Query 038519
Match_columns 324
No_of_seqs 275 out of 1370
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038519.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038519hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 99.6 8.6E-17 2.9E-21 145.7 6.0 113 26-161 5-129 (212)
2 4eby_A Chitin elicitor recepto 99.5 1.3E-14 4.6E-19 131.4 7.3 109 30-160 78-189 (212)
3 2djp_A Hypothetical protein SB 99.5 7.1E-14 2.4E-18 106.5 6.3 54 28-81 13-66 (77)
4 2l9y_A CVNH-LYSM lectin; carbo 99.4 1.1E-13 3.8E-18 121.3 6.3 98 16-128 46-145 (167)
5 1e0g_A Membrane-bound lytic mu 99.4 3E-13 1E-17 93.3 5.3 46 30-77 2-47 (48)
6 2gu1_A Zinc peptidase; alpha/b 99.2 1.3E-12 4.5E-17 125.7 0.9 129 28-160 5-153 (361)
7 4a1k_A Putative L, D-transpept 98.5 1.1E-07 3.6E-12 82.8 5.4 47 30-77 2-48 (165)
8 2gu1_A Zinc peptidase; alpha/b 97.7 2.6E-05 8.9E-10 74.9 4.2 50 30-79 100-154 (361)
9 2djp_A Hypothetical protein SB 97.2 0.0001 3.4E-09 55.6 1.5 49 109-162 17-65 (77)
10 3slu_A M23 peptidase domain pr 96.9 0.0012 4.1E-08 64.3 6.9 52 28-79 12-67 (371)
11 1e0g_A Membrane-bound lytic mu 96.7 0.00019 6.3E-09 48.8 -0.6 43 109-158 4-46 (48)
12 2l9y_A CVNH-LYSM lectin; carbo 96.7 0.00033 1.1E-08 61.1 0.6 49 108-161 63-111 (167)
13 2glo_A Brinker CG9653-PA; prot 63.0 6 0.00021 27.6 3.2 25 35-59 18-46 (59)
14 1tc3_C Protein (TC3 transposas 58.3 10 0.00034 23.8 3.4 24 36-59 19-42 (51)
15 2jn6_A Protein CGL2762, transp 57.4 6.9 0.00024 29.5 2.9 22 38-59 23-44 (97)
16 2elh_A CG11849-PA, LD40883P; s 56.8 8.6 0.00029 28.9 3.3 24 36-59 36-59 (87)
17 2lfc_A Fumarate reductase, fla 56.3 6.1 0.00021 33.1 2.6 28 34-61 91-122 (160)
18 2jrt_A Uncharacterized protein 53.6 9.6 0.00033 30.1 3.2 30 32-61 43-72 (95)
19 1jko_C HIN recombinase, DNA-in 51.6 8.4 0.00029 24.7 2.2 24 35-58 18-41 (52)
20 4abx_A DNA repair protein RECN 43.4 14 0.00047 31.6 2.8 20 39-58 132-151 (175)
21 2rn7_A IS629 ORFA; helix, all 42.5 9.1 0.00031 29.3 1.4 22 38-59 30-51 (108)
22 4a1k_A Putative L, D-transpept 40.5 6 0.00021 33.8 0.1 41 110-157 5-46 (165)
23 3slu_A M23 peptidase domain pr 38.1 30 0.001 33.4 4.6 46 34-79 113-162 (371)
24 1rr7_A Middle operon regulator 36.8 24 0.00082 29.1 3.2 21 38-58 92-112 (129)
25 2x48_A CAG38821; archeal virus 35.5 34 0.0012 22.7 3.3 24 35-58 28-51 (55)
26 1pdn_C Protein (PRD paired); p 34.4 25 0.00085 26.5 2.8 25 35-59 30-54 (128)
27 1k78_A Paired box protein PAX5 29.7 32 0.0011 27.4 2.8 25 35-59 45-69 (149)
28 1u78_A TC3 transposase, transp 28.2 36 0.0012 26.3 2.8 25 35-59 19-43 (141)
29 2cob_A LCOR protein; MLR2, KIA 25.6 32 0.0011 26.3 1.9 42 35-76 26-69 (70)
30 3qq6_A HTH-type transcriptiona 22.7 39 0.0013 24.3 1.9 22 37-58 52-73 (78)
31 2o8x_A Probable RNA polymerase 22.7 73 0.0025 21.7 3.2 23 36-58 29-51 (70)
32 2p7v_B Sigma-70, RNA polymeras 21.9 82 0.0028 21.9 3.4 23 36-58 23-45 (68)
33 2k9q_A Uncharacterized protein 20.3 71 0.0024 22.4 2.8 24 38-61 44-67 (77)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.65 E-value=8.6e-17 Score=145.72 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=91.1
Q ss_pred CCcceEEEEecCCCcHHHHHHHhCCCH--------HHHHHHc-CCCCCCCCCCCCEEEeCCCCCCCCCCCCCCCcccccc
Q 038519 26 GRRGIIEHQVSKLDTLAGIAIKYGVDV--------ADIRKLN-GLSTDLQMFALKTLQIPLPGKHPPSPCLSNGYETRGQ 96 (324)
Q Consensus 26 ~~~~~~~h~Vq~GDTL~~IA~KYgVsV--------~eI~~~N-~L~~~~~L~~GQ~L~IP~~~~~~~s~~~sngs~~r~~ 96 (324)
+...+..|+|++|||||.||++||+++ ++|+++| +|.+++.|++||.|+||...... . +. .
