Query 038521
Match_columns 324
No_of_seqs 308 out of 2385
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3E-64 6.5E-69 536.0 28.8 298 1-305 1-387 (1153)
2 PLN03194 putative disease resi 100.0 3.2E-43 6.9E-48 293.8 12.9 133 10-156 22-156 (187)
3 KOG4658 Apoptotic ATPase [Sign 99.9 5.2E-25 1.1E-29 226.7 9.6 172 144-320 181-370 (889)
4 PF01582 TIR: TIR domain; Int 99.9 2.9E-23 6.3E-28 170.8 4.0 129 17-145 1-140 (141)
5 PF00931 NB-ARC: NB-ARC domain 99.9 3.8E-22 8.2E-27 182.7 8.7 166 146-316 23-206 (287)
6 smart00255 TIR Toll - interleu 99.8 5.4E-21 1.2E-25 156.6 11.1 134 14-148 1-138 (140)
7 PF13676 TIR_2: TIR domain; PD 99.6 9.9E-16 2.1E-20 118.7 3.9 87 17-109 1-87 (102)
8 KOG3678 SARM protein (with ste 99.0 1.1E-09 2.4E-14 102.9 7.3 93 10-108 608-709 (832)
9 PF08937 DUF1863: MTH538 TIR-l 98.0 1.2E-05 2.6E-10 65.0 5.8 90 15-109 1-108 (130)
10 PF05729 NACHT: NACHT domain 97.1 0.0019 4.1E-08 53.3 7.7 70 212-281 79-162 (166)
11 PF08357 SEFIR: SEFIR domain; 96.5 0.004 8.6E-08 51.3 4.8 64 16-79 2-70 (150)
12 PRK06893 DNA replication initi 96.4 0.0054 1.2E-07 54.4 5.5 87 216-305 93-195 (229)
13 PRK04841 transcriptional regul 96.4 0.025 5.4E-07 60.0 10.9 152 144-305 34-217 (903)
14 TIGR03015 pepcterm_ATPase puta 95.8 0.34 7.4E-06 43.5 14.1 128 177-306 82-231 (269)
15 PF10137 TIR-like: Predicted n 95.3 0.055 1.2E-06 43.3 6.1 60 16-78 1-61 (125)
16 PRK00411 cdc6 cell division co 94.9 0.57 1.2E-05 44.8 13.1 108 173-282 93-220 (394)
17 PF13173 AAA_14: AAA domain 94.6 0.072 1.6E-06 42.5 5.3 68 207-274 54-127 (128)
18 TIGR02928 orc1/cdc6 family rep 93.2 2.6 5.6E-05 39.7 13.8 132 173-305 82-238 (365)
19 PF01637 Arch_ATPase: Archaeal 91.7 0.63 1.4E-05 40.3 7.0 92 213-306 117-227 (234)
20 PF13401 AAA_22: AAA domain; P 91.4 0.79 1.7E-05 36.0 6.7 81 164-251 40-125 (131)
21 PRK13342 recombination factor 91.2 1.8 4E-05 41.8 10.2 91 212-305 90-188 (413)
22 PRK09087 hypothetical protein; 90.1 1.7 3.6E-05 38.5 8.2 66 216-283 89-167 (226)
23 PRK08727 hypothetical protein; 89.5 3.9 8.4E-05 36.2 10.1 70 215-284 94-177 (233)
24 TIGR01242 26Sp45 26S proteasom 89.3 2.4 5.2E-05 40.2 9.1 90 213-306 214-327 (364)
25 TIGR03420 DnaA_homol_Hda DnaA 87.7 1.5 3.4E-05 38.1 6.3 67 216-282 92-172 (226)
26 TIGR00678 holB DNA polymerase 87.4 4.1 9E-05 34.5 8.6 87 213-307 95-185 (188)
27 PRK06645 DNA polymerase III su 86.1 3.8 8.3E-05 40.7 8.6 92 212-305 126-221 (507)
28 PF13271 DUF4062: Domain of un 85.6 2.7 5.8E-05 30.8 5.6 67 16-83 1-68 (83)
29 PRK05564 DNA polymerase III su 85.0 2.8 6.2E-05 38.8 6.8 86 214-305 93-182 (313)
30 PRK12402 replication factor C 84.9 5.8 0.00012 36.7 8.9 89 214-305 125-218 (337)
31 PRK05642 DNA replication initi 84.7 3.6 7.7E-05 36.5 7.0 86 217-305 100-200 (234)
32 PRK07471 DNA polymerase III su 83.6 6.2 0.00013 37.6 8.5 87 213-305 140-230 (365)
33 PRK06620 hypothetical protein; 83.5 7.1 0.00015 34.1 8.3 68 215-283 86-161 (214)
34 cd01128 rho_factor Transcripti 83.4 0.8 1.7E-05 41.2 2.3 63 159-226 43-115 (249)
35 PLN03025 replication factor C 83.0 6.1 0.00013 36.7 8.1 90 213-305 98-192 (319)
36 PRK14963 DNA polymerase III su 82.8 8.3 0.00018 38.4 9.3 91 213-305 115-209 (504)
37 COG4916 Uncharacterized protei 81.7 1.4 3.1E-05 39.2 3.1 99 10-113 173-279 (329)
38 PRK08084 DNA replication initi 81.6 5.4 0.00012 35.4 6.9 69 216-284 99-182 (235)
39 PRK07003 DNA polymerase III su 80.9 5.6 0.00012 41.4 7.4 70 213-282 118-191 (830)
40 PF02463 SMC_N: RecF/RecN/SMC 80.0 1.9 4.2E-05 37.5 3.4 52 214-267 158-212 (220)
41 COG2909 MalT ATP-dependent tra 79.9 11 0.00023 39.6 9.0 112 163-282 66-207 (894)
42 PTZ00112 origin recognition co 79.6 37 0.0008 36.4 12.7 106 176-283 827-950 (1164)
43 PRK14961 DNA polymerase III su 78.9 12 0.00025 35.6 8.6 90 213-305 118-212 (363)
44 TIGR02397 dnaX_nterm DNA polym 77.5 12 0.00027 34.9 8.3 91 213-305 116-210 (355)
45 cd00561 CobA_CobO_BtuR ATP:cor 77.3 5.2 0.00011 33.4 5.0 64 205-268 85-154 (159)
46 PRK09112 DNA polymerase III su 76.3 14 0.0003 35.0 8.2 89 213-305 140-232 (351)
47 PRK08691 DNA polymerase III su 74.0 12 0.00027 38.6 7.6 91 213-305 118-212 (709)
48 TIGR00635 ruvB Holliday juncti 73.1 9.5 0.00021 34.9 6.2 93 206-307 100-195 (305)
49 PRK04195 replication factor C 72.7 16 0.00034 36.2 7.9 87 214-305 98-194 (482)
50 PRK00440 rfc replication facto 72.5 22 0.00047 32.5 8.5 88 215-305 103-195 (319)
51 COG2256 MGS1 ATPase related to 71.8 19 0.0004 34.7 7.7 93 210-305 100-204 (436)
52 TIGR02903 spore_lon_C ATP-depe 71.5 8.5 0.00018 39.4 5.9 81 203-283 281-367 (615)
53 PRK00080 ruvB Holliday junctio 71.4 15 0.00033 34.2 7.2 64 242-307 151-216 (328)
54 PRK12323 DNA polymerase III su 70.9 21 0.00046 36.7 8.3 92 212-305 122-217 (700)
55 COG1373 Predicted ATPase (AAA+ 70.3 9.8 0.00021 36.7 5.8 62 214-276 94-161 (398)
56 PRK14957 DNA polymerase III su 69.9 23 0.0005 35.7 8.4 71 212-282 117-191 (546)
57 PRK13341 recombination factor 69.8 18 0.00039 37.8 7.8 67 213-282 108-181 (725)
58 PRK14951 DNA polymerase III su 69.7 32 0.00069 35.2 9.4 70 213-282 123-196 (618)
59 PRK14949 DNA polymerase III su 68.8 20 0.00044 38.2 7.9 92 212-305 117-212 (944)
60 PRK14960 DNA polymerase III su 68.2 28 0.00061 35.9 8.6 91 213-305 117-211 (702)
61 PRK14970 DNA polymerase III su 68.1 28 0.0006 32.9 8.3 72 213-284 107-182 (367)
62 PRK14087 dnaA chromosomal repl 68.0 12 0.00027 36.6 6.0 69 215-283 207-289 (450)
63 PRK07994 DNA polymerase III su 66.9 33 0.00071 35.3 8.9 92 212-305 117-212 (647)
64 PRK09376 rho transcription ter 66.7 7.1 0.00015 37.6 3.9 64 158-225 195-267 (416)
65 PRK08451 DNA polymerase III su 66.4 35 0.00076 34.3 8.8 91 213-305 116-210 (535)
66 TIGR00767 rho transcription te 66.3 10 0.00022 36.6 4.9 65 158-226 194-267 (415)
67 PRK14962 DNA polymerase III su 65.8 29 0.00064 34.2 8.1 90 213-305 116-210 (472)
68 PRK14959 DNA polymerase III su 65.3 27 0.00059 35.7 7.9 91 212-305 117-212 (624)
69 cd00860 ThrRS_anticodon ThrRS 64.4 22 0.00047 25.7 5.5 60 15-78 2-61 (91)
70 COG1474 CDC6 Cdc6-related prot 64.0 1.4E+02 0.003 28.5 13.4 129 173-305 80-229 (366)
71 PRK04132 replication factor C 63.6 67 0.0014 34.2 10.6 88 215-305 631-723 (846)
72 PRK07940 DNA polymerase III su 63.5 33 0.00071 33.1 7.8 86 213-305 116-205 (394)
73 PRK03992 proteasome-activating 63.2 68 0.0015 30.7 10.0 73 213-285 223-318 (389)
74 PRK14956 DNA polymerase III su 63.0 50 0.0011 32.7 9.1 92 212-305 119-214 (484)
75 KOG0741 AAA+-type ATPase [Post 63.0 27 0.00059 34.9 7.0 73 209-281 593-685 (744)
76 PRK14086 dnaA chromosomal repl 62.3 67 0.0015 32.9 10.0 69 216-284 379-461 (617)
77 PRK06305 DNA polymerase III su 62.2 34 0.00074 33.5 7.9 90 213-305 120-214 (451)
78 TIGR02880 cbbX_cfxQ probable R 61.3 20 0.00044 32.7 5.8 68 215-282 122-208 (284)
79 cd00009 AAA The AAA+ (ATPases 61.1 17 0.00036 28.2 4.6 42 212-253 82-131 (151)
80 PHA02544 44 clamp loader, smal 61.0 1.1E+02 0.0023 28.0 10.7 67 213-279 99-170 (316)
81 KOG0989 Replication factor C, 59.5 18 0.00039 33.6 4.9 87 217-305 132-222 (346)
82 PF00308 Bac_DnaA: Bacterial d 59.2 12 0.00026 32.7 3.8 78 206-284 90-181 (219)
83 PRK05707 DNA polymerase III su 58.5 41 0.00088 31.5 7.4 67 215-281 107-177 (328)
84 PF05014 Nuc_deoxyrib_tr: Nucl 57.9 83 0.0018 24.0 8.1 66 28-94 13-87 (113)
85 PRK14955 DNA polymerase III su 57.9 26 0.00056 33.7 6.1 70 213-282 126-199 (397)
86 PRK14971 DNA polymerase III su 57.5 52 0.0011 33.7 8.4 69 214-282 121-193 (614)
87 TIGR00708 cobA cob(I)alamin ad 57.1 22 0.00048 30.1 4.8 66 204-269 86-157 (173)
88 TIGR00362 DnaA chromosomal rep 56.6 39 0.00084 32.5 7.1 68 216-283 201-282 (405)
89 PRK05986 cob(I)alamin adenolsy 56.6 24 0.00053 30.3 5.0 66 204-269 104-175 (191)
90 COG4271 Predicted nucleotide-b 55.9 36 0.00077 29.4 5.8 64 11-79 80-145 (233)
91 PRK07414 cob(I)yrinic acid a,c 55.7 28 0.00061 29.6 5.2 63 205-267 105-173 (178)
92 TIGR02881 spore_V_K stage V sp 55.3 1.3E+02 0.0029 26.8 10.0 67 215-283 106-192 (261)
93 PRK14969 DNA polymerase III su 53.8 39 0.00084 33.9 6.8 70 213-282 118-191 (527)
94 PRK14964 DNA polymerase III su 53.1 63 0.0014 32.1 8.0 71 213-283 115-189 (491)
95 PRK09111 DNA polymerase III su 52.7 63 0.0014 33.0 8.1 90 213-305 131-225 (598)
96 PRK14954 DNA polymerase III su 52.4 1.1E+02 0.0024 31.4 9.8 70 213-282 126-199 (620)
97 PRK08903 DnaA regulatory inact 51.9 1.6E+02 0.0034 25.5 10.0 67 215-281 91-169 (227)
98 PRK07764 DNA polymerase III su 51.3 55 0.0012 34.8 7.6 71 212-282 118-192 (824)
99 PF03129 HGTP_anticodon: Antic 51.2 36 0.00078 24.9 4.8 44 28-74 15-59 (94)
100 cd02042 ParA ParA and ParB of 50.2 43 0.00093 24.9 5.1 64 17-80 3-74 (104)
101 PRK14088 dnaA chromosomal repl 48.7 1.6E+02 0.0035 28.7 10.0 71 213-283 193-277 (440)
102 PTZ00454 26S protease regulato 48.5 1.5E+02 0.0031 28.7 9.5 71 212-282 236-329 (398)
103 PRK14950 DNA polymerase III su 47.5 88 0.0019 31.8 8.3 90 213-305 119-213 (585)
104 COG0400 Predicted esterase [Ge 47.2 61 0.0013 28.2 6.2 57 10-67 142-200 (207)
105 cd00738 HGTP_anticodon HGTP an 46.4 61 0.0013 23.4 5.4 61 15-78 2-64 (94)
106 PRK06647 DNA polymerase III su 46.4 1.5E+02 0.0033 30.0 9.7 72 212-283 117-192 (563)
107 PRK00149 dnaA chromosomal repl 46.2 46 0.001 32.5 5.9 69 215-283 212-294 (450)
108 PRK14958 DNA polymerase III su 45.5 92 0.002 31.1 7.9 69 213-281 118-190 (509)
109 CHL00181 cbbX CbbX; Provisiona 45.3 1.9E+02 0.004 26.5 9.4 70 215-284 123-211 (287)
110 COG3899 Predicted ATPase [Gene 45.2 1.1E+02 0.0024 32.7 8.8 111 205-322 144-267 (849)
111 PRK07133 DNA polymerase III su 45.2 95 0.0021 32.5 8.1 91 213-305 117-211 (725)
112 cd00858 GlyRS_anticodon GlyRS 44.8 58 0.0012 25.4 5.2 61 14-79 26-88 (121)
113 PRK07399 DNA polymerase III su 44.7 1.1E+02 0.0024 28.4 7.9 69 213-282 123-195 (314)
114 COG2109 BtuR ATP:corrinoid ade 44.3 38 0.00082 29.2 4.2 50 204-253 111-166 (198)
115 PRK14952 DNA polymerase III su 44.2 1.7E+02 0.0036 29.9 9.5 91 213-305 117-211 (584)
116 PF14258 DUF4350: Domain of un 42.3 1.1E+02 0.0024 21.0 6.9 60 32-103 8-67 (70)
117 PF02572 CobA_CobO_BtuR: ATP:c 40.9 38 0.00083 28.6 3.8 64 204-269 85-156 (172)
118 CHL00176 ftsH cell division pr 40.2 2.6E+02 0.0057 28.8 10.3 77 207-283 268-367 (638)
119 TIGR01241 FtsH_fam ATP-depende 39.9 1.2E+02 0.0026 30.0 7.8 73 211-283 144-239 (495)
120 PF07693 KAP_NTPase: KAP famil 38.8 2E+02 0.0044 26.1 8.8 76 204-281 160-262 (325)
121 KOG2543 Origin recognition com 38.7 45 0.00097 32.0 4.1 109 164-280 58-191 (438)
122 PRK08116 hypothetical protein; 38.2 22 0.00047 32.2 2.1 44 208-252 173-221 (268)
123 PRK14953 DNA polymerase III su 37.9 1.5E+02 0.0032 29.5 8.0 70 213-282 118-191 (486)
124 PRK05896 DNA polymerase III su 37.8 1.2E+02 0.0026 31.1 7.3 88 215-305 120-212 (605)
125 PRK08769 DNA polymerase III su 37.8 1.3E+02 0.0029 28.0 7.2 85 213-305 112-200 (319)
126 TIGR00611 recf recF protein. A 37.6 62 0.0014 30.7 5.1 43 212-256 300-345 (365)
127 PF05621 TniB: Bacterial TniB 37.3 3.4E+02 0.0074 25.1 10.2 138 163-308 97-256 (302)
128 PRK12422 chromosomal replicati 37.2 53 0.0012 32.2 4.7 69 215-283 203-285 (445)
129 PF11074 DUF2779: Domain of un 36.9 25 0.00054 28.2 2.0 34 57-92 60-93 (130)
130 PF13177 DNA_pol3_delta2: DNA 36.4 36 0.00077 28.2 2.9 57 214-270 102-162 (162)
131 PRK07413 hypothetical protein; 36.1 69 0.0015 30.7 5.1 64 204-269 294-366 (382)
132 TIGR03689 pup_AAA proteasome A 35.5 1.1E+02 0.0025 30.5 6.7 70 213-282 288-378 (512)
133 cd00861 ProRS_anticodon_short 35.3 84 0.0018 22.7 4.6 48 28-78 17-64 (94)
134 PF02310 B12-binding: B12 bind 35.3 2E+02 0.0043 21.8 7.7 74 31-112 17-91 (121)
135 PRK06964 DNA polymerase III su 35.1 1.3E+02 0.0029 28.3 6.9 69 213-281 131-203 (342)
136 PRK14948 DNA polymerase III su 34.5 2.3E+02 0.0051 29.1 9.0 90 213-305 120-214 (620)
137 PF04665 Pox_A32: Poxvirus A32 34.2 1.7E+02 0.0037 26.1 7.0 11 215-225 99-109 (241)
138 PRK08058 DNA polymerase III su 33.6 1.3E+02 0.0029 27.9 6.6 69 213-281 109-181 (329)
139 PRK08350 hypothetical protein; 33.3 39 0.00084 31.7 2.9 33 12-44 279-311 (341)
140 PRK06871 DNA polymerase III su 32.7 2.8E+02 0.0061 25.9 8.5 70 213-282 106-179 (325)
141 PRK07413 hypothetical protein; 32.6 85 0.0018 30.1 5.1 50 204-253 114-169 (382)
142 PF08069 Ribosomal_S13_N: Ribo 32.5 29 0.00063 23.9 1.4 31 291-321 29-59 (60)
143 PRK09162 hypoxanthine-guanine 31.7 44 0.00095 28.3 2.8 31 211-242 95-126 (181)
144 PRK05563 DNA polymerase III su 31.5 2.8E+02 0.0062 28.0 8.9 91 213-305 118-212 (559)
145 PF02562 PhoH: PhoH-like prote 31.3 67 0.0014 27.9 3.9 36 215-253 120-157 (205)
146 COG0710 AroD 3-dehydroquinate 31.0 1.7E+02 0.0036 26.1 6.3 69 28-100 78-146 (231)
147 cd03247 ABCC_cytochrome_bd The 30.8 1.3E+02 0.0029 24.8 5.6 60 206-267 108-170 (178)
148 cd03244 ABCC_MRP_domain2 Domai 30.1 1.3E+02 0.0028 25.8 5.6 60 206-267 149-211 (221)
149 PRK10536 hypothetical protein; 29.6 56 0.0012 29.6 3.2 41 210-253 169-214 (262)
150 KOG2792 Putative cytochrome C 29.5 51 0.0011 29.7 2.8 30 84-113 154-187 (280)
151 PF03720 UDPG_MGDP_dh_C: UDP-g 29.2 77 0.0017 24.1 3.5 53 24-76 12-75 (106)
152 PF07429 Glyco_transf_56: 4-al 29.1 56 0.0012 30.9 3.2 49 33-82 299-348 (360)
153 COG0593 DnaA ATPase involved i 29.1 1.2E+02 0.0027 29.3 5.6 69 216-284 177-259 (408)
154 PRK13883 conjugal transfer pro 29.0 56 0.0012 27.0 2.8 32 15-49 53-84 (151)
155 PF13304 AAA_21: AAA domain; P 28.8 50 0.0011 28.1 2.7 40 216-255 259-302 (303)
156 COG4032 Predicted thiamine-pyr 28.6 45 0.00097 27.3 2.1 65 17-81 97-167 (172)
157 COG0396 sufC Cysteine desulfur 28.2 1.6E+02 0.0034 26.4 5.6 63 204-266 152-218 (251)
158 PRK14965 DNA polymerase III su 28.0 2.2E+02 0.0049 28.9 7.5 69 213-281 118-190 (576)
159 PF00004 AAA: ATPase family as 27.9 2E+02 0.0044 21.7 5.9 11 214-224 58-68 (132)
160 cd03253 ABCC_ATM1_transporter 27.3 1.7E+02 0.0038 25.3 6.0 60 205-266 146-208 (236)
161 cd03228 ABCC_MRP_Like The MRP 27.0 1.8E+02 0.004 23.8 5.8 58 207-266 107-167 (171)
162 PF00875 DNA_photolyase: DNA p 26.6 2.5E+02 0.0054 22.9 6.5 92 31-129 55-148 (165)
163 cd03240 ABC_Rad50 The catalyti 26.2 1.1E+02 0.0024 26.2 4.4 60 207-268 132-197 (204)
164 PRK06090 DNA polymerase III su 25.6 3.7E+02 0.0081 25.0 8.0 68 214-281 108-179 (319)
165 PRK06921 hypothetical protein; 25.3 49 0.0011 29.9 2.1 37 214-250 177-223 (266)
166 cd03249 ABC_MTABC3_MDL1_MDL2 M 25.1 1.9E+02 0.0042 25.1 5.9 60 206-267 149-211 (238)
167 PRK08181 transposase; Validate 24.7 45 0.00098 30.3 1.7 37 215-252 168-209 (269)
168 PRK09194 prolyl-tRNA synthetas 24.7 1.2E+02 0.0027 30.6 5.1 61 13-78 467-531 (565)
169 PRK11081 tRNA guanosine-2'-O-m 24.6 94 0.002 27.5 3.7 44 205-248 7-52 (229)
170 cd03369 ABCC_NFT1 Domain 2 of 24.5 2E+02 0.0043 24.4 5.7 60 206-267 135-197 (207)
171 cd03251 ABCC_MsbA MsbA is an e 23.9 2E+02 0.0043 24.9 5.7 59 206-266 148-209 (234)
172 cd01424 MGS_CPS_II Methylglyox 23.9 2.1E+02 0.0045 21.6 5.1 29 17-47 3-31 (110)
173 TIGR01128 holA DNA polymerase 23.6 5.3E+02 0.012 23.0 9.6 71 212-282 44-124 (302)
174 TIGR01093 aroD 3-dehydroquinat 23.6 3.6E+02 0.0077 23.5 7.2 74 31-106 81-154 (228)
175 cd03227 ABC_Class2 ABC-type Cl 23.4 1.4E+02 0.0031 24.3 4.4 53 214-268 99-155 (162)
176 PRK07132 DNA polymerase III su 23.1 2.8E+02 0.006 25.6 6.6 69 213-281 89-161 (299)
177 TIGR00418 thrS threonyl-tRNA s 23.1 1.6E+02 0.0035 29.6 5.5 61 13-77 469-529 (563)
178 PTZ00361 26 proteosome regulat 23.0 1.3E+02 0.0028 29.5 4.6 73 212-284 274-369 (438)
179 cd03252 ABCC_Hemolysin The ABC 22.9 2.1E+02 0.0045 24.8 5.6 59 206-266 148-209 (237)
180 PF14359 DUF4406: Domain of un 22.2 2.5E+02 0.0054 20.9 5.1 65 27-94 15-84 (92)
181 cd03216 ABC_Carb_Monos_I This 21.9 2E+02 0.0043 23.5 5.0 60 206-266 92-155 (163)
182 PF11814 DUF3335: Peptidase_C3 21.8 2.5E+02 0.0054 24.5 5.6 88 134-223 33-138 (207)
183 PRK10733 hflB ATP-dependent me 21.8 4.9E+02 0.011 26.8 8.7 72 212-283 242-336 (644)
184 cd03254 ABCC_Glucan_exporter_l 21.6 2.4E+02 0.0052 24.2 5.7 60 205-266 148-210 (229)
185 TIGR03346 chaperone_ClpB ATP-d 21.5 7.5E+02 0.016 26.5 10.3 45 207-251 659-717 (852)
186 COG0148 Eno Enolase [Carbohydr 21.4 86 0.0019 30.1 2.9 43 12-57 353-395 (423)
187 cd02426 Pol_gamma_b_Cterm C-te 21.0 68 0.0015 25.5 1.9 23 27-49 42-64 (128)
188 PRK13539 cytochrome c biogenes 20.8 1.9E+02 0.0041 24.6 4.8 60 206-268 137-200 (207)
189 PRK07993 DNA polymerase III su 20.7 2.8E+02 0.0062 25.9 6.3 86 213-305 107-196 (334)
190 CHL00195 ycf46 Ycf46; Provisio 20.4 4.6E+02 0.01 26.1 7.9 72 213-284 317-407 (489)
191 PRK14249 phosphate ABC transpo 20.4 2.1E+02 0.0045 25.2 5.1 61 205-266 156-219 (251)
192 cd03300 ABC_PotA_N PotA is an 20.3 1.4E+02 0.0031 25.9 4.0 60 206-266 140-204 (232)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3e-64 Score=536.04 Aligned_cols=298 Identities=37% Similarity=0.617 Sum_probs=262.5
Q ss_pred CCCCCCCCCCCCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCcc
Q 038521 1 MASSSSPPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYA 80 (324)
Q Consensus 1 ~~~~s~~~~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 80 (324)
||+|||+ ++.++|||||||||+|||++|++||+++|.++||++|+|+++++|+.|++++.+||++|+++|||||+||+
T Consensus 1 ~~~~~~~--~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSSSS--SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCCCC--CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 5554444 35789999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHhcCCeEEeEEEeecccccccccccchhhhhHhhhcC-hhhHHhHHHHhhhhhhhcCccccc--
Q 038521 81 SSKWCLDELLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERF-PYKTRNWRSALTEAANLSGFDSRV-- 157 (324)
Q Consensus 81 ~s~wcl~El~~i~~~~~~~~~~viPvfy~v~psdvr~q~g~~~~~~~~~~~~~-~e~v~~w~~al~~v~~~~G~~~~~-- 157 (324)
+|.|||+||++|++|++..++.|+||||+|+|+|||+|+|.|+++|.+++.+. .+++++||+||+++++++|++...
