Query 038517
Match_columns 112
No_of_seqs 126 out of 1365
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 20:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.8 1.8E-20 6.3E-25 110.6 7.5 74 35-109 11-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 2.8E-20 9.4E-25 106.0 3.6 65 45-110 5-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.8 3.8E-19 1.3E-23 95.5 4.0 51 58-108 4-54 (55)
4 2ecl_A Ring-box protein 2; RNF 99.7 5.5E-19 1.9E-23 102.1 2.1 54 58-111 14-78 (81)
5 2kiz_A E3 ubiquitin-protein li 99.7 2.6E-18 9E-23 96.2 4.8 52 58-110 13-64 (69)
6 2ect_A Ring finger protein 126 99.7 2.2E-18 7.5E-23 98.7 4.5 53 58-111 14-66 (78)
7 2ep4_A Ring finger protein 24; 99.7 5.3E-18 1.8E-22 96.1 4.7 51 58-109 14-64 (74)
8 2ecm_A Ring finger and CHY zin 99.7 2.4E-17 8.3E-22 88.2 4.0 50 58-108 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.7 1.9E-17 6.6E-22 93.0 3.2 53 58-111 9-65 (71)
10 3dpl_R Ring-box protein 1; ubi 99.7 3.7E-17 1.3E-21 98.8 4.2 52 58-110 36-102 (106)
11 2xeu_A Ring finger protein 4; 99.7 3E-17 1E-21 90.3 2.7 53 58-111 2-58 (64)
12 1v87_A Deltex protein 2; ring- 99.7 1.2E-16 4.1E-21 97.5 5.1 52 58-110 24-95 (114)
13 2ea6_A Ring finger protein 4; 99.7 7.6E-17 2.6E-21 89.9 3.8 51 58-109 14-68 (69)
14 4a0k_B E3 ubiquitin-protein li 99.6 3.4E-17 1.2E-21 100.4 0.2 54 58-111 47-114 (117)
15 2d8s_A Cellular modulator of i 99.6 5.2E-16 1.8E-20 89.3 4.6 51 58-110 14-71 (80)
16 2ct2_A Tripartite motif protei 99.6 6.4E-16 2.2E-20 90.0 4.9 53 58-111 14-70 (88)
17 2djb_A Polycomb group ring fin 99.6 6.4E-16 2.2E-20 87.1 4.5 50 58-111 14-64 (72)
18 2d8t_A Dactylidin, ring finger 99.6 5.1E-16 1.7E-20 87.3 3.4 48 58-109 14-61 (71)
19 2ysl_A Tripartite motif-contai 99.6 1.6E-15 5.5E-20 85.5 5.2 51 58-112 19-72 (73)
20 2ecy_A TNF receptor-associated 99.6 1.3E-15 4.4E-20 84.5 4.5 51 58-112 14-65 (66)
21 2ecn_A Ring finger protein 141 99.6 4.6E-16 1.6E-20 87.2 2.7 48 58-110 14-61 (70)
22 1chc_A Equine herpes virus-1 r 99.6 7.7E-16 2.6E-20 85.7 3.6 48 58-108 4-51 (68)
23 4ayc_A E3 ubiquitin-protein li 99.6 7.4E-16 2.5E-20 97.0 3.1 48 58-109 52-99 (138)
24 3lrq_A E3 ubiquitin-protein li 99.6 1.5E-15 5E-20 90.8 3.1 50 58-111 21-72 (100)
25 1t1h_A Gspef-atpub14, armadill 99.6 5E-15 1.7E-19 84.5 5.0 50 58-111 7-57 (78)
26 2csy_A Zinc finger protein 183 99.5 4.7E-15 1.6E-19 85.3 4.4 47 58-108 14-60 (81)
27 1g25_A CDK-activating kinase a 99.5 7.8E-15 2.7E-19 81.0 4.9 53 58-111 2-57 (65)
28 4ap4_A E3 ubiquitin ligase RNF 99.5 3.1E-15 1.1E-19 92.8 3.2 53 58-111 6-62 (133)
29 2yur_A Retinoblastoma-binding 99.5 6.6E-15 2.3E-19 83.4 4.0 49 58-109 14-64 (74)
30 2ecw_A Tripartite motif-contai 99.5 1.1E-14 3.8E-19 84.0 4.7 50 58-111 18-73 (85)
31 2y43_A E3 ubiquitin-protein li 99.5 6.2E-15 2.1E-19 87.8 3.7 50 58-110 21-70 (99)
32 2ecv_A Tripartite motif-contai 99.5 1.2E-14 4.2E-19 83.8 3.9 50 58-111 18-73 (85)
33 2egp_A Tripartite motif-contai 99.5 3E-15 1E-19 85.5 1.2 49 58-110 11-66 (79)
34 2ct0_A Non-SMC element 1 homol 99.5 2E-14 6.7E-19 81.4 4.1 50 58-110 14-65 (74)
35 2ckl_A Polycomb group ring fin 99.5 3E-14 1E-18 86.0 4.8 49 58-110 14-63 (108)
36 3fl2_A E3 ubiquitin-protein li 99.5 3.5E-14 1.2E-18 87.7 4.5 48 58-109 51-99 (124)
37 4ap4_A E3 ubiquitin ligase RNF 99.5 1.8E-14 6.2E-19 89.3 2.5 53 58-111 71-127 (133)
38 2ysj_A Tripartite motif-contai 99.5 6.4E-14 2.2E-18 76.8 4.3 42 58-103 19-63 (63)
39 1jm7_A BRCA1, breast cancer ty 99.4 4.2E-14 1.4E-18 85.6 3.6 50 58-111 20-72 (112)
40 3ztg_A E3 ubiquitin-protein li 99.4 1.1E-13 3.8E-18 81.2 4.4 47 58-107 12-60 (92)
41 2ecj_A Tripartite motif-contai 99.4 1.2E-13 4E-18 74.4 3.5 42 58-103 14-58 (58)
42 3hct_A TNF receptor-associated 99.4 8E-14 2.7E-18 85.5 3.1 49 58-110 17-66 (118)
43 1rmd_A RAG1; V(D)J recombinati 99.4 8.5E-14 2.9E-18 85.0 3.2 49 58-110 22-71 (116)
44 1z6u_A NP95-like ring finger p 99.4 1.6E-13 5.4E-18 87.5 4.5 49 58-110 77-126 (150)
45 2ckl_B Ubiquitin ligase protei 99.4 2.1E-13 7.3E-18 87.9 4.2 48 58-109 53-102 (165)
46 2kr4_A Ubiquitin conjugation f 99.4 3.2E-13 1.1E-17 78.4 4.0 50 58-111 13-62 (85)
47 2kre_A Ubiquitin conjugation f 99.4 4.5E-13 1.5E-17 80.0 4.6 50 58-111 28-77 (100)
48 1e4u_A Transcriptional repress 99.4 9.8E-13 3.3E-17 75.2 5.5 53 58-111 10-64 (78)
49 3l11_A E3 ubiquitin-protein li 99.4 6.8E-14 2.3E-18 85.3 0.5 47 58-108 14-61 (115)
50 1wgm_A Ubiquitin conjugation f 99.4 7.4E-13 2.5E-17 78.8 5.0 50 58-111 21-71 (98)
51 2vje_A E3 ubiquitin-protein li 99.3 8.3E-13 2.8E-17 72.8 3.8 47 58-108 7-56 (64)
52 3knv_A TNF receptor-associated 99.3 5.7E-13 2E-17 84.1 3.0 48 58-109 30-78 (141)
53 1jm7_B BARD1, BRCA1-associated 99.3 4.7E-13 1.6E-17 81.9 1.6 47 58-110 21-68 (117)
54 2y1n_A E3 ubiquitin-protein li 99.3 2.3E-12 7.8E-17 92.8 4.8 48 59-110 332-380 (389)
55 2vje_B MDM4 protein; proto-onc 99.3 3.2E-12 1.1E-16 70.2 3.7 47 58-108 6-55 (63)
56 1bor_A Transcription factor PM 99.3 9.6E-13 3.3E-17 70.6 1.4 46 58-110 5-50 (56)
57 4ic3_A E3 ubiquitin-protein li 99.2 2.3E-12 7.7E-17 72.9 1.8 44 58-109 23-67 (74)
58 3hcs_A TNF receptor-associated 99.2 5.5E-12 1.9E-16 81.6 3.1 49 58-110 17-66 (170)
59 2c2l_A CHIP, carboxy terminus 99.2 1.3E-11 4.4E-16 84.8 3.6 50 58-111 207-257 (281)
60 3k1l_B Fancl; UBC, ring, RWD, 99.2 3.1E-12 1.1E-16 90.5 0.5 51 58-108 307-372 (381)
61 2yu4_A E3 SUMO-protein ligase 99.2 1E-11 3.6E-16 73.2 2.2 49 58-109 6-63 (94)
62 1vyx_A ORF K3, K3RING; zinc-bi 99.1 6.6E-11 2.3E-15 64.3 4.0 48 58-109 5-59 (60)
63 2ecg_A Baculoviral IAP repeat- 99.1 4E-11 1.4E-15 67.8 2.2 44 58-109 24-68 (75)
64 2f42_A STIP1 homology and U-bo 99.1 9.6E-11 3.3E-15 76.5 3.9 49 58-110 105-154 (179)
65 2ea5_A Cell growth regulator w 99.0 3.6E-10 1.2E-14 62.8 4.2 44 58-109 14-58 (68)
66 1wim_A KIAA0161 protein; ring 99.0 1.4E-10 4.8E-15 68.2 2.6 48 58-106 4-61 (94)
67 2yho_A E3 ubiquitin-protein li 99.0 9.7E-11 3.3E-15 67.0 1.8 43 58-108 17-60 (79)
68 2bay_A PRE-mRNA splicing facto 98.9 5E-10 1.7E-14 61.0 2.6 50 59-111 3-52 (61)
69 3htk_C E3 SUMO-protein ligase 98.9 7.8E-10 2.7E-14 75.8 2.3 49 58-110 180-233 (267)
70 3t6p_A Baculoviral IAP repeat- 98.8 6.2E-10 2.1E-14 79.3 1.5 44 58-109 294-338 (345)
71 3vk6_A E3 ubiquitin-protein li 98.6 2.7E-08 9.2E-13 58.6 3.9 45 61-108 3-48 (101)
72 3nw0_A Non-structural maintena 98.5 1.2E-07 4E-12 64.4 5.0 49 59-110 180-230 (238)
73 2ko5_A Ring finger protein Z; 96.7 0.0011 3.6E-08 38.5 2.6 46 58-109 27-73 (99)
74 2lri_C Autoimmune regulator; Z 96.5 0.0027 9.2E-08 34.6 3.3 50 58-111 11-64 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 96.5 0.0022 7.6E-08 37.4 3.0 35 59-94 3-38 (101)
76 1we9_A PHD finger family prote 95.4 0.004 1.4E-07 33.4 0.8 49 58-106 5-58 (64)
77 3lqh_A Histone-lysine N-methyl 95.0 0.011 3.9E-07 38.4 2.1 49 59-107 2-64 (183)
78 2l5u_A Chromodomain-helicase-D 94.2 0.043 1.5E-06 29.1 2.9 46 57-106 9-58 (61)
79 3m62_A Ubiquitin conjugation f 94.0 0.057 1.9E-06 43.2 4.3 50 58-111 890-940 (968)
80 1wil_A KIAA1045 protein; ring 93.7 0.08 2.7E-06 30.0 3.4 34 58-93 14-47 (89)
81 2vpb_A Hpygo1, pygopus homolog 93.3 0.09 3.1E-06 28.3 3.1 34 58-91 7-41 (65)
82 2k16_A Transcription initiatio 92.8 0.042 1.4E-06 30.2 1.4 50 58-108 17-70 (75)
83 1f62_A Transcription factor WS 92.7 0.07 2.4E-06 27.0 2.1 44 61-105 2-49 (51)
84 1wep_A PHF8; structural genomi 91.9 0.16 5.5E-06 28.2 3.0 48 59-107 12-64 (79)
85 2kgg_A Histone demethylase jar 91.8 0.057 2E-06 27.6 1.1 44 61-104 4-52 (52)
86 3o36_A Transcription intermedi 90.4 0.091 3.1E-06 33.8 1.2 46 58-107 3-52 (184)
87 1mm2_A MI2-beta; PHD, zinc fin 90.1 0.084 2.9E-06 27.9 0.7 46 58-107 8-57 (61)
88 2l43_A N-teminal domain from h 89.8 0.052 1.8E-06 31.0 -0.3 52 58-109 24-78 (88)
89 2xb1_A Pygopus homolog 2, B-ce 89.2 0.26 9E-06 28.9 2.5 49 59-107 3-62 (105)
90 2e6s_A E3 ubiquitin-protein li 88.9 0.069 2.4E-06 29.7 -0.2 47 58-105 25-76 (77)
91 3u5n_A E3 ubiquitin-protein li 88.9 0.11 3.7E-06 34.1 0.7 46 58-107 6-55 (207)
92 2cs3_A Protein C14ORF4, MY039 88.7 0.63 2.2E-05 26.1 3.6 39 58-96 14-52 (93)
93 1weo_A Cellulose synthase, cat 88.5 1.6 5.6E-05 24.9 5.3 51 58-108 15-69 (93)
94 3v43_A Histone acetyltransfera 88.4 0.15 5E-06 30.3 1.0 47 59-105 61-111 (112)
95 1fp0_A KAP-1 corepressor; PHD 88.2 0.3 1E-05 27.9 2.2 48 56-107 22-73 (88)
96 2ysm_A Myeloid/lymphoid or mix 87.9 0.14 4.8E-06 30.2 0.7 37 58-95 6-42 (111)
97 2ri7_A Nucleosome-remodeling f 87.5 0.14 4.9E-06 32.5 0.6 47 58-105 7-58 (174)
98 2lbm_A Transcriptional regulat 87.4 0.97 3.3E-05 28.1 4.3 44 58-105 62-116 (142)
99 3asl_A E3 ubiquitin-protein li 87.3 0.076 2.6E-06 29.0 -0.7 45 61-106 20-69 (70)
100 2yql_A PHD finger protein 21A; 87.2 0.057 1.9E-06 28.1 -1.2 44 58-105 8-55 (56)
101 4fo9_A E3 SUMO-protein ligase 87.0 0.55 1.9E-05 33.6 3.4 51 58-111 214-268 (360)
102 3i2d_A E3 SUMO-protein ligase 86.7 0.59 2E-05 33.6 3.4 51 58-111 248-302 (371)
103 3v43_A Histone acetyltransfera 85.9 1.7 5.9E-05 25.5 4.7 33 59-91 5-42 (112)
104 2puy_A PHD finger protein 21A; 85.9 0.12 4.2E-06 27.1 -0.3 45 58-106 4-52 (60)
105 1wem_A Death associated transc 85.8 0.45 1.5E-05 26.0 2.0 47 59-107 16-71 (76)
106 1xwh_A Autoimmune regulator; P 85.4 0.13 4.4E-06 27.6 -0.4 45 58-106 7-55 (66)
107 2gmg_A Hypothetical protein PF 84.4 0.23 8E-06 29.3 0.4 26 81-111 73-98 (105)
108 3ql9_A Transcriptional regulat 83.7 2.2 7.5E-05 26.0 4.5 44 58-105 56-110 (129)
109 3o70_A PHD finger protein 13; 83.0 0.25 8.6E-06 26.7 0.1 46 58-105 18-66 (68)
110 2yt5_A Metal-response element- 82.7 0.65 2.2E-05 24.6 1.7 51 58-108 5-63 (66)
111 1wyh_A SLIM 2, skeletal muscle 82.6 0.68 2.3E-05 24.6 1.8 40 60-109 6-45 (72)
112 2yw8_A RUN and FYVE domain-con 82.3 1 3.4E-05 25.1 2.5 35 58-92 18-52 (82)
113 3ask_A E3 ubiquitin-protein li 82.3 0.28 9.5E-06 32.9 0.1 47 59-106 174-225 (226)
114 2o35_A Hypothetical protein DU 82.0 0.57 2E-05 27.3 1.3 12 84-95 42-53 (105)
115 3fyb_A Protein of unknown func 82.0 0.58 2E-05 27.2 1.3 12 84-95 41-52 (104)
116 1weu_A Inhibitor of growth fam 81.9 1.6 5.5E-05 24.9 3.3 46 58-108 35-87 (91)
117 1wen_A Inhibitor of growth fam 81.6 1.8 6.1E-05 23.5 3.3 46 58-108 15-67 (71)
118 2co8_A NEDD9 interacting prote 81.1 1.1 3.8E-05 24.6 2.4 41 58-109 14-54 (82)
119 2ku3_A Bromodomain-containing 80.9 2 6.9E-05 23.3 3.3 48 58-105 15-65 (71)
120 1x4k_A Skeletal muscle LIM-pro 80.8 0.91 3.1E-05 24.0 1.9 39 60-108 6-44 (72)
121 2e6r_A Jumonji/ARID domain-con 80.1 0.12 4.3E-06 29.6 -1.9 47 58-105 15-65 (92)
122 3shb_A E3 ubiquitin-protein li 80.1 0.23 7.8E-06 27.6 -0.8 44 61-105 28-76 (77)
123 2ro1_A Transcription intermedi 79.9 0.62 2.1E-05 30.2 1.1 45 59-107 2-50 (189)
124 3t7l_A Zinc finger FYVE domain 79.5 1.5 5E-05 24.9 2.5 36 58-93 19-54 (90)
