BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038520
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/299 (52%), Positives = 203/299 (67%), Gaps = 10/299 (3%)
Query: 28 LQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGDF 85
L N Y CP A + I S V +AV +++RM ASLLRLHFHDCF GCDASVLLDDT +F
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 86 VGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM 145
GEKTA PN NS+RGFEVID IKS +ES+CP VSCADILAVAARDSVV G SW V +
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 146 GRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSS 205
GRRDS +A+ ++A + +PAP +L+ L++ F N G T +++V LSGAHT+G+A+C F +
Sbjct: 122 GRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFRT 181
Query: 206 RLQSSSNTNGPDNNPDFLQSLQQLCS--GSDIDALAQLDLVTPATFDNQYYINLLSGEGL 263
R+ + SN +P + +SLQ C G D + L+ D+ TP FDN YYINL + +GL
Sbjct: 182 RIYNESNI-----DPTYAKSLQANCPSVGGDTN-LSPFDVTTPNKFDNAYYINLRNKKGL 235
Query: 264 LPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRNCRVVN 322
L SDQ L + T + +Y+ + + F DF +M+KMG+L P +G GQIR NCR N
Sbjct: 236 LHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 297 bits (760), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 201/303 (66%), Gaps = 7/303 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y+ +CP A AI+ S ++ A+ D+R+ ASL+RLHFHDCF GCDAS+LLDDTG
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
EK A PN+NS RGF V+D IK+ LE+ CP VSC+D+LA+A+ SV L GPSW V
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFS 204
+GRRDS +AN A A + IP+P SL+++ KF VGL D+VALSGAHT G+ARC F+
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 205 SRLQSSSNTNGPDN--NPDFLQSLQQLC-SGSDIDALAQLDLVTPATFDNQYYINLLSGE 261
+RL + S T PD N L +LQQLC + LDL TP FDN Y+ NL S +
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSND 241
Query: 262 GLLPSDQILVSQ--DQTREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRNCR 319
GLL SDQ L S T I+ S+A + ++FF+ F SM+ MG++ P +G++G+IR +C+
Sbjct: 242 GLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCK 301
Query: 320 VVN 322
VN
Sbjct: 302 KVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 148/310 (47%), Positives = 198/310 (63%), Gaps = 17/310 (5%)
Query: 25 GFELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDT 82
G L Y +CP A A++ + V+ A DSR+ ASL+RLHFHDCF GCDAS+LLD++
Sbjct: 1 GGSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNS 60
Query: 83 GDFVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWE 142
G + EK A PN NS RGF V+D IK+ LE+ CP VSC D+LA+A++ SV L+ GPSW
Sbjct: 61 GSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWT 120
Query: 143 VPMGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLT 202
V +GRRD+ +AN+A A + IP+P L+++ +KF VGL D+VALSGAHT G+A C
Sbjct: 121 VDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGV 180
Query: 203 FSSRLQSSSNTNGPD--NNPDFLQSLQQLC------SGSDIDALAQLDLVTPATFDNQYY 254
FS+RL + S PD N L +LQ+LC SGS LDL TP FDN Y+
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGS-----TNLDLSTPDAFDNNYF 235
Query: 255 INLLSGEGLLPSDQILVSQ--DQTREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDG 312
NL S GLL SDQ L S T I+ S+A + ++FF+ F SM+ MG++ P +G+ G
Sbjct: 236 TNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSG 295
Query: 313 QIRRNCRVVN 322
+IR +C+ N
Sbjct: 296 EIRLDCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 200/305 (65%), Gaps = 15/305 (4%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L +IY SCP I+ V A+ + RMAASL+RLHFHDCF GCDAS+LLD
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
EK A PN+NS RGFEVID IK+ +E+ CP VSCADIL +AARDSVVL+ GP W V
Sbjct: 61 ---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFS 204
+GR+D AN+ +A N +P+P L ++AKF V L + D+VALSGAHT G+A+C FS
Sbjct: 118 LGRKDGLVANQNSANN-LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFS 176
Query: 205 SRLQSSSNTNGPDNNPD--FLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSGE 261
+RL + + PD + L +LQ +C G + + A LD T TFDN Y+ NLL G+
Sbjct: 177 NRLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGK 236
Query: 262 GLLPSDQILVSQD----QTREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
GLL SDQIL S D T++++ +Y+ S+FF DF +M++MG++ ++G G++R N
Sbjct: 237 GLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNI--SNGASGEVRTN 294
Query: 318 CRVVN 322
CRV+N
Sbjct: 295 CRVIN 299
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 273 bits (699), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 190/305 (62%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 318 CRVVN 322
CRVVN
Sbjct: 302 CRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 273 bits (698), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 190/305 (62%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL +DL TP FDN+YY+NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 318 CRVVN 322
CRVVN
Sbjct: 302 CRVVN 306
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 189/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 318 CRVVN 322
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 189/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 318 CRVVN 322
CRVVN
Sbjct: 301 CRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 189/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 318 CRVVN 322
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/305 (48%), Positives = 189/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 318 CRVVN 322
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 189/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG H+ GK +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 318 CRVVN 322
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 188/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +P P +L L F+NVGL D+VALSG HT GK +C
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 318 CRVVN 322
CRVVN
Sbjct: 302 CRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 270 bits (691), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 188/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VAL G HT GK +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 318 CRVVN 322
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 270 bits (691), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 188/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHFHDCF GCDAS+LLD+T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +P P +L L F+NVGL D+VALSG HT GK +C
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 318 CRVVN 322
CRVVN
Sbjct: 302 CRVVN 306
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 269 bits (687), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 188/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+LRLHF DCF GCDAS+LLD+T
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 301
Query: 318 CRVVN 322
CRVVN