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~ 158 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWP 158 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCC
Confidence 99999999999999999999999999999999999999999999999988764 478999999999999999988653
Q ss_pred -------------------------------------------------------------------------cccccce
Q 038521 158 -------------------------------------------------------------------------IRHFQGS 164 (324)
Q Consensus 158 -------------------------------------------------------------------------~~~F~~~ 164 (324)
..+|++.
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~ 238 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence 6789999
Q ss_pred eeeecc--cc---ccc-----cCC-HHHHHHHHHHhhhcC-C-CCccchhccHHHHHHHhcCCCcEEEEecCCCHHHHHH
Q 038521 165 YFAHNV--RS---AEE-----TGR-LDDLRKELLSKLLND-W-NVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQIEL 231 (324)
Q Consensus 165 ~wv~~v--~~---vs~-----~~~-~~~l~~~il~~l~~~-~-~~~~~~~~~~~~l~~~L~~kr~LlVLDDV~~~~~~~~ 231 (324)
+|+.+. +. ..+ .++ ...++++++.++... . ... ....++++|++||+||||||||+..+|+.
T Consensus 239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~-----~~~~~~~~L~~krvLLVLDdv~~~~~l~~ 313 (1153)
T PLN03210 239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY-----HLGAMEERLKHRKVLIFIDDLDDQDVLDA 313 (1153)
T ss_pred EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC-----CHHHHHHHHhCCeEEEEEeCCCCHHHHHH
Confidence 888642 11 111 111 245677777777655 2 211 12457889999999999999999999999
Q ss_pred HHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEeccCChhhHHHHHHHhhcCCCCCChhHHHHHHHHHHHccc
Q 038521 232 LIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 232 l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
+.+...|+++|||||||||+++++..++++++|+|+.|+++|||+||+++||++..+++++++++++|+++|+|
T Consensus 314 L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~G 387 (1153)
T PLN03210 314 LAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGN 387 (1153)
T ss_pred HHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCC
Confidence 99988999999999999999999998888899999999999999999999999888888999999999999999
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=293.81 Aligned_cols=133 Identities=33% Similarity=0.565 Sum_probs=122.5
Q ss_pred CCCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHH
Q 038521 10 NDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDE 88 (324)
Q Consensus 10 ~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~E 88 (324)
+.+.+|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.+.|.+||++|+++|+|||+||++|+|||+|
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 3457899999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEeEEEeecccccccc-cccchhhhhHhhhcChhhHHhHHHHhhhhhhhcCcccc
Q 038521 89 LLKILECKRNYGQIVIPVFYRVDPSRVRKQ-IGSFGDSFFILKERFPYKTRNWRSALTEAANLSGFDSR 156 (324)
Q Consensus 89 l~~i~~~~~~~~~~viPvfy~v~psdvr~q-~g~~~~~~~~~~~~~~e~v~~w~~al~~v~~~~G~~~~ 156 (324)
|++|+++. ..|+||||+|+|+|||+| .|. ...+++++||.||+++++++|+...
T Consensus 102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~~ 156 (187)
T PLN03194 102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTFD 156 (187)
T ss_pred HHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccCC
Confidence 99999864 589999999999999997 433 1357899999999999999998644
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.91 E-value=5.2e-25 Score=226.72 Aligned_cols=172 Identities=15% Similarity=0.139 Sum_probs=150.3
Q ss_pred hhhhhhhcCccccc------------cccccceeeeeccccccccCCHHHHHHHHHHhhhcC-C--CCccchhccHHHHH
Q 038521 144 LTEAANLSGFDSRV------------IRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND-W--NVRNFQNINVNFQS 208 (324)
Q Consensus 144 l~~v~~~~G~~~~~------------~~~F~~~~wv~~v~~vs~~~~~~~l~~~il~~l~~~-~--~~~~~~~~~~~~l~ 208 (324)
...+.||+|.++++ ..+|+..+||. ||++++..+++++|+..+... . .....++ .+..|.
T Consensus 181 iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~-~~~~i~ 255 (889)
T KOG4658|consen 181 IVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEEWEDKEEDE-LASKLL 255 (889)
T ss_pred EEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCcccchhhHHH-HHHHHH
Confidence 34667788888887 78999999999 999999999999999998774 2 2223356 889999
Q ss_pred HHhcCCCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhh-cCCcceEEeccCChhhHHHHHHHhhcCCC-
Q 038521 209 KRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTN-CEIDHIYQMKELVHANALKLFTQCAFRRD- 286 (324)
Q Consensus 209 ~~L~~kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~-~~~~~~~~v~~L~~~es~~LF~~~af~~~- 286 (324)
+.|.+|||||||||||+..+|+.+..++|....||+|++|||++.|+.. +++...+++++|+++|||.||++.||...
T Consensus 256 ~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~ 335 (889)
T KOG4658|consen 256 NLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL 335 (889)
T ss_pred HHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc
Confidence 9999999999999999999999999999988899999999999999998 88889999999999999999999999864
Q ss_pred CCChhHHHHHHHHHHHccc-cccCCchHHHHHhhh
Q 038521 287 HLDAGYTALAHKAFSTRTQ-VIQTSPWPKILRLCY 320 (324)
Q Consensus 287 ~~~~~~~~l~~~iv~~c~G-ll~~~~~~~il~~cy 320 (324)
...+.++++|++++++|+| +++.+.+|..|+..|
T Consensus 336 ~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~ 370 (889)
T KOG4658|consen 336 GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKK 370 (889)
T ss_pred cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCC
Confidence 4445699999999999999 777787777766543
No 4
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.87 E-value=2.9e-23 Score=170.82 Aligned_cols=129 Identities=34% Similarity=0.575 Sum_probs=112.5
Q ss_pred EEecCccccCCCchHHHHHHHHhcC--CceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHH
Q 038521 17 VFVSFRGEDTRDNFTSHLFSALFQN--NIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKIL 93 (324)
Q Consensus 17 vFis~~g~D~~~~f~~~L~~~L~~~--g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~ 93 (324)
|||||++.+++..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++||++|+|||+||+.|+||+.||..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999655788999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--CeEEeEEEeecccccc-cccccchhhhhHhhhcCh-----hhHHhHHHHhh
Q 038521 94 ECKRNYG--QIVIPVFYRVDPSRVR-KQIGSFGDSFFILKERFP-----YKTRNWRSALT 145 (324)
Q Consensus 94 ~~~~~~~--~~viPvfy~v~psdvr-~q~g~~~~~~~~~~~~~~-----e~v~~w~~al~ 145 (324)
++....+ ..|+|+||++.+++++ .+.+.++..+........ .....|+.++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9986544 8999999999999999 789988888877665433 35788887754
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.86 E-value=3.8e-22 Score=182.74 Aligned_cols=166 Identities=21% Similarity=0.329 Sum_probs=127.6
Q ss_pred hhhhhcCccccc-----------cccccceeeeeccccccccCCHHHHHHHHHHhhhcC-C---CCccchhccHHHHHHH
Q 038521 146 EAANLSGFDSRV-----------IRHFQGSYFAHNVRSAEETGRLDDLRKELLSKLLND-W---NVRNFQNINVNFQSKR 210 (324)
Q Consensus 146 ~v~~~~G~~~~~-----------~~~F~~~~wv~~v~~vs~~~~~~~l~~~il~~l~~~-~---~~~~~~~~~~~~l~~~ 210 (324)
.+.|++|.|++. +.+|+.++|+. ++...+...+++.|+.++... . ...+.+. ....+++.
T Consensus 23 ~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l~~~ 97 (287)
T PF00931_consen 23 AIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQLREL 97 (287)
T ss_dssp EEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHHHHH
T ss_pred EEEcCCcCCcceeeeecccccccccccccccccc----ccccccccccccccccccccccccccccccccc-ccccchhh
Confidence 466788888876 78899999999 888888899999999999776 3 2345566 78999999
Q ss_pred hcCCCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCC-cceEEeccCChhhHHHHHHHhhcCCC-CC
Q 038521 211 LAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEI-DHIYQMKELVHANALKLFTQCAFRRD-HL 288 (324)
Q Consensus 211 L~~kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~-~~~~~v~~L~~~es~~LF~~~af~~~-~~ 288 (324)
|.++++||||||||+..+|+.+...++.+..||+||||||+..++..++. ...|+|++|+.+||++||++.++... ..
T Consensus 98 L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 177 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESES 177 (287)
T ss_dssp HCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS---
T ss_pred hccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999998888888889999999999999887754 67899999999999999999998765 34
Q ss_pred ChhHHHHHHHHHHHccc-cccCCchHHHH
Q 038521 289 DAGYTALAHKAFSTRTQ-VIQTSPWPKIL 316 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G-ll~~~~~~~il 316 (324)
++.+.+++++|+++|+| +++....++.|
T Consensus 178 ~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 178 PEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp -TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccc
Confidence 45667889999999999 45554455544
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.85 E-value=5.4e-21 Score=156.65 Aligned_cols=134 Identities=41% Similarity=0.644 Sum_probs=112.5
Q ss_pred CccEEecCcc-ccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHH
Q 038521 14 MHDVFVSFRG-EDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKI 92 (324)
Q Consensus 14 ~~dvFis~~g-~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i 92 (324)
.|||||||++ +++.+.|+.+|..+|...|+.+|.|+....|.. ..+|.++|++|+++|+|+|++|..|+||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~-~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGD-LEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccch-HHHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 567789999999999999999999984333333 34999999999999999999999999999999999
Q ss_pred HHHHHh-cCCeEEeEEEeecccccccccccchhhhhHhhhcChhhH--HhHHHHhhhhh
Q 038521 93 LECKRN-YGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFPYKT--RNWRSALTEAA 148 (324)
Q Consensus 93 ~~~~~~-~~~~viPvfy~v~psdvr~q~g~~~~~~~~~~~~~~e~v--~~w~~al~~v~ 148 (324)
.+.... ....|+||+++..|.++..+.+.+..++..+..+..+.. ..|+..+..+.
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 987744 668999999998888899999999999887644444443 58988877664
No 7
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.58 E-value=9.9e-16 Score=118.71 Aligned_cols=87 Identities=33% Similarity=0.567 Sum_probs=74.9
Q ss_pred EEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHHHH
Q 038521 17 VFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECK 96 (324)
Q Consensus 17 vFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~ 96 (324)
|||||++.| ..++..|...|+..|+++|+|.++..|+.+.+.+.++|++|+..|+++|++|..|+||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 569999999999999999999888899999999999999999999999999999999999988873
Q ss_pred HhcCCeEEeEEEe
Q 038521 97 RNYGQIVIPVFYR 109 (324)
Q Consensus 97 ~~~~~~viPvfy~ 109 (324)
+.+..|+||..+
T Consensus 76 -~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 -KRGKPIIPVRLD 87 (102)
T ss_dssp -CTSESEEEEECS
T ss_pred -HCCCEEEEEEEC
Confidence 345689999954
No 8
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.97 E-value=1.1e-09 Score=102.94 Aligned_cols=93 Identities=29% Similarity=0.427 Sum_probs=81.2
Q ss_pred CCCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCcc--------
Q 038521 10 NDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYA-------- 80 (324)
Q Consensus 10 ~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~-------- 80 (324)
+..++.|||||||.. +.+.+++.+.-.|+.+|+++|+|. .+..|+ +...+++.|+.++.+|.|+|||..
T Consensus 608 ~~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~n 685 (832)
T KOG3678|consen 608 MLSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN 685 (832)
T ss_pred cccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence 346789999999998 578899999999999999999998 888886 668999999999999999999954
Q ss_pred CchhhHHHHHHHHHHHHhcCCeEEeEEE
Q 038521 81 SSKWCLDELLKILECKRNYGQIVIPVFY 108 (324)
Q Consensus 81 ~s~wcl~El~~i~~~~~~~~~~viPvfy 108 (324)
+-.|...||....++. .+++|||-
T Consensus 686 CeDWVHKEl~~Afe~~----KNIiPI~D 709 (832)
T KOG3678|consen 686 CEDWVHKELKCAFEHQ----KNIIPIFD 709 (832)
T ss_pred HHHHHHHHHHHHHHhc----CCeeeeec
Confidence 3458889999988886 68999983
No 9
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.00 E-value=1.2e-05 Score=64.96 Aligned_cols=90 Identities=23% Similarity=0.350 Sum_probs=45.5
Q ss_pred ccEEecCccccCCCchHHHHHHHHhcC-------CceE----------EEeC-CCCCcccchHHHHHHHhhcceEEEEEe
Q 038521 15 HDVFVSFRGEDTRDNFTSHLFSALFQN-------NIET----------FIDN-DLKRGDEISESLLGTIEASTISIIIFS 76 (324)
Q Consensus 15 ~dvFis~~g~D~~~~f~~~L~~~L~~~-------g~~~----------f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S 76 (324)
|.|||||+..|.. .....|..-+... ++.. +.+. +....+.|...|.++|.+|.++||+.|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999833 2566666666552 2211 1122 222344788999999999999999999
Q ss_pred cCccCchhhHHHHHHHHHHHHhcCCeEEeEEEe
Q 038521 77 EKYASSKWCLDELLKILECKRNYGQIVIPVFYR 109 (324)
Q Consensus 77 ~~y~~s~wcl~El~~i~~~~~~~~~~viPvfy~ 109 (324)
++...|.|+-.|+...++ .+..|+-|-.+
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~~ 108 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYLP 108 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEETT
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEECC
Confidence 999999999999988765 34566666543
No 10
>PF05729 NACHT: NACHT domain
Probab=97.14 E-value=0.0019 Score=53.35 Aligned_cols=70 Identities=16% Similarity=0.333 Sum_probs=48.9
Q ss_pred cCCCcEEEEecCCCHHH---------HHH-HHhcCCC-CCCCCeEEEEcCCchh---hhhcCCcceEEeccCChhhHHHH
Q 038521 212 AREKVLIVFDDVNHPRQ---------IEL-LIGRLDR-FASGSRVIITARDKQV---LTNCEIDHIYQMKELVHANALKL 277 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~~~---------~~~-l~~~~~~-~~~GSrIIiTTR~~~v---~~~~~~~~~~~v~~L~~~es~~L 277 (324)
..+++|||||++++... +.. +...++. ..++.++|||+|.... .........+++++|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56899999999985432 222 2222222 3568999999998876 22333446899999999999998
Q ss_pred HHHh
Q 038521 278 FTQC 281 (324)
Q Consensus 278 F~~~ 281 (324)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8654
No 11
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.52 E-value=0.004 Score=51.31 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=51.4
Q ss_pred cEEecCccccCC-CchHHHHHHHHhcC-CceEEEeC-CCCC--cccchHHHHHHHhhcceEEEEEecCc
Q 038521 16 DVFVSFRGEDTR-DNFTSHLFSALFQN-NIETFIDN-DLKR--GDEISESLLGTIEASTISIIIFSEKY 79 (324)
Q Consensus 16 dvFis~~g~D~~-~~f~~~L~~~L~~~-g~~~f~d~-~~~~--g~~~~~~~~~~i~~s~~~i~v~S~~y 79 (324)
-|||||+..... .+.|-.|...|+.. |+.|.+|. +... +.....=+.+.++++...|+|.|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 399999985532 46799999999999 99999998 6633 44555677888999999999999654
No 12
>PRK06893 DNA replication initiation factor; Validated
Probab=96.44 E-value=0.0054 Score=54.43 Aligned_cols=87 Identities=17% Similarity=0.380 Sum_probs=54.2
Q ss_pred cEEEEecCCCH---HHHH-HHHhcCCCC-CCCCeEEEEcCC----------chhhhhcCCcceEEeccCChhhHHHHHHH
Q 038521 216 VLIVFDDVNHP---RQIE-LLIGRLDRF-ASGSRVIITARD----------KQVLTNCEIDHIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 216 ~LlVLDDV~~~---~~~~-~l~~~~~~~-~~GSrIIiTTR~----------~~v~~~~~~~~~~~v~~L~~~es~~LF~~ 280 (324)
-+|+|||++.. .+|+ .+...++.. ..|+++||+|.+ +.+...++...+++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 58999999853 4454 233323221 246666555443 35555555567899999999999999999
Q ss_pred hhcCCC-CCChhHHHHHHHHHHHccc
Q 038521 281 CAFRRD-HLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 281 ~af~~~-~~~~~~~~l~~~iv~~c~G 305 (324)
+++... ..+ .+...-+++.+.|
T Consensus 173 ~a~~~~l~l~---~~v~~~L~~~~~~ 195 (229)
T PRK06893 173 NAYQRGIELS---DEVANFLLKRLDR 195 (229)
T ss_pred HHHHcCCCCC---HHHHHHHHHhccC
Confidence 997543 222 2333344555544
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.37 E-value=0.025 Score=59.97 Aligned_cols=152 Identities=13% Similarity=0.126 Sum_probs=86.8
Q ss_pred hhhhhhhcCccccc-----cccccceeeeeccccccc-cCCHHHHHHHHHHhhhcC-CC----C---------ccchhcc
Q 038521 144 LTEAANLSGFDSRV-----IRHFQGSYFAHNVRSAEE-TGRLDDLRKELLSKLLND-WN----V---------RNFQNIN 203 (324)
Q Consensus 144 l~~v~~~~G~~~~~-----~~~F~~~~wv~~v~~vs~-~~~~~~l~~~il~~l~~~-~~----~---------~~~~~~~ 203 (324)
++-|..-.|+++++ ..++...+|++ +.. +.++..+...++..+... .. . .+... .
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~~~~w~~----l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 108 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKNNLGWYS----LDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSS-L 108 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCeEEEe----cCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHH-H
Confidence 55667778888887 23344688998 754 446666767777766422 11 0 11111 1
Q ss_pred HHHHHHHhc--CCCcEEEEecCCCH---HHHHHHHhcCCCCCCCCeEEEEcCCchhhhh--cC-CcceEEec----cCCh
Q 038521 204 VNFQSKRLA--REKVLIVFDDVNHP---RQIELLIGRLDRFASGSRVIITARDKQVLTN--CE-IDHIYQMK----ELVH 271 (324)
Q Consensus 204 ~~~l~~~L~--~kr~LlVLDDV~~~---~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~--~~-~~~~~~v~----~L~~ 271 (324)
...+-..+. +.+++|||||+... ...+.+...++...++-++|||||...-+.. .. .....++. +|+.
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~ 188 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDH 188 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCH
Confidence 222222332 67899999999643 2222333333333467789999998432211 11 12345565 8999
Q ss_pred hhHHHHHHHhhcCCCCCChhHHHHHHHHHHHccc
Q 038521 272 ANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 272 ~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
+|+.+||...... . .+ .+...++.+.|+|
T Consensus 189 ~e~~~ll~~~~~~-~-~~---~~~~~~l~~~t~G 217 (903)
T PRK04841 189 QEAQQFFDQRLSS-P-IE---AAESSRLCDDVEG 217 (903)
T ss_pred HHHHHHHHhccCC-C-CC---HHHHHHHHHHhCC
Confidence 9999999765421 1 12 1334567778887
No 14
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.80 E-value=0.34 Score=43.53 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHHhhhcC-CCCccc---hhccHHHHHHH-hcCCCcEEEEecCCCH--HHHHHHHhcCCC---CCCCCeEE
Q 038521 177 GRLDDLRKELLSKLLND-WNVRNF---QNINVNFQSKR-LAREKVLIVFDDVNHP--RQIELLIGRLDR---FASGSRVI 246 (324)
Q Consensus 177 ~~~~~l~~~il~~l~~~-~~~~~~---~~~~~~~l~~~-L~~kr~LlVLDDV~~~--~~~~~l~~~~~~---~~~GSrII 246 (324)
.+..++++.|+..+... ...... .. +...+... ..+++++||+||++.. ..++.+...... ......|+
T Consensus 82 ~~~~~~l~~i~~~lG~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vv 160 (269)
T TIGR03015 82 VDAEDLLRMVAADFGLETEGRDKAALLRE-LEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIF 160 (269)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCHHHHHHH-HHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEE
Confidence 45667888888776433 211111 11 22222222 3678899999999864 456665433221 12223455
Q ss_pred EEcCCchhhhhc----------CCcceEEeccCChhhHHHHHHHhhcCCC-CCChhH-HHHHHHHHHHcccc
Q 038521 247 ITARDKQVLTNC----------EIDHIYQMKELVHANALKLFTQCAFRRD-HLDAGY-TALAHKAFSTRTQV 306 (324)
Q Consensus 247 iTTR~~~v~~~~----------~~~~~~~v~~L~~~es~~LF~~~af~~~-~~~~~~-~~l~~~iv~~c~Gl 306 (324)
+|.... ..... .....+++++|+.+|..+++...+-... .....+ .+..+.|.+.|+|.
T Consensus 161 l~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~ 231 (269)
T TIGR03015 161 LVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI 231 (269)
T ss_pred EcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc
Confidence 665432 21111 1134678999999999998887663222 111122 46778899999983
No 15
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.30 E-value=0.055 Score=43.26 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=50.5
Q ss_pred cEEecCccccCCCchHHHHHHHHhcCCceEEEe-CCCCCcccchHHHHHHHhhcceEEEEEecC
Q 038521 16 DVFVSFRGEDTRDNFTSHLFSALFQNNIETFID-NDLKRGDEISESLLGTIEASTISIIIFSEK 78 (324)
Q Consensus 16 dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d-~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 78 (324)
.|||.|. .| ......+...|+..|+.+.+= +....|..+.+.+.+...++..+|++++|.
