Query 038521
Match_columns 324
No_of_seqs 308 out of 2385
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 20:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.1E-48 3.7E-53 334.0 12.6 148 9-156 30-180 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.4E-48 1.2E-52 325.8 8.7 145 11-155 5-151 (176)
3 3h16_A TIR protein; bacteria T 100.0 6.7E-33 2.3E-37 230.4 4.7 121 10-131 16-137 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 1.1E-27 3.7E-32 196.7 2.1 136 7-144 3-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 5.6E-24 1.9E-28 175.4 1.3 100 11-112 2-107 (149)
6 1t3g_A X-linked interleukin-1 99.9 1.1E-22 3.7E-27 169.4 6.6 100 13-112 1-114 (159)
7 2js7_A Myeloid differentiation 99.9 2.7E-23 9.1E-28 173.2 2.8 100 10-111 12-116 (160)
8 2j67_A TOLL like receptor 10; 99.9 5E-23 1.7E-27 174.3 3.3 100 9-110 30-134 (178)
9 2a5y_B CED-4; apoptosis; HET: 99.8 1.5E-20 5.1E-25 186.1 14.5 149 145-305 155-328 (549)
10 3sfz_A APAF-1, apoptotic pepti 99.6 8.4E-16 2.9E-20 164.1 9.4 146 145-305 150-319 (1249)
11 1vt4_I APAF-1 related killer D 99.6 8.3E-16 2.8E-20 158.5 8.7 127 144-282 152-311 (1221)
12 3j0a_A TOLL-like receptor 5; m 99.6 8.9E-16 3E-20 159.0 5.9 100 11-112 667-774 (844)
13 1z6t_A APAF-1, apoptotic prote 99.4 2.6E-13 8.9E-18 134.8 10.0 145 144-305 149-319 (591)
14 1w5s_A Origin recognition comp 97.7 6.9E-05 2.4E-09 70.2 7.1 133 164-304 89-250 (412)
15 2qby_B CDC6 homolog 3, cell di 97.2 0.0028 9.4E-08 58.6 12.3 132 164-304 84-232 (384)
16 1eiw_A Hypothetical protein MT 97.1 0.00061 2.1E-08 52.2 5.2 72 13-107 3-74 (111)
17 1njg_A DNA polymerase III subu 97.1 0.0014 4.7E-08 55.8 8.1 92 212-305 124-219 (250)
18 2qen_A Walker-type ATPase; unk 96.9 0.0025 8.4E-08 57.9 7.9 99 203-305 116-237 (350)
19 2qby_A CDC6 homolog 1, cell di 96.5 0.0033 1.1E-07 57.7 6.3 109 173-282 84-210 (386)
20 2v1u_A Cell division control p 96.4 0.025 8.4E-07 51.9 11.7 113 165-282 82-214 (387)
21 2fna_A Conserved hypothetical 96.0 0.0044 1.5E-07 56.2 3.8 87 214-305 137-241 (357)
22 1fnn_A CDC6P, cell division co 95.9 0.042 1.4E-06 50.4 10.5 127 173-303 81-227 (389)
23 2chg_A Replication factor C sm 95.7 0.021 7.3E-07 47.6 6.7 91 213-305 101-195 (226)
24 3hyn_A Putative signal transdu 95.3 0.057 2E-06 44.6 7.6 91 14-109 5-118 (189)
25 1sxj_B Activator 1 37 kDa subu 94.6 0.058 2E-06 48.1 6.7 91 212-305 105-200 (323)
26 1iqp_A RFCS; clamp loader, ext 92.3 0.22 7.5E-06 44.3 6.3 90 213-305 109-203 (327)
27 2chq_A Replication factor C sm 88.7 1.7 5.9E-05 38.1 8.8 91 213-305 101-195 (319)
28 1jr3_A DNA polymerase III subu 88.1 1.2 4.1E-05 40.3 7.5 90 213-305 118-212 (373)
29 3h4m_A Proteasome-activating n 85.9 2.5 8.7E-05 36.6 8.1 73 212-284 108-203 (285)
30 3bos_A Putative DNA replicatio 85.5 0.38 1.3E-05 40.5 2.4 90 213-305 103-208 (242)
31 1hqc_A RUVB; extended AAA-ATPa 85.2 4.4 0.00015 35.7 9.6 89 214-305 90-202 (324)
32 1sxj_E Activator 1 40 kDa subu 84.5 1.4 4.9E-05 39.6 6.0 90 212-305 132-228 (354)
33 2z4s_A Chromosomal replication 81.6 1.2 4.2E-05 42.0 4.4 76 208-283 188-277 (440)
34 1a5t_A Delta prime, HOLB; zinc 81.2 4.2 0.00014 36.5 7.7 86 213-305 107-196 (334)
35 2qz4_A Paraplegin; AAA+, SPG7, 79.2 9.4 0.00032 32.3 9.0 72 212-283 96-191 (262)
36 3u61_B DNA polymerase accessor 78.3 8.1 0.00028 34.1 8.6 59 214-275 105-171 (324)
37 1d2n_A N-ethylmaleimide-sensit 70.7 5.1 0.00018 34.5 5.1 70 211-280 121-210 (272)
38 3syl_A Protein CBBX; photosynt 69.7 6.4 0.00022 34.4 5.6 68 214-283 130-218 (309)
39 3eie_A Vacuolar protein sortin 69.6 25 0.00087 31.0 9.6 92 212-305 108-218 (322)
40 1sxj_A Activator 1 95 kDa subu 67.7 12 0.00039 35.9 7.3 88 213-305 147-243 (516)
41 1g5t_A COB(I)alamin adenosyltr 67.4 4.8 0.00016 33.6 3.9 68 203-270 108-181 (196)
42 1sxj_D Activator 1 41 kDa subu 67.1 16 0.00053 32.4 7.7 90 213-305 132-226 (353)
43 1l8q_A Chromosomal replication 64.7 7.4 0.00025 34.4 5.0 69 214-283 98-180 (324)
44 1xwi_A SKD1 protein; VPS4B, AA 63.1 60 0.002 28.6 10.7 93 212-306 103-214 (322)
45 2gno_A DNA polymerase III, gam 63.1 7.1 0.00024 34.7 4.5 69 213-282 81-152 (305)
46 2qp9_X Vacuolar protein sortin 62.7 52 0.0018 29.5 10.4 91 212-306 141-252 (355)
47 2zan_A Vacuolar protein sortin 61.9 59 0.002 30.2 10.9 92 212-305 225-335 (444)
48 3d8b_A Fidgetin-like protein 1 61.8 36 0.0012 30.6 9.1 93 212-306 174-286 (357)
49 3vfd_A Spastin; ATPase, microt 58.7 62 0.0021 29.3 10.2 93 212-306 205-317 (389)
50 3te6_A Regulatory protein SIR3 57.5 1E+02 0.0035 27.3 11.3 103 175-282 90-211 (318)
51 1jr3_D DNA polymerase III, del 57.1 31 0.001 30.6 7.7 71 212-282 74-155 (343)
52 3pvs_A Replication-associated 55.0 32 0.0011 32.2 7.7 70 212-283 104-179 (447)
53 1v95_A Nuclear receptor coacti 51.9 60 0.002 24.9 7.4 47 27-74 20-67 (130)
54 2f62_A Nucleoside 2-deoxyribos 51.5 66 0.0023 25.6 8.0 73 29-106 27-104 (161)
55 2yvq_A Carbamoyl-phosphate syn 51.1 23 0.0008 27.5 5.2 61 17-79 27-106 (143)
56 1sxj_C Activator 1 40 kDa subu 50.8 46 0.0016 29.4 7.8 89 214-305 110-203 (340)
57 2khz_A C-MYC-responsive protei 49.4 48 0.0016 26.4 6.9 86 13-106 10-109 (165)
58 4aby_A DNA repair protein RECN 49.3 39 0.0013 30.7 7.3 55 210-266 309-368 (415)
59 3uk6_A RUVB-like 2; hexameric 47.3 74 0.0025 28.1 8.7 83 215-304 190-292 (368)
60 2lci_A Protein OR36; structura 46.1 80 0.0027 22.7 6.9 102 203-306 14-127 (134)
61 4fyk_A Deoxyribonucleoside 5'- 39.8 89 0.003 24.6 6.9 84 16-107 4-101 (152)
62 4hlc_A DTMP kinase, thymidylat 35.8 1.8E+02 0.006 23.7 8.8 31 17-48 3-35 (205)
63 3pfi_A Holliday junction ATP-d 35.7 94 0.0032 27.1 7.3 71 213-283 105-198 (338)
64 3b9p_A CG5977-PA, isoform A; A 35.0 2E+02 0.0069 24.3 9.3 91 212-306 111-224 (297)
65 3hu3_A Transitional endoplasmi 32.3 1.4E+02 0.0046 28.2 8.2 78 206-283 289-386 (489)
66 3cf0_A Transitional endoplasmi 32.1 2.4E+02 0.0083 24.1 10.2 76 207-282 101-199 (301)
67 1jbk_A CLPB protein; beta barr 27.1 11 0.00038 29.5 -0.5 64 213-278 114-194 (195)
68 4h3d_A 3-dehydroquinate dehydr 27.0 92 0.0032 26.7 5.5 72 34-106 104-175 (258)
69 3auy_A DNA double-strand break 25.1 1.2E+02 0.004 27.3 6.1 57 209-267 299-359 (371)
70 3ec2_A DNA replication protein 24.5 30 0.001 27.3 1.7 38 214-251 100-142 (180)
71 3hjn_A DTMP kinase, thymidylat 24.4 56 0.0019 26.6 3.5 49 17-66 1-51 (197)
72 2r62_A Cell division protease 23.6 86 0.003 26.3 4.7 71 212-282 101-196 (268)
73 1ye8_A Protein THEP1, hypothet 23.0 1.9E+02 0.0065 22.8 6.4 63 211-275 96-169 (178)
74 3t15_A Ribulose bisphosphate c 22.4 2.5E+02 0.0085 24.0 7.5 41 241-283 154-199 (293)
75 1evl_A Threonyl-tRNA synthetas 22.1 1.6E+02 0.0055 26.7 6.5 57 14-74 298-355 (401)
76 2i4l_A Proline-tRNA ligase; al 21.3 1.1E+02 0.0036 28.7 5.1 58 14-74 365-425 (458)
77 1wu7_A Histidyl-tRNA synthetas 21.2 1.6E+02 0.0056 27.0 6.4 57 14-74 332-389 (434)
78 3pxi_A Negative regulator of g 21.1 97 0.0033 30.9 5.0 66 215-282 580-675 (758)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.1e-48 Score=334.00 Aligned_cols=148 Identities=39% Similarity=0.699 Sum_probs=138.3
Q ss_pred CCCCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHH
Q 038521 9 RNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLD 87 (324)
Q Consensus 9 ~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~ 87 (324)
+.+.++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++||++|+|||+||++|+||++
T Consensus 30 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~ 109 (204)
T 3ozi_A 30 SFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLM 109 (204)
T ss_dssp ----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHH
T ss_pred CCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHH
Confidence 45789999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCeEEeEEEeecccccccccccchhhhhHhhhcCh-hhHHhHHHHhhhhhhhcCcccc
Q 038521 88 ELLKILECKRN-YGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERFP-YKTRNWRSALTEAANLSGFDSR 156 (324)
Q Consensus 88 El~~i~~~~~~-~~~~viPvfy~v~psdvr~q~g~~~~~~~~~~~~~~-e~v~~w~~al~~v~~~~G~~~~ 156 (324)
||++|++|.+. .+++|+||||+|+|++||+|+|.||++|.+|+.++. +++++||.||+++++++|++..
T Consensus 110 EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~ 180 (204)
T 3ozi_A 110 ELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIG 180 (204)
T ss_dssp HHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEEC
T ss_pred HHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecC
Confidence 99999999864 578999999999999999999999999999998874 6799999999999999999865
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.4e-48 Score=325.78 Aligned_cols=145 Identities=43% Similarity=0.723 Sum_probs=124.5
Q ss_pred CCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHH
Q 038521 11 DKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDEL 89 (324)
Q Consensus 11 ~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El 89 (324)
.+++|||||||||+|+|++|++||+.+|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 468999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEeEEEeecccccccccccchhhhhHhhhcC-hhhHHhHHHHhhhhhhhcCccc
Q 038521 90 LKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKERF-PYKTRNWRSALTEAANLSGFDS 155 (324)
Q Consensus 90 ~~i~~~~~~~~~~viPvfy~v~psdvr~q~g~~~~~~~~~~~~~-~e~v~~w~~al~~v~~~~G~~~ 155 (324)
++|++|.+..+++|+||||+|+|++||+|+|.||++|.+|+.+. .+++++|+.||+++++++|++.
