BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038517
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZV51|ATL56_ARATH RING-H2 finger protein ATL56 OS=Arabidopsis thaliana GN=ATL56 PE=2
SV=1
Length = 181
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 33 SSTDGISGFSLEKIRGFPWFD--CQRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCI 90
S+DG+S ++K+ F + + + C VC DG +G+ RN C HVFH +C+
Sbjct: 79 ESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFRQGQWCRNLPGCGHVFHRKCV 138
Query: 91 DLWLVRRLTCPTCRSPFKM 109
D WL++ TCP CR+ ++
Sbjct: 139 DTWLLKASTCPICRARVRL 157
>sp|Q9C919|ATL19_ARATH Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana
GN=ATL19 PE=3 SV=1
Length = 178
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPF 107
CA+CL G E R F +C+H++HA CID WL LTCPTCR
Sbjct: 130 CAICLSGYVVNEECRVFPVCRHIYHALCIDAWLKNHLTCPTCRKDL 175
>sp|Q9M0C3|ATL14_ARATH RING-H2 finger protein ATL14 OS=Arabidopsis thaliana GN=ATL14 PE=2
SV=1
Length = 176
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 35 TDGISGFSLEKIRGFPWFDCQRNLAAI-CAVCLDGVHKGERSRNFSICKHVFHARCIDLW 93
+DG+S ++++ F + + C VC+DG +G+ R C HVFH +C+DLW
Sbjct: 87 SDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLW 146
Query: 94 LVRRLTCPTCR 104
L++ TCP CR
Sbjct: 147 LIKVSTCPICR 157
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 44 EKIRGFPWFDCQR-NLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCP 101
E+++ P D Q+ + +CA+CLD G++ R C H +H+RC+D WL + R TCP
Sbjct: 211 EQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCP 269
Query: 102 TCRSPFKMEP 111
C+ P P
Sbjct: 270 ICKQPVHRGP 279
>sp|P0C034|ATL10_ARATH RING-H2 finger protein ATL10 OS=Arabidopsis thaliana GN=ATL10 PE=2
SV=1
Length = 251
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 33 SSTDGISGFSLEK--IRGFPW--FDCQRNLAAI---CAVCLDGVHKGERSRNFSICKHVF 85
SST G S ++K +R FP + + NL + C +CL GE+ R C H F
Sbjct: 99 SSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGF 158
Query: 86 HARCIDLWLVRRLTCPTCRS 105
H RCID WL + LTCP CR+
Sbjct: 159 HVRCIDKWLQQHLTCPKCRN 178
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 44 EKIRGFPWFDCQR-NLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCP 101
E+++ P D Q+ + +CA+CLD G++ R C H +H+RC+D WL + R TCP
Sbjct: 211 EQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLP-CAHAYHSRCVDPWLTQTRKTCP 269
Query: 102 TCRSPFKMEP 111
C+ P P
Sbjct: 270 ICKQPVHRGP 279
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 44 EKIRGFPWFDCQR-NLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCP 101
E+++ P D Q+ + +CA+CLD G++ R C H +H+RC+D WL + R TCP
Sbjct: 211 EQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRILP-CAHAYHSRCVDPWLTQTRKTCP 269
Query: 102 TCRSPFKMEP 111
C+ P P
Sbjct: 270 ICKQPVHRGP 279
>sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2
SV=1
Length = 181
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%)
Query: 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110
A C +CL GE+ R C H FH RCID WL+ R +CPTCR +E
Sbjct: 111 ATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLE 162
>sp|Q8LBA0|NIPL2_ARATH NEP1-interacting protein-like 2 OS=Arabidopsis thaliana GN=ATL24
PE=1 SV=2
Length = 223
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 19 IDFNEDYRLYNNTASSTDGISGFSLEKIRGFPWF----DCQRNLAAICAVCLDGVHKGER 74
+ + E +Y + G+SG SL K+ P + + R C +CL + GE
Sbjct: 134 VSYEEREDVYGELEAR--GLSGDSLRKL---PCYIMSSEMVRRQVTHCTICLQDIKTGEI 188
Query: 75 SRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108
