BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038517
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
CAVCL + GE +R C H FHA C+D+WL TCP CR
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 43.1 bits (100), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
C +CL + +GE R C H+FH C+D WL+ CP CR
Sbjct: 17 CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICR 58
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 55 QRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPF 107
+ NL +CAVCL+ K CKH FH +C+ WL R CP C P
Sbjct: 11 ELNLHELCAVCLEDF-KPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPV 62
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 42 SLEKIRGFPWFDCQRNLAAI-----CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR 96
S E I P + A+ C +C KG+ + C H FH C+ +WL +
Sbjct: 18 SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76
Query: 97 RLTCPTCRSPF 107
TCP CR F
Sbjct: 77 SGTCPVCRCMF 87
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRS 105
+C VC+ + R C H FHA+C+D WL TCP CR+
Sbjct: 24 TLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
C VC + GE R C H+FH CI WL + +CP CR
Sbjct: 18 CPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
C +C+DG R+ C H F +CID W R CP CR
Sbjct: 18 CCICMDG-----RADLILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 81 CKHVFHARCIDLWLVRRLTCPTCRSPFK 108
C H F + CI+ W+ R++ CP CR K
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 81 CKHVFHARCIDLWLVRRLTCPTCRSPFK 108
C H F + CI+ W+ R++ CP CR K
Sbjct: 71 CAHSFCSYCINEWMKRKIECPICRKDIK 98
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 81 CKHVFHARCIDLWLVRRLTCPTCRSPFK 108
C H F + CI+ W+ R++ CP CR K
Sbjct: 82 CAHSFCSYCINEWMKRKIECPICRKDIK 109
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCP 101
+ +C H FH CI WL R CP
Sbjct: 81 WGVCNHAFHFHCISRWLKTRQVCP 104
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCP 101
+ +C H FH CI WL R CP
Sbjct: 70 WGVCNHAFHFHCISRWLKTRQVCP 93
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCP 101
+ +C H FH CI WL R CP
Sbjct: 70 WGVCNHAFHFHCISRWLKTRQVCP 93
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCP 101
+ +C H FH CI WL R CP
Sbjct: 72 WGVCNHAFHFHCISRWLKTRQVCP 95
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCP 101
+ +C H FH CI WL R CP
Sbjct: 62 WGVCNHAFHFHCISRWLKTRQVCP 85
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSP 106
C +CL+ +H + C H+ H C + L CP C P
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCP 101
+ +C H FH CI WL R CP
Sbjct: 64 WGVCNHAFHFHCISRWLKTRQVCP 87
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 57 NLAAICAVCLDGVHKGERSRNFSI---CKHVFHARCIDLWLVRRLTCPTCRSPFK 108
+A C +CL E N+S+ C H F CI W+ + TCP C+ P +
Sbjct: 3 TVAERCPICL------EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCP 101
+ +C H FH CI WL R CP
Sbjct: 54 WGVCNHAFHFHCISRWLKTRQVCP 77
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 CAVCLDGVHKGERSRNFSI---CKHVFHARCIDLWLVRRLTCPTCR 104
C +C+DG + ++ + C HVF ++C+ L TCPTCR
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 CAVCLDGVHKGERSRNFSI---CKHVFHARCIDLWLVRRLTCPTCR 104
C +C+DG + ++ + C HVF ++C+ L TCPTCR
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 63
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 CAVCLDGVHKGERSRNFSI---CKHVFHARCIDLWLVRRLTCPTCR 104
C +C+DG + ++ + C HVF ++C+ L TCPTCR
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 51
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 CAVCLDGVHKGERSRNFSI---CKHVFHARCIDLWLVRRLTCPTCR 104
C +C+DG + ++ + C HVF ++C+ L TCPTCR
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 55
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 62 CAVCLDGVHKGERSRNFSI---CKHVFHARCIDLWLVRRLTCPTCR 104
C +C+DG + ++ + C HVF ++C+ L TCPTCR
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 120
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 16 SPVIDFNEDYRLYNNTASSTDGISGFSLEKIRG 48