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~ 151 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCS 151 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEEC
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceec
Confidence 99999998889999999999999999999999999999999873 4789999999999999999874
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=6.7e-33 Score=230.38 Aligned_cols=121 Identities=21% Similarity=0.385 Sum_probs=112.6
Q ss_pred CCCCCccEEecCccccCCCchHHHHHHHHhcCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHH
Q 038521 10 NDKKMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDE 88 (324)
Q Consensus 10 ~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~E 88 (324)
++.++|||||||+|+| +..|+.||+.+|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|+||++|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4578999999999999 67899999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEeEEEeecccccccccccchhhhhHhhh
Q 038521 89 LLKILECKRNYGQIVIPVFYRVDPSRVRKQIGSFGDSFFILKE 131 (324)
Q Consensus 89 l~~i~~~~~~~~~~viPvfy~v~psdvr~q~g~~~~~~~~~~~ 131 (324)
|..++++....++.|+||||+++|++||+|+|.|+++|.....
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 9999998767778999999999999999999999999876543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.93 E-value=1.1e-27 Score=196.69 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=93.0
Q ss_pred CCCCCCCCccEEecCccccCCCchHHHHHHHHhc--CCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCch
Q 038521 7 PPRNDKKMHDVFVSFRGEDTRDNFTSHLFSALFQ--NNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSK 83 (324)
Q Consensus 7 ~~~~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~--~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~ 83 (324)
+|....+.|||||||+++|++ |+.+|+.+|++ .|+++|+|+ ++.+|+.+.++|.++|++||++|+|||+||++|+
T Consensus 3 ~~~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~ 80 (146)
T 3ub2_A 3 GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP 80 (146)
T ss_dssp -CCTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred CCCCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence 445567899999999999954 89999999998 599999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhcCCeEEeEEEeeccc----ccccccccchhhhhHhhhcChhhHHhHHHHh
Q 038521 84 WCLDELLKILECKRNYGQIVIPVFYRVDPS----RVRKQIGSFGDSFFILKERFPYKTRNWRSAL 144 (324)
Q Consensus 84 wcl~El~~i~~~~~~~~~~viPvfy~v~ps----dvr~q~g~~~~~~~~~~~~~~e~v~~w~~al 144 (324)
||+.|+..++.+.......||||||++++. .++.............-....+.|.+|++++
T Consensus 81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 999999999987633344788999998854 4455443222222111122236688888775
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.87 E-value=5.6e-24 Score=175.40 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=90.0
Q ss_pred CCCCccEEecCccccCCCchHHH-HHHHHhcC--CceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchhhH
Q 038521 11 DKKMHDVFVSFRGEDTRDNFTSH-LFSALFQN--NIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCL 86 (324)
Q Consensus 11 ~~~~~dvFis~~g~D~~~~f~~~-L~~~L~~~--g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl 86 (324)
.++.|||||||+|+|+ +|+.+ |..+|++. |+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|+||++|+||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999995 69997 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHhcCCeEEeEEEe-ecc
Q 038521 87 DELLKILEC-KRNYGQIVIPVFYR-VDP 112 (324)
Q Consensus 87 ~El~~i~~~-~~~~~~~viPvfy~-v~p 112 (324)
.|+..++++ .+..+..||||||+ +++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~ 107 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEK 107 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence 999988753 35566789999997 544
No 6
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=169.35 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=89.7
Q ss_pred CCccEEecCccccC---------CCchHHHHHH-HHh-cCCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCcc
Q 038521 13 KMHDVFVSFRGEDT---------RDNFTSHLFS-ALF-QNNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYA 80 (324)
Q Consensus 13 ~~~dvFis~~g~D~---------~~~f~~~L~~-~L~-~~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 80 (324)
+.|||||||+++|+ +++|+.+|.. .|+ +.|+++|+|+ ++.+|+.+.++|.++|++||.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679999776 699 7999999999 9999999999999999999999999999997
Q ss_pred -CchhhHHHHHHHHHHH-HhcCCeEEeEEEeecc
Q 038521 81 -SSKWCLDELLKILECK-RNYGQIVIPVFYRVDP 112 (324)
Q Consensus 81 -~s~wcl~El~~i~~~~-~~~~~~viPvfy~v~p 112 (324)
.|+||+.|+..++++. ...+..||||++...+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999876 6667899999987444
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.87 E-value=2.7e-23 Score=173.18 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=90.2
Q ss_pred CCCCCccEEecCccccCCCchHHHHHHHHhcC--CceEEEeC-CCCCcccchHHHHHHHh-hcceEEEEEecCccCchhh
Q 038521 10 NDKKMHDVFVSFRGEDTRDNFTSHLFSALFQN--NIETFIDN-DLKRGDEISESLLGTIE-ASTISIIIFSEKYASSKWC 85 (324)
Q Consensus 10 ~~~~~~dvFis~~g~D~~~~f~~~L~~~L~~~--g~~~f~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~wc 85 (324)
+.++.|||||||+++| .+|+.+|..+|++. |+++|+|+ ++.+|+.+.++|.++|+ +|+++|+|+|+||++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 3467999999999999 67999999999984 69999999 99999999999999999 7999999999999999999
Q ss_pred HHHHHHHHHHH-HhcCCeEEeEEEeec
Q 038521 86 LDELLKILECK-RNYGQIVIPVFYRVD 111 (324)
Q Consensus 86 l~El~~i~~~~-~~~~~~viPvfy~v~ 111 (324)
+.|+..++++. ...+..||||+|+.-
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 99999999874 344568999999854
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.86 E-value=5e-23 Score=174.26 Aligned_cols=100 Identities=20% Similarity=0.341 Sum_probs=86.2
Q ss_pred CCCCCCccEEecCccccCCCchHHH-HHHHHhc--CCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCchh
Q 038521 9 RNDKKMHDVFVSFRGEDTRDNFTSH-LFSALFQ--NNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSKW 84 (324)
Q Consensus 9 ~~~~~~~dvFis~~g~D~~~~f~~~-L~~~L~~--~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~w 84 (324)
...++.|||||||+|+|+ +|+.+ |..+|++ +|+++|+|+ ++.+|+.+.++|.++|++||++|+|+|+||++|+|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 345789999999999994 79985 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH-HhcCCeEEeEEEee
Q 038521 85 CLDELLKILECK-RNYGQIVIPVFYRV 110 (324)
Q Consensus 85 cl~El~~i~~~~-~~~~~~viPvfy~v 110 (324)
|+.|+..++++. +..+..||||||+.
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 999999988654 45567899999983
No 9
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.84 E-value=1.5e-20 Score=186.07 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=121.5
Q ss_pred hhhhhhcCccccc-------------cccccceeeeeccccccccC--CHHHHHHHHHHhhhcC-C--CCccc-----hh
Q 038521 145 TEAANLSGFDSRV-------------IRHFQGSYFAHNVRSAEETG--RLDDLRKELLSKLLND-W--NVRNF-----QN 201 (324)
Q Consensus 145 ~~v~~~~G~~~~~-------------~~~F~~~~wv~~v~~vs~~~--~~~~l~~~il~~l~~~-~--~~~~~-----~~ 201 (324)
..+.|++|.|+++ ..+|++++||+ +++.+ ++..+++.|+.++... . ...+. +.
T Consensus 155 v~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 4566788888765 46899999998 88764 8899999999999764 2 22222 23
Q ss_pred ccHHHHHHHhcCC-CcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcC-CcceEEeccCChhhHHHHHH
Q 038521 202 INVNFQSKRLARE-KVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCE-IDHIYQMKELVHANALKLFT 279 (324)
Q Consensus 202 ~~~~~l~~~L~~k-r~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~-~~~~~~v~~L~~~es~~LF~ 279 (324)
+...+++.|.++ |+||||||||+.+++ .+.. .+||+||||||++.++..++ ...+|+|++|+.+|||+||+
T Consensus 231 -l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~ 303 (549)
T 2a5y_B 231 -LKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLE 303 (549)
T ss_dssp -HHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHH
T ss_pred -HHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHH
Confidence 478899999996 999999999999876 3322 27999999999999999876 45789999999999999999
Q ss_pred HhhcCCCCCChhHHHHHHHHHHHccc
Q 038521 280 QCAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 280 ~~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
++||+... ++++.+++++|+++|+|
T Consensus 304 ~~a~~~~~-~~~~~~~~~~I~~~c~G 328 (549)
T 2a5y_B 304 AYGMPMPV-GEKEEDVLNKTIELSSG 328 (549)
T ss_dssp HTSCCCC---CHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-chhHHHHHHHHHHHhCC
Confidence 99997643 46889999999999999
No 10
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.61 E-value=8.4e-16 Score=164.11 Aligned_cols=146 Identities=17% Similarity=0.236 Sum_probs=110.4
Q ss_pred hhhhhhcCccccc------------cccc-cceeeeeccccccccCC--HHHHHHHHHHhhhcC-C----CCccchhccH
Q 038521 145 TEAANLSGFDSRV------------IRHF-QGSYFAHNVRSAEETGR--LDDLRKELLSKLLND-W----NVRNFQNINV 204 (324)
Q Consensus 145 ~~v~~~~G~~~~~------------~~~F-~~~~wv~~v~~vs~~~~--~~~l~~~il~~l~~~-~----~~~~~~~~~~ 204 (324)
..+.+++|.++++ ..+| +...|++ +++..+ ....++.++..+... . ...+.+. +.
T Consensus 150 v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 224 (1249)
T 3sfz_A 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS----IGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEE-AK 224 (1249)
T ss_dssp EEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE----CCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHH-HH
T ss_pred EEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE----ECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHH-HH
Confidence 3467888888887 2335 4556999 877433 444566677777554 2 1234455 67
Q ss_pred HHHHHHhcCC--CcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhh-cCCcceEEecc-CChhhHHHHHHH
Q 038521 205 NFQSKRLARE--KVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTN-CEIDHIYQMKE-LVHANALKLFTQ 280 (324)
Q Consensus 205 ~~l~~~L~~k--r~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~-~~~~~~~~v~~-L~~~es~~LF~~ 280 (324)
..++..|.++ |+||||||||+..+|+.+ ++|||||||||++.++.. ++....+++++ |+++||++||+.
T Consensus 225 ~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~ 297 (1249)
T 3sfz_A 225 DRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSL 297 (1249)
T ss_dssp HHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHH
Confidence 7788888777 999999999999888764 689999999999999854 45667899996 999999999999
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccc
Q 038521 281 CAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 281 ~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
.++.. .+++.+++++|+++|+|
T Consensus 298 ~~~~~---~~~~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 298 FVNMK---KEDLPAEAHSIIKECKG 319 (1249)
T ss_dssp HHTSC---STTCCTHHHHHHHHTTT
T ss_pred hhCCC---hhhCcHHHHHHHHHhCC
Confidence 98543 34556779999999999
No 11
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.60 E-value=8.3e-16 Score=158.52 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=97.7
Q ss_pred hhhhhhhcCccccc-----------cccccc-eeeeeccccccccCCHHHHHHHHHHhhhcC----C-CC-------ccc
Q 038521 144 LTEAANLSGFDSRV-----------IRHFQG-SYFAHNVRSAEETGRLDDLRKELLSKLLND----W-NV-------RNF 199 (324)
Q Consensus 144 l~~v~~~~G~~~~~-----------~~~F~~-~~wv~~v~~vs~~~~~~~l~~~il~~l~~~----~-~~-------~~~ 199 (324)
+..+.+++|.++++ +.+|+. ++|++ +++.++...++..|+..+... . .. .+.
T Consensus 152 VV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~l 227 (1221)
T 1vt4_I 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227 (1221)
T ss_dssp EEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCH
Confidence 45677888888886 467986 89999 998888888888877754221 1 11 122
Q ss_pred hhccHHHHHHHh---cCCCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec------cCC
Q 038521 200 QNINVNFQSKRL---AREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK------ELV 270 (324)
Q Consensus 200 ~~~~~~~l~~~L---~~kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~------~L~ 270 (324)
+. +...+++.| .+||+||||||||+.++|+.+. +|||||||||++.++..+.....|+|+ .|+
T Consensus 228 ee-L~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS 299 (1221)
T 1vt4_I 228 HS-IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299 (1221)
T ss_dssp HH-HHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCC
T ss_pred HH-HHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcC
Confidence 33 456677766 6799999999999999998862 799999999999998755434467888 999
Q ss_pred hhhHHHHHHHhh
Q 038521 271 HANALKLFTQCA 282 (324)
Q Consensus 271 ~~es~~LF~~~a 282 (324)
.+|||+||+++.
