BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038519
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Bos taurus GN=LYSMD1 PE=2 SV=1
Length = 225
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
+EHQ++ DTLAG+A+KYGV + I++ N L T+ +F KTL IP+
Sbjct: 40 LEHQLAPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLHIPI 86
>sp|Q9D7V2|LYSM2_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Mus musculus GN=Lysmd2 PE=2 SV=2
Length = 215
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 25 LGRRGI---IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGKH 81
LG R I +EH+V DTL GIA+KYGV + I++ N L T+ +F KTL IP+ +
Sbjct: 62 LGARVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLSIPILSE- 120
Query: 82 PPSPCLSNG 90
P L NG
Sbjct: 121 --KPLLFNG 127
>sp|Q9D0E3|LYSM1_MOUSE LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Mus musculus GN=Lysmd1 PE=1 SV=1
Length = 226
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
+EHQ+ DTLAG+A+KYGV + I++ N L T+ +F KTL IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPI 86
>sp|Q5HZA4|LYSM1_RAT LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Rattus norvegicus GN=Lysmd1 PE=2 SV=1
Length = 227
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
+EHQ+ DTLAG+A+KYGV + I++ N L T+ +F KTL IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPI 86
>sp|Q6P606|LYSM4_DANRE LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Danio rerio GN=lysmd4 PE=2 SV=2
Length = 267
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 23 EDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
E +G ++E +S D L+ +A++YG VADI+++N L + M+ALK+++IP+
Sbjct: 62 EGVGEMLLLERDISHEDNLSKLALQYGCKVADIKRVNNLFQEQDMYALKSIKIPV 116
>sp|Q96S90|LYSM1_HUMAN LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Homo sapiens GN=LYSMD1 PE=1 SV=1
Length = 227
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
+EHQ+ DTLAG+A+KYGV + I++ N L T+ +F KTL IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86
>sp|Q9N012|LYSM1_MACFA LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Macaca fascicularis GN=LYSMD1 PE=2 SV=1
Length = 227
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
+EHQ+ DTLAG+A+KYGV + I++ N L T+ +F KTL IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86
>sp|Q8IV50|LYSM2_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Homo sapiens GN=LYSMD2 PE=1 SV=1
Length = 215
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGKHPPSPCLSNG 90
+EH+V DTL GIA+KYGV + I++ N L T+ +F KTL IP+ + P L NG
Sbjct: 71 VEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEK---PLLFNG 127
>sp|Q1JQA8|LYSM2_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Bos taurus GN=LYSMD2 PE=2 SV=1
Length = 215
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGKHPPSPCLSNG 90
+EH+V DTL GIA+KYGV + I++ N L T+ +F KTL IP+ + P L NG
Sbjct: 72 VEHRVRAGDTLQGIALKYGVSMEQIKRANKLFTNDCIFLKKTLNIPVISE---KPLLFNG 128
>sp|Q6DCC7|LYSM4_XENLA LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Xenopus laevis GN=lysmd4 PE=2 SV=1
Length = 289
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 39/55 (70%)
Query: 23 EDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
E +G ++E +++ D L +A++YG V+DI+++N L TD ++ALKT++IP+
Sbjct: 63 EKVGNVILLERAITEDDNLNKLALQYGCKVSDIKRVNNLITDQDIYALKTIKIPV 117
>sp|Q3B7I8|LYSM2_XENTR LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus tropicalis GN=lysmd2 PE=2 SV=1
Length = 207
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGK 80
IEH++S DTL GIA+KYGV + I++ N L + +F K+L IP+ K
Sbjct: 61 IEHRLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIPVISK 110
>sp|Q5PQ30|LYSM1_XENLA LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Xenopus laevis GN=lysmd1 PE=2 SV=1
Length = 215
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIP 76
+EHQV DTL G+A++YGV + I++ N L T+ +F K+L IP
Sbjct: 37 LEHQVQPGDTLQGLALRYGVSMEQIKRANRLYTNDSIFLKKSLYIP 82
>sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Danio rerio GN=lysmd2 PE=2 SV=1
Length = 208
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
IEH+V+ +TL GIA+KYGV + I+++N L ++ +F TL IP+
Sbjct: 65 IEHRVTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIPV 111
