-CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence 33455667754444 4555665521 11222 2345667778899998888887655332211 11233344445
Q ss_pred CCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHhccccchHHHHHHHHHHHHhCCCCc
Q 038516 93 HDHAHLTFRLIDQMEFECLRPNGLT--FTSLAQAVSLLEDQLMGSLLHAQVIKYGSSED 149 (708)
Q Consensus 93 ~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 149 (708)
|+ . ++++.+.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..++
T Consensus 87 ~~-~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~~~~~~ 136 (240)
T 3eu9_A 87 GH-L----SMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS----IVAYLIAKGQDVD 136 (240)
T ss_dssp TC-H----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred CC-H----HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH----HHHHHHhcCCCcc
Confidence 55 3 44555556666555431 112344444556654 4455556665443
No 282
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=60.36 E-value=56 Score=26.78 Aligned_cols=79 Identities=8% Similarity=-0.024 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516 572 DEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR--LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK 649 (708)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 649 (708)
+.+...|...+.-..|+..+..-+.......+ +..+|+.+.. +.-..+..|...+..+...|++.+|.++++.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444442222454443333332222333 5666666654 456666778888888888899999988888776
Q ss_pred cCCC
Q 038516 650 GSML 653 (708)
Q Consensus 650 ~~~~ 653 (708)
+.+-
T Consensus 129 ~~~A 132 (152)
T 4a1g_A 129 QNQA 132 (152)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 6543
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.94 E-value=24 Score=35.37 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=68.5
Q ss_pred HHHHHHHhhHhcCCHHHHHHHHhhCC------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChHH-H-H
Q 038516 456 VCGSLVDMYAKNGDLRAAESIFSQVL------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH---GLRPDEIT-F-L 524 (708)
Q Consensus 456 ~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~-~-~ 524 (708)
....+...|.+.|++++|.+.|.++. ..-+..+-..++.+...+++..+...+.++... +-.|+... + .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 55678899999999999999998873 234567888889999999999999999988653 22333221 1 1
Q ss_pred HHHHHHhccCcHHHHHHHHHHhhHC
Q 038516 525 SLLSACSHSGLVERGKILWNQMKEH 549 (708)
Q Consensus 525 ~ll~~~~~~~~~~~a~~~~~~~~~~ 549 (708)
.-...+...+++..|-+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122355678999999999888775
No 284
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.14 E-value=99 Score=26.40 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=14.5
Q ss_pred CchhHHhHHHHHHHhcCCChhHHHHHhhcCCCC
Q 038516 351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD 383 (708)
Q Consensus 351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 383 (708)
++..+....+..+.+.+..+....+.+.+..++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~ 58 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDED 58 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSS
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCC
Confidence 444444444555555554333333333333333
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.81 E-value=81 Score=26.24 Aligned_cols=47 Identities=6% Similarity=-0.041 Sum_probs=35.6
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 607 VIQAAEQVLR--LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 607 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
+..+|+.+.. +.-..+..|...+..+...|++.+|.++++.-.+.+-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4455655554 5566777888999999999999999999998776653
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=51.49 E-value=1.2e+02 Score=26.17 Aligned_cols=17 Identities=29% Similarity=0.217 Sum_probs=7.3
Q ss_pred chhHHhHHHHHHHhcCC
Q 038516 352 SVFVGTTLLNMYFKNGD 368 (708)
Q Consensus 352 ~~~~~~~li~~~~~~g~ 368 (708)
+..+....+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333444444444444
No 287
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=50.78 E-value=43 Score=34.11 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=30.6
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516 599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR 646 (708)
Q Consensus 599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 646 (708)
+-....+.|...|.++..+.|++..+|+.||.+....|+.-+|.-.+-
T Consensus 163 RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHH
Confidence 334455667777777777777777777777766666666666554433
No 288
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.25 E-value=1e+02 Score=28.88 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=35.1
Q ss_pred HhHHHHHHHhcCCChhHHHHHhhcCCCCE--eeehhhHHHHhcCCC--hHHHHHHHHHHhH
Q 038516 356 GTTLLNMYFKNGDAESPQKVFMLIAEKDI--VLWTEMIIGHSRMGD--GECAIKLFCKMCR 412 (708)
Q Consensus 356 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~A~~~~~~m~~ 412 (708)
...++.-|...|+.++|...++++..+.. .....++..-...++ -+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999876641 111222332222332 2345556666654
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.06 E-value=32 Score=27.36 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=41.0
Q ss_pred hHHHHHhHhCCChhHHHHHhccCCCCC---cccHHHHHHHHhcCCC--hhHHHHHHHHHHhCCCCCCc
Q 038516 154 TSLLGMYSNCGDFESAKRIFGLIGDKD---AVAWNSIILGNFKNDK--MKEGLSLFGAMVGSGVNPTQ 216 (708)
Q Consensus 154 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 216 (708)
..++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 567777888889999999998887652 2233444445544432 45677788888776654433
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=49.90 E-value=2e+02 Score=28.33 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=11.4
Q ss_pred HHHHHhccCChHHHHHHhhc
Q 038516 54 VLSMYGRCGSIRDARQVFDE 73 (708)
Q Consensus 54 li~~~~~~g~~~~A~~~~~~ 73 (708)
.+...+..|+.+-+..+++.
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhC
Confidence 34444556666666666654
No 291
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=49.69 E-value=1.6e+02 Score=28.12 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCC
Q 038516 14 TLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDH 93 (708)
Q Consensus 14 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 93 (708)
+.|..++..|+.+..+. +++.|..+. ..+..- .+.+...+..|+.+-+..+++.-...+...-.+.+..-+..|
T Consensus 22 t~L~~Aa~~g~~~~v~~----Ll~~g~~~~-~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRR----LIETGVSPT-IQNRFG-CTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHTCHHHHHH----HHHTTCCTT-CCCTTC-CCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHH----HHHcCCCcc-ccCCCC-CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcC
Confidence 44445555566544333 334454421 111122 223344455677766666666544332211112233334455
Q ss_pred CChHHHHHHHHHHHHcCC
Q 038516 94 DHAHLTFRLIDQMEFECL 111 (708)
Q Consensus 94 ~~~~~a~~~~~~m~~~g~ 111 (708)
+ .+-+..+++.-...|.
