BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038521
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis
thaliana GN=At4g11170 PE=2 SV=1
Length = 1095
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 96/153 (62%), Gaps = 5/153 (3%)
Query: 1 MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISES 60
MASSSS + +DVF SFRGED R+NF SHL I TF D+ +KR I
Sbjct: 1 MASSSS----NSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHE 56
Query: 61 LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIG 120
L I S IS+++FSE YASS WCLDEL++I++CK G V+PVFY+VDPS +RKQ G
Sbjct: 57 LRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTG 116
Query: 121 SFGDSFF-ILKERFPYKTRNWRSALTEAANLSG 152
FG SF + + NWR ALT+AAN+ G
Sbjct: 117 KFGMSFLETCCGKTEERQHNWRRALTDAANILG 149
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 20/151 (13%)
Query: 161 FQGSYFAHNVRSAEETGRLDD------LRKELLSKLLN--DWNVRNFQNINVNFQSKRLA 212
F S F NVR + LDD L++ LSKLL+ D VR+ I +RL
Sbjct: 233 FNLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSKLLDQKDLRVRHLGAIE-----ERLK 287
Query: 213 REKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHA 272
+KVLI+ DDV++ Q++ L F + SR+++T ++KQ+L + +I+H+YQ+
Sbjct: 288 SQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTTQNKQLLVSHDINHMYQVAYPSKQ 347
Query: 273 NALKLFTQCAFRRD-------HLDAGYTALA 296
AL +F Q AF++ HL +T LA
Sbjct: 348 EALTIFCQHAFKQSSPSDDLKHLAIEFTTLA 378
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
Length = 1144
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 15 HDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDND-LKRGDEISESLLGTIEASTISII 73
+DVF+SFRGEDTR FTSHL+ L I+TF D+ L+ G I L IE S +I+
Sbjct: 12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71
Query: 74 IFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERF 133
+FSE YA+S+WCL+EL+KI+ECK + Q VIP+FY VDPS VR Q SF +F + ++
Sbjct: 72 VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131
Query: 134 P---YKTRNWRSALTEAANLSG 152
+ WR AL EAANL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 5/138 (3%)
Query: 160 HFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIV 219
F G+ F +++ E + L+ LLS+LL + N + + + RL +KVLIV
Sbjct: 242 QFDGACFLKDIK--ENKRGMHSLQNALLSELLREKANYNNEEDGKHQMASRLRSKKVLIV 299
Query: 220 FDDV-NHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLF 278
DD+ N +E L G LD F +GSR+IIT RDK ++ +I IY++ L +++LF
Sbjct: 300 LDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEKNDI--IYEVTALPDHESIQLF 357
Query: 279 TQCAFRRDHLDAGYTALA 296
Q AF ++ + + L+
Sbjct: 358 KQHAFGKEVPNENFEKLS 375
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis
thaliana GN=SNC1 PE=1 SV=3
Length = 1301
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 99/157 (63%), Gaps = 7/157 (4%)
Query: 1 MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISES 60
+ASSS R +DVF SFRGED RD+F SHL L I TFID++++R I
Sbjct: 3 IASSSGSRR-----YDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPE 56
Query: 61 LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIG 120
LL I+ S I+I+IFS+ YASS WCL+EL++I +C N Q+VIP+F+ VD S V+KQ G
Sbjct: 57 LLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTG 116
Query: 121 SFGDSF-FILKERFPYKTRNWRSALTEAANLSGFDSR 156
FG F K + + ++W+ AL A ++G+D R
Sbjct: 117 EFGKVFEETCKAKSEDEKQSWKQALAAVAVMAGYDLR 153
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 183 RKELLSKLLNDWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASG 242
KELLS++L +++ ++ V Q RL ++KVLI+ DDV+ ++ L+G+ + F SG
Sbjct: 257 EKELLSEILGQKDIK-IEHFGVVEQ--RLKQQKVLILLDDVDSLEFLKTLVGKAEWFGSG 313