T Consensus 5 C~~a~~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~-----~-~~--~-- 74 (212)
T 4eby_A 5 CPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQ-----P-GD--F-- 74 (212)
T ss_dssp CSCEEEEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEE-----T-TT--E--
T ss_pred CccceEEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEecccccc-----C-Cc--c--
Confidence 334788999999999999999999999 9999999 89767899999999999753211 0 00 0
Q ss_pred cccccCCCCcccccccccccccccCC-CCCcc--cChhHHHHhhhhCCCCCCCCCCCCCceeEEEecC
Q 038519 97 ANHERTPDHHVQHDLFDSFRSLRLKS-KPQWK--VSPAMNSLQGYYGLKPTGQRPPSEGCEMAVFRKR 161 (324)
Q Consensus 97 ~~~~~ap~~~~~~~vv~sgdSl~~~s-~~~~~--vS~Am~~Lq~wyGL~P~~~~~l~~G~elvv~~k~ 161 (324)
......++|+.||+||.++ . ++. ++ +..|+.||++.| +.+.+|++|.|....
T Consensus 75 -------~~~~~~Y~V~~GDTL~~IA~~-~y~~lvt--~~~L~~~N~~~~---~~l~~Gq~L~IP~~~ 129 (212)
T 4eby_A 75 -------LGHNFSYSVRQEDTYERVAIS-NYANLTT--MESLQARNPFPA---TNIPLSATLNVLVNC 129 (212)
T ss_dssp -------EEEEEEEECCTTCCHHHHHHT-TTTTSSC--HHHHHHHCCSCT---TCCCTTCEEEEEEEC
T ss_pred -------ccCceEEEecCCCcHHHHHHH-hcCCCCC--HHHHHHhcCCCc---ccCCCCCEEEEcCCC
Confidence 0112345679999999999 7 888 99 999999999764 569999999998654
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.52 E-value=1.3e-14 Score=131.35 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=82.0
Q ss_pred eEEEEecCCCcHHHHH-HHhC--CCHHHHHHHcCCCCCCCCCCCCEEEeCCCCCCCCCCCCCCCcccccccccccCCCCc
Q 038519 30 IIEHQVSKLDTLAGIA-IKYG--VDVADIRKLNGLSTDLQMFALKTLQIPLPGKHPPSPCLSNGYETRGQANHERTPDHH 106 (324)
Q Consensus 30 ~~~h~Vq~GDTL~~IA-~KYg--VsV~eI~~~N~L~~~~~L~~GQ~L~IP~~~~~~~s~~~sngs~~r~~~~~~~ap~~~ 106 (324)
...|+|++|||||.|| ++|+ +++++|+++|++. ++.|++||+|.||.....+... .. . ....