T Consensus 96 ~-~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 96 K-TDLVVALVEGAKERGQ 112 (364)
T ss_dssp C-HHHHHHHHHHHHHHTC
T ss_pred C-HHHHHHHHHhccccCC
Confidence 5 5555555554333333
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.92 E-value=1.3e+02 Score=28.97 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=44.4
Q ss_pred HHhHHHHHHHhcCCChhHHHHHhhcCCCCE--eeehhhHHHHhcCCC--hHHHHHHHHHHhHCCCccCHHHHHHHHHHHh
Q 038516 355 VGTTLLNMYFKNGDAESPQKVFMLIAEKDI--VLWTEMIIGHSRMGD--GECAIKLFCKMCREGLKCDNFALSGALSACA 430 (708)
Q Consensus 355 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 430 (708)
....++.-|...++.++|...++++..+.. .....+|..-...++ -+.+..++..+.. ++-+.......+...+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle 134 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLK 134 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Confidence 347788999999999999999999876642 222223332222222 3445566666663 54444444443433333
Q ss_pred Cc
Q 038516 431 DL 432 (708)
Q Consensus 431 ~~ 432 (708)
..
T Consensus 135 ~l 136 (358)
T 3eiq_C 135 DL 136 (358)
T ss_dssp TH
T ss_pred hh
Confidence 33
No 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=48.74 E-value=1.2e+02 Score=25.60 Aligned_cols=17 Identities=0% Similarity=0.261 Sum_probs=10.7
Q ss_pred hccCChHHHHHHhhcCC
Q 038516 59 GRCGSIRDARQVFDEIP 75 (708)
Q Consensus 59 ~~~g~~~~A~~~~~~~~ 75 (708)
+..|+.+....++..-.
T Consensus 13 ~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 13 ANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHTTCHHHHHHHHTCTT
T ss_pred HHhccHHHHHHHHHcCC
Confidence 45667777777766543
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.62 E-value=55 Score=29.54 Aligned_cols=86 Identities=10% Similarity=-0.118 Sum_probs=42.2
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCCCCcch-------HHHHHHHhc--cccchHHHHHHHHHHHHhCC---------C-C
Q 038516 88 AYSRDHDHAHLTFRLIDQMEFECLRPNGLT-------FTSLAQAVS--LLEDQLMGSLLHAQVIKYGS---------S-E 148 (708)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~-~ 148 (708)
..++.|+ .+....+++.+.+.|..++... .+.|..++. +.|+.+.++.+++.-...+. . .
T Consensus 11 ~A~~~g~-~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~ 89 (260)
T 3jxi_A 11 DIVSRGS-PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDV 89 (260)
T ss_dssp HHHHHTC-GGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCS
T ss_pred HHHHhCC-HHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccc
Confidence 3344566 6666666666666665555332 233333332 55676666666655433110 0 0
Q ss_pred chhHHhHHHHHhHhCCChhHHHHHhcc
Q 038516 149 DTCVQTSLLGMYSNCGDFESAKRIFGL 175 (708)
Q Consensus 149 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 175 (708)
|.. -.+.+...+..|+.+-+.-+++.
T Consensus 90 d~~-g~t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 90 YYR-GQTALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp SEE-SBCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccC-CCCHHHHHHHcCCHHHHHHHHhC
Confidence 111 12233444556666666666654
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.23 E-value=1.5e+02 Score=25.92 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=27.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhc
Q 038516 16 IQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDE 73 (708)
Q Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 73 (708)
|..++..|+.+..+.+.+.+...|..+. ..+.. ..+.+...+..|+.+-+..+++.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNL-RQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTT-SCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC-ccccc-CCCHHHHHHHcCCHHHHHHHHHc
Confidence 4444555666666666665555554411 01111 12233444556666666555554
No 296
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.47 E-value=1.5e+02 Score=25.62 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=30.6
Q ss_pred ChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc
Q 038516 500 MAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMKEHSLIP 553 (708)
Q Consensus 500 ~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 553 (708)
+..++..+|..|...|+--... -|......+...|++.+|.++|+.-++.+-.|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3456666666666665554432 24444445555666666666666666655555
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.48 E-value=33 Score=27.31 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=35.7
Q ss_pred hhHHHHHHhccCChHHHHHHhhcCCCCC---cccHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCC
Q 038516 51 YNNVLSMYGRCGSIRDARQVFDEIPKRS---LVSYNALIAAYSRDHD-HAHLTFRLIDQMEFECL 111 (708)
Q Consensus 51 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~-~~~~a~~~~~~m~~~g~ 111 (708)
.+.++.-|...|+.++|.+.++++..|. ..+...+..++-+.+. ..+.+..++..+...|+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 3466677777777888888777776542 1233444445554432 13456667766666554
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.03 E-value=27 Score=28.81 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=40.9
Q ss_pred HhHHHHHhHhCCChhHHHHHhccCCCCC---cccHHHHHHHHhcCCC--hhHHHHHHHHHHhCCCCCCc
Q 038516 153 QTSLLGMYSNCGDFESAKRIFGLIGDKD---AVAWNSIILGNFKNDK--MKEGLSLFGAMVGSGVNPTQ 216 (708)
Q Consensus 153 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 216 (708)
.+.++.-|...|+.++|.+.++++..|. ..+..++..++-+.++ .+.+..++..+...|+-+..
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567777888889999999988887652 2233444445544322 45577788888776654433
No 299
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.33 E-value=2e+02 Score=26.25 Aligned_cols=142 Identities=9% Similarity=0.029 Sum_probs=69.2
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhH--HhHHHHHhHhC
Q 038516 86 IAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV--QTSLLGMYSNC 163 (708)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~ 163 (708)
+...++.|+ .+ +++.+.+.|..++...-.+.|...+..|+.+.++ .+++.|..++... -.+.+...+..