Sbjct: 302 CRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 266 bits (679), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/305 (48%), Positives = 187/305 (61%), Gaps = 9/305 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y++SCP I+ + N + D R+AAS+L LHF DCF GCDAS+LLD+T
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
F EK A N NS RGF VID +K+ +ES CP TVSCAD+L +AA+ SV L GPSW VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTL-QDMVALSGAHTMGKARCLTF 203
+GRRDS A A +PAP +L L F+NVGL D+VALSG HT GK +C
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 204 SSRLQSSSNTNGPDN--NPDFLQSLQQLCS-GSDIDALAQLDLVTPATFDNQYYINLLSG 260
RL + SNT PD N +LQ+L+ LC ++ AL DL TP FDN+YY+NL
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 261 EGLLPSDQILVSQDQ---TREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRN 317
+GL+ SDQ L S T ++ S+A T FF F +M +MG++ P +G GQIR N
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLN 300
Query: 318 CRVVN 322
CRVVN
Sbjct: 301 CRVVN 305
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/303 (47%), Positives = 195/303 (64%), Gaps = 7/303 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+L Y ++CP I+F + +A D R+ ASL+RLHFHDCF GCD SVLL++T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
E+ A PN+NS+RG +V++ IK+ +E+ CP+TVSCADILA+AA + VL GP W VP
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFS 204
+GRRDS +AN+ A +PAP +L L A F GL D+V LSG HT G+ARC TF
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180
Query: 205 SRLQSSSNTNGPDN--NPDFLQSLQQLC-SGSDIDALAQLDLVTPATFDNQYYINLLSGE 261
+RL + SNT PD N +L+ L+ C + D L LDL TP FDN+YY NLL
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240
Query: 262 GLLPSDQILVSQD--QTREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRNCR 319
GLL SDQ L S T I+NS++ + + FF +F++SM+KMG++G +G++G+IR C
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCN 300
Query: 320 VVN 322
VN
Sbjct: 301 FVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 237 bits (605), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 188/301 (62%), Gaps = 10/301 (3%)
Query: 28 LQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGDF 85
L F+ Y +CP AE+I+ +V+ AV +D +AA LLRLHFHDCF GCDASVLLD +
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 86 VGEKTAPPNLNSLR--GFEVIDAIKSDLESVCP-ETVSCADILAVAARDSVVLTAGPSWE 142
GE+ APPNL +LR F+ ++ I+ LE C VSC+DILA+AARDSVV++ GP +
Sbjct: 69 PGEQQAPPNL-TLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYR 127
Query: 143 VPMGRRDSFS-ANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCL 201
VP+GRRDS S A+ + +P P+S++ L+A +GL D+V +SG HT+G A C
Sbjct: 128 VPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCS 187
Query: 202 TFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSGE 261
+F RL + P +P FL L++ C D LD+ TP FDN+YYI+L++ E
Sbjct: 188 SFEDRLFPRPD---PTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDNKYYIDLVNRE 244
Query: 262 GLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRNCRVV 321
GL SDQ L + TR I+ +A+ FFE F +S+ KMG + + + G++RRNC V
Sbjct: 245 GLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNCSVR 304
Query: 322 N 322
N
Sbjct: 305 N 305
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 179/303 (59%), Gaps = 7/303 (2%)
Query: 27 ELQFNIYNDSCPEAEAIIFSWVENAVMEDSRMAASLLRLHFHDCF--GCDASVLLDDTGD 84
+LQ YN SCP AE+++ V A +S +A L+R+HFHDCF GCDASVLLD T +
Sbjct: 1 DLQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTAN 60
Query: 85 FVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVP 144
EK A PN SLRGFEVI A KS +E+ CP+TVSCADILA AARDS L +++VP
Sbjct: 61 NTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVP 120
Query: 145 MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFS 204
GRRD + + A IP+P + L+ F N LT +MV LSGAH++G A C +F+
Sbjct: 121 SGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFT 180
Query: 205 SRLQSSSNTNG--PDNNPDFLQSLQQLCSGSDID---ALAQLDLVTPATFDNQYYINLLS 259
+RL + ++ +G P +P + L+ C + LD++TP+ DN YY +
Sbjct: 181 NRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL 240
Query: 260 GEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLGPASGNDGQIRRNCR 319
GLL SDQ LV++ + + A + + + F +M+KMG + +G G+IR NC
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 320 VVN 322
VVN
Sbjct: 301 VVN 303
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 109/264 (41%), Gaps = 49/264 (18%)
Query: 50 NAVMEDSRMAASLLRLHFHDCFGCDASVLLDDTGDFVGEKTAPPNL--NSLRGFEVIDAI 107
+ + R A +LRL +H D TG G P L ++ G ++ +
Sbjct: 35 RGFIAEKRCAPLMLRLAWHSAGTFDKGT---KTGGPFGTIKHPAELAHSANNGLDIAVRL 91
Query: 108 KSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAP 165
L++ P +S AD +A +V +T GP EVP GR D
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKG 148
Query: 166 NSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQS 225
+ L D+ K +GLT QD+VALSG HT+G A + +S GP +
Sbjct: 149 SDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH--------KEASGFEGPWTS------ 192
Query: 226 LQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIIN 281
P FDN Y+ LLSG EGL LPSD+ L+S R +++
Sbjct: 193 -------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD 233
Query: 282 SYAEDTSVFFEDFKISMLKMGSLG 305
YA D FF D+ + K+ LG
Sbjct: 234 KYAADEDAFFADYAEAHQKLSELG 257
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 111/270 (41%), Gaps = 49/270 (18%)
Query: 50 NAVMEDSRMAASLLRLHFHDCFGCDASVLLDDTGDFVGEKTAPPNL--NSLRGFEVIDAI 107
+ + R A +LRL +H D TG G P L ++ G ++ +
Sbjct: 35 RGFIAEKRCAPLMLRLAWHSAGTFDKGT---KTGGPFGTIKHPAELAHSANNGLDIAVRL 91
Query: 108 KSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAP 165
L++ P +S AD +A +V +T GP EVP GR D
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKG 148
Query: 166 NSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQS 225
+ L D+ K +GLT QD+VALSG HT+G A + S GP +
Sbjct: 149 SDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS------ 192
Query: 226 LQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIIN 281
P FDN Y+ LLSG EGL LPSD+ L+S R +++
Sbjct: 193 -------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD 233
Query: 282 SYAEDTSVFFEDFKISMLKMGSLGPASGND 311
YA D FF D+ + K+ LG A ++
Sbjct: 234 KYAADEDAFFADYAEAHQKLSELGFADAHE 263
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 108/264 (40%), Gaps = 49/264 (18%)
Query: 50 NAVMEDSRMAASLLRLHFHDCFGCDASVLLDDTGDFVGEKTAPPNL--NSLRGFEVIDAI 107
+ + R A +LRL +H D TG G P L ++ G ++ +
Sbjct: 23 RGFIAEKRCAPLMLRLAWHSAGTFDKGT---KTGGPFGTIKHPAELAHSANNGLDIAVRL 79
Query: 108 KSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAP 165
L++ P +S AD +A +V +T GP EVP GR D
Sbjct: 80 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKG 136
Query: 166 NSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQS 225
+ L D+ K +GLT QD+VALSG HT+G A + S GP +
Sbjct: 137 SDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS------ 180
Query: 226 LQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIIN 281