T Consensus 78 ~~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~-~~~l~~Gq~L~IP~~~~~~~~~-~~-----~--------~~~~ 142 (212)
T 4eby_A 78 NFSYSVRQEDTYERVAISNYANLTTMESLQARNPFP-ATNIPLSATLNVLVNCSCGDES-VS-----K--------DFGL 142 (212)
T ss_dssp EEEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSC-TTCCCTTCEEEEEEECCCCCTT-TC-----S--------SCCC
T ss_pred ceEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCC-cccCCCCCEEEEcCCCcCCCcc-cc-----c--------CCCC
Confidence 4789999999999999 7999 9999999999964 5789999999999764322110 00 0 0011
Q ss_pred ccccccccccccccCCCCCcccChhHHHHhhhhCCCCCCCCCCCCCceeEEEec
Q 038519 107 VQHDLFDSFRSLRLKSKPQWKVSPAMNSLQGYYGLKPTGQRPPSEGCEMAVFRK 160 (324)
Q Consensus 107 ~~~~vv~sgdSl~~~s~~~~~vS~Am~~Lq~wyGL~P~~~~~l~~G~elvv~~k 160 (324)
...++|+.||+||.+++ ++.++ +..|+.||++.- ..+.+|+ +.|=.+
T Consensus 143 ~~~Y~V~~GDTL~~IA~-~fgvs--v~~L~~~N~~~~---~~~~~g~-l~IP~~ 189 (212)
T 4eby_A 143 FVTYPLRPEDSLSSIAR-SSGVS--ADILQRYNPGVN---FNSGNGI-VYVPGR 189 (212)
T ss_dssp EEEEECCTTCCHHHHHH-HHTSC--HHHHHHHSTTCC---TTSCSSE-EEEECC
T ss_pred eEEEEECCCCcHHHHHH-HHCcC--HHHHHHhcCCCc---cCCCCCE-EEecCC
Confidence 23467799999999999 99999 999999999871 2355564 444333
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=7.1e-14 Score=106.46 Aligned_cols=54 Identities=43% Similarity=0.618 Sum_probs=49.5
Q ss_pred cceEEEEecCCCcHHHHHHHhCCCHHHHHHHcCCCCCCCCCCCCEEEeCCCCCC
Q 038519 28 RGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGKH 81 (324)
Q Consensus 28 ~~~~~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~~~~~L~~GQ~L~IP~~~~~ 81 (324)
..+..|+|++|||||.||++|++++++|+++|++..++.|++||+|+||.....
T Consensus 13 ~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~~~ 66 (77)
T 2djp_A 13 ERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEP 66 (77)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEECCS
T ss_pred CCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCCCC
Confidence 467899999999999999999999999999999987789999999999986543
No 4
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.43 E-value=1.1e-13 Score=121.29 Aligned_cols=98 Identities=21% Similarity=0.281 Sum_probs=70.8
Q ss_pred CccceeeecC--CCcceEEEEecCCCcHHHHHHHhCCCHHHHHHHcCCCCCCCCCCCCEEEeCCCCCCCCCCCCCCCccc
Q 038519 16 SKGHFVYEDL--GRRGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPLPGKHPPSPCLSNGYET 93 (324)
Q Consensus 16 s~Gsfv~~~~--~~~~~~~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~~~~~L~~GQ~L~IP~~~~~~~s~~~sngs~~ 93 (324)
..|.+.+... .......|+|++|||||.||++|++++.+|+++|+|.+++.|++||+|+||.....+.. ... .+
T Consensus 46 ~~g~~~~~~~~~~~~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~-~~~-~~-- 121 (167)
T 2l9y_A 46 DNGHFRWVSGGGGGGGTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGG-AGN-FW-- 121 (167)
T ss_dssp SSSSEEETTTTCCCCSCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSS-SCC-GG--
T ss_pred CCCcEeeccccCCCCCCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCCCCcccc-ccc-cc--
Confidence 3566655332 12456789999999999999999999999999999999899999999999986533111 000 00
Q ss_pred ccccccccCCCCcccccccccccccccCCCCCccc
Q 038519 94 RGQANHERTPDHHVQHDLFDSFRSLRLKSKPQWKV 128 (324)
Q Consensus 94 r~~~~~~~ap~~~~~~~vv~sgdSl~~~s~~~~~v 128 (324)
......++++.||+||-++. ++.+
T Consensus 122 ----------~~~~~~~~v~~GdtL~aIA~-r~G~ 145 (167)
T 2l9y_A 122 ----------DSARDVRLVDGGKVLEAELR-YSGG 145 (167)
T ss_dssp ----------GGEEEEEEETTTTEEEEEEE-ETTE
T ss_pred ----------cccceEEEeCCcCChHHHHH-HcCC
Confidence 00123456789999998887 5553
No 5
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.39 E-value=3e-13 Score=93.33 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=43.2
Q ss_pred eEEEEecCCCcHHHHHHHhCCCHHHHHHHcCCCCCCCCCCCCEEEeCC
Q 038519 30 IIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77 (324)
Q Consensus 30 ~~~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~~~~~L~~GQ~L~IP~ 77 (324)
+..|+|++|||||.||++||+++++|+++|+ ....|++||.|.||.
