Query 038522
Match_columns 590
No_of_seqs 606 out of 2585
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 11:55:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2.1E-90 4.6E-95 735.7 64.8 584 1-587 156-741 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.9E-80 4.2E-85 659.5 63.0 566 1-572 55-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1E-75 2.2E-80 608.6 58.7 493 94-587 85-578 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1E-68 2.2E-73 557.5 60.5 542 16-573 356-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 4.2E-68 9.1E-73 551.7 50.4 464 2-469 92-561 (697)
6 PLN03218 maturation of RBCL 1; 100.0 1.1E-66 2.4E-71 542.2 50.8 494 3-504 376-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.2E-36 1.6E-40 326.6 61.1 549 6-567 304-867 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.2E-35 7E-40 321.5 60.7 551 3-565 335-899 (899)
9 PRK11447 cellulose synthase su 100.0 1.3E-26 2.7E-31 253.4 58.8 547 4-565 69-739 (1157)
10 PRK11447 cellulose synthase su 100.0 5.8E-26 1.3E-30 248.2 58.0 557 4-572 35-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.8E-23 3.9E-28 218.1 55.7 542 8-568 55-708 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.3E-21 2.8E-26 204.3 54.6 543 2-568 83-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 5.5E-21 1.2E-25 177.5 36.8 442 100-555 52-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 1.2E-20 2.6E-25 175.2 29.6 421 135-569 52-488 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 4.6E-19 9.9E-24 182.4 43.5 418 134-566 130-571 (615)
16 KOG2002 TPR-containing nuclear 99.9 1.7E-18 3.6E-23 169.6 44.2 550 8-569 175-801 (1018)
17 PRK11788 tetratricopeptide rep 99.9 1.7E-19 3.7E-24 176.4 30.3 233 337-575 110-356 (389)
18 KOG2002 TPR-containing nuclear 99.9 2.2E-17 4.8E-22 161.9 44.1 548 13-568 146-747 (1018)
19 PRK10049 pgaA outer membrane p 99.9 2.2E-17 4.7E-22 173.0 46.5 390 139-567 23-457 (765)
20 PRK11788 tetratricopeptide rep 99.9 4E-19 8.7E-24 173.8 29.5 293 37-334 42-353 (389)
21 PRK15174 Vi polysaccharide exp 99.9 1.3E-17 2.8E-22 170.9 41.1 367 177-565 16-402 (656)
22 TIGR00990 3a0801s09 mitochondr 99.8 7.9E-17 1.7E-21 165.9 43.1 419 99-537 130-576 (615)
23 PRK15174 Vi polysaccharide exp 99.8 3.1E-17 6.7E-22 168.2 37.5 329 232-569 42-384 (656)
24 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.5E-20 156.8 48.3 441 72-539 41-520 (822)
25 KOG0495 HAT repeat protein [RN 99.8 2.8E-14 6E-19 134.3 51.5 471 102-586 412-898 (913)
26 KOG4422 Uncharacterized conser 99.8 4E-16 8.6E-21 139.3 37.3 421 30-497 116-587 (625)
27 PRK14574 hmsH outer membrane p 99.8 3.4E-15 7.4E-20 153.4 49.3 434 106-568 44-515 (822)
28 PRK10049 pgaA outer membrane p 99.8 3.7E-16 8E-21 163.9 39.8 405 62-541 12-465 (765)
29 KOG2003 TPR repeat-containing 99.8 5.2E-17 1.1E-21 145.8 28.1 480 32-552 203-709 (840)
30 KOG4422 Uncharacterized conser 99.8 1.9E-14 4.2E-19 128.7 38.6 418 96-533 116-591 (625)
31 KOG2076 RNA polymerase III tra 99.8 7.1E-14 1.5E-18 136.8 43.7 559 8-568 150-851 (895)
32 KOG2076 RNA polymerase III tra 99.8 3.6E-13 7.8E-18 131.9 44.9 531 33-568 142-771 (895)
33 KOG0495 HAT repeat protein [RN 99.7 3.1E-12 6.7E-17 120.8 48.3 486 43-547 389-895 (913)
34 KOG1915 Cell cycle control pro 99.7 8.9E-12 1.9E-16 113.4 44.1 459 62-565 70-584 (677)
35 KOG1915 Cell cycle control pro 99.7 8.5E-12 1.8E-16 113.5 40.5 482 11-563 87-622 (677)
36 KOG4318 Bicoid mRNA stability 99.7 9.1E-13 2E-17 128.6 34.9 533 24-582 19-611 (1088)
37 KOG0547 Translocase of outer m 99.7 1.2E-12 2.6E-17 119.5 32.9 212 347-564 339-564 (606)
38 PF13429 TPR_15: Tetratricopep 99.7 4.8E-16 1E-20 143.8 11.0 218 343-565 53-276 (280)
39 KOG2003 TPR repeat-containing 99.6 6.8E-13 1.5E-17 119.8 28.3 447 102-566 207-689 (840)
40 KOG1173 Anaphase-promoting com 99.6 6E-12 1.3E-16 117.2 31.7 479 30-565 16-517 (611)
41 PRK10747 putative protoheme IX 99.6 1.8E-12 3.8E-17 125.5 28.7 245 310-565 130-389 (398)
42 PRK10747 putative protoheme IX 99.6 1.2E-12 2.6E-17 126.7 27.1 276 43-327 97-389 (398)
43 KOG2047 mRNA splicing factor [ 99.6 2.7E-09 5.8E-14 101.3 46.7 523 28-560 100-717 (835)
44 KOG1126 DNA-binding cell divis 99.6 8.4E-13 1.8E-17 125.4 23.4 276 283-569 335-623 (638)
45 KOG1155 Anaphase-promoting com 99.6 7.1E-11 1.5E-15 107.4 33.8 246 315-565 243-494 (559)
46 PF13429 TPR_15: Tetratricopep 99.6 4.4E-14 9.5E-19 130.7 12.8 252 3-258 14-274 (280)
47 KOG1155 Anaphase-promoting com 99.6 9E-11 2E-15 106.8 33.2 321 162-497 160-492 (559)
48 TIGR00540 hemY_coli hemY prote 99.5 4.4E-12 9.5E-17 123.5 26.4 278 42-326 96-397 (409)
49 KOG4318 Bicoid mRNA stability 99.5 3E-11 6.4E-16 118.3 30.6 483 51-565 11-556 (1088)
50 KOG1126 DNA-binding cell divis 99.5 1.8E-12 3.9E-17 123.2 20.9 248 315-568 335-588 (638)
51 TIGR00540 hemY_coli hemY prote 99.5 3.9E-11 8.4E-16 116.9 31.0 290 209-531 96-398 (409)
52 KOG3785 Uncharacterized conser 99.5 2.1E-10 4.6E-15 100.7 30.7 445 37-534 29-492 (557)
53 COG2956 Predicted N-acetylgluc 99.5 7.3E-11 1.6E-15 102.4 27.0 120 208-329 46-171 (389)
54 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.7E-15 102.7 30.6 285 210-530 97-388 (400)
55 KOG0547 Translocase of outer m 99.5 1.9E-10 4.1E-15 105.4 29.8 337 5-363 123-491 (606)
56 TIGR02521 type_IV_pilW type IV 99.5 2.2E-11 4.8E-16 110.1 22.3 198 368-566 30-232 (234)
57 COG3071 HemY Uncharacterized e 99.5 3.4E-10 7.4E-15 101.5 28.5 219 339-565 158-389 (400)
58 KOG4162 Predicted calmodulin-b 99.4 9.7E-09 2.1E-13 99.8 38.8 127 438-566 653-783 (799)
59 KOG1174 Anaphase-promoting com 99.4 7.6E-09 1.6E-13 93.1 34.7 307 229-542 191-510 (564)
60 KOG2047 mRNA splicing factor [ 99.4 7.5E-08 1.6E-12 91.8 42.9 539 15-565 44-686 (835)
61 KOG2376 Signal recognition par 99.4 3E-08 6.6E-13 93.5 38.3 435 103-561 19-515 (652)
62 KOG1156 N-terminal acetyltrans 99.4 2.1E-07 4.6E-12 89.0 44.1 548 9-570 53-692 (700)
63 COG2956 Predicted N-acetylgluc 99.4 1.9E-09 4E-14 93.9 25.9 303 277-585 45-366 (389)
64 KOG0985 Vesicle coat protein c 99.4 3.5E-07 7.7E-12 91.6 44.5 144 399-563 1103-1246(1666)
65 KOG1840 Kinesin light chain [C 99.3 3E-09 6.5E-14 102.6 29.0 172 369-565 283-478 (508)
66 KOG1173 Anaphase-promoting com 99.3 3.1E-08 6.8E-13 93.0 34.2 488 7-545 26-531 (611)
67 KOG1129 TPR repeat-containing 99.3 1.4E-10 3.1E-15 100.7 17.3 210 368-580 255-473 (478)
68 PF12569 NARP1: NMDA receptor- 99.3 3.3E-08 7.2E-13 96.8 35.3 267 5-296 12-291 (517)
69 PF13041 PPR_2: PPR repeat fam 99.3 4.8E-12 1.1E-16 81.4 6.0 50 94-143 1-50 (50)
70 KOG3785 Uncharacterized conser 99.3 9.3E-08 2E-12 84.5 33.9 196 373-573 289-497 (557)
71 KOG0985 Vesicle coat protein c 99.3 1.9E-07 4.1E-12 93.4 39.8 238 298-565 1104-1369(1666)
72 KOG2376 Signal recognition par 99.3 2.5E-07 5.4E-12 87.6 37.8 116 5-126 20-140 (652)
73 PRK12370 invasion protein regu 99.3 2.5E-09 5.4E-14 108.5 27.0 243 315-567 277-536 (553)
74 KOG1156 N-terminal acetyltrans 99.3 2.9E-07 6.3E-12 88.1 38.1 448 8-463 18-510 (700)
75 PF13041 PPR_2: PPR repeat fam 99.3 1.1E-11 2.5E-16 79.7 6.1 50 195-244 1-50 (50)
76 PF12569 NARP1: NMDA receptor- 99.3 2.3E-07 5E-12 91.0 37.5 45 518-562 472-516 (517)
77 PRK11189 lipoprotein NlpI; Pro 99.2 8.9E-10 1.9E-14 102.0 18.9 88 373-462 68-159 (296)
78 PRK12370 invasion protein regu 99.2 2.7E-09 5.9E-14 108.2 23.5 211 347-565 274-501 (553)
79 TIGR02521 type_IV_pilW type IV 99.2 5E-09 1.1E-13 94.6 23.0 192 340-534 37-234 (234)
80 COG3063 PilF Tfp pilus assembl 99.2 1.8E-09 4E-14 89.6 17.6 161 403-568 38-204 (250)
81 KOG4162 Predicted calmodulin-b 99.2 1.4E-07 3E-12 92.1 32.5 500 7-538 237-789 (799)
82 KOG3616 Selective LIM binding 99.2 2.6E-07 5.5E-12 89.5 32.8 337 172-562 621-962 (1636)
83 KOG1129 TPR repeat-containing 99.1 1.4E-09 3E-14 94.7 14.4 231 271-540 227-466 (478)
84 KOG1840 Kinesin light chain [C 99.1 1.3E-07 2.8E-12 91.5 27.4 237 167-463 200-478 (508)
85 KOG3617 WD40 and TPR repeat-co 99.1 7.5E-07 1.6E-11 87.4 32.0 241 62-326 723-994 (1416)
86 KOG3616 Selective LIM binding 99.1 1.1E-06 2.5E-11 85.2 32.7 254 36-325 563-817 (1636)
87 KOG1174 Anaphase-promoting com 99.1 9.2E-06 2E-10 73.8 35.4 263 231-502 231-503 (564)
88 PRK11189 lipoprotein NlpI; Pro 99.0 1.3E-07 2.8E-12 87.7 24.2 228 315-550 42-284 (296)
89 PF04733 Coatomer_E: Coatomer 99.0 1.9E-08 4.2E-13 91.6 17.5 147 410-566 112-265 (290)
90 KOG1125 TPR repeat-containing 99.0 9.5E-09 2.1E-13 96.8 15.5 215 345-565 296-526 (579)
91 KOG0548 Molecular co-chaperone 99.0 4.8E-07 1E-11 84.8 25.9 399 139-567 10-456 (539)
92 KOG1127 TPR repeat-containing 99.0 4.6E-06 1E-10 84.0 33.8 275 285-565 801-1103(1238)
93 COG3063 PilF Tfp pilus assembl 99.0 1.7E-07 3.6E-12 78.2 19.8 191 373-565 39-235 (250)
94 PF04733 Coatomer_E: Coatomer 99.0 2.7E-08 5.9E-13 90.7 16.8 157 375-538 108-271 (290)
95 KOG0548 Molecular co-chaperone 99.0 4.6E-07 9.9E-12 85.0 24.2 177 375-560 304-483 (539)
96 PRK04841 transcriptional regul 99.0 9.2E-05 2E-09 81.4 45.8 155 171-326 346-518 (903)
97 KOG4340 Uncharacterized conser 98.9 3.3E-06 7.1E-11 73.2 26.5 190 68-263 13-209 (459)
98 KOG4340 Uncharacterized conser 98.9 1.9E-06 4E-11 74.7 24.2 417 125-565 4-442 (459)
99 KOG0624 dsRNA-activated protei 98.9 1.9E-06 4.1E-11 76.2 24.3 313 200-542 41-380 (504)
100 TIGR03302 OM_YfiO outer membra 98.9 1.6E-07 3.6E-12 84.5 17.9 180 368-567 32-233 (235)
101 cd05804 StaR_like StaR_like; a 98.9 7.8E-06 1.7E-10 79.0 30.3 197 370-566 115-336 (355)
102 KOG1127 TPR repeat-containing 98.9 3.5E-05 7.6E-10 77.9 34.3 345 75-426 572-993 (1238)
103 PRK10370 formate-dependent nit 98.8 8E-08 1.7E-12 82.7 13.8 127 448-576 52-183 (198)
104 KOG1128 Uncharacterized conser 98.8 6.8E-08 1.5E-12 93.6 14.4 210 364-588 393-605 (777)
105 KOG0624 dsRNA-activated protei 98.8 3.2E-05 6.8E-10 68.7 29.4 357 166-565 38-420 (504)
106 PRK15359 type III secretion sy 98.8 1.2E-07 2.6E-12 77.1 13.1 92 476-567 29-122 (144)
107 KOG3617 WD40 and TPR repeat-co 98.8 0.00022 4.7E-09 70.9 38.6 140 5-156 736-883 (1416)
108 COG5010 TadD Flp pilus assembl 98.7 2.4E-07 5.1E-12 79.1 12.8 152 406-560 72-225 (257)
109 PRK15179 Vi polysaccharide bio 98.7 1.2E-06 2.6E-11 89.5 19.9 131 432-565 83-216 (694)
110 cd05804 StaR_like StaR_like; a 98.7 2.3E-05 4.9E-10 75.8 27.8 152 39-192 52-212 (355)
111 KOG1070 rRNA processing protei 98.7 2E-06 4.3E-11 89.5 20.5 199 368-570 1457-1667(1710)
112 PRK15359 type III secretion sy 98.7 4.6E-07 9.9E-12 73.7 12.4 123 420-549 13-138 (144)
113 PRK04841 transcriptional regul 98.6 0.00039 8.4E-09 76.5 37.2 259 205-464 460-760 (903)
114 COG4783 Putative Zn-dependent 98.6 1.8E-05 3.9E-10 73.9 21.6 136 409-566 315-454 (484)
115 PF12854 PPR_1: PPR repeat 98.6 7.7E-08 1.7E-12 55.2 4.1 33 161-193 2-34 (34)
116 TIGR02552 LcrH_SycD type III s 98.6 9.2E-07 2E-11 71.7 12.0 97 471-567 17-115 (135)
117 PF12854 PPR_1: PPR repeat 98.6 7.8E-08 1.7E-12 55.2 3.6 33 60-92 2-34 (34)
118 PLN02789 farnesyltranstransfer 98.6 5.3E-05 1.1E-09 70.3 24.1 185 376-564 78-300 (320)
119 PRK15363 pathogenicity island 98.6 2.6E-06 5.6E-11 67.8 13.2 97 471-567 35-133 (157)
120 TIGR03302 OM_YfiO outer membra 98.5 4.9E-06 1.1E-10 74.9 16.6 183 331-534 30-234 (235)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 2.7E-06 5.9E-11 80.2 15.1 123 437-564 171-295 (395)
122 PRK10370 formate-dependent nit 98.5 1.3E-05 2.8E-10 69.1 18.1 155 375-541 22-182 (198)
123 KOG1128 Uncharacterized conser 98.5 6.8E-06 1.5E-10 80.2 17.4 211 338-566 402-616 (777)
124 PRK14720 transcript cleavage f 98.5 3.1E-05 6.7E-10 80.2 23.1 148 371-548 118-268 (906)
125 KOG3081 Vesicle coat complex C 98.5 0.00013 2.7E-09 62.8 22.1 155 375-536 114-275 (299)