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899987 55 457888999998889887664 366889999999999999999999999985
No 16
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.89 E-value=0.57 Score=44.75 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=67.0
Q ss_pred ccccCCHHHHHHHHHHhhhcC--C-CCccchhccHHHHHHHhc--CCCcEEEEecCCCHH------HHHHHHhcCCCCCC
Q 038521 173 AEETGRLDDLRKELLSKLLND--W-NVRNFQNINVNFQSKRLA--REKVLIVFDDVNHPR------QIELLIGRLDRFAS 241 (324)
Q Consensus 173 vs~~~~~~~l~~~il~~l~~~--~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDDV~~~~------~~~~l~~~~~~~~~ 241 (324)
.....+...++..|+.++.+. . ...+.++ ....+.+.+. ++..+||||+++... .+..+...... .+
T Consensus 93 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~ 170 (394)
T PRK00411 93 CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDE-LFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YP 170 (394)
T ss_pred CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHH-HHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cC
Confidence 344456678888999988763 2 2223444 5566666665 346899999998643 34555443322 23
Q ss_pred CCe--EEEEcCCchhhhhcC-------CcceEEeccCChhhHHHHHHHhh
Q 038521 242 GSR--VIITARDKQVLTNCE-------IDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 242 GSr--IIiTTR~~~v~~~~~-------~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++ +|.++.+..+..... ....+.+++++.++..+++..++
T Consensus 171 ~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 171 GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 444 677766655433221 12356899999999999988775
No 17
>PF13173 AAA_14: AAA domain
Probab=94.64 E-value=0.072 Score=42.51 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=49.8
Q ss_pred HHHHhcCCCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhc------CCcceEEeccCChhhH
Q 038521 207 QSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNC------EIDHIYQMKELVHANA 274 (324)
Q Consensus 207 l~~~L~~kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~------~~~~~~~v~~L~~~es 274 (324)
+.+....++.+|+||+|.....|......+-+.++..+||+|+.....+..- |-...++|.+|+..|-
T Consensus 54 ~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 54 FLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3333444788999999998888887777666556778999999988776431 1234689999998763
No 18
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.20 E-value=2.6 Score=39.68 Aligned_cols=132 Identities=14% Similarity=0.059 Sum_probs=72.0
Q ss_pred ccccCCHHHHHHHHHHhhhc--C--C-CCccchhccHHHHHHHhc--CCCcEEEEecCCCHH-----HHHHHHhcCC-CC
Q 038521 173 AEETGRLDDLRKELLSKLLN--D--W-NVRNFQNINVNFQSKRLA--REKVLIVFDDVNHPR-----QIELLIGRLD-RF 239 (324)
Q Consensus 173 vs~~~~~~~l~~~il~~l~~--~--~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDDV~~~~-----~~~~l~~~~~-~~ 239 (324)
.....+...++..|+.++.. . . ...+..+ ....+.+.+. +++++||||+++... .+..|..... ..
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSE-VFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHH-HHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC
Confidence 44444567888888888852 2 1 1112233 3444555553 567899999998661 1333332211 11
Q ss_pred CC--CCeEEEEcCCchhhhhcC-------CcceEEeccCChhhHHHHHHHhhc---CCCCCChhHHHHHHHHHHHccc
Q 038521 240 AS--GSRVIITARDKQVLTNCE-------IDHIYQMKELVHANALKLFTQCAF---RRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 240 ~~--GSrIIiTTR~~~v~~~~~-------~~~~~~v~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~iv~~c~G 305 (324)
.+ .-.+|.+|........+. ....+++++++.+|-.+++..++- ......++..++..+++..+.|
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 12 234555565444322221 124678999999999999988762 2222333444445555555555
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.66 E-value=0.63 Score=40.28 Aligned_cols=92 Identities=16% Similarity=0.098 Sum_probs=46.0
Q ss_pred CCCcEEEEecCCCHH--------HHHHHHhcC---CCCCCCCeEEEEcCCchhhhh--------cCCcceEEeccCChhh
Q 038521 213 REKVLIVFDDVNHPR--------QIELLIGRL---DRFASGSRVIITARDKQVLTN--------CEIDHIYQMKELVHAN 273 (324)
Q Consensus 213 ~kr~LlVLDDV~~~~--------~~~~l~~~~---~~~~~GSrIIiTTR~~~v~~~--------~~~~~~~~v~~L~~~e 273 (324)
+++++||+||+.... -...+...+ ....+.+ +|+++....+... .+....+.+++|+.++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e 195 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEE 195 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHH
Confidence 356999999997554 122332222 2223334 4455444444433 1223348999999999
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHcccc
Q 038521 274 ALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQV 306 (324)
Q Consensus 274 s~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 306 (324)
+++++...+-..... +.-.+-.++|...+||.
T Consensus 196 ~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 196 AREFLKELFKELIKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp HHHHHHHHHHCC-------HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCC
Confidence 999998865222111 11234457888999984
No 20
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=91.42 E-value=0.79 Score=36.05 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=56.3
Q ss_pred eeeeeccccccccCCHHHHHHHHHHhhhcC-CCCccchhccHHHHHHHhcCCCc-EEEEecCCCH---HHHHHHHhcCCC
Q 038521 164 SYFAHNVRSAEETGRLDDLRKELLSKLLND-WNVRNFQNINVNFQSKRLAREKV-LIVFDDVNHP---RQIELLIGRLDR 238 (324)
Q Consensus 164 ~~wv~~v~~vs~~~~~~~l~~~il~~l~~~-~~~~~~~~~~~~~l~~~L~~kr~-LlVLDDV~~~---~~~~~l~~~~~~ 238 (324)
.+|+. .....+...+.+.|+..+... ....+... +.+.+.+.+...+. +||||++... +.++.|....+
T Consensus 40 ~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~- 113 (131)
T PF13401_consen 40 VIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDE-LRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN- 113 (131)
T ss_dssp EEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHH-HHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC-
T ss_pred EEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHH-HHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh-
Confidence 45787 777668999999999999776 33234445 56777777776655 9999999755 45666655554
Q ss_pred CCCCCeEEEEcCC
Q 038521 239 FASGSRVIITARD 251 (324)
Q Consensus 239 ~~~GSrIIiTTR~ 251 (324)
..+.++|+..+.
T Consensus 114 -~~~~~vvl~G~~ 125 (131)
T PF13401_consen 114 -ESNIKVVLVGTP 125 (131)
T ss_dssp -SCBEEEEEEESS
T ss_pred -CCCCeEEEEECh
Confidence 567777777654
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.17 E-value=1.8 Score=41.79 Aligned_cols=91 Identities=12% Similarity=0.200 Sum_probs=55.0
Q ss_pred cCCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEE--EcCCch--hhhhc-CCcceEEeccCChhhHHHHHHHhhcC
Q 038521 212 AREKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVII--TARDKQ--VLTNC-EIDHIYQMKELVHANALKLFTQCAFR 284 (324)
Q Consensus 212 ~~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIi--TTR~~~--v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~ 284 (324)
.+++.+|+||+++. ..+.+.|...+. .|+.++| ||.+.. +...+ .--.++++++|+.++...++.+.+-.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 45788999999985 456677766654 3555555 344332 11111 11257899999999999999886532
Q ss_pred CCCCC-hhHHHHHHHHHHHccc
Q 038521 285 RDHLD-AGYTALAHKAFSTRTQ 305 (324)
Q Consensus 285 ~~~~~-~~~~~l~~~iv~~c~G 305 (324)
..... +--.+....+++.|+|
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~G 188 (413)
T PRK13342 167 KERGLVELDDEALDALARLANG 188 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCC
Confidence 11100 1113445667778877
No 22
>PRK09087 hypothetical protein; Validated
Probab=90.12 E-value=1.7 Score=38.47 Aligned_cols=66 Identities=12% Similarity=0.179 Sum_probs=44.4
Q ss_pred cEEEEecCCC----HHHHHHHHhcCCCCCCCCeEEEEcCC---------chhhhhcCCcceEEeccCChhhHHHHHHHhh
Q 038521 216 VLIVFDDVNH----PRQIELLIGRLDRFASGSRVIITARD---------KQVLTNCEIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 216 ~LlVLDDV~~----~~~~~~l~~~~~~~~~GSrIIiTTR~---------~~v~~~~~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
-+|+|||+.. .+.+-.+...+. ..|..||+|++. +.+...+....++++++++.++-.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 4888999953 233322322222 347789998873 3344444455789999999999999999887
Q ss_pred c
Q 038521 283 F 283 (324)
Q Consensus 283 f 283 (324)
-
T Consensus 167 ~ 167 (226)
T PRK09087 167 A 167 (226)
T ss_pred H
Confidence 4
No 23
>PRK08727 hypothetical protein; Validated
Probab=89.54 E-value=3.9 Score=36.21 Aligned_cols=70 Identities=20% Similarity=0.196 Sum_probs=44.4
Q ss_pred CcEEEEecCCCH---HHHH-HHHhcCCC-CCCCCeEEEEcCCch---------hhhhcCCcceEEeccCChhhHHHHHHH
Q 038521 215 KVLIVFDDVNHP---RQIE-LLIGRLDR-FASGSRVIITARDKQ---------VLTNCEIDHIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 215 r~LlVLDDV~~~---~~~~-~l~~~~~~-~~~GSrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~es~~LF~~ 280 (324)
--+|||||+... ..|+ .+...++. ...|..||+|++... +...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 459999999732 2232 22222221 234677999998532 222222345889999999999999998
Q ss_pred hhcC
Q 038521 281 CAFR 284 (324)
Q Consensus 281 ~af~ 284 (324)
++..
T Consensus 174 ~a~~ 177 (233)
T PRK08727 174 RAQR 177 (233)
T ss_pred HHHH
Confidence 7754
No 24
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=89.30 E-value=2.4 Score=40.20 Aligned_cols=90 Identities=13% Similarity=0.220 Sum_probs=54.7
Q ss_pred CCCcEEEEecCCCH-------------H---HHHHHHhcCCCC--CCCCeEEEEcCCchhh-----hhcCCcceEEeccC
Q 038521 213 REKVLIVFDDVNHP-------------R---QIELLIGRLDRF--ASGSRVIITARDKQVL-----TNCEIDHIYQMKEL 269 (324)
Q Consensus 213 ~kr~LlVLDDV~~~-------------~---~~~~l~~~~~~~--~~GSrIIiTTR~~~v~-----~~~~~~~~~~v~~L 269 (324)
....+|+|||++.. + .+..+...+..+ ..+.+||.||.....+ .....+..++++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 35689999999743 1 233333333222 2467888888754432 22123568899999
Q ss_pred ChhhHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHcccc
Q 038521 270 VHANALKLFTQCAFRRDHLD-AGYTALAHKAFSTRTQV 306 (324)
Q Consensus 270 ~~~es~~LF~~~af~~~~~~-~~~~~l~~~iv~~c~Gl 306 (324)
+.++..++|..++.+...+. -++. .+++.+.|.
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~~~----~la~~t~g~ 327 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVDLE----AIAKMTEGA 327 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCCHH----HHHHHcCCC
Confidence 99999999999886544222 2333 444555553
No 25
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.72 E-value=1.5 Score=38.10 Aligned_cols=67 Identities=22% Similarity=0.334 Sum_probs=41.5
Q ss_pred cEEEEecCCCHH---H-HHHHHhcCCC-CCCCCeEEEEcCCch---------hhhhcCCcceEEeccCChhhHHHHHHHh
Q 038521 216 VLIVFDDVNHPR---Q-IELLIGRLDR-FASGSRVIITARDKQ---------VLTNCEIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 216 ~LlVLDDV~~~~---~-~~~l~~~~~~-~~~GSrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
-+|||||+.... . .+.+...+.. ...+.++|+||+... +...+.....++++++++++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 489999997542 2 3344433321 123458899887432 1222222357899999999999988775
Q ss_pred h
Q 038521 282 A 282 (324)
Q Consensus 282 a 282 (324)
+
T Consensus 172 ~ 172 (226)
T TIGR03420 172 A 172 (226)
T ss_pred H
Confidence 4
No 26
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.39 E-value=4.1 Score=34.48 Aligned_cols=87 Identities=9% Similarity=0.155 Sum_probs=59.3
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDK-QVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+.+-++|+|++.. ....+.|...+....+.+.+|++|++. .+..... ....+++.+++.++..+.+..+ + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 4556889999974 455777777776655677777777654 3322221 2358899999999988888776 2 1
Q ss_pred ChhHHHHHHHHHHHccccc
Q 038521 289 DAGYTALAHKAFSTRTQVI 307 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~Gll 307 (324)
. .+....++..++|-+
T Consensus 170 ~---~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 170 S---EEAAELLLALAGGSP 185 (188)
T ss_pred C---HHHHHHHHHHcCCCc
Confidence 1 345778899999844
No 27
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=86.10 E-value=3.8 Score=40.75 Aligned_cols=92 Identities=11% Similarity=0.122 Sum_probs=59.0
Q ss_pred cCCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEE-EcCCchhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCC
Q 038521 212 AREKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVII-TARDKQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDH 287 (324)
Q Consensus 212 ~~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIi-TTR~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~ 287 (324)
.+++-++|+|+++. ...++.|...+....+.+.+|+ ||+...+..... ....+++++++.++....+...+-....
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45677899999985 4668888877765556666654 555555544332 2357899999999999998887743321
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. + .+....|++.++|
T Consensus 206 ~i-e-~eAL~~Ia~~s~G 221 (507)
T PRK06645 206 KT-D-IEALRIIAYKSEG 221 (507)
T ss_pred CC-C-HHHHHHHHHHcCC
Confidence 11 0 1223446666666
No 28
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=85.64 E-value=2.7 Score=30.82 Aligned_cols=67 Identities=21% Similarity=0.209 Sum_probs=46.9
Q ss_pred cEEecCccccCCCchHHHHHHHHhcCCceEEEeCCC-CCcccchHHHHHHHhhcceEEEEEecCccCch
Q 038521 16 DVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDL-KRGDEISESLLGTIEASTISIIIFSEKYASSK 83 (324)
Q Consensus 16 dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~-~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~ 83 (324)
.||||-.-.|.. .--..|.+.+.+.|..+..=+.+ ..+....+..++.|++|+++|.++...|-..+
T Consensus 1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence 389997777732 23457777888788765432212 12555667889999999999999999986643
No 29
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=85.02 E-value=2.8 Score=38.79 Aligned_cols=86 Identities=10% Similarity=0.179 Sum_probs=56.4
Q ss_pred CCcEEEEecC--CCHHHHHHHHhcCCCCCCCCeEEEEcCCchhh-hhc-CCcceEEeccCChhhHHHHHHHhhcCCCCCC
Q 038521 214 EKVLIVFDDV--NHPRQIELLIGRLDRFASGSRVIITARDKQVL-TNC-EIDHIYQMKELVHANALKLFTQCAFRRDHLD 289 (324)
Q Consensus 214 kr~LlVLDDV--~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~-~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~~ 289 (324)
++=++|+|++ .+...+++|...+....+++.+|++|.+.+.+ ... .-...+++.++++++....+.... .. ..
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~-~~--~~ 169 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKY-ND--IK 169 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHh-cC--CC
Confidence 3445555555 46778999999888777899999888766432 222 123588999999999877665442 21 11
Q ss_pred hhHHHHHHHHHHHccc
Q 038521 290 AGYTALAHKAFSTRTQ 305 (324)
Q Consensus 290 ~~~~~l~~~iv~~c~G 305 (324)
.+....++.+|+|
T Consensus 170 ---~~~~~~l~~~~~g 182 (313)
T PRK05564 170 ---EEEKKSAIAFSDG 182 (313)
T ss_pred ---HHHHHHHHHHcCC
Confidence 1225567778887
No 30
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=84.89 E-value=5.8 Score=36.75 Aligned_cols=89 Identities=10% Similarity=0.086 Sum_probs=51.6
Q ss_pred CCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-CC
Q 038521 214 EKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDK-QVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-HL 288 (324)
Q Consensus 214 kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~~ 288 (324)
.+-+|||||+... ...+.|...+....+.+++|+||... .+.... .....+++.+++.++...++...+-... ..
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY 204 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3458999999744 34455555444444567888887543 222222 1224678899999998888877653222 11
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
+ .+....++++++|
T Consensus 205 ~---~~al~~l~~~~~g 218 (337)
T PRK12402 205 D---DDGLELIAYYAGG 218 (337)
T ss_pred C---HHHHHHHHHHcCC
Confidence 1 2334445555555
No 31
>PRK05642 DNA replication initiation factor; Validated
Probab=84.72 E-value=3.6 Score=36.49 Aligned_cols=86 Identities=24% Similarity=0.397 Sum_probs=51.0
Q ss_pred EEEEecCCC---HHHHHH-HHhcCCC-CCCCCeEEEEcCCchh---------hhhcCCcceEEeccCChhhHHHHHHHhh
Q 038521 217 LIVFDDVNH---PRQIEL-LIGRLDR-FASGSRVIITARDKQV---------LTNCEIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 217 LlVLDDV~~---~~~~~~-l~~~~~~-~~~GSrIIiTTR~~~v---------~~~~~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+|+|||+.- ..+|+. |...++. ...|.++|+|++...- ...+....++++++++.++-.+++..++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 688999962 234433 3333322 2357789998875331 1122233678999999999999999776
Q ss_pred cCCC-CCChhHHHHHHHHHHHccc
Q 038521 283 FRRD-HLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 283 f~~~-~~~~~~~~l~~~iv~~c~G 305 (324)
.... ..+ ++...-+++.+.|
T Consensus 180 ~~~~~~l~---~ev~~~L~~~~~~ 200 (234)
T PRK05642 180 SRRGLHLT---DEVGHFILTRGTR 200 (234)
T ss_pred HHcCCCCC---HHHHHHHHHhcCC
Confidence 5432 222 2444555555554
No 32
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=83.62 E-value=6.2 Score=37.59 Aligned_cols=87 Identities=8% Similarity=0.111 Sum_probs=57.4
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+.+-++|+||+. +......|...+..-.+++.+|++|.+.+ ++.... --..+.+.+|+.++..+++...... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~ 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---L 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---C
Confidence 456689999997 55667777777665455777777777654 332221 2357899999999999998875311 1
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
++ ..+ ..++..++|
T Consensus 217 ~~--~~~-~~l~~~s~G 230 (365)
T PRK07471 217 PD--DPR-AALAALAEG 230 (365)
T ss_pred CH--HHH-HHHHHHcCC
Confidence 11 111 567777887
No 33
>PRK06620 hypothetical protein; Validated
Probab=83.47 E-value=7.1 Score=34.11 Aligned_cols=68 Identities=9% Similarity=0.016 Sum_probs=42.3
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCC-CCCCCeEEEEcCCchh-------hhhcCCcceEEeccCChhhHHHHHHHhhc
Q 038521 215 KVLIVFDDVNHPRQIELLIGRLDR-FASGSRVIITARDKQV-------LTNCEIDHIYQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 215 r~LlVLDDV~~~~~~~~l~~~~~~-~~~GSrIIiTTR~~~v-------~~~~~~~~~~~v~~L~~~es~~LF~~~af 283 (324)
.-+|++|||....+ +.+...++. ...|..||+|++...- ...+...-+++++++++++-..+..+.+-
T Consensus 86 ~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 86 YNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 45788999974332 122222211 1357789999874432 22223345899999999998888877764
No 34
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=83.39 E-value=0.8 Score=41.19 Aligned_cols=63 Identities=8% Similarity=0.154 Sum_probs=38.4
Q ss_pred ccccceeeeecccccccc--CCHHHHHHHHHHhhhcC-CCCccc------hhccHHHHHHH-hcCCCcEEEEecCCCH
Q 038521 159 RHFQGSYFAHNVRSAEET--GRLDDLRKELLSKLLND-WNVRNF------QNINVNFQSKR-LAREKVLIVFDDVNHP 226 (324)
Q Consensus 159 ~~F~~~~wv~~v~~vs~~--~~~~~l~~~il~~l~~~-~~~~~~------~~~~~~~l~~~-L~~kr~LlVLDDV~~~ 226 (324)
.+|+..+|+. ++++ .++.++++.+...+... -+.... .. +......+ -.+++++|++|++...
T Consensus 43 ~~fdv~~~v~----vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~-~~~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 43 NHPEVYLIVL----LIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM-VLEKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred ccCCeEEEEE----EccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH-HHHHHHHHHHCCCCEEEEEECHHHh
Confidence 3799999999 7776 68899999884433222 111111 11 22222222 3579999999999643
No 35
>PLN03025 replication factor C subunit; Provisional
Probab=83.01 E-value=6.1 Score=36.70 Aligned_cols=90 Identities=8% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDK-QVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
++.-+++||++... ..-+.|...+....+.+++|+++... .+..... ....++++++++++-...+...+-... .
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34568999999843 44556655555555678888777543 2222111 124789999999998888877663322 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....+++.|+|
T Consensus 178 i~---~~~l~~i~~~~~g 192 (319)
T PLN03025 178 YV---PEGLEAIIFTADG 192 (319)
T ss_pred CC---HHHHHHHHHHcCC
Confidence 12 2345567777777
No 36
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.76 E-value=8.3 Score=38.42 Aligned_cols=91 Identities=5% Similarity=0.065 Sum_probs=58.6
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARD-KQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|||+++. ...++.|...+....+...+|++|.. ..+...+. ....+++.+|+.++....+...+-.....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 4566899999984 45688887777655556666666543 33433222 23579999999999999998876433321
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. -.+....|++.++|
T Consensus 195 i--~~~Al~~ia~~s~G 209 (504)
T PRK14963 195 A--EPEALQLVARLADG 209 (504)
T ss_pred C--CHHHHHHHHHHcCC
Confidence 1 12334556677776
No 37
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=81.67 E-value=1.4 Score=39.17 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=67.1
Q ss_pred CCCCCccEEecCccccCCCchHHHHHHHHh--cCCceEEEeC----CCCCcccchHHHHHHH-hhcceEEEEEecCccCc
Q 038521 10 NDKKMHDVFVSFRGEDTRDNFTSHLFSALF--QNNIETFIDN----DLKRGDEISESLLGTI-EASTISIIIFSEKYASS 82 (324)
Q Consensus 10 ~~~~~~dvFis~~g~D~~~~f~~~L~~~L~--~~g~~~f~d~----~~~~g~~~~~~~~~~i-~~s~~~i~v~S~~y~~s 82 (324)
...+.||+=+||.|+- .++++....+++ .--+..|.|- -|-+|+ +..-+.+.- +.|++.+|....||..-
T Consensus 173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K 249 (329)
T COG4916 173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICK 249 (329)
T ss_pred ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEe
Confidence 3467899999999996 569999999998 3446788874 444553 322222221 36788889999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCeEEeEEEe-eccc
Q 038521 83 KWCLDELLKILECKRNYGQIVIPVFYR-VDPS 113 (324)
Q Consensus 83 ~wcl~El~~i~~~~~~~~~~viPvfy~-v~ps 113 (324)
.||.-|...+-+.. .-....||.|. ++-+
T Consensus 250 ~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~ 279 (329)
T COG4916 250 STCHIEGLEGRLNP--ILDTGFRIKYLYADNI 279 (329)
T ss_pred eeeccchhhccccc--cccccceEEEEecCCc
Confidence 99998876654422 11345666664 4433
No 38
>PRK08084 DNA replication initiation factor; Provisional
Probab=81.61 E-value=5.4 Score=35.35 Aligned_cols=69 Identities=20% Similarity=0.378 Sum_probs=43.5
Q ss_pred cEEEEecCCCH---HHHHH-HHhcCCC-CCCC-CeEEEEcCCc---------hhhhhcCCcceEEeccCChhhHHHHHHH
Q 038521 216 VLIVFDDVNHP---RQIEL-LIGRLDR-FASG-SRVIITARDK---------QVLTNCEIDHIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 216 ~LlVLDDV~~~---~~~~~-l~~~~~~-~~~G-SrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~es~~LF~~ 280 (324)
-+|+|||+... .+|+. +...+.. ...| .++|+||+.. .+...+....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 48999999643 34432 2122211 1234 3799999754 2333444457899999999999999888
Q ss_pred hhcC
Q 038521 281 CAFR 284 (324)
Q Consensus 281 ~af~ 284 (324)
+|-.
T Consensus 179 ~a~~ 182 (235)
T PRK08084 179 RARL 182 (235)
T ss_pred HHHH
Confidence 6643
No 39
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=80.86 E-value=5.6 Score=41.43 Aligned_cols=70 Identities=10% Similarity=0.165 Sum_probs=49.2
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCchh-hhhc-CCcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDKQV-LTNC-EIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~~v-~~~~-~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
++.-++|||++... ..++.|+..+.......++|+||.+.+- ...+ .--..++++.|+.++..+.+.+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHH
Confidence 34457889999854 5588888877665567888887776543 2221 112578999999999988887765
No 40
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=80.05 E-value=1.9 Score=37.48 Aligned_cols=52 Identities=17% Similarity=0.390 Sum_probs=32.2
Q ss_pred CCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec
Q 038521 214 EKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK 267 (324)
Q Consensus 214 kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~ 267 (324)
.--+++||||. |......+...+....+.+.+||||-++.++..+ +..|.|.