T Consensus 2 ~~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~--~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAKRHGVNIKDVMRWNS--DTANLQPGDKLTLFV 47 (48)
T ss_dssp CCEEEECTTCCHHHHHHHHTCCHHHHHHHCS--CGGGCCTTEEEECCC
T ss_pred CEEEEEcCCCcHHHHHHHHCcCHHHHHHhCC--CCCcCCcCCEEEEec
Confidence 5689999999999999999999999999999 567899999999996
No 6
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.22 E-value=1.3e-12 Score=125.69 Aligned_cols=129 Identities=15% Similarity=0.060 Sum_probs=86.3
Q ss_pred cceEEEEecCCCcHHHHHHHhCCCHHHHHHHcCCCC----CCCCCCCCEEEeCCCCCCCCCCC---CCCC---ccccccc
Q 038519 28 RGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLST----DLQMFALKTLQIPLPGKHPPSPC---LSNG---YETRGQA 97 (324)
Q Consensus 28 ~~~~~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~~----~~~L~~GQ~L~IP~~~~~~~s~~---~sng---s~~r~~~ 97 (324)
..|..|+|++|||||.||++|||++++|+++|++.. .+.|++||.|.||.......... .+.. ...+..
T Consensus 5 ~~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~- 83 (361)
T 2gu1_A 5 PKRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTREN- 83 (361)
T ss_dssp --CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECT-
T ss_pred CCceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecC-
Confidence 468999999999999999999999999999999853 36899999999997533210000 0000 000000
Q ss_pred cccc-------CCCCcccccccccccccccCCCCCcccChhHHHHhhhhCCCCCCC---CCCCCCceeEEEec
Q 038519 98 NHER-------TPDHHVQHDLFDSFRSLRLKSKPQWKVSPAMNSLQGYYGLKPTGQ---RPPSEGCEMAVFRK 160 (324)
Q Consensus 98 ~~~~-------ap~~~~~~~vv~sgdSl~~~s~~~~~vS~Am~~Lq~wyGL~P~~~---~~l~~G~elvv~~k 160 (324)
...+ ..........++.++|||.++. ++.++ ...|+.||+|....- ..|++|+++.|+..
T Consensus 84 ~g~f~~~~~~~~~~~~~~~~~v~igdSL~~iA~-~~Gvs--~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 84 DGSFSYDFQEISGEWREILFSGEINGSFSVSAR-RVGLT--SSQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp TSCEEEEEEECCCEEEEEEEEEESSSCHHHHHH-HTTCC--HHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred CCcceeeecccCceEEEEEEEEEECCcHHHHHH-HcCCC--HHHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 0000 0001122334578999999999 99999 999999999874311 35999999988754
No 7
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.49 E-value=1.1e-07 Score=82.78 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=42.8
Q ss_pred eEEEEecCCCcHHHHHHHhCCCHHHHHHHcCCCCCCCCCCCCEEEeCC
Q 038519 30 IIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTDLQMFALKTLQIPL 77 (324)
Q Consensus 30 ~~~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~~~~~L~~GQ~L~IP~ 77 (324)
.++|+|++||||+.||++|++...+|+++|+..+. .|.+|++|.||.
T Consensus 2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~-~l~~g~~i~ip~ 48 (165)
T 4a1k_A 2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSLQA-GLTAGQSIVIPG 48 (165)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGG-CCCTTCEEEETT
T ss_pred CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCC-ccCCCccccCcc
Confidence 57899999999999999999999999999986554 589999999995
No 8
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=97.66 E-value=2.6e-05 Score=74.93 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=43.0
Q ss_pred eEEEEecCCCcHHHHHHHhCCCHHHHHHHcCCCCC-----CCCCCCCEEEeCCCC
Q 038519 30 IIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLSTD-----LQMFALKTLQIPLPG 79 (324)
Q Consensus 30 ~~~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~~~-----~~L~~GQ~L~IP~~~ 79 (324)
...|+|+.|||||.||++||+++++|++||++... ..|++||+|.|+...