T Consensus 35 L~~A~~~g~-~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNN-VR----LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHTTC-HH----HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCC-HH----HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 334445666 44 4445555565554433234555666677765444 4455676544321 12334445566
Q ss_pred CChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHhccCChhHHHHHH
Q 038516 164 GDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQF-SYSMLLNACSRMGNFVCGKVIH 239 (708)
Q Consensus 164 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 239 (708)
|+.+-+.-+++.-.. .+..-|.+.+...+..|+.+ +++.+.+.|..+... .-.+.+...+..|+.+-+..++
T Consensus 106 g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 106 GNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp TCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 777777666654222 23333334444445555543 444444445443222 3334444445566665554444
Q ss_pred H
Q 038516 240 A 240 (708)
Q Consensus 240 ~ 240 (708)
+
T Consensus 182 ~ 182 (285)
T 3kea_A 182 D 182 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 300
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=41.93 E-value=1e+02 Score=26.36 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCCCCH-H-----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516 571 LDEAENLIAESPYSEIRI-E-----LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA 642 (708)
Q Consensus 571 ~~~A~~~~~~~~~~~~~~-~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 642 (708)
++.|+.+++.+....+.. . +-......|.+.|.+++|.+++++....+|.+...-.-|..+-.+...+..-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~l 171 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFF 171 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHH
Confidence 466777777764442211 0 11123345888899999999999888888777776666665555544444433
No 301
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=41.75 E-value=1.5e+02 Score=24.71 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=46.3
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----------------cCCCCcch-HH
Q 038516 565 LSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR-----------------LDPEDGTT-HI 626 (708)
Q Consensus 565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------~~p~~~~~-~~ 626 (708)
+.-.|.+..++-.+...... ....+..| ++...+|+..|...++.+++ .+|.+... +.
T Consensus 43 LyyngEY~R~Lf~L~~lNT~--Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTC--TSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBH--HHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hhhcchHhHHHHHHHhcchH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 33455566655555444211 11122222 33445666666666666652 23444443 66
Q ss_pred HHHHHHHhcCCchHHHHHHHHH
Q 038516 627 LLSNLYAATGRWDCVAKMRRKM 648 (708)
Q Consensus 627 ~l~~~~~~~g~~~eA~~~~~~~ 648 (708)
.++.++...|+.+||++.+..-
T Consensus 119 l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhhh
Confidence 7899999999999999988753
No 302
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=41.63 E-value=70 Score=22.65 Aligned_cols=62 Identities=10% Similarity=0.125 Sum_probs=42.8
Q ss_pred HHHHHcCCCCCcchHHHHHHHhcccc-chHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516 104 DQMEFECLRPNGLTFTSLAQAVSLLE-DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF 166 (708)
Q Consensus 104 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 166 (708)
+.|.+.|++.+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....+..+.+.|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 44667787777655 35666666654 5667888888888877666777777777777766643
No 303
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.05 E-value=1.9e+02 Score=25.26 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=10.2
Q ss_pred HhCCCChHHHHHHHHHHHHcCCCC
Q 038516 90 SRDHDHAHLTFRLIDQMEFECLRP 113 (708)
Q Consensus 90 ~~~~~~~~~a~~~~~~m~~~g~~p 113 (708)
++.|+ .+....+++.+.+.|..+
T Consensus 17 ~~~g~-~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 17 VVQGN-LPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHTTC-HHHHHHHHHHHHHTTCCS
T ss_pred HHcCC-HHHHHHHHHHHHhcCCCC
Confidence 33444 444444444444444333
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.62 E-value=32 Score=32.34 Aligned_cols=27 Identities=7% Similarity=0.262 Sum_probs=19.9
Q ss_pred hHHHHHHhccCChHHHHHHhhcCCCCC
Q 038516 52 NNVLSMYGRCGSIRDARQVFDEIPKRS 78 (708)
Q Consensus 52 ~~li~~~~~~g~~~~A~~~~~~~~~~~ 78 (708)
..+|.-|...|+.++|...++++..|.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 456677777788888888888877554
No 305
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=39.47 E-value=2.2e+02 Score=25.82 Aligned_cols=248 Identities=9% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCC----hHHHHHHHHHHhHCCCc
Q 038516 341 HALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGD----GECAIKLFCKMCREGLK 416 (708)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~A~~~~~~m~~~g~~ 416 (708)
...+.+.=-.++..+....+..+.+.|..+....+...+..++...-...+.++.+.|. ....+.++..+... .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d 102 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--D 102 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--C
Q ss_pred cCHHHHHHHHHHHhCcccHHH--HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHH
Q 038516 417 CDNFALSGALSACADLAILKQ--GEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGG 494 (708)
Q Consensus 417 p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 494 (708)
++...-...+.++...+.... ...+...+...--.++..+-...+.++.+.|+.+....+...+..++...-...+.+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 182 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHH
Q 038516 495 YSHYG-MAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDE 573 (708)
Q Consensus 495 ~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 573 (708)
+...| +...+...+.++.. .++...-...+.++...|+......+.+.+.. |+ .-...+.++.+.|. .+
T Consensus 183 L~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d----~~--vr~~a~~aL~~i~~-~~ 252 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK----NT--VYDDIIEAAGELGD-KT 252 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTS----SS--CCHHHHHHHHHHCC-GG
T ss_pred HHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcC----cc--HHHHHHHHHHhcCc-hh
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 038516 574 AENLIAESPYSEIRIELWRTLLSTCVA 600 (708)
Q Consensus 574 A~~~~~~~~~~~~~~~~~~~l~~~~~~ 600 (708)
+...+.++....++.......+....+
T Consensus 253 ~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 253 LLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp GHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred hhHHHHHHHhcCCCcHHHHHHHHHhhc
No 306
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=39.29 E-value=1.3e+02 Score=29.12 Aligned_cols=54 Identities=7% Similarity=-0.025 Sum_probs=39.4
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCC-CcchHHHHHHHHHHHH
Q 038516 619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQS-HPKIDDAQAELHRLRG 693 (708)
Q Consensus 619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~ 693 (708)
-.+.-.|..++..|.+.+++.||...+.....- .++.. .-+.+|||+++-++-.