125 1joc_A EEA1, early endosomal a 79.5 1.4 4.7E-05 26.6 2.5 35 58-92 68-102 (125)
126 1x63_A Skeletal muscle LIM-pro 79.3 1.3 4.3E-05 24.1 2.2 41 59-109 15-55 (82)
127 1vfy_A Phosphatidylinositol-3- 79.1 1.6 5.5E-05 23.6 2.6 33 60-92 12-44 (73)
128 1x4l_A Skeletal muscle LIM-pro 78.7 1.2 4.2E-05 23.6 2.0 40 60-109 6-47 (72)
129 1x61_A Thyroid receptor intera 78.6 1.2 4.2E-05 23.5 2.0 14 82-95 53-66 (72)
130 3c6w_A P28ING5, inhibitor of g 77.7 0.8 2.7E-05 23.9 1.0 43 58-105 8-57 (59)
131 2cu8_A Cysteine-rich protein 2 77.6 0.98 3.4E-05 24.3 1.4 40 59-109 9-48 (76)
132 2lv9_A Histone-lysine N-methyl 77.5 0.47 1.6E-05 27.4 0.0 44 60-105 29-75 (98)
133 1x68_A FHL5 protein; four-and- 77.4 1.4 4.8E-05 23.7 2.0 41 59-109 5-47 (76)
134 1z2q_A LM5-1; membrane protein 77.3 1.8 6.3E-05 24.1 2.5 36 58-93 20-55 (84)
135 1wew_A DNA-binding family prot 77.1 0.73 2.5E-05 25.4 0.8 48 58-107 15-73 (78)
136 1wfk_A Zinc finger, FYVE domai 77.0 1.8 6.3E-05 24.4 2.4 35 58-92 8-42 (88)
137 1y02_A CARP2, FYVE-ring finger 75.9 0.31 1.1E-05 29.4 -1.1 47 58-104 18-64 (120)
138 1dvp_A HRS, hepatocyte growth 75.8 1.5 5E-05 28.9 2.1 35 58-92 160-194 (220)
139 1g47_A Pinch protein; LIM doma 75.2 0.97 3.3E-05 24.3 0.9 40 59-108 11-50 (77)
140 2kwj_A Zinc finger protein DPF 75.2 2.7 9.3E-05 24.7 3.0 34 60-93 2-41 (114)
141 1iml_A CRIP, cysteine rich int 74.9 0.81 2.8E-05 24.6 0.5 45 58-107 26-71 (76)
142 3zyq_A Hepatocyte growth facto 74.7 1.6 5.6E-05 28.9 2.1 36 58-93 163-198 (226)
143 4gne_A Histone-lysine N-methyl 74.6 3.5 0.00012 24.2 3.3 44 58-107 14-63 (107)
144 1z60_A TFIIH basal transcripti 74.2 2 6.9E-05 22.5 2.0 43 60-103 16-58 (59)
145 1zbd_B Rabphilin-3A; G protein 73.2 2.2 7.4E-05 26.1 2.2 33 58-91 54-88 (134)
146 1x4u_A Zinc finger, FYVE domai 72.3 2.5 8.6E-05 23.5 2.2 35 58-92 13-47 (84)
147 3f6q_B LIM and senescent cell 71.9 1.6 5.4E-05 22.9 1.3 42 58-109 10-51 (72)
148 2ehe_A Four and A half LIM dom 71.1 2.3 7.7E-05 23.1 1.8 41 59-109 15-55 (82)
149 2vnf_A ING 4, P29ING4, inhibit 70.3 1.5 5E-05 22.9 0.9 43 58-105 9-58 (60)
150 2d8v_A Zinc finger FYVE domain 70.1 2 6.8E-05 23.1 1.3 30 60-94 9-39 (67)
151 3a1b_A DNA (cytosine-5)-methyl 68.5 5.8 0.0002 25.0 3.4 35 58-96 78-114 (159)
152 2dj7_A Actin-binding LIM prote 68.3 2.1 7.3E-05 23.3 1.3 40 58-108 14-53 (80)
153 1wev_A Riken cDNA 1110020M19; 67.6 2.8 9.4E-05 23.6 1.7 48 58-105 15-71 (88)
154 3mjh_B Early endosome antigen 66.3 1.4 4.7E-05 20.5 0.2 14 58-71 4-17 (34)
155 2egq_A FHL1 protein; LIM domai 66.1 2.9 9.8E-05 22.3 1.5 42 59-110 15-59 (77)
156 2a20_A Regulating synaptic mem 65.9 0.28 9.6E-06 25.8 -2.5 47 58-105 8-59 (62)
157 1wee_A PHD finger family prote 65.8 2.4 8.3E-05 22.8 1.2 48 58-106 15-66 (72)
158 1a7i_A QCRP2 (LIM1); LIM domai 65.1 1.3 4.3E-05 24.1 -0.1 28 60-90 8-35 (81)
159 2l3k_A Rhombotin-2, linker, LI 64.8 2.1 7.1E-05 25.4 0.8 34 59-94 36-69 (123)
160 2cup_A Skeletal muscle LIM-pro 64.6 3.7 0.00013 23.1 1.9 46 58-108 32-77 (101)
161 1nyp_A Pinch protein; LIM doma 64.5 3.2 0.00011 21.4 1.5 39 59-109 5-43 (66)
162 2d8y_A Eplin protein; LIM doma 63.9 3.6 0.00012 22.8 1.7 28 60-90 16-43 (91)
163 1x64_A Alpha-actinin-2 associa 63.6 6.1 0.00021 21.7 2.7 40 58-109 24-63 (89)
164 2rsd_A E3 SUMO-protein ligase 63.3 0.53 1.8E-05 25.2 -1.8 44 60-105 11-64 (68)
165 1m3v_A FLIN4, fusion of the LI 63.3 6 0.00021 23.2 2.7 49 59-109 32-81 (122)
166 2iyb_E Testin, TESS, TES; LIM 63.2 3.1 0.00011 21.5 1.3 41 60-110 3-45 (65)
167 2d8z_A Four and A half LIM dom 63.1 3.7 0.00013 21.4 1.6 36 61-108 7-42 (70)
168 2dar_A PDZ and LIM domain prot 63.1 3.3 0.00011 22.9 1.4 40 58-109 24-63 (90)
169 2zet_C Melanophilin; complex, 62.5 4.7 0.00016 25.2 2.2 32 58-90 67-100 (153)
170 2pv0_B DNA (cytosine-5)-methyl 61.5 8.1 0.00028 27.9 3.5 34 58-95 92-127 (386)
171 3mpx_A FYVE, rhogef and PH dom 60.7 1.8 6.1E-05 31.0 0.0 50 58-107 374-430 (434)
172 1zfo_A LAsp-1; LIM domain, zin 60.6 5 0.00017 17.8 1.6 29 59-90 3-31 (31)
173 3kqi_A GRC5, PHD finger protei 60.4 7.2 0.00025 21.0 2.5 45 62-106 12-61 (75)
174 2cuq_A Four and A half LIM dom 59.1 4.8 0.00017 21.5 1.7 37 60-108 16-52 (80)
175 1v6g_A Actin binding LIM prote 56.1 6 0.0002 21.3 1.7 38 59-108 15-52 (81)
176 2cur_A Skeletal muscle LIM-pro 55.2 5.7 0.00019 20.6 1.5 9 61-69 7-15 (69)
177 1x62_A C-terminal LIM domain p 54.8 4.1 0.00014 21.9 0.9 37 59-107 15-51 (79)
178 2d8x_A Protein pinch; LIM doma 54.3 5.1 0.00017 20.9 1.2 10 61-70 7-16 (70)
179 2jvx_A NF-kappa-B essential mo 54.0 2.6 9E-05 18.6 -0.0 11 98-108 4-14 (28)
180 2jne_A Hypothetical protein YF 54.0 2.9 0.0001 24.2 0.1 42 58-108 31-72 (101)
181 1wig_A KIAA1808 protein; LIM d 52.5 6.2 0.00021 20.9 1.4 9 81-89 23-31 (73)
182 2xjy_A Rhombotin-2; oncoprotei 51.2 11 0.00039 22.1 2.5 8 100-107 97-104 (131)
183 2pk7_A Uncharacterized protein 50.9 3.2 0.00011 22.4 -0.0 16 93-108 4-19 (69)
184 2cor_A Pinch protein; LIM doma 50.3 7.1 0.00024 21.0 1.4 39 59-109 15-53 (79)
185 2jmo_A Parkin; IBR, E3 ligase, 50.2 1 3.4E-05 25.0 -2.2 14 80-93 55-68 (80)
186 1wd2_A Ariadne-1 protein homol 49.7 2.4 8.4E-05 22.1 -0.6 37 60-96 7-47 (60)
187 2l4z_A DNA endonuclease RBBP8, 47.5 5.6 0.00019 23.6 0.7 40 58-108 60-99 (123)
188 3kv4_A PHD finger protein 8; e 47.3 4.6 0.00016 29.7 0.3 46 61-106 6-56 (447)
189 2dlo_A Thyroid receptor-intera 46.6 6.3 0.00022 21.2 0.8 37 60-108 16-52 (81)
190 2jrp_A Putative cytoplasmic pr 46.3 8.2 0.00028 21.5 1.2 10 61-70 4-13 (81)
191 1rut_X Flinc4, fusion protein 46.2 6.4 0.00022 25.0 0.9 37 61-107 71-107 (188)
192 2ct7_A Ring finger protein 31; 45.5 1.7 5.7E-05 24.3 -1.8 18 76-93 44-61 (86)
193 2jny_A Uncharacterized BCR; st 44.4 2.6 8.8E-05 22.7 -1.0 16 93-108 6-21 (67)
194 2rgt_A Fusion of LIM/homeobox 43.9 10 0.00035 23.6 1.5 8 100-107 96-103 (169)
195 2g6q_A Inhibitor of growth pro 42.9 3.7 0.00013 21.5 -0.6 43 58-105 10-59 (62)
196 1x3h_A Leupaxin; paxillin fami 41.0 11 0.00037 20.0 1.2 37 60-108 16-52 (80)
197 1b8t_A Protein (CRP1); LIM dom 39.3 9.1 0.00031 24.3 0.8 38 60-108 116-153 (192)
198 2xqn_T Testin, TESS; metal-bin 39.0 14 0.00047 21.6 1.5 25 82-108 50-74 (126)
199 3o7a_A PHD finger protein 13 v 38.5 14 0.00048 18.3 1.3 41 64-105 8-51 (52)
200 2lcq_A Putative toxin VAPC6; P 37.9 5.3 0.00018 24.9 -0.5 22 80-107 137-158 (165)
201 3kv5_D JMJC domain-containing 37.8 23 0.00077 26.3 2.8 46 59-105 37-87 (488)
202 2ku7_A MLL1 PHD3-CYP33 RRM chi 36.9 28 0.00094 20.2 2.7 26 80-105 7-43 (140)
203 1l8d_A DNA double-strand break 36.0 7.8 0.00027 22.4 0.0 12 97-108 47-58 (112)
204 4ayb_P DNA-directed RNA polyme 34.3 25 0.00085 17.5 1.7 11 98-108 24-34 (48)
205 2jtn_A LIM domain-binding prot 34.3 13 0.00045 23.3 0.9 46 58-109 86-131 (182)
206 1loi_A Cyclic 3',5'-AMP specif 34.0 1.8 6.2E-05 18.2 -2.1 12 84-95 6-17 (26)
207 2kpi_A Uncharacterized protein 32.3 2.2 7.7E-05 22.0 -2.5 12 96-107 9-20 (56)
208 3pwf_A Rubrerythrin; non heme 31.8 25 0.00085 22.1 1.9 22 78-106 141-162 (170)
209 1j2o_A FLIN2, fusion of rhombo 31.2 26 0.0009 20.1 1.8 35 59-95 30-65 (114)
210 2jr6_A UPF0434 protein NMA0874 29.7 5.2 0.00018 21.5 -1.4 17 93-109 4-20 (68)
211 2k9h_A Glycoprotein; hantaviru 26.6 33 0.0011 17.6 1.4 12 97-108 28-39 (57)
212 2hf1_A Tetraacyldisaccharide-1 26.0 5.2 0.00018 21.5 -1.8 13 97-109 8-20 (68)
213 1yuz_A Nigerythrin; rubrythrin 25.8 44 0.0015 21.6 2.3 21 79-106 175-195 (202)
214 1lko_A Rubrerythrin all-iron(I 25.5 17 0.00059 23.2 0.3 21 80-106 160-180 (191)
215 2roo_A Neurotoxin MAGI-4; spid 25.2 2.1 7.2E-05 20.6 -3.0 16 87-102 18-33 (43)
216 1qdp_A Robustoxin; neurotoxin, 24.6 2.1 7.3E-05 20.4 -3.0 16 87-102 18-33 (42)
217 2jyp_A Aragonite protein AP7; 24.6 30 0.001 15.4 1.0 18 59-76 9-26 (36)
218 1lv3_A Hypothetical protein YA 24.5 15 0.00052 19.7 -0.1 12 97-108 9-20 (68)
219 2akl_A PHNA-like protein PA012 24.1 33 0.0011 20.9 1.3 26 60-85 28-54 (138)
220 2csz_A Synaptotagmin-like prot 23.1 36 0.0012 18.6 1.3 33 58-90 24-57 (76)
221 2jmi_A Protein YNG1, ING1 homo 23.0 37 0.0013 19.1 1.4 43 58-105 25-75 (90)
222 3vhs_A ATPase wrnip1; zinc fin 21.4 29 0.001 14.8 0.5 9 99-107 8-16 (29)
223 4bbq_A Lysine-specific demethy 21.3 29 0.001 20.0 0.7 45 62-106 62-114 (117)
224 4gut_A Lysine-specific histone 20.5 72 0.0025 24.9 3.0 39 58-97 12-57 (776)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=110.55 Aligned_cols=74 Identities=28% Similarity=0.619 Sum_probs=64.4
Q ss_pred CCCCCCCCHHHHcCCCceecCCC-----CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 35 TDGISGFSLEKIRGFPWFDCQRN-----LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 35 ~~~~~~~~~~~~~~l~~~~~~~~-----~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
.....+++++.++.+|....... .+..|+||++.+..++.++.++ |+|.||..||.+|++.+.+||+||+++..
T Consensus 11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 34556677899999998887654 5678999999999888888899 99999999999999999999999998864
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-20 Score=106.01 Aligned_cols=65 Identities=31% Similarity=0.697 Sum_probs=54.8
Q ss_pred HHcCCCceecCCC----CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 45 KIRGFPWFDCQRN----LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 45 ~~~~l~~~~~~~~----~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
.++.+|...++.. .+..|+||++.+..++.++.++ |+|.||..||.+|++.+.+||+||+++...
T Consensus 5 ~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 5 SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3455666655443 6678999999999888888898 999999999999999999999999998764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.76 E-value=3.8e-19 Score=95.47 Aligned_cols=51 Identities=43% Similarity=0.906 Sum_probs=46.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
++..|+||++.+..++.+..++.|+|.||..||.+|++++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 467899999999988888888679999999999999999999999999875
No 4
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.5e-19 Score=102.14 Aligned_cols=54 Identities=26% Similarity=0.688 Sum_probs=43.7
Q ss_pred CccccccccccccC-----------CCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHK-----------GERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~-----------~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
+++.|+||++.+.. ++.++.++.|+|.||..||.+|++++.+||+||+++..++
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 46668888887743 4556666669999999999999999999999999987653
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=96.18 Aligned_cols=52 Identities=35% Similarity=0.929 Sum_probs=47.1
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
.+..|+||++.+..++.++.++ |+|.||..||.+|++.+.+||+||+++...