+P ID N++YRLY S DG + E+++
Sbjct: 474 NPNIDKNDEYRLYQTIVGSFDGFNNEYKERLKA 506
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 47 RGFPWFDCQRNLAAICAVCLD 67
+G DCQ+NL A+ AV LD
Sbjct: 166 KGAQKTDCQKNLGAVGAVALD 186
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 78 FSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEPV 112
+ C H FH C+ LW+ + CP C+ + ++ +
Sbjct: 45 WGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRI 79
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTC 103
C +CL+ +H + C H+ H C + L CP C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|1G25|A Chain A, Solution Structure Of The N-Terminal Domain Of The Human
Tfiih Mat1 Subunit
Length = 65
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 79 SICKHVFHARCIDLWLVRRL-TCPTCRSPFK 108
++C H C+DL VR CP C +P +
Sbjct: 24 NVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54
>pdb|3CZ7|A Chain A, Molecular Basis For The Autoregulation Of The Protein
Acetyl Transferase Rtt109
Length = 364
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 8 QMLSSSASSPVIDFNEDYRLYNNTASSTDGISGFSLEKIRGFP 50
++L S SS I+ E + SS GISG+SL FP
Sbjct: 263 RLLKVSLSSFWIELQERQEFKLSVTSSVXGISGYSLATPSLFP 305
>pdb|2ZFN|A Chain A, Self-Acetylation Mediated Histone H3 Lysine 56 Acetylation
By Rtt109
Length = 460
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 8 QMLSSSASSPVIDFNEDYRLYNNTASSTDGISGFSLEKIRGFP 50
++L S SS I+ E + SS GISG+SL FP
Sbjct: 326 RLLKVSLSSFWIELQERQEFKLSVTSSVXGISGYSLATPSLFP 368
>pdb|2RIM|A Chain A, Crystal Structure Of Rtt109
Length = 457
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 8 QMLSSSASSPVIDFNEDYRLYNNTASSTDGISGFSLEKIRGFP 50
++L S SS I+ E + SS GISG+SL FP
Sbjct: 323 RLLKVSLSSFWIELQERQEFKLSVTSSVXGISGYSLATPSLFP 365
>pdb|4DIB|A Chain A, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|B Chain B, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|C Chain C, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|D Chain D, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|E Chain E, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|F Chain F, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|G Chain G, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
pdb|4DIB|H Chain H, The Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Bacillus Anthracis Str. Sterne
Length = 345
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 2 AISDLFQMLSSSASSPVIDFNED----YRLYNNTASS-TDGISGFSL--EKIRGFPWFD 53
AI+D F+ +++ A +++F+E+ NT S+ DG+S + K++ W+D
Sbjct: 258 AINDAFKTVANGALKGIVEFSEEPLVSIDFNTNTHSAIIDGLSTMVMGDRKVKVLAWYD 316
>pdb|3LRQ|A Chain A, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|B Chain B, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|C Chain C, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d.
pdb|3LRQ|D Chain D, Crystal Structure Of The U-Box Domain Of Human Ubiquitin-
Protein Ligase (E3), Northeast Structural Genomics
Consortium Target Hr4604d
Length = 100
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 73 ERSRNFSICKHVFHA---RCIDLWLV-RRLTCPTCRSPFKM 109
E+ R+ +C H CI WL +R CP CR+P ++
Sbjct: 30 EKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70
>pdb|2IU5|A Chain A, Dihydroxyacetone Kinase Operon Activator Dhas
pdb|2IU5|B Chain B, Dihydroxyacetone Kinase Operon Activator Dhas
Length = 195
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 41 FSLEKIRGFPW------FDCQRNLAAICAVCLDGVHKG 72
F EK + W F C+ N AAICA+ + + +G
Sbjct: 127 FDQEKKSDYHWSDLEKSFICRYNAAAICAITRESIIRG 164
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 22 NEDYRLYNNTASSTDGISGFS 42
N+DY YN T+ +T +SG +
Sbjct: 359 NQDYEYYNGTSMATPHVSGVA 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,323,266
Number of Sequences: 62578
Number of extensions: 116229
Number of successful extensions: 368
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 36
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)