Query: 243 SRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALA 296
SR+I+ +D+Q+L EID IY+++ AL + + AF +D + LA
Sbjct: 314 SRIIVITQDRQLLKAHEIDLIYEVEFPSEHLALTMLCRSAFGKDSPPDDFKELA 367
>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8
PE=2 SV=1
Length = 354
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 1 MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISES 60
MA+SSS R VF++FRG+D R+ F S L A+ + NI FID D G ++ +
Sbjct: 1 MAASSSV-RPTPTGPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-N 58
Query: 61 LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIG 120
L I+ S ++++IFS+ Y SS+WCLDEL +I +C G IP+FY++ PS V + G
Sbjct: 59 LFVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKG 118
Query: 121 SFGDSFFILKERF---PYKTRNWRSALTEAANLSGF 153
FGD+F +LKE++ P +T+ W+ AL L G
Sbjct: 119 GFGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154
>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5
PE=2 SV=1
Length = 411
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Query: 17 VFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFS 76
VF++FRG+D R F S L AL + I FID +RG + SL TI S I+++IFS
Sbjct: 24 VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82
Query: 77 EKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERF--- 133
E Y S WC+DEL+KI E I+IP+FYR+D V+ G FGD+F+ L +++
Sbjct: 83 EGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPE 142
Query: 134 PYKTRNWRSALTEAANL 150
P K W AL L
Sbjct: 143 PKKLHKWTEALFSVCEL 159
>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6
PE=2 SV=1
Length = 392
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 6/148 (4%)
Query: 1 MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISES 60
MASSSS + VF+ FRG D R +F S L AL + NI FID + G E++ +
Sbjct: 1 MASSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA-N 59
Query: 61 LLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIG 120
LL IE S ++++IFS + S CL+EL KI E K IVIP+FY+V PS V+ G
Sbjct: 60 LLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEG 119
Query: 121 SFGDSFFIL----KERFPYKTRNWRSAL 144
FGD+F L + P T+ W+ AL
Sbjct: 120 KFGDNFRALERNNRHMLPI-TQKWKEAL 146
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14
PE=2 SV=1
Length = 571
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 4/149 (2%)
Query: 15 HDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIII 74
+ VF++FRG++ R++F L A+ I F D RG ++ L IE S +++ I
Sbjct: 358 YQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVAI 416
Query: 75 FSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERF- 133
FSE+Y S WCLDEL+K+ E +V+PVFYR++ + ++ +G+FGD+ L+ +
Sbjct: 417 FSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGAFGDNLRNLEWEYR 476
Query: 134 --PYKTRNWRSALTEAANLSGFDSRVIRH 160
P + + W+ AL+ + G S + R+
Sbjct: 477 SEPERIQKWKEALSSVFSNIGLTSDIRRY 505
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana
GN=WRKY19 PE=2 SV=1
Length = 1895
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 180 DDLRKELLSKLLN-DWNVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDR 238
D +R+ LS++L + +V +I +F RL R+++L++ DDVN R ++ +G L+
Sbjct: 884 DAVRENFLSEVLEVEPHVIRISDIKTSFLRSRLQRKRILVILDDVNDYRDVDTFLGTLNY 943
Query: 239 FASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLF 278
F GSR+I+T+R+++V C+IDH+Y++K L +L L
Sbjct: 944 FGPGSRIIMTSRNRRVFVLCKIDHVYEVKPLDIPKSLLLL 983
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 23/148 (15%)
Query: 8 PR-NDKKMHDVFVSF-RGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTI 65
PR + K +DV + + R + + ++F SHL ++L + I + ++ +E+ +
Sbjct: 660 PRFSSSKDYDVVIRYGRADISNEDFISHLRASLCRRGISVY-----EKFNEVD-----AL 709