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a--~~~~~v~ 212 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA--DKLIGVT 212 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT---SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc--ccccccc
Confidence 45589999998 3344555555554445679999999999988775 4445443
No 41
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=79.86 E-value=11 Score=39.58 Aligned_cols=112 Identities=13% Similarity=0.220 Sum_probs=67.1
Q ss_pred ceeeeeccccccc-cCCHHHHHHHHHHhhhcC-CC-------------CccchhccHHHHHHHhc--CCCcEEEEecCC-
Q 038521 163 GSYFAHNVRSAEE-TGRLDDLRKELLSKLLND-WN-------------VRNFQNINVNFQSKRLA--REKVLIVFDDVN- 224 (324)
Q Consensus 163 ~~~wv~~v~~vs~-~~~~~~l~~~il~~l~~~-~~-------------~~~~~~~~~~~l~~~L~--~kr~LlVLDDV~- 224 (324)
.+.|++ ... +.++..+...++..+..- +. ..+... ....+...|. .++.++||||--
T Consensus 66 ~v~Wls----lde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~-l~~~L~~Ela~~~~pl~LVlDDyHl 140 (894)
T COG2909 66 AVAWLS----LDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLES-LLSSLLNELASYEGPLYLVLDDYHL 140 (894)
T ss_pred ceeEee----cCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHH-HHHHHHHHHHhhcCceEEEeccccc
Confidence 467998 765 466788888888887633 11 111112 2222333332 367899999964
Q ss_pred --CHH---HHHHHHhcCCCCCCCCeEEEEcCCchhhhhcC---CcceEEec----cCChhhHHHHHHHhh
Q 038521 225 --HPR---QIELLIGRLDRFASGSRVIITARDKQVLTNCE---IDHIYQMK----ELVHANALKLFTQCA 282 (324)
Q Consensus 225 --~~~---~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~---~~~~~~v~----~L~~~es~~LF~~~a 282 (324)
++. .++.+....| ++=..|+|||...-+.... .+...++. .++.+|+-++|....
T Consensus 141 i~~~~l~~~l~fLl~~~P---~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 141 ISDPALHEALRFLLKHAP---ENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred cCcccHHHHHHHHHHhCC---CCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 332 2444444443 6779999999875432211 12344443 488999999998764
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.60 E-value=37 Score=36.43 Aligned_cols=106 Identities=10% Similarity=0.071 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHHhhhcC-C-CCccchhccHHHHHHHh-c--CCCcEEEEecCCCHH--HHHHHHhcCCCC-CCCCeEEE
Q 038521 176 TGRLDDLRKELLSKLLND-W-NVRNFQNINVNFQSKRL-A--REKVLIVFDDVNHPR--QIELLIGRLDRF-ASGSRVII 247 (324)
Q Consensus 176 ~~~~~~l~~~il~~l~~~-~-~~~~~~~~~~~~l~~~L-~--~kr~LlVLDDV~~~~--~~~~l~~~~~~~-~~GSrIIi 247 (324)
-.++..+...|..++.+. . ......+ ..+.+...+ . +...+||||+|+... +=+.|...+.|. ..+++|+|
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~e-vLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFK-ILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHH-HHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 345677888888888655 2 1111122 233333333 2 223589999998432 112222222221 24667655
Q ss_pred --EcCCch--------hhhhcCCcceEEeccCChhhHHHHHHHhhc
Q 038521 248 --TARDKQ--------VLTNCEIDHIYQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 248 --TTR~~~--------v~~~~~~~~~~~v~~L~~~es~~LF~~~af 283 (324)
+|.+-. +...++. ..+..++++.++-.+++..++-
T Consensus 906 IGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred EEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHH
Confidence 333222 2222222 2345589999999999998874
No 43
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.91 E-value=12 Score=35.59 Aligned_cols=90 Identities=9% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCC-
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDH- 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~- 287 (324)
+++-++|+|++... ..++.|...+....+..++|++|.+.. +.... +--..+++++++.++-.+.+...+-....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 34568999999855 357788777766556777777775433 33222 12357899999999988877765533221
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....|++.++|
T Consensus 198 i~---~~al~~ia~~s~G 212 (363)
T PRK14961 198 TD---EYALKLIAYHAHG 212 (363)
T ss_pred CC---HHHHHHHHHHcCC
Confidence 11 1234456666666
No 44
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=77.46 E-value=12 Score=34.87 Aligned_cols=91 Identities=7% Similarity=0.063 Sum_probs=54.6
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|+|++... ...+.|...+....+.+.+|++|.+.. +.... .....++.++++.++..+.+...+-.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 34558899998644 557777777655456677777765444 33222 122467888999998888877765332211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....+++.++|
T Consensus 196 i~--~~a~~~l~~~~~g 210 (355)
T TIGR02397 196 IE--DEALELIARAADG 210 (355)
T ss_pred CC--HHHHHHHHHHcCC
Confidence 11 2344455566665
No 45
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=77.33 E-value=5.2 Score=33.36 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=35.1
Q ss_pred HHHHHHhcCCC-cEEEEecCCCH-----HHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEecc
Q 038521 205 NFQSKRLAREK-VLIVFDDVNHP-----RQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKE 268 (324)
Q Consensus 205 ~~l~~~L~~kr-~LlVLDDV~~~-----~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~ 268 (324)
+..++.+.... =|||||.+... -..+.+...+...-++.-+|+|.|+..=.-.--++.+.+|.+
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~~ 154 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMRE 154 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecce
Confidence 34444554444 49999998633 223333333333345778999999865211111345556554
No 46
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=76.30 E-value=14 Score=35.01 Aligned_cols=89 Identities=9% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITA-RDKQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|+|++. +....+.|...+.....+..+|++| +-..++.... --..+++++++.++..+++........ .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~ 218 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-S 218 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-C
Confidence 456689999998 4456677777665444455555544 4434433321 125899999999999999887432211 1
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. .+....+++.++|
T Consensus 219 ~---~~~~~~i~~~s~G 232 (351)
T PRK09112 219 D---GEITEALLQRSKG 232 (351)
T ss_pred C---HHHHHHHHHHcCC
Confidence 1 2335567888887
No 47
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=73.99 E-value=12 Score=38.56 Aligned_cols=91 Identities=7% Similarity=0.055 Sum_probs=52.4
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|||++... ...+.|...+.......++|++|.+.. +.... +.-..+++++++.++-...+.+.+-+..-.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 346666666654445667777775443 22211 112457788999888877776655322211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. -.+....|++.++|
T Consensus 198 i--d~eAL~~Ia~~A~G 212 (709)
T PRK08691 198 Y--EPPALQLLGRAAAG 212 (709)
T ss_pred c--CHHHHHHHHHHhCC
Confidence 0 12234556666665
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=73.13 E-value=9.5 Score=34.89 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=57.0
Q ss_pred HHHHHhcCCCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhc--CCcceEEeccCChhhHHHHHHHhhc
Q 038521 206 FQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNC--EIDHIYQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~--~~~~~~~v~~L~~~es~~LF~~~af 283 (324)
.+...+.+.+..+|+|+..+..++... + .+.+-|..||+...+.... .....+++++++.+|..+++...+-
T Consensus 100 ~l~~~~~~~~~~~v~~~~~~~~~~~~~---~---~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 100 LLYPAMEDFRLDIVIGKGPSARSVRLD---L---PPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred HhhHHHhhhheeeeeccCccccceeec---C---CCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 344455555666777776655554321 1 1355666777765543321 1234689999999999999998874
Q ss_pred CCC-CCChhHHHHHHHHHHHccccc
Q 038521 284 RRD-HLDAGYTALAHKAFSTRTQVI 307 (324)
Q Consensus 284 ~~~-~~~~~~~~l~~~iv~~c~Gll 307 (324)
... ..+ .+....|++.|+|..
T Consensus 174 ~~~~~~~---~~al~~ia~~~~G~p 195 (305)
T TIGR00635 174 LLNVEIE---PEAALEIARRSRGTP 195 (305)
T ss_pred HhCCCcC---HHHHHHHHHHhCCCc
Confidence 322 112 345567889999843
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=72.67 E-value=16 Score=36.18 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCcEEEEecCCCHH------HHHHHHhcCCCCCCCCeEEEEcCCch-hhh-hc-CCcceEEeccCChhhHHHHHHHhhcC
Q 038521 214 EKVLIVFDDVNHPR------QIELLIGRLDRFASGSRVIITARDKQ-VLT-NC-EIDHIYQMKELVHANALKLFTQCAFR 284 (324)
Q Consensus 214 kr~LlVLDDV~~~~------~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~-~~-~~~~~~~v~~L~~~es~~LF~~~af~ 284 (324)
++-+||||+++... .++.|...+. ..+..||+|+.+.. ... .. .....+++++++.++....+...+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 67799999998542 3555655544 23455677764432 111 11 12356889999999888887776643
Q ss_pred CCC-CChhHHHHHHHHHHHccc
Q 038521 285 RDH-LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 285 ~~~-~~~~~~~l~~~iv~~c~G 305 (324)
... .+ .+....|++.++|
T Consensus 176 egi~i~---~eaL~~Ia~~s~G 194 (482)
T PRK04195 176 EGIECD---DEALKEIAERSGG 194 (482)
T ss_pred cCCCCC---HHHHHHHHHHcCC
Confidence 321 22 2345566666666
No 50
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=72.49 E-value=22 Score=32.53 Aligned_cols=88 Identities=8% Similarity=0.162 Sum_probs=53.3
Q ss_pred CcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCC-CC
Q 038521 215 KVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDK-QVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDH-LD 289 (324)
Q Consensus 215 r~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~-~~ 289 (324)
+-+|++|++... ...+.|...+....+.+++|+++... .+.... .....+++++++.++....+...+-.... ..
T Consensus 103 ~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~ 182 (319)
T PRK00440 103 FKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEIT 182 (319)
T ss_pred ceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 458999998743 44556666555555667787777432 222211 11246899999999988888877643321 12
Q ss_pred hhHHHHHHHHHHHccc
Q 038521 290 AGYTALAHKAFSTRTQ 305 (324)
Q Consensus 290 ~~~~~l~~~iv~~c~G 305 (324)
.+....+++.++|
T Consensus 183 ---~~al~~l~~~~~g 195 (319)
T PRK00440 183 ---DDALEAIYYVSEG 195 (319)
T ss_pred ---HHHHHHHHHHcCC
Confidence 2334456667776
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=71.75 E-value=19 Score=34.69 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=59.9
Q ss_pred HhcCCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEE--EcCCchhhhh---cCCcceEEeccCChhhHHHHHHHhh
Q 038521 210 RLAREKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVII--TARDKQVLTN---CEIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 210 ~L~~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIi--TTR~~~v~~~---~~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+..+++.+|.||.|- +..|=+.|.+.. ..|.-|+| ||-+..-.-. ..-..+|++++|+.+|-.+++.+-+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 445899999999996 556777776554 46877776 5555542111 1224799999999999999998843
Q ss_pred cCCCCCC----hhH-HHHHHHHHHHccc
Q 038521 283 FRRDHLD----AGY-TALAHKAFSTRTQ 305 (324)
Q Consensus 283 f~~~~~~----~~~-~~l~~~iv~~c~G 305 (324)
-.....- ..+ ++.-.-++..++|
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 2211111 112 2345557788888
No 52
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=71.53 E-value=8.5 Score=39.36 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=55.3
Q ss_pred cHHHHHHHhcCCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEE--EcCCchhhh-hc-CCcceEEeccCChhhHHH
Q 038521 203 NVNFQSKRLAREKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVII--TARDKQVLT-NC-EIDHIYQMKELVHANALK 276 (324)
Q Consensus 203 ~~~~l~~~L~~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIi--TTR~~~v~~-~~-~~~~~~~v~~L~~~es~~ 276 (324)
.+..+.+.+..++++++.|+.|.. ..|+.+...+....+...+++ ||++...+. .. ..-..+.+.+++.+|.+.
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 467788888899999998877643 458887766665555555555 666554221 11 111357889999999999
Q ss_pred HHHHhhc
Q 038521 277 LFTQCAF 283 (324)
Q Consensus 277 LF~~~af 283 (324)
++.+.+-
T Consensus 361 Il~~~a~ 367 (615)
T TIGR02903 361 IVLNAAE 367 (615)
T ss_pred HHHHHHH
Confidence 9998763
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=71.40 E-value=15 Score=34.17 Aligned_cols=64 Identities=8% Similarity=-0.135 Sum_probs=41.6
Q ss_pred CCeEEEEcCCchhhhhcC--CcceEEeccCChhhHHHHHHHhhcCCCCCChhHHHHHHHHHHHccccc
Q 038521 242 GSRVIITARDKQVLTNCE--IDHIYQMKELVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVI 307 (324)
Q Consensus 242 GSrIIiTTR~~~v~~~~~--~~~~~~v~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gll 307 (324)
.+-|..||+...+..... ....+++++++.++..+++.+.+-...-. --.+....|++.|+|..
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTP 216 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCc
Confidence 445666777554433211 13468999999999999999887543211 11345778899999843
No 54
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.88 E-value=21 Score=36.74 Aligned_cols=92 Identities=7% Similarity=0.055 Sum_probs=56.9
Q ss_pred cCCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcC-CchhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCC
Q 038521 212 AREKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITAR-DKQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDH 287 (324)
Q Consensus 212 ~~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR-~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~ 287 (324)
.++.-++|||++.. ...++.|+..+..-..+.++|++|. ...+...+- --..+.++.++.++..+.+...+-....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 35566899999984 4678888888765555666555554 444443321 1257899999999988877765522211
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. -.+..+.|++.++|
T Consensus 202 ~~--d~eAL~~IA~~A~G 217 (700)
T PRK12323 202 AH--EVNALRLLAQAAQG 217 (700)
T ss_pred CC--CHHHHHHHHHHcCC
Confidence 11 12233556677776
No 55
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=70.34 E-value=9.8 Score=36.66 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=49.9
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhc------CCcceEEeccCChhhHHH
Q 038521 214 EKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNC------EIDHIYQMKELVHANALK 276 (324)
Q Consensus 214 kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~------~~~~~~~v~~L~~~es~~ 276 (324)
++.+|+||.|.....|+.....+-+.++. +|++|+-+..++... |-...+++-||+..|-..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 67899999999999999988887776766 899999877664332 234578999999999875
No 56
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.87 E-value=23 Score=35.68 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=47.1
Q ss_pred cCCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhc-CCcceEEeccCChhhHHHHHHHhh
Q 038521 212 AREKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARD-KQVLTNC-EIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 212 ~~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
.+++-++|+|++. +....+.|...+......+++|++|-+ ..+.... .-...+++++|+.++-.+.+...+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHH
Confidence 3566799999997 445678888777755556666655543 3343222 123688999999998776666543
No 57
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=69.78 E-value=18 Score=37.80 Aligned_cols=67 Identities=15% Similarity=0.346 Sum_probs=43.9
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEE--cCCch--hhhhc-CCcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIIT--ARDKQ--VLTNC-EIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiT--TR~~~--v~~~~-~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++.+|+||||+ +..+.+.|...+. .|+.++|+ |.+.. +.... .-..++++++|+.++...++.+.+
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 467799999997 5567777765543 46666653 33321 11111 113578999999999999988765
No 58
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.66 E-value=32 Score=35.24 Aligned_cols=70 Identities=11% Similarity=0.217 Sum_probs=47.1
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhc-CCcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARD-KQVLTNC-EIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
++.-++|||+|. +....+.|...+...-...++|++|.+ ..+.... .-...++++.|+.++-.+.+...+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence 344588999998 456688888777654456676666544 3333222 123678999999998888877665
No 59
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.75 E-value=20 Score=38.16 Aligned_cols=92 Identities=10% Similarity=0.077 Sum_probs=59.9
Q ss_pred cCCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCC
Q 038521 212 AREKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDH 287 (324)
Q Consensus 212 ~~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~ 287 (324)
.+++-++|||++. +....+.|+..+.......++|++|.+.. +...+- --..|++++|+.++....+...+-...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg- 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ- 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-
Confidence 4677799999997 45778888887766556677776665543 432221 126899999999999988876552211
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. --.+....|++.++|
T Consensus 196 I~-~edeAL~lIA~~S~G 212 (944)
T PRK14949 196 LP-FEAEALTLLAKAANG 212 (944)
T ss_pred CC-CCHHHHHHHHHHcCC
Confidence 11 112345567777777
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.22 E-value=28 Score=35.89 Aligned_cols=91 Identities=9% Similarity=0.084 Sum_probs=56.4
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|+|+|.. ....+.|...+....++.++|++|.+.. +.... .....+++++|+.++..+.+...+-+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 5566899999984 4567778777765556678888776543 21111 123578999999998888777665332211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
--.+....|++.++|
T Consensus 197 --id~eAL~~IA~~S~G 211 (702)
T PRK14960 197 --ADQDAIWQIAESAQG 211 (702)
T ss_pred --CCHHHHHHHHHHcCC
Confidence 012233456666666
No 61
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.05 E-value=28 Score=32.90 Aligned_cols=72 Identities=10% Similarity=0.238 Sum_probs=44.8
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHhhcC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQCAFR 284 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~ 284 (324)
+++-+|++|++.. ...++.+...+......+.+|++| ....+.... .....++.+++++++....+...+-.
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~ 182 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK 182 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHH
Confidence 3455799999874 345777766554434455666555 333333222 12347899999999888888776643
No 62
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=68.02 E-value=12 Score=36.64 Aligned_cols=69 Identities=10% Similarity=0.244 Sum_probs=43.1
Q ss_pred CcEEEEecCCCH----HHHHHHHhcCCC-CCCCCeEEEEcCCch---------hhhhcCCcceEEeccCChhhHHHHHHH
Q 038521 215 KVLIVFDDVNHP----RQIELLIGRLDR-FASGSRVIITARDKQ---------VLTNCEIDHIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 215 r~LlVLDDV~~~----~~~~~l~~~~~~-~~~GSrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~es~~LF~~ 280 (324)
.-+|||||+... ...+.|...++. ...|..||+|+.... +...+...-+.++++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 458999999632 222344333322 234567888875332 222223345778999999999999998
Q ss_pred hhc
Q 038521 281 CAF 283 (324)
Q Consensus 281 ~af 283 (324)
++-
T Consensus 287 ~~~ 289 (450)
T PRK14087 287 EIK 289 (450)
T ss_pred HHH
Confidence 873
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=66.90 E-value=33 Score=35.34 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=57.0
Q ss_pred cCCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCC
Q 038521 212 AREKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDH 287 (324)
Q Consensus 212 ~~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~ 287 (324)
.+++-++|||++. +....+.|...+.......++|++|.+.+ +...+ .-...|++++|+.++....+...+-...-
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 4566789999997 45678888777765555666666655543 43222 11367999999999998888765422111
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. -.+....|++.++|
T Consensus 197 ~~--e~~aL~~Ia~~s~G 212 (647)
T PRK07994 197 PF--EPRALQLLARAADG 212 (647)
T ss_pred CC--CHHHHHHHHHHcCC
Confidence 11 12233456666666
No 64
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=66.70 E-value=7.1 Score=37.58 Aligned_cols=64 Identities=8% Similarity=0.206 Sum_probs=37.0
Q ss_pred cccccceeeeeccccccccC--CHHHHHHHHHHhhhcC-CCCccchhc-----cHHHHHHH-hcCCCcEEEEecCCC
Q 038521 158 IRHFQGSYFAHNVRSAEETG--RLDDLRKELLSKLLND-WNVRNFQNI-----NVNFQSKR-LAREKVLIVFDDVNH 225 (324)
Q Consensus 158 ~~~F~~~~wv~~v~~vs~~~--~~~~l~~~il~~l~~~-~~~~~~~~~-----~~~~l~~~-L~~kr~LlVLDDV~~ 225 (324)
.++|+.++||. ++++. ++.+++++++..+... -+....... ..+.-+.. -.++++||++|++..
T Consensus 195 ~nhFDv~~~Vv----LIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 195 TNHPEVHLIVL----LIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred hhcCCeEEEEE----EeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHH
Confidence 45899999999 77666 6788888876322211 010000000 11111111 367999999999964
No 65
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=66.39 E-value=35 Score=34.28 Aligned_cols=91 Identities=9% Similarity=0.102 Sum_probs=55.6
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|+|++.. .+..++|...+....+.+++|++|.+.. +.... .-...+++.+++.++....+...+-...-.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4456889999974 4567778777765556778777776542 22211 113578999999998888776554322211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. -.+....|++.++|
T Consensus 196 i--~~~Al~~Ia~~s~G 210 (535)
T PRK08451 196 Y--EPEALEILARSGNG 210 (535)
T ss_pred C--CHHHHHHHHHHcCC
Confidence 1 12334456666665
No 66
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=66.29 E-value=10 Score=36.59 Aligned_cols=65 Identities=8% Similarity=0.204 Sum_probs=39.1
Q ss_pred cccccceeeeecccccccc--CCHHHHHHHHHHhhhcC-CCCccch--h---ccHHHHHHH-hcCCCcEEEEecCCCH
Q 038521 158 IRHFQGSYFAHNVRSAEET--GRLDDLRKELLSKLLND-WNVRNFQ--N---INVNFQSKR-LAREKVLIVFDDVNHP 226 (324)
Q Consensus 158 ~~~F~~~~wv~~v~~vs~~--~~~~~l~~~il~~l~~~-~~~~~~~--~---~~~~~l~~~-L~~kr~LlVLDDV~~~ 226 (324)
.++|+..+|+. ++++ .++.++++.++..+... -+..... . .+.+..+.. -.+++++|++|.+...
T Consensus 194 ~nhfdv~v~Vl----LIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 194 RNHPEVELIVL----LIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred ccCCceEEEEE----EcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHH
Confidence 34799999999 7755 67889999886554332 1111100 0 011222222 3589999999999643
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.79 E-value=29 Score=34.24 Aligned_cols=90 Identities=10% Similarity=0.133 Sum_probs=53.5
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARD-KQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
+++-+||+|++... .+.+.|...+....+...+|++|.+ ..+..... ....+++++++.++-...+...+-... .