P FDN Y+ LLSG EGL LPSD+ L+S R +++
Sbjct: 181 -------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD 221
Query: 282 SYAEDTSVFFEDFKISMLKMGSLG 305
YA D FF D+ + K+ LG
Sbjct: 222 KYAADEDAFFADYAEAHQKLSELG 245
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 108/264 (40%), Gaps = 49/264 (18%)
Query: 50 NAVMEDSRMAASLLRLHFHDCFGCDASVLLDDTGDFVGEKTAPPNL--NSLRGFEVIDAI 107
+ + R A +LRL +H D TG G P L ++ G ++ +
Sbjct: 35 RGFIAEKRCAPLMLRLAWHSAGTFDKGT---KTGGPFGTIKHPAELAHSANNGLDIAVRL 91
Query: 108 KSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAP 165
L++ P +S AD +A +V +T GP EVP GR D
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKG 148
Query: 166 NSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQS 225
+ L D+ K +GLT QD+VALSG HT+G A + S GP +
Sbjct: 149 SDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS------ 192
Query: 226 LQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIIN 281
P FDN Y+ LLSG EGL LPSD+ L+S R +++
Sbjct: 193 -------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD 233
Query: 282 SYAEDTSVFFEDFKISMLKMGSLG 305
YA D FF D+ + K+ LG
Sbjct: 234 KYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 108/264 (40%), Gaps = 49/264 (18%)
Query: 50 NAVMEDSRMAASLLRLHFHDCFGCDASVLLDDTGDFVGEKTAPPNL--NSLRGFEVIDAI 107
+ + R A +L+L +H D TG G P L ++ G ++ +
Sbjct: 23 RGFIAEKRCAPLMLKLAWHSAGTFDKGT---KTGGPFGTIKHPAELAHSANNGLDIAVRL 79
Query: 108 KSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAP 165
L++ P +S AD +A +V +T GP EVP GR D
Sbjct: 80 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKG 136
Query: 166 NSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQS 225
+ L D+ K +GLT QD+VALSG HT+G A + S GP +
Sbjct: 137 SDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS------ 180
Query: 226 LQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIIN 281
P FDN Y+ LLSG EGL LPSD+ L+S R +++
Sbjct: 181 -------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD 221
Query: 282 SYAEDTSVFFEDFKISMLKMGSLG 305
YA D FF D+ + K+ LG
Sbjct: 222 KYAADEDAFFADYAEAHQKLSELG 245
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 83/193 (43%), Gaps = 43/193 (22%)
Query: 119 VSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAPNSSLADLVAKF 176
VS AD +A +V +T GP EVP GR D + L D+ K
Sbjct: 90 VSYADFYQLAGVVAVEITGGP--EVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK- 146
Query: 177 QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDID 236
+GL+ QD+VALSG HT+G A + S GP +
Sbjct: 147 -AMGLSDQDIVALSGGHTIGAAH--------KERSGFEGPWTS----------------- 180
Query: 237 ALAQLDLVTPATFDNQYYINLLSGE--GL--LPSDQILVSQDQTREIINSYAEDTSVFFE 292
P FDN Y+ LL+GE GL LPSD+ L++ R ++ YA D VFF
Sbjct: 181 --------NPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFA 232
Query: 293 DFKISMLKMGSLG 305
D+ + LK+ LG
Sbjct: 233 DYAEAHLKLSELG 245
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 107/264 (40%), Gaps = 49/264 (18%)
Query: 50 NAVMEDSRMAASLLRLHFHDCFGCDASVLLDDTGDFVGEKTAPPNL--NSLRGFEVIDAI 107
+ + R A +LRL H D TG G P L ++ G ++ +
Sbjct: 35 RGFIAEKRCAPLMLRLAAHSAGTFDKGT---KTGGPFGTIKHPAELAHSANNGLDIAVRL 91
Query: 108 KSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAP 165
L++ P +S AD +A +V +T GP EVP GR D
Sbjct: 92 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKG 148
Query: 166 NSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQS 225
+ L D+ K +GLT QD+VALSG HT+G A + S GP +
Sbjct: 149 SDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS------ 192
Query: 226 LQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIIN 281
P FDN Y+ LLSG EGL LPSD+ L+S R +++
Sbjct: 193 -------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD 233
Query: 282 SYAEDTSVFFEDFKISMLKMGSLG 305
YA D FF D+ + K+ LG
Sbjct: 234 KYAADEDAFFADYAEAHQKLSELG 257
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 107/264 (40%), Gaps = 49/264 (18%)
Query: 50 NAVMEDSRMAASLLRLHFHDCFGCDASVLLDDTGDFVGEKTAPPNL--NSLRGFEVIDAI 107
+ + R A +L L +H D TG G P L ++ G ++ +
Sbjct: 23 RGFIAEKRCAPLMLALAWHSAGTFDKGT---KTGGPFGTIKHPAELAHSANNGLDIAVRL 79
Query: 108 KSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAP 165
L++ P +S AD +A +V +T GP EVP GR D
Sbjct: 80 LEPLKAEFP-ILSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKG 136
Query: 166 NSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQS 225
+ L D+ K +GLT QD+VALSG HT+G A + S GP +
Sbjct: 137 SDHLRDVFGK--AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS------ 180
Query: 226 LQQLCSGSDIDALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIIN 281
P FDN Y+ LLSG EGL LPSD+ L+S R +++
Sbjct: 181 -------------------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVD 221
Query: 282 SYAEDTSVFFEDFKISMLKMGSLG 305
YA D FF D+ + K+ LG
Sbjct: 222 KYAADEDAFFADYAEAHQKLSELG 245
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 82/193 (42%), Gaps = 43/193 (22%)
Query: 119 VSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAPNSSLADLVAKF 176
+S AD +A +V +T GP EVP GR D + L D+ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK- 158
Query: 177 QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDID 236
+GLT QD+VALSG HT+G A + S GP +
Sbjct: 159 -AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS----------------- 192
Query: 237 ALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIINSYAEDTSVFFE 292
P FDN Y+ LLSG EGL LPSD+ L+S R +++ YA D FF
Sbjct: 193 --------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 293 DFKISMLKMGSLG 305
D+ + K+ LG
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 82/193 (42%), Gaps = 43/193 (22%)
Query: 119 VSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAPNSSLADLVAKF 176
+S AD +A +V +T GP EVP GR D + L D+ K
Sbjct: 90 LSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK- 146
Query: 177 QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDID 236
+GLT QD+VALSG HT+G A + S GP +
Sbjct: 147 -AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS----------------- 180
Query: 237 ALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIINSYAEDTSVFFE 292
P FDN Y+ LLSG EGL LPSD+ L+S R +++ YA D FF
Sbjct: 181 --------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 232
Query: 293 DFKISMLKMGSLG 305
D+ + K+ LG
Sbjct: 233 DYAEAHQKLSELG 245
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 79/191 (41%), Gaps = 39/191 (20%)
Query: 119 VSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVAKFQN 178
+S AD +A +V +T GP GR D + L D+ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK--A 159
Query: 179 VGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDIDAL 238
+GLT QD+VALSG HT+G A + S GP +
Sbjct: 160 MGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS------------------- 192
Query: 239 AQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIINSYAEDTSVFFEDF 294
P FDN Y+ LLSG EGL LPSD+ L+S R +++ YA D FF D+