126 COG5010 TadD Flp pilus assembl 98.5 2.8E-05 6.1E-10 66.7 18.3 152 373-528 70-227 (257)
127 KOG1070 rRNA processing protei 98.5 5.2E-05 1.1E-09 79.5 23.3 227 333-560 1457-1694(1710)
128 PLN02789 farnesyltranstransfer 98.5 1.7E-05 3.6E-10 73.6 18.2 191 375-569 43-253 (320)
129 KOG3060 Uncharacterized conser 98.5 3.1E-05 6.8E-10 65.8 17.7 191 348-541 26-229 (289)
130 KOG1125 TPR repeat-containing 98.4 5.4E-05 1.2E-09 72.2 20.5 83 243-327 296-381 (579)
131 COG4783 Putative Zn-dependent 98.4 7.1E-05 1.5E-09 70.1 20.4 120 444-565 315-436 (484)
132 KOG2053 Mitochondrial inherita 98.4 0.0036 7.9E-08 63.4 40.6 217 8-227 20-256 (932)
133 KOG1914 mRNA cleavage and poly 98.4 0.0026 5.6E-08 60.6 34.2 76 62-140 17-95 (656)
134 KOG3081 Vesicle coat complex C 98.4 0.00015 3.3E-09 62.3 19.4 167 322-497 96-268 (299)
135 KOG1914 mRNA cleavage and poly 98.3 0.0031 6.7E-08 60.1 38.2 450 24-497 14-536 (656)
136 PF09976 TPR_21: Tetratricopep 98.3 2.8E-05 6E-10 63.6 14.1 124 438-563 15-144 (145)
137 TIGR02552 LcrH_SycD type III s 98.3 2.2E-05 4.8E-10 63.6 13.1 115 422-540 5-122 (135)
138 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.3E-05 2.9E-10 63.2 10.7 95 474-568 5-107 (119)
139 PF12895 Apc3: Anaphase-promot 98.2 1.5E-06 3.2E-11 63.4 4.5 78 484-562 2-83 (84)
140 KOG3060 Uncharacterized conser 98.2 0.00057 1.2E-08 58.5 19.8 182 315-501 28-222 (289)
141 cd00189 TPR Tetratricopeptide 98.2 1.4E-05 3.1E-10 60.1 10.0 94 474-567 3-98 (100)
142 PF13432 TPR_16: Tetratricopep 98.2 3.7E-06 7.9E-11 57.8 5.9 60 509-568 3-62 (65)
143 PF13414 TPR_11: TPR repeat; P 98.2 2.6E-06 5.7E-11 59.4 5.2 66 502-567 2-68 (69)
144 PRK15179 Vi polysaccharide bio 98.2 0.00035 7.5E-09 71.9 22.1 139 399-542 85-227 (694)
145 KOG2053 Mitochondrial inherita 98.2 0.011 2.3E-07 60.2 42.7 504 41-564 20-606 (932)
146 PF09976 TPR_21: Tetratricopep 98.2 9.3E-05 2E-09 60.5 14.6 125 403-530 15-145 (145)
147 PRK14720 transcript cleavage f 98.2 0.0033 7.1E-08 65.7 28.0 81 336-429 118-198 (906)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.2E-05 1.8E-09 70.5 15.2 127 370-500 170-297 (395)
149 TIGR00756 PPR pentatricopeptid 98.2 3.9E-06 8.5E-11 49.2 4.3 34 97-130 1-34 (35)
150 PF13812 PPR_3: Pentatricopept 98.1 4.5E-06 9.7E-11 48.5 4.2 33 97-129 2-34 (34)
151 TIGR00756 PPR pentatricopeptid 98.1 5.9E-06 1.3E-10 48.4 4.2 33 199-231 2-34 (35)
152 COG4235 Cytochrome c biogenesi 98.1 3.2E-05 7E-10 68.2 10.4 113 468-580 153-270 (287)
153 COG4700 Uncharacterized protei 98.1 0.00049 1.1E-08 55.8 15.8 133 431-565 85-221 (251)
154 TIGR02795 tol_pal_ybgF tol-pal 98.1 7.4E-05 1.6E-09 58.9 11.7 106 437-542 4-115 (119)
155 PLN03088 SGT1, suppressor of 98.1 1.8E-05 4E-10 75.2 9.0 107 441-550 8-117 (356)
156 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 46.9 4.3 33 401-433 2-34 (34)
157 PRK02603 photosystem I assembl 98.0 6.9E-05 1.5E-09 63.4 10.9 96 472-567 36-150 (172)
158 KOG0553 TPR repeat-containing 98.0 2.1E-05 4.6E-10 68.8 7.6 109 443-554 89-200 (304)
159 PF07079 DUF1347: Protein of u 98.0 0.015 3.3E-07 54.4 35.7 119 385-508 396-530 (549)
160 CHL00033 ycf3 photosystem I as 97.9 8.7E-05 1.9E-09 62.6 10.2 93 471-563 35-139 (168)
161 PF13371 TPR_9: Tetratricopept 97.9 2.8E-05 6.1E-10 54.8 6.0 60 510-569 2-61 (73)
162 PF14559 TPR_19: Tetratricopep 97.9 1.2E-05 2.5E-10 55.9 3.9 55 514-568 2-56 (68)
163 PF07079 DUF1347: Protein of u 97.9 0.02 4.3E-07 53.7 35.0 116 445-564 389-522 (549)
164 KOG0553 TPR repeat-containing 97.9 0.00014 2.9E-09 64.0 10.5 109 407-520 88-200 (304)
165 PRK02603 photosystem I assembl 97.8 0.00068 1.5E-08 57.4 14.0 127 402-552 37-166 (172)
166 PRK15331 chaperone protein Sic 97.8 0.00044 9.6E-09 55.6 11.7 90 476-565 42-133 (165)
167 KOG0550 Molecular chaperone (D 97.8 0.00095 2.1E-08 61.3 14.9 159 408-572 177-356 (486)
168 PLN03088 SGT1, suppressor of 97.8 0.00038 8.3E-09 66.3 13.1 101 406-511 8-111 (356)
169 PF08579 RPM2: Mitochondrial r 97.8 0.00039 8.4E-09 51.4 9.3 79 100-178 29-116 (120)
170 PF13432 TPR_16: Tetratricopep 97.8 7.4E-05 1.6E-09 51.2 5.5 61 477-537 3-65 (65)
171 PRK10153 DNA-binding transcrip 97.8 0.0013 2.8E-08 65.6 16.3 139 398-538 335-488 (517)
172 PF01535 PPR: PPR repeat; Int 97.7 4.4E-05 9.4E-10 43.1 3.5 31 97-127 1-31 (31)
173 cd00189 TPR Tetratricopeptide 97.7 0.0004 8.7E-09 51.9 10.1 92 441-534 6-99 (100)
174 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.2E-09 53.6 6.2 80 413-496 2-83 (84)
175 PF04840 Vps16_C: Vps16, C-ter 97.7 0.039 8.5E-07 51.3 29.2 105 375-496 183-287 (319)
176 PRK10153 DNA-binding transcrip 97.7 0.0017 3.7E-08 64.8 16.1 136 430-569 332-485 (517)
177 PF13431 TPR_17: Tetratricopep 97.7 3.3E-05 7.1E-10 44.3 2.2 33 526-558 2-34 (34)
178 PF01535 PPR: PPR repeat; Int 97.7 6.5E-05 1.4E-09 42.3 3.4 31 401-431 1-31 (31)
179 PF10037 MRP-S27: Mitochondria 97.6 0.00069 1.5E-08 64.6 12.0 119 162-280 62-186 (429)
180 KOG2280 Vacuolar assembly/sort 97.6 0.085 1.9E-06 52.9 26.2 336 125-494 426-793 (829)
181 PRK10803 tol-pal system protei 97.6 0.00044 9.5E-09 62.2 9.9 61 505-565 182-245 (263)
182 PF12688 TPR_5: Tetratrico pep 97.6 0.0012 2.5E-08 51.1 10.7 88 477-564 7-102 (120)
183 PF14559 TPR_19: Tetratricopep 97.6 9.7E-05 2.1E-09 51.2 4.4 58 483-540 3-62 (68)
184 PF10037 MRP-S27: Mitochondria 97.6 0.00073 1.6E-08 64.4 11.5 119 61-179 62-186 (429)
185 PF08579 RPM2: Mitochondrial r 97.6 0.001 2.3E-08 49.2 9.6 79 201-279 29-116 (120)
186 COG3898 Uncharacterized membra 97.6 0.063 1.4E-06 49.5 28.2 273 280-567 97-393 (531)
187 COG4700 Uncharacterized protei 97.6 0.0025 5.4E-08 51.8 12.2 102 466-567 84-190 (251)
188 PRK10866 outer membrane biogen 97.6 0.015 3.3E-07 52.0 18.7 171 375-564 38-239 (243)
189 PF14938 SNAP: Soluble NSF att 97.5 0.015 3.4E-07 53.6 19.0 96 439-534 118-227 (282)
190 PF04840 Vps16_C: Vps16, C-ter 97.5 0.079 1.7E-06 49.3 24.8 109 437-562 179-287 (319)
191 KOG2796 Uncharacterized conser 97.5 0.0053 1.1E-07 52.9 14.1 130 404-534 181-317 (366)
192 PF05843 Suf: Suppressor of fo 97.5 0.0025 5.4E-08 58.5 13.5 131 402-535 3-139 (280)
193 CHL00033 ycf3 photosystem I as 97.5 0.0028 6.1E-08 53.4 12.9 98 439-536 39-153 (168)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0005 1.1E-08 64.9 8.0 62 504-565 76-140 (453)
195 PF05843 Suf: Suppressor of fo 97.4 0.0027 5.9E-08 58.3 12.4 129 436-566 2-136 (280)
196 PF13414 TPR_11: TPR repeat; P 97.4 0.00038 8.1E-09 48.3 5.3 65 470-534 2-69 (69)
197 PF14938 SNAP: Soluble NSF att 97.4 0.016 3.4E-07 53.6 17.3 150 372-534 97-268 (282)
198 COG3898 Uncharacterized membra 97.4 0.061 1.3E-06 49.5 19.8 276 10-294 97-390 (531)
199 PF13281 DUF4071: Domain of un 97.4 0.065 1.4E-06 50.3 20.7 159 374-535 146-337 (374)
200 PF13428 TPR_14: Tetratricopep 97.4 0.00026 5.6E-09 43.7 3.5 42 504-545 2-43 (44)
201 PRK15363 pathogenicity island 97.3 0.00087 1.9E-08 53.7 6.9 94 31-125 36-132 (157)
202 PRK10803 tol-pal system protei 97.3 0.0047 1E-07 55.6 12.3 102 437-538 145-252 (263)
203 KOG1538 Uncharacterized conser 97.3 0.055 1.2E-06 53.1 19.7 56 134-192 601-658 (1081)
204 KOG1130 Predicted G-alpha GTPa 97.3 0.0028 6.1E-08 58.2 10.5 129 437-565 197-343 (639)
205 PF06239 ECSIT: Evolutionarily 97.3 0.002 4.4E-08 54.2 8.7 88 94-181 45-153 (228)
206 PF06239 ECSIT: Evolutionarily 97.2 0.0033 7.1E-08 53.0 9.8 97 186-282 34-153 (228)
207 PRK10866 outer membrane biogen 97.2 0.026 5.6E-07 50.5 15.4 176 29-224 31-239 (243)
208 KOG1538 Uncharacterized conser 97.1 0.06 1.3E-06 52.8 18.1 68 315-394 616-683 (1081)
209 PF13371 TPR_9: Tetratricopept 97.1 0.0019 4.2E-08 45.3 6.1 64 479-542 3-68 (73)
210 KOG1258 mRNA processing protei 97.0 0.37 8.1E-06 47.4 34.0 182 367-551 295-489 (577)
211 PF13512 TPR_18: Tetratricopep 97.0 0.018 4E-07 45.4 11.5 89 480-568 19-130 (142)
212 PF12688 TPR_5: Tetratrico pep 97.0 0.022 4.9E-07 44.0 11.7 92 406-497 7-101 (120)
213 PF13424 TPR_12: Tetratricopep 97.0 0.00093 2E-08 47.7 3.9 62 504-565 6-74 (78)
214 COG4235 Cytochrome c biogenesi 97.0 0.029 6.3E-07 50.1 13.5 102 433-536 154-260 (287)
215 KOG2041 WD40 repeat protein [G 96.9 0.53 1.1E-05 47.1 26.4 152 145-325 748-904 (1189)
216 KOG2041 WD40 repeat protein [G 96.9 0.56 1.2E-05 46.9 26.3 19 409-427 932-950 (1189)
217 PRK11906 transcriptional regul 96.9 0.02 4.3E-07 54.6 12.5 143 416-561 274-431 (458)
218 KOG2796 Uncharacterized conser 96.8 0.044 9.6E-07 47.5 13.0 127 100-226 181-315 (366)
219 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.47 1E-05 44.9 29.1 78 62-141 39-119 (660)
220 PF09205 DUF1955: Domain of un 96.8 0.11 2.3E-06 40.0 13.3 140 411-569 13-152 (161)
221 KOG0550 Molecular chaperone (D 96.8 0.48 1E-05 44.4 21.7 50 38-88 57-106 (486)
222 KOG0543 FKBP-type peptidyl-pro 96.7 0.022 4.7E-07 52.9 11.3 94 472-565 258-354 (397)
223 PF13525 YfiO: Outer membrane 96.7 0.14 3E-06 44.5 15.7 53 7-59 15-71 (203)
224 PF03704 BTAD: Bacterial trans 96.7 0.0061 1.3E-07 49.9 6.7 69 505-573 64-137 (146)
225 PF13525 YfiO: Outer membrane 96.6 0.072 1.6E-06 46.4 13.6 51 517-567 104-171 (203)
226 KOG1130 Predicted G-alpha GTPa 96.6 0.013 2.9E-07 54.0 9.0 129 402-530 197-342 (639)
227 KOG2114 Vacuolar assembly/sort 96.6 1 2.3E-05 46.2 25.0 55 373-427 709-763 (933)
228 KOG4555 TPR repeat-containing 96.6 0.024 5.2E-07 43.3 8.7 88 480-567 52-145 (175)
229 PF13424 TPR_12: Tetratricopep 96.5 0.0037 8.1E-08 44.5 4.2 59 473-531 7-74 (78)
230 KOG0543 FKBP-type peptidyl-pro 96.5 0.011 2.5E-07 54.7 7.9 66 504-569 258-323 (397)
231 PF12921 ATP13: Mitochondrial 96.5 0.038 8.3E-07 43.2 9.7 98 369-482 2-99 (126)
232 PF13281 DUF4071: Domain of un 96.5 0.76 1.6E-05 43.4 19.5 163 403-566 144-334 (374)
233 COG1729 Uncharacterized protei 96.4 0.028 6E-07 49.5 9.2 99 437-536 144-248 (262)
234 PRK11619 lytic murein transgly 96.3 1.6 3.5E-05 45.3 29.1 116 413-531 254-374 (644)
235 COG4105 ComL DNA uptake lipopr 96.3 0.24 5.1E-06 43.4 14.2 54 8-61 45-102 (254)
236 COG1729 Uncharacterized protei 96.2 0.052 1.1E-06 47.9 9.9 92 403-497 145-241 (262)
237 KOG1585 Protein required for f 96.1 0.75 1.6E-05 39.8 15.9 88 473-561 152-251 (308)
238 KOG2280 Vacuolar assembly/sort 96.1 1.8 4E-05 43.9 32.8 113 433-561 682-794 (829)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.045 9.7E-07 52.2 9.6 62 471-532 75-141 (453)
240 PF10300 DUF3808: Protein of u 96.1 0.29 6.4E-06 48.7 15.9 159 404-565 192-375 (468)
241 COG4105 ComL DNA uptake lipopr 96.1 0.92 2E-05 39.9 18.6 57 509-565 173-232 (254)
242 COG0457 NrfG FOG: TPR repeat [ 96.1 1 2.2E-05 40.2 26.1 194 370-565 60-264 (291)
243 KOG2610 Uncharacterized conser 96.0 0.092 2E-06 47.3 10.6 160 411-573 114-283 (491)
244 KOG2114 Vacuolar assembly/sort 96.0 2.3 5E-05 43.9 26.6 146 67-219 336-485 (933)
245 KOG2610 Uncharacterized conser 95.9 0.25 5.5E-06 44.7 12.9 157 381-541 115-287 (491)
246 COG3118 Thioredoxin domain-con 95.9 0.51 1.1E-05 42.3 14.5 120 444-566 143-265 (304)
247 smart00299 CLH Clathrin heavy 95.8 0.72 1.6E-05 37.3 14.7 126 403-548 10-136 (140)
248 KOG3941 Intermediate in Toll s 95.8 0.08 1.7E-06 46.5 8.9 109 85-193 54-186 (406)
249 PF03704 BTAD: Bacterial trans 95.7 0.07 1.5E-06 43.6 8.4 56 405-461 67-122 (146)
250 PRK15331 chaperone protein Sic 95.7 0.034 7.4E-07 45.0 6.1 90 34-124 41-133 (165)
251 PF13512 TPR_18: Tetratricopep 95.7 0.39 8.4E-06 38.1 11.7 20 519-538 115-134 (142)
252 COG4649 Uncharacterized protei 95.6 0.44 9.5E-06 38.8 11.8 51 515-565 144-195 (221)
253 KOG3941 Intermediate in Toll s 95.6 0.21 4.5E-06 44.0 10.7 125 18-158 55-186 (406)
254 PF04184 ST7: ST7 protein; In 95.6 0.28 6.1E-06 47.2 12.5 57 507-563 263-321 (539)