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 45669999999744 4567777666544444555544433 33333221 235789999999998888777664322 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....|++.++|
T Consensus 196 i~---~eal~~Ia~~s~G 210 (472)
T PRK14962 196 ID---REALSFIAKRASG 210 (472)
T ss_pred CC---HHHHHHHHHHhCC
Confidence 11 2334456666665
No 68
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=65.27 E-value=27 Score=35.67 Aligned_cols=91 Identities=10% Similarity=0.114 Sum_probs=56.7
Q ss_pred cCCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCC
Q 038521 212 AREKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARD-KQVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDH 287 (324)
Q Consensus 212 ~~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~ 287 (324)
.+++-+||+|++.. ....+.|...+........+|++|.+ ..+...+ ..-..+++++|+.++....+...+.....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 35667899999974 46677777776544455666666655 3443322 11247889999999988888776543321
Q ss_pred -CChhHHHHHHHHHHHccc
Q 038521 288 -LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 -~~~~~~~l~~~iv~~c~G 305 (324)
.. .+....|++.++|
T Consensus 197 ~id---~eal~lIA~~s~G 212 (624)
T PRK14959 197 DYD---PAAVRLIARRAAG 212 (624)
T ss_pred CCC---HHHHHHHHHHcCC
Confidence 22 2334556666666
No 69
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=64.36 E-value=22 Score=25.71 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=37.2
Q ss_pred ccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecC
Q 038521 15 HDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEK 78 (324)
Q Consensus 15 ~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 78 (324)
+||+|...+++. ...+-.+...|+..|+++-+|.. +..+...+..|-..---.++++.++
T Consensus 2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~---~~~~~~~~~~a~~~g~~~~iiig~~ 61 (91)
T cd00860 2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLR---NEKLGKKIREAQLQKIPYILVVGDK 61 (91)
T ss_pred eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECcc
Confidence 677776555432 34677889999999999999861 2355556655533332334444443
No 70
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=63.99 E-value=1.4e+02 Score=28.51 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=74.2
Q ss_pred ccccCCHHHHHHHHHHhhhcC-CCCccchhccHHHHHHHhc--CCCcEEEEecCCCHH-----HHHHHHhcCCCCCCCCe
Q 038521 173 AEETGRLDDLRKELLSKLLND-WNVRNFQNINVNFQSKRLA--REKVLIVFDDVNHPR-----QIELLIGRLDRFASGSR 244 (324)
Q Consensus 173 vs~~~~~~~l~~~il~~l~~~-~~~~~~~~~~~~~l~~~L~--~kr~LlVLDDV~~~~-----~~~~l~~~~~~~~~GSr 244 (324)
.-.......+..+|+.++... .......+ .-+.+.+.+. ++.++||||+++... .+-.|......+ .++
T Consensus 80 c~~~~t~~~i~~~i~~~~~~~p~~g~~~~~-~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~ 156 (366)
T COG1474 80 CLELRTPYQVLSKILNKLGKVPLTGDSSLE-ILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVK 156 (366)
T ss_pred eeeCCCHHHHHHHHHHHcCCCCCCCCchHH-HHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--cee
Confidence 444567788889999988644 22222223 4455566654 478999999998432 233333333222 455
Q ss_pred EE--EEcCCchhhhhc--------CCcceEEeccCChhhHHHHHHHhh---cCCCCCChhHHHHHHHHHHHccc
Q 038521 245 VI--ITARDKQVLTNC--------EIDHIYQMKELVHANALKLFTQCA---FRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 245 II--iTTR~~~v~~~~--------~~~~~~~v~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~G 305 (324)
|+ ..+-+......+ +... ...++-+.+|-...+..++ |......++..++...++..-+|
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G 229 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG 229 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhhccCcce-eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc
Confidence 43 344443333222 1222 4567777777777777665 55555556666666666666666
No 71
>PRK04132 replication factor C small subunit; Provisional
Probab=63.65 E-value=67 Score=34.23 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=57.4
Q ss_pred CcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCChhhHHHHHHHhhcCCC-CCC
Q 038521 215 KVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELVHANALKLFTQCAFRRD-HLD 289 (324)
Q Consensus 215 r~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~-~~~ 289 (324)
.-+++||+++.. .+..+|...+.......++|++|.+.. +..... -...+++++++.++-.+.+.+.+-... ..+
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~ 710 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT 710 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 469999999854 577888877776566777777665543 333321 235789999999888877766553222 111
Q ss_pred hhHHHHHHHHHHHccc
Q 038521 290 AGYTALAHKAFSTRTQ 305 (324)
Q Consensus 290 ~~~~~l~~~iv~~c~G 305 (324)
.+....|++.|+|
T Consensus 711 ---~e~L~~Ia~~s~G 723 (846)
T PRK04132 711 ---EEGLQAILYIAEG 723 (846)
T ss_pred ---HHHHHHHHHHcCC
Confidence 2345567777777
No 72
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=63.46 E-value=33 Score=33.07 Aligned_cols=86 Identities=12% Similarity=0.151 Sum_probs=54.4
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDK-QVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++++|++.. ....+.|...+....++..+|++|.+. .+...+- --..+.+++++.++..+.+.... + .
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~---~ 191 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G---V 191 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C---C
Confidence 4455788899984 455566766665545677777766664 3433321 23578999999999988886432 1 1
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
+ .+.+..++..++|
T Consensus 192 ~---~~~a~~la~~s~G 205 (394)
T PRK07940 192 D---PETARRAARASQG 205 (394)
T ss_pred C---HHHHHHHHHHcCC
Confidence 1 2335567777777
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=63.20 E-value=68 Score=30.71 Aligned_cols=73 Identities=14% Similarity=0.288 Sum_probs=45.8
Q ss_pred CCCcEEEEecCCCH-------------HH---HHHHHhcCCCC--CCCCeEEEEcCCchhhhhc-----CCcceEEeccC
Q 038521 213 REKVLIVFDDVNHP-------------RQ---IELLIGRLDRF--ASGSRVIITARDKQVLTNC-----EIDHIYQMKEL 269 (324)
Q Consensus 213 ~kr~LlVLDDV~~~-------------~~---~~~l~~~~~~~--~~GSrIIiTTR~~~v~~~~-----~~~~~~~v~~L 269 (324)
....+|+|||++.. +. +..+...+..+ ..+.+||.||...+.+... ..+..++++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45689999999753 11 12222222221 2356788888765433221 23567899999
Q ss_pred ChhhHHHHHHHhhcCC
Q 038521 270 VHANALKLFTQCAFRR 285 (324)
Q Consensus 270 ~~~es~~LF~~~af~~ 285 (324)
+.++-.++|..+..+.
T Consensus 303 ~~~~R~~Il~~~~~~~ 318 (389)
T PRK03992 303 DEEGRLEILKIHTRKM 318 (389)
T ss_pred CHHHHHHHHHHHhccC
Confidence 9999999999887543
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.04 E-value=50 Score=32.69 Aligned_cols=92 Identities=7% Similarity=-0.028 Sum_probs=56.6
Q ss_pred cCCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcC-CchhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCC
Q 038521 212 AREKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITAR-DKQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDH 287 (324)
Q Consensus 212 ~~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR-~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~ 287 (324)
.++.-++|+|++. +...+++|...+........+|++|. ...+....- --..|.+.+++.++-.+.+...+-...-
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 3556689999998 45678888877765444555554554 344433321 1257999999998888877766532221
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
. --.+....|++.++|
T Consensus 199 -~-~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 199 -Q-YDQEGLFWIAKKGDG 214 (484)
T ss_pred -C-CCHHHHHHHHHHcCC
Confidence 1 012344567777777
No 75
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=62.96 E-value=27 Score=34.95 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=48.7
Q ss_pred HHhcCCCcEEEEecCCCHHHHHHH------------HhcC---CCCCCCCeEEEEcCCchhhhhcCC----cceEEeccC
Q 038521 209 KRLAREKVLIVFDDVNHPRQIELL------------IGRL---DRFASGSRVIITARDKQVLTNCEI----DHIYQMKEL 269 (324)
Q Consensus 209 ~~L~~kr~LlVLDDV~~~~~~~~l------------~~~~---~~~~~GSrIIiTTR~~~v~~~~~~----~~~~~v~~L 269 (324)
..-+..--.||+||+...-+|-.+ .-.+ |..|..=-|+-||....|+..|+. +..++|+.|
T Consensus 593 DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 593 DAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred HhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 333556678999999766555333 2222 322333346678888999999974 568899999
Q ss_pred Ch-hhHHHHHHHh
Q 038521 270 VH-ANALKLFTQC 281 (324)
Q Consensus 270 ~~-~es~~LF~~~ 281 (324)
+. ++..+.++..
T Consensus 673 ~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 673 TTGEQLLEVLEEL 685 (744)
T ss_pred CchHHHHHHHHHc
Confidence 87 7777777654
No 76
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=62.32 E-value=67 Score=32.86 Aligned_cols=69 Identities=9% Similarity=0.219 Sum_probs=43.2
Q ss_pred cEEEEecCCCH---HHH-HHHHhcCCC-CCCCCeEEEEcCCc---------hhhhhcCCcceEEeccCChhhHHHHHHHh
Q 038521 216 VLIVFDDVNHP---RQI-ELLIGRLDR-FASGSRVIITARDK---------QVLTNCEIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 216 ~LlVLDDV~~~---~~~-~~l~~~~~~-~~~GSrIIiTTR~~---------~v~~~~~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
=||+|||+... +.| +.|...++. ...|..|||||... .+...+...-+++++..+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 38999999632 222 222222221 13466788888753 12233334568899999999999999988
Q ss_pred hcC
Q 038521 282 AFR 284 (324)
Q Consensus 282 af~ 284 (324)
+-.
T Consensus 459 a~~ 461 (617)
T PRK14086 459 AVQ 461 (617)
T ss_pred HHh
Confidence 743
No 77
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=62.18 E-value=34 Score=33.54 Aligned_cols=90 Identities=7% Similarity=0.067 Sum_probs=53.3
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcC-Cchhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITAR-DKQVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR-~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
+++-++|+|++... ...+.|...+....+...+|++|. .+.+...+ .....++++++++++-...+...+=+.. .
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 55668899998743 456667666665445667776663 33333322 1235789999999988877766542211 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. .+....+++.++|
T Consensus 200 i~---~~al~~L~~~s~g 214 (451)
T PRK06305 200 TS---REALLPIARAAQG 214 (451)
T ss_pred CC---HHHHHHHHHHcCC
Confidence 11 2234456666665
No 78
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=61.34 E-value=20 Score=32.74 Aligned_cols=68 Identities=15% Similarity=0.193 Sum_probs=44.5
Q ss_pred CcEEEEecCCC-----------HHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcC--------CcceEEeccCChhhHH
Q 038521 215 KVLIVFDDVNH-----------PRQIELLIGRLDRFASGSRVIITARDKQVLTNCE--------IDHIYQMKELVHANAL 275 (324)
Q Consensus 215 r~LlVLDDV~~-----------~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~--------~~~~~~v~~L~~~es~ 275 (324)
.-+|+||++.. .+.++.|...+.....+-+||.+|.....-.... ....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 46899999962 2334556665555455667777775432211111 1357899999999999
Q ss_pred HHHHHhh
Q 038521 276 KLFTQCA 282 (324)
Q Consensus 276 ~LF~~~a 282 (324)
+++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9988876
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=61.07 E-value=17 Score=28.17 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=25.9
Q ss_pred cCCCcEEEEecCCCH--HHHHHHHh---cCCCC---CCCCeEEEEcCCch
Q 038521 212 AREKVLIVFDDVNHP--RQIELLIG---RLDRF---ASGSRVIITARDKQ 253 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~--~~~~~l~~---~~~~~---~~GSrIIiTTR~~~ 253 (324)
..+..+|+|||++.. ...+.+.. ..... ..+.+||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 456789999999854 22223332 22221 36778888887654
No 80
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=61.01 E-value=1.1e+02 Score=28.01 Aligned_cols=67 Identities=12% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCCcEEEEecCCCH---HHHHHHHhcCCCCCCCCeEEEEcCCchhh-hhc-CCcceEEeccCChhhHHHHHH
Q 038521 213 REKVLIVFDDVNHP---RQIELLIGRLDRFASGSRVIITARDKQVL-TNC-EIDHIYQMKELVHANALKLFT 279 (324)
Q Consensus 213 ~kr~LlVLDDV~~~---~~~~~l~~~~~~~~~GSrIIiTTR~~~v~-~~~-~~~~~~~v~~L~~~es~~LF~ 279 (324)
+.+-+||+||+... +..+.|...+.....++++|+||....-+ ... ..-..+.++..+.++...++.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 34568899999744 23344444344445678999998654321 111 111356777777777765544
No 81
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=59.49 E-value=18 Score=33.55 Aligned_cols=87 Identities=10% Similarity=0.133 Sum_probs=57.6
Q ss_pred EEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCCChhH
Q 038521 217 LIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHLDAGY 292 (324)
Q Consensus 217 LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~~~~~ 292 (324)
.+|||+.+. .+.|.+|......+..-+|.|+.+..-. +....- --..|.-++|.+++...-+...|-+.+-.. -
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~--d 209 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI--D 209 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC--C
Confidence 678899985 4779999998888777888665554333 222211 124688899999888887777764433211 1
Q ss_pred HHHHHHHHHHccc
Q 038521 293 TALAHKAFSTRTQ 305 (324)
Q Consensus 293 ~~l~~~iv~~c~G 305 (324)
.+..+.|+++++|
T Consensus 210 ~~al~~I~~~S~G 222 (346)
T KOG0989|consen 210 DDALKLIAKISDG 222 (346)
T ss_pred HHHHHHHHHHcCC
Confidence 3445678888888
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=59.25 E-value=12 Score=32.72 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=43.6
Q ss_pred HHHHHhcCCCcEEEEecCCCH---HHH-HHHHhcCCC-CCCCCeEEEEcCCc-hhhhhc--------CCcceEEeccCCh
Q 038521 206 FQSKRLAREKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSRVIITARDK-QVLTNC--------EIDHIYQMKELVH 271 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~~~---~~~-~~l~~~~~~-~~~GSrIIiTTR~~-~v~~~~--------~~~~~~~v~~L~~ 271 (324)
.+++.+++ -=+|+||||... ..| +.+...++. ...|.+||+|+... .-+... ...-+++++++++
T Consensus 90 ~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~ 168 (219)
T PF00308_consen 90 EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDD 168 (219)
T ss_dssp HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----H
T ss_pred hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCH
Confidence 34445553 447899999743 223 222222221 13577999999543 222222 2345899999999
Q ss_pred hhHHHHHHHhhcC
Q 038521 272 ANALKLFTQCAFR 284 (324)
Q Consensus 272 ~es~~LF~~~af~ 284 (324)
++-.+++...|-.
T Consensus 169 ~~r~~il~~~a~~ 181 (219)
T PF00308_consen 169 EDRRRILQKKAKE 181 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998853
No 83
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=58.54 E-value=41 Score=31.51 Aligned_cols=67 Identities=7% Similarity=0.170 Sum_probs=46.2
Q ss_pred CcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCChhhHHHHHHHh
Q 038521 215 KVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 215 r~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~~~es~~LF~~~ 281 (324)
+=.+|+|++. +....+.|...+..-.+++.+|+||.+.. ++...- --..+.+.+++.++..+.+...
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 3344679998 45667777777665456778888887654 443321 1356899999999999888765
No 84
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=57.87 E-value=83 Score=24.05 Aligned_cols=66 Identities=24% Similarity=0.118 Sum_probs=46.7
Q ss_pred CchHHHHHHHHhcCCceEEEeC--CCC-------CcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHH
Q 038521 28 DNFTSHLFSALFQNNIETFIDN--DLK-------RGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILE 94 (324)
Q Consensus 28 ~~f~~~L~~~L~~~g~~~f~d~--~~~-------~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~ 94 (324)
..+...+.+.|+..|+.+|... +.. ....|...-.++|++|++.|+++...-.++. +.-|+..+..
T Consensus 13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~~d~G-t~~ElG~A~a 87 (113)
T PF05014_consen 13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFRPDSG-TAFELGYAYA 87 (113)
T ss_dssp HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS--HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCCCCc-HHHHHHHHHH
Confidence 5688999999999999888754 221 1224555567889999999999998764444 5567766554
No 85
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.85 E-value=26 Score=33.71 Aligned_cols=70 Identities=7% Similarity=0.102 Sum_probs=46.5
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhcC-CcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNCE-IDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++-++|+|++.. ...++.|...+....+.+.+|++| +...+..... ....++++++++++..+.+...+
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 4556889999974 456788877776655677776655 4344443221 12468899999888877766654
No 86
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.49 E-value=52 Score=33.71 Aligned_cols=69 Identities=13% Similarity=0.247 Sum_probs=46.9
Q ss_pred CCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHhh
Q 038521 214 EKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 214 kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
++=++|+|++.. ...++.|...+.....++.+|++| ....+.... ....++++++++.++-...+...+
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia 193 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVA 193 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHH
Confidence 445789999874 456777777776555667766554 545554433 223678999999998887777655
No 87
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=57.15 E-value=22 Score=30.06 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCc-EEEEecCCCHH-----HHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEeccC
Q 038521 204 VNFQSKRLAREKV-LIVFDDVNHPR-----QIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKEL 269 (324)
Q Consensus 204 ~~~l~~~L~~kr~-LlVLDDV~~~~-----~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~L 269 (324)
.+..++.+...+| |||||.+...- ..+.+...+....++.-||+|-|+..-.-.--++.+.+|...
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VTEm~~v 157 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVTEMRPV 157 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceeeeeccc
Confidence 3444555555444 99999985221 223333333333467799999997642111124555666553
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=56.58 E-value=39 Score=32.46 Aligned_cols=68 Identities=13% Similarity=0.248 Sum_probs=40.1
Q ss_pred cEEEEecCCCH---HH-HHHHHhcCCC-CCCCCeEEEEcCCc-h--------hhhhcCCcceEEeccCChhhHHHHHHHh
Q 038521 216 VLIVFDDVNHP---RQ-IELLIGRLDR-FASGSRVIITARDK-Q--------VLTNCEIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 216 ~LlVLDDV~~~---~~-~~~l~~~~~~-~~~GSrIIiTTR~~-~--------v~~~~~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
-+|+|||+... +. -+.+...+.. ...|..+|+||... . +...+....+.++++.+.++-..++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 48999999732 11 1223332221 12456688877542 2 2222222346889999999999998888
Q ss_pred hc
Q 038521 282 AF 283 (324)
Q Consensus 282 af 283 (324)
+-
T Consensus 281 ~~ 282 (405)
T TIGR00362 281 AE 282 (405)
T ss_pred HH
Confidence 74
No 89
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=56.57 E-value=24 Score=30.32 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCC-cEEEEecCCCHH-----HHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEeccC
Q 038521 204 VNFQSKRLAREK-VLIVFDDVNHPR-----QIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKEL 269 (324)
Q Consensus 204 ~~~l~~~L~~kr-~LlVLDDV~~~~-----~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~L 269 (324)
.+..++.+...+ =|||||.+...- ..+.+...+...-++.-||+|-|+..-.-.--++.+.++.+.
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~v 175 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRPV 175 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheecccc
Confidence 344455554444 499999986322 234444444433467799999997642111113455565553
No 90
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=55.94 E-value=36 Score=29.41 Aligned_cols=64 Identities=22% Similarity=0.274 Sum_probs=46.5
Q ss_pred CCCCccEEecCccccCCCchHHHHHHHHh-cCCceE-EEeCCCCCcccchHHHHHHHhhcceEEEEEecCc
Q 038521 11 DKKMHDVFVSFRGEDTRDNFTSHLFSALF-QNNIET-FIDNDLKRGDEISESLLGTIEASTISIIIFSEKY 79 (324)
Q Consensus 11 ~~~~~dvFis~~g~D~~~~f~~~L~~~L~-~~g~~~-f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y 79 (324)
++.+ .|||-|+.+- -+.....+|. +....+ +.|.-...|..+-+.+.+-|.+++.+|++++|+=
T Consensus 80 p~~k-kvFvv~ghd~----iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDD 145 (233)
T COG4271 80 PNLK-KVFVVSGHDA----IARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDD 145 (233)
T ss_pred CCce-eEEEEeccHH----HHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcc
Confidence 4445 8999965543 3444444554 455444 4444778899999999999999999999999983
No 91
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=55.66 E-value=28 Score=29.56 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=34.7
Q ss_pred HHHHHHhcC-CCcEEEEecCCCHH-----HHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec
Q 038521 205 NFQSKRLAR-EKVLIVFDDVNHPR-----QIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK 267 (324)
Q Consensus 205 ~~l~~~L~~-kr~LlVLDDV~~~~-----~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~ 267 (324)
+..++.+.. +-=|||||.+...- ..+.+...+...-++.-||+|-|+..=.-.--++.+.++.
T Consensus 105 ~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD~VTEm~ 173 (178)
T PRK07414 105 QYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIADQITELR 173 (178)
T ss_pred HHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCCeeeeee
Confidence 344455544 44599999985321 2333444444334677999999975421111245555554
No 92
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=55.31 E-value=1.3e+02 Score=26.76 Aligned_cols=67 Identities=6% Similarity=0.129 Sum_probs=42.6
Q ss_pred CcEEEEecCCC----------HHHHHHHHhcCCCCCCCCeEEEEcCCchh----------hhhcCCcceEEeccCChhhH
Q 038521 215 KVLIVFDDVNH----------PRQIELLIGRLDRFASGSRVIITARDKQV----------LTNCEIDHIYQMKELVHANA 274 (324)
Q Consensus 215 r~LlVLDDV~~----------~~~~~~l~~~~~~~~~GSrIIiTTR~~~v----------~~~~~~~~~~~v~~L~~~es 274 (324)
..+|+||++.. .++.+.|..........-.+|+++..... ... ....++++.++.+|-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHH
Confidence 35889999974 23556666655543333455666544332 111 234678999999999
Q ss_pred HHHHHHhhc
Q 038521 275 LKLFTQCAF 283 (324)
Q Consensus 275 ~~LF~~~af 283 (324)
.+++.+.+-
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999987764
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.80 E-value=39 Score=33.90 Aligned_cols=70 Identities=9% Similarity=0.145 Sum_probs=44.7
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhcC-CcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITARDK-QVLTNCE-IDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~~-~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++-++|+|++... ...+.|...+......+.+|++|.+. .+..... --..+++++++.++-.+.+...+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45668999999854 45777777776555566777666543 3332211 12567888888888776665544
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.10 E-value=63 Score=32.13 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=47.9
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcC-Cchhhhhc-CCcceEEeccCChhhHHHHHHHhhc
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITAR-DKQVLTNC-EIDHIYQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR-~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af 283 (324)
+++-++|+|++.. ....+.|...+....+.+++|++|. ...+...+ .....+++++++.++-...+...+-
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~ 189 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAK 189 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHH
Confidence 4556899999974 4567778777766556777776664 33443322 1235789999999888887777664
No 95
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=52.67 E-value=63 Score=33.01 Aligned_cols=90 Identities=8% Similarity=0.106 Sum_probs=54.3
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
+++-++|+|++.. ....+.|...+....+.+.+|++| ....+...+. -...+++..++.++....+...+-+.. .
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3455789999974 355777777666555667766555 4444443321 225789999999988888777653222 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. .+....|++.++|
T Consensus 211 i~---~eAl~lIa~~a~G 225 (598)
T PRK09111 211 VE---DEALALIARAAEG 225 (598)
T ss_pred CC---HHHHHHHHHHcCC
Confidence 11 1334455566665
No 96
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.38 E-value=1.1e+02 Score=31.42 Aligned_cols=70 Identities=7% Similarity=0.096 Sum_probs=45.5
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++-++|+|++... ...+.|...+....+.+.+|++| +-..+.... .....+++.+++.++....+...+
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHH
Confidence 44557899999754 45777777766544566665554 444444332 224678999999988777666544
No 97
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=51.93 E-value=1.6e+02 Score=25.46 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=37.2
Q ss_pred CcEEEEecCCCH--HHHHHHHhcCCCC-CCCC-eEEEEcCCchhhh--------hcCCcceEEeccCChhhHHHHHHHh
Q 038521 215 KVLIVFDDVNHP--RQIELLIGRLDRF-ASGS-RVIITARDKQVLT--------NCEIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 215 r~LlVLDDV~~~--~~~~~l~~~~~~~-~~GS-rIIiTTR~~~v~~--------~~~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
.-+|++||+... .+-+.|...+... ..|. .+|+|++...... .+.....+++++|++++-..++...
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 457999999643 3333343333211 2344 3666666433211 2222357899999998766666553
No 98
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=51.30 E-value=55 Score=34.79 Aligned_cols=71 Identities=10% Similarity=0.208 Sum_probs=47.5
Q ss_pred cCCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcC-CchhhhhcC-CcceEEeccCChhhHHHHHHHhh
Q 038521 212 AREKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITAR-DKQVLTNCE-IDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 212 ~~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR-~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~a 282 (324)
.+++-++|||++. +....+.|+..+......+.+|++|. ...+...+. -...|++..|+.++-.+.+.+..
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 3455578899998 44667888877776666777666554 334544332 23678999999888777766543
No 99
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=51.22 E-value=36 Score=24.91 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=31.5
Q ss_pred CchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHh-hcceEEEE
Q 038521 28 DNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIE-ASTISIII 74 (324)
Q Consensus 28 ~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~-~s~~~i~v 74 (324)
..++..|...|++.||++.+|+ .+..+...+..|-. +....|+|
T Consensus 15 ~~~a~~l~~~L~~~gi~v~~d~---~~~~~~k~~~~a~~~g~p~~iii 59 (94)
T PF03129_consen 15 IEYAQELANKLRKAGIRVELDD---SDKSLGKQIKYADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHHHHHHHHTTSEEEEES---SSSTHHHHHHHHHHTTESEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEC---CCCchhHHHHHHhhcCCeEEEEE
Confidence 4588999999999999999997 34456566666643 44444444
No 100
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=50.21 E-value=43 Score=24.90 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=43.9
Q ss_pred EEecCccccCCCchHHHHHHHHhcCCceEEEeC-CCCC-------cccchHHHHHHHhhcceEEEEEecCcc
Q 038521 17 VFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKR-------GDEISESLLGTIEASTISIIIFSEKYA 80 (324)
Q Consensus 17 vFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~-------g~~~~~~~~~~i~~s~~~i~v~S~~y~ 80 (324)
+|.|..|.-.+.+++.+|...|.++|.++..-| +... +-...+....++..|...|++..+...