T Consensus 300 ~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 300 PDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999983
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.58 E-value=8.9e-16 Score=158.98 Aligned_cols=100 Identities=17% Similarity=0.280 Sum_probs=89.3
Q ss_pred CCCCccEEecCccccCCCchH-HHHHHHHhc-----CCceEEEeC-CCCCcccchHHHHHHHhhcceEEEEEecCccCch
Q 038521 11 DKKMHDVFVSFRGEDTRDNFT-SHLFSALFQ-----NNIETFIDN-DLKRGDEISESLLGTIEASTISIIIFSEKYASSK 83 (324)
Q Consensus 11 ~~~~~dvFis~~g~D~~~~f~-~~L~~~L~~-----~g~~~f~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~ 83 (324)
..+.|||||||+++|. .|| .+|...|+. .|+++|+++ |+.+|+.+.++|.++|++||.+|+|+|++|+.|+
T Consensus 667 ~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 5689999999999994 688 678999985 689999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH-HhcCCeEEeEEEeecc
Q 038521 84 WCLDELLKILECK-RNYGQIVIPVFYRVDP 112 (324)
Q Consensus 84 wcl~El~~i~~~~-~~~~~~viPvfy~v~p 112 (324)
||..|+..++.+. +..+..||||||+..|
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999998877654 5566789999998544
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=134.85 Aligned_cols=145 Identities=18% Similarity=0.235 Sum_probs=103.5
Q ss_pred hhhhhhhcCccccc------------cccc-cceeeeeccccccccCCHHHHHHHH---HHhhhcC-----CCCccchhc
Q 038521 144 LTEAANLSGFDSRV------------IRHF-QGSYFAHNVRSAEETGRLDDLRKEL---LSKLLND-----WNVRNFQNI 202 (324)
Q Consensus 144 l~~v~~~~G~~~~~------------~~~F-~~~~wv~~v~~vs~~~~~~~l~~~i---l~~l~~~-----~~~~~~~~~ 202 (324)
+..+.+++|.|+++ ..+| +.++|++ ++.. +...+...+ +..+... ....+.+.
T Consensus 149 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~----~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~- 222 (591)
T 1z6t_A 149 WVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS----VGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEE- 222 (591)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE----EESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHH-
T ss_pred eEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE----CCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHH-
Confidence 34567788888876 3467 4789999 7654 333333333 3344321 12234445
Q ss_pred cHHHHHHHhcC--CCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec---cCChhhHHHH
Q 038521 203 NVNFQSKRLAR--EKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK---ELVHANALKL 277 (324)
Q Consensus 203 ~~~~l~~~L~~--kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~---~L~~~es~~L 277 (324)
....++..+.+ +++||||||||+..+++.+ ++||+||||||++.++..++ ...|++. +|+.+|+++|
T Consensus 223 ~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L 294 (591)
T 1z6t_A 223 AKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEI 294 (591)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHH
T ss_pred HHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHH
Confidence 66778888876 7999999999998877643 67999999999999887654 4566664 8999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHccc
Q 038521 278 FTQCAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 278 F~~~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
|...++.. .+...+.+.+|+++|+|
T Consensus 295 ~~~~~~~~---~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 295 LSLFVNMK---KADLPEQAHSIIKECKG 319 (591)
T ss_dssp HHHHHTSC---GGGSCTHHHHHHHHHTT
T ss_pred HHHHhCCC---cccccHHHHHHHHHhCC
Confidence 99998752 23345678899999999
No 14
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.66 E-value=6.9e-05 Score=70.18 Aligned_cols=133 Identities=9% Similarity=0.076 Sum_probs=81.3
Q ss_pred eeeeeccccccccCCHHHHHHHHHHhhhcC-C-CCccchhccHHHHHHHhc--CCCcEEEEecCCCH--------HHHHH
Q 038521 164 SYFAHNVRSAEETGRLDDLRKELLSKLLND-W-NVRNFQNINVNFQSKRLA--REKVLIVFDDVNHP--------RQIEL 231 (324)
Q Consensus 164 ~~wv~~v~~vs~~~~~~~l~~~il~~l~~~-~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDDV~~~--------~~~~~ 231 (324)
.+|+. .....+...+...++.++... . ...+... ....+.+.|. +++++|||||++.. +.+..
T Consensus 89 ~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~ 163 (412)
T 1w5s_A 89 QAYVN----AFNAPNLYTILSLIVRQTGYPIQVRGAPALD-ILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYT 163 (412)
T ss_dssp EEEEE----GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHH-HHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHH
T ss_pred EEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHH
Confidence 35666 555667888999999888544 2 1222333 4556666664 67999999999764 33444
Q ss_pred HHhcCCCC---C--CCCeEEEEcCCchhhhhcC---------CcceEEeccCChhhHHHHHHHh---hcCCCCCChhHHH
Q 038521 232 LIGRLDRF---A--SGSRVIITARDKQVLTNCE---------IDHIYQMKELVHANALKLFTQC---AFRRDHLDAGYTA 294 (324)
Q Consensus 232 l~~~~~~~---~--~GSrIIiTTR~~~v~~~~~---------~~~~~~v~~L~~~es~~LF~~~---af~~~~~~~~~~~ 294 (324)
+...+... + ....+|+||+...+...+. ....+++++|+.++.+++|... +|...... .+
T Consensus 164 l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~ 240 (412)
T 1w5s_A 164 LLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWE---PR 240 (412)
T ss_dssp HHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HH
T ss_pred HHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hH
Confidence 43332211 2 3344888888665432111 1223899999999999999755 34322222 34
Q ss_pred HHHHHHHHcc
Q 038521 295 LAHKAFSTRT 304 (324)
Q Consensus 295 l~~~iv~~c~ 304 (324)
....+.+.|+
T Consensus 241 ~~~~i~~~~~ 250 (412)
T 1w5s_A 241 HLELISDVYG 250 (412)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5667778888
No 15
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.0028 Score=58.58 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=80.9
Q ss_pred eeeeeccccccccC-CHHHHHHHHHHhhhcC-C--CCccchhccHHHHHHHhcCCCcEEEEecCCCHHH---HHH-HHhc
Q 038521 164 SYFAHNVRSAEETG-RLDDLRKELLSKLLND-W--NVRNFQNINVNFQSKRLAREKVLIVFDDVNHPRQ---IEL-LIGR 235 (324)
Q Consensus 164 ~~wv~~v~~vs~~~-~~~~l~~~il~~l~~~-~--~~~~~~~~~~~~l~~~L~~kr~LlVLDDV~~~~~---~~~-l~~~ 235 (324)
.+|+. .+... +...+...++..+.+. . ...+... ....+.+.+..++.+|||||++.... .+. +...
T Consensus 84 ~~~i~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l 158 (384)
T 2qby_B 84 QAYVN----CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGE-YIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQL 158 (384)
T ss_dssp EEEEE----HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHH-HHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHH
T ss_pred EEEEE----CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHH-HHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHH
Confidence 34555 44555 7788888888888554 2 1222334 46667777877777999999976432 222 2222
Q ss_pred CCCCCCCCeEEEEcCCchhhhhcC------CcceEEeccCChhhHHHHHHHhh---cCCCCCChhHHHHHHHHHHHcc
Q 038521 236 LDRFASGSRVIITARDKQVLTNCE------IDHIYQMKELVHANALKLFTQCA---FRRDHLDAGYTALAHKAFSTRT 304 (324)
Q Consensus 236 ~~~~~~GSrIIiTTR~~~v~~~~~------~~~~~~v~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~ 304 (324)
+... .+.++|+||+.......+. ....+++++++.++..++|..++ |......++ ..+.++++|+
T Consensus 159 ~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~---~~~~i~~~~~ 232 (384)
T 2qby_B 159 LRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDE---ILSYIAAISA 232 (384)
T ss_dssp HTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSH---HHHHHHHHHH
T ss_pred hcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHH---HHHHHHHHHH
Confidence 2222 6789999998764321111 12389999999999999999874 333333322 3345555665
No 16
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.11 E-value=0.00061 Score=52.23 Aligned_cols=72 Identities=14% Similarity=0.026 Sum_probs=50.3
Q ss_pred CCccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHH
Q 038521 13 KMHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKI 92 (324)
Q Consensus 13 ~~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i 92 (324)
.+|.+||||...|..+.|. ..|.+.|+.. .| +.|+.|.+.|++.+++...|+||..|+...
T Consensus 3 ~~~~lFISh~~~d~~~~L~----~~l~~~~f~~-~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFL----ERLEQSGLEW-RP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHHHHHHH----HHHHHHCSCE-EE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhHHHHHH----HHHhCCCCee-ec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999998333333 3343445532 22 567899999999999999999999997654
Q ss_pred HHHHHhcCCeEEeEE
Q 038521 93 LECKRNYGQIVIPVF 107 (324)
Q Consensus 93 ~~~~~~~~~~viPvf 107 (324)
. +.+.+++-|.
T Consensus 64 ~----~~gkpIigV~ 74 (111)
T 1eiw_A 64 R----KSSKPIITVR 74 (111)
T ss_dssp T----TTTCCEEEEC
T ss_pred H----HcCCCEEEEE
Confidence 4 3445555543
No 17
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.10 E-value=0.0014 Score=55.76 Aligned_cols=92 Identities=10% Similarity=0.079 Sum_probs=64.2
Q ss_pred cCCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhh-hc-CCcceEEeccCChhhHHHHHHHhhcCCCC
Q 038521 212 AREKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQVLT-NC-EIDHIYQMKELVHANALKLFTQCAFRRDH 287 (324)
Q Consensus 212 ~~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~-~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~ 287 (324)
.+++.+|||||++ +...++.|...+.....+.++|+||+...-+. .. .....+++++++.+|..+++...+.....
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~ 203 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI 203 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 3567899999996 45677777776655566788999987654321 11 12357899999999999999988754332
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
..+ .+....++++|+|
T Consensus 204 ~~~--~~~~~~l~~~~~G 219 (250)
T 1njg_A 204 AHE--PRALQLLARAAEG 219 (250)
T ss_dssp CBC--HHHHHHHHHHHTT
T ss_pred CCC--HHHHHHHHHHcCC
Confidence 111 2446678888988
No 18
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.86 E-value=0.0025 Score=57.86 Aligned_cols=99 Identities=11% Similarity=0.124 Sum_probs=61.0
Q ss_pred cHHHHHHHhcC-CCcEEEEecCCCHH---------HHHHHHhcCCCCCCCCeEEEEcCCchhhhhc-----------C-C
Q 038521 203 NVNFQSKRLAR-EKVLIVFDDVNHPR---------QIELLIGRLDRFASGSRVIITARDKQVLTNC-----------E-I 260 (324)
Q Consensus 203 ~~~~l~~~L~~-kr~LlVLDDV~~~~---------~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~-----------~-~ 260 (324)
....+.+.+.. ++++|||||++... .+..|...... .++.++|+|++...++... + .
T Consensus 116 ~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~ 194 (350)
T 2qen_A 116 VFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRI 194 (350)
T ss_dssp HHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCC
T ss_pred HHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCc
Confidence 34445544442 48999999997633 23444332221 2578899998876542211 1 1
Q ss_pred cceEEeccCChhhHHHHHHHhhcCCC-CCChhHHHHHHHHHHHccc
Q 038521 261 DHIYQMKELVHANALKLFTQCAFRRD-HLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 261 ~~~~~v~~L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~G 305 (324)
...+++.+|+.+|+.+++....-... ... .+...++...|+|
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG 237 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDG 237 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTT
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCC
Confidence 24789999999999999876431111 122 2456788889998
No 19
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.52 E-value=0.0033 Score=57.73 Aligned_cols=109 Identities=13% Similarity=0.024 Sum_probs=65.2
Q ss_pred ccccCCHHHHHHHHHHhhhcC-C-CCccchhccHHHHHHHhc--CCCcEEEEecCCCH------HHHHHHHhcCCC-CCC
Q 038521 173 AEETGRLDDLRKELLSKLLND-W-NVRNFQNINVNFQSKRLA--REKVLIVFDDVNHP------RQIELLIGRLDR-FAS 241 (324)
Q Consensus 173 vs~~~~~~~l~~~il~~l~~~-~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDDV~~~------~~~~~l~~~~~~-~~~ 241 (324)
.........+...++..+... . ...+... ....+.+.+. +++.+||||+++.. +.+..+...... ...
T Consensus 84 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~ 162 (386)
T 2qby_A 84 TRQIDTPYRVLADLLESLDVKVPFTGLSIAE-LYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKS 162 (386)
T ss_dssp HHHHCSHHHHHHHHTTTTSCCCCSSSCCHHH-HHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC-
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCC
Confidence 444456667777777666433 1 1112233 3455555554 34899999999753 334444433321 234
Q ss_pred CCeEEEEcCCchhhhhcCC-------cceEEeccCChhhHHHHHHHhh
Q 038521 242 GSRVIITARDKQVLTNCEI-------DHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 242 GSrIIiTTR~~~v~~~~~~-------~~~~~v~~L~~~es~~LF~~~a 282 (324)
+..+|+||+.......+.. ...+++++++.++..+++...+
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 5677888887654333221 1479999999999999998764
No 20
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.43 E-value=0.025 Score=51.86 Aligned_cols=113 Identities=12% Similarity=0.056 Sum_probs=68.9
Q ss_pred eeeeccccccccCCHHHHHHHHHHhhhcC-C-CCccchhccHHHHHHHh--cCCCcEEEEecCCCHH----HHHHH---H
Q 038521 165 YFAHNVRSAEETGRLDDLRKELLSKLLND-W-NVRNFQNINVNFQSKRL--AREKVLIVFDDVNHPR----QIELL---I 233 (324)
Q Consensus 165 ~wv~~v~~vs~~~~~~~l~~~il~~l~~~-~-~~~~~~~~~~~~l~~~L--~~kr~LlVLDDV~~~~----~~~~l---~ 233 (324)
+++. .....+...+...++..+... . ...+... ....+.+.+ .+++.+|+|||++... ..+.+ .