T Consensus 315 n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V---------------------i~~YNY~reDeEIYKEf~eIAn 369 (550)
T 3u84_A 315 DEHIYPYMYLAGYHCRNRNVREALQAWADTATV---------------------IQDYNYCREDEEIYKEFFEVAN 369 (550)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HTTSCCCGGGHHHHHHHHHHHH
T ss_pred cCCccceeecchhhhhcchHHHHHHHHHHHHHH---------------------HHHcCCCcchHHHHHHHHHHHH
Confidence 345567899999999999999999998866431 11111 3678999999877553
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.89 E-value=61 Score=32.92 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC---CCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516 555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSE---IRIEL---WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT 623 (708)
Q Consensus 555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 623 (708)
...++.+++.|...+.++.|..++.+..... ++... +-.++..+...+++.+|.+.+..++...|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 5678888999999999999999999884321 12221 222344456688999999999999888876653
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.85 E-value=92 Score=31.63 Aligned_cols=62 Identities=8% Similarity=0.087 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcCh--HH-HHHHHHHHHhcCCHHHHHHHHHhC
Q 038516 520 EITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGH--KH-YSCMVSLLSRAGLLDEAENLIAES 581 (708)
Q Consensus 520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~ 581 (708)
...++.+++.|...+.++.|..+..+..-- ...++. .. +..++..+.-.+++.+|.+.+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 345899999999999999999999988521 111221 22 334577888899999999998876
No 309
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=37.64 E-value=1.5e+02 Score=28.09 Aligned_cols=55 Identities=9% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCC-CCcchHHHHHHHHHHHHH
Q 038516 619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQ-SHPKIDDAQAELHRLRGN 694 (708)
Q Consensus 619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~ 694 (708)
-...-+|..++..|.+.+++.||.+.+.....- .++. -.-+.+|||+++-++-.+
T Consensus 293 n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V---------------------i~~YNY~reDeEIYKEf~eIAne 348 (472)
T 3re2_A 293 DHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV---------------------AGKYNYSKDDEEMYKEFHEIAND 348 (472)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------HTTSCCCGGGHHHHHHHHHHHHT
T ss_pred cCCccchhhhhhhhhhcchHHHHHHHHHHHHHH---------------------HHHcCCCccHHHHHHHHHHHHHH
Confidence 345667899999999999999999998876431 1111 135778999988765533
No 310
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=37.48 E-value=41 Score=16.83 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.7
Q ss_pred chHHHHHHHHHHHHHHHhhhhh
Q 038516 680 KIDDAQAELHRLRGNMRKLVTD 701 (708)
Q Consensus 680 ~~~~~~~~l~~l~~~~~~~~~~ 701 (708)
.+.+.|.+|+..+..+.+.-++
T Consensus 2 nade~ykeled~qerlrk~rkk 23 (26)
T 4g3b_A 2 NADEXYKELEDXQERLRKXRKK 23 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 4678889998888888776554
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=36.80 E-value=1.2e+02 Score=27.11 Aligned_cols=27 Identities=22% Similarity=0.084 Sum_probs=16.1
Q ss_pred CCchhHHHHHHHhhHhcCCHHHHHHHH
Q 038516 451 GVEMSVCGSLVDMYAKNGDLRAAESIF 477 (708)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~ 477 (708)
.+++......+..+.+.|+.++|.++|
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLF 114 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHH
Confidence 334444555556666667777766666
No 312
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=36.40 E-value=1.8e+02 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=7.4
Q ss_pred hHhCCChhHHHHHhcc
Q 038516 160 YSNCGDFESAKRIFGL 175 (708)
Q Consensus 160 ~~~~g~~~~A~~~~~~ 175 (708)
.+..|+.+-+..+++.
T Consensus 84 A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3344555544444443
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.81 E-value=2e+02 Score=24.68 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=30.8
Q ss_pred hHHHHHHHhccCC-CChh-------HHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 038516 267 TQTAFSVFTRIEN-PDLV-------SWNSMIAGYMENGNGEKAVDMFVALRRM 311 (708)
Q Consensus 267 ~~~a~~~~~~~~~-~~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 311 (708)
++.|+.+|+.+.. .|.. .--..+..|.++|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 6788889988876 2211 1223456788999999999999986543
No 314
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=35.74 E-value=1.1e+02 Score=24.50 Aligned_cols=18 Identities=6% Similarity=-0.092 Sum_probs=9.4
Q ss_pred HHhHhCCChhHHHHHhcc
Q 038516 158 GMYSNCGDFESAKRIFGL 175 (708)
Q Consensus 158 ~~~~~~g~~~~A~~~~~~ 175 (708)
...+..|+.+-+.-+++.
T Consensus 106 ~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 106 HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhChHHHHHHHHhc
Confidence 333445565555555554
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=35.21 E-value=3.3e+02 Score=26.65 Aligned_cols=206 Identities=9% Similarity=0.072 Sum_probs=101.7
Q ss_pred HHHHHHhccCChHHHHHHhhcCCCCCcc--cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHhccc
Q 038516 53 NVLSMYGRCGSIRDARQVFDEIPKRSLV--SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLT--FTSLAQAVSLL 128 (708)
Q Consensus 53 ~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 128 (708)
+.+..-+..|+++-+..+++.-..++.. ...+.+..-++.|+ .+ +++.+.+.|..++... -.+.|...+..