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 5678999999998878888898 999999999999999999999999988654
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.73 E-value=2.2e-18 Score=98.66 Aligned_cols=53 Identities=34% Similarity=0.809 Sum_probs=48.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
.+..|+||++.|..+..+..++ |+|.||..||.+|++.+.+||+||+++..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 5678999999998888888888 9999999999999999999999999987654
No 7
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.3e-18 Score=96.14 Aligned_cols=51 Identities=37% Similarity=0.859 Sum_probs=46.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
.+..|+||++.+..+..+..++ |+|.||..||.+|++.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 4678999999998888888888 99999999999999999999999998754
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.68 E-value=2.4e-17 Score=88.25 Aligned_cols=50 Identities=26% Similarity=0.716 Sum_probs=43.0
Q ss_pred CccccccccccccCCC-ceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGE-RSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~-~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
.+..|+||++.+..++ .+..++ |+|.||..||.+|++.+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 4678999999986544 466677 9999999999999998899999999875
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.67 E-value=1.9e-17 Score=92.95 Aligned_cols=53 Identities=32% Similarity=0.687 Sum_probs=45.2
Q ss_pred CccccccccccccC----CCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHK----GERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~----~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
++..|+||++.+.. ++.++.++ |||.||..||.+|++++.+||+||+++..+.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 57789999999864 24446777 9999999999999999999999999987664
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.67 E-value=3.7e-17 Score=98.83 Aligned_cols=52 Identities=29% Similarity=0.648 Sum_probs=43.7
Q ss_pred CccccccccccccCC--------------C-ceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKG--------------E-RSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~--------------~-~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
.++.|+||++.|... + .++.++ |+|.||..||.+|+..+.+||+||+++..+
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 578899999998753 1 245566 999999999999999999999999997654
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.66 E-value=3e-17 Score=90.28 Aligned_cols=53 Identities=30% Similarity=0.629 Sum_probs=44.7
Q ss_pred CccccccccccccCC----CceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKG----ERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
++..|+||++.+... +.+..++ |||.||..||.+|++++.+||+||+++..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 356899999998642 3446677 9999999999999999999999999987654
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.65 E-value=1.2e-16 Score=97.45 Aligned_cols=52 Identities=23% Similarity=0.602 Sum_probs=41.5
Q ss_pred CccccccccccccCCC---------------ceeecCCCcCcccHHhHHHHH-----hCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGE---------------RSRNFSICKHVFHARCIDLWL-----VRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~---------------~~~~~~~C~H~fh~~Ci~~w~-----~~~~~CP~Cr~~~~~~ 110 (112)
.++.|+||++.|..+. .+..++ |+|.||..||.+|+ ..+.+||+||+.+..+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 4678999999996543 233566 99999999999999 4577999999987643
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=7.6e-17 Score=89.88 Aligned_cols=51 Identities=31% Similarity=0.639 Sum_probs=43.6
Q ss_pred CccccccccccccCC----CceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKG----ERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
....|+||++.+... +.+..++ |||.||..||.+|++.+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 577899999998643 3346677 99999999999999999999999998864
No 14
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.62 E-value=3.4e-17 Score=100.43 Aligned_cols=54 Identities=28% Similarity=0.717 Sum_probs=1.3
Q ss_pred CccccccccccccCC--------------CceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKG--------------ERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~--------------~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
.++.|+||++.|... +..+.+++|+|.||..||.+|++.+.+||+||+++..++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp CC------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 678999999999642 122332339999999999999999999999999987654
No 15
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=89.35 Aligned_cols=51 Identities=25% Similarity=0.615 Sum_probs=43.3
Q ss_pred CccccccccccccCCCceeecCCCc-----CcccHHhHHHHHhCC--CCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICK-----HVFHARCIDLWLVRR--LTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~ 110 (112)
++..|.||++++..++.+ .+| |+ |.||..||.+|+..+ .+||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 567899999999876665 577 96 999999999999864 5899999998764
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=89.96 Aligned_cols=53 Identities=17% Similarity=0.584 Sum_probs=44.9
Q ss_pred CccccccccccccCCCc-eeecCCCcCcccHHhHHHHHhCC---CCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGER-SRNFSICKHVFHARCIDLWLVRR---LTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~-~~~~~~C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~~~ 111 (112)
....|+||++.+..++. ++.++ |||.||..||.+|++.+ .+||+||+++..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 56789999999976654 67777 99999999999999865 78999999876643
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.4e-16 Score=87.13 Aligned_cols=50 Identities=20% Similarity=0.494 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceeec-CCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNF-SICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
.+..|+||++.+.. ++.+ + |||.||..||.+|++.+.+||+||+++..+.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCChHHHC---cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 46789999999864 4555 6 9999999999999998999999999987654
No 18
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.1e-16 Score=87.31 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=42.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
.+..|+||++.+.. .+.++ |+|.||..||.+|+..+.+||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 56789999999854 56777 99999999999999999999999998864
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=85.46 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=43.4
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh---CCCCCccccCCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV---RRLTCPTCRSPFKMEPV 112 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~---~~~~CP~Cr~~~~~~~~ 112 (112)
.+..|+||++.+.. ++.++ |||.||..||..|++ .+..||+||+++..+.+
T Consensus 19 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 57789999999863 66677 999999999999997 45689999999987754
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=84.48 Aligned_cols=51 Identities=20% Similarity=0.440 Sum_probs=42.9
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh-CCCCCccccCCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-RRLTCPTCRSPFKMEPV 112 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~~~ 112 (112)
.+..|+||++.+.. +..++ |||.||..||.+|++ .+.+||+||+++..+.|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred cCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 46789999999864 44467 999999999999995 56789999999987764
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-16 Score=87.17 Aligned_cols=48 Identities=33% Similarity=0.798 Sum_probs=42.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
.+..|+||++.+.. +.++ |+|.||..||.+|+.++.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 46789999999864 6677 999999999999999999999999988654
No 22
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.59 E-value=7.7e-16 Score=85.73 Aligned_cols=48 Identities=33% Similarity=0.845 Sum_probs=41.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
.+..|+||++.+.. .+..++ |||.||..|+.+|++++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 36689999999853 346777 9999999999999999999999999875
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.57 E-value=7.4e-16 Score=97.01 Aligned_cols=48 Identities=29% Similarity=0.803 Sum_probs=42.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
++..|+||++.+.. ++.++ |||.||..||..|+..+.+||+||+++..
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35679999999854 67788 99999999999999999999999998864
No 24
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.56 E-value=1.5e-15 Score=90.84 Aligned_cols=50 Identities=26% Similarity=0.758 Sum_probs=42.8
Q ss_pred CccccccccccccCCCceee-cCCCcCcccHHhHHHHHhCC-CCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRN-FSICKHVFHARCIDLWLVRR-LTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~-~~~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~~ 111 (112)
++..|+||++.+.. ++. ++ |||.||..||.+|+..+ .+||+||.++..+.
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 46789999999853 666 66 99999999999999877 79999999987653
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.55 E-value=5e-15 Score=84.51 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=43.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC-CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 111 (112)
.+..|+||++.+.. ++.++ |||.||+.||.+|+.+ +.+||+||+++..+.
T Consensus 7 ~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred ccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhh
Confidence 46789999999854 66777 9999999999999987 789999999987653
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.7e-15 Score=85.30 Aligned_cols=47 Identities=19% Similarity=0.465 Sum_probs=41.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
....|+||++.+.. ++.++ |||.||..||.+|++...+||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 46789999999854 56677 9999999999999999999999999875
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.54 E-value=7.8e-15 Score=81.01 Aligned_cols=53 Identities=25% Similarity=0.530 Sum_probs=42.0
Q ss_pred Cccccccccc-cccCCCce-eecCCCcCcccHHhHHHHHhC-CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLD-GVHKGERS-RNFSICKHVFHARCIDLWLVR-RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~-~~~~~~~~-~~~~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 111 (112)
++..|+||++ .+...... ..++ |||.||..||.+|+.+ +.+||+||+++..+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3568999999 77654433 3456 9999999999999765 578999999987664
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.53 E-value=3.1e-15 Score=92.81 Aligned_cols=53 Identities=30% Similarity=0.617 Sum_probs=44.9
Q ss_pred CccccccccccccCC----CceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKG----ERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
++..|+||++.+... +.++.++ |||.||..||.+|++++.+||+||+.+..+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 467899999998642 4447777 9999999999999999999999999887654
No 29
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.53 E-value=6.6e-15 Score=83.39 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=40.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC--CCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR--LTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~ 109 (112)
.+..|+||++.+.. ++.++.|||.||..||.+|++.+ .+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 57789999999864 55565599999999999999865 689999998643
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=1.1e-14 Score=83.95 Aligned_cols=50 Identities=28% Similarity=0.715 Sum_probs=42.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC------CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR------RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~~~~ 111 (112)
.+..|+||++.+.. ...++ |+|.||..||..|+.. ...||+||.++..+.
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred cCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 46789999999854 45677 9999999999999986 678999999987654
No 31
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.52 E-value=6.2e-15 Score=87.76 Aligned_cols=50 Identities=22% Similarity=0.527 Sum_probs=42.2
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
.+..|+||++.+.. ++.+++|||.||..||.+|+..+.+||+||.++..+
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred CCCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence 46789999999864 555523999999999999999999999999988653
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=83.77 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=42.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC------CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR------RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~------~~~CP~Cr~~~~~~~ 111 (112)
....|+||++.+.. +..++ |||.||..|+..|+.. ...||+||..+..+.
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 46789999999864 55667 9999999999999976 789999999887654
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.50 E-value=3e-15 Score=85.50 Aligned_cols=49 Identities=22% Similarity=0.646 Sum_probs=41.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC-------CCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-------RLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-------~~~CP~Cr~~~~~~ 110 (112)
.+..|+||++.+.. ++.++ |||.||..||.+|+.. ...||+||.++..+
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 46789999999864 55677 9999999999999986 67899999988754
No 34
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2e-14 Score=81.39 Aligned_cols=50 Identities=22% Similarity=0.621 Sum_probs=41.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC--CCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR--LTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~ 110 (112)
....|+||.+.+..++... . |+|.||..||.+||+++ .+||+||+++..+
T Consensus 14 ~i~~C~IC~~~i~~g~~C~--~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE--T-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS--S-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccC--C-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 4577999999997654332 4 99999999999999876 8999999998654
No 35
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.48 E-value=3e-14 Score=86.03 Aligned_cols=49 Identities=22% Similarity=0.512 Sum_probs=42.4
Q ss_pred CccccccccccccCCCceeec-CCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNF-SICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
.+..|+||++.+.. ++.+ + |||.||..||..|+..+.+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46789999999854 5565 6 999999999999999999999999988653
No 36
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.47 E-value=3.5e-14 Score=87.72 Aligned_cols=48 Identities=23% Similarity=0.550 Sum_probs=41.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC-CCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR-LTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 109 (112)
.+..|+||++.+.. ++.++ |||.||..||..|+..+ ..||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 46789999999864 67777 99999999999999854 599999999865
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.46 E-value=1.8e-14 Score=89.31 Aligned_cols=53 Identities=30% Similarity=0.617 Sum_probs=44.8
Q ss_pred CccccccccccccCC----CceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKG----ERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~----~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
....|+||++.+... ...+.++ |||.||..||.+|++.+++||+||+++..+.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 678899999998642 3346667 9999999999999999999999999987654
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=6.4e-14 Score=76.80 Aligned_cols=42 Identities=33% Similarity=0.737 Sum_probs=36.2
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh---CCCCCccc
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV---RRLTCPTC 103 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~---~~~~CP~C 103 (112)
.+..|+||++.+.. ++.++ |||.||..||.+|++ .+.+||+|
T Consensus 19 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 57789999999864 66677 999999999999998 45689998
No 39
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.45 E-value=4.2e-14 Score=85.63 Aligned_cols=50 Identities=22% Similarity=0.607 Sum_probs=41.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC---CCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR---LTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~---~~CP~Cr~~~~~~~ 111 (112)
....|+||++.+.. +..++ |||.||..||..|+..+ .+||+||.++..+.
T Consensus 20 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 35679999999854 45567 99999999999999865 48999999887654
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=81.19 Aligned_cols=47 Identities=26% Similarity=0.569 Sum_probs=39.7
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC--CCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR--RLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~ 107 (112)
.+..|+||++.+.. ++.++.|||.||..||.+|+.. ...||+||.++
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 57789999999864 5566559999999999999974 36899999987
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-13 Score=74.37 Aligned_cols=42 Identities=36% Similarity=0.903 Sum_probs=35.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh---CCCCCccc
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV---RRLTCPTC 103 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~---~~~~CP~C 103 (112)
.+..|+||++.+.. .+.++ |||.||..||.+|+. ++.+||+|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46789999999865 45577 999999999999954 56789998
No 42
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.41 E-value=8e-14 Score=85.46 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=42.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCC-CCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRL-TCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 110 (112)
.+..|+||++.+.. ++.++ |||.||..||.+|+..+. +||+||.++..+
T Consensus 17 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence 56789999999864 56677 999999999999998754 999999988754
No 43
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.41 E-value=8.5e-14 Score=85.01 Aligned_cols=49 Identities=31% Similarity=0.551 Sum_probs=42.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC-CCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 110 (112)
.+..|+||++.+.. ++.++ |||.||..||.+|+.. +.+||+||.++..+
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 46789999999854 66677 9999999999999986 78999999988654
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=87.52 Aligned_cols=49 Identities=20% Similarity=0.539 Sum_probs=42.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCC-CCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRL-TCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~ 110 (112)
....|+||++.+.. ++.++ |||.||..||..|+.... .||+||.++..+
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999854 66677 999999999999998754 899999998765
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.39 E-value=2.1e-13 Score=87.94 Aligned_cols=48 Identities=33% Similarity=0.670 Sum_probs=40.9
Q ss_pred CccccccccccccCCCceeec-CCCcCcccHHhHHHHHhC-CCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNF-SICKHVFHARCIDLWLVR-RLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 109 (112)
.+..|+||++.+.. ++.+ + |||.||..||..|+.. +..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN---TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC---cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 45689999999864 5555 6 9999999999999987 7889999998853
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.38 E-value=3.2e-13 Score=78.40 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=44.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
.+..|+||++.+.. +++++ |||.|++.||.+|+.++.+||+||.++..+.
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESM 62 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence 47889999999965 88888 9999999999999998899999999887543
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.38 E-value=4.5e-13 Score=80.04 Aligned_cols=50 Identities=10% Similarity=-0.050 Sum_probs=45.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
.+..|+||++.+.. ++.++ |||.|++.||.+|+..+.+||+||.++..+.
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESM 77 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence 57889999999965 88888 9999999999999998899999999987654
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.37 E-value=9.8e-13 Score=75.23 Aligned_cols=53 Identities=19% Similarity=0.491 Sum_probs=41.3
Q ss_pred CccccccccccccCCCce-eecCCCcCcccHHhHHHHHhC-CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERS-RNFSICKHVFHARCIDLWLVR-RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~-~~~~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 111 (112)
++..|+||++.+...+.. ..++ |||.||..|+..+... ...||.||+++..++
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 567899999988643322 2245 9999999999998753 678999999987654
No 49
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.36 E-value=6.8e-14 Score=85.32 Aligned_cols=47 Identities=21% Similarity=0.639 Sum_probs=40.7
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC-CCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~ 108 (112)
.+..|+||++.+.. ++.++ |||.||..||.+|+.. +..||+||+++.
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 46789999999854 66777 9999999999999976 678999999875
No 50
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.36 E-value=7.4e-13 Score=78.83 Aligned_cols=50 Identities=16% Similarity=0.114 Sum_probs=44.8
Q ss_pred CccccccccccccCCCceeecCCCc-CcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICK-HVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
.+..|+||++.+.. +++++ || |.|++.||.+|+..+.+||+||.++..+.
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence 47889999999965 78888 99 99999999999998899999999987654
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.34 E-value=8.3e-13 Score=72.79 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=39.7
Q ss_pred CccccccccccccCCCceeec--CCCcCc-ccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNF--SICKHV-FHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~--~~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
++..|.||++...+ ...+ | |||. |+..|+..|.+.+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 46789999998643 4444 8 9999 899999999998899999999875
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.32 E-value=5.7e-13 Score=84.13 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=40.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC-CCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR-LTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 109 (112)
.+..|+||++.+.. ++.++ |||.||..||.+|+... .+||+||.++..
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 57789999999864 56677 99999999999999865 489999997643
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.30 E-value=4.7e-13 Score=81.89 Aligned_cols=47 Identities=21% Similarity=0.615 Sum_probs=40.2
Q ss_pred CccccccccccccCCCceeec-CCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNF-SICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
....|+||++.+.. ++.+ + |||.||..||..|+. ..||+||.++...