T Consensus 82 ~~i~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~ 156 (387)
T 2v1u_A 82 IYVN----ARHRETPYRVASAIAEAVGVRVPFTGLSVGE-VYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRIT 156 (387)
T ss_dssp EEEE----TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHH-HHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHH
T ss_pred EEEE----CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHH-HHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHh
Confidence 4555 555567788888888888554 2 2222333 455566666 3458899999998653 22333 2
Q ss_pred hcCCCC--CCCCeEEEEcCCchhhhhcC------Cc-ceEEeccCChhhHHHHHHHhh
Q 038521 234 GRLDRF--ASGSRVIITARDKQVLTNCE------ID-HIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 234 ~~~~~~--~~GSrIIiTTR~~~v~~~~~------~~-~~~~v~~L~~~es~~LF~~~a 282 (324)
...... ..+..+|.||+.......+. .. ..+++++++.++..+++...+
T Consensus 157 ~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 157 RINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp HGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred hchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 222211 45668888888764322111 11 478999999999999998874
No 21
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.0044 Score=56.25 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=53.8
Q ss_pred CCcEEEEecCCCHH-----H-HHHHHhcCCCCCCCCeEEEEcCCchhhhh----------c-CC-cceEEeccCChhhHH
Q 038521 214 EKVLIVFDDVNHPR-----Q-IELLIGRLDRFASGSRVIITARDKQVLTN----------C-EI-DHIYQMKELVHANAL 275 (324)
Q Consensus 214 kr~LlVLDDV~~~~-----~-~~~l~~~~~~~~~GSrIIiTTR~~~v~~~----------~-~~-~~~~~v~~L~~~es~ 275 (324)
++++|||||+.... + +..|...... .++.++|+|++....+.. . +. ...+++.+|+.+|+.
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~ 215 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAI 215 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHc-CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHH
Confidence 48999999996532 2 2333222211 246799999997654221 1 11 257899999999999
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHccc
Q 038521 276 KLFTQCAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 276 ~LF~~~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
+++...+-......+.. ..+...|+|
T Consensus 216 ~~l~~~~~~~~~~~~~~----~~i~~~t~G 241 (357)
T 2fna_A 216 EFLRRGFQEADIDFKDY----EVVYEKIGG 241 (357)
T ss_dssp HHHHHHHHHHTCCCCCH----HHHHHHHCS
T ss_pred HHHHHHHHHcCCCCCcH----HHHHHHhCC
Confidence 99987431111111122 678888888
No 22
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.93 E-value=0.042 Score=50.42 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=79.0
Q ss_pred ccccCCHHHHHHHHHHhhhcC-C-CCccchhccHHHHHHHhc--CCCcEEEEecCCC--HHHHHHHHhcCCCCC----CC
Q 038521 173 AEETGRLDDLRKELLSKLLND-W-NVRNFQNINVNFQSKRLA--REKVLIVFDDVNH--PRQIELLIGRLDRFA----SG 242 (324)
Q Consensus 173 vs~~~~~~~l~~~il~~l~~~-~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDDV~~--~~~~~~l~~~~~~~~----~G 242 (324)
.+...+...+...++..+... . ...+... ..+.+...+. +++.+|+||+++. ...+..|...+.... .+
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 81 GFIYRNFTAIIGEIARSLNIPFPRRGLSRDE-FLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHH-HHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC
T ss_pred CccCCCHHHHHHHHHHHhCccCCCCCCCHHH-HHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC
Confidence 455556778888888877543 2 1122333 4445555554 5688999999975 455666665554322 46
Q ss_pred CeEEEEcCCchhhhhcC-------CcceEEeccCChhhHHHHHHHhhc---CCCCCChhHHHHHHHHHHHc
Q 038521 243 SRVIITARDKQVLTNCE-------IDHIYQMKELVHANALKLFTQCAF---RRDHLDAGYTALAHKAFSTR 303 (324)
Q Consensus 243 SrIIiTTR~~~v~~~~~-------~~~~~~v~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~iv~~c 303 (324)
..||++|++........ ....+++++++.++..+++...+- ...... .+....+++++
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~ 227 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADIT 227 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHH
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHH
Confidence 68888888765433322 113689999999999999987753 222222 24455677777
No 23
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.021 Score=47.57 Aligned_cols=91 Identities=8% Similarity=0.064 Sum_probs=59.7
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCchhh-hhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQVL-TNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~-~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++.+|||||++. ....+.|...+.....+.++|+||+...-. ... ..-..+++++++.++..+++...+......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 5688999999975 355666666555555678899998765421 111 112378999999999999998877432211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....+++.++|
T Consensus 181 ~~--~~~~~~l~~~~~g 195 (226)
T 2chg_A 181 IT--EDGLEALIYISGG 195 (226)
T ss_dssp BC--HHHHHHHHHHHTT
T ss_pred CC--HHHHHHHHHHcCC
Confidence 11 2344566777777
No 24
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.29 E-value=0.057 Score=44.58 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=65.9
Q ss_pred CccEEecC--------------ccccCCCchHHHHHHHHhcCCceEEEeC-CCC-------C-cccchHHHHHHHhhcce
Q 038521 14 MHDVFVSF--------------RGEDTRDNFTSHLFSALFQNNIETFIDN-DLK-------R-GDEISESLLGTIEASTI 70 (324)
Q Consensus 14 ~~dvFis~--------------~g~D~~~~f~~~L~~~L~~~g~~~f~d~-~~~-------~-g~~~~~~~~~~i~~s~~ 70 (324)
+--+|+.| ..+| -.....|..--....+..|.|- ++. . -+.|.+.|.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 34578888 2333 3456666666666677777775 442 1 23588899999999999
Q ss_pred EEEEEecCccCchhhHHHHHHHHHHHHhcCCeEEeEEEe
Q 038521 71 SIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPVFYR 109 (324)
Q Consensus 71 ~i~v~S~~y~~s~wcl~El~~i~~~~~~~~~~viPvfy~ 109 (324)
+|+++|++...|.|-..|+...+. ..+.+||-|.-+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPD 118 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETT
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECC
Confidence 999999999999999999877662 245677776644
No 25
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.62 E-value=0.058 Score=48.09 Aligned_cols=91 Identities=11% Similarity=0.160 Sum_probs=59.4
Q ss_pred cCCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCchh-hhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-
Q 038521 212 AREKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQV-LTNC-EIDHIYQMKELVHANALKLFTQCAFRRD- 286 (324)
Q Consensus 212 ~~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~v-~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~- 286 (324)
.+++.+|||||++. ...++.|...+....+++++|+||+...- .... .....+++++++.++..+++...+....
T Consensus 105 ~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 184 (323)
T 1sxj_B 105 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV 184 (323)
T ss_dssp TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC
Confidence 34688999999975 45556565555444567888888876432 1111 1224789999999999999988764322
Q ss_pred CCChhHHHHHHHHHHHccc
Q 038521 287 HLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 287 ~~~~~~~~l~~~iv~~c~G 305 (324)
... .+....+++.|+|
T Consensus 185 ~~~---~~~~~~l~~~~~G 200 (323)
T 1sxj_B 185 KYT---NDGLEAIIFTAEG 200 (323)
T ss_dssp CBC---HHHHHHHHHHHTT
T ss_pred CCC---HHHHHHHHHHcCC
Confidence 112 2345667778877
No 26
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.30 E-value=0.22 Score=44.33 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=59.2
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCchh-hhhc-CCcceEEeccCChhhHHHHHHHhhcCCCC-
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQV-LTNC-EIDHIYQMKELVHANALKLFTQCAFRRDH- 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~v-~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~- 287 (324)
+++.+||+||++. ....+.|...+.....++++|+||....- .... .....+++++++.++..+++...+.....
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 5678999999974 45667776665555567889988876532 1111 01237899999999999999887643321
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....+++.++|
T Consensus 189 ~~---~~~~~~l~~~~~g 203 (327)
T 1iqp_A 189 LT---EEGLQAILYIAEG 203 (327)
T ss_dssp EC---HHHHHHHHHHHTT
T ss_pred CC---HHHHHHHHHHCCC
Confidence 12 2334566677776
No 27
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.65 E-value=1.7 Score=38.13 Aligned_cols=91 Identities=8% Similarity=0.082 Sum_probs=58.0
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++.+||+|++.. ....+.|...+....++.++|+||.... +.... ..-..+++++++.++..+++...+-.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999974 4556777777766667788888886554 21111 112478999999999999888776433211
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....+++.++|
T Consensus 181 i~--~~~l~~l~~~~~G 195 (319)
T 2chq_A 181 IT--EDGLEALIYISGG 195 (319)
T ss_dssp BC--HHHHHHHHHTTTT
T ss_pred CC--HHHHHHHHHHcCC
Confidence 10 1223445555555
No 28
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.14 E-value=1.2 Score=40.32 Aligned_cols=90 Identities=9% Similarity=0.079 Sum_probs=56.0
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
+++.+||+||+.. ....+.|...+.....+..+|++|.... +.... .....+++++++.++..+++...+-... .
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~ 197 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA 197 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4678999999974 4566777666654455677777776443 21111 1225789999999999998887653211 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.. .+....+++.++|
T Consensus 198 ~~---~~a~~~l~~~~~G 212 (373)
T 1jr3_A 198 HE---PRALQLLARAAEG 212 (373)
T ss_dssp BC---HHHHHHHHHHSSS
T ss_pred CC---HHHHHHHHHHCCC
Confidence 11 1234456666666
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.88 E-value=2.5 Score=36.64 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=46.4
Q ss_pred cCCCcEEEEecCCCH----------------HHHHHHHhcCC--CCCCCCeEEEEcCCchhhh-----hcCCcceEEecc
Q 038521 212 AREKVLIVFDDVNHP----------------RQIELLIGRLD--RFASGSRVIITARDKQVLT-----NCEIDHIYQMKE 268 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~----------------~~~~~l~~~~~--~~~~GSrIIiTTR~~~v~~-----~~~~~~~~~v~~ 268 (324)
..+..+|+|||++.. ..+..+...+. ....+..||.||.....+. .......++++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 456689999999653 12333332222 1234667888887654432 112345789999
Q ss_pred CChhhHHHHHHHhhcC
Q 038521 269 LVHANALKLFTQCAFR 284 (324)
Q Consensus 269 L~~~es~~LF~~~af~ 284 (324)
++.++-.++|..++..
T Consensus 188 p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRK 203 (285)
T ss_dssp CCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999888754
No 30
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.53 E-value=0.38 Score=40.49 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=50.4
Q ss_pred CCCcEEEEecCCCHH--H--HHHHHhcCCCC-CCCC-eEEEEcCCch---------hhhhcCCcceEEeccCChhhHHHH
Q 038521 213 REKVLIVFDDVNHPR--Q--IELLIGRLDRF-ASGS-RVIITARDKQ---------VLTNCEIDHIYQMKELVHANALKL 277 (324)
Q Consensus 213 ~kr~LlVLDDV~~~~--~--~~~l~~~~~~~-~~GS-rIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~es~~L 277 (324)
.+..+|||||++... . .+.+...+... ..+. ++|+||+... +...+.....+++++++.++..++
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~ 182 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA 182 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence 346799999997431 1 23333222110 1232 4777776432 111111126789999999999999
Q ss_pred HHHhhcCCC-CCChhHHHHHHHHHHHccc
Q 038521 278 FTQCAFRRD-HLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 278 F~~~af~~~-~~~~~~~~l~~~iv~~c~G 305 (324)
+...+-... ... .+....+++.++|
T Consensus 183 l~~~~~~~~~~~~---~~~~~~l~~~~~g 208 (242)
T 3bos_A 183 LQRRAAMRGLQLP---EDVGRFLLNRMAR 208 (242)
T ss_dssp HHHHHHHTTCCCC---HHHHHHHHHHTTT
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHHccC
Confidence 988764222 122 2344566777776
No 31
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=85.24 E-value=4.4 Score=35.69 Aligned_cols=89 Identities=10% Similarity=0.051 Sum_probs=52.6
Q ss_pred CCcEEEEecCCCH--HHHHHHHhcCCCC------------------CCCCeEEEEcCCchhhh-hc--CCcceEEeccCC
Q 038521 214 EKVLIVFDDVNHP--RQIELLIGRLDRF------------------ASGSRVIITARDKQVLT-NC--EIDHIYQMKELV 270 (324)
Q Consensus 214 kr~LlVLDDV~~~--~~~~~l~~~~~~~------------------~~GSrIIiTTR~~~v~~-~~--~~~~~~~v~~L~ 270 (324)
+..+|+||++... ...+.|...+... .++.++|.||....... .+ ....++++++++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 5679999999753 3444443322111 02456777766443211 11 123578999999
Q ss_pred hhhHHHHHHHhhcCCCC-CChhHHHHHHHHHHHccc
Q 038521 271 HANALKLFTQCAFRRDH-LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 271 ~~es~~LF~~~af~~~~-~~~~~~~l~~~iv~~c~G 305 (324)
.+|..+++...+..... .. .+....++++|+|
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G 202 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRIT---EEAALEIGRRSRG 202 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccC
Confidence 99999998887643321 22 2445667777776
No 32
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.50 E-value=1.4 Score=39.57 Aligned_cols=90 Identities=6% Similarity=0.131 Sum_probs=54.0
Q ss_pred cCCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-
Q 038521 212 AREKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD- 286 (324)
Q Consensus 212 ~~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~- 286 (324)
.+++-+++||++.. ....+.|...+....++.++|++|.+.. +.... ..-..+++++++.++..+.+...+-...