255 KOG4555 TPR repeat-containing 95.6 0.037 7.9E-07 42.3 5.4 59 511-569 51-110 (175)
256 COG5107 RNA14 Pre-mRNA 3'-end 95.4 2.5 5.5E-05 40.3 33.7 466 15-513 27-545 (660)
257 PF12921 ATP13: Mitochondrial 95.4 0.28 6E-06 38.5 10.2 76 436-511 3-96 (126)
258 PF04184 ST7: ST7 protein; In 95.4 1.2 2.7E-05 43.0 16.0 97 439-535 263-378 (539)
259 PF02259 FAT: FAT domain; Int 95.4 2.7 5.9E-05 40.4 19.7 149 399-550 145-305 (352)
260 PF07719 TPR_2: Tetratricopept 95.4 0.028 6E-07 32.1 3.5 29 506-534 4-32 (34)
261 PRK11906 transcriptional regul 95.3 1 2.2E-05 43.4 15.4 146 384-534 273-438 (458)
262 PF00515 TPR_1: Tetratricopept 95.3 0.022 4.8E-07 32.5 2.9 30 505-534 3-32 (34)
263 PF04053 Coatomer_WDAD: Coatom 95.2 0.65 1.4E-05 45.6 14.3 157 104-292 269-427 (443)
264 COG3118 Thioredoxin domain-con 95.2 1.6 3.4E-05 39.3 15.1 167 387-555 121-290 (304)
265 KOG1941 Acetylcholine receptor 95.0 0.43 9.4E-06 43.7 11.2 222 309-531 17-274 (518)
266 KOG2396 HAT (Half-A-TPR) repea 95.0 3.8 8.2E-05 39.8 31.7 79 14-93 88-168 (568)
267 KOG4234 TPR repeat-containing 94.9 0.17 3.7E-06 42.1 7.9 101 443-545 103-210 (271)
268 KOG1941 Acetylcholine receptor 94.8 3.4 7.4E-05 38.2 17.2 54 444-497 215-272 (518)
269 PF04053 Coatomer_WDAD: Coatom 94.8 0.46 9.9E-06 46.6 11.8 156 378-563 270-428 (443)
270 COG0457 NrfG FOG: TPR repeat [ 94.7 2.9 6.2E-05 37.1 25.8 197 335-535 60-268 (291)
271 PF13428 TPR_14: Tetratricopep 94.7 0.063 1.4E-06 32.9 3.9 33 537-569 1-33 (44)
272 PF09205 DUF1955: Domain of un 94.7 1.6 3.4E-05 33.9 13.0 64 199-263 88-151 (161)
273 PF13176 TPR_7: Tetratricopept 94.6 0.069 1.5E-06 31.0 3.7 26 539-564 1-26 (36)
274 PRK09687 putative lyase; Provi 94.6 3.7 8E-05 37.7 26.0 73 368-445 205-277 (280)
275 PF07035 Mic1: Colon cancer-as 94.5 2.3 4.9E-05 35.1 13.5 134 116-261 14-149 (167)
276 PF10300 DUF3808: Protein of u 94.4 0.53 1.1E-05 46.9 11.7 143 420-566 177-334 (468)
277 KOG2066 Vacuolar assembly/sort 94.3 7.4 0.00016 40.1 24.5 71 441-523 640-710 (846)
278 PF08631 SPO22: Meiosis protei 94.1 4.9 0.00011 37.1 25.4 22 375-396 127-148 (278)
279 KOG0890 Protein kinase of the 94.0 16 0.00035 43.0 29.3 64 503-568 1670-1733(2382)
280 COG3629 DnrI DNA-binding trans 94.0 0.24 5.3E-06 44.5 7.5 60 472-531 154-215 (280)
281 PF02259 FAT: FAT domain; Int 94.0 2.9 6.3E-05 40.2 15.9 68 501-568 144-215 (352)
282 smart00299 CLH Clathrin heavy 94.0 2.7 5.9E-05 33.9 14.7 87 32-122 9-95 (140)
283 PF07719 TPR_2: Tetratricopept 94.0 0.097 2.1E-06 29.7 3.5 31 538-568 2-32 (34)
284 KOG1920 IkappaB kinase complex 93.8 4.6 0.0001 43.6 17.1 12 315-326 867-878 (1265)
285 PF00515 TPR_1: Tetratricopept 93.4 0.14 3E-06 29.1 3.5 31 538-568 2-32 (34)
286 PF09613 HrpB1_HrpK: Bacterial 93.4 3.4 7.4E-05 33.7 12.3 65 447-514 22-88 (160)
287 COG2976 Uncharacterized protei 93.4 1.2 2.5E-05 37.3 9.8 23 511-533 167-189 (207)
288 PF09613 HrpB1_HrpK: Bacterial 93.4 0.52 1.1E-05 38.2 7.6 83 471-553 7-94 (160)
289 KOG1585 Protein required for f 93.1 3.3 7.1E-05 36.1 12.2 174 372-566 34-219 (308)
290 KOG1920 IkappaB kinase complex 93.0 16 0.00035 39.9 24.4 52 180-242 894-945 (1265)
291 COG4785 NlpI Lipoprotein NlpI, 93.0 5.3 0.00012 34.2 14.4 160 400-568 99-268 (297)
292 TIGR02561 HrpB1_HrpK type III 92.8 0.64 1.4E-05 37.0 7.1 82 472-553 8-94 (153)
293 PF13174 TPR_6: Tetratricopept 92.6 0.18 3.8E-06 28.3 3.1 29 539-567 2-30 (33)
294 PF13181 TPR_8: Tetratricopept 92.5 0.14 3.1E-06 29.0 2.6 29 506-534 4-32 (34)
295 PF13170 DUF4003: Protein of u 92.5 3.3 7.1E-05 38.3 12.6 63 214-276 160-226 (297)
296 KOG4648 Uncharacterized conser 92.4 0.28 6.1E-06 44.5 5.4 110 441-557 103-215 (536)
297 PRK09687 putative lyase; Provi 92.4 8.9 0.00019 35.3 26.0 17 434-450 205-221 (280)
298 PF07721 TPR_4: Tetratricopept 92.4 0.2 4.3E-06 26.4 2.8 24 538-561 2-25 (26)
299 PF13176 TPR_7: Tetratricopept 92.3 0.15 3.2E-06 29.6 2.5 26 505-530 1-26 (36)
300 PF13170 DUF4003: Protein of u 91.7 11 0.00024 34.9 17.8 63 417-480 160-226 (297)
301 PRK12798 chemotaxis protein; R 91.4 14 0.0003 35.4 20.9 185 382-569 125-327 (421)
302 PF07035 Mic1: Colon cancer-as 91.1 7.8 0.00017 32.1 15.8 39 254-292 16-54 (167)
303 KOG1586 Protein required for f 90.9 10 0.00022 33.0 15.1 17 515-531 166-182 (288)
304 PF13374 TPR_10: Tetratricopep 90.9 0.44 9.5E-06 28.5 3.7 28 538-565 3-30 (42)
305 COG1747 Uncharacterized N-term 90.8 18 0.00038 35.6 23.4 175 368-549 65-251 (711)
306 PF13431 TPR_17: Tetratricopep 90.5 0.37 8E-06 27.4 2.8 32 53-85 2-33 (34)
307 COG4649 Uncharacterized protei 90.4 9 0.0002 31.6 15.2 118 411-531 69-195 (221)
308 KOG4234 TPR repeat-containing 90.3 3 6.5E-05 35.1 8.8 93 407-503 102-201 (271)
309 TIGR02561 HrpB1_HrpK type III 90.3 3.1 6.8E-05 33.2 8.6 74 436-514 8-88 (153)
310 COG3629 DnrI DNA-binding trans 90.0 3.2 6.9E-05 37.6 9.6 59 403-463 156-215 (280)
311 PF13181 TPR_8: Tetratricopept 90.0 0.68 1.5E-05 26.1 3.8 29 538-566 2-30 (34)
312 TIGR03504 FimV_Cterm FimV C-te 90.0 0.63 1.4E-05 28.3 3.6 27 541-567 3-29 (44)
313 KOG1258 mRNA processing protei 89.7 24 0.00052 35.5 28.5 90 34-124 83-179 (577)
314 PF14561 TPR_20: Tetratricopep 89.7 0.9 2E-05 33.1 4.9 51 502-552 21-73 (90)
315 KOG4642 Chaperone-dependent E3 89.4 1.4 3.1E-05 38.1 6.5 82 484-565 23-106 (284)
316 KOG4648 Uncharacterized conser 89.3 1.2 2.7E-05 40.5 6.4 87 407-504 104-199 (536)
317 PF06552 TOM20_plant: Plant sp 89.2 0.65 1.4E-05 38.3 4.3 107 451-567 7-137 (186)
318 COG4455 ImpE Protein of avirul 89.1 0.96 2.1E-05 38.5 5.2 64 473-536 3-68 (273)
319 TIGR02508 type_III_yscG type I 88.9 7.5 0.00016 28.5 9.0 89 44-136 19-107 (115)
320 COG2976 Uncharacterized protei 88.8 14 0.00029 31.3 13.5 89 478-567 96-189 (207)
321 PRK10941 hypothetical protein; 88.6 1.8 4E-05 39.2 7.2 62 507-568 185-246 (269)
322 PF13174 TPR_6: Tetratricopept 88.5 0.57 1.2E-05 26.1 2.7 29 507-535 4-32 (33)
323 PF02284 COX5A: Cytochrome c o 88.5 3.9 8.3E-05 30.2 7.2 60 418-479 28-87 (108)
324 PF10602 RPN7: 26S proteasome 88.3 7.5 0.00016 32.8 10.3 58 371-428 38-101 (177)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 88.0 4.2 9.1E-05 29.6 7.1 62 416-479 23-84 (103)
326 PF10602 RPN7: 26S proteasome 87.8 8.5 0.00018 32.5 10.3 96 402-497 38-139 (177)
327 PF09986 DUF2225: Uncharacteri 87.6 1.7 3.6E-05 38.0 6.1 63 506-568 121-196 (214)
328 KOG1308 Hsp70-interacting prot 87.5 0.23 5.1E-06 45.1 0.9 90 483-572 126-217 (377)
329 KOG4570 Uncharacterized conser 87.4 1.8 3.9E-05 39.1 6.1 100 60-161 59-165 (418)
330 PF11207 DUF2989: Protein of u 87.3 5.1 0.00011 34.1 8.4 74 483-557 119-198 (203)
331 PF00637 Clathrin: Region in C 87.1 0.59 1.3E-05 38.0 2.9 84 137-223 13-96 (143)
332 PF00637 Clathrin: Region in C 87.1 0.69 1.5E-05 37.5 3.4 86 35-123 12-97 (143)
333 PRK11619 lytic murein transgly 87.0 43 0.00094 35.2 38.1 177 371-558 314-497 (644)
334 PF08631 SPO22: Meiosis protei 86.8 26 0.00056 32.3 24.7 66 267-334 121-192 (278)
335 KOG0276 Vesicle coat complex C 86.5 6.9 0.00015 39.0 9.9 44 447-497 649-692 (794)
336 KOG0545 Aryl-hydrocarbon recep 86.5 4.3 9.4E-05 35.4 7.6 57 511-567 238-294 (329)
337 COG5159 RPN6 26S proteasome re 86.4 24 0.00053 31.7 20.6 32 204-235 10-41 (421)
338 smart00028 TPR Tetratricopepti 86.4 1.3 2.8E-05 23.9 3.5 27 539-565 3-29 (34)
339 KOG0890 Protein kinase of the 86.3 83 0.0018 37.8 28.7 160 137-304 1389-1552(2382)
340 PF14853 Fis1_TPR_C: Fis1 C-te 86.1 1.9 4.1E-05 27.6 4.1 33 508-540 6-38 (53)
341 KOG2066 Vacuolar assembly/sort 85.4 51 0.0011 34.4 28.2 171 102-298 362-536 (846)
342 KOG0376 Serine-threonine phosp 85.3 0.75 1.6E-05 44.1 3.0 93 444-539 13-108 (476)
343 smart00028 TPR Tetratricopepti 85.1 1.7 3.6E-05 23.5 3.5 31 504-534 2-32 (34)
344 KOG3807 Predicted membrane pro 85.1 13 0.00028 34.1 10.3 15 521-535 380-394 (556)
345 COG4785 NlpI Lipoprotein NlpI, 84.9 25 0.00053 30.4 15.4 159 368-534 98-268 (297)
346 COG3947 Response regulator con 84.9 3.4 7.3E-05 37.0 6.5 61 505-565 281-341 (361)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 84.5 8.5 0.00018 28.1 7.1 47 316-362 24-70 (103)
348 KOG4570 Uncharacterized conser 84.4 13 0.00028 33.9 9.8 101 363-464 58-164 (418)
349 COG2909 MalT ATP-dependent tra 84.1 63 0.0014 34.4 24.0 217 344-563 425-685 (894)
350 PF02284 COX5A: Cytochrome c o 81.5 19 0.00042 26.7 8.2 56 489-544 28-86 (108)
351 PF04910 Tcf25: Transcriptiona 81.2 53 0.0012 31.6 14.0 56 510-565 110-167 (360)
352 PF11207 DUF2989: Protein of u 81.1 12 0.00025 32.0 8.0 73 417-490 123-197 (203)
353 PRK15180 Vi polysaccharide bio 80.9 31 0.00067 33.6 11.5 131 407-541 296-429 (831)
354 KOG0551 Hsp90 co-chaperone CNS 80.6 12 0.00026 34.4 8.4 89 475-563 85-179 (390)
355 KOG3364 Membrane protein invol 80.4 7.4 0.00016 30.5 6.0 70 468-537 29-105 (149)
356 PF13374 TPR_10: Tetratricopep 80.1 3.1 6.7E-05 24.6 3.5 27 504-530 3-29 (42)
357 PF12968 DUF3856: Domain of Un 79.8 25 0.00055 27.0 8.5 60 504-563 56-126 (144)
358 KOG4507 Uncharacterized conser 79.5 6.7 0.00015 38.9 6.9 99 447-548 619-721 (886)
359 TIGR02508 type_III_yscG type I 79.1 23 0.00051 26.1 8.9 85 147-235 21-105 (115)
360 PF10345 Cohesin_load: Cohesin 78.4 93 0.002 32.7 33.7 15 9-23 72-86 (608)
361 PRK15180 Vi polysaccharide bio 78.2 72 0.0016 31.3 27.3 119 141-262 299-421 (831)
362 KOG4279 Serine/threonine prote 78.1 39 0.00085 35.0 11.7 47 479-535 352-398 (1226)
363 KOG4642 Chaperone-dependent E3 78.0 36 0.00078 30.0 9.9 117 379-497 20-143 (284)
364 PF04097 Nic96: Nup93/Nic96; 77.9 95 0.0021 32.6 15.2 26 472-497 325-353 (613)
365 PF06552 TOM20_plant: Plant sp 77.8 14 0.0003 30.8 7.3 49 466-514 63-124 (186)
366 PF12862 Apc5: Anaphase-promot 77.3 6.2 0.00013 29.1 4.9 52 514-565 9-69 (94)
367 PF13929 mRNA_stabil: mRNA sta 77.0 59 0.0013 29.7 14.6 58 366-423 199-261 (292)
368 TIGR03504 FimV_Cterm FimV C-te 76.9 6.1 0.00013 24.1 3.8 25 102-126 5-29 (44)
369 PF10255 Paf67: RNA polymerase 76.9 16 0.00035 35.3 8.6 59 507-565 126-192 (404)
370 KOG1550 Extracellular protein 76.9 96 0.0021 32.1 21.8 46 518-566 490-538 (552)
371 COG2909 MalT ATP-dependent tra 76.6 1.1E+02 0.0024 32.7 25.2 220 277-497 425-685 (894)
372 PF14853 Fis1_TPR_C: Fis1 C-te 76.6 5.3 0.00012 25.6 3.7 32 539-570 3-34 (53)
373 KOG2422 Uncharacterized conser 76.2 59 0.0013 32.7 12.0 49 481-529 352-404 (665)
374 PF08311 Mad3_BUB1_I: Mad3/BUB 75.6 30 0.00065 27.2 8.5 43 520-562 80-124 (126)
375 COG4455 ImpE Protein of avirul 75.6 15 0.00032 31.7 6.9 58 403-462 4-62 (273)
376 PF13762 MNE1: Mitochondrial s 75.5 41 0.00089 27.1 10.7 78 67-144 41-128 (145)
377 PF10579 Rapsyn_N: Rapsyn N-te 75.2 8.9 0.00019 26.8 4.7 47 447-493 18-65 (80)
378 PF09670 Cas_Cas02710: CRISPR- 75.2 41 0.00089 32.7 11.1 25 566-590 355-379 (379)
379 KOG0276 Vesicle coat complex C 74.3 43 0.00093 33.8 10.6 150 10-193 599-748 (794)
380 COG5159 RPN6 26S proteasome re 73.4 35 0.00075 30.8 8.9 54 406-459 9-69 (421)
381 COG3947 Response regulator con 73.3 74 0.0016 29.0 11.6 57 201-258 283-339 (361)
382 smart00386 HAT HAT (Half-A-TPR 73.1 4.7 0.0001 22.1 2.7 29 517-545 1-29 (33)
383 PF10579 Rapsyn_N: Rapsyn N-te 72.7 8.7 0.00019 26.9 4.2 46 515-560 18-66 (80)
384 PF04097 Nic96: Nup93/Nic96; 72.5 1.3E+02 0.0028 31.6 20.6 46 98-144 113-158 (613)
385 KOG2063 Vacuolar assembly/sort 72.5 1.5E+02 0.0033 32.2 14.9 112 68-179 507-639 (877)
386 PF07163 Pex26: Pex26 protein; 71.0 47 0.001 30.1 9.2 19 407-425 125-143 (309)
387 PRK10941 hypothetical protein; 69.8 25 0.00054 32.0 7.7 67 476-542 186-254 (269)
388 KOG0292 Vesicle coat complex C 69.7 6.7 0.00014 41.0 4.4 71 444-530 629-699 (1202)
389 KOG4507 Uncharacterized conser 68.9 27 0.00059 35.0 8.0 86 483-568 619-707 (886)