T Consensus 3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~ 74 (104)
T cd02042 3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPL 74 (104)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHH
Confidence 477878776677889999999999998876654 4321 112344455777788888777766543
No 101
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=48.71 E-value=1.6e+02 Score=28.73 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=41.6
Q ss_pred CCCcEEEEecCCCH---HHH-HHHHhcCCC-CCCCCeEEEEcC-Cchhhh--------hcCCcceEEeccCChhhHHHHH
Q 038521 213 REKVLIVFDDVNHP---RQI-ELLIGRLDR-FASGSRVIITAR-DKQVLT--------NCEIDHIYQMKELVHANALKLF 278 (324)
Q Consensus 213 ~kr~LlVLDDV~~~---~~~-~~l~~~~~~-~~~GSrIIiTTR-~~~v~~--------~~~~~~~~~v~~L~~~es~~LF 278 (324)
.+.-+|+|||+... ..+ +.+...+.. ...|..||+||. ...-+. .+...-+.++++.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 34558999999732 111 222222211 123557888874 332221 1223457789999999999998
Q ss_pred HHhhc
Q 038521 279 TQCAF 283 (324)
Q Consensus 279 ~~~af 283 (324)
.+.+-
T Consensus 273 ~~~~~ 277 (440)
T PRK14088 273 RKMLE 277 (440)
T ss_pred HHHHH
Confidence 88874
No 102
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=48.47 E-value=1.5e+02 Score=28.68 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=44.5
Q ss_pred cCCCcEEEEecCCCH-------------H---HHHHHHhcCCCC--CCCCeEEEEcCCchhhhhc-----CCcceEEecc
Q 038521 212 AREKVLIVFDDVNHP-------------R---QIELLIGRLDRF--ASGSRVIITARDKQVLTNC-----EIDHIYQMKE 268 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~-------------~---~~~~l~~~~~~~--~~GSrIIiTTR~~~v~~~~-----~~~~~~~v~~ 268 (324)
...+.+|+||+++.. . .+..+...+..+ ..+-.||.||...+.+... ..+..++++.
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 457889999998632 0 122233333322 2356788888766543221 2456789999
Q ss_pred CChhhHHHHHHHhh
Q 038521 269 LVHANALKLFTQCA 282 (324)
Q Consensus 269 L~~~es~~LF~~~a 282 (324)
.+.++-.++|..+.
T Consensus 316 P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 316 PDRRQKRLIFQTIT 329 (398)
T ss_pred cCHHHHHHHHHHHH
Confidence 99998888888665
No 103
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.54 E-value=88 Score=31.82 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=54.2
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARD-KQVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
+++-++|+|++.. ....+.|...+......+.+|++|.+ ..+.... .....++++.++..+-...+...+-... .
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 3456899999974 45677777766554556777666643 3333322 1224678888988888877776654322 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. .+....+++.|+|
T Consensus 199 i~---~eal~~La~~s~G 213 (585)
T PRK14950 199 LE---PGALEAIARAATG 213 (585)
T ss_pred CC---HHHHHHHHHHcCC
Confidence 12 2334456666666
No 104
>COG0400 Predicted esterase [General function prediction only]
Probab=47.23 E-value=61 Score=28.22 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=44.2
Q ss_pred CCCCCccEEecCccccC--CCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhh
Q 038521 10 NDKKMHDVFVSFRGEDT--RDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEA 67 (324)
Q Consensus 10 ~~~~~~dvFis~~g~D~--~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~ 67 (324)
+.....-|||+|-..|. ......+|.+.|+..|..+.... .+-|-++.++-.+++++
T Consensus 142 ~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~-~~~GH~i~~e~~~~~~~ 200 (207)
T COG0400 142 PDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRW-HEGGHEIPPEELEAARS 200 (207)
T ss_pred cccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEE-ecCCCcCCHHHHHHHHH
Confidence 34567789999999985 56789999999999999998875 33677777766666543
No 105
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=46.42 E-value=61 Score=23.35 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=37.6
Q ss_pred ccEEecCcccc--CCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecC
Q 038521 15 HDVFVSFRGED--TRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEK 78 (324)
Q Consensus 15 ~dvFis~~g~D--~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 78 (324)
++|+|-.-+.+ .....+-.+...|+..|+.+-+|. .+..+...+..|-...--+++++.++
T Consensus 2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~---~~~~~~k~~~~a~~~g~~~~iiig~~ 64 (94)
T cd00738 2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD---RERKIGKKFREADLRGVPFAVVVGED 64 (94)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC---CCcCHhHHHHHHHhCCCCEEEEECCC
Confidence 56666544330 124477788999999999999876 23455555555544433456666653
No 106
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=46.39 E-value=1.5e+02 Score=30.01 Aligned_cols=72 Identities=7% Similarity=0.164 Sum_probs=47.3
Q ss_pred cCCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhc-CCcceEEeccCChhhHHHHHHHhhc
Q 038521 212 AREKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARD-KQVLTNC-EIDHIYQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 212 ~~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af 283 (324)
.+++-++|+|++.. ...++.|...+....+.+.+|++|.+ ..+.... .....++..+++.++-.+.+...+.
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~ 192 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCL 192 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHH
Confidence 35566889999974 45678888777655566677666643 3333222 1124688999998888777776654
No 107
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=46.21 E-value=46 Score=32.50 Aligned_cols=69 Identities=10% Similarity=0.188 Sum_probs=42.1
Q ss_pred CcEEEEecCCCH---H-HHHHHHhcCCC-CCCCCeEEEEcCCch---------hhhhcCCcceEEeccCChhhHHHHHHH
Q 038521 215 KVLIVFDDVNHP---R-QIELLIGRLDR-FASGSRVIITARDKQ---------VLTNCEIDHIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 215 r~LlVLDDV~~~---~-~~~~l~~~~~~-~~~GSrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~es~~LF~~ 280 (324)
--+|+||||... + .-+.+...+.. ...|..||+||.... +...+....++++++++.++-..++..
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 448999999632 1 12233332221 123556888886432 222333345789999999999999998
Q ss_pred hhc
Q 038521 281 CAF 283 (324)
Q Consensus 281 ~af 283 (324)
.+-
T Consensus 292 ~~~ 294 (450)
T PRK00149 292 KAE 294 (450)
T ss_pred HHH
Confidence 874
No 108
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.52 E-value=92 Score=31.10 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=43.5
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhc-CCcceEEeccCChhhHHHHHHHh
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDK-QVLTNC-EIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
++.-++++|+|.. ....++|...+...-+.+++|++|.+. .+.... .-...+++++++.++-...+...
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~i 190 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHL 190 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHH
Confidence 4556889999984 466777777766555677777666443 333221 11246788889887766554433
No 109
>CHL00181 cbbX CbbX; Provisional
Probab=45.30 E-value=1.9e+02 Score=26.46 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=46.4
Q ss_pred CcEEEEecCCC-----------HHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhc--------CCcceEEeccCChhhHH
Q 038521 215 KVLIVFDDVNH-----------PRQIELLIGRLDRFASGSRVIITARDKQVLTNC--------EIDHIYQMKELVHANAL 275 (324)
Q Consensus 215 r~LlVLDDV~~-----------~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~--------~~~~~~~v~~L~~~es~ 275 (324)
.-+|+||++.. .+..+.|...+.....+.+||.++....+.... .....++.++++.+|-.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 35899999964 234555655555545566788888654432111 12457899999999999
Q ss_pred HHHHHhhcC
Q 038521 276 KLFTQCAFR 284 (324)
Q Consensus 276 ~LF~~~af~ 284 (324)
+++...+-+
T Consensus 203 ~I~~~~l~~ 211 (287)
T CHL00181 203 QIAKIMLEE 211 (287)
T ss_pred HHHHHHHHH
Confidence 998887743
No 110
>COG3899 Predicted ATPase [General function prediction only]
Probab=45.25 E-value=1.1e+02 Score=32.68 Aligned_cols=111 Identities=17% Similarity=0.201 Sum_probs=60.2
Q ss_pred HHHHHHhc-CCCcEEEEecC-C-CHHHHHH---HHhcCCC-CCCCCeEEEEcCCchhhh----hcCCcceEEeccCChhh
Q 038521 205 NFQSKRLA-REKVLIVFDDV-N-HPRQIEL---LIGRLDR-FASGSRVIITARDKQVLT----NCEIDHIYQMKELVHAN 273 (324)
Q Consensus 205 ~~l~~~L~-~kr~LlVLDDV-~-~~~~~~~---l~~~~~~-~~~GSrIIiTTR~~~v~~----~~~~~~~~~v~~L~~~e 273 (324)
..|..... .|+..+|+||+ | |...++- ++...+- .-.-..|..+........ .-..-..+.+.||+..+
T Consensus 144 ~~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d 223 (849)
T COG3899 144 RFIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRAD 223 (849)
T ss_pred HHHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhh
Confidence 34444444 45999999999 4 3333333 3333220 000112322222222211 11123678999999999
Q ss_pred HHHHHHHhhcCCCCCChhHHHHHHHHHHHccccccCCc--hHHHHHhhhhh
Q 038521 274 ALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQVIQTSP--WPKILRLCYYT 322 (324)
Q Consensus 274 s~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gll~~~~--~~~il~~cy~~ 322 (324)
...|.....-....+ ..++.+.|+++.+| || ...++++=|++
T Consensus 224 ~~~lV~~~l~~~~~~---~~p~~~~i~~kt~G----nPfFi~e~lk~l~~~ 267 (849)
T COG3899 224 TNQLVAATLGCTKLL---PAPLLELIFEKTKG----NPFFIEEFLKALYEE 267 (849)
T ss_pred HHHHHHHHhCCcccc---cchHHHHHHHHhcC----CCccHHHHHHHHHhC
Confidence 999887665221222 34567788888888 55 55666665553
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=45.16 E-value=95 Score=32.46 Aligned_cols=91 Identities=5% Similarity=0.047 Sum_probs=53.8
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|+|++. +...+.+|...+....+...+|++| +...+.... .....+++.+++.++-...+...+-.....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 556688999997 4456778877766544555655554 444444332 123578999999998887777654221111
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. -.+....+++.++|
T Consensus 197 i--d~eAl~~LA~lS~G 211 (725)
T PRK07133 197 Y--EKNALKLIAKLSSG 211 (725)
T ss_pred C--CHHHHHHHHHHcCC
Confidence 0 01234455666665
No 112
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=44.79 E-value=58 Score=25.38 Aligned_cols=61 Identities=11% Similarity=-0.036 Sum_probs=40.9
Q ss_pred CccEEecCcc--ccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCc
Q 038521 14 MHDVFVSFRG--EDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKY 79 (324)
Q Consensus 14 ~~dvFis~~g--~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y 79 (324)
.+||||-.-+ ++ ....+-.+...|+.+|+++-+|.. ..+...+..|-+.---.++++.++-
T Consensus 26 p~~v~Ii~~~~~~~-~~~~a~~la~~LR~~gi~v~~d~~----~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 26 PIKVAVLPLVKRDE-LVEIAKEISEELRELGFSVKYDDS----GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred CcEEEEEecCCcHH-HHHHHHHHHHHHHHCCCEEEEeCC----CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 5788887666 32 234677889999999999999853 3566666666444444455555543
No 113
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=44.69 E-value=1.1e+02 Score=28.39 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=46.0
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhcC-CcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNCE-IDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++-++|+|++.. ....++|...+.... .+.+|++| .-..++.... -...++++++++++..+.+....
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 4566889999874 455677777665444 34555555 4444544432 23678999999999999888764
No 114
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=44.27 E-value=38 Score=29.16 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCc-EEEEecCC-----CHHHHHHHHhcCCCCCCCCeEEEEcCCch
Q 038521 204 VNFQSKRLAREKV-LIVFDDVN-----HPRQIELLIGRLDRFASGSRVIITARDKQ 253 (324)
Q Consensus 204 ~~~l~~~L~~kr~-LlVLDDV~-----~~~~~~~l~~~~~~~~~GSrIIiTTR~~~ 253 (324)
-+.-++.+.+.+| |+|||.+. ..-.++.+...+...-....||+|-|.-.
T Consensus 111 w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 111 WEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 3444556666555 99999985 22334555444444446789999998754
No 115
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.21 E-value=1.7e+02 Score=29.89 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=55.5
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|+|++. +....+.|...+........+|++| ....+...+ .-...++...++.++..+.+...+-.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 455588999997 4567788877777655666666555 444444332 123678999999998887776655322211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
.+ .+...-|++.++|
T Consensus 197 i~--~~al~~Ia~~s~G 211 (584)
T PRK14952 197 VD--DAVYPLVIRAGGG 211 (584)
T ss_pred CC--HHHHHHHHHHcCC
Confidence 10 1233445666666
No 116
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=42.33 E-value=1.1e+02 Score=21.01 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHHHHHhcCCeE
Q 038521 32 SHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIV 103 (324)
Q Consensus 32 ~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~~~~~~~v 103 (324)
..|+.-|++.|+.+-..+. . .++++...-.++++++.+.-+. ..++..+.+-.+.++..|
T Consensus 8 ~a~~~~L~~~g~~v~~~~~------~----~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lv 67 (70)
T PF14258_consen 8 YALYQLLEEQGVKVERWRK------P----YEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLV 67 (70)
T ss_pred HHHHHHHHHCCCeeEEecc------c----HHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEE
Confidence 4678888889998854321 1 2234557778899999955543 344444444434444433
No 117
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=40.94 E-value=38 Score=28.58 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=30.9
Q ss_pred HHHHHHHhcCC-CcEEEEecCCCHH-----HHHHHHhcCCCCCCCCeEEEEcCCch--hhhhcCCcceEEeccC
Q 038521 204 VNFQSKRLARE-KVLIVFDDVNHPR-----QIELLIGRLDRFASGSRVIITARDKQ--VLTNCEIDHIYQMKEL 269 (324)
Q Consensus 204 ~~~l~~~L~~k-r~LlVLDDV~~~~-----~~~~l~~~~~~~~~GSrIIiTTR~~~--v~~~~~~~~~~~v~~L 269 (324)
.+..++.+... -=|||||.|...- ..+.+...+....++.-||+|-|+.. +... ++.+-+|...
T Consensus 85 ~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~--ADlVTem~~v 156 (172)
T PF02572_consen 85 LEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA--ADLVTEMREV 156 (172)
T ss_dssp HHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH---SEEEEEEEC
T ss_pred HHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh--CCeeeeecee
Confidence 34455566544 4499999985221 22333333333346789999999875 2222 3455555543
No 118
>CHL00176 ftsH cell division protein; Validated
Probab=40.17 E-value=2.6e+02 Score=28.85 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=47.9
Q ss_pred HHHHhcCCCcEEEEecCCCH----------------HHHHHHHhcCCCC--CCCCeEEEEcCCchhhhh-----cCCcce
Q 038521 207 QSKRLAREKVLIVFDDVNHP----------------RQIELLIGRLDRF--ASGSRVIITARDKQVLTN-----CEIDHI 263 (324)
Q Consensus 207 l~~~L~~kr~LlVLDDV~~~----------------~~~~~l~~~~~~~--~~GSrIIiTTR~~~v~~~-----~~~~~~ 263 (324)
+.....+..++|+|||++.. ..+..|...++.+ ..|-.||.||...+.+.. ...+..
T Consensus 268 F~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~ 347 (638)
T CHL00176 268 FKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQ 347 (638)
T ss_pred HHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceE
Confidence 44444567899999999633 1133444333322 245567777766554332 123567
Q ss_pred EEeccCChhhHHHHHHHhhc
Q 038521 264 YQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 264 ~~v~~L~~~es~~LF~~~af 283 (324)
+.++..+.++-.+++..++-
T Consensus 348 I~v~lPd~~~R~~IL~~~l~ 367 (638)
T CHL00176 348 ITVSLPDREGRLDILKVHAR 367 (638)
T ss_pred EEECCCCHHHHHHHHHHHHh
Confidence 88888898888888888763
No 119
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=39.95 E-value=1.2e+02 Score=29.98 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=43.3
Q ss_pred hcCCCcEEEEecCCCHH----------------HHHHHHhcCCCC--CCCCeEEEEcCCchhhh-----hcCCcceEEec
Q 038521 211 LAREKVLIVFDDVNHPR----------------QIELLIGRLDRF--ASGSRVIITARDKQVLT-----NCEIDHIYQMK 267 (324)
Q Consensus 211 L~~kr~LlVLDDV~~~~----------------~~~~l~~~~~~~--~~GSrIIiTTR~~~v~~-----~~~~~~~~~v~ 267 (324)
....+.+|+|||++... .+..+...+..+ ..+-.||.||.....+. ....+..++++
T Consensus 144 ~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~ 223 (495)
T TIGR01241 144 KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVD 223 (495)
T ss_pred HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcC
Confidence 34567899999995421 122233333222 23445677776544222 12245678899
Q ss_pred cCChhhHHHHHHHhhc
Q 038521 268 ELVHANALKLFTQCAF 283 (324)
Q Consensus 268 ~L~~~es~~LF~~~af 283 (324)
..+.++-.++|..+.-
T Consensus 224 ~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 224 LPDIKGREEILKVHAK 239 (495)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9998888888887763
No 120
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=38.84 E-value=2e+02 Score=26.15 Aligned_cols=76 Identities=14% Similarity=0.280 Sum_probs=45.0
Q ss_pred HHHHHHHh--cCCCcEEEEecCCC--HHH----HHHHHhcCCCCCCCCeEEEEcCCchhhhhc----C------------
Q 038521 204 VNFQSKRL--AREKVLIVFDDVNH--PRQ----IELLIGRLDRFASGSRVIITARDKQVLTNC----E------------ 259 (324)
Q Consensus 204 ~~~l~~~L--~~kr~LlVLDDV~~--~~~----~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~----~------------ 259 (324)
...+.+.| .++|.+|++||++. +++ |+.+...+. .++..+|+..-.+.+.... +
T Consensus 160 ~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~--~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 160 ISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD--FPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred HHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcC--CCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 34444444 45899999999984 333 444444333 2676666666444443322 1
Q ss_pred ---CcceEEeccCChhhHHHHHHHh
Q 038521 260 ---IDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 260 ---~~~~~~v~~L~~~es~~LF~~~ 281 (324)
.+..+.+++++..+-..+|...
T Consensus 238 eKiiq~~~~lP~~~~~~~~~~~~~~ 262 (325)
T PF07693_consen 238 EKIIQVPFSLPPPSPSDLERYLNEL 262 (325)
T ss_pred HhhcCeEEEeCCCCHHHHHHHHHHH
Confidence 1346888988887766666555
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=38.66 E-value=45 Score=32.02 Aligned_cols=109 Identities=17% Similarity=0.251 Sum_probs=59.6
Q ss_pred eeeeeccccccccCCHHHHHHHHHHhhh-cC-C----CC--ccchhccHHHHHH--Hhc--CCCcEEEEecCCCHHHHHH
Q 038521 164 SYFAHNVRSAEETGRLDDLRKELLSKLL-ND-W----NV--RNFQNINVNFQSK--RLA--REKVLIVFDDVNHPRQIEL 231 (324)
Q Consensus 164 ~~wv~~v~~vs~~~~~~~l~~~il~~l~-~~-~----~~--~~~~~~~~~~l~~--~L~--~kr~LlVLDDV~~~~~~~~ 231 (324)
.+|++ .-..+....+.+.|+.+.. .. + +. .++.. ....+.+ ... ++.++||||+++...+.++
T Consensus 58 ~vw~n----~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d-~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 58 NVWLN----CVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSD-FIYLLVQWPAATNRDQKVFLILDNADALRDMDA 132 (438)
T ss_pred ceeee----hHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHH-HHHHHHhhHHhhccCceEEEEEcCHHhhhccch
Confidence 47998 8888999999999999984 22 1 11 11222 2223332 222 3589999999987665444
Q ss_pred HH--------hcCCCCCCCCeEEEEcCC---chhhhhcCCc--ceEEeccCChhhHHHHHHH
Q 038521 232 LI--------GRLDRFASGSRVIITARD---KQVLTNCEID--HIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 232 l~--------~~~~~~~~GSrIIiTTR~---~~v~~~~~~~--~~~~v~~L~~~es~~LF~~ 280 (324)
+. ..++ .+ .-+|+++-- ++-...+|.. .+...+.-+.+|-.+++.+
T Consensus 133 ~ll~~l~~L~el~~--~~-~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 133 ILLQCLFRLYELLN--EP-TIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHHHHHHHHHHHhC--CC-ceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 32 1222 12 233333322 1222223432 2445566777777776654
No 122
>PRK08116 hypothetical protein; Validated
Probab=38.16 E-value=22 Score=32.23 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=24.2
Q ss_pred HHHhcCCCcEEEEecCC--CHHHH--HHHHhcCCC-CCCCCeEEEEcCCc
Q 038521 208 SKRLAREKVLIVFDDVN--HPRQI--ELLIGRLDR-FASGSRVIITARDK 252 (324)
Q Consensus 208 ~~~L~~kr~LlVLDDV~--~~~~~--~~l~~~~~~-~~~GSrIIiTTR~~ 252 (324)
.+.+.+-. ||||||+. ....| +.|...++. ...|..+|+||...
T Consensus 173 ~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 173 IRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 34444433 89999993 22333 223333321 24567899999643
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.86 E-value=1.5e+02 Score=29.48 Aligned_cols=70 Identities=6% Similarity=0.115 Sum_probs=44.3
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++-++|+|++.. ....+.|...+....+...+|++| +...+.... .....+++.+++.++-...+...+
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH
Confidence 4566899999974 355677776665544556666555 433333221 122468889999888877777654
No 124
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=37.82 E-value=1.2e+02 Score=31.06 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=52.6
Q ss_pred CcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcC-Cchhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-CCC
Q 038521 215 KVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITAR-DKQVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-HLD 289 (324)
Q Consensus 215 r~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR-~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~~~ 289 (324)
+=++|+|++.. ...+++|...+....+.+.+|++|. -..+.... .....+++.+++.++....+...+-... ..+
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is 199 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE 199 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 34699999974 4567777776654445666665553 33333221 1235789999999998887776553222 111
Q ss_pred hhHHHHHHHHHHHccc
Q 038521 290 AGYTALAHKAFSTRTQ 305 (324)
Q Consensus 290 ~~~~~l~~~iv~~c~G 305 (324)
.+....+++.++|
T Consensus 200 ---~eal~~La~lS~G 212 (605)
T PRK05896 200 ---DNAIDKIADLADG 212 (605)
T ss_pred ---HHHHHHHHHHcCC
Confidence 2234456666666
No 125
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=37.81 E-value=1.3e+02 Score=28.01 Aligned_cols=85 Identities=11% Similarity=0.103 Sum_probs=53.5
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARD-KQVLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++=++|+|++.. ...-.+|...+..-.+++.+|++|.+ ..++..+- --..+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 4456889999984 45566677666655567877777765 44444432 13567888999998888776531 11
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. .-+..++..++|
T Consensus 188 ~----~~a~~~~~l~~G 200 (319)
T PRK08769 188 E----RAAQEALDAARG 200 (319)
T ss_pred h----HHHHHHHHHcCC
Confidence 1 114455667776
No 126
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.58 E-value=62 Score=30.75 Aligned_cols=43 Identities=28% Similarity=0.393 Sum_probs=28.2
Q ss_pred cCCCcEEEEecCCC---HHHHHHHHhcCCCCCCCCeEEEEcCCchhhh
Q 038521 212 AREKVLIVFDDVNH---PRQIELLIGRLDRFASGSRVIITARDKQVLT 256 (324)
Q Consensus 212 ~~kr~LlVLDDV~~---~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~ 256 (324)
.++.-+++|||+-. ..--+.+...+... |..|+|||.+.....
T Consensus 300 ~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 300 GGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred cCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 45678999999973 33344455554322 668999998776544
No 127
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=37.30 E-value=3.4e+02 Score=25.15 Aligned_cols=138 Identities=10% Similarity=0.071 Sum_probs=76.1
Q ss_pred ceeeeeccccccccCCHHHHHHHHHHhhhcC-CCCccchhccHHHHHHHhcCC-CcEEEEecCCCH-----HHHHHHHhc
Q 038521 163 GSYFAHNVRSAEETGRLDDLRKELLSKLLND-WNVRNFQNINVNFQSKRLARE-KVLIVFDDVNHP-----RQIELLIGR 235 (324)
Q Consensus 163 ~~~wv~~v~~vs~~~~~~~l~~~il~~l~~~-~~~~~~~~~~~~~l~~~L~~k-r~LlVLDDV~~~-----~~~~~l~~~ 235 (324)
.++-|. ....++...+...||..+... ..-.+... ........|+.- -=+||+|.+.+. .+-..+...