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 44677999999975 3444555554433345678888776543 32221 1125789999999999998887763222
Q ss_pred -CC-ChhHHHHHHHHHHHccc
Q 038521 287 -HL-DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 287 -~~-~~~~~~l~~~iv~~c~G 305 (324)
-+ + +....+++.++|
T Consensus 212 ~~~~~----~~l~~i~~~~~G 228 (354)
T 1sxj_E 212 QLETK----DILKRIAQASNG 228 (354)
T ss_dssp EECCS----HHHHHHHHHHTT
T ss_pred CCCcH----HHHHHHHHHcCC
Confidence 12 2 234455666665
No 33
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=81.63 E-value=1.2 Score=41.95 Aligned_cols=76 Identities=9% Similarity=0.202 Sum_probs=47.0
Q ss_pred HHHhcCCCcEEEEecCCCH----HHHHHHHhcCCC-CCCCCeEEEEcCCch---------hhhhcCCcceEEeccCChhh
Q 038521 208 SKRLAREKVLIVFDDVNHP----RQIELLIGRLDR-FASGSRVIITARDKQ---------VLTNCEIDHIYQMKELVHAN 273 (324)
Q Consensus 208 ~~~L~~kr~LlVLDDV~~~----~~~~~l~~~~~~-~~~GSrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~e 273 (324)
...+..+.-+|+|||+... ..-+.+...+.. ...|..||+||.... +...+....++++++++.++
T Consensus 188 ~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~ 267 (440)
T 2z4s_A 188 REKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_dssp HHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHH
T ss_pred HHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHH
Confidence 3344436789999999632 222333333211 135778999887631 22222223578899999999
Q ss_pred HHHHHHHhhc
Q 038521 274 ALKLFTQCAF 283 (324)
Q Consensus 274 s~~LF~~~af 283 (324)
-..++...+-
T Consensus 268 r~~iL~~~~~ 277 (440)
T 2z4s_A 268 RKSIARKMLE 277 (440)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988763
No 34
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.20 E-value=4.2 Score=36.51 Aligned_cols=86 Identities=8% Similarity=0.093 Sum_probs=56.8
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCCCC
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRDHL 288 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~~~ 288 (324)
+++-++|+|++.. ....+.|...+....+++.+|++|.+.+ +.... ..-..+++++++.++..+.+.... ..
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~~ 182 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----TM 182 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----CC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----CC
Confidence 4577899999984 4556777776665556778777776653 33322 122578999999999999887765 11
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. .+....+++.++|
T Consensus 183 ~---~~~~~~l~~~s~G 196 (334)
T 1a5t_A 183 S---QDALLAALRLSAG 196 (334)
T ss_dssp C---HHHHHHHHHHTTT
T ss_pred C---HHHHHHHHHHcCC
Confidence 1 1233556777777
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=79.18 E-value=9.4 Score=32.27 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=42.2
Q ss_pred cCCCcEEEEecCCCH-----------------HHHHHHHhcCCCC--CCCCeEEEEcCCchhhhh-c----CCcceEEec
Q 038521 212 AREKVLIVFDDVNHP-----------------RQIELLIGRLDRF--ASGSRVIITARDKQVLTN-C----EIDHIYQMK 267 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~-----------------~~~~~l~~~~~~~--~~GSrIIiTTR~~~v~~~-~----~~~~~~~v~ 267 (324)
.....+|+||+++.. ..+..+...+... ..+..||.||.....+.. . ..+..++++
T Consensus 96 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 445789999999854 1123333322221 235567777765443211 1 134678899
Q ss_pred cCChhhHHHHHHHhhc
Q 038521 268 ELVHANALKLFTQCAF 283 (324)
Q Consensus 268 ~L~~~es~~LF~~~af 283 (324)
.++.++-.+++..++-
T Consensus 176 ~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 176 LPTLQERREIFEQHLK 191 (262)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988764
No 36
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=78.26 E-value=8.1 Score=34.13 Aligned_cols=59 Identities=17% Similarity=0.357 Sum_probs=38.8
Q ss_pred CCcEEEEecCCCHH---HHHHHHhcCCCCCCCCeEEEEcCCchh-----hhhcCCcceEEeccCChhhHH
Q 038521 214 EKVLIVFDDVNHPR---QIELLIGRLDRFASGSRVIITARDKQV-----LTNCEIDHIYQMKELVHANAL 275 (324)
Q Consensus 214 kr~LlVLDDV~~~~---~~~~l~~~~~~~~~GSrIIiTTR~~~v-----~~~~~~~~~~~v~~L~~~es~ 275 (324)
++-+|+|||+.... ..+.|...+.....+.++|+||....- ...+ .++++++++.++-.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDKI 171 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHHH
Confidence 67899999998653 555555544333356788888875442 2222 47889999988743
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.67 E-value=5.1 Score=34.51 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=41.2
Q ss_pred hcCCCcEEEEecCCCH------------HHHHHHHhcCCC---CCCCCeEEEEcCCchhhhhc---C-CcceEEeccCCh
Q 038521 211 LAREKVLIVFDDVNHP------------RQIELLIGRLDR---FASGSRVIITARDKQVLTNC---E-IDHIYQMKELVH 271 (324)
Q Consensus 211 L~~kr~LlVLDDV~~~------------~~~~~l~~~~~~---~~~GSrIIiTTR~~~v~~~~---~-~~~~~~v~~L~~ 271 (324)
...+..+|+|||+... ..++.|...+.. .+....||.||.....+... + ....+++++|+.
T Consensus 121 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~ 200 (272)
T 1d2n_A 121 YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIAT 200 (272)
T ss_dssp HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEE
T ss_pred HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccH
Confidence 3456789999998543 223444443332 23344577788777554431 1 245688999988
Q ss_pred -hhHHHHHHH
Q 038521 272 -ANALKLFTQ 280 (324)
Q Consensus 272 -~es~~LF~~ 280 (324)
++-.+++..
T Consensus 201 r~~i~~i~~~ 210 (272)
T 1d2n_A 201 GEQLLEALEL 210 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 555555544
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=69.70 E-value=6.4 Score=34.39 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=47.8
Q ss_pred CCcEEEEecCC-----------CHHHHHHHHhcCCCCCCCCeEEEEcCCch----------hhhhcCCcceEEeccCChh
Q 038521 214 EKVLIVFDDVN-----------HPRQIELLIGRLDRFASGSRVIITARDKQ----------VLTNCEIDHIYQMKELVHA 272 (324)
Q Consensus 214 kr~LlVLDDV~-----------~~~~~~~l~~~~~~~~~GSrIIiTTR~~~----------v~~~~~~~~~~~v~~L~~~ 272 (324)
+..+|+||++. +......|...+.....+.+||.||.... +... ....+++++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHH
Confidence 45699999997 44555666665554456678888886432 2222 2367899999999
Q ss_pred hHHHHHHHhhc
Q 038521 273 NALKLFTQCAF 283 (324)
Q Consensus 273 es~~LF~~~af 283 (324)
+-.+++..++-
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987764
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=69.59 E-value=25 Score=30.99 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=51.9
Q ss_pred cCCCcEEEEecCCCHH-------------HHHHHHhcC---CCCCCCCeEEEEcCCchhhhhc---CCcceEEeccCChh
Q 038521 212 AREKVLIVFDDVNHPR-------------QIELLIGRL---DRFASGSRVIITARDKQVLTNC---EIDHIYQMKELVHA 272 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~~-------------~~~~l~~~~---~~~~~GSrIIiTTR~~~v~~~~---~~~~~~~v~~L~~~ 272 (324)
..+..+|+||++.... ....+...+ .....+..||.||.....+... ..+..+.++..+.+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~ 187 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 187 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHH
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHH
Confidence 3466899999997431 123332222 2233456677677654432110 13456788999999
Q ss_pred hHHHHHHHhhcCCCCCChhHHHHHHHHHHHccc
Q 038521 273 NALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 273 es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
+-.++|..++-+.....+ ......+++.+.|
T Consensus 188 ~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g 218 (322)
T 3eie_A 188 ARTTMFEINVGDTPCVLT--KEDYRTLGAMTEG 218 (322)
T ss_dssp HHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTT
T ss_pred HHHHHHHHHhccCCCCCC--HHHHHHHHHHcCC
Confidence 999999988754332111 1123355566665
No 40
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.66 E-value=12 Score=35.90 Aligned_cols=88 Identities=13% Similarity=0.170 Sum_probs=49.8
Q ss_pred CCCcEEEEecCCCH-----HHHHHHHhcCCCCCCCCeEEEEcCCch---hhhhcCCcceEEeccCChhhHHHHHHHhhcC
Q 038521 213 REKVLIVFDDVNHP-----RQIELLIGRLDRFASGSRVIITARDKQ---VLTNCEIDHIYQMKELVHANALKLFTQCAFR 284 (324)
Q Consensus 213 ~kr~LlVLDDV~~~-----~~~~~l~~~~~~~~~GSrIIiTTR~~~---v~~~~~~~~~~~v~~L~~~es~~LF~~~af~ 284 (324)
+++.+|+||++... ..+..|...+.. .+.+||+++.+.. +.........+++++++.++..+++...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56789999999642 123333333221 2345666655432 2221122357899999999999988877653
Q ss_pred CC-CCChhHHHHHHHHHHHccc
Q 038521 285 RD-HLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 285 ~~-~~~~~~~~l~~~iv~~c~G 305 (324)
.. ...+ +....|++.++|
T Consensus 225 ~~~~i~~---~~l~~la~~s~G 243 (516)
T 1sxj_A 225 EKFKLDP---NVIDRLIQTTRG 243 (516)
T ss_dssp HTCCCCT---THHHHHHHHTTT
T ss_pred cCCCCCH---HHHHHHHHHcCC
Confidence 22 1222 224456666766
No 41
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=67.43 E-value=4.8 Score=33.59 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=36.6
Q ss_pred cHHHHHHHhcCCCc-EEEEecCCCH-----HHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEeccCC
Q 038521 203 NVNFQSKRLAREKV-LIVFDDVNHP-----RQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMKELV 270 (324)
Q Consensus 203 ~~~~l~~~L~~kr~-LlVLDDV~~~-----~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~~L~ 270 (324)
.....++.+...+| |||||++... -..+.+...+...-...-||+|+|...-.-.--++.+-+|....
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 34456666666555 9999998421 11222222222223566899999986421111145566666543
No 42
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.09 E-value=16 Score=32.39 Aligned_cols=90 Identities=10% Similarity=0.187 Sum_probs=54.5
Q ss_pred CCCcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-C
Q 038521 213 REKVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-H 287 (324)
Q Consensus 213 ~kr~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~ 287 (324)
+++-+|+||++.. ....+.|...+.......++|++|.... +.... ..-..+++++++.++....+...+-... .
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 211 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVK 211 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC
Confidence 3456999999864 3445555555443345667777775433 21111 0113788999999999998887664322 1
Q ss_pred CChhHHHHHHHHHHHccc
Q 038521 288 LDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 288 ~~~~~~~l~~~iv~~c~G 305 (324)
.+ .+....+++.++|
T Consensus 212 i~---~~~l~~l~~~~~G 226 (353)
T 1sxj_D 212 CD---DGVLERILDISAG 226 (353)
T ss_dssp CC---HHHHHHHHHHTSS
T ss_pred CC---HHHHHHHHHHcCC
Confidence 22 2345667777776
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=64.65 E-value=7.4 Score=34.44 Aligned_cols=69 Identities=10% Similarity=0.167 Sum_probs=41.9
Q ss_pred CCcEEEEecCCCHH----HHHHHHhcCCC-CCCCCeEEEEcCCch---------hhhhcCCcceEEeccCChhhHHHHHH
Q 038521 214 EKVLIVFDDVNHPR----QIELLIGRLDR-FASGSRVIITARDKQ---------VLTNCEIDHIYQMKELVHANALKLFT 279 (324)
Q Consensus 214 kr~LlVLDDV~~~~----~~~~l~~~~~~-~~~GSrIIiTTR~~~---------v~~~~~~~~~~~v~~L~~~es~~LF~ 279 (324)
+.-+|+|||+.... ..+.+...+.. ...|.+||+||.... +...+....++++++ +.++-.+++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 36799999996432 22333322211 134668888875431 122222235789999 9999999998
Q ss_pred Hhhc
Q 038521 280 QCAF 283 (324)
Q Consensus 280 ~~af 283 (324)
..+.