+R+ C H FH C+D WL+R +CP CR K
Sbjct: 189 TRSLPKCDHTFHLVCVDKWLIRHGSCPICRQAVK 222
>sp|Q94BY6|ATL75_ARATH RING-H2 finger protein ATL75 OS=Arabidopsis thaliana GN=ATL75 PE=2
SV=1
Length = 226
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 40 GFSLEKIRGFPW--FDCQRNLAAI---CAVCLDGVHKGERSRNFSICKHVFHARCIDLWL 94
G + + +R FP + + NL + C +CL GE+ R C H FH RCID WL
Sbjct: 109 GINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWL 168
Query: 95 VRRLTCPTCR 104
+ LTCP CR
Sbjct: 169 QQHLTCPKCR 178
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 10 LSSSASSPVIDFNEDYRLYNNTASSTDGISGFSLEKI-----RGFPWFDCQRNLAAICAV 64
L + + P++ + L N + D I G + E+I R + L IC+V
Sbjct: 577 LVETGTLPILRLAHFFLL--NESDDDDRIRGLTKEQIDNLSTRHYEHNSIDSELGKICSV 634
Query: 65 CLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSP 106
C+ G + R C H FH CID WL TCP CR P
Sbjct: 635 CISDYVTGNKLRQLP-CMHEFHIHCIDRWLSENCTCPICRQP 675
>sp|Q6NML0|ATL76_ARATH E3 ubiquitin-protein ligase ATL76 OS=Arabidopsis thaliana GN=ATL76
PE=1 SV=1
Length = 225
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 40 GFSLEKIRGFPWFDCQR--NLAAI---CAVCLDGVHKGERSRNFSICKHVFHARCIDLWL 94
G + +R FP R NL I C +CL GE+ R C H FH RCID WL
Sbjct: 108 GIKKKALRMFPVVSYSREMNLPGIGEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWL 167
Query: 95 VRRLTCPTCR 104
LTCP CR
Sbjct: 168 QHHLTCPKCR 177
>sp|Q9LY41|ATL4_ARATH E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana GN=ATL4
PE=1 SV=1
Length = 334
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPF 107
CAVCL ++ R +C H FHA CID+WLV TCP CRSP
Sbjct: 117 CAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPL 162
>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42
PE=1 SV=2
Length = 432
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 27 LYNNTASSTDGISGFSLEKIRGFPWFDCQ----RNLAAICAVCLDGVHKGERSRNFSICK 82
+N + +S+D SG I P F C+VCL E R C+
Sbjct: 84 FFNRSTASSDRFSGLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCR 143
Query: 83 HVFHARCIDLWLVRRLTCPTCRSPFKME 110
H FH CID WL + TCP CR ME
Sbjct: 144 HAFHIGCIDQWLEQHATCPLCRDRVSME 171
>sp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL3 OS=Arabidopsis thaliana GN=ATL3 PE=2
SV=1
Length = 324
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 12 SSASSPVIDFNEDYRLY---NNTASSTDGISGFSLEK--IRGFPWFDCQRNLAAICAVCL 66
SS + PV+ + R A S G++ F L I F C+ L C++CL
Sbjct: 74 SSIAPPVVTRRQRRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQDSCKDGLE--CSICL 131
Query: 67 DGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRS 105
+ KG+++R C H FH CID+W TCP CR+
Sbjct: 132 SELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRN 170
>sp|Q9SLC3|ATL41_ARATH E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana GN=ATL41
PE=1 SV=1
Length = 236
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 31 TASSTDGISGFSLEKIRGFPWFDCQRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCI 90
T +TDG++ + E CAVCL + + +++R CKH+FH C+
Sbjct: 94 TVGATDGVAASATE-----------------CAVCLSVLKEQDKARELPNCKHIFHVDCV 136
Query: 91 DLWLVRRLTCPTCRSPFKMEP 111
D WL TCP CR+ + P
Sbjct: 137 DTWLTTCSTCPVCRTEVEPRP 157
>sp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2
SV=1
Length = 261
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
+ + C+VCL ++ + +CKH FH CIDLWL TCP CR
Sbjct: 96 MDSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCR 142
>sp|Q6NKR1|ATL28_ARATH RING-H2 finger protein ATL28 OS=Arabidopsis thaliana GN=ATL28 PE=2
SV=1
Length = 254