390 PF09477 Type_III_YscG: Bacter 68.3 49 0.0011 24.9 10.1 89 43-135 19-107 (116)
391 KOG2581 26S proteasome regulat 68.0 61 0.0013 31.1 9.7 29 413-441 139-167 (493)
392 cd08819 CARD_MDA5_2 Caspase ac 67.3 33 0.00072 24.6 6.2 67 48-116 20-86 (88)
393 PRK13800 putative oxidoreducta 67.1 2.1E+02 0.0046 31.8 25.1 92 265-361 787-879 (897)
394 KOG4814 Uncharacterized conser 66.8 41 0.00089 34.2 8.9 88 482-569 365-460 (872)
395 KOG0991 Replication factor C, 66.5 85 0.0018 27.7 9.6 44 391-435 230-273 (333)
396 KOG1464 COP9 signalosome, subu 66.4 1E+02 0.0022 27.8 17.5 180 315-494 43-254 (440)
397 PF07163 Pex26: Pex26 protein; 66.3 66 0.0014 29.2 9.2 84 442-526 90-181 (309)
398 KOG4077 Cytochrome c oxidase, 66.3 39 0.00085 26.2 6.7 59 418-478 67-125 (149)
399 COG5191 Uncharacterized conser 66.0 16 0.00034 33.4 5.4 79 467-545 103-184 (435)
400 PF08311 Mad3_BUB1_I: Mad3/BUB 65.8 47 0.001 26.1 7.7 42 48-89 81-123 (126)
401 PF11846 DUF3366: Domain of un 65.7 30 0.00064 29.8 7.2 30 468-497 141-170 (193)
402 PF13762 MNE1: Mitochondrial s 64.9 73 0.0016 25.7 10.2 76 373-448 43-128 (145)
403 PHA02875 ankyrin repeat protei 64.2 1.4E+02 0.0031 29.4 12.8 13 177-189 143-155 (413)
404 COG4976 Predicted methyltransf 63.8 13 0.00028 32.3 4.4 57 481-537 5-63 (287)
405 PF11768 DUF3312: Protein of u 63.5 92 0.002 31.4 10.5 127 373-523 412-543 (545)
406 PF10345 Cohesin_load: Cohesin 62.6 2.1E+02 0.0045 30.2 40.2 49 516-564 547-604 (608)
407 COG2912 Uncharacterized conser 62.3 22 0.00048 32.0 5.7 58 509-566 187-244 (269)
408 PF04910 Tcf25: Transcriptiona 62.2 1.5E+02 0.0033 28.5 18.5 55 408-462 111-166 (360)
409 PF14863 Alkyl_sulf_dimr: Alky 62.0 27 0.00058 28.1 5.7 65 488-555 58-122 (141)
410 PF14561 TPR_20: Tetratricopep 61.8 60 0.0013 23.7 7.7 42 525-566 10-51 (90)
411 PF11846 DUF3366: Domain of un 61.6 29 0.00062 29.8 6.4 37 498-534 139-175 (193)
412 PF10366 Vps39_1: Vacuolar sor 61.2 15 0.00033 27.9 4.0 26 540-565 42-67 (108)
413 PF02184 HAT: HAT (Half-A-TPR) 60.4 16 0.00034 20.4 2.8 26 518-544 2-27 (32)
414 PF14689 SPOB_a: Sensor_kinase 60.0 21 0.00047 23.7 4.1 24 474-497 26-49 (62)
415 PF07720 TPR_3: Tetratricopept 59.1 21 0.00045 20.6 3.4 20 540-559 4-23 (36)
416 PF07575 Nucleopor_Nup85: Nup8 59.1 2.3E+02 0.005 29.5 18.4 148 401-568 373-526 (566)
417 KOG0403 Neoplastic transformat 59.0 1.8E+02 0.004 28.4 18.1 335 69-431 218-574 (645)
418 PF12862 Apc5: Anaphase-promot 58.9 30 0.00066 25.4 5.3 25 509-533 47-71 (94)
419 KOG1586 Protein required for f 58.8 1.3E+02 0.0028 26.6 15.4 18 517-534 209-226 (288)
420 KOG0545 Aryl-hydrocarbon recep 58.6 47 0.001 29.4 6.8 62 475-536 234-297 (329)
421 KOG4077 Cytochrome c oxidase, 58.5 43 0.00093 26.0 5.8 53 491-543 72-124 (149)
422 KOG1498 26S proteasome regulat 58.2 1.8E+02 0.0039 28.0 12.0 108 475-582 135-257 (439)
423 COG4976 Predicted methyltransf 57.9 16 0.00035 31.7 3.9 56 445-503 5-62 (287)
424 PF11848 DUF3368: Domain of un 57.7 44 0.00096 20.8 5.0 33 107-139 13-45 (48)
425 PF09477 Type_III_YscG: Bacter 56.8 84 0.0018 23.7 8.5 79 146-227 21-99 (116)
426 smart00777 Mad3_BUB1_I Mad3/BU 56.5 96 0.0021 24.4 7.9 41 521-561 81-123 (125)
427 COG1747 Uncharacterized N-term 55.9 2.3E+02 0.0049 28.5 21.2 93 297-395 65-157 (711)
428 KOG0686 COP9 signalosome, subu 55.8 2E+02 0.0043 27.8 11.5 58 168-225 152-215 (466)
429 cd08819 CARD_MDA5_2 Caspase ac 55.6 76 0.0016 22.9 6.7 38 178-216 48-85 (88)
430 KOG1550 Extracellular protein 55.6 2.6E+02 0.0056 29.0 20.5 117 107-227 260-394 (552)
431 PF11848 DUF3368: Domain of un 54.7 50 0.0011 20.6 5.1 33 411-443 13-45 (48)
432 KOG2422 Uncharacterized conser 54.6 2.5E+02 0.0055 28.6 17.2 154 407-565 349-515 (665)
433 KOG3824 Huntingtin interacting 54.5 20 0.00044 32.6 4.1 63 481-543 126-190 (472)
434 PF04190 DUF410: Protein of un 54.5 1.7E+02 0.0037 26.6 17.2 104 178-292 2-115 (260)
435 KOG1463 26S proteasome regulat 52.9 2E+02 0.0044 27.0 19.2 162 373-534 132-318 (411)
436 COG0735 Fur Fe2+/Zn2+ uptake r 52.8 96 0.0021 25.2 7.6 64 117-181 7-70 (145)
437 cd00280 TRFH Telomeric Repeat 52.4 1.2E+02 0.0025 25.7 7.8 21 443-463 119-139 (200)
438 KOG2471 TPR repeat-containing 52.4 2.5E+02 0.0055 28.0 14.6 104 447-551 252-383 (696)
439 KOG2297 Predicted translation 52.2 2E+02 0.0043 26.6 17.5 69 315-388 271-340 (412)
440 PF04190 DUF410: Protein of un 52.2 1.9E+02 0.0041 26.4 19.2 83 367-464 88-170 (260)
441 PF14689 SPOB_a: Sensor_kinase 51.9 41 0.0009 22.4 4.5 47 416-464 6-52 (62)
442 PRK13800 putative oxidoreducta 51.9 3.8E+02 0.0083 29.9 27.7 50 397-449 786-835 (897)
443 KOG1839 Uncharacterized protei 51.0 1.1E+02 0.0023 34.5 9.4 121 444-565 941-1085(1236)
444 KOG2908 26S proteasome regulat 50.3 55 0.0012 30.5 6.2 84 33-116 78-177 (380)
445 KOG2063 Vacuolar assembly/sort 50.2 3.8E+02 0.0082 29.4 24.1 29 198-226 505-533 (877)
446 KOG2908 26S proteasome regulat 50.0 2.3E+02 0.0049 26.7 10.3 51 446-496 86-140 (380)
447 PF04781 DUF627: Protein of un 49.9 1.1E+02 0.0025 23.3 7.1 40 521-560 62-101 (111)
448 PF13929 mRNA_stabil: mRNA sta 49.9 2.1E+02 0.0046 26.3 17.5 67 431-497 198-264 (292)
449 smart00777 Mad3_BUB1_I Mad3/BU 48.8 87 0.0019 24.6 6.4 37 84-120 82-123 (125)
450 KOG0991 Replication factor C, 47.8 2E+02 0.0044 25.5 13.5 48 500-548 236-283 (333)
451 PF09454 Vps23_core: Vps23 cor 47.8 83 0.0018 21.3 5.3 51 27-78 5-55 (65)
452 PF08424 NRDE-2: NRDE-2, neces 47.0 2.6E+02 0.0056 26.5 13.0 114 417-533 48-184 (321)
453 PF11838 ERAP1_C: ERAP1-like C 47.0 2.5E+02 0.0055 26.4 17.0 81 451-531 146-229 (324)
454 KOG3824 Huntingtin interacting 46.8 37 0.00081 31.0 4.6 55 445-502 126-182 (472)
455 PHA02875 ankyrin repeat protei 46.8 3E+02 0.0064 27.1 17.1 205 8-232 10-230 (413)
456 PF07064 RIC1: RIC1; InterPro 46.0 2.3E+02 0.0051 25.7 12.8 58 136-193 184-247 (258)
457 PF10366 Vps39_1: Vacuolar sor 45.7 1.3E+02 0.0029 22.8 7.2 27 98-124 41-67 (108)
458 PF11663 Toxin_YhaV: Toxin wit 45.7 28 0.00061 27.4 3.2 34 106-141 105-138 (140)
459 KOG4279 Serine/threonine prote 45.3 86 0.0019 32.7 7.3 27 402-428 203-229 (1226)
460 PF13934 ELYS: Nuclear pore co 45.2 2.2E+02 0.0048 25.2 12.4 20 406-425 114-133 (226)
461 PF09670 Cas_Cas02710: CRISPR- 45.0 3.1E+02 0.0066 26.8 13.8 16 382-397 182-197 (379)
462 COG4259 Uncharacterized protei 44.5 1.2E+02 0.0026 22.5 5.9 35 508-542 77-111 (121)
463 PRK10564 maltose regulon perip 44.5 43 0.00093 30.7 4.7 38 98-135 259-296 (303)
464 PF10516 SHNi-TPR: SHNi-TPR; 44.3 55 0.0012 19.2 3.6 28 538-565 2-29 (38)
465 cd00280 TRFH Telomeric Repeat 43.3 79 0.0017 26.6 5.6 46 451-497 85-137 (200)
466 COG0735 Fur Fe2+/Zn2+ uptake r 43.1 1.7E+02 0.0037 23.7 7.6 63 421-485 7-69 (145)
467 KOG0508 Ankyrin repeat protein 42.6 1.4E+02 0.003 29.4 7.7 80 171-255 119-203 (615)
468 KOG2758 Translation initiation 42.6 2.9E+02 0.0063 25.8 15.5 167 354-530 20-194 (432)
469 KOG4567 GTPase-activating prot 42.4 2.9E+02 0.0062 25.7 10.0 72 420-497 263-344 (370)
470 KOG0376 Serine-threonine phosp 42.1 43 0.00094 32.8 4.6 102 407-513 11-115 (476)
471 PRK10564 maltose regulon perip 41.9 48 0.001 30.4 4.6 37 200-236 260-296 (303)
472 KOG2581 26S proteasome regulat 41.6 3.4E+02 0.0074 26.4 11.6 130 368-502 123-279 (493)
473 COG4259 Uncharacterized protei 41.3 89 0.0019 23.1 4.9 43 520-562 54-97 (121)
474 PRK14015 pepN aminopeptidase N 41.2 5.4E+02 0.012 28.6 14.3 149 404-559 686-846 (875)
475 PF07575 Nucleopor_Nup85: Nup8 40.9 4.4E+02 0.0096 27.5 18.8 35 144-183 310-344 (566)
476 PF11663 Toxin_YhaV: Toxin wit 40.7 43 0.00092 26.4 3.5 33 207-241 105-137 (140)
477 PF11817 Foie-gras_1: Foie gra 40.4 1.1E+02 0.0023 27.6 6.8 21 442-462 185-205 (247)
478 PRK11639 zinc uptake transcrip 40.3 2E+02 0.0042 24.1 7.8 60 122-182 17-76 (169)
479 PF14669 Asp_Glu_race_2: Putat 39.5 2.4E+02 0.0053 24.1 14.9 26 339-364 137-162 (233)
480 cd08326 CARD_CASP9 Caspase act 39.5 89 0.0019 22.4 4.8 62 49-114 18-79 (84)
481 KOG2062 26S proteasome regulat 39.5 5E+02 0.011 27.6 31.3 179 381-562 369-562 (929)
482 PF11817 Foie-gras_1: Foie gra 39.4 88 0.0019 28.2 6.1 24 540-563 221-244 (247)
483 PRK09462 fur ferric uptake reg 38.9 2.1E+02 0.0046 23.2 7.8 62 120-182 6-68 (148)
484 PHA02537 M terminase endonucle 38.4 2.9E+02 0.0062 24.6 8.7 24 409-432 92-115 (230)
485 PF00244 14-3-3: 14-3-3 protei 38.3 2.9E+02 0.0064 24.7 12.4 58 406-463 7-65 (236)
486 COG0790 FOG: TPR repeat, SEL1 37.9 3.3E+02 0.0071 25.1 18.8 48 518-568 206-268 (292)
487 PRK12798 chemotaxis protein; R 36.8 4.2E+02 0.009 26.0 18.8 187 375-566 87-286 (421)
488 PRK09857 putative transposase; 36.6 2.3E+02 0.0049 26.4 8.3 65 507-571 210-274 (292)
489 KOG1464 COP9 signalosome, subu 36.5 3.3E+02 0.0071 24.7 20.4 120 402-527 193-327 (440)
490 KOG4567 GTPase-activating prot 36.4 3.6E+02 0.0078 25.1 9.3 71 151-222 263-343 (370)
491 PF04034 DUF367: Domain of unk 36.3 2.1E+02 0.0046 22.5 7.3 58 471-528 66-124 (127)
492 PF15469 Sec5: Exocyst complex 36.3 1.6E+02 0.0035 24.9 7.0 25 552-576 154-178 (182)
493 PF11838 ERAP1_C: ERAP1-like C 35.9 3.8E+02 0.0081 25.2 16.7 27 80-106 55-83 (324)
494 PF06957 COPI_C: Coatomer (COP 35.9 4.4E+02 0.0096 26.0 10.5 38 498-535 293-332 (422)
495 PF12926 MOZART2: Mitotic-spin 35.8 1.7E+02 0.0036 21.1 7.4 41 253-293 29-69 (88)
496 KOG2659 LisH motif-containing 35.6 3.1E+02 0.0068 24.2 9.3 97 431-530 22-130 (228)
497 PF13934 ELYS: Nuclear pore co 35.2 3.2E+02 0.007 24.2 10.6 21 441-461 114-134 (226)
498 COG5108 RPO41 Mitochondrial DN 35.2 2.5E+02 0.0053 29.2 8.5 88 171-261 33-132 (1117)
499 PRK11639 zinc uptake transcrip 34.2 1.9E+02 0.0041 24.2 6.8 33 416-448 41-73 (169)
500 PF09986 DUF2225: Uncharacteri 34.1 2.8E+02 0.0062 24.3 8.1 23 104-126 173-195 (214)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-90 Score=735.65 Aligned_cols=584 Identities=35% Similarity=0.614 Sum_probs=565.9
Q ss_pred CcccccccccCChHHHHHHhhhC--CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522 1 MNIVRANFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV 78 (590)
Q Consensus 1 ~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 78 (590)
|+||++|++.|++++|+.+|++| .+..||..+|+.++++|...+++..+.+++..+.+.|+.||..+++.++.+|++.
T Consensus 156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 35778888888888888888888 6788888888888888888888888888888888888888888999999999999
Q ss_pred CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522 79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ 158 (590)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (590)
|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.
T Consensus 236 g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 236 GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522 159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI 238 (590)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 238 (590)
+.|+.||..+|+.|+++|++.|++++|.++|++|..||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHH
Q 038522 239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEA 318 (590)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 318 (590)
+.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.++ .++|
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~-~~eA 474 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR-CFEA 474 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 038522 319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK 398 (590)
Q Consensus 319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (590)