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~-~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 90 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGH-TE----VAKYLLQNKAKVNAKAKDDQTPLHCAARI 90 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTC-HH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-HH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHC
Confidence 3455566788888888888764433221 11223444455566 44 4444445555443321 12344455566
Q ss_pred cchHHHHHHHHHHHHhCCCCchhH--HhHHHHHhHhCCChhHHHHHhccCCCC---CcccHHHHHHHHhcCCChhHHHHH
Q 038516 129 EDQLMGSLLHAQVIKYGSSEDTCV--QTSLLGMYSNCGDFESAKRIFGLIGDK---DAVAWNSIILGNFKNDKMKEGLSL 203 (708)
Q Consensus 129 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~ 203 (708)
|+.+ +.+.+++.|..++... -...+...++.|+.+.+..+++.-... +..-++. +...+..|+.+ +
T Consensus 91 g~~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~ 161 (437)
T 1n11_A 91 GHTN----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP-LHVAAKYGKVR----V 161 (437)
T ss_dssp TCHH----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----H
T ss_pred CCHH----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH-HHHHHHcCCHH----H
Confidence 6665 4445556676554321 123445556778888887777654332 2222233 33344556654 4
Q ss_pred HHHHHhCCCCCCcch--HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhH--HHHHHhcccCCChHHHHHHHhc
Q 038516 204 FGAMVGSGVNPTQFS--YSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLE--NALLDMYSKCSDTQTAFSVFTR 276 (708)
Q Consensus 204 ~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 276 (708)
++.+.+.|..|+... -.+.+...+..|+.+ +.+.+.+.|..++.... ...+...+..|+.+-+..+++.
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 444555565554321 112233344555554 33444455544433211 1223344556676666666654
No 316
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=34.60 E-value=2.3e+02 Score=24.59 Aligned_cols=24 Identities=0% Similarity=-0.118 Sum_probs=12.9
Q ss_pred HHHhcCCChhHHHHHHHHHHhCCC
Q 038516 189 LGNFKNDKMKEGLSLFGAMVGSGV 212 (708)
Q Consensus 189 ~~~~~~g~~~~A~~~~~~m~~~g~ 212 (708)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455566555555555555554
No 317
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.66 E-value=3.1e+02 Score=25.78 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 588 IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 588 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
.-.++..+..+.+.+|+..|..+.++++++.|... ..++|.++.....+.
T Consensus 207 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 207 TNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 34567777788999999999999999999999633 255677887776554
No 318
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.50 E-value=99 Score=25.24 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=46.3
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhcccc-chHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChh
Q 038516 103 IDQMEFECLRPNGLTFTSLAQAVSLLE-DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFE 167 (708)
Q Consensus 103 ~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 167 (708)
.+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3456778888877654 4566666666 67789999999998887777777666777777777543
No 319
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.15 E-value=2.1e+02 Score=24.00 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=58.5
Q ss_pred HHHHhccccchHHHHHHHHHHHHhCCCCchhH--HhHHHHHhHhCCChhHHHHHhccCC-C---CCcccHHHHHHHHhcC
Q 038516 121 LAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV--QTSLLGMYSNCGDFESAKRIFGLIG-D---KDAVAWNSIILGNFKN 194 (708)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~ 194 (708)
.|...+..|+.+ +.+.+++.|..++... -...+...+..|+.+-+..+++.-. . .+..-.+.+ ...+..
T Consensus 42 ~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~ 116 (201)
T 3hra_A 42 PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEK 116 (201)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHT
T ss_pred HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHc
Confidence 344444556654 4455556676554322 1233445566788887777774432 1 222222333 333445
Q ss_pred CChhHHHHHHHHHHhCC-CCC---CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh
Q 038516 195 DKMKEGLSLFGAMVGSG-VNP---TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDL 251 (708)
Q Consensus 195 g~~~~A~~~~~~m~~~g-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 251 (708)
|+.+-+..++ +.| ..+ +..-.+.+..++........-.++.+.+++.|..++.
T Consensus 117 ~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 117 GHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp TCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred CCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence 6654443333 333 222 2233344444443333233345666666777765543
No 320
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.83 E-value=46 Score=32.26 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=32.8
Q ss_pred hhHHHHHHhccCChHHHHHHhhcCCCCCc----ccHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 038516 51 YNNVLSMYGRCGSIRDARQVFDEIPKRSL----VSYNALIAAYSRDHDHAHLTFRLIDQMEFECL 111 (708)
Q Consensus 51 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~ 111 (708)
...+|.=|...|++++|.+.++++..|+. +.+..+..++-+.....+.+-.++..+...|+
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 34566667777777777777777765541 23333333433322212345556666665544
No 321
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.55 E-value=1.8e+02 Score=25.93 Aligned_cols=22 Identities=9% Similarity=-0.091 Sum_probs=15.7
Q ss_pred HHHHHhCCCChHHHHHHHHHHHH
Q 038516 86 IAAYSRDHDHAHLTFRLIDQMEF 108 (708)
Q Consensus 86 l~~~~~~~~~~~~a~~~~~~m~~ 108 (708)
+..+....+ +++|++++++...
T Consensus 25 LDv~IA~r~-feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLR-FESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHh-HHHHHHHHHHHHH
Confidence 556666777 8888887777654
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=30.91 E-value=40 Score=27.73 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=13.7
Q ss_pred hHHHHHHhccCChHHHHHHhhcCCCC
Q 038516 52 NNVLSMYGRCGSIRDARQVFDEIPKR 77 (708)
Q Consensus 52 ~~li~~~~~~g~~~~A~~~~~~~~~~ 77 (708)
+.++.-|...|+.++|.+.++++..|
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p 38 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP 38 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 34455555555555555555555433
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.82 E-value=3.3e+02 Score=30.50 Aligned_cols=27 Identities=4% Similarity=-0.118 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516 590 LWRTLLSTCVAKRNSRMVIQAAEQVLR 616 (708)
Q Consensus 590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 616 (708)
.|..++..+.+++-++-+.+..+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 445555555566666666666666665
No 324
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=29.26 E-value=2.3e+02 Score=25.89 Aligned_cols=157 Identities=8% Similarity=-0.044 Sum_probs=52.9
Q ss_pred hhchHHHHHHHHhccCChHHHHHHHHHHHHh----c--CCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCC---
Q 038516 8 LCRNIATLIQICASITSLKRARQIHALVLTT----N--HIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRS--- 78 (708)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--- 78 (708)
+.....+.+--++..|+......+.....+. . ..|....+..-+ +.+...+..|+.+-+..+++.-...+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~-t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW-SPMHEAAIHGHQLSLRNLISQGWAVNIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSC-CHHHHHHHTTCHHHHHHHHHTTCCSCEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCC-CHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 3344455666666666665555533322110 0 001111222222 33455566778777777776533222
Q ss_pred cccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchH--HHHHHHhccccchHHHHHHHHHHHHhCCCCchhH-HhH
Q 038516 79 LVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTF--TSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV-QTS 155 (708)
Q Consensus 79 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~ 155 (708)
..-++.| ..-+..|+ .+ +++.+.+.|..++.... .+.+...+..|+.+ +.+.+++.|..++... ...