Query: 66 EASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDS 125
+ II+ + Y S LL ILE + ++V P+FYR+ P ++ +
Sbjct: 710 PKCRVLIIVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKNY-ER 763
Query: 126 FFILKERFPYKTRNWRSALTEAANLSGF 153
F++ E + W++AL E + G+
Sbjct: 764 FYLQDE-----PKKWQAALKEITQMPGY 786
>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2
Length = 1613
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 1/124 (0%)
Query: 161 FQGSYFAHNVRSAEETGRLDDLRKELLSKLLND-WNVRNFQNINVNFQSKRLAREKVLIV 219
+ S F N A L L KE + K+L D +++ + + +L +++L+V
Sbjct: 217 YDASCFIENFDEAFHKEGLHRLLKERIGKILKDEFDIESSYIMRPTLHRDKLYDKRILVV 276
Query: 220 FDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFT 279
DDV E + RLD F SGS +IIT+ DKQV C+I+ IY ++ L AL+LF+
Sbjct: 277 LDDVRDSLAAESFLKRLDWFGSGSLIIITSVDKQVFAFCQINQIYTVQGLNVHEALQLFS 336
Query: 280 QCAF 283
Q F
Sbjct: 337 QSVF 340
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 24 EDTRDNFTSHLFSALFQNNIETFIDN-DLKRGD--EISESLLGTIEASTISIIIFSEKYA 80
E + SHL +AL + I F+D L+ I ++ T A + ++I E
Sbjct: 26 ETVLHSLVSHLSAALRREGISVFVDACGLQETKFFSIKQNQPLTDGARVLVVVISDEVEF 85
Query: 81 SSKWCLDELLKILECKRNYGQIVIPVFYRVD 111
W + LK+++ +N G +V+PVFY VD
Sbjct: 86 YDPW-FPKFLKVIQGWQNNGHVVVPVFYGVD 115
>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana
GN=WRKY16 PE=2 SV=1
Length = 1372
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 210 RLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKEL 269
RL ++VL+V DDV P +E +G D F S +IIT++DK V C ++ IY+++ L
Sbjct: 237 RLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITSKDKSVFRLCRVNQIYEVQGL 296
Query: 270 VHANALKLFTQCA 282
AL+LF+ CA
Sbjct: 297 NEKEALQLFSLCA 309
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 24 EDTRDNFTSHLFSALFQNNI-ETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASS 82
E+ R +F SHL AL + + + FID+D D +S +E + +S++I S
Sbjct: 14 EEVRYSFVSHLSKALQRKGVNDVFIDSD----DSLSNESQSMVERARVSVMILPGNRTVS 69
Query: 83 KWCLDELLKILECKRNYGQIVIPVFYRV 110
LD+L+K+L+C++N Q+V+PV Y V
Sbjct: 70 ---LDKLVKVLDCQKNKDQVVVPVLYGV 94
>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana
GN=WRKY52 PE=2 SV=3
Length = 1288
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 121/303 (39%), Gaps = 56/303 (18%)
Query: 24 EDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSK 83
E+ R +F SHL AL + I + + ES IE + +S+++ S+
Sbjct: 17 EEVRYSFVSHLSEALRRKGINNVVVDVDIDDLLFKESQ-AKIEKAGVSVMVLPGNCDPSE 75
Query: 84 WCLDELLKILECKRN-YGQIVIPVFY-----------RVD---PSRVRKQIGSFGDSFFI 128
LD+ K+LEC+RN Q V+ V Y +D SR+ + DS +
Sbjct: 76 VWLDKFAKVLECQRNNKDQAVVSVLYGDSLLRDQWLSELDFRGLSRIHQSRKECSDSILV 135
Query: 129 LK-ERFPYKTRNW------RSALTEAANLSGFDSRVIR---------------------- 159
+ R Y+T + S L E N+ IR
Sbjct: 136 EEIVRDVYETHFYVGRIGIYSKLLEIENMVNKQPIGIRCVGIWGMPGIGKTTLAKAVFDQ 195
Query: 160 ---HFQGSYFAHNV-RSAEETGRLDDLRKELLSKLLNDWNVRNFQNINVNFQSKRLAREK 215
F S F + +S E G L ++LL ND + ++ SKR
Sbjct: 196 MSSAFDASCFIEDYDKSIHEKGLYCLLEEQLLPG--NDATIMKLSSLRDRLNSKR----- 248
Query: 216 VLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANAL 275
VL+V DDV + E + D GS +IIT+RDKQV C I+ IY+++ L A
Sbjct: 249 VLVVLDDVRNALVGESFLEGFDWLGPGSLIIITSRDKQVFCLCGINQIYEVQGLNEKEAR 308
Query: 276 KLF 278
+LF
Sbjct: 309 QLF 311
>sp|P55546|Y4LF_RHISN Uncharacterized protein y4lF OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02690 PE=4 SV=1
Length = 323
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Query: 14 MHDVFVSFRGEDT--RDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTIS 71
M VF S+ D RD L Q IET+ D + G++I ++ I I