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 46 IRGFPWFD----CQRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCP 101
IR FP F ++N CA+CL + R ++C+H FH+ CIDLW TCP
Sbjct: 83 IRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCP 142
Query: 102 TCR 104
CR
Sbjct: 143 VCR 145
>sp|O22755|ATL44_ARATH RING-H2 finger protein ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2
SV=1
Length = 185
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
CA+CL GE R +C H FH CID WLV R +CP+CR
Sbjct: 102 CAICLTDFADGEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCR 144
>sp|Q9FKX5|NIPL1_ARATH NEP1-interacting protein-like 1 OS=Arabidopsis thaliana GN=ATL27
PE=2 SV=1
Length = 221
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 23 EDYRLYNNTASSTDGISGFSLEKIRGFPWFDCQRNLAAICAVCLDGVHKGERSRNFSICK 82
+D+ +TA S G++G SL +I D + + C+VCL GE R+ C
Sbjct: 139 QDHTDIFDTAIS-KGLTGDSLNRIPKVRITDTSPEIVS-CSVCLQDFQVGETVRSLPHCH 196
Query: 83 HVFHARCIDLWLVRRLTCPTCR 104
H+FH CID WL R +CP CR
Sbjct: 197 HMFHLPCIDKWLRRHASCPLCR 218
>sp|Q9SLC4|ATL40_ARATH RING-H2 finger protein ATL40 OS=Arabidopsis thaliana GN=ATL40 PE=2
SV=1
Length = 217
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111
CAVCL + + + +R CKHVFH C+D WL + TCP CR+ + EP
Sbjct: 100 CAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRT--EAEP 147
>sp|Q9LRB7|EL5_ORYSJ E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica
GN=EL5.1 PE=1 SV=1
Length = 325
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
CAVCL + GE +R C H FHA C+D+WL TCP CR
Sbjct: 134 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111
CA+CL+ E R C H FHA CID+WL R TCP CR+ +P
Sbjct: 128 CAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKP 177
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 21 FNEDYRLYNNTASSTDGISGFSLEKI-----RGFPWFDCQRNLAAICAVCLDGVHKGERS 75
F++ L++ S G++G +EKI G D N + C+VCL GE
Sbjct: 153 FDDHTSLFDTGGSK--GLTGDLVEKIPKMTITGNNNTDASENTDS-CSVCLQDFQLGETV 209
Query: 76 RNFSICKHVFHARCIDLWLVRRLTCPTCR 104
R+ C H+FH CID WL+R +CP CR
Sbjct: 210 RSLPHCHHMFHLPCIDNWLLRHGSCPMCR 238
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 36 DGISGFSLEKI-----RGFPWFDCQRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCI 90
D I G + E+I R + L +C+VC+ G + R C H FH CI
Sbjct: 583 DPIRGLTKEQIDNLSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLP-CLHEFHIHCI 641
Query: 91 DLWLVRRLTCPTCRSP 106
D WL TCP CR P
Sbjct: 642 DRWLSENCTCPVCRRP 657
>sp|Q9LZV8|ATL74_ARATH RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2
SV=1
Length = 159
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 39 SGFSLEKIRGFP---WFDCQRNLAAI-CAVCLDGVHKGERSRNFSICKHVFHARCIDLWL 94
+G +++ FP + + +AA CA+CL GER R C H FH CID WL
Sbjct: 78 AGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWL 137
Query: 95 VRRLTCPTCR 104
V +CP CR
Sbjct: 138 VSHSSCPNCR 147
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRS 105
CA+CL+ + E R IC H+FH CID WL TCP CRS
Sbjct: 124 CAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRS 167
>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2
SV=2
Length = 304
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 29 NNTASSTDGISGFSLEKIRGFPWF---DCQRNLAAICAVCLDGVHKGERSRNFSICKHVF 85
+ A+S G I+ P F D CAVCL + E R C+H F
Sbjct: 83 STAATSVVASRGLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTF 142
Query: 86 HARCIDLWLVRRLTCPTCRS 105
H CID+W TCP CRS
Sbjct: 143 HVDCIDMWFHSHSTCPLCRS 162
>sp|Q8L9W3|ATL23_ARATH E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana GN=ATL23