+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~ 552 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK 552 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence 999999985 6999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522 399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV 478 (590)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 478 (590)
|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997779999999999999
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522 479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK 558 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 558 (590)
++|.+.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++++++|+++..|..|+++|+..|+|++|.+
T Consensus 633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCccCCCceEEeecCcccccc
Q 038522 559 TRKLMEERSLRKNPGYSFLQSSKKNILLL 587 (590)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (590)
+.+.|+++|++++||+||+++.++++.|+
T Consensus 713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~ 741 (857)
T PLN03077 713 VRKTMRENGLTVDPGCSWVEVKGKVHAFL 741 (857)
T ss_pred HHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence 99999999999999999999999999985
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-80 Score=659.46 Aligned_cols=566 Identities=27% Similarity=0.465 Sum_probs=535.5
Q ss_pred CcccccccccCChHHHHHHhhhC--CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522 1 MNIVRANFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV 78 (590)
Q Consensus 1 ~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 78 (590)
|.++++|.+.|++++|+.+|+.+ .+.+|+..+|..++++|.+.+.++.+.+++..+.+.+..++...++.++..|++.
T Consensus 55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~ 134 (857)
T PLN03077 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF 134 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence 46788999999999999999999 7789999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522 79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ 158 (590)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (590)
|+++.|.++|++|.+||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.
T Consensus 135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 214 (857)
T PLN03077 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV 214 (857)
T ss_pred CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522 159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI 238 (590)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 238 (590)
+.|+.||..+++.|+++|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.+
T Consensus 215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHH
Q 038522 239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEA 318 (590)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 318 (590)
+.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|++.|+ +++|
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~-~~~A 373 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL-PDKA 373 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 038522 319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK 398 (590)
Q Consensus 319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 398 (590)
+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 453 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK 453 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522 399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV 478 (590)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 478 (590)
|..+|++++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+
T Consensus 454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi 531 (857)
T PLN03077 454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALL 531 (857)
T ss_pred CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHH
Confidence 999999999999999999999999999986 59999999999999999999999999999999887 8888888888888
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHH
Q 038522 479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFD--MEPEKSVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A 556 (590)
++|.++|++++|.++|+++ .||..+|+.++.+|.+.|+.++|+++|+++.+ ..| |..+|..++.+|.+.|++++|
T Consensus 532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea 608 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQG 608 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHH
Confidence 8888888888888888777 67778888888888888888888888887774 345 677777777888888888888
Q ss_pred HHHHHHhh-hcCCccCC
Q 038522 557 RKTRKLME-ERSLRKNP 572 (590)
Q Consensus 557 ~~~~~~~~-~~~~~~~~ 572 (590)
.++|+.|. +.|+.|+.
T Consensus 609 ~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 609 LEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHHHHHHhCCCCch
Confidence 88888887 46766653
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-75 Score=608.56 Aligned_cols=493 Identities=33% Similarity=0.588 Sum_probs=485.1
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHH
Q 038522 94 RNVVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSAL 172 (590)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 172 (590)
++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 567799999999999999999999999998764 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHH
Q 038522 173 LDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKIS 252 (590)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 252 (590)
+++|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038522 253 QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGI 332 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p 332 (590)
+++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.++|..+||.++.+|++.|+ +++|+++|++|.+.|+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~-~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGY-SEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038522 333 DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAK 412 (590)
Q Consensus 333 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 412 (590)
|..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+||..+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYN 492 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (590)
.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877999999999999999999999999999
Q ss_pred HHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522 493 MIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP 572 (590)
Q Consensus 493 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (590)
++++|+..|+..+|+.++.+|...|+++.|..+++++.++.|++...|..|+.+|.+.|++++|.++++.|+++|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecCcccccc
Q 038522 573 GYSFLQSSKKNILLL 587 (590)
Q Consensus 573 ~~~~~~~~~~~~~~~ 587 (590)
++||+++.++++.|+
T Consensus 564 g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 564 ACTWIEVKKQDHSFF 578 (697)
T ss_pred CeeEEEECCeEEEEc
Confidence 999999999999886
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-68 Score=557.47 Aligned_cols=542 Identities=16% Similarity=0.189 Sum_probs=426.9
Q ss_pred HHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 038522 16 ALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGY-ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPER 94 (590)
Q Consensus 16 a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 94 (590)
+...++.....+++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~p 435 (1060)
T PLN03218 356 SLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNP 435 (1060)
T ss_pred hHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence 4444444455667788899999999999999999999999999886 567888889999999999999999999999999
Q ss_pred CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHH
Q 038522 95 NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLD 174 (590)
Q Consensus 95 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 174 (590)
|..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.+|+
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchHHHHHHHHHHH--cCCCCChhhHHHHHHHhccCCCh
Q 038522 175 LYAKCGWIEDAWILFERIER----KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR--QGMKPDCFTLGSILRASVGGIEL 248 (590)
Q Consensus 175 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~ 248 (590)
+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence 99999999999988888853 7888888888888888888888888888875 56788888888888888888888
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----CCCccchHHHHHHHHhcCCChHHHHHHHHH
Q 038522 249 MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML----KTDIISCTALISGFARDDNHSKEAFDLFKD 324 (590)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 324 (590)
++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.++ .++|.+++++
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~e 674 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 8888888888888888888888888888888888777777777772 4566677777777777776 7777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCc
Q 038522 325 MILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG----DKNV 400 (590)
Q Consensus 325 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~ 400 (590)
|.+.|+.||..+|+.++.+|++.|+++.|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 777777777777777777777777777777777777666677777777777777777777777777777664 3666
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522 401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL 480 (590)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (590)
.+|++++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|. +.++++..+.+.+..- .+ ...
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---~~--------g~~ 821 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---DS--------GRP 821 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---hc--------ccc
Confidence 6777777777777777777777777777777777777776665443 2344444443333211 00 000
Q ss_pred HHhcCChHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh-cCCCCCcchHHHHHHHHHhcCChHHH
Q 038522 481 FARRGQLESAYNMIRQM---NIKPTASLWSAILGACSIYGNTSLGELAARNLF-DMEPEKSVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A 556 (590)
....+..++|+.+|++| |+.||..+|+.++..+...+..+.+...++.+. .-.+.+..+|..|+.++.+ ..++|
T Consensus 822 ~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A 899 (1060)
T PLN03218 822 QIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRA 899 (1060)
T ss_pred ccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHH
Confidence 11122346799999999 999999999999977778888888888887765 3345578899999998732 23689
Q ss_pred HHHHHHhhhcCCccCCC
Q 038522 557 RKTRKLMEERSLRKNPG 573 (590)
Q Consensus 557 ~~~~~~~~~~~~~~~~~ 573 (590)
..++++|.+.|+.|+..
T Consensus 900 ~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 900 FSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHcCCCCCcc
Confidence 99999999999988764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.2e-68 Score=551.70 Aligned_cols=464 Identities=25% Similarity=0.420 Sum_probs=450.7
Q ss_pred cccccccccCChHHHHHHhhhC---CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522 2 NIVRANFKTGQLKQALKFSLSC---PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV 78 (590)
Q Consensus 2 ~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 78 (590)
+++.+|.+.|++++|+.+|+.+ .+..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|++.
T Consensus 92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 5678899999999999999999 3468999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522 79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ 158 (590)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (590)
|+++.|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|+.+.+.+++..+.