>sp|Q3KPL3|LYSM2_XENLA LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus laevis GN=lysmd2 PE=2 SV=2
Length = 206
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGK 80
IEH +S DTL GIA+KYGV + I++ N L + +F K+L IP+ K
Sbjct: 59 IEHCLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIPVISK 108
>sp|Q7Z3D4|LYSM3_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Homo sapiens GN=LYSMD3 PE=1 SV=2
Length = 306
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 21/88 (23%)
Query: 7 SNSDILNSNSKGHFVYEDLGRRG-----------------IIEHQVSKLDTLAGIAIKYG 49
S+SDIL +++ VYE L RG ++ + + DTL IA++Y
Sbjct: 28 SDSDILEEDAE---VYE-LRSRGKEKVRRSTSRDRLDDIIVLTKDIQEGDTLNAIALQYC 83
Query: 50 VDVADIRKLNGLSTDLQMFALKTLQIPL 77
VADI+++N L +D FAL++++IP+
Sbjct: 84 CTVADIKRVNNLISDQDFFALRSIKIPV 111
>sp|Q5M836|LYSM3_RAT LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Rattus norvegicus GN=Lysmd3 PE=2 SV=1
Length = 300
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 30 IIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
I+ + + DTL +A++Y VADI+++N L +D FAL++++IP+
Sbjct: 64 ILTKDIQEGDTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPV 111
>sp|Q5ZKK0|LYSM3_CHICK LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Gallus gallus GN=LYSMD3 PE=2 SV=1
Length = 300
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 39 DTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
DTL IA++Y VADI+++N L D FAL++++IP+
Sbjct: 72 DTLNAIALQYCCSVADIKRVNNLINDQDFFALRSIKIPV 110
>sp|Q99LE3|LYSM3_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Mus musculus GN=Lysmd3 PE=2 SV=1
Length = 305
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 30 IIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
I+ + + DTL +A++Y VADI+++N L +D FAL++++IP+
Sbjct: 64 ILTKDIQEGDTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPV 111
>sp|P0CY38|Y2072_EMENI Uncharacterized protein AN12072 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=AN12072 PE=4 SV=1
Length = 623
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 3 KRKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLS 62
KR+ SN + S + E L + HQV DT+ G+ I+YG A RK+NG
Sbjct: 215 KRRDSNDRTVQSRADTDQDEEAL----VYVHQVQPTDTITGVTIRYGCQAAIFRKVNGFW 270
Query: 63 TDLQMFALKTLQIPL 77
+ A KT+ +P+
Sbjct: 271 PSDSIQARKTVLLPV 285
>sp|Q6IQA2|LYSM3_DANRE LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Danio rerio GN=lysmd3 PE=2 SV=1
Length = 305
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 34 QVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
++ + DTL I+++Y VADI++ N L T+ FAL++L+IP+
Sbjct: 71 EIKEGDTLISISLQYFCTVADIKRANNLLTEQDFFALRSLRIPV 114
>sp|Q8CC84|LYSM4_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Mus musculus GN=Lysmd4 PE=2 SV=1
Length = 293
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 36/52 (69%)
Query: 26 GRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
G +++ ++++ D+L +A++YG VADI+K N + ++ALK+++IP+
Sbjct: 66 GTMVLLQRELAQEDSLNKLALQYGCKVADIKKANNFIREQDLYALKSIKIPV 117
>sp|Q5XG99|LYSM4_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Homo sapiens GN=LYSMD4 PE=2 SV=2
Length = 296
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 37/52 (71%)
Query: 26 GRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
G +++ ++++ D+L +A++YG VADI+K+N + ++ALK+++IP+
Sbjct: 69 GDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSVKIPV 120
>sp|Q9FZ32|FB60_ARATH F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1
SV=1
Length = 221
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
I H++ + D++ +A+KY V V DI++LN + +D +++ L IP+
Sbjct: 74 ISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPI 120
>sp|Q28DG6|LYSM3_XENTR LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Xenopus tropicalis GN=lysmd3 PE=2 SV=1
Length = 262
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 31 IEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
I + + DTL IA++Y VAD+++ N + FAL+T++IP+
Sbjct: 70 ISRDICEGDTLNSIALQYCCTVADLKRANNFLNEQDFFALRTIKIPV 116
>sp|Q5REP3|LYSM4_PONAB LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Pongo abelii GN=LYSMD4 PE=2 SV=1