T Consensus 100 ~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~~ 154 (361)
T 2gu1_A 100 EILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILVKQ 154 (361)
T ss_dssp EEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEEE
T ss_pred EEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEEEE
Confidence 45789999999999999999999999999998653 469999999998753
No 9
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.19 E-value=0.0001 Score=55.58 Aligned_cols=49 Identities=10% Similarity=-0.005 Sum_probs=42.5
Q ss_pred ccccccccccccCCCCCcccChhHHHHhhhhCCCCCCCCCCCCCceeEEEecCc
Q 038519 109 HDLFDSFRSLRLKSKPQWKVSPAMNSLQGYYGLKPTGQRPPSEGCEMAVFRKRE 162 (324)
Q Consensus 109 ~~vv~sgdSl~~~s~~~~~vS~Am~~Lq~wyGL~P~~~~~l~~G~elvv~~k~~ 162 (324)
.++|+.||+||.++. ++.++ +..|+.||+|... +.+.+|++|.|-....
T Consensus 17 ~y~V~~GDTL~~IA~-~~~~~--~~~l~~~N~l~~~--~~l~~Gq~l~iP~~~~ 65 (77)
T 2djp_A 17 EHQLEPGDTLAGLAL-KYGVT--MEQIKRANRLYTN--DSIFLKKTLYIPILTE 65 (77)
T ss_dssp EECCCTTCCHHHHHH-HHTCC--HHHHHHHHTCCCS--SCGGGSSCEEEEEECC
T ss_pred EEEECCCCcHHHHHH-HHCcC--HHHHHHHcCCCCc--cccCCCCEEEECCCCC
Confidence 456799999999999 99999 9999999999844 6799999999987653
No 10
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=96.95 E-value=0.0012 Score=64.27 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=45.3
Q ss_pred cceEEEEecCCCcHHHHHHHhCCCHHHHHHHcCCC----CCCCCCCCCEEEeCCCC
Q 038519 28 RGIIEHQVSKLDTLAGIAIKYGVDVADIRKLNGLS----TDLQMFALKTLQIPLPG 79 (324)
Q Consensus 28 ~~~~~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~----~~~~L~~GQ~L~IP~~~ 79 (324)
..|..|+|++||||..|-.++|++..+|.+++... ....|++||.|.|....
T Consensus 12 ~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~ 67 (371)
T 3slu_A 12 AYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVGG 67 (371)
T ss_dssp CEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEECT
T ss_pred CceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEECC
Confidence 67999999999999999999999999999998654 34789999999997654
No 11
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=96.73 E-value=0.00019 Score=48.76 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=37.1
Q ss_pred ccccccccccccCCCCCcccChhHHHHhhhhCCCCCCCCCCCCCceeEEE
Q 038519 109 HDLFDSFRSLRLKSKPQWKVSPAMNSLQGYYGLKPTGQRPPSEGCEMAVF 158 (324)
Q Consensus 109 ~~vv~sgdSl~~~s~~~~~vS~Am~~Lq~wyGL~P~~~~~l~~G~elvv~ 158 (324)
.++++.||+||.++. ++.++ +..|+.||+ . ...+.+|++|.|.