T Consensus 172 g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~ 251 (697)
T PLN03081 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251 (697)
T ss_pred CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522 159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI 238 (590)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 238 (590)
+.|+.||..+++.|+++|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l 331 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHH
Q 038522 239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEA 318 (590)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 318 (590)
+.+|++.|+++.|.+++..|.+.|++||..+++.|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|+ .++|
T Consensus 332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~-~~~A 410 (697)
T PLN03081 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR-GTKA 410 (697)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC-HHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHH-hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC-
Q 038522 319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK-YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG- 396 (590)
Q Consensus 319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 396 (590)
+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++++++.
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~ 490 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999976 6999999999999999999999999999999997
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522 397 DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP 469 (590)
Q Consensus 397 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (590)
+|+..+|++|+.+|...|+.+.|..+++++.+ +.| +..+|..++..|++.|++++|.++++.|.++ |+..
T Consensus 491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 68999999999999999999999999999975 466 4679999999999999999999999999988 7754
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-66 Score=542.23 Aligned_cols=494 Identities=15% Similarity=0.192 Sum_probs=421.0
Q ss_pred ccccccccCChHHHHHHhhhC--CC-CCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 038522 3 IVRANFKTGQLKQALKFSLSC--PD-TLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG 79 (590)
Q Consensus 3 l~~~~~~~g~~~~a~~~~~~~--~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (590)
++..+.+.|++++|+++|+.| .+ .+++...++.++..|.+.|.+++|..+++.|.. ||..+|+.++.+|++.|
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence 456677888999999999988 44 356667778888888888888888888887753 78888888888888888
Q ss_pred ChHHHHHHhccCCC----CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHH
Q 038522 80 DVLSARKAFDRMPE----RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQG 155 (590)
Q Consensus 80 ~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 155 (590)
+++.|.++|+.|.+ ||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 88888888888864 78888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 038522 156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIE------RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMK 229 (590)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 229 (590)
.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|++
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888884 378888888888888888888888888888888888
Q ss_pred CChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----CCCccchHHHH
Q 038522 230 PDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML----KTDIISCTALI 305 (590)
Q Consensus 230 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~ 305 (590)
|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .|+..+|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888883 56788888888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCh
Q 038522 306 SGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI 385 (590)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (590)
.+|++.|+ +++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++
T Consensus 692 ~ay~k~G~-~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 692 GACSNAKN-WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888888 88888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcC----CCCcchHHHHHHHHHh-----------------------cCCchHHHHHHHHHHHcCCCCcHHHH
Q 038522 386 ADANRAFDEMG----DKNVISWTSLIAGYAK-----------------------HGYGHEAIELYKKMKHEGMVPNDVTF 438 (590)
Q Consensus 386 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~m~~~g~~p~~~~~ 438 (590)
++|.++|++|. .||..+|++++..|.+ .+..+.|+.+|++|.+.|+.||..||
T Consensus 771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 88888888886 4788888888765432 11236799999999999999999999
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---CCCCCHh
Q 038522 439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM---NIKPTAS 504 (590)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~ 504 (590)
+.++.++...+....+..+++.|... +..|+..+|+.+|+++.+. .++|..++++| |+.|+..
T Consensus 851 ~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 99998888888899999999888766 7888899999999988432 46899999999 8888764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.2e-36 Score=326.62 Aligned_cols=549 Identities=12% Similarity=0.064 Sum_probs=304.1
Q ss_pred cccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHH
Q 038522 6 ANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSA 84 (590)
Q Consensus 6 ~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 84 (590)
.+...|++++|+..|+++ ...+.+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 455667777777777776 3334444555666666667777777777777766654 44556666666777777777777
Q ss_pred HHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC
Q 038522 85 RKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR 161 (590)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 161 (590)
...|+++.+ .+...|..+...+...|++++|++.++.+.+.... .......++..+.+.|+++.|..+++.+.+.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 383 AEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 777766543 23344555566666666666666666666554311 2223334445555666666666666666553
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522 162 FVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI 238 (590)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 238 (590)
.+++..++..+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.++++...+ +.+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 234455566666666666666666666655532 233445555555666666666666666655443 2344455555
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcCCCh
Q 038522 239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDDNHS 315 (590)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 315 (590)
...+.+.|+.++|..+++.+.+.+ +.+...+..++..|...|++++|..+++.+.. .+...|..+...+...++ +
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD-L 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-H
Confidence 555555666666666666555443 33444455555556666666666666555531 233455555555555555 5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 316 KEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEM 395 (590)
Q Consensus 316 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 395 (590)
++|...|+++.+.. +.+...+..+...+...|+++.|..+++.+.+..+. +...+..++..+...|++++|.++++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665555432 223344455555555556666666655555544322 3445555555555555555555555555
Q ss_pred CC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChh
Q 038522 396 GD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAE 472 (590)
Q Consensus 396 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 472 (590)
.+ ++...+..+...+...|++++|...|+++.+. .|+..++..+..++...|++++|.+.++.+.+. .+.+..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~ 771 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAV 771 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 42 23334455555555555555555555555543 233344445555555555555555555555542 223344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA 550 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 550 (590)
.+..+...|...|++++|.+.|+++ ..++++..+..+...+...|+ ++|+..++++++..|+++..+..++.+|...
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 5555555555555555555555555 223344455555555555555 5555555555555555555555555555555
Q ss_pred CChHHHHHHHHHhhhcC
Q 038522 551 GAWDNARKTRKLMEERS 567 (590)
Q Consensus 551 g~~~~A~~~~~~~~~~~ 567 (590)
|++++|.++++++.+.+
T Consensus 851 g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 851 GEADRALPLLRKAVNIA 867 (899)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 55555555555555544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.2e-35 Score=321.48 Aligned_cols=551 Identities=13% Similarity=0.045 Sum_probs=448.5
Q ss_pred ccccccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCh
Q 038522 3 IVRANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDV 81 (590)
Q Consensus 3 l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 81 (590)
+...+.+.|++++|+..++.+ ...+.+...+..+...+.+.|++++|.+.|+.+.+.. +.+...+..+...+...|++
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 413 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDP 413 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCCh
Confidence 345677889999999999888 5555567788888888889999999999999888765 45677788888888889999
Q ss_pred HHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522 82 LSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ 158 (590)
Q Consensus 82 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (590)
++|.+.|+.+.+ .+...+..++..+.+.|++++|.++++.+.+. .+++..++..+...+...|++++|...++.+.
T Consensus 414 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 999998888765 23345666778888999999999999988764 45567788888888889999999999999888
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522 159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL 235 (590)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 235 (590)
+.. +.+...+..+...+...|++++|.+.|+++.+ .+..++..+...+.+.|+.++|...++++...+ +.+...+
T Consensus 493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 570 (899)
T TIGR02917 493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPA 570 (899)
T ss_pred hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHH
Confidence 764 44556777788888999999999999988764 356678888888889999999999999887764 4456677
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcC
Q 038522 236 GSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDD 312 (590)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 312 (590)
..+...+...|++++|..+++.+.+.. +.+..++..+..++...|++++|...|+.+.+ .+...+..+...+...+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 778888889999999999999887654 56677888889999999999999999988743 34556777888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 038522 313 NHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAF 392 (590)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (590)
+ +++|...++++.+.. +.+..++..+...+...|+++.|..+++.+.+..+ .+...+..+...+.+.|++++|...|
T Consensus 650 ~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 650 N-YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred C-HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8 999999999888653 44567788888888899999999999998887764 36667778888888999999999999
Q ss_pred HhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC
Q 038522 393 DEMG--DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR 470 (590)
Q Consensus 393 ~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 470 (590)
+.+. .|+..++..+...+.+.|++++|.+.++++.+. .+.+...+..+...|...|++++|.+.|+++.+. .+++
T Consensus 727 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 803 (899)
T TIGR02917 727 RKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDN 803 (899)
T ss_pred HHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCC
Confidence 8876 355567777888889999999999999998875 2456778888888888899999999999999864 2456
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
...+..+...+...|+ .+|+++++++ ...| ++..+..+...+...|++++|...++++++.+|.++.++..++.+|.
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 7788888888999998 7899999887 4444 45567788888888999999999999999999988999999999999
Q ss_pred hcCChHHHHHHHHHhhh
Q 038522 549 AAGAWDNARKTRKLMEE 565 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~ 565 (590)
..|++++|.+++++|.+
T Consensus 883 ~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 883 ATGRKAEARKELDKLLN 899 (899)
T ss_pred HcCCHHHHHHHHHHHhC
Confidence 99999999999988753
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.3e-26 Score=253.36 Aligned_cols=547 Identities=11% Similarity=0.043 Sum_probs=368.8
Q ss_pred cccccccCChHHHHHHhhhCCCCCCCcccH-----------------HHHHHHhhcccchhHHHHHHHHHHHhcCCCchh
Q 038522 4 VRANFKTGQLKQALKFSLSCPDTLLDPSTY-----------------MSLLQFCIDKKAERQAHLIHAHIITNGYESNLH 66 (590)
Q Consensus 4 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 66 (590)
++.+.+.|+.++|.+.++++....|+...+ ..+.+.+...|++++|.+.++.+.+.+ +|+..
T Consensus 69 ~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~ 147 (1157)
T PRK11447 69 FRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELD 147 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChH
Confidence 455677788888888888883333433222 233445677788888888888877654 33332
Q ss_pred H-HHHHHHHHHhcCChHHHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCC---------------
Q 038522 67 L-STKVIIFYAKVGDVLSARKAFDRMPE--R-NVVSWTAMISGYAQNGYDENALLVFSAMLRSGV--------------- 127 (590)
Q Consensus 67 ~-~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--------------- 127 (590)
. ...........|++++|++.|+++.+ | +...+..+...+...|+.++|+..++++.+...
T Consensus 148 la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 148 LAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 1 11112222345778888888887765 3 344566777777778888888888877654210
Q ss_pred ---C--------------CCHhhH---------------------HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHH
Q 038522 128 ---R--------------ANQFTY---------------------SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVK 169 (590)
Q Consensus 128 ---~--------------p~~~~~---------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 169 (590)
. |+.... ......+...|++++|...++..++.. +.+..++
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~ 306 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL 306 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 0 100000 011122445677777777777777653 3356667
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCC--CCc---chHHH------------HHHHHHhcCCchHHHHHHHHHHHcCCCCCh
Q 038522 170 SALLDLYAKCGWIEDAWILFERIER--KDV---VSWNA------------MIGGLAMQGFNDDSFWLFRSMMRQGMKPDC 232 (590)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 232 (590)
..+..+|.+.|++++|+..|++..+ |+. ..|.. ....+.+.|++++|...|++..... +.+.
T Consensus 307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~ 385 (1157)
T PRK11447 307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS 385 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 7777777777777777777776654 221 11211 1334566777777777777777653 2344
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC------------ccc
Q 038522 233 FTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD------------IIS 300 (590)
Q Consensus 233 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~ 300 (590)
..+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .++.++|..+++.+.... ...
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 555566667777777777777777777654 333445555555553 346677777776653221 112
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 038522 301 CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYA 380 (590)
Q Consensus 301 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 380 (590)
+..+...+...++ +++|+..|++.++.. +-+...+..+...+...|++++|...++.+.+..+. ++..+..+...+.
T Consensus 464 ~~~~a~~~~~~g~-~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~ 540 (1157)
T PRK11447 464 LAQQAEALENQGK-WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 3344556667788 899999999888653 224455667777888899999999999988875543 3444444555667
Q ss_pred hcCChHHHHHHHHhcCCCC----c---------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522 381 KSGEIADANRAFDEMGDKN----V---------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447 (590)
Q Consensus 381 ~~~~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 447 (590)
..++.++|...++.+.... . ..+..+...+...|+.++|..+++. .+++...+..+...+.+
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence 7889999999998876321 1 1123445677889999999998872 24466677788889999
Q ss_pred cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHH
Q 038522 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELA 525 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 525 (590)
.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.++.. ...| +...+..+..++...|++++|.+.
T Consensus 616 ~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999964 2335788899999999999999999999988 4455 455677788888899999999999
Q ss_pred HHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 526 ARNLFDMEPEKS------VNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 526 ~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+++++...|+++ ..+..++.++...|++++|++.+++...
T Consensus 694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999998876544 3566789999999999999999999875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=5.8e-26 Score=248.16 Aligned_cols=557 Identities=10% Similarity=0.026 Sum_probs=400.8
Q ss_pred cccccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHH--------------
Q 038522 4 VRANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLS-------------- 68 (590)
Q Consensus 4 ~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------- 68 (590)
++.+...++.+.|...++++ ...+.++..+..+++.+.+.|+.++|.+.++.+.+.. +.+....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchh
Confidence 45567789999999999999 5555577788999999999999999999999999986 3343332
Q ss_pred --HHHHHHHHhcCChHHHHHHhccCCCCCccchH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038522 69 --TKVIIFYAKVGDVLSARKAFDRMPERNVVSWT----AMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACA 142 (590)
Q Consensus 69 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 142 (590)
..+...+.+.|++++|...|+.+.+.+..... .........|+.++|++.|+++.+.. +-+...+..+...+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~ 192 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF 192 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 23345688899999999999998763222211 11122234589999999999999863 335556677777788
Q ss_pred ccCchhhHHHHHHHHHhcCC------------------C--------------CchHH---------------------H
Q 038522 143 RMRWLQGGRMIQGSIQKGRF------------------V--------------ENLFV---------------------K 169 (590)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~------------------~--------------~~~~~---------------------~ 169 (590)
..|+.++|...++.+.+... . |+... .
T Consensus 193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~ 272 (1157)
T PRK11447 193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA 272 (1157)
T ss_pred ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence 89999999999988765321 0 10000 0
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhH----------
Q 038522 170 SALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD-CFTL---------- 235 (590)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~---------- 235 (590)
......+...|++++|...|++..+ | +...+..+..++.+.|++++|+..|++..+...... ...+
T Consensus 273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 0123455667888888888877754 3 556777788888888888888888888776532111 1111
Q ss_pred --HHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--C-CccchHHHHHHHHh
Q 038522 236 --GSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T-DIISCTALISGFAR 310 (590)
Q Consensus 236 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 310 (590)
......+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|+++.. | +...+..+...+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 112334567888888888888888764 34556667778888888888888888888753 2 2334444555543
Q ss_pred cCCChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522 311 DDNHSKEAFDLFKDMILKKMG--------IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS 382 (590)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (590)
.++ .++|..+++.+...... .....+......+...|++++|...++.+.+..+. ++..+..+...|.+.