Sbjct: 193 ------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADY 246
Query: 295 KISMLKMGSLG 305
+ K+ LG
Sbjct: 247 AEAHQKLSELG 257
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 82/193 (42%), Gaps = 43/193 (22%)
Query: 119 VSCADILAVAARDSVVLTAGPSWEVPM--GRRDSFSANKAAATNGIPAPNSSLADLVAKF 176
+S AD +A +V +T GP EVP GR D + L D+ K
Sbjct: 102 LSYADFYQLAGVVAVEVTGGP--EVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGK- 158
Query: 177 QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDID 236
+GLT QD+VALSG HT+G A + S GP +
Sbjct: 159 -AMGLTDQDIVALSGGHTIGAAH--------KERSGFEGPWTS----------------- 192
Query: 237 ALAQLDLVTPATFDNQYYINLLSG--EGL--LPSDQILVSQDQTREIINSYAEDTSVFFE 292
P FDN Y+ LLSG EGL LPSD+ L+S R +++ YA D FF
Sbjct: 193 --------NPLIFDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFA 244
Query: 293 DFKISMLKMGSLG 305
D+ + K+ LG
Sbjct: 245 DYAEAHQKLSELG 257
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 48/275 (17%)
Query: 48 VENAVMEDSRMAASLLRLHFH-----DCFGCDASVLLDDTGDFVGEKTAPPNLNSLR--- 99
+E+ + E + SL+RL +H DCF D S PN S+R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDCFKKDGS----------------PNSASMRFKP 59
Query: 100 -----GFEVIDAIKSDLESVCPE--TVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFS 152
G + +D + LE++ + +S AD+ +AA ++ GP+ GR D+
Sbjct: 60 ECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKD 119
Query: 153 ANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSN 212
+ +P + + + + F+ +G Q+ VAL GAHT G+ + +
Sbjct: 120 GSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHD 179
Query: 213 TNGPDNNPDFLQSL--QQLCSGSDIDALAQLDLVTPATFDNQYYINLLSGEGLLPSDQIL 270
NG DN+ F L + ++ + +D T +LPSD L
Sbjct: 180 KNGFDNS--FFTQLLDEDWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCL 224
Query: 271 VSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLG 305
+ R+ + YA+D F +DF + K+ LG
Sbjct: 225 LLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELG 259
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 48/275 (17%)
Query: 48 VENAVMEDSRMAASLLRLHFH-----DCFGCDASVLLDDTGDFVGEKTAPPNLNSLR--- 99
+E+ + E + SL+RL +H DCF D S PN S+R
Sbjct: 16 IEDMISEKLELGPSLIRLAWHEAASYDCFKKDGS----------------PNSASMRFKP 59
Query: 100 -----GFEVIDAIKSDLESVCPE--TVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFS 152
G + +D + LE++ + +S AD+ +AA ++ GP+ GR D+
Sbjct: 60 ECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKD 119
Query: 153 ANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSN 212
+ +P + + + + F+ +G Q+ VAL GAHT G+ + +
Sbjct: 120 GSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHD 179
Query: 213 TNGPDNNPDFLQSL--QQLCSGSDIDALAQLDLVTPATFDNQYYINLLSGEGLLPSDQIL 270
NG DN+ F L + ++ + +D T +LPSD L
Sbjct: 180 KNGFDNS--FFTQLLDEDWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCL 224
Query: 271 VSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLG 305
+ R+ + YA+D F +DF + K+ LG
Sbjct: 225 LLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELG 259
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/275 (23%), Positives = 111/275 (40%), Gaps = 48/275 (17%)
Query: 48 VENAVMEDSRMAASLLRLHFH-----DCFGCDASVLLDDTGDFVGEKTAPPNLNSLR--- 99
+E+ + E + SL+RL +H DCF D S PN S+R
Sbjct: 15 IEDMISEKLELGPSLIRLAWHEAASYDCFKKDGS----------------PNSASMRFKP 58
Query: 100 -----GFEVIDAIKSDLESVCPE--TVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFS 152
G + +D + LE++ + +S AD+ +AA ++ GP+ GR D+
Sbjct: 59 ECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKD 118
Query: 153 ANKAAATNGIPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSN 212
+ +P + + + + F+ +G Q+ VAL GAHT G+ + +
Sbjct: 119 GSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHD 178
Query: 213 TNGPDNNPDFLQSL--QQLCSGSDIDALAQLDLVTPATFDNQYYINLLSGEGLLPSDQIL 270
NG DN+ F L + ++ + +D T +LPSD L
Sbjct: 179 KNGFDNS--FFTQLLDEDWVLNPKVEQMQLMDRATTKLM-------------MLPSDVCL 223
Query: 271 VSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLG 305
+ R+ + YA+D F +DF + K+ LG
Sbjct: 224 LLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELG 258
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 95/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAHT+GK +S GP
Sbjct: 156 TFFQRLNMNDREVVALMGAHTLGKTHL--------KNSGYEGPWT--------------- 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
P FDN +Y+NLL SG +LP+D L+
Sbjct: 193 ----------ANPNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 119 VSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATN-----GIPAPNSSLADLV 173
V+ AD+ +A+ ++ GP + GR D + G P+P L D+
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDV- 145
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARC-LTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSG 232
F +GL +++VALSGAHT+G++R + + ++ +GP + Q L
Sbjct: 146 --FYRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWL--- 200
Query: 233 SDIDALAQLDLVTPATFDNQYYINLLSGEG----LLPSDQILVSQDQTREIINSYAEDTS 288
FDN Y+ ++ +LP+D L + YA D
Sbjct: 201 ---------------KFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPE 245
Query: 289 VFFEDFKISMLKMGSL----GPASG 309
FF+D+ + K+ +L GPA G
Sbjct: 246 AFFKDYAEAHAKLSNLGAKFGPAEG 270
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAHT+GK +S GP
Sbjct: 156 TFFQRLNMNDREVVALMGAHTLGKTHL--------KNSGYEGP----------------- 190
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
DA T FDN +Y+NLL SG +LP+D L+
Sbjct: 191 -WDA-------TNNVFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAHT+GK ++N N
Sbjct: 156 TFFQRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNN------------------- 196
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
FDN +Y+NLL SG +LP+D L+
Sbjct: 197 --------------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VALSGAHT+GK ++N N
Sbjct: 156 TFFQRLNMNDREVVALSGAHTLGKTHLKNSGYEGPWTANNN------------------- 196
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
FDN +Y+NLL SG LP+D L+
Sbjct: 197 --------------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 72/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 44 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 98
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 99 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 153
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK + L++S G NN
Sbjct: 154 TFFQRLNMNDREVVALMGAHALGK-------THLKNSGYEGGGANN-------------- 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 193 --------------VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 238
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 239 KYLSIVKEYANDQDKFFKDFSKAFEKL 265
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 72/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 49 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 103
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 104 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 158