T Consensus 4 ~y~V~~GDtl~~Ia~-~~~~~--~~~l~~~N~-~---~~~l~~G~~l~ip 46 (48)
T 1e0g_A 4 TYRVRKGDSLSSIAK-RHGVN--IKDVMRWNS-D---TANLQPGDKLTLF 46 (48)
T ss_dssp EEEECTTCCHHHHHH-HHTCC--HHHHHHHCS-C---GGGCCTTEEEECC
T ss_pred EEEEcCCCcHHHHHH-HHCcC--HHHHHHhCC-C---CCcCCcCCEEEEe
Confidence 456799999999999 99999 999999999 3 2569999999875
No 12
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=96.69 E-value=0.00033 Score=61.08 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=43.6
Q ss_pred cccccccccccccCCCCCcccChhHHHHhhhhCCCCCCCCCCCCCceeEEEecC
Q 038519 108 QHDLFDSFRSLRLKSKPQWKVSPAMNSLQGYYGLKPTGQRPPSEGCEMAVFRKR 161 (324)
Q Consensus 108 ~~~vv~sgdSl~~~s~~~~~vS~Am~~Lq~wyGL~P~~~~~l~~G~elvv~~k~ 161 (324)
..++|+.||+||.|+. ++.++ +..|+.||+|... +.+.+||+|.|...+
T Consensus 63 ~~y~V~~GDTL~~IA~-~~~~~--~~~l~~~N~~~~~--~~i~~Gq~L~ip~~~ 111 (167)
T 2l9y_A 63 ATVTVQQGDTLRDIGR-RFDCD--FHEIARRNNIQNE--DLIYPGQVLQVPTKG 111 (167)
T ss_dssp EEEEECTTCCHHHHHH-HTTCC--HHHHHHHHTCCGG--GCCCTTEEEEESCCC
T ss_pred ceEEECCCCcHHHHHH-HcCCC--HHHHHHHcCCCCc--ccccCCCEEEEcCCC
Confidence 4567799999999999 99999 9999999999955 789999999998654
No 13
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=63.03 E-value=6 Score=27.55 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.8
Q ss_pred ecCCCc----HHHHHHHhCCCHHHHHHHc
Q 038519 35 VSKLDT----LAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 35 Vq~GDT----L~~IA~KYgVsV~eI~~~N 59 (324)
+..|.+ +..||++|||+...|.+|=
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 356778 9999999999999999984
No 14
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=58.29 E-value=10 Score=23.81 Aligned_cols=24 Identities=17% Similarity=-0.075 Sum_probs=21.6
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHc
Q 038519 36 SKLDTLAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 36 q~GDTL~~IA~KYgVsV~eI~~~N 59 (324)
..|-|...||+.+||+...|.++=
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 578899999999999999998874
No 15
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=57.38 E-value=6.9 Score=29.50 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=20.6
Q ss_pred CCcHHHHHHHhCCCHHHHHHHc
Q 038519 38 LDTLAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 38 GDTL~~IA~KYgVsV~eI~~~N 59 (324)
|-|+..||++|||+...|.+|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 8899999999999999999884
No 16
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=56.75 E-value=8.6 Score=28.87 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.7
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHHc
Q 038519 36 SKLDTLAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 36 q~GDTL~~IA~KYgVsV~eI~~~N 59 (324)
..|.++..||++|||+...|.+|=
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999998873
No 17
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=56.32 E-value=6.1 Score=33.15 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=22.8
Q ss_pred EecCCCcHHHHHHHhCCCHH----HHHHHcCC
Q 038519 34 QVSKLDTLAGIAIKYGVDVA----DIRKLNGL 61 (324)
Q Consensus 34 ~Vq~GDTL~~IA~KYgVsV~----eI~~~N~L 61 (324)
.|.++|||.++|++.||+.+ .|.++|.+
T Consensus 91 ~~~kadTleeLA~~~gid~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVVDELVQTVKNYQGY 122 (160)
T ss_dssp CSEECSSHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35688999999999999976 55678854
No 18
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=53.59 E-value=9.6 Score=30.13 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=25.1
Q ss_pred EEEecCCCcHHHHHHHhCCCHHHHHHHcCC
Q 038519 32 EHQVSKLDTLAGIAIKYGVDVADIRKLNGL 61 (324)
Q Consensus 32 ~h~Vq~GDTL~~IA~KYgVsV~eI~~~N~L 61 (324)
.+...-+.|+.++|++|+|+.++|.+|-..