T Consensus 90 ~~g~t~L-~~A~~~g~-~~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t 159 (285)
T 3d9h_A 90 ADHVSPL-HEACLGGH-LS----CVKILLKHGAQVNGVTADWHTPLFNACVSGSWD----CVNLLLQHGASVQPESDLAS 159 (285)
T ss_dssp TTCCCHH-HHHHHTTC-HH----HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCSSCSCTTSC
T ss_pred CCCCCHH-HHHHHCCc-HH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHH----HHHHHHHCCCCCCCCCCCCC
Confidence 1222233 33344555 43 34444445554433211 12233333444443 3444455554433211 223
Q ss_pred HHHHhHhCCChhHHHHHhcc
Q 038516 156 LLGMYSNCGDFESAKRIFGL 175 (708)
Q Consensus 156 li~~~~~~g~~~~A~~~~~~ 175 (708)
.+...+..|+.+-+..+++.
T Consensus 160 ~L~~A~~~g~~~~v~~Ll~~ 179 (285)
T 3d9h_A 160 PIHEAARRGHVECVNSLIAY 179 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 34444555666655555543
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.81 E-value=1.1e+02 Score=24.84 Aligned_cols=63 Identities=5% Similarity=-0.035 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516 103 IDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF 166 (708)
Q Consensus 103 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 166 (708)
.+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3446677777766544 35555555566778888888888887766766666666777766643
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=28.76 E-value=97 Score=24.72 Aligned_cols=62 Identities=10% Similarity=0.106 Sum_probs=40.7
Q ss_pred HHHHHcCCCCCcchHHHHHHHhcccc-chHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516 104 DQMEFECLRPNGLTFTSLAQAVSLLE-DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF 166 (708)
Q Consensus 104 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 166 (708)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 7 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346677777776654 3455555555 6677888888888887666666666666666666543
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.90 E-value=2.9e+02 Score=23.78 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=11.1
Q ss_pred HHHHhccCChHHHHHHhhc
Q 038516 55 LSMYGRCGSIRDARQVFDE 73 (708)
Q Consensus 55 i~~~~~~g~~~~A~~~~~~ 73 (708)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666666666654
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.72 E-value=1.2e+02 Score=28.92 Aligned_cols=61 Identities=15% Similarity=0.159 Sum_probs=34.9
Q ss_pred hhHHHHHHhccCChHHHHHHhhcCCCCCc---ccHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 038516 51 YNNVLSMYGRCGSIRDARQVFDEIPKRSL---VSYNALIAAYSRDHDHAHLTFRLIDQMEFECL 111 (708)
Q Consensus 51 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~ 111 (708)
...++.=|...|++++|.+.++++..|.- .....+..++-+.....+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 45677777788888888888888876531 12222232332222113445566666665544
No 329
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.57 E-value=3.1e+02 Score=23.60 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=38.1
Q ss_pred hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCC
Q 038516 395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI-----LKQGEMIHSQAEKTGH 450 (708)
Q Consensus 395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 450 (708)
.+..+.+.|+-.+-+|++.| .|....-..++.+....|. +..|...++....-|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35688999999999999999 7777776777777666654 3334444555555554
No 330
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.97 E-value=2.7e+02 Score=22.73 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc
Q 038516 504 AFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMKEHSLIP 553 (708)
Q Consensus 504 A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 553 (708)
+.++|..|...|+--... -|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 555555555555444322 23444444555555555555555555554444
No 331
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.90 E-value=2.1e+02 Score=25.16 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=27.7
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 607 VIQAAEQVLR--LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 607 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
+..+|..+.. +.-..+..|...+..+...|++.+|.++++.-.+.
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344444443 44555566777777777777777777777765544
No 332
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.75 E-value=2.3e+02 Score=26.92 Aligned_cols=92 Identities=8% Similarity=-0.051 Sum_probs=51.5
Q ss_pred hHHHHHHhccCChHHHHHHhhcCCCC---CcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccc
Q 038516 52 NNVLSMYGRCGSIRDARQVFDEIPKR---SLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLL 128 (708)
Q Consensus 52 ~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 128 (708)
.+.+...+..|+.+-+..+++.-..+ +..-++.| ...+..|+ . ++++.+.+.|..++...-.+.|...+..