T Consensus 97 PVv~vq----~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~-~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~ 171 (302)
T PF05621_consen 97 PVVYVQ----MPPEPDERRFYSAILEALGAPYRPRDRVAK-LEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNA 171 (302)
T ss_pred cEEEEe----cCCCCChHHHHHHHHHHhCcccCCCCCHHH-HHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHH
Confidence 344566 777899999999999999766 33334444 455555566553 348899999643 111222222
Q ss_pred CC---CCCCCCeEEEEcCC--------chhhhhcCCcceEEeccCChh-hHHHHHHHhhc--CCCCCC-hhHHHHHHHHH
Q 038521 236 LD---RFASGSRVIITARD--------KQVLTNCEIDHIYQMKELVHA-NALKLFTQCAF--RRDHLD-AGYTALAHKAF 300 (324)
Q Consensus 236 ~~---~~~~GSrIIiTTR~--------~~v~~~~~~~~~~~v~~L~~~-es~~LF~~~af--~~~~~~-~~~~~l~~~iv 300 (324)
+. +.-.=+-|.+-|++ .+++... .++.++.-..+ |...|+....- .=..+. -...++++.|.
T Consensus 172 LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~ 248 (302)
T PF05621_consen 172 LKFLGNELQIPIVGVGTREAYRALRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIH 248 (302)
T ss_pred HHHHhhccCCCeEEeccHHHHHHhccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 21 11223445555543 3333332 35566665544 44444433221 111111 23478999999
Q ss_pred HHcccccc
Q 038521 301 STRTQVIQ 308 (324)
Q Consensus 301 ~~c~Gll~ 308 (324)
..++|++.
T Consensus 249 ~~s~G~iG 256 (302)
T PF05621_consen 249 ERSEGLIG 256 (302)
T ss_pred HHcCCchH
Confidence 99999664
No 128
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=37.16 E-value=53 Score=32.17 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=41.1
Q ss_pred CcEEEEecCCCHH----HHHHHHhcCCC-CCCCCeEEEEcCCc-h--------hhhhcCCcceEEeccCChhhHHHHHHH
Q 038521 215 KVLIVFDDVNHPR----QIELLIGRLDR-FASGSRVIITARDK-Q--------VLTNCEIDHIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 215 r~LlVLDDV~~~~----~~~~l~~~~~~-~~~GSrIIiTTR~~-~--------v~~~~~~~~~~~v~~L~~~es~~LF~~ 280 (324)
.-+|+|||+.... .-+.+...++. ...|..||+||... . +...+....++++++++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 4588999986431 11222222211 12456788888542 1 222233346788999999999999888
Q ss_pred hhc
Q 038521 281 CAF 283 (324)
Q Consensus 281 ~af 283 (324)
++-
T Consensus 283 k~~ 285 (445)
T PRK12422 283 KAE 285 (445)
T ss_pred HHH
Confidence 773
No 129
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=36.92 E-value=25 Score=28.23 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=20.6
Q ss_pred chHHHHHHHhhcceEEEEEecCccCchhhHHHHHHH
Q 038521 57 ISESLLGTIEASTISIIIFSEKYASSKWCLDELLKI 92 (324)
Q Consensus 57 ~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i 92 (324)
+...|.++|..-...|+|++..|-.+ |+.||+..
T Consensus 60 ~~~~L~~~i~~~~g~ivvyN~sfE~~--rL~ela~~ 93 (130)
T PF11074_consen 60 LIEALIKAIGSIYGSIVVYNKSFEKT--RLKELAEL 93 (130)
T ss_pred HHHHHHHHhhhhcCeEEEechHHHHH--HHHHHHHH
Confidence 33444555544446677777766544 77887765
No 130
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=36.36 E-value=36 Score=28.18 Aligned_cols=57 Identities=12% Similarity=0.270 Sum_probs=35.1
Q ss_pred CCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCC
Q 038521 214 EKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELV 270 (324)
Q Consensus 214 kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~ 270 (324)
++=.+|+||+. +.+...+|+..+.....++++|++|.+.. ++...- --..+.+++|+
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 45578999998 45678888888776678899998888766 333321 12456666553
No 131
>PRK07413 hypothetical protein; Validated
Probab=36.08 E-value=69 Score=30.69 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCC-cEEEEecCCCH-----HHHHHHHhcCCCCCCCCeEEEEcCC---chhhhhcCCcceEEeccC
Q 038521 204 VNFQSKRLAREK-VLIVFDDVNHP-----RQIELLIGRLDRFASGSRVIITARD---KQVLTNCEIDHIYQMKEL 269 (324)
Q Consensus 204 ~~~l~~~L~~kr-~LlVLDDV~~~-----~~~~~l~~~~~~~~~GSrIIiTTR~---~~v~~~~~~~~~~~v~~L 269 (324)
.+..++.+.... =|||||.+... -..+.+...+...-++.-||+|-|+ +.+... ++.+-+|...
T Consensus 294 ~~~a~~~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~--ADlVTEm~~v 366 (382)
T PRK07413 294 WEIARAAIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDL--ASVHSEMVCH 366 (382)
T ss_pred HHHHHHHHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHh--Cchheecccc
Confidence 445555665544 49999998532 2233444444433467799999998 444443 3444555543
No 132
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=35.51 E-value=1.1e+02 Score=30.49 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=44.6
Q ss_pred CCCcEEEEecCCCHH---------H-----HHHHHhcCCCCC--CCCeEEEEcCCchhhhhc-----CCcceEEeccCCh
Q 038521 213 REKVLIVFDDVNHPR---------Q-----IELLIGRLDRFA--SGSRVIITARDKQVLTNC-----EIDHIYQMKELVH 271 (324)
Q Consensus 213 ~kr~LlVLDDV~~~~---------~-----~~~l~~~~~~~~--~GSrIIiTTR~~~v~~~~-----~~~~~~~v~~L~~ 271 (324)
+++++|+||+++... + +..|...++... .+..||.||.....+... ..+..++++..+.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 478999999997421 1 233433333222 344566677655443211 2356789999999
Q ss_pred hhHHHHHHHhh
Q 038521 272 ANALKLFTQCA 282 (324)
Q Consensus 272 ~es~~LF~~~a 282 (324)
++..++|..+.
T Consensus 368 e~r~~Il~~~l 378 (512)
T TIGR03689 368 EAAADIFSKYL 378 (512)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 133
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=35.29 E-value=84 Score=22.72 Aligned_cols=48 Identities=10% Similarity=0.227 Sum_probs=30.1
Q ss_pred CchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecC
Q 038521 28 DNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEK 78 (324)
Q Consensus 28 ~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 78 (324)
...+-.|...|+..|+++.+|.. +..+...+..|-..---+++++.++
T Consensus 17 ~~~a~~la~~Lr~~g~~v~~d~~---~~~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 17 QELAEKLYAELQAAGVDVLLDDR---NERPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEEECC---CCCcccchhHHHhcCCCEEEEECCc
Confidence 34678889999999999999862 2244444555533333345555544
No 134
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=35.25 E-value=2e+02 Score=21.80 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCceEEE-eCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHHHHHhcCCeEEeEEEe
Q 038521 31 TSHLFSALFQNNIETFI-DNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYR 109 (324)
Q Consensus 31 ~~~L~~~L~~~g~~~f~-d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~~~~~~~viPvfy~ 109 (324)
...|...|++.|+.+-+ |-.... +++.+.+...+.-++.+|-.+.. ...+...+.+..+.....+.=++.+
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~-----~~l~~~~~~~~pd~V~iS~~~~~---~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPP-----EELVEALRAERPDVVGISVSMTP---NLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-H-----HHHHHHHHHTTCSEEEEEESSST---HHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEECCCCCH-----HHHHHHHhcCCCcEEEEEccCcC---cHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 55788899999999854 433322 67788888888888888766444 4445555555544443344444444
Q ss_pred ecc
Q 038521 110 VDP 112 (324)
Q Consensus 110 v~p 112 (324)
..+
T Consensus 89 ~~~ 91 (121)
T PF02310_consen 89 PHA 91 (121)
T ss_dssp SSS
T ss_pred Cch
Confidence 443
No 135
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=35.14 E-value=1.3e+02 Score=28.28 Aligned_cols=69 Identities=10% Similarity=0.119 Sum_probs=48.8
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCC-chhhhhcC-CcceEEeccCChhhHHHHHHHh
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARD-KQVLTNCE-IDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~-~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~ 281 (324)
+++=.+|+|+.. +....++|...+..-.+++.+|++|.+ ..++...- --..+.+++++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 344478889998 456788888887766678877766665 44554432 1257889999999998888764
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.49 E-value=2.3e+02 Score=29.06 Aligned_cols=90 Identities=9% Similarity=0.150 Sum_probs=53.3
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDK-QVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
+++-++|+|++.. ...++.|...+........+|++|.+. .++..+ .....+++..++.++....+.+.+-... .
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 4455889999984 456788877776544456666555433 333322 1235678888988887776666553221 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. .+....+++.++|
T Consensus 200 is---~~al~~La~~s~G 214 (620)
T PRK14948 200 IE---PEALTLVAQRSQG 214 (620)
T ss_pred CC---HHHHHHHHHHcCC
Confidence 11 1335566667766
No 137
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=34.25 E-value=1.7e+02 Score=26.15 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=10.1
Q ss_pred CcEEEEecCCC
Q 038521 215 KVLIVFDDVNH 225 (324)
Q Consensus 215 r~LlVLDDV~~ 225 (324)
++||||||+-+
T Consensus 99 ~~LiIlDD~~~ 109 (241)
T PF04665_consen 99 RFLIILDDLGD 109 (241)
T ss_pred CeEEEEeCCCC
Confidence 89999999976
No 138
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=33.63 E-value=1.3e+02 Score=27.94 Aligned_cols=69 Identities=12% Similarity=0.244 Sum_probs=46.8
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCChhhHHHHHHHh
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~~~es~~LF~~~ 281 (324)
+.+=.+|+|++.. ....++|...+..-.+++.+|++|.+.. ++.... -...+++++++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3445688999874 4557777777776567888887776543 333332 2357899999999887777643
No 139
>PRK08350 hypothetical protein; Provisional
Probab=33.33 E-value=39 Score=31.72 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=28.7
Q ss_pred CCCccEEecCccccCCCchHHHHHHHHhcCCce
Q 038521 12 KKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIE 44 (324)
Q Consensus 12 ~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~ 44 (324)
...|-+.+|||+.+|-++|+.||.-+|.---|+
T Consensus 279 ~~g~~~vvSHRSGETeD~~IAdLaVa~~agqIK 311 (341)
T PRK08350 279 SERITPILAEAKYESADEALPHLAVGLRCPAML 311 (341)
T ss_pred HcCCeEEeecCCCCCcchhHHHHHHHhCCCccc
Confidence 346889999999999999999999999766665
No 140
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=32.69 E-value=2.8e+02 Score=25.94 Aligned_cols=70 Identities=9% Similarity=0.101 Sum_probs=49.4
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhcC-CcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDK-QVLTNCE-IDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~~-~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++=.+|+|++.. .....+|...+..-.+++.+|++|.+. .++...- --..+.+.+++.++..+.+....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh
Confidence 4555778999984 456778877776656778887777665 4544432 23578999999999988877653
No 141
>PRK07413 hypothetical protein; Validated
Probab=32.62 E-value=85 Score=30.11 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCCc-EEEEecCCCHH-----HHHHHHhcCCCCCCCCeEEEEcCCch
Q 038521 204 VNFQSKRLAREKV-LIVFDDVNHPR-----QIELLIGRLDRFASGSRVIITARDKQ 253 (324)
Q Consensus 204 ~~~l~~~L~~kr~-LlVLDDV~~~~-----~~~~l~~~~~~~~~GSrIIiTTR~~~ 253 (324)
.+..++.+....| |||||.+...- ..+.+...+...-++.-||+|-|+..
T Consensus 114 ~~~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap 169 (382)
T PRK07413 114 WDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAP 169 (382)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 3444555555444 99999986322 22334444443346779999999864
No 142
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=32.49 E-value=29 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.035 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHccccccCCchHHHHHhhhh
Q 038521 291 GYTALAHKAFSTRTQVIQTSPWPKILRLCYY 321 (324)
Q Consensus 291 ~~~~l~~~iv~~c~Gll~~~~~~~il~~cy~ 321 (324)
.-+++.+.|++.++-=+..+-+|-|||..||
T Consensus 29 ~~~eVe~~I~klakkG~tpSqIG~iLRD~~G 59 (60)
T PF08069_consen 29 SPEEVEELIVKLAKKGLTPSQIGVILRDQYG 59 (60)
T ss_dssp -HHHHHHHHHHHCCTTHCHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHcCCCHHHhhhhhhhccC
Confidence 3467788899998865666669999999997
No 143
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=31.70 E-value=44 Score=28.28 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=19.7
Q ss_pred hcCCCcEEEEecCCCH-HHHHHHHhcCCCCCCC
Q 038521 211 LAREKVLIVFDDVNHP-RQIELLIGRLDRFASG 242 (324)
Q Consensus 211 L~~kr~LlVLDDV~~~-~~~~~l~~~~~~~~~G 242 (324)
+++|++||| |||-+. ..+......+...|+.
T Consensus 95 v~gk~VLIV-DDIidTG~Tl~~~~~~Lk~~Ga~ 126 (181)
T PRK09162 95 LKGRTVLVV-DDILDEGHTLAAIRDRCLEMGAA 126 (181)
T ss_pred CCCCEEEEE-ccccCcHHHHHHHHHHHHhCCCC
Confidence 467777665 998755 5566666666554544
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=31.49 E-value=2.8e+02 Score=28.03 Aligned_cols=91 Identities=7% Similarity=0.060 Sum_probs=52.2
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++++|++.. ...+..|...+........+|++| ....+.... .-...++..+++.++....+...+-.....
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~ 197 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE 197 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4556889999984 456778877665444455555544 443343322 123467888999888887777655322211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....+++.++|
T Consensus 198 i~--~~al~~ia~~s~G 212 (559)
T PRK05563 198 YE--DEALRLIARAAEG 212 (559)
T ss_pred CC--HHHHHHHHHHcCC
Confidence 11 2334455555655
No 145
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=31.29 E-value=67 Score=27.95 Aligned_cols=36 Identities=28% Similarity=0.674 Sum_probs=22.2
Q ss_pred CcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch
Q 038521 215 KVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ 253 (324)
Q Consensus 215 r~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~ 253 (324)
..+|++|... +..+++.+... .|.|||||++--..+
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQ 157 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE----
T ss_pred ceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCcee
Confidence 5799999996 45678877555 478999999875444
No 146
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=31.03 E-value=1.7e+02 Score=26.07 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=44.7
Q ss_pred CchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHHHHHhcC
Q 038521 28 DNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYG 100 (324)
Q Consensus 28 ~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~~~~~ 100 (324)
...+..|.+....+| .-|+|=++.-++....++.+.-.+-. +|.|-+.+.+.+.++|+..++......+
T Consensus 78 ~~~i~ll~~la~~~~-~d~iDiEl~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~ 146 (231)
T COG0710 78 EEYIELLKKLAELNG-PDYIDIELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLG 146 (231)
T ss_pred HHHHHHHHHHHhhcC-CCEEEEEccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhC
Confidence 446777777776666 45666455444333233333333333 8889999999999999999888775544
No 147
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=30.83 E-value=1.3e+02 Score=24.83 Aligned_cols=60 Identities=12% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK 267 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~ 267 (324)
.|.+.+-.+.=+++||.-. |...-+.+...+.....|..||++|.+...+.. .++++.+.
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 4556666778889999985 333333332222211236788888888877653 45665553
No 148
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=30.06 E-value=1.3e+02 Score=25.79 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=34.4
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK 267 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~ 267 (324)
.+.+.|-.+.=+++||+-. +...-+.+...+.....+..||++|.+...+.. .++++.+.
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l~ 211 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID--SDRILVLD 211 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEEE
Confidence 4455666777899999876 333333333332222234668888877766554 35555554
No 149
>PRK10536 hypothetical protein; Provisional
Probab=29.60 E-value=56 Score=29.58 Aligned_cols=41 Identities=15% Similarity=0.398 Sum_probs=28.5
Q ss_pred HhcCCC---cEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch
Q 038521 210 RLAREK---VLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ 253 (324)
Q Consensus 210 ~L~~kr---~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~ 253 (324)
++++.. -+||+|...+ ..+.+.+... .+.||++|+|-=..+
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDITQ 214 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChhh
Confidence 445543 5999999974 4666666544 478999999875444
No 150
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=29.46 E-value=51 Score=29.71 Aligned_cols=30 Identities=37% Similarity=0.567 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHH----HhcCCeEEeEEEeeccc
Q 038521 84 WCLDELLKILECK----RNYGQIVIPVFYRVDPS 113 (324)
Q Consensus 84 wcl~El~~i~~~~----~~~~~~viPvfy~v~ps 113 (324)
=|.+||.++..-. ...+..++|+|..+||.
T Consensus 154 ICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 154 ICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred cChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 5889997755443 23445677999999995
No 151
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=29.18 E-value=77 Score=24.06 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=32.0
Q ss_pred ccCCCchHHHHHHHHhcCCceEEEeC-CCCCc----------ccchHHHHHHHhhcceEEEEEe
Q 038521 24 EDTRDNFTSHLFSALFQNNIETFIDN-DLKRG----------DEISESLLGTIEASTISIIIFS 76 (324)
Q Consensus 24 ~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g----------~~~~~~~~~~i~~s~~~i~v~S 76 (324)
.|+|++=+-.|.+.|...|+.+.+.| -.... -...+.+.++++.+...|+.-.
T Consensus 12 ~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~ 75 (106)
T PF03720_consen 12 DDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD 75 (106)
T ss_dssp S--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS-
T ss_pred cccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec
Confidence 47899999999999999999999887 33221 1122345677777776655433
No 152
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=29.13 E-value=56 Score=30.86 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCc
Q 038521 33 HLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASS 82 (324)
Q Consensus 33 ~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s 82 (324)
-++..|..+|+.++.++ ++. ++.+.++-.+....-+..|..|+|||...
T Consensus 299 p~~~~l~~~~ipVlf~~d~L~-~~~v~ea~rql~~~dk~~iaFf~pny~~~ 348 (360)
T PF07429_consen 299 PFWQDLKEQGIPVLFYGDELD-EALVREAQRQLANVDKQQIAFFAPNYLQG 348 (360)
T ss_pred hHHHHHHhCCCeEEeccccCC-HHHHHHHHHHHhhCcccceeeeCCchHHH
Confidence 35677888999998765 443 22332222222333455688999999873
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=29.07 E-value=1.2e+02 Score=29.31 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=43.2
Q ss_pred cEEEEecCCCH---HH-HHHHHhcCCC-CCCCCeEEEEcCCch---------hhhhcCCcceEEeccCChhhHHHHHHHh
Q 038521 216 VLIVFDDVNHP---RQ-IELLIGRLDR-FASGSRVIITARDKQ---------VLTNCEIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 216 ~LlVLDDV~~~---~~-~~~l~~~~~~-~~~GSrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
=|+++||++-. +. -+.+...++. ...|-.||+|++... +...++..-++++.+++.+....++..+
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 38899999632 11 2223333321 134558999985332 2233344568999999999999999987
Q ss_pred hcC
Q 038521 282 AFR 284 (324)
Q Consensus 282 af~ 284 (324)
+-.
T Consensus 257 a~~ 259 (408)
T COG0593 257 AED 259 (408)
T ss_pred HHh
Confidence 643
No 154
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=29.04 E-value=56 Score=26.96 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=24.1
Q ss_pred ccEEecCccccCCCchHHHHHHHHhcCCceEEEeC
Q 038521 15 HDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN 49 (324)
Q Consensus 15 ~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~ 49 (324)
--+.|. .|+.+.|...|.++|+.+||-+--++
T Consensus 53 Tt~~l~---q~~~D~Fg~aL~~aLR~~GYaV~e~~ 84 (151)
T PRK13883 53 TRFELQ---QPTPDAFGQALVKALRDKGYALLEYN 84 (151)
T ss_pred eEEEEe---cCCCcHHHHHHHHHHHHcCeEEEecC
Confidence 345553 45667899999999999999887655
No 155
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=28.77 E-value=50 Score=28.10 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=25.7
Q ss_pred cEEEEecCC---CHHHHHHHHhcCCCCC-CCCeEEEEcCCchhh
Q 038521 216 VLIVFDDVN---HPRQIELLIGRLDRFA-SGSRVIITARDKQVL 255 (324)
Q Consensus 216 ~LlVLDDV~---~~~~~~~l~~~~~~~~-~GSrIIiTTR~~~v~ 255 (324)
.++++|... ++.....+...+.... .+..||+||-+..++
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 889999997 4444444444443223 489999999887664
No 156
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=28.60 E-value=45 Score=27.28 Aligned_cols=65 Identities=20% Similarity=0.157 Sum_probs=45.9
Q ss_pred EEecCcccc-----CCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccC
Q 038521 17 VFVSFRGED-----TRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYAS 81 (324)
Q Consensus 17 vFis~~g~D-----~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~ 81 (324)
..+||||.- ..-..-.|+-+-|+..++.+|.-. .-+.=+.|......+.+.|+-..+.||+.|-.
T Consensus 97 ml~ShRG~~~E~i~AQVpmGr~~~kiLe~~~lpt~t~~~p~Ea~~li~~~~~~a~~~s~pv~vlls~~~We 167 (172)
T COG4032 97 MLASHRGVLKEGIEAQVPMGRALPKILEGLELPTYTIIGPEEALPLIENAILDAFENSRPVAVLLSPKYWE 167 (172)
T ss_pred hhhhccchhhcCCccccccchhhHHHHhhcCCcccccCCHHHHHHHHHHHHHHHHHcCCceEEEechHHhh
Confidence 367899864 222334578888888899888643 22223456677788899999999999998843
No 157
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.21 E-value=1.6e+02 Score=26.41 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCcEEEEecCCC---HHHHHHHHhcCCC-CCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 204 VNFQSKRLAREKVLIVFDDVNH---PRQIELLIGRLDR-FASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 204 ~~~l~~~L~~kr~LlVLDDV~~---~~~~~~l~~~~~~-~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
...|.+.+--+.=|.|||..++ .+.++.+....+. ..+|+-+||.|-.+.++.....+.+|-+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 3455566667888999999884 4444444443321 2468888888999999998877766544
No 158
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.95 E-value=2.2e+02 Score=28.86 Aligned_cols=69 Identities=9% Similarity=0.160 Sum_probs=42.2
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhcC-CcceEEeccCChhhHHHHHHHh
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITA-RDKQVLTNCE-IDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~~-~~~~~~v~~L~~~es~~LF~~~ 281 (324)
+++-++|+|++.. ....+.|...+....+.+.+|++| ....+..... ....++.++++.++....+...
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i 190 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYI 190 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHH
Confidence 3455788999974 455777777666544566666555 4444443321 1246778888887766655543
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=27.88 E-value=2e+02 Score=21.75 Aligned_cols=11 Identities=9% Similarity=0.576 Sum_probs=9.6
Q ss_pred CCcEEEEecCC
Q 038521 214 EKVLIVFDDVN 224 (324)
Q Consensus 214 kr~LlVLDDV~ 224 (324)
++.+|+|||++
T Consensus 58 ~~~vl~iDe~d 68 (132)
T PF00004_consen 58 KPCVLFIDEID 68 (132)
T ss_dssp TSEEEEEETGG
T ss_pred cceeeeeccch
Confidence 37999999996
No 160
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.29 E-value=1.7e+02 Score=25.29 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=36.5
Q ss_pred HHHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 205 NFQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 205 ~~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
-.|.+.|-.+.=+++||.-. +....+.+...+.....|..||++|.+...+.. .++++.+
T Consensus 146 l~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 146 VAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 34556677888999999975 333333333333222226678888888777654 4556555
No 161
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.98 E-value=1.8e+02 Score=23.84 Aligned_cols=58 Identities=22% Similarity=0.463 Sum_probs=34.1
Q ss_pred HHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 207 QSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 207 l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
+.+.|-.+.=+++||.-. |....+.+...+.....+..||++|.+...+.. +++++.+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 455666777899999875 333333332222222235678888888777654 4555554
No 162
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=26.61 E-value=2.5e+02 Score=22.89 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHHHHHhcCCeEEeEEEe-
Q 038521 31 TSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYR- 109 (324)
Q Consensus 31 ~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~~~~~~~viPvfy~- 109 (324)
+..|..+|+..|+...+- .|+ ..+.+.+-+++..+..|++...|.... ...-..+.+...+.+-.+.-+--.