T Consensus 43 ~~~~~g~~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 43 KAVIHGLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp HHHHTTSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 345566779999999999999999999754
No 19
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=51.64 E-value=8.4 Score=24.74 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=21.6
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH
Q 038519 35 VSKLDTLAGIAIKYGVDVADIRKL 58 (324)
Q Consensus 35 Vq~GDTL~~IA~KYgVsV~eI~~~ 58 (324)
+..|-|+..||+.+||+...|.++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 457889999999999999999887
No 20
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=43.35 E-value=14 Score=31.56 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.6
Q ss_pred CcHHHHHHHhCCCHHHHHHH
Q 038519 39 DTLAGIAIKYGVDVADIRKL 58 (324)
Q Consensus 39 DTL~~IA~KYgVsV~eI~~~ 58 (324)
+.|..+++|||+++++|..+
T Consensus 132 ~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 132 SALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 46889999999999999865
No 21
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=42.49 E-value=9.1 Score=29.32 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=19.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHc
Q 038519 38 LDTLAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 38 GDTL~~IA~KYgVsV~eI~~~N 59 (324)
|.++..||++|||+...|.+|=
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHH
Confidence 3699999999999999999884
No 22
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=40.46 E-value=6 Score=33.75 Aligned_cols=41 Identities=12% Similarity=0.129 Sum_probs=32.7
Q ss_pred cccccccccccCCCCCcccChhHHHHhhhhC-CCCCCCCCCCCCceeEE
Q 038519 110 DLFDSFRSLRLKSKPQWKVSPAMNSLQGYYG-LKPTGQRPPSEGCEMAV 157 (324)
Q Consensus 110 ~vv~sgdSl~~~s~~~~~vS~Am~~Lq~wyG-L~P~~~~~l~~G~elvv 157 (324)
+.|+.||+|+.+++ ++.++ ...|+..|- +.| .+.+|++++|
T Consensus 5 y~V~~GdtL~~IA~-~f~~g--~~~l~~aNp~vd~----~l~~g~~i~i 46 (165)
T 4a1k_A 5 YQVKQGDTLNSIAA-DFRIS--TAALLQANPSLQA----GLTAGQSIVI 46 (165)
T ss_dssp EECCTTCCHHHHHH-HTTCC--HHHHHHHCGGGGG----CCCTTCEEEE
T ss_pred EEECCCCCHHHHHH-HhCCC--HHHHHHhCccCCC----ccCCCccccC
Confidence 45688999999999 99999 888888883 332 2788999886
No 23
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=38.11 E-value=30 Score=33.40 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=37.4
Q ss_pred EecCCCcHHHHHHHhCCCHHHHHHHcCCCCC----CCCCCCCEEEeCCCC
Q 038519 34 QVSKLDTLAGIAIKYGVDVADIRKLNGLSTD----LQMFALKTLQIPLPG 79 (324)
Q Consensus 34 ~Vq~GDTL~~IA~KYgVsV~eI~~~N~L~~~----~~L~~GQ~L~IP~~~ 79 (324)
.+.-.++||..|.+.|++.+.|.+++.|... ..|++|+.+.|....
T Consensus 113 ~g~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~~~ 162 (371)
T 3slu_A 113 SVVVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYDS 162 (371)
T ss_dssp EEECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEEEE
T ss_pred EEEEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEEEE
Confidence 3445889999999999999999999976433 248999999998754
No 24
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=36.84 E-value=24 Score=29.11 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.4
Q ss_pred CCcHHHHHHHhCCCHHHHHHH
Q 038519 38 LDTLAGIAIKYGVDVADIRKL 58 (324)
Q Consensus 38 GDTL~~IA~KYgVsV~eI~~~ 58 (324)
|.++..+|++||+|...|.+.