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK + L++S G NN
Sbjct: 159 TFFQRLNMNDREVVALMGAHALGK-------THLKNSGYEGGGANN-------------- 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 198 --------------VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 243
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 244 KYLSIVKEYANDQDKFFKDFSKAFEKL 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 98/267 (36%), Gaps = 72/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK + L++S G NN
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGK-------THLKNSGYEGGGANN-------------- 191
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 192 --------------VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 237
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 238 KYLSIVKEYANDQDKFFKDFSKAFEKL 264
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 93/267 (34%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAHT+GK ++N N
Sbjct: 156 TFFQRLNMNDREVVALMGAHTLGKTHLKNSGYEGPWTANNN------------------- 196
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
FDN +Y+NLL SG LP+D L+
Sbjct: 197 --------------VFDNSFYLNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL FH D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAFHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N+YY+NLL SG +LP+D L+
Sbjct: 193 NV-------------FTNEYYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 104/287 (36%), Gaps = 73/287 (25%)
Query: 45 FSWVENAV---MEDSRMAASLLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPN 94
F V NA+ + + + L+RL +H D D+TG F E P N
Sbjct: 19 FQKVYNAIALKIAEKKCGPVLVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSN 75
Query: 95 LNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSAN 154
GF+ ++ I + +S D+ ++ +V GP GR D+
Sbjct: 76 AGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PE 128
Query: 155 KAAATNGIPAPNSSLADLVAKF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNT 213
NG AD V F Q + + +++VAL GAH +GK S
Sbjct: 129 DTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL--------KRSGY 180
Query: 214 NGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLL--------------- 258
GP + +++ F N++Y+NLL
Sbjct: 181 EGP------------FGAANNV-------------FTNEFYLNLLNEDWKLEKNDANNEQ 215
Query: 259 ----SGEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKM 301
SG +LP+D L+ + I+ YA D FF+DF + K+
Sbjct: 216 WDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 262
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP C+ +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP-----------WGCANN 198
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 199 --------------VFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 153 TFFQRLNMNDREVVALKGAHALGKTHL--------KNSGYEGP------------WGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 193 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------FGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 45 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 99
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 100 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 154
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 155 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 194
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 195 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 241
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 242 KYLSIVKEYANDQDKFFKDFSKAFEKL 268
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 103 ---WISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 157
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 32/248 (12%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + + + ++ +
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPWGAANNVFTNEKYLNLL 204
Query: 234 DIDALAQLDLVTPATFDNQYYINLLSGEGLLPSDQILVSQDQTREIINSYAEDTSVFFED 293
+ D + + +D++ SG +LP+D L+ + I+ YA D FF+D
Sbjct: 205 NEDWKLEKNDANNEQWDSK------SGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 294 FKISMLKM 301
F + K+
Sbjct: 259 FSKAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPQG--------------- 194
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 195 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPQG--------------- 189
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 190 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 45 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 99
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 100 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 154
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK S GP + +
Sbjct: 155 TFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGP------------FGAAN 194
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 195 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 241
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 242 KYLSIVKEYANDQDRFFKDFSKAFEKL 268
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 98/271 (36%), Gaps = 70/271 (25%)
Query: 58 MAASLLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSD 110
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 39 YGPELVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKE 95
Query: 111 LESVCPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSL 169
+S D+ ++ +V GP GR D+ NG +P +
Sbjct: 96 FP-----WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDA 148
Query: 170 ADLVAKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQL 229
+ FQ + + +++VAL GAH +GK +S GP
Sbjct: 149 GYVRTFFQRLNMNDREVVALMGAHALGKTEL--------KNSGYEGP------------W 188
Query: 230 CSGSDIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQIL 270
+ +++ F N++Y+NLL SG +LP+D L
Sbjct: 189 GAANNV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSL 235
Query: 271 VSQDQTREIINSYAEDTSVFFEDFKISMLKM 301
+ + I+ YA D FF+DF + K+
Sbjct: 236 IQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 193 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP C
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP-------WGAANNC--- 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 198 ---------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 49 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 103
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 104 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 158
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 159 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 198
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 199 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 245
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 246 KYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------YGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 193 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPWNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 157
