BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038518
(131 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 39 SLYEVLRVEPKATISEIKTAK-----VYHPDLSGN-GRDFTEIHNTYETLLDPKAKAVYD 92
+ Y+VL V+P AT E+K A YHPD + N G F +I YE L D K + +YD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 40 LYEVLRVEPKATISEIK-----TAKVYHPDL-SGNGRDFTEIHNTYETLLDPKAKAVYDM 93
LY++L V P A E+K A YHPD +G+ F EI +E L DP+ + +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 41 YEVLRVEPKATISEIKTAK-----VYHPDLSGNG-RDFTEIHNTYETLLDPKAKAVYDMS 94
Y+VL V+P A+ +E+K A +HPD + +G F +I YE L D K + +YD
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQG 70
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
YE+L V A EI+ A YHPD + ++ F EI YE L D + +A Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 92 DM 93
D
Sbjct: 66 DQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
YE+L V A EI+ A YHPD + ++ F EI YE L D + +A Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 92 DM 93
D
Sbjct: 66 DQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
YE+L V A EI+ A YHPD + ++ F EI YE L D + +A Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 92 DM 93
D
Sbjct: 66 DQ 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG----RDFTEIHNTYETLLDP 85
G+ G Y++L V A+ EIK AK YHPD + + F+++ YE L D
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 86 KAKAVYD 92
+ YD
Sbjct: 64 VKRKQYD 70
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 33 ALGTRG-SLYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD----FTEIHNTYETL 82
+L T G SLY VL ++ AT +IK A YHPD + + + F EI+N + L
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 83 LDPKAKAVYD 92
D + +YD
Sbjct: 71 TDATKRNIYD 80
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 15/73 (20%)
Query: 35 GTRGS-----LYEVLRVEPKATISEIKTAKV-----YHPDLSGNGRD-----FTEIHNTY 79
G+ GS YEVL V+ A+ +IK A +HPD + + ++ F + Y
Sbjct: 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 80 ETLLDPKAKAVYD 92
E L D K +++YD
Sbjct: 61 EVLSDSKKRSLYD 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%)
Query: 41 YEVLRVEPKATISEIKTAKV-----YHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
Y+ L + A+ EIK A YHPD + G F EI Y+ L DP+ + ++D
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 36 TRGSLYEVLRVEPKATISEIKTAK-----VYHPDLSGNGRD----FTEIHNTYETLLDPK 86
+R +LY++L V AT ++IK A +YHPD + + FT I Y L
Sbjct: 15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSAT 74
Query: 87 AKAVYDMSLV 96
+ YD L+
Sbjct: 75 LRRKYDRGLL 84
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 39 SLYEVLRVEPKATISEIKTAK-----VYHPDLSGNGRDFTE-----IHNTYETLLDPKAK 88
S YE+L V A+ +IK A +HPD + + ++F E + YE L D +
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 89 AVYD 92
+YD
Sbjct: 63 EIYD 66
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 35 GTRGS-----LYEVLRVEPKATISEIKTAK-----VYHPDLSGNGRD-----FTEIHNTY 79
G+ GS YEVL V +A+ IK A +HPD + ++ F ++ Y
Sbjct: 1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAY 60
Query: 80 ETLLDPKAKAVYD 92
E L D K + +YD
Sbjct: 61 EVLSDAKKRDIYD 73
>pdb|2DZJ|A Chain A, 2dzjSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like
Domain In Human Synaptic Glycoprotein Sc2
Length = 88
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 18/70 (25%)
Query: 28 EMPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTY----ETL- 82
E+ ++ TR L + +VEP ATI+EIK FT+ H + ++L
Sbjct: 12 EVEILDAKTREKLCFLDKVEPHATIAEIKNL-------------FTKTHPQWYPARQSLR 58
Query: 83 LDPKAKAVYD 92
LDPK K++ D
Sbjct: 59 LDPKGKSLKD 68
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYD 92
Y++L V A+ +IK A YHPD + + F EI YETL D + YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 39 SLYEVLRVEPKATISEI-----KTAKVYHPDLSGNG----RDFTEIHNTYETLLDPKAKA 89
+ Y +L V A+ EI K A HPD + N DF +I+ YE L D +
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 90 VYD 92
YD
Sbjct: 63 KYD 65
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 39 SLYEVLRVEPKATISEI-----KTAKVYHPDLSGNG----RDFTEIHNTYETLLDPKAKA 89
+ Y +L V A+ EI K A HPD + N DF +I+ YE L D +
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 90 VYD 92
YD
Sbjct: 82 KYD 84
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 9/58 (15%)
Query: 29 MPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPK 86
+P + + + SL EV+R +PK +Y L G +FT I + YE +P+
Sbjct: 112 IPFLEIYVKASLEEVIRRDPKG---------LYKKALKGELENFTGITDPYEPPENPQ 160
>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At4g09670
pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At4g09670
pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
Length = 362
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 44 LRVEPKATISEIKTAKVYHPDLSGNGRDF---TEIHNTYETLL-DPKAKAVY 91
+ + P ATIS + + + ++ T+IH +YE+LL DP+ A+Y
Sbjct: 25 IHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALY 76
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 15/71 (21%)
Query: 39 SLYEVLRVEPKATISEIKTAKVY-------HPDLSGNGRD-------FTEIHNTYETLLD 84
+ Y+VL V + + K AK Y HPD N + F I YETL D
Sbjct: 16 NCYDVLEVN-REEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74
Query: 85 PKAKAVYDMSL 95
+AK YD L
Sbjct: 75 DEAKTNYDYYL 85
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 44 LRVEPKATISEIKTAKVYHPDLSGNGRDFTEI 75
L + PK + I KV+ PDL G+D E+
Sbjct: 567 LLLPPKGQLGMIDYEKVFSPDLKNAGQDIFEL 598
>pdb|2EHH|A Chain A, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|C Chain C, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|D Chain D, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
pdb|2EHH|E Chain E, Crystal Structure Of Dihydrodipicolinate Synthase From
Aquifex Aeolicus
Length = 294
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 26 SVEMPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIH 76
S+ +P+MALG +G + V P+ I+ A L G+ R EIH
Sbjct: 189 SLTLPMMALGAKGVISVANNVMPREVKELIRAA------LEGDFRRAREIH 233
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 59 KVYHPD--LSGNGRD-------FTEIHNTYETLLDPKAKAVYDMSL 95
K +HPD + + RD +I++ Y+TL DP +A Y +SL
Sbjct: 32 KRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEYLLSL 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,243,999
Number of Sequences: 62578
Number of extensions: 99591
Number of successful extensions: 254
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 25
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)