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence 46789999999854 5666 6 999999999999987 8899999988654
No 54
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.29 E-value=2.3e-12 Score=92.80 Aligned_cols=48 Identities=23% Similarity=0.648 Sum_probs=41.5
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHh-CCCCCccccCCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-RRLTCPTCRSPFKME 110 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~~~ 110 (112)
...|+||++.+.. ++.+| |||.||..|+..|+. .+.+||+||+++...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999998843 77788 999999999999998 688999999987643
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.27 E-value=3.2e-12 Score=70.18 Aligned_cols=47 Identities=17% Similarity=0.417 Sum_probs=38.9
Q ss_pred CccccccccccccCCCceeec--CCCcCc-ccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNF--SICKHV-FHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~--~~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
.+..|.||++.... ...+ | |||. |+..|+..|.+++..||+||+++.
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 46689999997532 3333 7 9998 999999999988899999999875
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.27 E-value=9.6e-13 Score=70.64 Aligned_cols=46 Identities=20% Similarity=0.632 Sum_probs=38.7
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
+...|+||++.+.. ++.++ |||.||..|+..| ...||+||+++..+
T Consensus 5 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 46789999999864 57788 9999999999874 67899999988754
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.23 E-value=2.3e-12 Score=72.91 Aligned_cols=44 Identities=20% Similarity=0.551 Sum_probs=37.7
Q ss_pred CccccccccccccCCCceeecCCCcCc-ccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHV-FHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
++..|+||++.+.. ++.+| |||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 46789999998753 77788 9999 999999988 889999998753
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.21 E-value=5.5e-12 Score=81.61 Aligned_cols=49 Identities=20% Similarity=0.397 Sum_probs=41.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC-CCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR-LTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 110 (112)
+...|+||++.+.. ++.++ |||.||..||.+|+..+ .+||+||.++..+
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence 57889999999864 56677 99999999999999764 5999999988754
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.17 E-value=1.3e-11 Score=84.84 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC-CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~~ 111 (112)
....|+||++.+.. +++++ |||+|++.||.+|+.. +.+||+||.++..+.
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~ 257 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ 257 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence 57889999999964 88888 9999999999999986 455999999987543
No 60
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.17 E-value=3.1e-12 Score=90.51 Aligned_cols=51 Identities=24% Similarity=0.560 Sum_probs=39.3
Q ss_pred CccccccccccccC-CCce---eecCCCcCcccHHhHHHHHhCC-----------CCCccccCCCC
Q 038517 58 LAAICAVCLDGVHK-GERS---RNFSICKHVFHARCIDLWLVRR-----------LTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~-~~~~---~~~~~C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~ 108 (112)
...+|+||++.+.. ++.+ ...+.|+|.||..||.+||++. .+||+||++++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 56789999999876 3322 2233599999999999999742 46999999875
No 61
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1e-11 Score=73.22 Aligned_cols=49 Identities=18% Similarity=0.472 Sum_probs=39.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC------CCCcc--ccCC-CCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR------LTCPT--CRSP-FKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~------~~CP~--Cr~~-~~~ 109 (112)
.+..|+||++.|.. ++.++.|||.|++.||.+|+..+ .+||+ |+.. +..
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 46789999999964 77774499999999999999753 48999 9865 543
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.11 E-value=6.6e-11 Score=64.31 Aligned_cols=48 Identities=21% Similarity=0.625 Sum_probs=37.5
Q ss_pred CccccccccccccCCCceeecCCCc--C---cccHHhHHHHHhC--CCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICK--H---VFHARCIDLWLVR--RLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~--H---~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 109 (112)
++..|.||+++. ++.. .+| |. + .||..||.+|+.. +.+||+|+.++..
T Consensus 5 ~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 567899999973 2333 466 66 4 8999999999974 6789999998865
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4e-11 Score=67.82 Aligned_cols=44 Identities=20% Similarity=0.556 Sum_probs=36.3
Q ss_pred CccccccccccccCCCceeecCCCcCc-ccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHV-FHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
++..|+||++.+.. ++.+| |||. ||..|+.. ...||+||.++..
T Consensus 24 ~~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 35679999998743 66778 9999 99999964 4789999998864
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.06 E-value=9.6e-11 Score=76.49 Aligned_cols=49 Identities=14% Similarity=0.119 Sum_probs=42.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC-CCCccccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR-LTCPTCRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~~ 110 (112)
....|+||++.+.. +++++ |||.|++.||..|+..+ .+||+||.++..+
T Consensus 105 ~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 105 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred HhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 57889999999964 77888 99999999999999863 5799999988754
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=3.6e-10 Score=62.83 Aligned_cols=44 Identities=25% Similarity=0.611 Sum_probs=36.7
Q ss_pred CccccccccccccCCCceeecCCCcCc-ccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHV-FHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
++..|.||++... .++.+| |+|. |+..|+.. ...||+||+++..
T Consensus 14 ~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 14 NSKDCVVCQNGTV---NWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSSCCSSSSSSCC---CCEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCcCcCCC---CEEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 5678999999764 377788 9999 99999974 5789999998753
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.00 E-value=1.4e-10 Score=68.18 Aligned_cols=48 Identities=19% Similarity=0.555 Sum_probs=37.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC--------CCCCcc--ccCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR--------RLTCPT--CRSP 106 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~--------~~~CP~--Cr~~ 106 (112)
...+|+||++++...+.+...+ |||.||..|+.+++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3567999999986544444456 9999999999999863 237999 9987
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.00 E-value=9.7e-11 Score=66.97 Aligned_cols=43 Identities=30% Similarity=0.640 Sum_probs=36.0
Q ss_pred CccccccccccccCCCceeecCCCcCc-ccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHV-FHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
++..|+||++.+. .++.+| |||. |+..|+..| ..||+||.++.
T Consensus 17 ~~~~C~IC~~~~~---~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEI---NSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBC---CEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccC---cEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 3567999999874 377788 9999 999999876 48999999875
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.92 E-value=5e-10 Score=60.99 Aligned_cols=50 Identities=12% Similarity=0.250 Sum_probs=41.9
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
...|+|+++.+.+ ++..+.+||+|.+.||.+|++++.+||+.+.++..+.
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 3579999999864 6666239999999999999998888999999987654
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.86 E-value=7.8e-10 Score=75.81 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=40.5
Q ss_pred CccccccccccccCCCceeec-CCCcCcccHHhHHHHHhCC--CCCcc--ccCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNF-SICKHVFHARCIDLWLVRR--LTCPT--CRSPFKME 110 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~-~~C~H~fh~~Ci~~w~~~~--~~CP~--Cr~~~~~~ 110 (112)
.+..|+||++.|.. +++. . |||.|++.||.+|+..+ .+||+ ||..+..+
T Consensus 180 ~el~CPIcl~~f~D---PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEA---PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSS---EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccC---CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 67899999999954 5554 6 99999999999999764 57999 99877553
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.84 E-value=6.2e-10 Score=79.34 Aligned_cols=44 Identities=27% Similarity=0.572 Sum_probs=37.9
Q ss_pred CccccccccccccCCCceeecCCCcCc-ccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHV-FHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
++..|+||++.+.. ++.+| |||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 56789999998853 77788 9999 999999988 789999998753
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.64 E-value=2.7e-08 Score=58.58 Aligned_cols=45 Identities=31% Similarity=0.651 Sum_probs=36.1
Q ss_pred ccccccccccCCCceeecCCCcCcccHHhHHHHHhC-CCCCccccCCCC
Q 038517 61 ICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-RLTCPTCRSPFK 108 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~ 108 (112)
.|.+|--.+. ...+..| |+|+||.+|+..|.++ .++||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4777776654 3556677 9999999999999864 689999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.52 E-value=1.2e-07 Score=64.45 Aligned_cols=49 Identities=22% Similarity=0.628 Sum_probs=39.8
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC--CCCccccCCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR--LTCPTCRSPFKME 110 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~--~~CP~Cr~~~~~~ 110 (112)
-..|.||.+....|. ..+.|+|.||..|+..|++++ ..||.|+.+++.+
T Consensus 180 i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 568999999886542 223499999999999999864 4899999998765
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.71 E-value=0.0011 Score=38.50 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=37.0
Q ss_pred CccccccccccccCCCceeecCCCc-CcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICK-HVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
.-..|-.|+-... .++ . |+ |.+|..|+...+..+..||+|..+++.
T Consensus 27 G~~nCKsCWf~~k---~LV--~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLV--E-CNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS---SEE--E-CSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhccccC---Cee--e-ecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 6678999997643 233 2 55 999999999999999999999988764
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.50 E-value=0.0027 Score=34.57 Aligned_cols=50 Identities=32% Similarity=0.554 Sum_probs=35.9
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCC----CCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRR----LTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~~~ 111 (112)
.+..|.||.+. ..+..-..|...||..|+...+... =.||.|+......+
T Consensus 11 ~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~P 64 (66)
T 2lri_C 11 PGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPAP 64 (66)
T ss_dssp TTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCCC
T ss_pred CCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCCccCC
Confidence 45679999753 3344444599999999998887643 36999987665544
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.46 E-value=0.0022 Score=37.35 Aligned_cols=35 Identities=11% Similarity=0.413 Sum_probs=25.2
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHH-HH
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDL-WL 94 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~-w~ 94 (112)
+..|.||.+.+.......-+. |+|.|+..|+.. |.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 567999998643322222366 999999999998 53
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.42 E-value=0.004 Score=33.40 Aligned_cols=49 Identities=20% Similarity=0.591 Sum_probs=35.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh-----CCCCCccccCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-----RRLTCPTCRSP 106 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-----~~~~CP~Cr~~ 106 (112)
++..|+||...+..+...+.-..|...||..|+.--.. ....||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 46679999998865555555555999999999754221 34579999754
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=95.01 E-value=0.011 Score=38.40 Aligned_cols=49 Identities=20% Similarity=0.500 Sum_probs=35.3
Q ss_pred ccccccccccccCCCc---eeecCCCcCcccHHhHHH------HHh-----CCCCCccccCCC
Q 038517 59 AAICAVCLDGVHKGER---SRNFSICKHVFHARCIDL------WLV-----RRLTCPTCRSPF 107 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~---~~~~~~C~H~fh~~Ci~~------w~~-----~~~~CP~Cr~~~ 107 (112)
+..|+||...|..++. .+.-..|...||..|+.- -+. ....||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 4569999999987663 555556999999999632 111 157899998753
No 78
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.20 E-value=0.043 Score=29.13 Aligned_cols=46 Identities=24% Similarity=0.665 Sum_probs=32.5
Q ss_pred CCccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCC
Q 038517 57 NLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSP 106 (112)
Q Consensus 57 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 106 (112)
..+..|.+|.+. ..+..-..|...||..|+..-+.+ .-.||.|+..
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 357789999873 345455559999999999875432 2369999763
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=94.02 E-value=0.057 Score=43.16 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=43.0
Q ss_pred CccccccccccccCCCceeecCCCc-CcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICK-HVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~-H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
++..|||-++.+.. ++.+| -| +.|-+..|.+|+.++.+||.=|.++..+.
T Consensus 890 ~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~ 940 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED 940 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred HHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence 57889999998865 88888 76 68999999999999999999999887543
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=93.74 E-value=0.08 Score=30.05 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=22.7
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLW 93 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 93 (112)
.++.|.||--- ..++...--- |+-+||..|+.+.
T Consensus 14 ~D~~C~VC~~~-t~~~l~pCRv-C~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVW-TAESLFPCRV-CTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCC-CSSCCSSCSS-SSSCCCHHHHHHH
T ss_pred CCcccCccccc-cccceecccc-ccccccHhhcccc
Confidence 57889999732 2222222222 9999999999996
No 81
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=93.30 E-value=0.09 Score=28.30 Aligned_cols=34 Identities=21% Similarity=0.507 Sum_probs=26.0
Q ss_pred CccccccccccccCCCceeecC-CCcCcccHHhHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFS-ICKHVFHARCID 91 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~ 91 (112)
....|++|...+..++..+.-. .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 4567999999987766666655 699999999964
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.82 E-value=0.042 Score=30.23 Aligned_cols=50 Identities=22% Similarity=0.494 Sum_probs=34.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 108 (112)
+...|.||..... ++..+.-..|.-.||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4567999988753 4445555559999999998754432 346999987554
No 83
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.70 E-value=0.07 Score=27.03 Aligned_cols=44 Identities=25% Similarity=0.600 Sum_probs=29.1
Q ss_pred ccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccC
Q 038517 61 ICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRS 105 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 105 (112)
.|.||...-.. +.+..-..|...||..|+.+=+.+ .-.||.|+.
T Consensus 2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888875433 334444459999999999753432 235999975
No 84
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=91.85 E-value=0.16 Score=28.20 Aligned_cols=48 Identities=21% Similarity=0.584 Sum_probs=32.3
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHh-----CCCCCccccCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-----RRLTCPTCRSPF 107 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-----~~~~CP~Cr~~~ 107 (112)
...| ||...+..+...+.-..|...||..|+.--.. ....||.|+..-
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4456 89888754455555555999999999852111 345799998754
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=91.81 E-value=0.057 Score=27.63 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=29.7
Q ss_pred ccccccccccCCCceeecC-CCcCcccHHhHHHHH----hCCCCCcccc
Q 038517 61 ICAVCLDGVHKGERSRNFS-ICKHVFHARCIDLWL----VRRLTCPTCR 104 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~~w~----~~~~~CP~Cr 104 (112)
.|.+|...+..+...+.-. .|.-.||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778988886555555544 588899999964211 2466799885
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=90.41 E-value=0.091 Score=33.81 Aligned_cols=46 Identities=35% Similarity=0.608 Sum_probs=32.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 107 (112)
++..|.+|.+. |+ +..-..|.-.||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46779999853 34 4444459999999998776543 23599998754
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=90.07 E-value=0.084 Score=27.94 Aligned_cols=46 Identities=30% Similarity=0.723 Sum_probs=31.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 107 (112)
.+..|.+|.+. + .+..-..|...||..|+..-+.. .-.||.|+...
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 56779999863 2 34444449999999999864432 23599998653
No 88
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=89.78 E-value=0.052 Score=31.02 Aligned_cols=52 Identities=19% Similarity=0.508 Sum_probs=33.7
Q ss_pred Cccccccccccc-cCCCceeecCCCcCcccHHhHHHHHh--CCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGV-HKGERSRNFSICKHVFHARCIDLWLV--RRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~-~~~~~~~~~~~C~H~fh~~Ci~~w~~--~~~~CP~Cr~~~~~ 109 (112)
++..|.||...- ..++.+..-..|.-.||..|+..-.. ..-.||.|......
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 567899999753 22234555555989999999974321 12359998765433
No 89
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.21 E-value=0.26 Score=28.94 Aligned_cols=49 Identities=18% Similarity=0.407 Sum_probs=33.4
Q ss_pred ccccccccccccCCCceeecC-CCcCcccHHhHHHHH----------hCCCCCccccCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFS-ICKHVFHARCIDLWL----------VRRLTCPTCRSPF 107 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~-~C~H~fh~~Ci~~w~----------~~~~~CP~Cr~~~ 107 (112)
...|+||...+..+...+.-. .|.-.||..|+.--. .....||.|+..-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 356999999986655555543 589999999974211 0245699998643
No 90
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.94 E-value=0.069 Score=29.75 Aligned_cols=47 Identities=21% Similarity=0.505 Sum_probs=30.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC-----CCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-----RLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~ 105 (112)
.+..|.||...-.. ..+..-..|...||..|+.+=+.. .=.||.|+.
T Consensus 25 ~~c~C~vC~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 25 HSCSCRVCGGKHEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSSSCSSSCCCCCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCCCcCcCCcCCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 34478899864322 345455559999999999854432 225888865
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=88.92 E-value=0.11 Score=34.15 Aligned_cols=46 Identities=33% Similarity=0.564 Sum_probs=32.7
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 107 (112)
.+..|.+|... | .+.....|...||..|+.+-+.. .-.||.|+..-
T Consensus 6 ~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 56779999853 2 35455559999999999776543 23699998743
No 92
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.67 E-value=0.63 Score=26.13 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=28.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR 96 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~ 96 (112)
....|.+|.+.++....+-.-..=+|.||..|-+..+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 356799999999876655422224599999999988864
No 93
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.50 E-value=1.6 Score=24.90 Aligned_cols=51 Identities=20% Similarity=0.480 Sum_probs=34.8
Q ss_pred Ccccccccccccc---CCCceeecCCCcCcccHHhHHHHHh-CCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVH---KGERSRNFSICKHVFHARCIDLWLV-RRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~---~~~~~~~~~~C~H~fh~~Ci~~w~~-~~~~CP~Cr~~~~ 108 (112)
....|.||=++.- .|+.-+-...|+--.|+.|+.-=.+ .++.||.|++.+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4678999998854 2222222233777789999765443 4789999999875
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=88.41 E-value=0.15 Score=30.31 Aligned_cols=47 Identities=28% Similarity=0.566 Sum_probs=30.9
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRS 105 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 105 (112)
-..|.||.+.-..++.+..-..|...||..|+.+-+.. .=.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34688888643233344444559999999999765543 236999974
No 95
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=88.24 E-value=0.3 Score=27.91 Aligned_cols=48 Identities=27% Similarity=0.512 Sum_probs=33.4
Q ss_pred CCCccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCCC
Q 038517 56 RNLAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSPF 107 (112)
Q Consensus 56 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 107 (112)
...+..|.+|.+. ++ +..-..|.-.||..|+.+=+.. .-.||.|+..-
T Consensus 22 d~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 3367889999964 33 4444458899999999775543 23599998643
No 96
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.91 E-value=0.14 Score=30.21 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=25.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV 95 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~ 95 (112)
++..|.||.+.-+..+ +..-..|+..||..|+...+.