PE=1 SV=2
Length = 163
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 34 STDGISGFSLEKIRGFPWFDCQRNLAAI-----CAVCLDGVHKGERSRNFSICKHVFHAR 88
+ G+S LEKI R LA I CAVCL+ + G+ +R C H FH
Sbjct: 75 TGKGLSVLELEKIPKL----TGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQL 130
Query: 89 CIDLWLVRRLTCPTCRS 105
C D WL CP CR+
Sbjct: 131 CADTWLSNHTVCPVCRA 147
>sp|Q9ZT49|ATL45_ARATH RING-H2 finger protein ATL45 OS=Arabidopsis thaliana GN=ATL45 PE=2
SV=1
Length = 200
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
CA+C+ +GE R +C H FH CID WL R +CP+CR
Sbjct: 113 CAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCR 155
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111
CA+CL E R C H FHA CID+WL + TCP CR+ ++P
Sbjct: 123 CAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANLSLKP 172
>sp|Q9LS99|ATL77_ARATH RING-H2 finger protein ATL77 OS=Arabidopsis thaliana GN=ATL77 PE=2
SV=1
Length = 220
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 25/43 (58%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
C +CL GE+ R C H FH RCID WL + +TCP CR
Sbjct: 130 CVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCR 172
>sp|Q8LF65|ATL17_ARATH RING-H2 finger protein ATL17 OS=Arabidopsis thaliana GN=ATL17 PE=2
SV=2
Length = 235
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 15 SSPVIDFNEDYRLYNNTASSTDGISGFSLEKIRGFPWFDCQRNLAAICAVCLDGVHKGER 74
SSP + + +S+ G++ ++ + F + A C+VCL E
Sbjct: 29 SSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFSAVTALFAMECSVCLSEFKDNES 88
Query: 75 SRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111
R CKH FH CID+W +CP CRS ++EP
Sbjct: 89 GRVMPNCKHTFHVHCIDMWFHSHSSCPLCRS--QIEP 123
>sp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2
SV=1
Length = 236
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 23/43 (53%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
C+VCL E+ + C H FH CIDLWL TCP CR
Sbjct: 111 CSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCR 153
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 40 GFSLEKIRGFPWFDCQR-------NLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92
G E I FP F CA+CL E R C H FHA CID+
Sbjct: 94 GLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDV 153
Query: 93 WLVRRLTCPTCRSPFKMEP 111
WL TCP CR+ ++P
Sbjct: 154 WLSSWSTCPVCRANLSLKP 172
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%)
Query: 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRS 105
A CA+CL +GE + C+H FH +CI WL R +CPTCR+
Sbjct: 105 AECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRT 150
>sp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2
SV=1
Length = 237
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 40 GFSLEKIRGFPWFDC-----QRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWL 94
G + +R P + QRN C +CL +GE + C HVFH C+D WL
Sbjct: 115 GLDSQAVRSLPVYRYTKAAKQRN--EDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWL 172
Query: 95 VRRLTCPTCRS 105
+TCP CRS
Sbjct: 173 SSYVTCPLCRS 183
>sp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL39 OS=Arabidopsis thaliana GN=ATL39 PE=2
SV=1
Length = 132
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 40 GFSLEKIRGFPWF------DCQRNLAAI-CAVCLDGVHKGERSRNFSICKHVFHARCIDL 92
G E I+ FP F + + + C VCL+ E R C HVFHA C+D+
Sbjct: 56 GLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDI 115
Query: 93 WLVRRLTCPTCRS 105
WL TCP CR+
Sbjct: 116 WLSHSSTCPICRA 128
>sp|Q8H7N9|ATL31_ORYSJ E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp.