T Consensus 55 L~~L~~~L~~~g~~L~v~----~g~-~~~~l~~l~~~~~~~~V~~~~~~~~~~--~~rd~~v~~~l~~~~i~~~~~~~~~ 127 (165)
T PF00875_consen 55 LADLQESLRKLGIPLLVL----RGD-PEEVLPELAKEYGATAVYFNEEYTPYE--RRRDERVRKALKKHGIKVHTFDDHT 127 (165)
T ss_dssp HHHHHHHHHHTTS-EEEE----ESS-HHHHHHHHHHHHTESEEEEE---SHHH--HHHHHHHHHHHHHTTSEEEEE--SS
T ss_pred HHHHHHHHHhcCcceEEE----ecc-hHHHHHHHHHhcCcCeeEeccccCHHH--HHHHHHHHHHHHhcceEEEEECCcE
Confidence 346778888899987753 454 334555566777788888888886632 222222333333333333222222
Q ss_pred -ecccccccccccchhhhhHh
Q 038521 110 -VDPSRVRKQIGSFGDSFFIL 129 (324)
Q Consensus 110 -v~psdvr~q~g~~~~~~~~~ 129 (324)
++|.++....|.....|...
T Consensus 128 L~~~~~i~~~~~~~~~vFtpf 148 (165)
T PF00875_consen 128 LVPPDDIPKKDGEPYKVFTPF 148 (165)
T ss_dssp SS-HHHCHSTTSSSHSSHHHH
T ss_pred EEeccccccCCCCCcccHHHH
Confidence 66667777767666665443
No 163
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=26.16 E-value=1.1e+02 Score=26.19 Aligned_cols=60 Identities=17% Similarity=0.374 Sum_probs=37.2
Q ss_pred HHHHhcCCCcEEEEecCC---CHHHHH-HHHhcCCCCC-C-CCeEEEEcCCchhhhhcCCcceEEecc
Q 038521 207 QSKRLAREKVLIVFDDVN---HPRQIE-LLIGRLDRFA-S-GSRVIITARDKQVLTNCEIDHIYQMKE 268 (324)
Q Consensus 207 l~~~L~~kr~LlVLDDV~---~~~~~~-~l~~~~~~~~-~-GSrIIiTTR~~~v~~~~~~~~~~~v~~ 268 (324)
+.+.+..+.-+++||+.- +....+ .+...+.... . |.-||++|.+...... ++.++.+..
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~~ 197 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVEK 197 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEee
Confidence 455667788999999985 333333 3433332222 2 6678888888877654 456666643
No 164
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=25.59 E-value=3.7e+02 Score=25.03 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=47.7
Q ss_pred CCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhcC-CcceEEeccCChhhHHHHHHHh
Q 038521 214 EKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDK-QVLTNCE-IDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 214 kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~~-~~~~~~v~~L~~~es~~LF~~~ 281 (324)
.+=.+|+|++.. ....++|...+..-.+++.+|++|.+. .++...- --..+.+++++.++..+.+...
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc
Confidence 344778899974 466788887776656778777776654 4554442 2357899999999998887653
No 165
>PRK06921 hypothetical protein; Provisional
Probab=25.30 E-value=49 Score=29.89 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=19.5
Q ss_pred CCcEEEEecCCC-------HHHHH--HHHhcCCC-CCCCCeEEEEcC
Q 038521 214 EKVLIVFDDVNH-------PRQIE--LLIGRLDR-FASGSRVIITAR 250 (324)
Q Consensus 214 kr~LlVLDDV~~-------~~~~~--~l~~~~~~-~~~GSrIIiTTR 250 (324)
+-=||||||+.. ..+|. .|...++. ...+..+||||.
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 346999999921 22332 23333221 123456788885
No 166
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=25.07 E-value=1.9e+02 Score=25.06 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=35.1
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK 267 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~ 267 (324)
.|...|..+.=+++||+-. +...-+.+...+.....|..||++|.+...+.. +++++.+.
T Consensus 149 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~--~d~v~~l~ 211 (238)
T cd03249 149 AIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRN--ADLIAVLQ 211 (238)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEEE
Confidence 3455566677799999975 333333333332211256678888887776653 45555553
No 167
>PRK08181 transposase; Validated
Probab=24.71 E-value=45 Score=30.27 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=19.2
Q ss_pred CcEEEEecCCCH----HHHHHHHhcCCC-CCCCCeEEEEcCCc
Q 038521 215 KVLIVFDDVNHP----RQIELLIGRLDR-FASGSRVIITARDK 252 (324)
Q Consensus 215 r~LlVLDDV~~~----~~~~~l~~~~~~-~~~GSrIIiTTR~~ 252 (324)
-=||||||+... ...+.|...+.. ...+ .+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 349999999521 211223332221 1223 588888653
No 168
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=24.71 E-value=1.2e+02 Score=30.56 Aligned_cols=61 Identities=15% Similarity=0.308 Sum_probs=39.2
Q ss_pred CCccEEecCcc--ccCCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHH-HhhcceEEEEEecC
Q 038521 13 KMHDVFVSFRG--EDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGT-IEASTISIIIFSEK 78 (324)
Q Consensus 13 ~~~dvFis~~g--~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~-i~~s~~~i~v~S~~ 78 (324)
..|||+|---+ .+.....+..|++.|+..|+++.+|+ +-..| -.+.+| ..+.... +++.++
T Consensus 467 aP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g----~k~~~ad~~GiP~~-iiiG~~ 531 (565)
T PRK09194 467 APFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPG----VKFADADLIGIPHR-IVVGDR 531 (565)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHH----HHHHHHHhcCCCEE-EEEcCc
Confidence 45889887554 22235688899999999999999998 43444 444444 3344444 444544
No 169
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=24.57 E-value=94 Score=27.52 Aligned_cols=44 Identities=16% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHHHhcC--CCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEE
Q 038521 205 NFQSKRLAR--EKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIIT 248 (324)
Q Consensus 205 ~~l~~~L~~--kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiT 248 (324)
..|++.|.. ....||||+|.++..+.++......+|-..-+++.
T Consensus 7 ~ri~~~l~~r~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~ 52 (229)
T PRK11081 7 ARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVW 52 (229)
T ss_pred HhHHHHHhcCCCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEec
Confidence 446666654 45789999999999999998887777665444443
No 170
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=24.54 E-value=2e+02 Score=24.40 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=35.7
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK 267 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~ 267 (324)
.+.+.|-.+.=+++||+-. +....+.+...+.....|..||++|.+...+.. .+.++.+.
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~--~d~v~~l~ 197 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDKILVMD 197 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh--CCEEEEEE
Confidence 4455566677889999975 344333333333222346778888887776654 35666554
No 171
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.94 E-value=2e+02 Score=24.86 Aligned_cols=59 Identities=15% Similarity=0.331 Sum_probs=34.5
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
.|.+.|-.+.=+++||+-- |...-+.+...+.....|..||++|.+...+.. +++++.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 4455566677789999875 333333333333222236678888888777654 4555555
No 172
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=23.87 E-value=2.1e+02 Score=21.65 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=19.8
Q ss_pred EEecCccccCCCchHHHHHHHHhcCCceEEE
Q 038521 17 VFVSFRGEDTRDNFTSHLFSALFQNNIETFI 47 (324)
Q Consensus 17 vFis~~g~D~~~~f~~~L~~~L~~~g~~~f~ 47 (324)
||+|.+..| +. -...+.+.|...|+++|-
T Consensus 3 vl~s~~~~~-k~-~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 3 VFISVADRD-KP-EAVEIAKRLAELGFKLVA 31 (110)
T ss_pred EEEEEEcCc-Hh-HHHHHHHHHHHCCCEEEE
Confidence 788888776 33 344666777778888764
No 173
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=23.65 E-value=5.3e+02 Score=23.02 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=43.3
Q ss_pred cCCCcEEEEecCCC---HHHHHHHHhcCCCCCCCCeEEEEcCCch-------hhhhcCCcceEEeccCChhhHHHHHHHh
Q 038521 212 AREKVLIVFDDVNH---PRQIELLIGRLDRFASGSRVIITARDKQ-------VLTNCEIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 212 ~~kr~LlVLDDV~~---~~~~~~l~~~~~~~~~GSrIIiTTR~~~-------v~~~~~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
-+.+-++|+++... ...++.|...++...++..+|+++-... .+.......+++..+++..+-.......
T Consensus 44 f~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~ 123 (302)
T TIGR01128 44 FSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQAR 123 (302)
T ss_pred ccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHH
Confidence 35667788999864 3567777776665556677777764211 2222112346677778777766666555
Q ss_pred h
Q 038521 282 A 282 (324)
Q Consensus 282 a 282 (324)
+
T Consensus 124 ~ 124 (302)
T TIGR01128 124 L 124 (302)
T ss_pred H
Confidence 4
No 174
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=23.61 E-value=3.6e+02 Score=23.54 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHHHHHhcCCeEEeE
Q 038521 31 TSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPV 106 (324)
Q Consensus 31 ~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~~~~~~~viPv 106 (324)
...|.....+.|. -++|-++..++....++.+.+..... -+|.|-+.+..+|-.+|+..+++.....+--++-+
T Consensus 81 ~~ll~~~~~~~~~-d~vDiEl~~~~~~~~~l~~~~~~~~~-kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi 154 (228)
T TIGR01093 81 LEELKRAADSPGP-DFVDIELFLPDDAVKELINIAKKGGT-KIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKI 154 (228)
T ss_pred HHHHHHHHHhCCC-CEEEEEccCCHHHHHHHHHHHHHCCC-EEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 3333333334443 44554565555555556555554444 46668888888899999988888775554334433
No 175
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=23.38 E-value=1.4e+02 Score=24.35 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=33.0
Q ss_pred CCcEEEEecCC---CHHHHHHHHhcCCC-CCCCCeEEEEcCCchhhhhcCCcceEEecc
Q 038521 214 EKVLIVFDDVN---HPRQIELLIGRLDR-FASGSRVIITARDKQVLTNCEIDHIYQMKE 268 (324)
Q Consensus 214 kr~LlVLDDV~---~~~~~~~l~~~~~~-~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~ 268 (324)
++-|++||+.. +...-..+...+.. ...|+.+|++|-+..++.. .+..+.+..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~--~d~~~~l~~ 155 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL--ADKLIHIKK 155 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh--hhhEEEEEE
Confidence 67899999986 33332333222211 1127899999999888765 356666654
No 176
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=23.11 E-value=2.8e+02 Score=25.60 Aligned_cols=69 Identities=12% Similarity=0.251 Sum_probs=46.8
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEEEc-CCchhhhhc-CCcceEEeccCChhhHHHHHHHh
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVIITA-RDKQVLTNC-EIDHIYQMKELVHANALKLFTQC 281 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIiTT-R~~~v~~~~-~~~~~~~v~~L~~~es~~LF~~~ 281 (324)
+.+=++|+||+... ...++|...+....+++.+|++| .-..++... ....+++..++++++..+.+...
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 46667888988744 44677777776656778877655 444455432 23468899999999888766653
No 177
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=23.09 E-value=1.6e+02 Score=29.59 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=41.9
Q ss_pred CCccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEec
Q 038521 13 KMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSE 77 (324)
Q Consensus 13 ~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~ 77 (324)
...||||-.-+++ ....+-.|...|+++|+++.+|. .+..+...+..|-..---.++|+.+
T Consensus 469 ~p~~v~vi~~~~~-~~~~a~~ia~~LR~~Gi~v~~d~---~~~sl~~q~k~A~~~g~~~~iiiG~ 529 (563)
T TIGR00418 469 APVQVVVIPVNER-HLDYAKKVAQKLKKAGIRVDVDD---RNERLGKKIREAQKQKIPYMLVVGD 529 (563)
T ss_pred CCceEEEEEccch-HHHHHHHHHHHHHHcCCEEEEEC---CCCCHHHHHHHHHhcCCCEEEEEch
Confidence 4578887766654 34578899999999999999986 2456666777774433334455554
No 178
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=23.01 E-value=1.3e+02 Score=29.51 Aligned_cols=73 Identities=15% Similarity=0.285 Sum_probs=45.5
Q ss_pred cCCCcEEEEecCCCHH----------------HHHHHHhcCCCC--CCCCeEEEEcCCchhhhhc-----CCcceEEecc
Q 038521 212 AREKVLIVFDDVNHPR----------------QIELLIGRLDRF--ASGSRVIITARDKQVLTNC-----EIDHIYQMKE 268 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~~----------------~~~~l~~~~~~~--~~GSrIIiTTR~~~v~~~~-----~~~~~~~v~~ 268 (324)
.+.+.+|+||+++... .+-.+...+..+ ..+-+||.||.....+... ..+..++++.
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 4567899999975221 111222222221 2356788888765544332 2356789999
Q ss_pred CChhhHHHHHHHhhcC
Q 038521 269 LVHANALKLFTQCAFR 284 (324)
Q Consensus 269 L~~~es~~LF~~~af~ 284 (324)
.+.++-.++|..+.-+
T Consensus 354 Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999987643
No 179
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=22.90 E-value=2.1e+02 Score=24.85 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=34.9
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
.|.+.|-.+.=+++||+-. |....+.+...+.....|..||++|.+...+.. ++.++.+
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~--~d~v~~l 209 (237)
T cd03252 148 AIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN--ADRIIVM 209 (237)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 3445556677899999975 333333333322222236778999988887653 4555544
No 180
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=22.16 E-value=2.5e+02 Score=20.89 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=39.0
Q ss_pred CCchHHHHHHHHhcCCceEEEeCCC--CCcccchHHH---HHHHhhcceEEEEEecCccCchhhHHHHHHHHH
Q 038521 27 RDNFTSHLFSALFQNNIETFIDNDL--KRGDEISESL---LGTIEASTISIIIFSEKYASSKWCLDELLKILE 94 (324)
Q Consensus 27 ~~~f~~~L~~~L~~~g~~~f~d~~~--~~g~~~~~~~---~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~ 94 (324)
+..|.. ..+.|+.+|+.+.---.+ ..|.+-..-+ +..+.+|+. +++=+++-.|.=|..|......
T Consensus 15 ~~~f~~-~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~--i~~l~gWe~S~GA~~E~~~A~~ 84 (92)
T PF14359_consen 15 RPAFNA-AAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDA--IYMLPGWENSRGARLEHELAKK 84 (92)
T ss_pred HHHHHH-HHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCE--EEEcCCcccCcchHHHHHHHHH
Confidence 445554 678888999765422233 3333322222 444556663 3444999999999999766543
No 181
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.87 E-value=2e+02 Score=23.48 Aligned_cols=60 Identities=23% Similarity=0.385 Sum_probs=34.3
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCC-CCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRF-ASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~-~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
.+.+.+-.+.-+++||+-- |....+.+...+... ..|.-||++|.+...+... .+.++.+
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3455666778889999975 333333333333221 2467788888887654432 2445544
No 182
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=21.82 E-value=2.5e+02 Score=24.52 Aligned_cols=88 Identities=15% Similarity=0.094 Sum_probs=45.2
Q ss_pred hhhHHhHHHHhhhhhhhcCccccc---------cccccceeeeeccccccc----cCC----HHHHHHHHHHhhhcC-CC
Q 038521 134 PYKTRNWRSALTEAANLSGFDSRV---------IRHFQGSYFAHNVRSAEE----TGR----LDDLRKELLSKLLND-WN 195 (324)
Q Consensus 134 ~e~v~~w~~al~~v~~~~G~~~~~---------~~~F~~~~wv~~v~~vs~----~~~----~~~l~~~il~~l~~~-~~ 195 (324)
.++++-||+|-+ +--.+|.+.-. +..|...+|+++..-+-- +.. +.-++++...++... -.
T Consensus 33 ~~EL~lWREATT-ifmtsGhGGC~P~GLAlAA~rrG~~vev~~~~~~plfld~vr~~~kk~v~~~v~~~f~~~a~~~gv~ 111 (207)
T PF11814_consen 33 REELRLWREATT-IFMTSGHGGCGPFGLALAAARRGFKVEVWVSTDGPLFLDSVRSEEKKEVMELVHEDFREEAEQAGVP 111 (207)
T ss_pred HHHHHHHHHhce-ecccCCCCCcChHHHHHHHHHcCCceEEEECCCCCceeccCCCHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 366999999943 22223433221 678888888873322111 111 223334444444333 11
Q ss_pred CccchhccHHHHHHHhcCCCcEEEEecC
Q 038521 196 VRNFQNINVNFQSKRLAREKVLIVFDDV 223 (324)
Q Consensus 196 ~~~~~~~~~~~l~~~L~~kr~LlVLDDV 223 (324)
...-.- ....|++.|......|||=+-
T Consensus 112 ~~~~~~-~~~~l~~~l~~G~~~lvLIS~ 138 (207)
T PF11814_consen 112 VHYRPL-SLADLRAALAAGAIVLVLIST 138 (207)
T ss_pred eecCCC-CHHHHHHHHHCCCEEEEEEee
Confidence 111111 356788888877776666433
No 183
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=21.80 E-value=4.9e+02 Score=26.85 Aligned_cols=72 Identities=14% Similarity=0.188 Sum_probs=43.9
Q ss_pred cCCCcEEEEecCCCHH----------------HHHHHHhcCCCCC--CCCeEEEEcCCchhhhhc-----CCcceEEecc
Q 038521 212 AREKVLIVFDDVNHPR----------------QIELLIGRLDRFA--SGSRVIITARDKQVLTNC-----EIDHIYQMKE 268 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~~----------------~~~~l~~~~~~~~--~GSrIIiTTR~~~v~~~~-----~~~~~~~v~~ 268 (324)
....++|+||+++... .+..+...+..+. .+--+|.||...+.+... ..+..++++.
T Consensus 242 ~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 4567899999996431 1233333333322 244556688776654322 1356778888
Q ss_pred CChhhHHHHHHHhhc
Q 038521 269 LVHANALKLFTQCAF 283 (324)
Q Consensus 269 L~~~es~~LF~~~af 283 (324)
.+.++-.+++..+.-
T Consensus 322 Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 322 PDVRGREQILKVHMR 336 (644)
T ss_pred CCHHHHHHHHHHHhh
Confidence 888888888887763
No 184
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.62 E-value=2.4e+02 Score=24.25 Aligned_cols=60 Identities=18% Similarity=0.362 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 205 NFQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 205 ~~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
-.|.+.|..+.=+++||.-. |...-+.+...+.....|..||++|.+...+.. .++++.+
T Consensus 148 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~i~~l 210 (229)
T cd03254 148 LAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN--ADKILVL 210 (229)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh--CCEEEEE
Confidence 34556677888899999875 333333333332222236678888888776653 4556555
No 185
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=21.49 E-value=7.5e+02 Score=26.47 Aligned_cols=45 Identities=24% Similarity=0.472 Sum_probs=27.2
Q ss_pred HHHHhcCCC-cEEEEecCC--CHHHHHHHHhcCCCC----C-------CCCeEEEEcCC
Q 038521 207 QSKRLAREK-VLIVFDDVN--HPRQIELLIGRLDRF----A-------SGSRVIITARD 251 (324)
Q Consensus 207 l~~~L~~kr-~LlVLDDV~--~~~~~~~l~~~~~~~----~-------~GSrIIiTTR~ 251 (324)
+...++.++ .+|+||++. ++..+..|...+... + ..+-||+||..
T Consensus 659 l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 659 LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 334444443 489999998 456677776655321 1 23457888764
No 186
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=21.36 E-value=86 Score=30.10 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccc
Q 038521 12 KKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEI 57 (324)
Q Consensus 12 ~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~ 57 (324)
...|.+-||||+.+|-++|+.||.-++..--|++= .+.+|+.+
T Consensus 353 ~~gy~~viSHRSGETeD~tIAdLAVa~~agqIKTG---s~sRseRi 395 (423)
T COG0148 353 DAGYTAVISHRSGETEDTTIADLAVATNAGQIKTG---SLSRSERV 395 (423)
T ss_pred HCCCeEEEecCCCCcccchHHHHHHHhCCCeeecC---CCcchhHH
Confidence 35788999999999999999999999976556553 23445544
No 187
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=21.03 E-value=68 Score=25.49 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=20.7
Q ss_pred CCchHHHHHHHHhcCCceEEEeC
Q 038521 27 RDNFTSHLFSALFQNNIETFIDN 49 (324)
Q Consensus 27 ~~~f~~~L~~~L~~~g~~~f~d~ 49 (324)
-...+..|++.|+..|+++..|+
T Consensus 42 ~~~~a~~l~~~L~~~gi~v~~D~ 64 (128)
T cd02426 42 LRDLCQGLKNELREAGLSVWPGY 64 (128)
T ss_pred HHHHHHHHHHHHHHcCCEEEecc
Confidence 35689999999999999999988
No 188
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.76 E-value=1.9e+02 Score=24.60 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=36.2
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCC-CCCCCeEEEEcCCchhhhhcCCcceEEecc
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDR-FASGSRVIITARDKQVLTNCEIDHIYQMKE 268 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~-~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~ 268 (324)
.+...|..+.-|++||.-- +....+.+...+.. ...|..||++|.+...+.. +.++.++.
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 3455666778899999874 33333333333321 1246778888888766554 56666654
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=20.66 E-value=2.8e+02 Score=25.93 Aligned_cols=86 Identities=9% Similarity=0.107 Sum_probs=55.4
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhcC-CcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ-VLTNCE-IDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~~-~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++=.+|+|+.. +...-.+|...+..-.+++.+|++|.+.+ ++...- --..+.+++++.++..+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---C
Confidence 455678899987 44567777777766567888777777644 554432 12467899999999888776531 1 1
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
+ .+-+..++..++|
T Consensus 183 ~---~~~a~~~~~la~G 196 (334)
T PRK07993 183 S---QDALLAALRLSAG 196 (334)
T ss_pred C---HHHHHHHHHHcCC
Confidence 1 1124456677777
No 190
>CHL00195 ycf46 Ycf46; Provisional
Probab=20.45 E-value=4.6e+02 Score=26.08 Aligned_cols=72 Identities=17% Similarity=0.204 Sum_probs=44.4
Q ss_pred CCCcEEEEecCCCHH--------------HHHHHHhcCCCCCCCCeEEEEcCCchhh-----hhcCCcceEEeccCChhh
Q 038521 213 REKVLIVFDDVNHPR--------------QIELLIGRLDRFASGSRVIITARDKQVL-----TNCEIDHIYQMKELVHAN 273 (324)
Q Consensus 213 ~kr~LlVLDDV~~~~--------------~~~~l~~~~~~~~~GSrIIiTTR~~~v~-----~~~~~~~~~~v~~L~~~e 273 (324)
..+++|.+|+++... .+..+...+.....+--||.||...+-+ .....+..++++..+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 578999999997321 1122222222223344566688665432 211246788999999999
Q ss_pred HHHHHHHhhcC
Q 038521 274 ALKLFTQCAFR 284 (324)
Q Consensus 274 s~~LF~~~af~ 284 (324)
-.++|..+.-+
T Consensus 397 R~~Il~~~l~~ 407 (489)
T CHL00195 397 REKIFKIHLQK 407 (489)
T ss_pred HHHHHHHHHhh
Confidence 99999888743
No 191
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.43 E-value=2.1e+02 Score=25.17 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 205 NFQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 205 ~~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
-.|.+.|-.++=+++||.-- |....+.+...+.....|..||++|.+...+..+ ++.++.+
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~-~d~i~~l 219 (251)
T PRK14249 156 LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARA-SDWTGFL 219 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh-CCEEEEE
Confidence 34556667788899999874 3333333322222112366788888776665543 2444444
No 192
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.30 E-value=1.4e+02 Score=25.89 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHhcCCCcEEEEecCC---CHHHHHHHHhcCCCCC--CCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 206 FQSKRLAREKVLIVFDDVN---HPRQIELLIGRLDRFA--SGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~---~~~~~~~l~~~~~~~~--~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
.|.+.+..+.=+++||... |....+.+...+.... .|..||++|.+...+..+ +++++.+
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~-~d~i~~l 204 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTM-SDRIAVM 204 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 4455666777889999975 3333334433332221 377888888777654432 2444444
Done!