T Consensus 6 ~~~~C~~C~~~g~~~~-ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLD-QFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCCCTTT-SEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCCCCcC-CeECCCCCCCcChHHhCCccc
Confidence 5778999987632212 233344999999999987664
No 97
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=87.51 E-value=0.14 Score=32.51 Aligned_cols=47 Identities=21% Similarity=0.645 Sum_probs=32.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHH-----hCCCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWL-----VRRLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~-----~~~~~CP~Cr~ 105 (112)
....| +|......+...+.-..|...||..|+.--. ...-.||.|+.
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 45678 9998765445555555599999999984211 12457999975
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.42 E-value=0.97 Score=28.06 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=32.1
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh-----------CCCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-----------RRLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-----------~~~~CP~Cr~ 105 (112)
.+..|.+|-+. | .+..-..|...||..||.+-+. ..=.||.|+.
T Consensus 62 ~~d~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 67889999974 2 3444445999999999997652 1236999974
No 99
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=87.30 E-value=0.076 Score=28.99 Aligned_cols=45 Identities=27% Similarity=0.610 Sum_probs=28.3
Q ss_pred ccccccccccCCCceeecCCCcCcccHHhHHHHHhC-----CCCCccccCC
Q 038517 61 ICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-----RLTCPTCRSP 106 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~ 106 (112)
.|.||...-. +..+..-..|...||..|+.+=+.+ .=.||.|+.+
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 5667775422 2344444458899999999854432 2259998753
No 100
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.20 E-value=0.057 Score=28.06 Aligned_cols=44 Identities=30% Similarity=0.713 Sum_probs=30.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 105 (112)
.+..|.+|.+. + .+..-..|...||..|+.+-+.. .-.||.|+.
T Consensus 8 ~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 56789999874 2 34444459999999999864432 225888864
No 101
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=87.04 E-value=0.55 Score=33.58 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=32.9
Q ss_pred CccccccccccccCCCceeecCCCcCc--ccHHhHHHHHhC--CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHV--FHARCIDLWLVR--RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~--fh~~Ci~~w~~~--~~~CP~Cr~~~~~~~ 111 (112)
....|+|-...+.. +.....|.|. |-..-+.....+ .-.||+|.+.+..+.
T Consensus 214 vSL~CPlS~~ri~~---P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 214 VSLMCPLGKMRLTI---PCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp EESBCTTTCSBCSS---EEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred EeeeCCCccceecc---CCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 35578887776642 4444349998 665554444433 347999999887654
No 102
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=86.68 E-value=0.59 Score=33.55 Aligned_cols=51 Identities=22% Similarity=0.518 Sum_probs=32.3
Q ss_pred CccccccccccccCCCceeecCCCcCc--ccHHhHHHHHhC--CCCCccccCCCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHV--FHARCIDLWLVR--RLTCPTCRSPFKMEP 111 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~--fh~~Ci~~w~~~--~~~CP~Cr~~~~~~~ 111 (112)
....|+|-...+.. -++... |.|. |-..-+.....+ .-.||+|.+.+..+.
T Consensus 248 vSL~CPlS~~ri~~--PvRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~d 302 (371)
T 3i2d_A 248 MSLQCPISYTRMKY--PSKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALEN 302 (371)
T ss_dssp EESBCTTTSSBCSS--EEEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGG
T ss_pred EeecCCCccccccc--cCcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHH
Confidence 35678887777642 334444 9998 555444444333 357999999886654
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.89 E-value=1.7 Score=25.52 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=22.4
Q ss_pred cccccccccccc-----CCCceeecCCCcCcccHHhHH
Q 038517 59 AAICAVCLDGVH-----KGERSRNFSICKHVFHARCID 91 (112)
Q Consensus 59 ~~~C~IC~~~~~-----~~~~~~~~~~C~H~fh~~Ci~ 91 (112)
...|.+|+..-. .++.+..-..|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 456999987521 223444444599999999995
No 104
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=85.86 E-value=0.12 Score=27.08 Aligned_cols=45 Identities=29% Similarity=0.696 Sum_probs=30.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSP 106 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 106 (112)
.+..|.+|... + .+..-..|.-.||..|+.+=+.. .-.||.|+..
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46779999874 2 34444459999999999864432 2358888653
No 105
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.75 E-value=0.45 Score=26.05 Aligned_cols=47 Identities=21% Similarity=0.480 Sum_probs=31.3
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHH---------hCCCCCccccCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWL---------VRRLTCPTCRSPF 107 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~---------~~~~~CP~Cr~~~ 107 (112)
...| ||..... +...+.-..|...||..|+.--. .....||.|+..-
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4557 8988764 33444544599999999984211 2467899998643
No 106
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=85.43 E-value=0.13 Score=27.63 Aligned_cols=45 Identities=31% Similarity=0.612 Sum_probs=31.1
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSP 106 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 106 (112)
.+..|.||.+. + .+..-..|...||..|+.+-+.. .-.||.|...
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 57789999864 2 34444459999999999854432 2359999753
No 107
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=84.38 E-value=0.23 Score=29.27 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=18.0
Q ss_pred CcCcccHHhHHHHHhCCCCCccccCCCCCCC
Q 038517 81 CKHVFHARCIDLWLVRRLTCPTCRSPFKMEP 111 (112)
Q Consensus 81 C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~~ 111 (112)
||+.|. .-+.+...||.|+++...+|
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCCCBCCC
T ss_pred CcCeec-----ccCCCCCCCcCCCCCccCCc
Confidence 999981 11234578999999776554
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=83.69 E-value=2.2 Score=26.01 Aligned_cols=44 Identities=23% Similarity=0.554 Sum_probs=30.7
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHH------h-----CCCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWL------V-----RRLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~------~-----~~~~CP~Cr~ 105 (112)
.+..|.+|-+. ..+..-..|-..||..||.+-+ + ..=.|+.|+-
T Consensus 56 ~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 67789999964 2344444589999999999752 1 1236999964
No 109
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=82.96 E-value=0.25 Score=26.70 Aligned_cols=46 Identities=20% Similarity=0.517 Sum_probs=30.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh---CCCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV---RRLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~---~~~~CP~Cr~ 105 (112)
+...| ||-.... +...+.-..|...||..|+.---. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45567 9987664 444555555999999999853221 2456998864
No 110
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=82.71 E-value=0.65 Score=24.56 Aligned_cols=51 Identities=14% Similarity=0.385 Sum_probs=34.4
Q ss_pred Ccccccccccccc-CCCceeecCCCcCcccHHhHHHHHh-------CCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVH-KGERSRNFSICKHVFHARCIDLWLV-------RRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~-~~~~~~~~~~C~H~fh~~Ci~~w~~-------~~~~CP~Cr~~~~ 108 (112)
++..|.||..... .+..+..-..|.-.||..|+..=+. ..-.||.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 5678999997643 2344555556999999999875331 2346999876544
No 111
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.57 E-value=0.68 Score=24.55 Aligned_cols=40 Identities=25% Similarity=0.623 Sum_probs=21.6
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
..|+-|-+.+..++.+.. . -+..||..|+. |-.|++++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF~--------C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE-Y-GGQTWHEHCFL--------CSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC-S-TTCCEETTTCB--------CTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE-E-CccccCcccCe--------ECCCCCcCCC
Confidence 456777766654322221 1 45667766643 6666665543
No 112
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=82.33 E-value=1 Score=25.08 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=24.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 92 (112)
+...|.+|...|..-..--.--.||.+|+..|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 45679999999864332222334999999999754
No 113
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=82.29 E-value=0.28 Score=32.87 Aligned_cols=47 Identities=26% Similarity=0.595 Sum_probs=26.9
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhC-----CCCCccccCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR-----RLTCPTCRSP 106 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~~ 106 (112)
+..|.+|...-.. ..+.....|...||..|+.+=+.. .=.||.|+..
T Consensus 174 ~c~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 174 VCACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TTSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 3468888764322 334444459999999999854432 2259999753
No 114
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=82.01 E-value=0.57 Score=27.30 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=10.7
Q ss_pred cccHHhHHHHHh
Q 038517 84 VFHARCIDLWLV 95 (112)
Q Consensus 84 ~fh~~Ci~~w~~ 95 (112)
-||+.|+..|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 115
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=81.96 E-value=0.58 Score=27.24 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=10.8
Q ss_pred cccHHhHHHHHh
Q 038517 84 VFHARCIDLWLV 95 (112)
Q Consensus 84 ~fh~~Ci~~w~~ 95 (112)
-||+.|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999995
No 116
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.87 E-value=1.6 Score=24.94 Aligned_cols=46 Identities=24% Similarity=0.573 Sum_probs=29.5
Q ss_pred CccccccccccccCCCceeecCC--Cc-CcccHHhHHHHHhC----CCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSI--CK-HVFHARCIDLWLVR----RLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 108 (112)
+...| ||..... + ..+.-.. |. ..||..|+. +.. .-.||.|+..-.
T Consensus 35 e~~yC-iC~~~~~-g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 35 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CCBCS-TTCCBCC-S-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCcEE-ECCCCCC-C-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 55667 9988642 3 3443334 54 579999987 332 346999987543
No 117
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=81.58 E-value=1.8 Score=23.45 Aligned_cols=46 Identities=24% Similarity=0.573 Sum_probs=29.6
Q ss_pred CccccccccccccCCCceeecCC--Cc-CcccHHhHHHHHhC----CCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSI--CK-HVFHARCIDLWLVR----RLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~~~~ 108 (112)
+...| ||..... + ..+.-.. |. ..||..|+. +.. .-.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~-g-~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSC-S-SEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCC-C-CEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 45667 8987642 3 3444444 55 689999997 432 346999987543
No 118
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.07 E-value=1.1 Score=24.59 Aligned_cols=41 Identities=29% Similarity=0.587 Sum_probs=27.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
....|+.|-+.+..++.+. . -+..||..|+. |-.|++.+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~CF~--------C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V-NGHFFHRSCFR--------CHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B-TTBCCBTTTCB--------CSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEE--E-CCCeeCCCcCE--------EcCCCCCcCC
Confidence 4567999998876555443 2 56778888864 7777766543
No 119
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=80.89 E-value=2 Score=23.26 Aligned_cols=48 Identities=21% Similarity=0.585 Sum_probs=32.1
Q ss_pred Cccccccccccc-cCCCceeecCCCcCcccHHhHHHHHh--CCCCCccccC
Q 038517 58 LAAICAVCLDGV-HKGERSRNFSICKHVFHARCIDLWLV--RRLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~-~~~~~~~~~~~C~H~fh~~Ci~~w~~--~~~~CP~Cr~ 105 (112)
.+..|.||.+.- ..++.+..-..|.-.||..|+..-.. ..=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 678899998753 23345555556999999999874221 1235888864
No 120
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=80.80 E-value=0.91 Score=24.02 Aligned_cols=39 Identities=23% Similarity=0.646 Sum_probs=20.9
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
..|+.|-+.+..++.+... -+..||..|+. |-.|++++.
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~ 44 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCFI--------CHRCQQPIG 44 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTTC--------CSSSCCCCC
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCCc--------ccccCCccC
Confidence 3566676666543333222 34566666643 666666554
No 121
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.14 E-value=0.12 Score=29.64 Aligned_cols=47 Identities=26% Similarity=0.471 Sum_probs=31.4
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~ 105 (112)
+...|.||...-.. +.+..-..|...||..|+.+=+.. .=.||.|+.
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 56679999976432 334444459999999999743332 224999865
No 122
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=80.06 E-value=0.23 Score=27.62 Aligned_cols=44 Identities=27% Similarity=0.631 Sum_probs=28.0
Q ss_pred ccccccccccCCCceeecCCCcCcccHHhHHHHHhC----C-CCCccccC
Q 038517 61 ICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----R-LTCPTCRS 105 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~-~~CP~Cr~ 105 (112)
.|.+|...-.. +.+..-..|...||..|+.+-+.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 56777665322 334444458899999999865543 1 35999875
No 123
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=79.86 E-value=0.62 Score=30.15 Aligned_cols=45 Identities=29% Similarity=0.547 Sum_probs=30.5
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhC----CCCCccccCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR----RLTCPTCRSPF 107 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 107 (112)
+..|.+|.+. |+ +.....|...||..|+.+=+.. .-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 5679999854 33 3333448899999999764432 23599998653
No 124
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=79.53 E-value=1.5 Score=24.89 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=24.9
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLW 93 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 93 (112)
....|.+|...|..-..--.-..||++|+..|...+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 456799999988643322223349999999997654
No 125
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=79.48 E-value=1.4 Score=26.62 Aligned_cols=35 Identities=23% Similarity=0.463 Sum_probs=24.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 92 (112)
....|.+|...|..-..--.--.||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 45679999999864332222334999999999654
No 126
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.33 E-value=1.3 Score=24.12 Aligned_cols=41 Identities=20% Similarity=0.674 Sum_probs=24.6
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
...|+.|-+.+..++.++.. -+..||..|+. |-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCFT--------CSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTCC--------CSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccCc--------hhhCCCccCC
Confidence 34677777776554443222 45677777753 7777766643
No 127
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=79.14 E-value=1.6 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=22.7
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHH
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 92 (112)
..|.+|...|..-..--.--.||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 479999998864332222234999999999643
No 128
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.67 E-value=1.2 Score=23.57 Aligned_cols=40 Identities=20% Similarity=0.511 Sum_probs=22.7
Q ss_pred cccccccccccC--CCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 60 AICAVCLDGVHK--GERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 60 ~~C~IC~~~~~~--~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
..|+-|-+.+.. ++.++. . -+..||..|+. |-.|+.++..
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~CF~--------C~~C~~~L~~ 47 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS-F-EERQWHNDCFN--------CKKCSLSLVG 47 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE-C-SSCEECTTTCB--------CSSSCCBCTT
T ss_pred CCCcCCCccccCCCCcceEE-E-CCcccCcccCE--------eccCCCcCCC
Confidence 457777776653 222222 2 46677777753 7777766643
No 129
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.65 E-value=1.2 Score=23.52 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=6.5
Q ss_pred cCcccHHhHHHHHh
Q 038517 82 KHVFHARCIDLWLV 95 (112)
Q Consensus 82 ~H~fh~~Ci~~w~~ 95 (112)
+..||..|..+.+.