T Consensus 92 G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 889999999999999998775
No 25
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=35.50 E-value=34 Score=22.73 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.2
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHH
Q 038519 35 VSKLDTLAGIAIKYGVDVADIRKL 58 (324)
Q Consensus 35 Vq~GDTL~~IA~KYgVsV~eI~~~ 58 (324)
...|-|...||..+||+...+.++
T Consensus 28 ~~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 357899999999999999998875
No 26
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=34.43 E-value=25 Score=26.47 Aligned_cols=25 Identities=12% Similarity=-0.044 Sum_probs=21.9
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHc
Q 038519 35 VSKLDTLAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 35 Vq~GDTL~~IA~KYgVsV~eI~~~N 59 (324)
+..|-++..||+.|||+...|.+|=
T Consensus 30 ~~~g~s~~~ia~~lgis~~Tv~~w~ 54 (128)
T 1pdn_C 30 AADGIRPCVISRQLRVSHGCVSKIL 54 (128)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3589999999999999999887773
No 27
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=29.65 E-value=32 Score=27.45 Aligned_cols=25 Identities=12% Similarity=0.009 Sum_probs=22.2
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHc
Q 038519 35 VSKLDTLAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 35 Vq~GDTL~~IA~KYgVsV~eI~~~N 59 (324)
+..|.++..||+.|||+...|.+|=
T Consensus 45 ~~~G~s~~~iA~~lgis~~TV~rw~ 69 (149)
T 1k78_A 45 AHQGVRPCDISRQLRVSHGCVSKIL 69 (149)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3589999999999999999998874
No 28
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=28.18 E-value=36 Score=26.34 Aligned_cols=25 Identities=16% Similarity=-0.095 Sum_probs=22.4
Q ss_pred ecCCCcHHHHHHHhCCCHHHHHHHc
Q 038519 35 VSKLDTLAGIAIKYGVDVADIRKLN 59 (324)
Q Consensus 35 Vq~GDTL~~IA~KYgVsV~eI~~~N 59 (324)
+..|.+...||+.|||+...|.+|=
T Consensus 19 ~~~G~s~~~ia~~lgis~~Tv~r~~ 43 (141)
T 1u78_A 19 KLLNVSLHEMSRKISRSRHCIRVYL 43 (141)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3689999999999999999998874
No 29
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=25.62 E-value=32 Score=26.25 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=30.1
Q ss_pred ecCC-CcHHHHHHHhCCCHHHHH-HHcCCCCCCCCCCCCEEEeC
Q 038519 35 VSKL-DTLAGIAIKYGVDVADIR-KLNGLSTDLQMFALKTLQIP 76 (324)
Q Consensus 35 Vq~G-DTL~~IA~KYgVsV~eI~-~~N~L~~~~~L~~GQ~L~IP 76 (324)
|+.| =+...-|+.|||+-..|. ++++...-....+...|++|
T Consensus 26 Vr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~~~~~~~~ 69 (70)
T 2cob_A 26 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLM 69 (70)
T ss_dssp HHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCCCSCCCCC
T ss_pred HHcCCccHHHHHHHhCCChHHHHHHHHhhcccccCCcccccCCC
Confidence 7888 599999999999999987 56655443444455555544
No 30
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.71 E-value=39 Score=24.27 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHhCCCHHHHHHH
Q 038519 37 KLDTLAGIAIKYGVDVADIRKL 58 (324)
Q Consensus 37 ~GDTL~~IA~KYgVsV~eI~~~ 58 (324)
.-++|..||..|||++++|...
T Consensus 52 ~~~~l~~ia~~l~v~~~~l~~~ 73 (78)
T 3qq6_A 52 SIQFLEKVSAVLDVSVHTLLDE 73 (78)
T ss_dssp BHHHHHHHHHHHTCCHHHHHHS
T ss_pred CHHHHHHHHHHHCcCHHHHhCC
Confidence 3478999999999999999764
No 31
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.67 E-value=73 Score=21.67 Aligned_cols=23 Identities=26% Similarity=0.095 Sum_probs=19.9
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 038519 36 SKLDTLAGIAIKYGVDVADIRKL 58 (324)
Q Consensus 36 q~GDTL~~IA~KYgVsV~eI~~~ 58 (324)
-.|-|...||..+|++...+...
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46899999999999999988753
No 32
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.89 E-value=82 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.1
Q ss_pred cCCCcHHHHHHHhCCCHHHHHHH
Q 038519 36 SKLDTLAGIAIKYGVDVADIRKL 58 (324)
Q Consensus 36 q~GDTL~~IA~KYgVsV~eI~~~ 58 (324)
..|-|+.+||..+|++...++..
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHH
Confidence 36899999999999999988764
No 33
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.32 E-value=71 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=19.7
Q ss_pred CCcHHHHHHHhCCCHHHHHHHcCC
Q 038519 38 LDTLAGIAIKYGVDVADIRKLNGL 61 (324)
Q Consensus 38 GDTL~~IA~KYgVsV~eI~~~N~L 61 (324)
-++|..||..|||++++|.....-
T Consensus 44 ~~~l~~ia~~l~v~~~~l~~~~~~ 67 (77)
T 2k9q_A 44 VVKYIAFLRSKGVDLNALFDRIIV 67 (77)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcCHHHHhCcccc
Confidence 367889999999999999887654
Done!