BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038519
         (324 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DJP|A Chain A, The Solution Structure Of The Lysm Domain Of Human
          Hypothetical Protein Sb145
          Length = 77

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
          +EHQ+   DTLAG+A+KYGV +  I++ N L T+  +F  KTL IP+
Sbjct: 16 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 62


>pdb|1E0G|A Chain A, Lysm Domain From E.Coli Mltd
          Length = 48

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 25/36 (69%)

Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQ 66
          I ++V K D+L+ IA ++GV++ D+ + N  + +LQ
Sbjct: 3  ITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQ 38


>pdb|3MWC|A Chain A, Crystal Structure Of Probable O-Succinylbenzoic Acid
           Synthet Kosmotoga Olearia
          Length = 400

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 102 TPDHHVQHDLFDSFRSLRLKSKPQWKVSP 130
           T  H V+  L + +R +++K KP W V P
Sbjct: 166 TLIHQVEESLQEGYRRIKIKIKPGWDVEP 194


>pdb|1K9O|I Chain I, Crystal Structure Of Michaelis Serpin-Trypsin Complex
          Length = 378

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 216 GEWKDKLVRRRQKSED-----DSSTSVPEMLLKEDNSNTGGVPSITGKGLAL 262
           G WKDK V+ R    D     D +  VP M+ K+D      VP +  K + +
Sbjct: 174 GSWKDKFVKERTMDRDFHVSKDKTIKVPTMIGKKD-VRYADVPELDAKMIEM 224


>pdb|3A4U|A Chain A, Crystal Structure Of Mcfd2 In Complex With Carbohydrate
           Recognition Domain Of Ergic-53
          Length = 255

 Score = 28.9 bits (63), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 60  GLSTDLQMFALKTLQIPLPGKHPPSP 85
           GL+ D  + +  T Q+  PGK PP+P
Sbjct: 222 GLADDHDVLSFLTFQLTEPGKEPPTP 247


>pdb|3LCP|A Chain A, Crystal Structure Of The Carbohydrate Recognition Domain
           Of Complex With Mcfd2
 pdb|3LCP|B Chain B, Crystal Structure Of The Carbohydrate Recognition Domain
           Of Complex With Mcfd2
          Length = 247

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 60  GLSTDLQMFALKTLQIPLPGKHPPSP 85
           GL+ D  + +  T Q+  PGK PP+P
Sbjct: 222 GLADDHDVLSFLTFQLTEPGKEPPTP 247


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,939,291
Number of Sequences: 62578
Number of extensions: 405588
Number of successful extensions: 782
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 7
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)