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~g~-~----~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTAL-HLACKFGC-V----DTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHCC-H----HHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHH-HHHHHcCC-H----HHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 34455566788888888888763322 22223333 33344556 3 4445555556555543333345555667
Q ss_pred cchHHHHHHHHHHHHhCCCCc
Q 038516 129 EDQLMGSLLHAQVIKYGSSED 149 (708)
Q Consensus 129 ~~~~~a~~~~~~~~~~g~~~~ 149 (708)
|+.+.++.+++.....|..++
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHhccccCCCHH
Confidence 777777777776555565444
No 333
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=25.48 E-value=3e+02 Score=23.05 Aligned_cols=176 Identities=17% Similarity=0.071 Sum_probs=85.4
Q ss_pred HhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--------------ChHH-HHHHH
Q 038516 465 AKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR--P--------------DEIT-FLSLL 527 (708)
Q Consensus 465 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--------------~~~~-~~~ll 527 (708)
.-.|.+..+.-++...-.-...-|.. -+|-+.+++..|+..++.++...+. | |..- ++.+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 34677777777776543322222332 2566778888888888888854443 2 2222 33344
Q ss_pred HHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 038516 528 SACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG--LLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSR 605 (708)
Q Consensus 528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 605 (708)
..|...|+.++|+..+..--. ..|-..+...|+ | ..+ ..-+-+.+..+-. ++....-+...........+
T Consensus 122 ~lltq~g~r~EaI~y~~~Sf~--~~~lf~~vEnli--y-eN~vp~~~d~~~i~~~~~-~~i~~~y~~d~~~lHe~~s~-- 193 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVRSFG--KSFLFSPVENLL--L-ENKVPQKRDKENVRQTGR-RGIEEEYVSDSIEFHESLSP-- 193 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHHHHHHHH--H-TTCCCCCC------------CHHHHHHHHHHHHHHHCCH--
T ss_pred HHHHHhcCHHHhhhHhhhhcC--CccccchHHHHH--h-hcCCCcccchHHHHhhhh-ccchhhhhhhHHHHHHhccH--
Confidence 456666777777766655433 222222222111 0 000 0000000000000 00001112222111111111
Q ss_pred HHHHHHHHHHhcCCCCcchHH-HHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516 606 MVIQAAEQVLRLDPEDGTTHI-LLSNLYAATGRWDCVAKMRRKMKGSML 653 (708)
Q Consensus 606 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~eA~~~~~~~~~~~~ 653 (708)
...++-.+.-|.-.+.+. ..+.-|...|..++...+|..++++.+
T Consensus 194 ---~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 194 ---SLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp ---HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred ---HHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCC
Confidence 444555566677655444 345668889999999999998887544
No 334
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.21 E-value=3.3e+02 Score=23.44 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=28.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 038516 496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGL 535 (708)
Q Consensus 496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 535 (708)
.+..+++.|+-++-+|++.| .|....-..++.+...-|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 35578999999999999998 7766666666666655553
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.06 E-value=1.5e+02 Score=26.39 Aligned_cols=53 Identities=8% Similarity=-0.103 Sum_probs=32.8
Q ss_pred HHHhccccchHHHHHHHHHHHHhCCCCchhH-------HhHHHHHhH--hCCChhHHHHHhc
Q 038516 122 AQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV-------QTSLLGMYS--NCGDFESAKRIFG 174 (708)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~ 174 (708)
|...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~ 70 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH
Confidence 4445577888888889988888887665333 233333321 4566666655554
No 336
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=24.57 E-value=5.3e+02 Score=26.29 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=23.1
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516 617 LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS 651 (708)
Q Consensus 617 ~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 651 (708)
..|++......|-..|.+.|++-+|.+++..+...
T Consensus 212 ~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 212 KAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp TCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred cCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 34566666667777777788888888887777655
No 337
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.46 E-value=2e+02 Score=21.17 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCCCCCCCcchhhHHHHHHhc-c-CChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHH
Q 038516 30 QIHALVLTTNHIPINAQSPYMYNNVLSMYGR-C-GSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLT 99 (708)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a 99 (708)
.+++.+.+.|+- +..-... .-.. . .+.+.|.++++.++.++..+|..++.++...+. ..-|
T Consensus 25 ~vld~L~~~~vl-----t~~~~e~---I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~-~~La 87 (97)
T 3ygs_P 25 QLWDVLLSRELF-----RPHMIED---IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQ-DMLA 87 (97)
T ss_dssp TTHHHHHHTTSS-----CHHHHHH---HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHHHHcCCC-----CHHHHHH---HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc-HHHH
Confidence 466667666654 3222222 2222 2 478999999999999888999999999987676 5444
No 338
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.21 E-value=2.4e+02 Score=25.74 Aligned_cols=118 Identities=9% Similarity=-0.012 Sum_probs=39.4
Q ss_pred cchhhHHHHHHhccCChHHHHHHhhcCC--------------CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC
Q 038516 48 PYMYNNVLSMYGRCGSIRDARQVFDEIP--------------KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRP 113 (708)
Q Consensus 48 ~~~~~~li~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p 113 (708)
.....+.+...+..|+..+..+.....+ ..+..-++. +...+..|+ . ++++.+.+.|..+
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~-L~~Aa~~g~-~----~~v~~Ll~~g~~~ 85 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP-MHEAAIHGH-Q----LSLRNLISQGWAV 85 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCH-HHHHHHTTC-H----HHHHHHHHTTCCS
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCH-HHHHHHcCC-H----HHHHHHHHCCCCC
Confidence 3445566677778888777777543321 122222333 334455666 4 4445555566555
Q ss_pred Ccch--HHHHHHHhccccchHHHHHHHHHHHHhCCCCchhH--HhHHHHHhHhCCChhHHHHHhcc
Q 038516 114 NGLT--FTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV--QTSLLGMYSNCGDFESAKRIFGL 175 (708)
Q Consensus 114 ~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 175 (708)
+... -.+.|...+..|+.+.+ +.+++.|..++... ...-+...+..|+.+-+..+++.
T Consensus 86 ~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 147 (285)
T 3d9h_A 86 NIITADHVSPLHEACLGGHLSCV----KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147 (285)
T ss_dssp CEECTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCcCCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC
Confidence 4332 11234444455665443 34445565443221 11223333445565555555543
No 339
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=23.70 E-value=3.6e+02 Score=23.32 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=25.8
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhc
Q 038516 15 LIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDE 73 (708)
Q Consensus 15 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 73 (708)
.+..++..|+.+ +...+.+.|..+. ..+..-+ +.+...+..|+.+-+..+++.