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 193 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 152
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK S GP + +
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGP------------WGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 193 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 157
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGG--------------- 194
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 195 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 96/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 157
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGG--------------- 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 193 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDYDKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGG--------------- 189
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 190 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGG--------------- 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 193 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 44 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 98
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 99 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 153
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 154 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGG--------------- 190
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP+D L+
Sbjct: 191 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 240
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 241 KYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 93/248 (37%), Gaps = 32/248 (12%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK L S N N +L L +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTH-LKNSGYEGPWGAANNVFTNEGYLNLLNEDWKLE 214
Query: 234 DIDALAQLDLVTPATFDNQYYINLLSGEGLLPSDQILVSQDQTREIINSYAEDTSVFFED 293
DA N + SG +LP+D L+ + I+ YA D FF+D
Sbjct: 215 KNDA-------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 294 FKISMLKM 301
F + K+
Sbjct: 262 FSKAFEKL 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDMDKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L++L +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVKLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 49 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 103
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 104 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 158
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 159 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 198
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP++ L+
Sbjct: 199 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDP 245
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 246 KYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 88/240 (36%), Gaps = 60/240 (25%)
Query: 82 TGDFVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSW 141
T F E P N GF+ ++ I + +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 142 EVPMGRRDSFSANKAAATNG-IPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARC 200
GR D+ NG +P + + FQ + + +++VAL GAH +GK
Sbjct: 127 PWRCGRVDT--PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 201 LTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLL-- 258
+S GP + +++ F N++Y+NLL
Sbjct: 185 --------KNSGYEGP------------WGAANNV-------------FTNEFYLNLLNE 211
Query: 259 -----------------SGEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKM 301
SG +LP+D L+ + I+ YA D FF+DF + K+
Sbjct: 212 DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 88/240 (36%), Gaps = 60/240 (25%)
Query: 82 TGDFVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSW 141
T F E P N GF+ ++ I + +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 142 EVPMGRRDSFSANKAAATNG-IPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARC 200
GR D+ NG +P + + FQ + + +++VAL GAH +GK
Sbjct: 127 PWRCGRVDT--PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
Query: 201 LTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLL-- 258
+S GP + +++ F N++Y+NLL
Sbjct: 185 --------KNSGYEGP------------WGAANNV-------------FTNEFYLNLLNE 211
Query: 259 -----------------SGEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKM 301
SG +LP+D L+ + I+ YA D FF+DF + K+
Sbjct: 212 DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 88/240 (36%), Gaps = 60/240 (25%)
Query: 82 TGDFVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILAVAARDSVVLTAGPSW 141
T F E P N GF+ ++ I + +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 142 EVPMGRRDSFSANKAAATNG-IPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARC 200
GR D+ NG +P + + FQ + + +++VAL GAH +GK
Sbjct: 122 PWRCGRVDT--PEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
Query: 201 LTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLL-- 258
+S GP + +++ F N++Y+NLL
Sbjct: 180 --------KNSGYEGP------------WGAANNV-------------FTNEFYLNLLNE 206
Query: 259 -----------------SGEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKM 301
SG +LP+D L+ + I+ YA D FF+DF + K+
Sbjct: 207 DWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 98/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 48 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 102
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 103 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 157
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 158 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 197
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP++ L+
Sbjct: 198 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDP 244
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 245 KYLSIVKEYANDQDKFFKDFSKAFEKL 271
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 153 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG LP+D L+
Sbjct: 193 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 94/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 155
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGPGG--------------- 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
F N++Y+NLL SG +LP++ L+
Sbjct: 193 ----------AANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL ++ D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWYTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK +S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 95/267 (35%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 46 LVRLAWHTSGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 100
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNGIPAPNSSLADLVA 174
+S D+ ++ +V GP GR D+ NG AD V
Sbjct: 101 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDADYVR 155