Sbjct: 1 MPSVFFSYSHADEGLRDQLEKQLSMLKRQGVIETWHDRRIGAGEDIHRAIDDHINTDDII 60
Query: 72 IIIFSEKYASSKWCLD-ELLKILECKRNYGQIVIPVFYRV 110
+++ S + +S +C D E+ + +E + IVIP+ R
Sbjct: 61 LLLVSADFIASDYCYDIEMQRAMERHHSGEAIVIPIILRA 100
>sp|Q9FHE5|P2A07_ARATH Uncharacterized protein PHLOEM PROTEIN 2-LIKE A7 OS=Arabidopsis
thaliana GN=PP2A7 PE=4 SV=1
Length = 332
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 24 EDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSK 83
ED + L L NI FID + RG + ++L I+ S IS+ IFSE SK
Sbjct: 51 EDVSKGLINFLEPVLQNKNINVFIDEEEVRGKGL-KNLFKRIQDSKISLAIFSE----SK 105
Query: 84 WCLDELLKILECKRNYGQIVIPVFYRVDPS 113
++LLK E IP+FY+VD +
Sbjct: 106 CDFNDLLKNNESADE----AIPIFYKVDAT 131
>sp|Q3SW79|HRCA_NITWN Heat-inducible transcription repressor HrcA OS=Nitrobacter
winogradskyi (strain Nb-255 / ATCC 25391) GN=hrcA PE=3
SV=1
Length = 362
Score = 35.4 bits (80), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 40/232 (17%)
Query: 46 FIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIP 105
F+D ++ GD ++E +I++ S+ K S + L+E L L +V+
Sbjct: 91 FVDALMQVGD-LTEPERQSIQSQLASV----GKAQSVEAALEEALTRLSGLTRTAAVVLT 145
Query: 106 V----------FYRVDPSR----VRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLS 151
F R++P + + + G + L P SALTEA+N
Sbjct: 146 AKSNVRLKHIEFVRLEPDKALVVLVAEDGQVENRVLTLPSGVPA------SALTEASNF- 198
Query: 152 GFDSRV-IRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWN----------VRNFQ 200
++R+ R + A+ LD L +++++ + W+ VR
Sbjct: 199 -LNARIRGRTLAEARLELETALAQSKAELDQLTQKIVAAGIASWSGGDSDDRQLIVRGHA 257
Query: 201 NINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDK 252
N+ + + E+V ++FDD+ R++ L+GR +R A G R+ I + +K
Sbjct: 258 NLLEDLHAME-DLERVRLLFDDLETKREVIDLLGRAER-ADGVRIFIGSENK 307
>sp|Q95241|A4_SAISC Amyloid beta A4 protein OS=Saimiri sciureus GN=APP PE=2 SV=1
Length = 751
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 14/105 (13%)
Query: 103 VIPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK--------TRNWRSALTEAAN 149
VIP P V K + + GD F KER K R W A +A N
Sbjct: 344 VIPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKN 403
Query: 150 LSGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
L D + VI+HFQ + +A E +L + + +LND
Sbjct: 404 LPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 448
>sp|Q60495|A4_CAVPO Amyloid beta A4 protein OS=Cavia porcellus GN=APP PE=1 SV=2
Length = 770
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 89 LLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK------- 136
LLK + G + +P P V K + + GD F KER K
Sbjct: 349 LLKTSGEPVSQGPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQ 408
Query: 137 -TRNWRSALTEAANLSGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
R W A +A NL D + VI+HFQ + +A E +L + + +LND
Sbjct: 409 VMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 467
>sp|P35553|FLPA_METVO Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase OS=Methanococcus
voltae GN=flpA PE=3 SV=1
Length = 228
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 214 EKVLIVFDDVNHPRQIELLIGRLDRF---ASGSRVIITARDKQVLTNCEIDHIYQMKELV 270
EKV ++F+DV P Q E+LI F + I AR V N + Q KE++
Sbjct: 140 EKVDVIFEDVAQPNQAEILIKNAKWFLKKGGYGMISIKARSVDVTENPRVIFEAQ-KEIM 198
Query: 271 HANALKLFTQC---AFRRDHL 288
N K+ F +DH+
Sbjct: 199 EQNGFKIVDAINIEPFEKDHM 219
>sp|Q58108|FLPA_METJA Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=flpA PE=1
SV=1
Length = 230
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 214 EKVLIVFDDVNHPRQIELLIGRLDRF-ASGSRVIITARDKQVLTNCEIDHIY-QMKELVH 271
EKV ++++DV P Q E+LI F G +I + + + + I+ + KE++
Sbjct: 142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILE 201