T Consensus 431 ~~~-~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 431 QQS-PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA 508 (1157)
T ss_pred hcC-HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 345 78888777665322100 01122344556677788999999999998887654 566777888889999
Q ss_pred CChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHH---------HHHHHHHHhhccCC
Q 038522 383 GEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDV---------TFLSLLFACSHTGL 450 (590)
Q Consensus 383 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~ 450 (590)
|++++|...++++.+ | +...+..+...+...+++++|+..++++......++.. .+..+...+...|+
T Consensus 509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999988753 3 34445555556677888999999888765432222221 12344567788899
Q ss_pred hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARN 528 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 528 (590)
.++|.++++. .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++.+++
T Consensus 589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998871 2445667778899999999999999999998 4445 577889999999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522 529 LFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP 572 (590)
Q Consensus 529 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (590)
+.+..|+++..+..++.++...|++++|.++++.+.+......|
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 99999999999999999999999999999999999886544333
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.8e-23 Score=218.07 Aligned_cols=542 Identities=11% Similarity=-0.005 Sum_probs=377.3
Q ss_pred cccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522 8 FKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86 (590)
Q Consensus 8 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 86 (590)
...|++++|+..|+++ ...|-+..++..+.+++...|+.++|....++..+.. +.|...+..+ ..+ ++.++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHH
Confidence 3459999999999999 5455566788999999999999999999999999875 3445555444 222 88899999
Q ss_pred HhccCCC--CC-ccchHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCchhhHHHHH
Q 038522 87 AFDRMPE--RN-VVSWTAMISG--------YAQNGYDENALLVFSAMLRSGVRANQFTYSSA-LRACARMRWLQGGRMIQ 154 (590)
Q Consensus 87 ~~~~~~~--~~-~~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~ 154 (590)
+++++.. |+ ..++..+... |.+. ++|.+.++ .......|+..+.... .+.+.+.+++++|..++
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999875 43 4455555554 5444 55555555 4333344455555555 88899999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHh-cCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CCh
Q 038522 155 GSIQKGRFVENLFVKSALLDLYAK-CGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMK-PDC 232 (590)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~ 232 (590)
..+.+.+. .+......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.++++++...-.. |..
T Consensus 206 ~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 206 NEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 99999863 345556667778887 466 88888877655568888999999999999999999999987543211 222
Q ss_pred hhHHHH------------------------------HHHhccCCChhHHHHHHH--------------------------
Q 038522 233 FTLGSI------------------------------LRASVGGIELMKISQIHD-------------------------- 256 (590)
Q Consensus 233 ~~~~~l------------------------------l~~~~~~~~~~~a~~~~~-------------------------- 256 (590)
.++..+ +..+.+.++++.++++..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 222221 233334444444443321
Q ss_pred ---HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--CCcc----chHHHHHHHHhcCC--ChHHHHHH----
Q 038522 257 ---LIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--TDII----SCTALISGFARDDN--HSKEAFDL---- 321 (590)
Q Consensus 257 ---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~~~--~~~~a~~~---- 321 (590)
.+.+.. +-+.....-+.-...+.|+.++|.++|+.... ++.. ...-++..+.+.+. ...++..+
T Consensus 364 ~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 364 LARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 111110 11222222333345567888889988888743 2221 22244455554432 01222222
Q ss_pred ------------------HHHHHH-cCCCC---CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 038522 322 ------------------FKDMIL-KKMGI---DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMY 379 (590)
Q Consensus 322 ------------------~~~~~~-~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (590)
+..... .+..| +...+..+..++.. ++.++|...+.......+ +......+...+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al 519 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAWQHRAVAYQA 519 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chHHHHHHHHHH
Confidence 111111 11223 34444445444444 788888887777776653 333344455556
Q ss_pred HhcCChHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHH
Q 038522 380 AKSGEIADANRAFDEMGD--KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWEL 457 (590)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 457 (590)
...|++++|...|+++.. |+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|++++|...
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 789999999999998763 444566777788899999999999999998863 22333444444455567999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 458 FTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
+++..+. .|+...+..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++..|+
T Consensus 599 ~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 599 LTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999954 678888999999999999999999999998 5566 4567788888999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 536 KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 536 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
++.++..++.++...|++++|+..+++..+..+
T Consensus 676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999887553
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.3e-21 Score=204.32 Aligned_cols=543 Identities=9% Similarity=-0.053 Sum_probs=392.6
Q ss_pred cccccccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHH-------
Q 038522 2 NIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIF------- 74 (590)
Q Consensus 2 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------- 74 (590)
.|.+.|...|++++|+..++++....|+-..|..++... ++.++|..+++++.+.. +.+..++..+...
T Consensus 83 ~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 83 YLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchh
Confidence 467889999999999999999944455544454444333 88999999999999986 4566677666666
Q ss_pred -HHhcCChHHHHHHhccCCCCC--ccchHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cCchhh
Q 038522 75 -YAKVGDVLSARKAFDRMPERN--VVSWTAM-ISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR-MRWLQG 149 (590)
Q Consensus 75 -~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 149 (590)
|.+.++..++++ .....|+ ..+.... .+.|.+.|++++|++.+.++.+.+. .+..-...+-.++.. .++ +.
T Consensus 159 ~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 159 RLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HH
Confidence 777766666666 3333343 4434444 8899999999999999999999763 334445555566666 356 66
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-----CCcch-------------------------
Q 038522 150 GRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER-----KDVVS------------------------- 199 (590)
Q Consensus 150 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~------------------------- 199 (590)
+..++.. .+..+......+.+.|.+.|+.++|.+++++++. |+..+
T Consensus 235 a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 6666442 3446888999999999999999999999998863 11111
Q ss_pred -----HHHHHHHHHhcCCchHHHHHHH-----------------------------HHHHcCCCCChhhHHHHHHHhccC
Q 038522 200 -----WNAMIGGLAMQGFNDDSFWLFR-----------------------------SMMRQGMKPDCFTLGSILRASVGG 245 (590)
Q Consensus 200 -----~~~li~~~~~~~~~~~a~~~~~-----------------------------~m~~~~~~p~~~~~~~ll~~~~~~ 245 (590)
.-.++..+.+.++++.+.++.. .|... .+-+......+--...+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~ 389 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQN 389 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Confidence 1112455556666665554422 11111 011222222333335578
Q ss_pred CChhHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCC---hHHHHHH-------------------------HHhccC
Q 038522 246 IELMKISQIHDLIIKL-G-LESSNKLTGSLIDVYAKYGS---IRSAYQL-------------------------YRSMLK 295 (590)
Q Consensus 246 ~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------------------~~~~~~ 295 (590)
|+.++|.++++..... + ..++.....-++..|.+.+. ..++..+ +.....
T Consensus 390 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 469 (987)
T PRK09782 390 GQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG 469 (987)
T ss_pred ccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence 8899999999988763 1 23345556678888887766 3333333 111111
Q ss_pred ---C--CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh
Q 038522 296 ---T--DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA 370 (590)
Q Consensus 296 ---~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (590)
+ +...|..+...+.. ++ .++|+..+.+.... .|+......+...+...|+++.|...++.+.... |+..
T Consensus 470 ~~p~~~~~~a~~~LG~~l~~-~~-~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~ 543 (987)
T PRK09782 470 DMSPSYDAAAWNRLAKCYRD-TL-PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNE 543 (987)
T ss_pred cCCCCCCHHHHHHHHHHHHh-CC-cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcH
Confidence 1 34455666666655 66 88899988887765 4776554455556678999999999999876553 3334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSL---IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 447 (590)
.+..+...+.+.|++++|...+++..+.++...+.. .......|++++|...+++..+. .|+...+..+..++.+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~ 621 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 456677888999999999999998876444333333 33444559999999999999975 6788889999999999
Q ss_pred cCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHH
Q 038522 448 TGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGEL 524 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 524 (590)
.|++++|...+++.... .|+ ...+..+..++...|++++|++.+++. ...| ++..+..+..++...|+++.|+.
T Consensus 622 lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 622 RHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999964 554 778888889999999999999999998 5555 56788999999999999999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 525 AARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 525 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
.+++++++.|++..+....++......+++.|.+-++..-.-++
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999999999999999999999999999999998887655443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=5.5e-21 Score=177.50 Aligned_cols=442 Identities=16% Similarity=0.120 Sum_probs=343.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 038522 100 TAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKC 179 (590)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (590)
..|..-..+.|++++|.+.-...-... +.+..+.-.+-..+.+..+++...+.-....+. .+.-..+|..+.+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 344455556777777777655543332 111111111222234444444444433333333 234566888888888888
Q ss_pred CChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHH-HHHHhccCCChhHHHHHH
Q 038522 180 GWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGS-ILRASVGGIELMKISQIH 255 (590)
Q Consensus 180 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~ 255 (590)
|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+ +...+...|++++|..-+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999988888765 24677888889999999999999999888764 566555443 334445578888888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038522 256 DLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMILKKMGI 332 (590)
Q Consensus 256 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p 332 (590)
.+.++.. +-=...|+.|...+-..|+...|+.-|++..+-|+ ..|-.|...|-..+. +++|+..+.+.... .|
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~-~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI-FDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc-chHHHHHHHHHHhc--CC
Confidence 8877654 23345678888889999999999999999865443 467778888888888 99999999887754 55
Q ss_pred CH-HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHH
Q 038522 333 DD-VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIA 408 (590)
Q Consensus 333 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 408 (590)
+. ..+..+...|...|.++.|+..+++.++..+. -+..|+.+..++-..|++.+|.+.|.+... | ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 54 55667777788899999999999999887654 477889999999999999999999998874 3 4468889999
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCC
Q 038522 409 GYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQ 486 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 486 (590)
.+...|.+++|..+|....+ +.|. ...++.|...|-..|++++|+.-+++.. .++|+ ...++.+...|...|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999887 5675 4578889999999999999999999999 67888 6789999999999999
Q ss_pred hHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522 487 LESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN 555 (590)
Q Consensus 487 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 555 (590)
...|.+.+.++ .+.|. ...++.|...|...|+++.|++.|+.++++.|+.+.+|-.++.++---.+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99999999998 77775 46789999999999999999999999999999999999999988777666666
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-20 Score=175.25 Aligned_cols=421 Identities=15% Similarity=0.122 Sum_probs=339.2
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcC
Q 038522 135 SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQG 211 (590)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 211 (590)
..+..-..+.|++.+|++.-...-..+ +.+......+-..+....+.+.....-....+ .-..+|+.+...+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 344455667889999988776665543 23333334444556666666654433322222 24568999999999999
Q ss_pred CchHHHHHHHHHHHcCCCC-ChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHH
Q 038522 212 FNDDSFWLFRSMMRQGMKP-DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKL-TGSLIDVYAKYGSIRSAYQL 289 (590)
Q Consensus 212 ~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~ 289 (590)
+.++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++. .|+... .+.+...+...|++.+|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 999999999999986 45 5678899999999999999999999998875 344433 33345556668999999998
Q ss_pred HHhccCCC---ccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchhhhHhHHHHHHHHHHhCC
Q 038522 290 YRSMLKTD---IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVASLNLGRQIHAFAFKYQS 365 (590)
Q Consensus 290 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (590)
+.+.++.+ ...|+.|...+-.+|+ ...|+..|++.+.. .|+- ..|..+-..+...+.++.|...+..+....+
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Ge-i~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGE-IWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcch-HHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 88875433 4679999999999999 99999999998854 4543 5677778888888888888888887776553
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHH
Q 038522 366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGD--KN-VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSL 441 (590)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 441 (590)
. ....+..+...|-..|.+|-|+..|++..+ |+ +..|+.|..++...|+..+|...|.+.... .|+ ....+.|
T Consensus 284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL 360 (966)
T KOG4626|consen 284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL 360 (966)
T ss_pred c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence 3 455666777788899999999999999874 54 358999999999999999999999999874 665 5678889
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCC
Q 038522 442 LFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGN 518 (590)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~ 518 (590)
...+...|.+++|..+|.... .+.|. ...++.|...|-.+|++++|+.-+++. .+.|+. .+++.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 999999999999999999998 45676 668899999999999999999999998 888875 678999999999999
Q ss_pred chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 519 TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
.+.|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-+++..+..+.
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999998875543
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=4.6e-19 Score=182.40 Aligned_cols=418 Identities=10% Similarity=-0.036 Sum_probs=292.2
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhc
Q 038522 134 YSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQ 210 (590)
Q Consensus 134 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~ 210 (590)
+......+.+.|+++.|...|+..++. .|+...|..+..+|.+.|++++|.+.++...+ | +...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445556677888999999999888875 46677888888889999999999988888765 2 445777788888899
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 038522 211 GFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLY 290 (590)
Q Consensus 211 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 290 (590)
|++++|+..|......+- .+......++..+.. ..+........+.. +++...+..+.. |...........-+
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999888876654321 111111122211111 12222222222222 222222222222 22221111121112
Q ss_pred HhccCCCc---cchHHHHHHH---HhcCCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHhchhhhHhHHHHHHHHHH
Q 038522 291 RSMLKTDI---ISCTALISGF---ARDDNHSKEAFDLFKDMILKK-MGID-DVILCLMLNICANVASLNLGRQIHAFAFK 362 (590)
Q Consensus 291 ~~~~~~~~---~~~~~l~~~~---~~~~~~~~~a~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (590)
....+.+. ..+..+.... ...+. +++|...|++..+.+ ..|+ ...+..+...+...|+++.|...++...+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~-y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADES-YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhh-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22111111 1111111111 12345 899999999998765 3343 34566667777889999999999999988
Q ss_pred hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHH
Q 038522 363 YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTF 438 (590)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~ 438 (590)
..+. ....|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .| +...+
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 7543 456778888899999999999999998763 35678888999999999999999999999985 45 56677
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hH-------HHHH
Q 038522 439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SL-------WSAI 509 (590)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~l 509 (590)
..+...+.+.|++++|+..+++..+. .+.+...++.+..++...|++++|++.|++. .+.|+. .. ++..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 78888899999999999999999864 2335788899999999999999999999997 444431 11 1112
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
...+...|++++|++.++++++++|++..++..++.++...|++++|++++++..+.