Length = 296
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 36/52 (69%)
Query: 26 GRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
G +++ ++++ D+L +A++YG VADI+K+N + ++ALK+++ P+
Sbjct: 69 GDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIKSPV 120
>sp|P37710|ALYS_ENTFA Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=EF_0799 PE=3 SV=2
Length = 737
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQI 75
H V D+L G++++YG+ + I++LNGLS D ++ +TL++
Sbjct: 695 HTVKSGDSLWGLSMQYGISIQKIKQLNGLSGD-TIYIGQTLKV 736
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTL 73
+ V DTL IA +YGV VA++R NG+S DL K +
Sbjct: 363 YTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLI 403
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTL 73
+ V DTL IA +YGV VA++R NG+S DL K +
Sbjct: 431 YTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLI 471
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFA 69
+ + DTL IA +YGV VA++R NG+S DL +FA
Sbjct: 499 YTIKSGDTLNKIAAQYGVSVANLRSWNGISGDL-IFA 534
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 4 RKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
+K +NS N+N + G + + DTL I+ ++GV VA++R NG+
Sbjct: 609 KKGANSGSTNTNKP-----TNNGGGATTSYTIKSGDTLNKISAQFGVSVANLRSWNGIKG 663
Query: 64 DLQMFALKTLQI 75
DL +FA +T+ +
Sbjct: 664 DL-IFAGQTIIV 674
>sp|O32062|SAFA_BACSU SpoIVD-associated factor A OS=Bacillus subtilis (strain 168)
GN=safA PE=1 SV=1
Length = 387
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGL--STDLQMFALKTLQIP 76
H V K D+L IA KYGVDV +++KLN + DL M +K +++P
Sbjct: 4 HIVQKGDSLWKIAEKYGVDVEEVKKLNTQLSNPDLIMPGMK-IKVP 48
>sp|Q7A5Y8|LYTN_STAAN Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
N315) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 4 RKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
+K++N + +N G++ + + + I + V K DTL+ IA+KY V++I+ N ++
Sbjct: 152 QKKTNK--VTNNYFGYYSFREAPKTQI--YTVKKGDTLSAIALKYKTTVSNIQNTNNIAN 207
Query: 64 DLQMFALKTLQIPLPGKHPPSP 85
+F + L++P+ P P
Sbjct: 208 PNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q99UM3|LYTN_STAAM Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 4 RKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
+K++N + +N G++ + + + I + V K DTL+ IA+KY V++I+ N ++
Sbjct: 152 QKKTNK--VTNNYFGYYSFREAPKTQI--YTVKKGDTLSAIALKYKTTVSNIQNTNNIAN 207
Query: 64 DLQMFALKTLQIPLPGKHPPSP 85
+F + L++P+ P P
Sbjct: 208 PNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q7A123|LYTN_STAAW Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MW2) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 4 RKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
+K++N + +N G++ + + + I + V K DTL+ IA+KY V++I+ N ++
Sbjct: 152 QKKTNK--VTNNYFGYYSFREAPKTQI--YTVKKGDTLSAIALKYKTTVSNIQNTNNIAN 207
Query: 64 DLQMFALKTLQIPLPGKHPPSP 85
+F + L++P+ P P
Sbjct: 208 PNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q6G9W6|LYTN_STAAS Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MSSA476) GN=lytN PE=3 SV=2
Length = 383
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 4 RKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
+K++N + +N G++ + + + I + V K DTL+ IA+KY V++I+ N ++
Sbjct: 152 QKKTNK--VTNNYFGYYSFREAPKTQI--YTVKKGDTLSAIALKYKTTVSNIQNTNNIAN 207
Query: 64 DLQMFALKTLQIPLPGKHPPSP 85
+F + L++P+ P P
Sbjct: 208 PNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q9ZNI1|LYTN_STAA8 Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
NCTC 8325) GN=lytN PE=2 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 4 RKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
+K++N + +N G++ + + + I + V K DTL+ IA+KY V++I+ N ++
Sbjct: 152 QKKTNK--VTNNYFGYYSFREAPKTQI--YTVKKGDTLSAIALKYKTTVSNIQNTNNIAN 207
Query: 64 DLQMFALKTLQIPLPGKHPPSP 85
+F + L++P+ P P
Sbjct: 208 PNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q5HGI5|LYTN_STAAC Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
COL) GN=lytN PE=3 SV=1
Length = 383
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 4 RKRSNSDILNSNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
+K++N + +N G++ + + + I + V K DTL+ IA+KY V++I+ N ++