Query: 175 KF-QNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
F Q + + +++VAL GAH +GK S GP + +
Sbjct: 156 TFFQRLNMNDREVVALMGAHALGKTHL--------KRSGYEGP------------WGAAN 195
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+ L+
Sbjct: 196 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTXYSLIQDP 242
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 243 KYLSIVKEYANDQDKFFKDFSKAFEKL 269
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 49 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 103
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 104 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 158
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GAH +GK +S GP + +
Sbjct: 159 TFFQRLNMNDREVVALMGAHALGKTHL--------KNSGYEGP------------WGAAN 198
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+ L+
Sbjct: 199 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDP 245
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 246 KYLSIVKEYANDQDKFFKDFSKAFEKL 272
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 43 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 97
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 98 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 152
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GA +GK +S GP + +
Sbjct: 153 TFFQRLNMNDREVVALMGAGALGKTHL--------KNSGYEGP------------WGAAN 192
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 193 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 239
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 240 KYLSIVKEYANDQDKFFKDFSKAFEKL 266
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F E P N GF+ ++ I +
Sbjct: 44 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-- 98
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 99 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 153
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GA +GK +S GP + +
Sbjct: 154 TFFQRLNMNDREVVALMGAGALGKTHL--------KNSGYEGP------------WGAAN 193
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 194 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 240
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 241 KYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/267 (21%), Positives = 97/267 (36%), Gaps = 70/267 (26%)
Query: 62 LLRLHFHDCFGCDASVLLDDTGD-------FVGEKTAPPNLNSLRGFEVIDAIKSDLESV 114
L+RL +H D D+TG F + P N GF+ ++ I +
Sbjct: 44 LVRLAWHISGTWDKH---DNTGGSYGGTYRFKKQFNDPSNAGLQNGFKFLEPIHKEFP-- 98
Query: 115 CPETVSCADILAVAARDSVVLTAGPSWEVPMGRRDSFSANKAAATNG-IPAPNSSLADLV 173
+S D+ ++ +V GP GR D+ NG +P + +
Sbjct: 99 ---WISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT--PEDTTPDNGRLPDADKDAGYVR 153
Query: 174 AKFQNVGLTLQDMVALSGAHTMGKARCLTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGS 233
FQ + + +++VAL GA +GK +S GP + +
Sbjct: 154 TFFQRLNMNDREVVALMGAGALGKTHL--------KNSGYEGP------------WGAAN 193
Query: 234 DIDALAQLDLVTPATFDNQYYINLL-------------------SGEGLLPSDQILVSQD 274
++ F N++Y+NLL SG +LP+D L+
Sbjct: 194 NV-------------FTNEFYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDP 240
Query: 275 QTREIINSYAEDTSVFFEDFKISMLKM 301
+ I+ YA D FF+DF + K+
Sbjct: 241 KYLSIVKEYANDQDKFFKDFSKAFEKL 267
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 58/167 (34%)
Query: 162 IPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLT---FSSRLQSSSNTNGPDN 218
IP P +++ ++ +F + G + ++V L AH++ L F S L S
Sbjct: 152 IPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDS--------- 202
Query: 219 NPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYI-NLLSG-----------EGLLP- 265
TP FD Q+YI LL G E L P
Sbjct: 203 --------------------------TPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPF 236
Query: 266 -------SDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLG 305
SD +L +T S V + F+ +M KM LG
Sbjct: 237 PGGFRIRSDALLARDSRTACRWQSMTSSNEVMGQRFRAAMAKMSVLG 283
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 25/114 (21%)
Query: 160 NGIPAPNSSLADLVAKFQNVGLTLQDMVAL-SGAHTMGKARCLTFSSRLQSS-------- 210
NG P P +S D+ F +G+ + VAL +G H GK S + +
Sbjct: 258 NGTPDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTHGAVKGSNIGPAPEAADLGM 317
Query: 211 -----SNTNGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLLS 259
N+ G N P+ Q+ SG ++ + TP + N Y +L++
Sbjct: 318 QGLGWHNSVGDGNGPN------QMTSGLEV-----IWTKTPTKWSNGYLESLIN 360
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 162 IPAPNSSLADLVAKFQNVGLTLQDM 186
+P PN S+ DLV + VG+T +D+
Sbjct: 237 VPTPNVSVVDLVVNIEKVGVTAEDV 261
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 58/167 (34%)
Query: 162 IPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLT---FSSRLQSSSNTNGPDN 218
IP P +++ ++ + + G + ++V L AH++ L F S L S
Sbjct: 152 IPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDS--------- 202
Query: 219 NPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLL-------------------- 258
TP FD Q+YI L
Sbjct: 203 --------------------------TPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPF 236
Query: 259 SGEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLG 305
GE + SD +L +T S V + ++ +M KM LG
Sbjct: 237 PGEFRMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKMSVLG 283
>pdb|1NEK|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Ubiquinone Bound
pdb|1NEN|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Dinitrophenol-17 Inhibitor Co-Crystallized At The
Ubiquinone Binding Site
pdb|2ACZ|A Chain A, Complex Ii (Succinate Dehydrogenase) From E. Coli With
Atpenin A5 Inhibitor Co-Crystallized At The Ubiquinone
Binding Site
pdb|2WDQ|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDQ|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Carboxin Bound
pdb|2WDV|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDV|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With An
Empty Quinone-Binding Pocket
pdb|2WDR|A Chain A, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|E Chain E, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WDR|I Chain I, E. Coli Succinate:quinone Oxidoreductase (Sqr) With
Pentachlorophenol Bound
pdb|2WP9|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WP9|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhb His207thr Mutant
pdb|2WS3|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WS3|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd Tyr83phe Mutant
pdb|2WU2|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU2|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhc His84met Mutant
pdb|2WU5|A Chain A, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|E Chain E, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
pdb|2WU5|I Chain I, Crystal Structure Of The E. Coli Succinate:quinone
Oxidoreductase (Sqr) Sdhd His71met Mutant
Length = 588