T Consensus 177 ~~~~ 180 (324)
T 1l8q_A 177 EKLK 180 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8774
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=63.08 E-value=60 Score=28.64 Aligned_cols=93 Identities=10% Similarity=0.000 Sum_probs=50.5
Q ss_pred cCCCcEEEEecCCCH-------------HHHHHHHhcCCC---CCCCCeEEEEcCCchhhhh-c--CCcceEEeccCChh
Q 038521 212 AREKVLIVFDDVNHP-------------RQIELLIGRLDR---FASGSRVIITARDKQVLTN-C--EIDHIYQMKELVHA 272 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~-------------~~~~~l~~~~~~---~~~GSrIIiTTR~~~v~~~-~--~~~~~~~v~~L~~~ 272 (324)
..+..+|+||+++.. .....+...+.. ...+-.||.||.....+.. . ..+..+.++..+.+
T Consensus 103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPH 182 (322)
T ss_dssp HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHH
T ss_pred hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHH
Confidence 356789999999754 112223222221 2344556666654432211 0 23467889999999
Q ss_pred hHHHHHHHhhcCCCCCChhHHHHHHHHHHHcccc
Q 038521 273 NALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQV 306 (324)
Q Consensus 273 es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 306 (324)
+-.+++..+.-+...... ......+++.+.|.
T Consensus 183 ~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G~ 214 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSLT--EADFRELGRKTDGY 214 (322)
T ss_dssp HHHHHHHHHHTTCCBCCC--HHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCCC
Confidence 999999887633221111 12234555666663
No 45
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=63.07 E-value=7.1 Score=34.73 Aligned_cols=69 Identities=9% Similarity=0.159 Sum_probs=49.8
Q ss_pred CCCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCc-hhhhhcCCcceEEeccCChhhHHHHHHHhh
Q 038521 213 REKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDK-QVLTNCEIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 213 ~kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~-~v~~~~~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
+++-++|+|++. +....++|...+....+.+++|++|.+. .+...+... +++++++++++..+.+...+
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 456688999997 4466777777665555677887776544 454444344 89999999999999887765
No 46
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=62.66 E-value=52 Score=29.50 Aligned_cols=91 Identities=9% Similarity=-0.049 Sum_probs=51.0
Q ss_pred cCCCcEEEEecCCCHH-------------HHHHHHhcC---CCCCCCCeEEEEcCCchh-----hhhcCCcceEEeccCC
Q 038521 212 AREKVLIVFDDVNHPR-------------QIELLIGRL---DRFASGSRVIITARDKQV-----LTNCEIDHIYQMKELV 270 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~~-------------~~~~l~~~~---~~~~~GSrIIiTTR~~~v-----~~~~~~~~~~~v~~L~ 270 (324)
..+..+|+||+++... ....+...+ .....+..||.||..... .. ..+..+.++..+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 218 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 218 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCC
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcC
Confidence 3567899999997431 122332222 222345566667764432 22 235678899999
Q ss_pred hhhHHHHHHHhhcCCCCCChhHHHHHHHHHHHcccc
Q 038521 271 HANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQV 306 (324)
Q Consensus 271 ~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 306 (324)
.++-.+++..+.-......+ ......+++.+.|.
T Consensus 219 ~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~ 252 (355)
T 2qp9_X 219 LAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGY 252 (355)
T ss_dssp HHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCC
Confidence 99999999887643321111 12234566667663
No 47
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=61.92 E-value=59 Score=30.21 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=53.0
Q ss_pred cCCCcEEEEecCCCH-------------HHHHHHHhcCCC---CCCCCeEEEEcCCchhhhhc---CCcceEEeccCChh
Q 038521 212 AREKVLIVFDDVNHP-------------RQIELLIGRLDR---FASGSRVIITARDKQVLTNC---EIDHIYQMKELVHA 272 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~-------------~~~~~l~~~~~~---~~~GSrIIiTTR~~~v~~~~---~~~~~~~v~~L~~~ 272 (324)
..+..+|+||+++.. .....+...+.. ...+..||.||.....+... ..+..+.++..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 456789999999854 223444444433 23456677777654332110 23457788888888
Q ss_pred hHHHHHHHhhcCCCCCChhHHHHHHHHHHHccc
Q 038521 273 NALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 273 es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~G 305 (324)
+-..+|..++-......+ ......+++.+.|
T Consensus 305 ~r~~il~~~l~~~~~~l~--~~~l~~la~~t~G 335 (444)
T 2zan_A 305 ARAAMFRLHLGSTQNSLT--EADFQELGRKTDG 335 (444)
T ss_dssp HHHHHHHHHHTTSCEECC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCCCC--HHHHHHHHHHcCC
Confidence 888998887643221111 1223355566666
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=61.83 E-value=36 Score=30.56 Aligned_cols=93 Identities=8% Similarity=0.053 Sum_probs=49.6
Q ss_pred cCCCcEEEEecCCCH-------------HHHHHHHhcCC----CCCCCCeEEEEcCCchhhhh-c--CCcceEEeccCCh
Q 038521 212 AREKVLIVFDDVNHP-------------RQIELLIGRLD----RFASGSRVIITARDKQVLTN-C--EIDHIYQMKELVH 271 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~-------------~~~~~l~~~~~----~~~~GSrIIiTTR~~~v~~~-~--~~~~~~~v~~L~~ 271 (324)
..+..+|+||++... .....+...+. ....+..||.||.....+.. . .....+.++..+.
T Consensus 174 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~ 253 (357)
T 3d8b_A 174 CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEA 253 (357)
T ss_dssp HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCH
T ss_pred hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCH
Confidence 356789999999532 11223332222 11234456667754432111 0 2345778899999
Q ss_pred hhHHHHHHHhhcCCCCCChhHHHHHHHHHHHcccc
Q 038521 272 ANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQV 306 (324)
Q Consensus 272 ~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 306 (324)
++-.+++...+-....... .+....+++.+.|.
T Consensus 254 ~~r~~il~~~~~~~~~~l~--~~~l~~la~~t~G~ 286 (357)
T 3d8b_A 254 SARKQIVINLMSKEQCCLS--EEEIEQIVQQSDAF 286 (357)
T ss_dssp HHHHHHHHHHHHTSCBCCC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhcCCCcc--HHHHHHHHHHcCCC
Confidence 9988888877633221111 12344566666663
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=58.68 E-value=62 Score=29.28 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=48.6
Q ss_pred cCCCcEEEEecCCCH-------------HHHHHHHhcC----CCCCCCCeEEEEcCCchhhhh-c--CCcceEEeccCCh
Q 038521 212 AREKVLIVFDDVNHP-------------RQIELLIGRL----DRFASGSRVIITARDKQVLTN-C--EIDHIYQMKELVH 271 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~-------------~~~~~l~~~~----~~~~~GSrIIiTTR~~~v~~~-~--~~~~~~~v~~L~~ 271 (324)
.....+|+||+++.. .....+...+ ......-+||.||....-+.. . .....+.++..+.
T Consensus 205 ~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~ 284 (389)
T 3vfd_A 205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNE 284 (389)
T ss_dssp HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCH
T ss_pred hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCH
Confidence 345679999999643 1112222211 111233456666654332211 0 1235678899999
Q ss_pred hhHHHHHHHhhcCCCCCChhHHHHHHHHHHHcccc
Q 038521 272 ANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQV 306 (324)
Q Consensus 272 ~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 306 (324)
++-.+++...+-....... .+....+++.+.|.
T Consensus 285 ~~r~~il~~~~~~~~~~l~--~~~~~~la~~~~g~ 317 (389)
T 3vfd_A 285 ETRLLLLKNLLCKQGSPLT--QKELAQLARMTDGY 317 (389)
T ss_dssp HHHHHHHHHHHTTSCCCSC--HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCC
Confidence 9999998877643222211 12345666777763
No 50
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=57.54 E-value=1e+02 Score=27.33 Aligned_cols=103 Identities=10% Similarity=0.183 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHHHHhhhcC-CCCc-cchhccHHHHHHHh---cCCCcEEEEecCCCH---HHHHHHHhcCCCCCCCCe--
Q 038521 175 ETGRLDDLRKELLSKLLND-WNVR-NFQNINVNFQSKRL---AREKVLIVFDDVNHP---RQIELLIGRLDRFASGSR-- 244 (324)
Q Consensus 175 ~~~~~~~l~~~il~~l~~~-~~~~-~~~~~~~~~l~~~L---~~kr~LlVLDDV~~~---~~~~~l~~~~~~~~~GSr-- 244 (324)
...+...+...|++++.+. .... ..+. + +.+.+.+ .+++++|+||.++.. +.+-.+..... ..+|+
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~-L-~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~ 165 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEA-L-NFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLS 165 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHH-H-HHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEE
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHH-H-HHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEE
Confidence 3456678888999998765 2111 1122 2 2222222 456789999999864 22333322111 13333
Q ss_pred EEEEcCCchhh---------hhcCCcceEEeccCChhhHHHHHHHhh
Q 038521 245 VIITARDKQVL---------TNCEIDHIYQMKELVHANALKLFTQCA 282 (324)
Q Consensus 245 IIiTTR~~~v~---------~~~~~~~~~~v~~L~~~es~~LF~~~a 282 (324)
||.++...+.. ..++ ...++.++++.+|-.+++..++
T Consensus 166 vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 166 IICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp EEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 34445443321 1222 1468899999999999888776
No 51
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=57.08 E-value=31 Score=30.63 Aligned_cols=71 Identities=8% Similarity=-0.030 Sum_probs=47.8
Q ss_pred cCCCcEEEEecCCC---HHHHHHHHhcCCCCCCCCeEEEEcCC-------chhhhhcC-CcceEEeccCChhhHHHHHHH
Q 038521 212 AREKVLIVFDDVNH---PRQIELLIGRLDRFASGSRVIITARD-------KQVLTNCE-IDHIYQMKELVHANALKLFTQ 280 (324)
Q Consensus 212 ~~kr~LlVLDDV~~---~~~~~~l~~~~~~~~~GSrIIiTTR~-------~~v~~~~~-~~~~~~v~~L~~~es~~LF~~ 280 (324)
-+++=++|+|++.. ...++.|...+....+++.+|++|-. +.+...+. ...+++..+++.++-......
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 45667888999854 46677777766655578888877643 23444432 235788999998888776666
Q ss_pred hh
Q 038521 281 CA 282 (324)
Q Consensus 281 ~a 282 (324)
.+
T Consensus 154 ~~ 155 (343)
T 1jr3_D 154 RA 155 (343)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 52
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=54.99 E-value=32 Score=32.22 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=40.6
Q ss_pred cCCCcEEEEecCCCH--HHHHHHHhcCCCCCCCCeEEE-EcCCch--hhhhc-CCcceEEeccCChhhHHHHHHHhhc
Q 038521 212 AREKVLIVFDDVNHP--RQIELLIGRLDRFASGSRVII-TARDKQ--VLTNC-EIDHIYQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~--~~~~~l~~~~~~~~~GSrIIi-TTR~~~--v~~~~-~~~~~~~v~~L~~~es~~LF~~~af 283 (324)
.+++.+|+||++... .+.+.|...+.. + .-.+|. ||.+.. +.... .-..++.+++++.++-.+++.+.+-
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence 467889999999753 344555544442 1 223333 555442 11111 1234788999999999998887763
No 53
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=51.93 E-value=60 Score=24.95 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHH-hhcceEEEE
Q 038521 27 RDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTI-EASTISIII 74 (324)
Q Consensus 27 ~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i-~~s~~~i~v 74 (324)
...++..+...|...|+++-+|. ...++.+...|.++- +..-+.+||
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~-~r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIF-LNTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEE-CTTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEec-CCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 46799999999999999999874 122678887777763 344444444
No 54
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=51.45 E-value=66 Score=25.56 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=50.7
Q ss_pred chHHHHHHHHhcCCceEEEeC--CCCCcccchHHHHHHHhhcceEEEEEec---CccCchhhHHHHHHHHHHHHhcCCeE
Q 038521 29 NFTSHLFSALFQNNIETFIDN--DLKRGDEISESLLGTIEASTISIIIFSE---KYASSKWCLDELLKILECKRNYGQIV 103 (324)
Q Consensus 29 ~f~~~L~~~L~~~g~~~f~d~--~~~~g~~~~~~~~~~i~~s~~~i~v~S~---~y~~s~wcl~El~~i~~~~~~~~~~v 103 (324)
.+...+.+.|+..|+.++.-. .....+.|...-.++|++|++.|++++| .+..+. ..-|+.... ..+.+|
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~G-TafEiGyA~----AlgKPV 101 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCG-TAFEVGCAA----ALNKMV 101 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHH-HHHHHHHHH----HTTCEE
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCc-HHHHHHHHH----HCCCEE
Confidence 588999999999999888742 2223345566668999999999999985 555554 455665544 344555
Q ss_pred EeE
Q 038521 104 IPV 106 (324)
Q Consensus 104 iPv 106 (324)
+-+
T Consensus 102 i~l 104 (161)
T 2f62_A 102 LTF 104 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 55
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=51.14 E-value=23 Score=27.52 Aligned_cols=61 Identities=10% Similarity=0.077 Sum_probs=39.5
Q ss_pred EEecCccccCCCchHHHHHHHHhcCCceEEEeC-----------------CCCCc-c-cchHHHHHHHhhcceEEEEEec
Q 038521 17 VFVSFRGEDTRDNFTSHLFSALFQNNIETFIDN-----------------DLKRG-D-EISESLLGTIEASTISIIIFSE 77 (324)
Q Consensus 17 vFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~-----------------~~~~g-~-~~~~~~~~~i~~s~~~i~v~S~ 77 (324)
||||.+..| +.-+-.+.+.|...|++++-.. +...| + .-.+++.+.|++-++-+||..+
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999988876 3344456778888888876321 11112 1 0005688888888888888887
Q ss_pred Cc
Q 038521 78 KY 79 (324)
Q Consensus 78 ~y 79 (324)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 56
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.76 E-value=46 Score=29.42 Aligned_cols=89 Identities=10% Similarity=0.154 Sum_probs=51.9
Q ss_pred CCcEEEEecCC--CHHHHHHHHhcCCCCCCCCeEEEEcCCch-hhhhc-CCcceEEeccCChhhHHHHHHHhhcCCC-CC
Q 038521 214 EKVLIVFDDVN--HPRQIELLIGRLDRFASGSRVIITARDKQ-VLTNC-EIDHIYQMKELVHANALKLFTQCAFRRD-HL 288 (324)
Q Consensus 214 kr~LlVLDDV~--~~~~~~~l~~~~~~~~~GSrIIiTTR~~~-v~~~~-~~~~~~~v~~L~~~es~~LF~~~af~~~-~~ 288 (324)
.+-++|+|++. .....+.|...+......+++|++|.... +.... .....+++.+++.++..+.+...+-... ..