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~-~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~ 66 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANID-TCSEDQR-TPLMEAAENNHLEAVKYLIKA 66 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTT-CCCTTCC-CHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcC-ccCCCCC-CHHHHHHHhCCHHHHHHHHhC
Confidence 344445556643 3444555565421 1111222 334445567777777776665
No 340
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.66 E-value=1.5e+02 Score=20.85 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=31.1
Q ss_pred HHHhCCCCCCcchHHHHHHHHhccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCC
Q 038516 206 AMVGSGVNPTQFSYSMLLNACSRMG-NFVCGKVIHARVIISNTQVDLPLENALLDMYSKCS 265 (708)
Q Consensus 206 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 265 (708)
.|.+.|++++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3455666655433 34445555443 44556677777666655555555444444444433
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.57 E-value=1.3e+02 Score=24.30 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=19.8
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccC
Q 038516 187 IILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMG 230 (708)
Q Consensus 187 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 230 (708)
++..+...+..-.|.++++.+.+.+...+..|....|..+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33334344444455555555554444444444444444444333
No 342
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.55 E-value=84 Score=28.20 Aligned_cols=23 Identities=9% Similarity=-0.350 Sum_probs=11.6
Q ss_pred hccccchHHHHHHHHHHHHhCCC
Q 038516 125 VSLLEDQLMGSLLHAQVIKYGSS 147 (708)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~g~~ 147 (708)
.+..|+.+..+.+++.+.+.|..
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC
Confidence 33445555555555555555543
No 343
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.90 E-value=3.4e+02 Score=22.47 Aligned_cols=50 Identities=6% Similarity=0.175 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc
Q 038516 504 AFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMKEHSLIP 553 (708)
Q Consensus 504 A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p 553 (708)
+..+|..|...|+--... -|......+...|++.+|.++|..-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 445566666655544322 23444444555556666666666555555444
No 344
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.55 E-value=1.8e+02 Score=30.87 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516 572 DEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD 639 (708)
Q Consensus 572 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 639 (708)
+.|.++++-|. ...............|++.-|.++...++..+|+|..+...++++|.+.|--.
T Consensus 437 ~~a~~~v~~~g----g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 437 DSAGRYVEYMG----GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 55666666664 22333344455667899999999999999999999999889999888876433
No 345
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.28 E-value=3.9e+02 Score=22.91 Aligned_cols=88 Identities=8% Similarity=-0.061 Sum_probs=44.6
Q ss_pred HHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCC---CcccHHHHHHHHHhC
Q 038516 16 IQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKR---SLVSYNALIAAYSRD 92 (708)
Q Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~ 92 (708)
+..++..|+.+..+.++..-...-.. .+..-. +.+...+..|+.+-+..+++.-..+ +..-++.+. ..+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~----~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATR----TDQDSR-TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH-IAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGC----CCTTSC-CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH-HHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhc----CCCCCC-CHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHH-HHHHc
Confidence 55566678877777666542211111 233333 3445556778888877777653322 222233333 33334
Q ss_pred CCChHHHHHHHHHHHHcCCCCC
Q 038516 93 HDHAHLTFRLIDQMEFECLRPN 114 (708)
Q Consensus 93 ~~~~~~a~~~~~~m~~~g~~p~ 114 (708)
|+ . ++++.+.+.|..++
T Consensus 84 ~~-~----~~v~~Ll~~g~~~~ 100 (231)
T 3aji_A 84 GX-D----EIVKALLVKGAHVN 100 (231)
T ss_dssp TC-H----HHHHHHHHTTCCTT
T ss_pred CH-H----HHHHHHHHcCCCCC
Confidence 55 3 34555555665544
No 346
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.12 E-value=3.3e+02 Score=23.35 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHHHhcC---CChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038516 390 MIIGHSRM---GDGECAIKLFCKMCREGLKCDNFALSGALSACADLA-----ILKQGEMIHSQAEKTGHGVEMSVCGSLV 461 (708)
Q Consensus 390 li~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 461 (708)
+|+++.+. .+.+.|+-.+-+|++.|-.|....-..++.+....| -+..+...++....-|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HhhHhcCCHHHHHHHHhh
Q 038516 462 DMYAKNGDLRAAESIFSQ 479 (708)
Q Consensus 462 ~~~~~~g~~~~A~~~~~~ 479 (708)
..++.+-+...+...++.
T Consensus 90 iyLA~aPKSNs~y~A~~~ 107 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNT 107 (201)
T ss_dssp HHHHHSCCCCHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHH
No 347
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=21.11 E-value=4.1e+02 Score=23.06 Aligned_cols=62 Identities=16% Similarity=0.251 Sum_probs=42.8
Q ss_pred hhHHHHh---cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc-----HHHHHHHHHHHHHhCC
Q 038516 389 EMIIGHS---RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI-----LKQGEMIHSQAEKTGH 450 (708)
Q Consensus 389 ~li~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 450 (708)
.+|+++. +..+.+.|+-.+-+|++.|-.|....-..++.+....|. +..|...++....-|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3455543 468999999999999999988888877777777766553 3344444455555554
No 348
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=20.95 E-value=1.9e+02 Score=23.90 Aligned_cols=63 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHh--CCCCchhHHhHHHHHhHhCC
Q 038516 101 RLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKY--GSSEDTCVQTSLLGMYSNCG 164 (708)
Q Consensus 101 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g 164 (708)
.+-+.+.+.|+++ +..-..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|
T Consensus 19 ~~~~~L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 19 RFKKILRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
No 349
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.59 E-value=1e+02 Score=24.95 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCC
Q 038516 101 RLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCG 164 (708)
Q Consensus 101 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 164 (708)
++-+.+++.|++++..-.. ++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 5 ~~~~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp THHHHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
No 350
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.48 E-value=86 Score=20.73 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHhCCCCCCcchHHHHHHHH-hccC
Q 038516 197 MKEGLSLFGAMVGSGVNPTQFSYSMLLNAC-SRMG 230 (708)
Q Consensus 197 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~ 230 (708)
.++|.+.|.+|++..-.++..||...++.+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 467888888887665555667888888887 5543
Done!