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 71/193 (36%), Gaps = 33/193 (17%)
Query: 16 LKEACIGEIGFELQFNIYNDSCPEAEAIIFSWVENAVMEDSR-MAASLLRLHFHDCFGCD 74
+ E C GE G+ L E + + NA R + A + + + GCD
Sbjct: 253 VTEGCRGEGGYLLN--------KHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCD 304
Query: 75 ------ASVLLDDTGDFVGEKTAPPNLNSLRGFEVIDAIKSDLESVCPETVSCADILA-- 126
A + LD G V E P L R F +D +K + P +C ++
Sbjct: 305 GPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPI----PVIPTCHYMMGGI 360
Query: 127 ---VAARDSVVLTAGPSWEVP----MGRRDSFSANKAAATNGIPAPNSSLADLVAKFQNV 179
V + V G VP +G S + A G +SL DLV +
Sbjct: 361 PTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGG-----NSLLDLVVFGRAA 415
Query: 180 GLTLQDMVALSGA 192
GL LQ+ +A GA
Sbjct: 416 GLHLQESIAEQGA 428
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 58/167 (34%)
Query: 162 IPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLT---FSSRLQSSSNTNGPDN 218
IP P +++ ++ + + G + ++V L AH++ L F S L S
Sbjct: 153 IPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDS--------- 203
Query: 219 NPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLL-------------------- 258
TP FD Q+YI L
Sbjct: 204 --------------------------TPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPF 237
Query: 259 SGEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLG 305
GE + SD +L +T S V + ++ +M KM LG
Sbjct: 238 PGEFRMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKMSVLG 284
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 58/167 (34%)
Query: 162 IPAPNSSLADLVAKFQNVGLTLQDMVALSGAHTMGKARCLT---FSSRLQSSSNTNGPDN 218
IP P +++ ++ + + G + ++V L AH++ L F S L S
Sbjct: 152 IPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLASQEGLNSAIFRSPLDS--------- 202
Query: 219 NPDFLQSLQQLCSGSDIDALAQLDLVTPATFDNQYYINLL-------------------- 258
TP FD Q+YI L
Sbjct: 203 --------------------------TPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPF 236
Query: 259 SGEGLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMGSLG 305
GE + SD +L +T S V + ++ +M KM LG
Sbjct: 237 PGEFRMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKMSVLG 283
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 129 ARDSVVLTAGPSWEVPMGRRDS----FSANKAAATNGIPAPNSSL----ADLVAKFQ--- 177
A+ S + + GP ++P G D ++A + N + D V F
Sbjct: 100 AQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAG 159
Query: 178 NVGLTLQDMVALSGAHTMGKARC---LTFSSRLQSSSNTNGPDNNPDFLQSLQQLCSGSD 234
VGL L ++ + GAHT+ A L + + N + D L+ + + +G
Sbjct: 160 GVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINA--SKEDILRQVLKFTNGKG 217
Query: 235 IDALAQLDLVTPATFD 250
+D A D V TF+
Sbjct: 218 VD--ASFDSVGKDTFE 231
>pdb|1T5E|A Chain A, The Structure Of Mexa
pdb|1T5E|B Chain B, The Structure Of Mexa
pdb|1T5E|C Chain C, The Structure Of Mexa
pdb|1T5E|D Chain D, The Structure Of Mexa
pdb|1T5E|E Chain E, The Structure Of Mexa
pdb|1T5E|F Chain F, The Structure Of Mexa
pdb|1T5E|G Chain G, The Structure Of Mexa
pdb|1T5E|H Chain H, The Structure Of Mexa
pdb|1T5E|I Chain I, The Structure Of Mexa
pdb|1T5E|J Chain J, The Structure Of Mexa
pdb|1T5E|K Chain K, The Structure Of Mexa
pdb|1T5E|L Chain L, The Structure Of Mexa
pdb|1T5E|M Chain M, The Structure Of Mexa
Length = 360
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 197 KARCLTFSSRLQSSSNT-----NGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDN 251
+A+ +T ++ L +N P N L+ L GSD+ A QL + PAT++
Sbjct: 21 EAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRL--FKEGSDVKAGQQLYQIDPATYEA 78
Query: 252 QY---YINLLSGE------GLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMG 302
Y NL S + LL +DQ VS+ Q + +Y + + E +I++
Sbjct: 79 DYQSAQANLASTQEQAQRYKLLVADQA-VSKQQYADANAAYLQSKAA-VEQARINLRYTK 136
Query: 303 SLGPASGNDGQ 313
L P SG G+
Sbjct: 137 VLSPISGRIGR 147
>pdb|2V4D|A Chain A, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|B Chain B, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|C Chain C, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|D Chain D, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|E Chain E, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|F Chain F, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|G Chain G, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|H Chain H, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|I Chain I, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|J Chain J, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|K Chain K, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|L Chain L, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|M Chain M, Re-Refinement Of Mexa Adaptor Protein
Length = 360
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 197 KARCLTFSSRLQSSSNT-----NGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDN 251
+A+ +T ++ L +N P N L+ L GSD+ A QL + PAT++
Sbjct: 21 EAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRL--FKEGSDVKAGQQLYQIDPATYEA 78
Query: 252 QY---YINLLSGE------GLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMG 302
Y NL S + LL +DQ VS+ Q + +Y + + E +I++
Sbjct: 79 DYQSAQANLASTQEQAQRYKLLVADQA-VSKQQYADANAAYLQSKAA-VEQARINLRYTK 136
Query: 303 SLGPASGNDGQ 313
L P SG G+
Sbjct: 137 VLSPISGRIGR 147
>pdb|1VF7|A Chain A, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|B Chain B, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|C Chain C, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|D Chain D, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|E Chain E, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|F Chain F, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|G Chain G, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|H Chain H, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|I Chain I, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|J Chain J, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|K Chain K, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|L Chain L, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|M Chain M, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
Length = 369
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 18/131 (13%)
Query: 197 KARCLTFSSRLQSSSNT-----NGPDNNPDFLQSLQQLCSGSDIDALAQLDLVTPATFDN 251
+A+ +T ++ L +N P N L+ L GSD+ A QL + PAT++
Sbjct: 24 EAQTVTLNTELPGRTNAFRIAEVRPQVNGIILKRL--FKEGSDVKAGQQLYQIDPATYEA 81
Query: 252 QY---YINLLSGE------GLLPSDQILVSQDQTREIINSYAEDTSVFFEDFKISMLKMG 302
Y NL S + LL +DQ VS+ Q + +Y + + E +I++
Sbjct: 82 DYQSAQANLASTQEQAQRYKLLVADQA-VSKQQYADANAAYLQSKAA-VEQARINLRYTK 139
Query: 303 SLGPASGNDGQ 313
L P SG G+
Sbjct: 140 VLSPISGRIGR 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,306,495
Number of Sequences: 62578
Number of extensions: 370518
Number of successful extensions: 1143
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 190
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)