Sbjct: 152 QKKTNK--VTNNYFGYYSFREAPKTQI--YTVKKGDTLSAIALKYKTTVSNIQNTNNIAN 207
Query: 64 DLQMFALKTLQIPLPGKHPPSP 85
+F + L++P+ P P
Sbjct: 208 PNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q6GHI8|LYTN_STAAR Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MRSA252) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 14 SNSKGHFVYEDLGRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTL 73
+N G++ + + + I + V K DTL+ IA+KY V++I+ N ++ +F + L
Sbjct: 160 NNYFGYYSFREAPKTQI--YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKL 217
Query: 74 QIPLPGKHPPSP 85
++P+ P P
Sbjct: 218 KVPMTPLVEPKP 229
>sp|Q9NYQ6|CELR1_HUMAN Cadherin EGF LAG seven-pass G-type receptor 1 OS=Homo sapiens
GN=CELSR1 PE=1 SV=1
Length = 3014
Score = 35.4 bits (80), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
Query: 157 VFRKREAQCSEDCPLLKPSRLYKDSQRKTRSLANFLQADNSKEPDNIISSDFRERESESG 216
+FR R+ ED L++ + S R + L N+LQ + S P ++ S G
Sbjct: 1718 MFRTRK----EDSVLMEATSGGPTSFR-LQILNNYLQFEVSHGPSDVESVMLSGLRVTDG 1772
Query: 217 EWKDKLVRRRQKSEDDSSTSVPEMLL----KEDNSNTGG-VPSITGKGLALRPAAASRTA 271
EW L+ + ED + M L ++ ++ GG +P +T + + + A+ + +
Sbjct: 1773 EWHHLLIELKNVKEDSEMKHLVTMTLDYGMDQNKADIGGMLPGLTVRSVVVGGASEDKVS 1832
Query: 272 VGADTQGCDDRISGVRKSSS 291
V +GC + GVR +
Sbjct: 1833 VRRGFRGC---MQGVRMGGT 1849
>sp|Q01836|P60_LISIN Probable endopeptidase p60 OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=iap PE=3 SV=2
Length = 467
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGK 80
H V DT+ +++KYGV V DI N LS+ ++ + L I P K
Sbjct: 201 HNVKSGDTIWALSVKYGVSVQDIMSWNNLSSS-SIYVGQKLAIKQPTK 247
>sp|P0AFT1|YEBA_SHIFL Uncharacterized metalloprotease YebA OS=Shigella flexneri GN=yebA
PE=3 SV=1
Length = 440
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 26 GRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQ 66
G G+ E+ VS DTL+ I +YG+D+ DI +L +L+
Sbjct: 91 GEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELR 131
>sp|P0AFS9|YEBA_ECOLI Uncharacterized metalloprotease YebA OS=Escherichia coli (strain
K12) GN=yebA PE=3 SV=1
Length = 440
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 26 GRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQ 66
G G+ E+ VS DTL+ I +YG+D+ DI +L +L+
Sbjct: 91 GEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELR 131
>sp|P0AFT0|YEBA_ECOL6 Uncharacterized metalloprotease YebA OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=yebA PE=3 SV=1
Length = 440
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 26 GRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQ 66
G G+ E+ VS DTL+ I +YG+D+ DI +L +L+
Sbjct: 91 GEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELR 131
>sp|O23006|LYM2_ARATH LysM domain-containing GPI-anchored protein 2 OS=Arabidopsis
thaliana GN=LYM2 PE=1 SV=1
Length = 350
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77
H V +L IA ++G D + +LNG+ D Q+ A K L +PL
Sbjct: 174 HVVKLGSSLGEIAAQFGTDNTTLAQLNGIIGDSQLLADKPLDVPL 218
>sp|Q49UX4|SLE1_STAS1 N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=sle1 PE=3 SV=1
Length = 327
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLS 62
+ V DTL+GIA KYG I LNGLS
Sbjct: 88 YTVKSGDTLSGIAAKYGTTYQKIMSLNGLS 117
>sp|P21171|P60_LISMO Probable endopeptidase p60 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=iap PE=1 SV=2
Length = 484
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLST 63
H V DT+ +++KYGV V DI N LS+
Sbjct: 203 HAVKSGDTIWALSVKYGVSVQDIMSWNNLSS 233
>sp|P54421|LYTE_BACSU Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis
(strain 168) GN=lytE PE=1 SV=1
Length = 334
Score = 32.0 bits (71), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 33 HQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDL----QMFALK 71
++V D+L I+ KYG+ + +++KLNGL +DL Q+ LK
Sbjct: 88 YKVKSGDSLWKISKKYGMTINELKKLNGLKSDLLRVGQVLKLK 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,540,590
Number of Sequences: 539616
Number of extensions: 5353248
Number of successful extensions: 11957
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 11887
Number of HSP's gapped (non-prelim): 102
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)