Query: 272 ANALKLFTQC---AFRRDHL 288
A K+ + F +DH+
Sbjct: 202 AGGFKIVDEVDIEPFEKDHV 221
>sp|Q86DA5|SARM1_CAEEL Sterile alpha and TIR motif-containing protein tir-1
OS=Caenorhabditis elegans GN=tir-1 PE=1 SV=1
Length = 1000
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 13 KMHDVFVSFRGEDTRDNFTSHLFSALFQ-NNIETFIDNDLKRGDEISESLLGTIEASTIS 71
K DVF+S+R + N + L L Q FID D + SLL I+A+
Sbjct: 760 KQIDVFISYR--RSTGNQLASLIKVLLQLRGYRVFIDVDKLYAGKFDSSLLKNIQAAKHF 817
Query: 72 IIIFS----EKYASSKWCLDELLKILECKRNYGQIVIPVF 107
I++ + ++ + C D + K L+C + + +IP+F
Sbjct: 818 ILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQKNIIPIF 857
>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana
GN=At4g27190 PE=2 SV=1
Length = 985
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 211 LAREKVLIVFDDVNHPRQIELL-IGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKEL 269
+ K L++ DDV P ++LL I R + GS+VI+T+R +V + + D ++ L
Sbjct: 244 MKERKFLLILDDVWKPIDLDLLGIPRTEE-NKGSKVILTSRFLEVCRSMKTDLDVRVDCL 302
Query: 270 VHANALKLFTQCA---FRRDHLDAGYTALAHKAFSTRTQVI 307
+ +A +LF + A R DH+ A++ + +I
Sbjct: 303 LEEDAWELFCKNAGDVVRSDHVRKIAKAVSQECGGLPLAII 343
>sp|Q1QRU4|HRCA_NITHX Heat-inducible transcription repressor HrcA OS=Nitrobacter
hamburgensis (strain X14 / DSM 10229) GN=hrcA PE=3 SV=1
Length = 362
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 40/232 (17%)
Query: 46 FIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIP 105
F+D ++ GD ++E+ +I+ S+ K S + LD+ L L +V+
Sbjct: 91 FVDALMQVGD-LTETERQSIQTQLASV----GKAQSVEAALDQALTRLSGLTRAAAVVLT 145
Query: 106 V----------FYRVDPSR----VRKQIGSFGDSFFILKERFPYKTRNWRSALTEAANLS 151
F R++P + + + G + L P SALTEA+N
Sbjct: 146 AKSNVRLKHIEFVRLEPEKALVVLVAEDGQVENRVLTLPSGVPA------SALTEASNF- 198
Query: 152 GFDSRV-IRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLNDWN----------VRNFQ 200
++R+ R + + LD L +++++ + W+ VR
Sbjct: 199 -LNARIRGRTLAEARLELETALTQSKAELDQLTQKVIAAGIASWSGGDSDDRQLIVRGHA 257
Query: 201 NINVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDK 252
N+ + + E+V ++FDD+ R + L+GR +R A G R+ I + +K
Sbjct: 258 NLLEDLHALE-DLERVRLLFDDLETKRGVIDLLGRAER-ADGVRIFIGSENK 307
>sp|P79307|A4_PIG Amyloid beta A4 protein OS=Sus scrofa GN=APP PE=2 SV=2
Length = 770
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 89 LLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK------- 136
LLK + + +P P V K + + GD F KER K
Sbjct: 349 LLKTTQEHLPQDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQ 408
Query: 137 -TRNWRSALTEAANLSGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
R W A +A NL D + VI+HFQ + +A E +L + + +LND
Sbjct: 409 VMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 467
>sp|Q5IS80|A4_PANTR Amyloid beta A4 protein OS=Pan troglodytes GN=APP PE=2 SV=1
Length = 770
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 89 LLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK------- 136
LLK + + +P P V K + + GD F KER K
Sbjct: 349 LLKTTQEPLARDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQ 408
Query: 137 -TRNWRSALTEAANLSGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
R W A +A NL D + VI+HFQ + +A E +L + + +LND
Sbjct: 409 VMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 467
>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis
thaliana GN=At3g14460 PE=3 SV=1
Length = 1424
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 195 NVRNFQNINVNFQSKRLAREKVLIVFDDV--NHPRQIELLIGRLDRFASGSRVIITARDK 252
N + ++ + + K L+ ++ L+V DD + E GS++++T R +
Sbjct: 254 NTEDLPSLQIQLK-KTLSGKRFLLVLDDFWSESDSEWESFQVAFTDAEEGSKIVLTTRSE 312