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 46789999986 34455555555443345667777775432 21111 1124688999999988887776552221 12
Q ss_pred ChhHHHHHHHHHHHccc
Q 038521 289 DAGYTALAHKAFSTRTQ 305 (324)
Q Consensus 289 ~~~~~~l~~~iv~~c~G 305 (324)
. .+..+.+++.++|
T Consensus 190 ~---~~~~~~i~~~s~G 203 (340)
T 1sxj_C 190 S---PNAEKALIELSNG 203 (340)
T ss_dssp C---HHHHHHHHHHHTT
T ss_pred C---HHHHHHHHHHcCC
Confidence 2 2334566777777
No 57
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=49.39 E-value=48 Score=26.36 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=50.9
Q ss_pred CCccEEec--CccccCCCchHHHHHHHHhcCCceEEEeCCC-----CCcc-------cchHHHHHHHhhcceEEEEEecC
Q 038521 13 KMHDVFVS--FRGEDTRDNFTSHLFSALFQNNIETFIDNDL-----KRGD-------EISESLLGTIEASTISIIIFSEK 78 (324)
Q Consensus 13 ~~~dvFis--~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~-----~~g~-------~~~~~~~~~i~~s~~~i~v~S~~ 78 (324)
++..|||+ +.+..-.......+.+.|+..| .++.+... ..|. .|...-.+.|++|++.|++++
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-- 86 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-- 86 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence 34569997 2222111214588899999999 77654311 1121 123344688999999999987
Q ss_pred ccCchhhHHHHHHHHHHHHhcCCeEEeE
Q 038521 79 YASSKWCLDELLKILECKRNYGQIVIPV 106 (324)
Q Consensus 79 y~~s~wcl~El~~i~~~~~~~~~~viPv 106 (324)
+. +.=+.-|+..... .+.+|+-+
T Consensus 87 ~~-d~Gt~~EiGyA~a----lgKPVi~l 109 (165)
T 2khz_A 87 QP-SLGVGYELGRAVA----LGKPILCL 109 (165)
T ss_dssp SC-CHHHHHHHHHHHH----TCSSEEEE
T ss_pred CC-CCCHHHHHHHHHH----CCCEEEEE
Confidence 44 4445567766543 45555543
No 58
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=49.31 E-value=39 Score=30.73 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=33.2
Q ss_pred HhcCCC--cEEEEecCC---CHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEe
Q 038521 210 RLAREK--VLIVFDDVN---HPRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQM 266 (324)
Q Consensus 210 ~L~~kr--~LlVLDDV~---~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v 266 (324)
.|-... -+|+||++. +....+.+...+.....|..||++|-+.+++.. ++.++.|
T Consensus 309 ~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 309 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp HHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 343444 789999997 333333443333322347889989988888764 3445544
No 59
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=47.33 E-value=74 Score=28.14 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=48.2
Q ss_pred CcEEEEecCCC--HHHHHHHHhcCCCCCCCCeEEEEcC-C----------------chhhhhcCCcceEEeccCChhhHH
Q 038521 215 KVLIVFDDVNH--PRQIELLIGRLDRFASGSRVIITAR-D----------------KQVLTNCEIDHIYQMKELVHANAL 275 (324)
Q Consensus 215 r~LlVLDDV~~--~~~~~~l~~~~~~~~~GSrIIiTTR-~----------------~~v~~~~~~~~~~~v~~L~~~es~ 275 (324)
+.+|+||++.. .+..+.|...+...... .++++|. . ..+...+ ..+++++++.++..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHH
Confidence 45999999974 45566666666543333 3444443 1 1122222 34799999999999
Q ss_pred HHHHHhhcCCCC-CChhHHHHHHHHHHHcc
Q 038521 276 KLFTQCAFRRDH-LDAGYTALAHKAFSTRT 304 (324)
Q Consensus 276 ~LF~~~af~~~~-~~~~~~~l~~~iv~~c~ 304 (324)
+++...+-.... .+ .+....+++++.
T Consensus 266 ~il~~~~~~~~~~~~---~~~l~~l~~~~~ 292 (368)
T 3uk6_A 266 QILRIRCEEEDVEMS---EDAYTVLTRIGL 292 (368)
T ss_dssp HHHHHHHHHTTCCBC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHhc
Confidence 999877643221 22 223445555555
No 60
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.08 E-value=80 Score=22.69 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=53.1
Q ss_pred cHHHHHHHhcCCCcEEEEecCCCHHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcC-----C-cceEEeccCChhhHHH
Q 038521 203 NVNFQSKRLAREKVLIVFDDVNHPRQIELLIGRLDRFASGSRVIITARDKQVLTNCE-----I-DHIYQMKELVHANALK 276 (324)
Q Consensus 203 ~~~~l~~~L~~kr~LlVLDDV~~~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~-----~-~~~~~v~~L~~~es~~ 276 (324)
+..++++...+.-|-+ -||.+.+.++.=...+..-.+--+|+|.+.+++++..|- . -.++-+-.=.++.-++
T Consensus 14 likkikkevenqgyqv--rdvndsdelkkemkklaeeknfekiliisndkqllkemlelisklgykvflllqdqdenele 91 (134)
T 2lci_A 14 LIKKIKKEVENQGYQV--RDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQDENELE 91 (134)
T ss_dssp HHHHHHHHTTTTTCEE--EEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECSCHHHHH
T ss_pred HHHHHHHHHHccCeee--eecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecCchhHHH
Confidence 4555555555555532 466666655443332222233447888888888776551 0 1233222222334455
Q ss_pred HHHHhhcCCCC------CChhHHHHHHHHHHHcccc
Q 038521 277 LFTQCAFRRDH------LDAGYTALAHKAFSTRTQV 306 (324)
Q Consensus 277 LF~~~af~~~~------~~~~~~~l~~~iv~~c~Gl 306 (324)
-|.+..=.+.. ..++-..+.+++++++|.|
T Consensus 92 efkrkiesqgyevrkvtddeealkivrefmqkagsl 127 (134)
T 2lci_A 92 EFKRKIESQGYEVRKVTDDEEALKIVREFMQKAGSL 127 (134)
T ss_dssp HHHHHHHTTTCEEEEECCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeecCChHHHHHHHHHHHHhcccc
Confidence 57666543331 2244566777777777754
No 61
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=39.85 E-value=89 Score=24.62 Aligned_cols=84 Identities=18% Similarity=0.284 Sum_probs=51.4
Q ss_pred cEEec--CccccCCCchHHHHHHHHhcCCceEEEeC----CC-CCcc-------cchHHHHHHHhhcceEEEEEecCccC
Q 038521 16 DVFVS--FRGEDTRDNFTSHLFSALFQNNIETFIDN----DL-KRGD-------EISESLLGTIEASTISIIIFSEKYAS 81 (324)
Q Consensus 16 dvFis--~~g~D~~~~f~~~L~~~L~~~g~~~f~d~----~~-~~g~-------~~~~~~~~~i~~s~~~i~v~S~~y~~ 81 (324)
.||++ ++|.+....+...+.+.|++.| .|+-.. ++ ..|+ .+...-.++|++|++.|++++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 36664 5554334467899999999999 675322 11 1222 255666888999999999988 33
Q ss_pred chhhHHHHHHHHHHHHhcCCeEEeEE
Q 038521 82 SKWCLDELLKILECKRNYGQIVIPVF 107 (324)
Q Consensus 82 s~wcl~El~~i~~~~~~~~~~viPvf 107 (324)
|.=..-|+..... .+.+|+-++
T Consensus 80 d~Gt~~EiG~A~a----lgkPV~~l~ 101 (152)
T 4fyk_A 80 SLGVGYELGRAVA----LGKPILCLF 101 (152)
T ss_dssp CHHHHHHHHHHHH----TTCCEEEEE
T ss_pred CCCHHHHHHHHHH----cCCeEEEEE
Confidence 4445567666553 345555444
No 62
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=35.82 E-value=1.8e+02 Score=23.69 Aligned_cols=31 Identities=13% Similarity=0.533 Sum_probs=24.0
Q ss_pred EEecCccccC--CCchHHHHHHHHhcCCceEEEe
Q 038521 17 VFVSFRGEDT--RDNFTSHLFSALFQNNIETFID 48 (324)
Q Consensus 17 vFis~~g~D~--~~~f~~~L~~~L~~~g~~~f~d 48 (324)
-||.|-|.|. +.+.+..|.+.|. +|+.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 4999999993 3678889999996 58876654
No 63
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=35.75 E-value=94 Score=27.10 Aligned_cols=71 Identities=10% Similarity=0.192 Sum_probs=42.8
Q ss_pred CCCcEEEEecCCCH--HHHHHHHhcCCCC------------------CCCCeEEEEcCCchhhh-hc--CCcceEEeccC
Q 038521 213 REKVLIVFDDVNHP--RQIELLIGRLDRF------------------ASGSRVIITARDKQVLT-NC--EIDHIYQMKEL 269 (324)
Q Consensus 213 ~kr~LlVLDDV~~~--~~~~~l~~~~~~~------------------~~GSrIIiTTR~~~v~~-~~--~~~~~~~v~~L 269 (324)
.+..+|+||++... ...+.|...+... .++-++|.+|....... .. ..+..++++++
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~ 184 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFY 184 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCc
Confidence 45789999999743 4444444332211 12346666665533211 11 12467999999
Q ss_pred ChhhHHHHHHHhhc
Q 038521 270 VHANALKLFTQCAF 283 (324)
Q Consensus 270 ~~~es~~LF~~~af 283 (324)
+.++...++...+-
T Consensus 185 ~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 185 KDSELALILQKAAL 198 (338)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887763
No 64
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=35.00 E-value=2e+02 Score=24.30 Aligned_cols=91 Identities=11% Similarity=0.015 Sum_probs=47.9
Q ss_pred cCCCcEEEEecCCCH-------------HHHHHHHh---cCCCC--CCCCeEEEEcCCchh-----hhhcCCcceEEecc
Q 038521 212 AREKVLIVFDDVNHP-------------RQIELLIG---RLDRF--ASGSRVIITARDKQV-----LTNCEIDHIYQMKE 268 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~-------------~~~~~l~~---~~~~~--~~GSrIIiTTR~~~v-----~~~~~~~~~~~v~~ 268 (324)
..+..+|+||++... .....+.. .++.. +.+..||.||....- ... ....+.++.
T Consensus 111 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~ 188 (297)
T 3b9p_A 111 HMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR--FTKRVYVSL 188 (297)
T ss_dssp HTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHH--CCEEEECCC
T ss_pred HcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhh--CCeEEEeCC
Confidence 456789999999642 11112221 12211 234567777775432 222 235677888
Q ss_pred CChhhHHHHHHHhhcCCCCCChhHHHHHHHHHHHcccc
Q 038521 269 LVHANALKLFTQCAFRRDHLDAGYTALAHKAFSTRTQV 306 (324)
Q Consensus 269 L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 306 (324)
.+.++-..++...+-....+.. .+....+++.+.|.