T Consensus 53 ~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 53 RRAYCEGCYVATLE 66 (72)
T ss_dssp SCEEEHHHHHHHHH
T ss_pred CeEECHHHHHHHHc
Confidence 34455555444443
No 130
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=77.66 E-value=0.8 Score=23.92 Aligned_cols=43 Identities=28% Similarity=0.664 Sum_probs=27.6
Q ss_pred CccccccccccccCCCceeecCC--Cc-CcccHHhHHHHHhC----CCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSI--CK-HVFHARCIDLWLVR----RLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~ 105 (112)
+...| ||.... .+ ..+.-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 45556 898764 23 3444444 55 689999987 332 346999865
No 131
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.60 E-value=0.98 Score=24.27 Aligned_cols=40 Identities=25% Similarity=0.517 Sum_probs=25.9
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
...|+.|-+.+..++.+. . -+..||..|+. |..|++++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF~--------C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS--S-LGKDWHKFCLK--------CERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE--E-TTEEEETTTCB--------CSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEE--E-CCeEeeCCCCC--------CCCCCCccCC
Confidence 456888888776555433 2 46678877753 7777777654
No 132
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.47 E-value=0.47 Score=27.44 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=28.8
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhC---CCCCccccC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVR---RLTCPTCRS 105 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~---~~~CP~Cr~ 105 (112)
..| ||-.....+ ..+.-..|.-.||..|+..=... .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 346 787665443 44444559999999998653221 346999974
No 133
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.43 E-value=1.4 Score=23.68 Aligned_cols=41 Identities=17% Similarity=0.478 Sum_probs=24.5
Q ss_pred ccccccccccccC--CCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 59 AAICAVCLDGVHK--GERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 59 ~~~C~IC~~~~~~--~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
...|+.|-+.+.. +...+. . -+..||..|+. |-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~-a-~~~~wH~~CF~--------C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC-F-QDSQWHSECFN--------CGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE-E-TTEEEEGGGCB--------CTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEE-E-CCcccCcccCC--------hhhCCCcCCC
Confidence 3458888877653 222322 2 56678888753 7777766643
No 134
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=77.30 E-value=1.8 Score=24.09 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=25.2
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLW 93 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 93 (112)
+...|.+|...|..-..--.--.||.+|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 466799999998653322222349999999997553
No 135
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=77.12 E-value=0.73 Score=25.40 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=30.2
Q ss_pred CccccccccccccCCCceeecC--CCcCcccHHhHHHHHh---------CCCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFS--ICKHVFHARCIDLWLV---------RRLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~w~~---------~~~~CP~Cr~~~ 107 (112)
....| ||-.....+ ..+.-. .|...||..|+.---. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 34567 788764333 344433 5999999999853111 245799998644
No 136
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=76.99 E-value=1.8 Score=24.41 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=23.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 92 (112)
+...|.+|...|..-..--.--.||.+|+..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 45579999998864332222234999999998654
No 137
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=75.87 E-value=0.31 Score=29.41 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=27.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCcccc
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCR 104 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr 104 (112)
....|..|-..|..-..--.-..||.+||..|..........|-.|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 34579999998864322222334999999999665444445565553
No 138
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=75.76 E-value=1.5 Score=28.89 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=24.6
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 92 (112)
++..|.+|...|..-..--....||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 45789999999864332222334999999999654
No 139
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.21 E-value=0.97 Score=24.25 Aligned_cols=40 Identities=28% Similarity=0.660 Sum_probs=24.7
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
...|+-|-+.+..++.+... -+..||..|+. |-.|++++.
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~ 50 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCFV--------CAQCFQQFP 50 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEE--TTEEECTTTCC--------CTTTCCCCG
T ss_pred CCCchhcCCccCCCceEEEe--CccEeccccCe--------ECCCCCCCC
Confidence 45688888877544443322 45677877753 777776654
No 140
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=75.20 E-value=2.7 Score=24.75 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=22.4
Q ss_pred cccccccccccC------CCceeecCCCcCcccHHhHHHH
Q 038517 60 AICAVCLDGVHK------GERSRNFSICKHVFHARCIDLW 93 (112)
Q Consensus 60 ~~C~IC~~~~~~------~~~~~~~~~C~H~fh~~Ci~~w 93 (112)
..|.+|+..-.. +..++.-..|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 458999875421 1234444449999999998754
No 141
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=74.86 E-value=0.81 Score=24.62 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=24.3
Q ss_pred CccccccccccccCCCceeecCCCcCcccH-HhHHHHHhCCCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHA-RCIDLWLVRRLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~-~Ci~~w~~~~~~CP~Cr~~~ 107 (112)
.-..|..|-..+..+. ... . =+..|+. .|..+.+ ...|..|...+
T Consensus 26 ~CF~C~~C~~~L~~~~-~~~-~-~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-HAE-H-EGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT-EEE-E-TTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc-eEC-c-CCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 3466777777765442 211 1 3556776 4765533 34566665443
No 142
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=74.66 E-value=1.6 Score=28.89 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=25.2
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLW 93 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w 93 (112)
.+..|.+|...|..-..--....||.+||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999988644332233349999999996543
No 143
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=74.63 E-value=3.5 Score=24.21 Aligned_cols=44 Identities=23% Similarity=0.505 Sum_probs=28.7
Q ss_pred CccccccccccccCCCceeecC--CCcCcccHHhHHHHHhC----CCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFS--ICKHVFHARCIDLWLVR----RLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~ 107 (112)
.+..|.+|.+ .| .+..-. .|...||..|+. +.. .-.||.|+-.+
T Consensus 14 ~~~~C~~C~~---~G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 14 HEDYCFQCGD---GG-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp SCSSCTTTCC---CS-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCcCCC---CC-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 6778999984 23 343333 388999999997 443 22588776544
No 144
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.18 E-value=2 Score=22.51 Aligned_cols=43 Identities=21% Similarity=0.531 Sum_probs=28.3
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccc
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTC 103 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~C 103 (112)
..|--|...+.. .....-+.|++.|+.+|=.---..-..||.|
T Consensus 16 ~~C~~C~~~~~~-~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKD-QHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTT-SEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCC-CccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 358888888843 2224456699999999943211334579987
No 145
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=73.24 E-value=2.2 Score=26.14 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=23.2
Q ss_pred Ccccccccccccc-CCC-ceeecCCCcCcccHHhHH
Q 038517 58 LAAICAVCLDGVH-KGE-RSRNFSICKHVFHARCID 91 (112)
Q Consensus 58 ~~~~C~IC~~~~~-~~~-~~~~~~~C~H~fh~~Ci~ 91 (112)
.+..|.+|...|. .+. ...-.. |+|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~-C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCED-CKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTT-TCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCC-CCcccccccCC
Confidence 5778999999983 222 333344 99999998854
No 146
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.27 E-value=2.5 Score=23.48 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=23.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHH
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDL 92 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~ 92 (112)
....|.+|...|..-..--.--.||.+|+..|...
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 45679999998864322222233999999999643
No 147
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=71.87 E-value=1.6 Score=22.87 Aligned_cols=42 Identities=26% Similarity=0.604 Sum_probs=27.9
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
....|+-|-..+..++.+... =+..||..|+. |-.|.+++..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF~--------C~~C~~~L~~ 51 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQCFV--------CAQCFQQFPE 51 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEE--TTEEEETTTSS--------CTTTCCCCGG
T ss_pred CCccchhcCccccCCceEEEe--CcCeeCcCCCc--------ccCCCCCCCC
Confidence 355688898887655544332 56678888863 7788777643
No 148
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.13 E-value=2.3 Score=23.09 Aligned_cols=41 Identities=24% Similarity=0.549 Sum_probs=24.4
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
...|+.|-..+..++.+... =+..||..|+. |-.|++++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF~--------C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCFR--------CCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTSB--------CTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCCe--------ecCCCCccCC
Confidence 34577887776532333221 45678877753 7777776654
No 149
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=70.27 E-value=1.5 Score=22.92 Aligned_cols=43 Identities=26% Similarity=0.647 Sum_probs=26.8
Q ss_pred CccccccccccccCCCceeecCC--Cc-CcccHHhHHHHHhC----CCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSI--CK-HVFHARCIDLWLVR----RLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~ 105 (112)
+...| ||..... + ..+.-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 8987642 2 3444444 44 579999997 432 346998864
No 150
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=70.13 E-value=2 Score=23.09 Aligned_cols=30 Identities=23% Similarity=0.563 Sum_probs=23.4
Q ss_pred cccccccccccCCCceeecCCC-cCcccHHhHHHHH
Q 038517 60 AICAVCLDGVHKGERSRNFSIC-KHVFHARCIDLWL 94 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C-~H~fh~~Ci~~w~ 94 (112)
.-|.||.++ ..++-+. | +-.||..|..+.=
T Consensus 9 pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 9 PWCCICNED----ATLRCAG-CDGDLYCARCFREGH 39 (67)
T ss_dssp SSCTTTCSC----CCEEETT-TTSEEECSSHHHHHT
T ss_pred CeeEEeCCC----CeEEecC-CCCceehHHHHHHHc
Confidence 449999987 3477777 8 7899999987753
No 151
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=68.48 E-value=5.8 Score=25.03 Aligned_cols=35 Identities=23% Similarity=0.572 Sum_probs=25.8
Q ss_pred CccccccccccccCCCceeecC--CCcCcccHHhHHHHHhC
Q 038517 58 LAAICAVCLDGVHKGERSRNFS--ICKHVFHARCIDLWLVR 96 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~w~~~ 96 (112)
.+..|.||-+. ..+..-. .|...|+..||+.++..
T Consensus 78 ~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 78 YQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 66789998863 3444433 48899999999998853
No 152
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=68.31 E-value=2.1 Score=23.34 Aligned_cols=40 Identities=23% Similarity=0.573 Sum_probs=27.2
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
....|+-|-+.+..++.+.. -+..||..|+. |-.|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF~--------C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSCFK--------CQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTTCB--------CSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCcccccccCC--------cCcCCCCcC
Confidence 34568889888765555443 45678887753 888877764
No 153
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=67.59 E-value=2.8 Score=23.62 Aligned_cols=48 Identities=19% Similarity=0.496 Sum_probs=32.7
Q ss_pred CccccccccccccC-CCceeecCCCcCcccHHhHHHHHh--------CCCCCccccC
Q 038517 58 LAAICAVCLDGVHK-GERSRNFSICKHVFHARCIDLWLV--------RRLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~w~~--------~~~~CP~Cr~ 105 (112)
.+..|.+|...-.. ++.+..-..|...||..|+.+-+. ..=.|+.|+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 45679999976332 244555556999999999986443 1235888865
No 154
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=66.29 E-value=1.4 Score=20.51 Aligned_cols=14 Identities=21% Similarity=0.605 Sum_probs=10.5
Q ss_pred CccccccccccccC
Q 038517 58 LAAICAVCLDGVHK 71 (112)
Q Consensus 58 ~~~~C~IC~~~~~~ 71 (112)
++..||||+..+..
T Consensus 4 EGFiCP~C~~~l~s 17 (34)
T 3mjh_B 4 EGFICPQCMKSLGS 17 (34)
T ss_dssp EEEECTTTCCEESS
T ss_pred cccCCcHHHHHcCC
Confidence 35789999988754
No 155
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=66.11 E-value=2.9 Score=22.32 Aligned_cols=42 Identities=21% Similarity=0.486 Sum_probs=26.6
Q ss_pred ccccccccccccC---CCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCCC
Q 038517 59 AAICAVCLDGVHK---GERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 59 ~~~C~IC~~~~~~---~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
...|+-|-+.+.. +...+. . =+..||..|+. |-.|++++...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~-a-~~~~~H~~CF~--------C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVA-Y-EGQSWHDYCFH--------CKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEE-E-TTEEEETTTCB--------CSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeEE-E-CcceeCcccCE--------ehhcCCCCCCC
Confidence 4568888887763 223222 2 46678888753 88888877543
No 156
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=65.91 E-value=0.28 Score=25.84 Aligned_cols=47 Identities=28% Similarity=0.505 Sum_probs=28.3
Q ss_pred Cccccccccc-cccCCCceeecCCCcCcccHHhHHHHHhCCC----CCccccC
Q 038517 58 LAAICAVCLD-GVHKGERSRNFSICKHVFHARCIDLWLVRRL----TCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~-~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~----~CP~Cr~ 105 (112)
+...|.||+. .|.+|.--.-.. |.-.|+..|--.|-.+++ .|-+||+
T Consensus 8 d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 8 DAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CcchhhhhccceeccCCCccccc-cCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 5778999997 555544444344 667777777655543322 2666654
No 157
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.83 E-value=2.4 Score=22.78 Aligned_cols=48 Identities=25% Similarity=0.417 Sum_probs=32.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHH----hCCCCCccccCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWL----VRRLTCPTCRSP 106 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~----~~~~~CP~Cr~~ 106 (112)
....| ||-.....+...+.-..|...||..|+.--- .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7988765555555555699999999975321 124569999764
No 158
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=65.11 E-value=1.3 Score=24.15 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=13.0
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhH
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCI 90 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci 90 (112)
..|+.|-+.+..++.+. . -+..||..|+
T Consensus 8 ~~C~~C~~~I~~~~~~~--a-~~~~~H~~CF 35 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQ--C-DGRSFHRCCF 35 (81)
T ss_dssp CBCSSSCCBCSSTTEEE--E-TTEEEESSSE
T ss_pred CcCcCcCccccCceeEE--e-CCcccccccC
Confidence 34666665554333221 1 3445555554
No 159
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=64.78 E-value=2.1 Score=25.36 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=16.9
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHH
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWL 94 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~ 94 (112)
-..|..|-..+..++..... =+..||..|..+.+
T Consensus 36 CF~C~~C~~~L~~g~~f~~~--~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLLI--NSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEEC--SSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEEee--CCEEEcHHHhHHHh
Confidence 45566666555433332222 34556666655554
No 160
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=64.55 E-value=3.7 Score=23.07 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=27.9
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
.-..|..|...+.. ...... =+..|+..|..+ .-...|..|..++.
T Consensus 32 ~CF~C~~C~~~L~~-~~~~~~--~g~~yC~~cy~~--~~~~~C~~C~~~I~ 77 (101)
T 2cup_A 32 TCFRCAKCLHPLAN-ETFVAK--DNKILCNKCTTR--EDSPKCKGCFKAIV 77 (101)
T ss_dssp TTCCCSSSCCCTTS-SCCEEE--TTEEECHHHHTT--CCCCBCSSSCCBCC
T ss_pred cCCcccccCCCCCc-CeeECc--CCEEEChhHhhh--hcCCccccCCCccc
Confidence 34677788777743 222211 456677777533 12567999988886
No 161
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=64.53 E-value=3.2 Score=21.42 Aligned_cols=39 Identities=23% Similarity=0.557 Sum_probs=23.7
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
...|+.|-+.+. ++. +.. -+..||..|+. |..|+.++..
T Consensus 5 ~~~C~~C~~~I~-~~~--~~a-~~~~~H~~CF~--------C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRV--VNA-MGKQWHVEHFV--------CAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCE--ECC-TTSBEETTTCB--------CTTTCCBCSS
T ss_pred CCCCcccCCEec-ceE--EEE-CccccccCcCE--------ECCCCCCCCC
Confidence 345777777765 332 222 56678877753 7777776654
No 162
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.93 E-value=3.6 Score=22.82 Aligned_cols=28 Identities=32% Similarity=0.638 Sum_probs=12.6
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhH
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCI 90 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci 90 (112)
..|+-|-+.+...+.+ .. -+..||..|+
T Consensus 16 ~~C~~C~~~I~~~~~v--~a-~~~~~H~~CF 43 (91)
T 2d8y_A 16 ETCVECQKTVYPMERL--LA-NQQVFHISCF 43 (91)
T ss_dssp CBCTTTCCBCCTTSEE--EC-SSSEEETTTC
T ss_pred CcCccCCCccCCceeE--EE-CCCEECCCCC
Confidence 3455555555433322 11 3445555553
No 163
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.58 E-value=6.1 Score=21.73 Aligned_cols=40 Identities=20% Similarity=0.454 Sum_probs=27.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
....|.-|-+.+.. +.+ .. -+..||..|+. |-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF~--------C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPECFV--------CADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTTCC--------CSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccCCE--------ecCCCCCCCC
Confidence 45679999988753 222 22 66789988863 8888887754
No 164
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=63.30 E-value=0.53 Score=25.25 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=25.4
Q ss_pred cccccccccccCCCceeecC--CCcCcccHHhHHHHH---h-----CCCCCccccC
Q 038517 60 AICAVCLDGVHKGERSRNFS--ICKHVFHARCIDLWL---V-----RRLTCPTCRS 105 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~w~---~-----~~~~CP~Cr~ 105 (112)
..| ||-.....+ ..+.-. .|...||..|+.--- . .+..||.||.
T Consensus 11 v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 11 VRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp ECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred EEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 346 786654433 333332 388899999973110 0 1356999974
No 165
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=63.27 E-value=6 Score=23.24 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=32.5
Q ss_pred ccccccccccccC-CCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 59 AAICAVCLDGVHK-GERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 59 ~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
-..|..|-..+.. +..... . =+..||..|..+.+..+..|..|..++..
T Consensus 32 CF~C~~C~~~L~~~~~~~~~-~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYT-K-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEE-E-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEEE-E-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4567788777642 222222 2 45678888888877666689999887764
No 166
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=63.18 E-value=3.1 Score=21.51 Aligned_cols=41 Identities=15% Similarity=0.516 Sum_probs=25.8
Q ss_pred cccccccccccCCCceeecCCCcCccc--HHhHHHHHhCCCCCccccCCCCCC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFH--ARCIDLWLVRRLTCPTCRSPFKME 110 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh--~~Ci~~w~~~~~~CP~Cr~~~~~~ 110 (112)
..|+-|-+.+..++..+.. -+..|| ..|+. |-.|++++...