japonica GN=Os03g0188200 PE=2 SV=1
Length = 353
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 44 EKIRGFP---WFDCQRNLAAI-----CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV 95
E + FP + D + +AA CAVCL + R C HVFH CID WL
Sbjct: 107 EVVEAFPTAVYGDVKARMAAKSGPLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWLA 166
Query: 96 RRLTCPTCRSPFKMEPV 112
+TCP CR+ PV
Sbjct: 167 AAVTCPLCRANLTAPPV 183
>sp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59
PE=1 SV=1
Length = 225
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 25/50 (50%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111
C+VCL E+ + C H FH CIDLWL TCP CR +P
Sbjct: 97 CSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKP 146
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 40 GFSLEKIRGFPWF-----DCQR--NLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92
G E I FP F Q+ A CA+CL+ E R C HVFH CI
Sbjct: 95 GLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGA 154
Query: 93 WLVRRLTCPTCRS 105
WL +TCP CR+
Sbjct: 155 WLQGHVTCPVCRT 167
>sp|Q9LUZ9|ATL63_ARATH RING-H2 finger protein ATL63 OS=Arabidopsis thaliana GN=ATL63 PE=2
SV=1
Length = 308
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSP 106
C +CL G+ R C H FH CID+WL TCP CRSP
Sbjct: 138 CVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSP 182
>sp|Q9FLC6|ATL73_ARATH RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2
SV=1
Length = 176
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 22 NEDYRLYNNTASSTDGISGFSLEKIRGFPWFDCQRNLAAICAVCLDGVHKGERSRNFSIC 81
NED + A+ GI +L+ I + + A C +CL +GE R C
Sbjct: 75 NEDP--VDTNANVAKGIKKRALKVIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKC 132
Query: 82 KHVFHARCIDLWLVRRLTCPTCRSPF 107
H FH +CID WL+ +CPTCR
Sbjct: 133 NHGFHVKCIDTWLLSHSSCPTCRQSL 158
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 6 LFQMLSSSASS-PVIDFNEDYRLYNNTASSTDGI-----SGFSLEKIRGFPWFDCQRNLA 59
+F+ L S++ P+ FN + L++ ++ + SG I P F
Sbjct: 140 IFKFLRKSSTLFPIPHFNYNPDLFSFSSPQLQHLFFLHDSGLDQTAIDALPVFLYGNVTI 199
Query: 60 AI-----CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
++ CAVCL+ ++ R +C H FH CID WL+ TCP CR
Sbjct: 200 SLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCR 249
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRS 105
CA+CL+ E R C HVFH CID WL +TCP CR+
Sbjct: 128 CAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCRA 171
>sp|Q9LZJ6|ATL5_ARATH RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=1
Length = 257
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108
C+VCL + + R C HVFH CID W R +CP CR+P +
Sbjct: 113 CSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQ 159
>sp|Q8GT75|NIP1_ARATH NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1
SV=2
Length = 236
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 45 KIRGFPWFDCQRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
KI G D N + C+VCL GE R+ C H+FH CID WL R +CP CR
Sbjct: 175 KITGKNNLDASGNKDS-CSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPMCR 233
>sp|P0C035|ATL60_ARATH RING-H2 finger protein ATL60 OS=Arabidopsis thaliana GN=ATL60 PE=2
SV=1
Length = 310
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRS 105
CAVCL + G+++R C H FH CID+W TCP CR+
Sbjct: 120 CAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRN 163
>sp|Q9SPL2|CIP8_ARATH E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8
PE=1 SV=1
Length = 334
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 42 SLEKIRGFPWFDCQRNLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCP 101
++E + F + + +CAVC DG+ GE + C H +H CI WL R +CP
Sbjct: 237 AIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLP-CGHCYHGDCIVPWLGTRNSCP 295
Query: 102 TCRSPFKME 110
CR F++E
Sbjct: 296 VCR--FQLE 302
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104
CA+CL+ GE R C H FH RC+D WL++ TCP CR
Sbjct: 266 CAICLEKYIDGEELRVIP-CTHRFHKRCVDPWLLQNHTCPHCR 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,554,239
Number of Sequences: 539616
Number of extensions: 1481335
Number of successful extensions: 4848
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 4468
Number of HSP's gapped (non-prelim): 493
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)