T Consensus 189 p~~~~r~~il~~~~~~~~~~~~--~~~~~~la~~~~g~ 224 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQGSPLD--TEALRRLAKITDGY 224 (297)
T ss_dssp CCHHHHHHHHHHHHGGGSCCSC--HHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHcCCC
Confidence 8888888888776533221111 12344566666663
No 65
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=32.32 E-value=1.4e+02 Score=28.25 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=45.4
Q ss_pred HHHHHhcCCCcEEEEecCCCH-------------HHHHHHHhcCCC--CCCCCeEEEEcCCchh-----hhhcCCcceEE
Q 038521 206 FQSKRLAREKVLIVFDDVNHP-------------RQIELLIGRLDR--FASGSRVIITARDKQV-----LTNCEIDHIYQ 265 (324)
Q Consensus 206 ~l~~~L~~kr~LlVLDDV~~~-------------~~~~~l~~~~~~--~~~GSrIIiTTR~~~v-----~~~~~~~~~~~ 265 (324)
.+.....++..+|+||+++.. .....|...+.. ...+-+||.||....- .........++
T Consensus 289 ~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~ 368 (489)
T 3hu3_A 289 AFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVD 368 (489)
T ss_dssp HHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEE
T ss_pred HHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEE
Confidence 334444567789999999311 112333332221 1234466667765432 11112345788
Q ss_pred eccCChhhHHHHHHHhhc
Q 038521 266 MKELVHANALKLFTQCAF 283 (324)
Q Consensus 266 v~~L~~~es~~LF~~~af 283 (324)
++..+.++-.+++..++-
T Consensus 369 i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 369 IGIPDATGRLEILQIHTK 386 (489)
T ss_dssp CCCCCHHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHHHh
Confidence 999999999999988763
No 66
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=32.11 E-value=2.4e+02 Score=24.14 Aligned_cols=76 Identities=9% Similarity=0.168 Sum_probs=45.3
Q ss_pred HHHHhcCCCcEEEEecCCCHH----------------HHHHHHhcCCC--CCCCCeEEEEcCCchhhhh--c---CCcce
Q 038521 207 QSKRLAREKVLIVFDDVNHPR----------------QIELLIGRLDR--FASGSRVIITARDKQVLTN--C---EIDHI 263 (324)
Q Consensus 207 l~~~L~~kr~LlVLDDV~~~~----------------~~~~l~~~~~~--~~~GSrIIiTTR~~~v~~~--~---~~~~~ 263 (324)
+.........+|+||++.... ....+...+.. ...+..||.||.....+.. . ..+..
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~ 180 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceE
Confidence 333334567899999997421 12333322221 1235577778865543221 1 23467
Q ss_pred EEeccCChhhHHHHHHHhh
Q 038521 264 YQMKELVHANALKLFTQCA 282 (324)
Q Consensus 264 ~~v~~L~~~es~~LF~~~a 282 (324)
++++..+.++-.+++..+.
T Consensus 181 i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 181 IYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EecCCcCHHHHHHHHHHHH
Confidence 8999999998888887765
No 67
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=27.09 E-value=11 Score=29.54 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=34.4
Q ss_pred CCCcEEEEecCCCHH---------H-HHHHHhcCCCCCCCCeEEEEcCCchhhhhc-------CCcceEEeccCChhhHH
Q 038521 213 REKVLIVFDDVNHPR---------Q-IELLIGRLDRFASGSRVIITARDKQVLTNC-------EIDHIYQMKELVHANAL 275 (324)
Q Consensus 213 ~kr~LlVLDDV~~~~---------~-~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~-------~~~~~~~v~~L~~~es~ 275 (324)
+++.+|+|||+.... . .+.+...+. ..+..+|.||......... ..-..+++++++.++..
T Consensus 114 ~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~ 191 (195)
T 1jbk_A 114 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTI 191 (195)
T ss_dssp TTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHH
T ss_pred CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHH
Confidence 457799999997542 1 222222221 2345677777654422111 11125778888887766
Q ss_pred HHH
Q 038521 276 KLF 278 (324)
Q Consensus 276 ~LF 278 (324)
+++
T Consensus 192 ~il 194 (195)
T 1jbk_A 192 AIL 194 (195)
T ss_dssp TTC
T ss_pred HHh
Confidence 543
No 68
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=27.03 E-value=92 Score=26.71 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHHHHhcCCceEEEeCCCCCcccchHHHHHHHhhcceEEEEEecCccCchhhHHHHHHHHHHHHhcCCeEEeE
Q 038521 34 LFSALFQNNIETFIDNDLKRGDEISESLLGTIEASTISIIIFSEKYASSKWCLDELLKILECKRNYGQIVIPV 106 (324)
Q Consensus 34 L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wcl~El~~i~~~~~~~~~~viPv 106 (324)
|+..+...|.--++|-++..++.+..++.+..+...+- +|.|-+.++.+|-.+||...+......+--|+-+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~k-iI~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKi 175 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVK-VIISNHDFNKTPKKEEIVSRLCRMQELGADLPKI 175 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCE-EEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCE-EEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 34444445544466656666666666666665555544 4567776677777789988877765555334333
No 69
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=25.13 E-value=1.2e+02 Score=27.25 Aligned_cols=57 Identities=18% Similarity=0.203 Sum_probs=31.1
Q ss_pred HHhcCC-CcEEEEecCCC---HHHHHHHHhcCCCCCCCCeEEEEcCCchhhhhcCCcceEEec
Q 038521 209 KRLARE-KVLIVFDDVNH---PRQIELLIGRLDRFASGSRVIITARDKQVLTNCEIDHIYQMK 267 (324)
Q Consensus 209 ~~L~~k-r~LlVLDDV~~---~~~~~~l~~~~~~~~~GSrIIiTTR~~~v~~~~~~~~~~~v~ 267 (324)
+.+.+. .-+++||++.. ...-+.+...+.....+..||+||-+.++... .+.++.+.
T Consensus 299 ~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~--~d~~~~l~ 359 (371)
T 3auy_A 299 NALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDV--ADVIINVK 359 (371)
T ss_dssp HHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGG--CSEEEEEE
T ss_pred HHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhh--CCEEEEEE
Confidence 444566 78999999973 33322222222111223358888887776543 34555554
No 70
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=24.51 E-value=30 Score=27.32 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=21.4
Q ss_pred CCcEEEEecCC--CHHHH--HHHHhcCCC-CCCCCeEEEEcCC
Q 038521 214 EKVLIVFDDVN--HPRQI--ELLIGRLDR-FASGSRVIITARD 251 (324)
Q Consensus 214 kr~LlVLDDV~--~~~~~--~~l~~~~~~-~~~GSrIIiTTR~ 251 (324)
+.-+|||||+. ..+.| +.+...+.. ...|..+|+||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 45689999997 22222 222222211 1357788888864
No 71
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.39 E-value=56 Score=26.57 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=34.0
Q ss_pred EEecCcccc--CCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHHh
Q 038521 17 VFVSFRGED--TRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTIE 66 (324)
Q Consensus 17 vFis~~g~D--~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i~ 66 (324)
.||.|-|.| .+.+-+..|.+.|+.+|+.+..-. .+-|..+.+.+.+.+.
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr-eP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR-EPGGTETGEKIRKILL 51 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-SSCSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE-CCCCCcHHHHHHHHhh
Confidence 389999999 347789999999999999876543 2234455555544443
No 72
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=23.58 E-value=86 Score=26.26 Aligned_cols=71 Identities=11% Similarity=0.243 Sum_probs=41.2
Q ss_pred cCCCcEEEEecCCCHH-----------------HHHHHHhcCCCCC---CCCeEEEEcCCchhhh-----hcCCcceEEe
Q 038521 212 AREKVLIVFDDVNHPR-----------------QIELLIGRLDRFA---SGSRVIITARDKQVLT-----NCEIDHIYQM 266 (324)
Q Consensus 212 ~~kr~LlVLDDV~~~~-----------------~~~~l~~~~~~~~---~GSrIIiTTR~~~v~~-----~~~~~~~~~v 266 (324)
..+..+|+||++.... .+..+...+.... ....||.||.....+. .......+++
T Consensus 101 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i 180 (268)
T 2r62_A 101 KQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLV 180 (268)
T ss_dssp HSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBC
T ss_pred hcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEe
Confidence 4567899999996431 1222333332221 2245777776554321 1113456788
Q ss_pred ccCChhhHHHHHHHhh
Q 038521 267 KELVHANALKLFTQCA 282 (324)
Q Consensus 267 ~~L~~~es~~LF~~~a 282 (324)
+.++.++-.+++..++
T Consensus 181 ~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 181 DKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCCCTTTHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHH
Confidence 8899998888887665
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=22.97 E-value=1.9e+02 Score=22.81 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=35.3
Q ss_pred hcCCCcEEEEecCC-----CHHHHHHHHhcCCCCCCCCeEEEEc---CCchhhhhc-CC--cceEEeccCChhhHH
Q 038521 211 LAREKVLIVFDDVN-----HPRQIELLIGRLDRFASGSRVIITA---RDKQVLTNC-EI--DHIYQMKELVHANAL 275 (324)
Q Consensus 211 L~~kr~LlVLDDV~-----~~~~~~~l~~~~~~~~~GSrIIiTT---R~~~v~~~~-~~--~~~~~v~~L~~~es~ 275 (324)
+..+.-+++||.+. +....+.+...+.. .+..+|++| .+...+..+ .. ..++++...+.++..
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~ 169 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVIL 169 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHH
Confidence 56677799999953 23334445444443 355466776 344444433 21 357887776655443
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=22.37 E-value=2.5e+02 Score=24.04 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=23.1
Q ss_pred CCCeEEEEcCCchhhhh-----cCCcceEEeccCChhhHHHHHHHhhc
Q 038521 241 SGSRVIITARDKQVLTN-----CEIDHIYQMKELVHANALKLFTQCAF 283 (324)
Q Consensus 241 ~GSrIIiTTR~~~v~~~-----~~~~~~~~v~~L~~~es~~LF~~~af 283 (324)
.+-.||.||...+.+.. ...+..+.++ +.++-.+++..+.-
T Consensus 154 ~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P--~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 154 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGVCTGIFR 199 (293)
T ss_dssp CCCCEEEECSSCCC--CHHHHHHHEEEEEECC--CHHHHHHHHHHHHG
T ss_pred CCcEEEEecCCcccCCHHHhCCCCCceeEeCc--CHHHHHHHHHHhcc
Confidence 45678888876543211 1123344443 77888888876653
No 75
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=22.11 E-value=1.6e+02 Score=26.70 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=39.2
Q ss_pred CccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHHH-hhcceEEEE
Q 038521 14 MHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGTI-EASTISIII 74 (324)
Q Consensus 14 ~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~i-~~s~~~i~v 74 (324)
.+||+|---+++ ....+..|.+.|+..|+++.+|+ .+..+...+..|- .+....|+|
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~---~~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEE
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEEC---CCCCHHHHHHHHHhcCCCEEEEE
Confidence 478987655543 34578899999999999999997 2345666666663 345555544
No 76
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=21.27 E-value=1.1e+02 Score=28.67 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=37.0
Q ss_pred CccEEecCcc--ccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHH-HhhcceEEEE
Q 038521 14 MHDVFVSFRG--EDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGT-IEASTISIII 74 (324)
Q Consensus 14 ~~dvFis~~g--~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~-i~~s~~~i~v 74 (324)
.++|+|---+ .+.....+..|++.|+.+|+++.+|+. +..+...+.+| ..+....|+|
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~---~~~~g~k~~~ad~~g~p~~iiv 425 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDT---DQRAGAKFATADLIGIPWQIHV 425 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHTCSEEEEE
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 4788765332 222355788999999999999999982 23455555555 2344444444
No 77
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=21.24 E-value=1.6e+02 Score=26.96 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=37.4
Q ss_pred CccEEecCccccCCCchHHHHHHHHhcCCceEEEeCCCCCcccchHHHHHH-HhhcceEEEE
Q 038521 14 MHDVFVSFRGEDTRDNFTSHLFSALFQNNIETFIDNDLKRGDEISESLLGT-IEASTISIII 74 (324)
Q Consensus 14 ~~dvFis~~g~D~~~~f~~~L~~~L~~~g~~~f~d~~~~~g~~~~~~~~~~-i~~s~~~i~v 74 (324)
.+||+|-.-+++ ....+-.+.+.|+.+|+++-+|+. +..+...+..| ..+....|+|
T Consensus 332 p~~v~v~~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKI-NSSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSC-CHHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChH-HHHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 488986544544 345788999999999999999862 23455555555 3344544444
No 78
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=21.06 E-value=97 Score=30.89 Aligned_cols=66 Identities=15% Similarity=0.304 Sum_probs=39.1
Q ss_pred CcEEEEecCCC--HHHHHHHHhcCCC-----------CCCCCeEEEEcCCc-----------------hhhhhcCCcceE
Q 038521 215 KVLIVFDDVNH--PRQIELLIGRLDR-----------FASGSRVIITARDK-----------------QVLTNCEIDHIY 264 (324)
Q Consensus 215 r~LlVLDDV~~--~~~~~~l~~~~~~-----------~~~GSrIIiTTR~~-----------------~v~~~~~~~~~~ 264 (324)
...|+||++.. .+....|...+.. .....+||.||... .+... .+.++
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i 657 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINR--IDEII 657 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEE
T ss_pred CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhh--CCeEE
Confidence 45899999973 4445555443321 12356888888731 11122 24588
Q ss_pred EeccCChhhHHHHHHHhh
Q 038521 265 QMKELVHANALKLFTQCA 282 (324)
Q Consensus 265 ~v~~L~~~es~~LF~~~a 282 (324)
.+++|+.++-.+++....
T Consensus 658 ~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 658 VFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ECC--CHHHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHH
Confidence 899999988888776654
Done!