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF~--------C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTECFL--------CSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTTSB--------CTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCCEE--------CCCCCCcCCCC
Confidence 4578888877653333222 567788 87753 77787776543
No 167
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.07 E-value=3.7 Score=21.39 Aligned_cols=36 Identities=19% Similarity=0.526 Sum_probs=16.5
Q ss_pred ccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 61 ICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
.|+-|-+.+.. +. +.. -+..||..|+. |-.|++++.
T Consensus 7 ~C~~C~~~I~~-~~--~~a-~~~~~H~~CF~--------C~~C~~~L~ 42 (70)
T 2d8z_A 7 GCVQCKKPITT-GG--VTY-REQPWHKECFV--------CTACRKQLS 42 (70)
T ss_dssp BCSSSCCBCCS-SE--EES-SSSEEETTTSB--------CSSSCCBCT
T ss_pred CCcccCCeecc-ce--EEE-CccccCCCCCc--------cCCCCCcCC
Confidence 45555555432 21 111 44555555542 555555543
No 168
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.06 E-value=3.3 Score=22.94 Aligned_cols=40 Identities=18% Similarity=0.484 Sum_probs=26.1
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
....|+-|-+.+. ++.+. . -+..||..|+. |-.|++++..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF~--------C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEEFN--------CAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTTCB--------CSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccCCc--------cCCCCCCCCC
Confidence 4567888888773 33332 2 56778887753 7788777653
No 169
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.51 E-value=4.7 Score=25.20 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=23.5
Q ss_pred Ccccccccccccc--CCCceeecCCCcCcccHHhH
Q 038517 58 LAAICAVCLDGVH--KGERSRNFSICKHVFHARCI 90 (112)
Q Consensus 58 ~~~~C~IC~~~~~--~~~~~~~~~~C~H~fh~~Ci 90 (112)
.+..|.+|...|. .+....-.. |+|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCC-CCchhhcccc
Confidence 5788999999764 333344445 9999999996
No 170
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=61.51 E-value=8.1 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.532 Sum_probs=24.6
Q ss_pred CccccccccccccCCCceeecC--CCcCcccHHhHHHHHh
Q 038517 58 LAAICAVCLDGVHKGERSRNFS--ICKHVFHARCIDLWLV 95 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~fh~~Ci~~w~~ 95 (112)
.+..|.+|-+. ..+..-. .|...||..||+.++.
T Consensus 92 ~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 92 YQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 56678888753 2344433 4899999999999983
No 171
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=60.74 E-value=1.8 Score=31.04 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHh-------CCCCCccccCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-------RRLTCPTCRSPF 107 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-------~~~~CP~Cr~~~ 107 (112)
....|.+|...|..-..-.....||++||..|-..++. ....|-.|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45679999998864322222223999999999876542 134577776554
No 172
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=60.58 E-value=5 Score=17.82 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=19.0
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhH
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCI 90 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci 90 (112)
.+.|+.|-...-..+++. . -|..||+.|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 356888888765544443 2 5678898873
No 173
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=60.38 E-value=7.2 Score=21.04 Aligned_cols=45 Identities=22% Similarity=0.437 Sum_probs=29.9
Q ss_pred cccccccccCCCceeecCCCcCcccHHhHHHHHh-----CCCCCccccCC
Q 038517 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-----RRLTCPTCRSP 106 (112)
Q Consensus 62 C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-----~~~~CP~Cr~~ 106 (112)
--||-..+..+...+.-..|.-.||..|+.---. ....||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 3388877654455555555999999999853221 24569999753
No 174
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.06 E-value=4.8 Score=21.53 Aligned_cols=37 Identities=22% Similarity=0.597 Sum_probs=17.5
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
..|+.|-+.+.. +. +.. -+..||..|+. |-.|++++.
T Consensus 16 ~~C~~C~~~I~~-~~--v~a-~~~~~H~~CF~--------C~~C~~~L~ 52 (80)
T 2cuq_A 16 PRCARCSKTLTQ-GG--VTY-RDQPWHRECLV--------CTGCQTPLA 52 (80)
T ss_dssp CCCTTTCCCCCS-CC--EES-SSSEECTTTCB--------CSSSCCBCT
T ss_pred CcCCCCCCEecC-cE--EEE-CCchhhhhhCC--------cccCCCcCC
Confidence 345555555532 21 112 44556655542 555555553
No 175
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=56.06 E-value=6 Score=21.28 Aligned_cols=38 Identities=29% Similarity=0.704 Sum_probs=22.5
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
...|+.|-+.+. ++.+. . -+..||..|+. |-.|++++.
T Consensus 15 ~~~C~~C~~~I~-~~~v~--a-~~~~wH~~CF~--------C~~C~~~L~ 52 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GEVVS--A-LGKTYHPDCFV--------CAVCRLPFP 52 (81)
T ss_dssp CCBCTTTCCBCC-SCCEE--E-TTEEECTTTSS--------CSSSCCCCC
T ss_pred CCcCccccCEec-cceEE--E-CCceeCccCCc--------cccCCCCCC
Confidence 346777777765 33222 2 55677777753 666666654
No 176
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.22 E-value=5.7 Score=20.59 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=4.5
Q ss_pred ccccccccc
Q 038517 61 ICAVCLDGV 69 (112)
Q Consensus 61 ~C~IC~~~~ 69 (112)
.|+-|-+.+
T Consensus 7 ~C~~C~~~I 15 (69)
T 2cur_A 7 GCVKCNKAI 15 (69)
T ss_dssp CCSSSCCCC
T ss_pred CCcccCCEe
Confidence 355555544
No 177
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.80 E-value=4.1 Score=21.93 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=23.8
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPF 107 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 107 (112)
...|+-|-+.+.. +. +.. -+..||..|+. |-.|+.++
T Consensus 15 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF~--------C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVG-VF--VKL-RDRHRHPECYV--------CTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCS-SC--EEC-SSCEECTTTTS--------CSSSCCCH
T ss_pred CCccccCCCCccC-cE--EEE-CcceeCcCcCe--------eCCCCCCC
Confidence 4568888887753 32 222 56788888763 77776654
No 178
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.30 E-value=5.1 Score=20.85 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=5.3
Q ss_pred cccccccccc
Q 038517 61 ICAVCLDGVH 70 (112)
Q Consensus 61 ~C~IC~~~~~ 70 (112)
.|+-|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8x_A 7 GCHQCGEFII 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCCEec
Confidence 4555555543
No 179
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=53.98 E-value=2.6 Score=18.63 Aligned_cols=11 Identities=27% Similarity=0.869 Sum_probs=7.2
Q ss_pred CCCccccCCCC
Q 038517 98 LTCPTCRSPFK 108 (112)
Q Consensus 98 ~~CP~Cr~~~~ 108 (112)
..||+|+...+
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 35888876554
No 180
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=53.96 E-value=2.9 Score=24.24 Aligned_cols=42 Identities=19% Similarity=0.593 Sum_probs=24.5
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
.+..||+|..+++... ++.+|..|-.. ++....||-|.+++.
T Consensus 31 M~~~CP~Cq~eL~~~g--------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN--------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEET--------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecC--------CEEECccccch-hhccccCcchhhHHH
Confidence 3467999998764321 22234444221 334566999988774
No 181
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.45 E-value=6.2 Score=20.89 Aligned_cols=9 Identities=22% Similarity=0.759 Sum_probs=4.2
Q ss_pred CcCcccHHh
Q 038517 81 CKHVFHARC 89 (112)
Q Consensus 81 C~H~fh~~C 89 (112)
-+..||..|
T Consensus 23 ~~~~wH~~C 31 (73)
T 1wig_A 23 GEKHYHPSC 31 (73)
T ss_dssp SSCCBCTTT
T ss_pred CCCCCCCCc
Confidence 344455544
No 182
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=51.25 E-value=11 Score=22.06 Aligned_cols=8 Identities=38% Similarity=1.306 Sum_probs=4.1
Q ss_pred CccccCCC
Q 038517 100 CPTCRSPF 107 (112)
Q Consensus 100 CP~Cr~~~ 107 (112)
|-.|.+++
T Consensus 97 C~~C~~~L 104 (131)
T 2xjy_A 97 CAACQKHF 104 (131)
T ss_dssp CTTTCCBC
T ss_pred cCCCCCCC
Confidence 55555544
No 183
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=50.94 E-value=3.2 Score=22.43 Aligned_cols=16 Identities=44% Similarity=1.043 Sum_probs=9.3
Q ss_pred HHhCCCCCccccCCCC
Q 038517 93 WLVRRLTCPTCRSPFK 108 (112)
Q Consensus 93 w~~~~~~CP~Cr~~~~ 108 (112)
|+...-.||.|+.++.
T Consensus 4 ~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 4 KLLDILACPICKGPLK 19 (69)
T ss_dssp CGGGTCCCTTTCCCCE
T ss_pred HHHhheeCCCCCCcCe
Confidence 3444456777776654
No 184
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.32 E-value=7.1 Score=21.01 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=23.2
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
...|+-|-+.+. ++.+. . -+..||..|+ +|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIID-EQPLI--F-KNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCC-SCCCC--C-SSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCccCCCEec-ceEEE--E-CcceeCCCCC--------EeCCCCCccCC
Confidence 455777777765 23222 2 5666777764 37777766653
No 185
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.23 E-value=1 Score=24.98 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=12.6
Q ss_pred CCcCcccHHhHHHH
Q 038517 80 ICKHVFHARCIDLW 93 (112)
Q Consensus 80 ~C~H~fh~~Ci~~w 93 (112)
.|++.|+..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 49999999998887
No 186
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.67 E-value=2.4 Score=22.13 Aligned_cols=37 Identities=22% Similarity=0.471 Sum_probs=23.4
Q ss_pred cccccccccccCCCceeec--CC--CcCcccHHhHHHHHhC
Q 038517 60 AICAVCLDGVHKGERSRNF--SI--CKHVFHARCIDLWLVR 96 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~--~~--C~H~fh~~Ci~~w~~~ 96 (112)
..||-|...++..+.-..+ .. |++.|+..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3477777766544322111 22 7889999998888653
No 187
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=47.46 E-value=5.6 Score=23.63 Aligned_cols=40 Identities=20% Similarity=0.482 Sum_probs=27.7
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
....|+-|-+.+.....+. . -+..||..|+. |-.|+.++.
T Consensus 60 ~~~~C~~C~~~I~~~~~v~--a-~~~~wH~~CF~--------C~~C~~~L~ 99 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLLY--A-MDSYWHSRCLK--------CSSCQAQLG 99 (123)
T ss_dssp SCSBBSSSSSBCCSSSEEE--E-TTEEEETTTSB--------CTTTCCBGG
T ss_pred cCCcCcCCCCCcCCcEEEE--e-CCcEEcccccC--------cCcCCCccc
Confidence 4567999998876432232 2 67789988864 888888774
No 188
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=47.30 E-value=4.6 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=30.5
Q ss_pred ccccccccccCCCceeecCCCcCcccHHhHHHHHh-----CCCCCccccCC
Q 038517 61 ICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-----RRLTCPTCRSP 106 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-----~~~~CP~Cr~~ 106 (112)
...||...+..+...+....|.-.||..|+.---. ....||.|+..
T Consensus 6 ~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~ 56 (447)
T 3kv4_A 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVL 56 (447)
T ss_dssp EETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHH
T ss_pred eEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccc
Confidence 34588887654455555556999999999842111 24579999753
No 189
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.61 E-value=6.3 Score=21.18 Aligned_cols=37 Identities=19% Similarity=0.538 Sum_probs=17.0
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
..|+-|-+.+. +..+ .. -+..||..|+. |..|++++.
T Consensus 16 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF~--------C~~C~~~L~ 52 (81)
T 2dlo_A 16 EKCATCSQPIL-DRIL--RA-MGKAYHPGCFT--------CVVCHRGLD 52 (81)
T ss_dssp CBCTTTCCBCC-SCCE--EE-TTEEECTTTCB--------CSSSCCBCT
T ss_pred CccccCCCeec-ceeE--EE-CCccccHHhcC--------cccCCCccC
Confidence 34555555553 1211 11 34455655532 555555543
No 190
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=46.25 E-value=8.2 Score=21.53 Aligned_cols=10 Identities=30% Similarity=0.909 Sum_probs=5.3
Q ss_pred cccccccccc
Q 038517 61 ICAVCLDGVH 70 (112)
Q Consensus 61 ~C~IC~~~~~ 70 (112)
.||.|..++.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 4555655543
No 191
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=46.22 E-value=6.4 Score=24.96 Aligned_cols=37 Identities=30% Similarity=0.754 Sum_probs=18.5
Q ss_pred ccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCC
Q 038517 61 ICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPF 107 (112)
Q Consensus 61 ~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 107 (112)
.|..|-..+...+.+.. . -++.||..|+ +|-.|.+.+
T Consensus 71 ~C~~C~~~I~~~e~~i~-a-~~~~~H~~CF--------~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMR-A-QGNVYHLKCF--------TCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEE-E-TTEEECGGGC--------BCTTTCCBC
T ss_pred ccccCCCccccCcEEEE-c-CCCEEeCCCC--------eECCCCCCC
Confidence 36666665543232221 1 4556666663 355565554
No 192
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=45.51 E-value=1.7 Score=24.34 Aligned_cols=18 Identities=28% Similarity=0.798 Sum_probs=14.2
Q ss_pred eecCCCcCcccHHhHHHH
Q 038517 76 RNFSICKHVFHARCIDLW 93 (112)
Q Consensus 76 ~~~~~C~H~fh~~Ci~~w 93 (112)
+.-+.|++.||..|-..|
T Consensus 44 v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 44 ATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp EECTTTCCEECSSSCSBC
T ss_pred eEeCCCCCccccccCCch
Confidence 445569999999988777
No 193
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=44.45 E-value=2.6 Score=22.67 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=9.1
Q ss_pred HHhCCCCCccccCCCC
Q 038517 93 WLVRRLTCPTCRSPFK 108 (112)
Q Consensus 93 w~~~~~~CP~Cr~~~~ 108 (112)
|+..--.||.|+.++.
T Consensus 6 ~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 6 QLLEVLACPKDKGPLR 21 (67)
T ss_dssp GGTCCCBCTTTCCBCE
T ss_pred HHHHHhCCCCCCCcCe
Confidence 4444555777766553
No 194
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=43.91 E-value=10 Score=23.55 Aligned_cols=8 Identities=25% Similarity=1.061 Sum_probs=3.7
Q ss_pred CccccCCC
Q 038517 100 CPTCRSPF 107 (112)
Q Consensus 100 CP~Cr~~~ 107 (112)
|-.|++.+
T Consensus 96 C~~C~~~L 103 (169)
T 2rgt_A 96 CVVCKRQL 103 (169)
T ss_dssp CTTTCCBC
T ss_pred CCCCCCCC
Confidence 44444443
No 195
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=42.94 E-value=3.7 Score=21.52 Aligned_cols=43 Identities=28% Similarity=0.671 Sum_probs=27.2
Q ss_pred CccccccccccccCCCceeecCC--Cc-CcccHHhHHHHHhC----CCCCccccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSI--CK-HVFHARCIDLWLVR----RLTCPTCRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~--C~-H~fh~~Ci~~w~~~----~~~CP~Cr~ 105 (112)
+...| ||.... .+ ..+.-.. |. ..||..|+. +.. .-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YG-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CC-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34556 898863 23 3444444 44 789999987 322 346999975
No 196
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.04 E-value=11 Score=20.05 Aligned_cols=37 Identities=24% Similarity=0.576 Sum_probs=17.8
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
..|+.|-+.+.. +.+. . -+..||..|+. |..|++++.
T Consensus 16 ~~C~~C~~~I~~-~~v~--a-~~~~~H~~CF~--------C~~C~~~L~ 52 (80)
T 1x3h_A 16 PKCGGCNRPVLE-NYLS--A-MDTVWHPECFV--------CGDCFTSFS 52 (80)
T ss_dssp CBCTTTCCBCCS-SCEE--E-TTEEECTTTCB--------CSSSCCBSC
T ss_pred CccccCCCeecc-eeEE--E-CCCeEecCcCC--------hhhCCCCCC
Confidence 346666655542 2221 1 34456655542 556655554
No 197
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=39.27 E-value=9.1 Score=24.30 Aligned_cols=38 Identities=21% Similarity=0.566 Sum_probs=19.9
Q ss_pred cccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 60 AICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 60 ~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
..|+.|-+.+..++.+.. -+..||..|+. |-.|+.++.