Query: 253 QVLTNCEIDHIYQMKELVHANALKLFTQCAF 283
V T + + IYQMK + + +L ++ AF
Sbjct: 313 IVSTVAKAEKIYQMKLMTNEECWELISRFAF 343
>sp|P05067|A4_HUMAN Amyloid beta A4 protein OS=Homo sapiens GN=APP PE=1 SV=3
Length = 770
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 89 LLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK------- 136
LLK + + +P P V K + + GD F KER K
Sbjct: 349 LLKTTQEPLARDPVKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQ 408
Query: 137 -TRNWRSALTEAANLSGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
R W A +A NL D + VI+HFQ + +A E +L + + +LND
Sbjct: 409 VMREWEEAERQAKNLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 467
>sp|P53601|A4_MACFA Amyloid beta A4 protein OS=Macaca fascicularis GN=APP PE=2 SV=3
Length = 770
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 102 IVIPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK--------TRNWRSALTEAA 148
+ +P P V K + + GD F KER K R W A +A
Sbjct: 362 VKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAK 421
Query: 149 NLSGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
NL D + VI+HFQ + +A E +L + + +LND
Sbjct: 422 NLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 467
>sp|P08592|A4_RAT Amyloid beta A4 protein OS=Rattus norvegicus GN=App PE=1 SV=2
Length = 770
Score = 32.3 bits (72), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 14/106 (13%)
Query: 102 IVIPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK--------TRNWRSALTEAA 148
+ +P P V K + + GD F KER K R W A +A
Sbjct: 362 VKLPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAK 421
Query: 149 NLSGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
NL D + VI+HFQ + +A E +L + + +LND
Sbjct: 422 NLPKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 467
>sp|Q9FHB3|FBRL3_ARATH Putative rRNA 2'-O-methyltransferase fibrillarin 3 OS=Arabidopsis
thaliana GN=FIB3 PE=2 SV=1
Length = 292
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 210 RLAREKVLIVFDDVNHPRQIELLIGRLDRF-ASGSRVIITARDKQVLTNCEIDHIYQMK- 267
R+ V I+F DVNHP Q +L F SG +I+ + + + + +YQM+
Sbjct: 198 RMLVGMVDIIFSDVNHPEQANILSLNASYFLKSGGHFMISIKANSIDSTIAAETVYQMEV 257
Query: 268 -----------ELVHANALKLFTQCAF 283
E++H ++ + C F
Sbjct: 258 EKLQMEELRPTEILHLDSCEEKHACVF 284
>sp|P12023|A4_MOUSE Amyloid beta A4 protein OS=Mus musculus GN=App PE=1 SV=3
Length = 770
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 104 IPVFYRVDPSRVRKQIGSFGDS-----FFILKERFPYK--------TRNWRSALTEAANL 150
+P P V K + + GD F KER K R W A +A NL
Sbjct: 364 LPTTAASTPDAVDKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNL 423
Query: 151 SGFDSR-VIRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND 193
D + VI+HFQ + +A E +L + + +LND
Sbjct: 424 PKADKKAVIQHFQEKVESLEQEAANERQQLVETHMARVEAMLND 467
>sp|Q6IA17|SIGIR_HUMAN Single Ig IL-1-related receptor OS=Homo sapiens GN=SIGIRR PE=1 SV=3
Length = 410
Score = 31.6 bits (70), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 10 NDKKMHDVFVSFRGEDTRDNFTSHLFSALFQN--NIETFIDN-DLKRGDEISESLLGTIE 66
ND K++D +VS+ F + + + + F+D+ DL E S LL +
Sbjct: 160 NDGKLYDAYVSYSDCPEDRKFVNFILKPQLERRRGYKLFLDDRDLLPRAEPSADLLVNLS 219
Query: 67 ASTISIIIFSEKYASSKWCL----DELLKILECKR 97
I++ S+ + S WC + L ++LE R
Sbjct: 220 RCRRLIVVLSDAFLSRAWCSHSFREGLCRLLELTR 254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,700,813
Number of Sequences: 539616
Number of extensions: 4277449
Number of successful extensions: 14092
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 14050
Number of HSP's gapped (non-prelim): 46
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)