T Consensus 116 ~~C~~C~~~I~~~~~v~a---~~~~~H~~CF~--------C~~C~~~L~ 153 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVIG---AGKSWHKSCFR--------CAKCGKSLE 153 (192)
T ss_dssp EECTTTSCEECSSSCEEE---TTEEECTTTCB--------CTTTCCBCC
T ss_pred CcCCCCCCEecCcEEEec---CCCccchhcCC--------ccccCCCCC
Confidence 347777766654443321 34556665542 555555553
No 198
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=39.05 E-value=14 Score=21.56 Aligned_cols=25 Identities=12% Similarity=0.345 Sum_probs=11.4
Q ss_pred cCcccHHhHHHHHhCCCCCccccCCCC
Q 038517 82 KHVFHARCIDLWLVRRLTCPTCRSPFK 108 (112)
Q Consensus 82 ~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 108 (112)
+..||..|..+. -...|..|.+++.
T Consensus 50 g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CEEechHHhCcC--cCccCcccCCcCC
Confidence 344555554332 2344555555544
No 199
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=38.50 E-value=14 Score=18.27 Aligned_cols=41 Identities=20% Similarity=0.536 Sum_probs=26.0
Q ss_pred cccccccCCCceeecCCCcCcccHHhHHHHHh---CCCCCccccC
Q 038517 64 VCLDGVHKGERSRNFSICKHVFHARCIDLWLV---RRLTCPTCRS 105 (112)
Q Consensus 64 IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~---~~~~CP~Cr~ 105 (112)
||..... +...+.-..|+..||..|+.---. ....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 5666543 444555555999999999853221 3457998864
No 200
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=37.95 E-value=5.3 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=14.5
Q ss_pred CCcCcccHHhHHHHHhCCCCCccccCCC
Q 038517 80 ICKHVFHARCIDLWLVRRLTCPTCRSPF 107 (112)
Q Consensus 80 ~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~ 107 (112)
.|||.|-.. .....||.|..++
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCCcccCC------CCCCcCCCCCCcc
Confidence 388887642 2234799998764
No 201
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=37.83 E-value=23 Score=26.29 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=31.0
Q ss_pred ccccccccccccCCCceeecCCCcCcccHHhHHHHHh-----CCCCCccccC
Q 038517 59 AAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV-----RRLTCPTCRS 105 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~-----~~~~CP~Cr~ 105 (112)
...| ||...+..+...+....|.-.||..|+.---. ....||.|+.
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 3445 99887754555555556999999999843211 1356999974
No 202
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=36.91 E-value=28 Score=20.20 Aligned_cols=26 Identities=27% Similarity=0.655 Sum_probs=17.8
Q ss_pred CCcCcccHHhHH------HHHhC-----CCCCccccC
Q 038517 80 ICKHVFHARCID------LWLVR-----RLTCPTCRS 105 (112)
Q Consensus 80 ~C~H~fh~~Ci~------~w~~~-----~~~CP~Cr~ 105 (112)
.|+..||..|+. +-+.+ ...||.|..
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 399999999952 12222 367999965
No 203
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.95 E-value=7.8 Score=22.38 Aligned_cols=12 Identities=25% Similarity=0.816 Sum_probs=8.0
Q ss_pred CCCCccccCCCC
Q 038517 97 RLTCPTCRSPFK 108 (112)
Q Consensus 97 ~~~CP~Cr~~~~ 108 (112)
...||+|.+++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 446888877654
No 204
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.26 E-value=25 Score=17.45 Aligned_cols=11 Identities=27% Similarity=0.778 Sum_probs=7.7
Q ss_pred CCCccccCCCC
Q 038517 98 LTCPTCRSPFK 108 (112)
Q Consensus 98 ~~CP~Cr~~~~ 108 (112)
-.||+|...+.
T Consensus 24 IrCpyCGyrii 34 (48)
T 4ayb_P 24 VRCPYCGYKII 34 (48)
T ss_dssp SCCTTTCCSCE
T ss_pred cccCccCcEEE
Confidence 45888877654
No 205
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=34.26 E-value=13 Score=23.32 Aligned_cols=46 Identities=11% Similarity=0.151 Sum_probs=26.8
Q ss_pred CccccccccccccCCCceeecCCCcCcccHHhHHHHHhCCCCCccccCCCCC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICKHVFHARCIDLWLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 109 (112)
.-..|..|-..+.... . . . =+..||..|..+-+ ...|..|...+..
T Consensus 86 ~CF~C~~C~~~L~~~~-f-~-~-~g~~yC~~~y~~~f--~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC-F-S-R-GESVYCKDDFFKRF--GTKCAACQLGIPP 131 (182)
T ss_dssp STTSCTTTCCCCSSCC-E-E-E-TTEEECHHHHHHTT--SCCCTTTCCCCCS
T ss_pred ccCccCCCCCccCCCc-e-e-E-CCEeeecCcccccc--ccccccCCCccCC
Confidence 4567778877775432 1 1 1 45667777765432 3567777766643
No 206
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=34.02 E-value=1.8 Score=18.17 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=8.0
Q ss_pred cccHHhHHHHHh
Q 038517 84 VFHARCIDLWLV 95 (112)
Q Consensus 84 ~fh~~Ci~~w~~ 95 (112)
.||..|-++|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 467777777764
No 207
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=32.29 E-value=2.2 Score=22.01 Aligned_cols=12 Identities=42% Similarity=1.251 Sum_probs=6.6
Q ss_pred CCCCCccccCCC
Q 038517 96 RRLTCPTCRSPF 107 (112)
Q Consensus 96 ~~~~CP~Cr~~~ 107 (112)
.--.||.|+.++
T Consensus 9 ~iL~CP~c~~~L 20 (56)
T 2kpi_A 9 EILACPACHAPL 20 (56)
T ss_dssp TSCCCSSSCSCE
T ss_pred hheeCCCCCCcc
Confidence 334566666654
No 208
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.81 E-value=25 Score=22.13 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=13.6
Q ss_pred cCCCcCcccHHhHHHHHhCCCCCccccCC
Q 038517 78 FSICKHVFHARCIDLWLVRRLTCPTCRSP 106 (112)
Q Consensus 78 ~~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~ 106 (112)
.+.|||++-. .-...||+|..+
T Consensus 141 C~~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 141 CPICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp CTTTCCEEES-------CCCSBCTTTCCB
T ss_pred eCCCCCeeCC-------CCCCCCCCCCCC
Confidence 3348887652 223579999754
No 209
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.15 E-value=26 Score=20.08 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=17.3
Q ss_pred ccccccccccccC-CCceeecCCCcCcccHHhHHHHHh
Q 038517 59 AAICAVCLDGVHK-GERSRNFSICKHVFHARCIDLWLV 95 (112)
Q Consensus 59 ~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci~~w~~ 95 (112)
-..|..|-..+.. +...... =+..||..|..+-+.
T Consensus 30 CF~C~~C~~~L~~~g~~~~~~--~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLGG 65 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCCCB--TTBCCCHHHHHHHHT
T ss_pred cCcccccCCchhcCCCeeEEE--CCeeechHHHHHHhC
Confidence 4566666666542 2222111 345566666665554
No 210
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.69 E-value=5.2 Score=21.49 Aligned_cols=17 Identities=18% Similarity=0.499 Sum_probs=10.5
Q ss_pred HHhCCCCCccccCCCCC
Q 038517 93 WLVRRLTCPTCRSPFKM 109 (112)
Q Consensus 93 w~~~~~~CP~Cr~~~~~ 109 (112)
|+..--.||.|+.++..
T Consensus 4 ~LL~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLEY 20 (68)
T ss_dssp SSSCCCBCSSSCCBCEE
T ss_pred HHhhheECCCCCCcCeE
Confidence 33444568888877643
No 211
>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}
Probab=26.65 E-value=33 Score=17.58 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=8.2
Q ss_pred CCCCccccCCCC
Q 038517 97 RLTCPTCRSPFK 108 (112)
Q Consensus 97 ~~~CP~Cr~~~~ 108 (112)
+..||+|-....
T Consensus 28 ~gqCPYC~~~~e 39 (57)
T 2k9h_A 28 NGQCPYCMTITE 39 (57)
T ss_dssp TTBCTTTCCBCC
T ss_pred CCCCCcccCcCC
Confidence 667888866543
No 212
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.99 E-value=5.2 Score=21.49 Aligned_cols=13 Identities=38% Similarity=1.114 Sum_probs=8.3
Q ss_pred CCCCccccCCCCC
Q 038517 97 RLTCPTCRSPFKM 109 (112)
Q Consensus 97 ~~~CP~Cr~~~~~ 109 (112)
--.||.|+.++..
T Consensus 8 iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 8 ILVCPLCKGPLVF 20 (68)
T ss_dssp ECBCTTTCCBCEE
T ss_pred heECCCCCCcCeE
Confidence 3458888776643
No 213
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.75 E-value=44 Score=21.58 Aligned_cols=21 Identities=29% Similarity=0.679 Sum_probs=13.3
Q ss_pred CCCcCcccHHhHHHHHhCCCCCccccCC
Q 038517 79 SICKHVFHARCIDLWLVRRLTCPTCRSP 106 (112)
Q Consensus 79 ~~C~H~fh~~Ci~~w~~~~~~CP~Cr~~ 106 (112)
+.|||++-. .....||+|..+
T Consensus 175 ~~CG~i~~g-------~~p~~CP~C~~~ 195 (202)
T 1yuz_A 175 PICGYIHKG-------EDFEKCPICFRP 195 (202)
T ss_dssp SSSCCEEES-------SCCSBCTTTCCB
T ss_pred CCCCCEEcC-------cCCCCCCCCCCC
Confidence 348887542 123579999764
No 214
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.46 E-value=17 Score=23.21 Aligned_cols=21 Identities=29% Similarity=0.611 Sum_probs=13.2
Q ss_pred CCcCcccHHhHHHHHhCCCCCccccCC
Q 038517 80 ICKHVFHARCIDLWLVRRLTCPTCRSP 106 (112)
Q Consensus 80 ~C~H~fh~~Ci~~w~~~~~~CP~Cr~~ 106 (112)
.|||++-.+ .-...||+|..+
T Consensus 160 ~CG~~~~g~------~~p~~CP~C~~~ 180 (191)
T 1lko_A 160 NCGYVHEGT------GAPELCPACAHP 180 (191)
T ss_dssp TTCCEEEEE------ECCSBCTTTCCB
T ss_pred CCCCEeeCC------CCCCCCCCCcCC
Confidence 488876522 123489999874
No 215
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=25.18 E-value=2.1 Score=20.57 Aligned_cols=16 Identities=19% Similarity=0.706 Sum_probs=12.0
Q ss_pred HHhHHHHHhCCCCCcc
Q 038517 87 ARCIDLWLVRRLTCPT 102 (112)
Q Consensus 87 ~~Ci~~w~~~~~~CP~ 102 (112)
..||..|.+.+.+|..
T Consensus 18 mkCiyAWYnqq~sCq~ 33 (43)
T 2roo_A 18 YNCVYAWYNQQSSCER 33 (43)
T ss_dssp CEEEECGGGSSEEEEC
T ss_pred HHHHHHHHccCCchhh
Confidence 3588899988877743
No 216
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=24.64 E-value=2.1 Score=20.45 Aligned_cols=16 Identities=31% Similarity=0.821 Sum_probs=12.0
Q ss_pred HHhHHHHHhCCCCCcc
Q 038517 87 ARCIDLWLVRRLTCPT 102 (112)
Q Consensus 87 ~~Ci~~w~~~~~~CP~ 102 (112)
..||..|.+.+.+|..
T Consensus 18 mkCiyAWYnqq~sCq~ 33 (42)
T 1qdp_A 18 MKCIYAWYNQQGSCQT 33 (42)
T ss_dssp CEEECCSSCSCCEEES
T ss_pred HHHHHHHHccCCchHH
Confidence 3588889988887753
No 217
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=24.58 E-value=30 Score=15.44 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=12.6
Q ss_pred ccccccccccccCCCcee
Q 038517 59 AAICAVCLDGVHKGERSR 76 (112)
Q Consensus 59 ~~~C~IC~~~~~~~~~~~ 76 (112)
-.+|+.|...-..|+..+
T Consensus 9 fhecalcysitdpgerqr 26 (36)
T 2jyp_A 9 FHECALCYSITDPGERQR 26 (36)
T ss_dssp TTCCSSSTTTTTTTCTTC
T ss_pred cchheeEEeecCcchhhh
Confidence 356999988776666554
No 218
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.51 E-value=15 Score=19.72 Aligned_cols=12 Identities=33% Similarity=0.910 Sum_probs=8.5
Q ss_pred CCCCccccCCCC
Q 038517 97 RLTCPTCRSPFK 108 (112)
Q Consensus 97 ~~~CP~Cr~~~~ 108 (112)
...||+|.+++.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 345888888764
No 219
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=24.14 E-value=33 Score=20.94 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=16.0
Q ss_pred cccccccccccCC-CceeecCCCcCcc
Q 038517 60 AICAVCLDGVHKG-ERSRNFSICKHVF 85 (112)
Q Consensus 60 ~~C~IC~~~~~~~-~~~~~~~~C~H~f 85 (112)
..||-|-.+|.-. ......|.|+|.+
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEE
T ss_pred CCCCCCCCcceEecCCeEECCcccccc
Confidence 3499998877422 2344556688854
No 220
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.07 E-value=36 Score=18.64 Aligned_cols=33 Identities=18% Similarity=0.515 Sum_probs=20.9
Q ss_pred CccccccccccccC-CCceeecCCCcCcccHHhH
Q 038517 58 LAAICAVCLDGVHK-GERSRNFSICKHVFHARCI 90 (112)
Q Consensus 58 ~~~~C~IC~~~~~~-~~~~~~~~~C~H~fh~~Ci 90 (112)
.+-.|+.|.+.|-. .+.-..-+.|.|..+.+|-
T Consensus 24 ~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Cr 57 (76)
T 2csz_A 24 SDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCR 57 (76)
T ss_dssp CCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSE
T ss_pred CccchhhhCccccccccCCCcCcccChhhccccc
Confidence 56789999998742 1122222338888888773
No 221
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=23.02 E-value=37 Score=19.12 Aligned_cols=43 Identities=21% Similarity=0.456 Sum_probs=26.8
Q ss_pred CccccccccccccCCCceeecCCCc---CcccHHhHHHHHh----CCCCCcc-ccC
Q 038517 58 LAAICAVCLDGVHKGERSRNFSICK---HVFHARCIDLWLV----RRLTCPT-CRS 105 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~~~~~~~~~C~---H~fh~~Ci~~w~~----~~~~CP~-Cr~ 105 (112)
+...| ||..... + ..+.-..|. -.||..|+. +. ..-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~-g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSY-G-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCS-S-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCC-C-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 45567 8987532 3 344444455 689999985 32 2346999 864
No 222
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.37 E-value=29 Score=14.82 Aligned_cols=9 Identities=33% Similarity=1.165 Sum_probs=5.7
Q ss_pred CCccccCCC
Q 038517 99 TCPTCRSPF 107 (112)
Q Consensus 99 ~CP~Cr~~~ 107 (112)
.||+|.+-+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 478886543
No 223
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=21.26 E-value=29 Score=20.00 Aligned_cols=45 Identities=16% Similarity=0.357 Sum_probs=25.4
Q ss_pred cccccccccCCCceeecCCCcCcccHHhHHHHHh----C----CCCCccccCC
Q 038517 62 CAVCLDGVHKGERSRNFSICKHVFHARCIDLWLV----R----RLTCPTCRSP 106 (112)
Q Consensus 62 C~IC~~~~~~~~~~~~~~~C~H~fh~~Ci~~w~~----~----~~~CP~Cr~~ 106 (112)
|..|.+....+..+..-..|...||..|+..-.. . ...||.|+..
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 4444444433344544455999999999764221 1 1359999753
No 224
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=20.54 E-value=72 Score=24.94 Aligned_cols=39 Identities=26% Similarity=0.577 Sum_probs=26.7
Q ss_pred CccccccccccccCC-------CceeecCCCcCcccHHhHHHHHhCC
Q 038517 58 LAAICAVCLDGVHKG-------ERSRNFSICKHVFHARCIDLWLVRR 97 (112)
Q Consensus 58 ~~~~C~IC~~~~~~~-------~~~~~~~~C~H~fh~~Ci~~w~~~~ 97 (112)
-..+||+|+-...+. ..-..+. |+-+||..|....++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~c~~c~~~~~~~~ 57 (776)
T 4gut_A 12 CTATCPVCFASASERCAKNGYTSRWYHLS-CGEHFCNECFDHYYRSH 57 (776)
T ss_dssp CCCSSCCBSCCCSTTCCTTSCBSCEEEEE-TTEEEEHHHHHHHHSTT
T ss_pred CcccccHHHHHHHHHHHhCCCCcceeEec-cccchhHHHHHHHhccC
Confidence 346788888765421 1345566 99889999999877653
Done!