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 223344699999999999999999999999999999999999999999999998764
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.7e-18 Score=169.60 Aligned_cols=550 Identities=12% Similarity=0.071 Sum_probs=380.8
Q ss_pred cccCChHHHHHHhhhC----CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChH-
Q 038522 8 FKTGQLKQALKFSLSC----PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVL- 82 (590)
Q Consensus 8 ~~~g~~~~a~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~- 82 (590)
...|++..|+.+|.++ +..+||+.. .+..++.+.++.+.|...|....+.++ .++.++..|...-....+.+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHH
Confidence 3457788888888886 445555432 333566677888888888888877752 34444444444333333333
Q ss_pred --HHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHhccCchhhHHHHHH
Q 038522 83 --SARKAFDRMP---ERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVR--ANQFTYSSALRACARMRWLQGGRMIQG 155 (590)
Q Consensus 83 --~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~ 155 (590)
.+..++...- ..|+...+.|.+.|.-.|++..++++...+...... .-...|-.+.+++-..|+++.|...|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3333333322 257788888999999999999999999888765311 223457778888999999999999998
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcC----CchHHHHHHHHHHHcCC
Q 038522 156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQG----FNDDSFWLFRSMMRQGM 228 (590)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~ 228 (590)
...+.....-...+--|...|.+.|+.+.+...|+.+.+ | +..+...|...|...+ ..+.|..++.+....-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~- 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT- 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence 887764222233445678899999999999999998875 3 3344555555555554 4566777776666542
Q ss_pred CCChhhHHHHHHHhccCCChhHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC-------CC
Q 038522 229 KPDCFTLGSILRASVGGIELMKISQIHDLI----IKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK-------TD 297 (590)
Q Consensus 229 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~ 297 (590)
+.|...|..+-..+....-+ ....++..+ ...+.++.+...|.+...+...|++..|...|+.... ++
T Consensus 411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 44566666666655544433 336655544 4556678888999999999999999999999988732 12
Q ss_pred cc------chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh
Q 038522 298 II------SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDV-ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA 370 (590)
Q Consensus 298 ~~------~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (590)
.. +-..+...+-..++ ++.|.+.|+.+... .|.-+ .|..+.......++..+|...++....... .++.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~-~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~ 565 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHD-TEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPN 565 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcH
Confidence 21 11122233334445 88999999999876 45433 333333223344677788888877776543 2555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHh------------cCCchHHHHHHHHHHHcCCCC
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAK------------HGYGHEAIELYKKMKHEGMVP 433 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~g~~p 433 (590)
....+...|.+...+..|..-|+.+.+ +|+.+.-+|...+.+ .+..++|+++|.+.++. -+-
T Consensus 566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpk 644 (1018)
T KOG2002|consen 566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPK 644 (1018)
T ss_pred HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Ccc
Confidence 556677788888888888886666542 344444445554432 23567889999988875 233
Q ss_pred cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCCHhHHHHH
Q 038522 434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM----NIKPTASLWSAI 509 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l 509 (590)
|...-+.+.-.++..|++.+|..+|..+.+.. .-...+|-.+..+|..+|++..|+++|+.. .-..+......|
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 77777888888899999999999999999862 234567888999999999999999999987 334477788999
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-------------------CChHHHHHHHHHhhhcCCc
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA-------------------GAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~ 569 (590)
.+++...|++.+|.+.+..+..+.|.++.....++.+..+. +..++|.++|.++...+-+
T Consensus 723 ara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999998887776665433 4567788888888876654
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.7e-19 Score=176.44 Aligned_cols=233 Identities=13% Similarity=0.106 Sum_probs=171.6
Q ss_pred HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--Cc------chHHHHHH
Q 038522 337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK--NV------ISWTSLIA 408 (590)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~------~~~~~l~~ 408 (590)
+..+...+...|+++.|..++..+.+.. +.+..+++.++.++.+.|++++|.+.++.+.+. +. ..+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3344444445555555555555554432 224455666666777777777777777766531 11 13455677
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCC
Q 038522 409 GYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQ 486 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 486 (590)
.+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|...|+
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCC
Confidence 7788899999999999988752 234567777888899999999999999999864 343 4567888999999999
Q ss_pred hHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHH
Q 038522 487 LESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA---AGAWDNARKTRKL 562 (590)
Q Consensus 487 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 562 (590)
+++|.+.++++ ...|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+.. .|+.++|..++++
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999998 5677777778888999999999999999999999999655 55555554443 5699999999999
Q ss_pred hhhcCCccCCCce
Q 038522 563 MEERSLRKNPGYS 575 (590)
Q Consensus 563 ~~~~~~~~~~~~~ 575 (590)
+.+++++++|.+.
T Consensus 344 ~~~~~~~~~p~~~ 356 (389)
T PRK11788 344 LVGEQLKRKPRYR 356 (389)
T ss_pred HHHHHHhCCCCEE
Confidence 9999998888743
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.2e-17 Score=161.90 Aligned_cols=548 Identities=11% Similarity=0.036 Sum_probs=374.3
Q ss_pred hHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccC
Q 038522 13 LKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRM 91 (590)
Q Consensus 13 ~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 91 (590)
.+.|...|... ...+++.-.+.--.......+++..|..+|..++...+..-+...-.+...+.+.|+.+.|...|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 57777777777 55555554444444555567789999999998766544333333344556777889999999999888
Q ss_pred CCCCccchHHHHHHH---HhcC---ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCC--
Q 038522 92 PERNVVSWTAMISGY---AQNG---YDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFV-- 163 (590)
Q Consensus 92 ~~~~~~~~~~li~~~---~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-- 163 (590)
.+-|+..-++++... .... .+..+...+...-... .-++...+.|-+.+.-.|++..+..+.+.+......
T Consensus 226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 875554444433221 2222 3344555555544322 245566777778888889999999998888775421
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhccCC--CC--cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 038522 164 ENLFVKSALLDLYAKCGWIEDAWILFERIER--KD--VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSIL 239 (590)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 239 (590)
.-...|-.+.++|-..|++++|...|....+ ++ +..+--+...+...|+.+.+...|+...... +-+..|...+.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG 383 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILG 383 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 2233566788889999999999998877664 22 2345557788899999999999999887762 44556666666
Q ss_pred HHhccCC----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--------cCCCccchHHHHHH
Q 038522 240 RASVGGI----ELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM--------LKTDIISCTALISG 307 (590)
Q Consensus 240 ~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~l~~~ 307 (590)
..|...+ ..+.|..++....+.. +.|...|-.+...+....-+ .++..|... ....+...|.+...
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 6666554 4566666666665544 55667777676666554432 335544443 23456678888888
Q ss_pred HHhcCCChHHHHHHHHHHHHc---CCCCCH-----HH-HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHH
Q 038522 308 FARDDNHSKEAFDLFKDMILK---KMGIDD-----VI-LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDM 378 (590)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~---~~~p~~-----~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (590)
....|. +.+|...|++.... ...+|. .| --.+.......++.+.|.+.|..+.+..+. -+..|-.+..+
T Consensus 462 hf~~g~-~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~m 539 (1018)
T KOG2002|consen 462 HFRLGN-IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCM 539 (1018)
T ss_pred HHHhcC-hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHH
Confidence 888888 99999999887654 223333 12 223344445667888999999988876543 22333333323
Q ss_pred HHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHhhc-------
Q 038522 379 YAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEG-MVPNDVTFLSLLFACSH------- 447 (590)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------- 447 (590)
....+...+|...+..+. +.++..++.+...+.+...+..|.+-|....+.- ..+|..+...|.+.|..
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 333467788888888776 3567778778878888888888888776665432 23566666666665543
Q ss_pred -----cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCch
Q 038522 448 -----TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTS 520 (590)
Q Consensus 448 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~ 520 (590)
.+..++|+++|..+.+. .+-|...-+.+.-.++..|++.+|..+|.+. .......+|-.+...|...|++-
T Consensus 620 n~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 23456788888888753 3446777888888899999999999999988 22335667888999999999999
Q ss_pred HHHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 521 LGELAARNLFDME-P-EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 521 ~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
.|++.|+..++.. | +++.....|++++.+.|++.+|.+.+.......+
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 9999999998543 3 5778889999999999999999999887766444
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=2.2e-17 Score=173.05 Aligned_cols=390 Identities=9% Similarity=-0.005 Sum_probs=203.0
Q ss_pred HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchH
Q 038522 139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDD 215 (590)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 215 (590)
......|+.++|.+++....... +.+...+..+...+...|++++|.++|++..+ .+...+..+...+...|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33334444444444444444311 22333445555555555555555555555322 223344455555566666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC
Q 038522 216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK 295 (590)
Q Consensus 216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 295 (590)
|+..+++..+.. +.+.. +..+...+...|+.+.|...++++.+.. +.+...+..+..++...|..+.|+..++....
T Consensus 102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 666666665541 22233 4455555556666666666666666543 23344444556666666677777766666543
Q ss_pred CCcc--------chHHHHHHHH-----hcCCCh---HHHHHHHHHHHHc-CCCCCHH-HHHHHHHHHhchhhhHhHHHHH
Q 038522 296 TDII--------SCTALISGFA-----RDDNHS---KEAFDLFKDMILK-KMGIDDV-ILCLMLNICANVASLNLGRQIH 357 (590)
Q Consensus 296 ~~~~--------~~~~l~~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 357 (590)
++. .....+.... ..++ + ++|+..++.+.+. ...|+.. .+.
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r-~~~ad~Al~~~~~ll~~~~~~p~~~~~~~------------------- 237 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKER-YAIADRALAQYDALEALWHDNPDATADYQ------------------- 237 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHH-HHHHHHHHHHHHHHHhhcccCCccchHHH-------------------
Confidence 111 0011111110 0011 1 3445555554432 1112110 000
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---cc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522 358 AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN---VI-SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP 433 (590)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 433 (590)
......+..+...|++++|+..|+.+.+.+ +. .-..+...+...|++++|+..|+++.+. .|
T Consensus 238 ------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p 303 (765)
T PRK10049 238 ------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PE 303 (765)
T ss_pred ------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CC
Confidence 000011122334466666666666665321 11 1112345566666666666666666543 22
Q ss_pred c-----HHHHHHHHHHhhccCChHHHHHHHHHHHhhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 038522 434 N-----DVTFLSLLFACSHTGLTCEGWELFTDMINKYR----------ILPR---AEHFSCVVDLFARRGQLESAYNMIR 495 (590)
Q Consensus 434 ~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (590)
. ......+..++...|++++|.+.++.+.+... -.|+ ...+..+...+...|++++|++.++
T Consensus 304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~ 383 (765)
T PRK10049 304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR 383 (765)
T ss_pred CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 22344444556666667777766666664310 0112 1233455566777777777777777
Q ss_pred hc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 496 QM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 496 ~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
++ ...| +...+..+...+...|++++|++.++++++.+|+++..+..++..+...|++++|..+++.+.+..
T Consensus 384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 76 3233 455666777777777777777777777777777777777777777777777777777777776543
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=4e-19 Score=173.85 Aligned_cols=293 Identities=11% Similarity=0.043 Sum_probs=191.6
Q ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-CC------ccchHHHHHHHHhc
Q 038522 37 LQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE-RN------VVSWTAMISGYAQN 109 (590)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~ 109 (590)
...+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|...++.+.. |+ ...+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344556677888888888887764 44566777777788888888888887777654 21 13466777777888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCch----HHHHHHHHHHHhcCChHHH
Q 038522 110 GYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENL----FVKSALLDLYAKCGWIEDA 185 (590)
Q Consensus 110 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A 185 (590)
|++++|..+|+++.+.. +++..++..+...+.+.|++++|...++.+.+.+..+.. ..+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 88888888888877642 345667777777777888888888888877775433221 2344566666777777777
Q ss_pred HHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhC
Q 038522 186 WILFERIER--K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLG 262 (590)
Q Consensus 186 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (590)
...|+++.+ | +...+..+...+.+.|++++|.++++++...+......++..+..++...|+.++|...++.+.+..
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 777776653 2 3445666667777777777777777777655322223455666667777777777777777766653
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--CCCccchHHHHHHHHh---cCCChHHHHHHHHHHHHcCCCCCH
Q 038522 263 LESSNKLTGSLIDVYAKYGSIRSAYQLYRSML--KTDIISCTALISGFAR---DDNHSKEAFDLFKDMILKKMGIDD 334 (590)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~ 334 (590)
|+...+..++..+.+.|++++|..+++++. .|+...++.++..+.. .|+ .++++.++++|.++++.|++
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~-~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGR-AKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCcc-chhHHHHHHHHHHHHHhCCC
Confidence 444445666666777777777777666653 3555555555555443 234 56666666666665555544
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.3e-17 Score=170.89 Aligned_cols=367 Identities=11% Similarity=0.004 Sum_probs=264.7
Q ss_pred HhcCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhH
Q 038522 177 AKCGWIEDAWILFERIER------KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMK 250 (590)
Q Consensus 177 ~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 250 (590)
.+..+|+.-.-+|..-.+ .+..-...++..+.+.|++++|..+++........ +...+..++.++...|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 345556555555554443 12233455667788889999999888888776433 23344445566667888889
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--C-CccchHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038522 251 ISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T-DIISCTALISGFARDDNHSKEAFDLFKDMIL 327 (590)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 327 (590)
|...++.+.+.. +.+...+..+...+...|++++|...+++... | +...+..+...+...|+ +++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK-ELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHH
Confidence 998888888765 45566777788888888999999988888843 3 34567777888888888 8899988888765
Q ss_pred cCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHH
Q 038522 328 KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWT 404 (590)
Q Consensus 328 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 404 (590)
.. |+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...+++... .+...+.
T Consensus 173 ~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~ 250 (656)
T PRK15174 173 EV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR 250 (656)
T ss_pred hC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 53 332222222334677888888888888877765444455555567788888999999999988764 2455777
Q ss_pred HHHHHHHhcCCchH----HHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHH
Q 038522 405 SLIAGYAKHGYGHE----AIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVV 478 (590)
Q Consensus 405 ~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~ 478 (590)
.+...+...|++++ |...+++..+. .| +...+..+...+...|++++|...+++.... .|+ ...+..+.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La 325 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 78888889998885 78899988875 45 5667888888899999999999999998864 444 56677788
Q ss_pred HHHHhcCChHHHHHHHHhc-CCCCCHhH-HHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522 479 DLFARRGQLESAYNMIRQM-NIKPTASL-WSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 556 (590)
.++.+.|++++|.+.++++ ...|+... +..+..++...|++++|...++++++..|++. ...+++|
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea 393 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEG 393 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHH
Confidence 8899999999999999888 45665544 33456677888999999999999999988654 2344455
Q ss_pred HHHHHHhhh
Q 038522 557 RKTRKLMEE 565 (590)
Q Consensus 557 ~~~~~~~~~ 565 (590)
...+....+
T Consensus 394 ~~~~~~~~~ 402 (656)
T PRK15174 394 LLALDGQIS 402 (656)
T ss_pred HHHHHHHHH
Confidence 555555544
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=7.9e-17 Score=165.90 Aligned_cols=419 Identities=11% Similarity=-0.006 Sum_probs=285.3
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 038522 99 WTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAK 178 (590)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (590)
+......+.+.|++++|+..|++.++ +.|+...|..+..++.+.|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44566778889999999999999887 56788888888888999999999999999988864 3456688889999999
Q ss_pred cCChHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHH
Q 038522 179 CGWIEDAWILFERIERKD---VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIH 255 (590)
Q Consensus 179 ~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 255 (590)
.|++++|...|..+...+ ......++..... ..+........+.. +++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 999999988776554211 1111111111111 12222222222221 222222222211 11111111111111
Q ss_pred HHHHHhCCCCCh-hHHHHHHHH---HHhcCChHHHHHHHHhccCC------CccchHHHHHHHHhcCCChHHHHHHHHHH
Q 038522 256 DLIIKLGLESSN-KLTGSLIDV---YAKYGSIRSAYQLYRSMLKT------DIISCTALISGFARDDNHSKEAFDLFKDM 325 (590)
Q Consensus 256 ~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 325 (590)
....+ ..+.. ..+..+... ....+++++|.+.|+..... ....++.+...+...|+ +++|+..+++.
T Consensus 281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~-~~eA~~~~~ka 357 (615)
T TIGR00990 281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK-HLEALADLSKS 357 (615)
T ss_pred hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 11110 11111 111111111 12346788888888887532 23456667777778888 99999999988
Q ss_pred HHcCCCCC-HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-Ccc
Q 038522 326 ILKKMGID-DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVI 401 (590)
Q Consensus 326 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~ 401 (590)
++. .|+ ...|..+...+...|+++.|...++.+.+..+. ++.++..+...+...|++++|...|++..+ | +..
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 765 444 456777777888889999999999988877543 577888899999999999999999998874 3 455
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-h-------
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-E------- 472 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~------- 472 (590)
.+..+...+.+.|++++|+..+++..+. .| +...+..+...+...|++++|++.|++.... .|+. .
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~ 509 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHH
Confidence 6777888999999999999999999875 45 5778888899999999999999999998853 3321 1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
.++.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..++++.++.+...
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 1122223344579999999999997 555644 5688899999999999999999999998887433
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3.1e-17 Score=168.16 Aligned_cols=329 Identities=12% Similarity=-0.015 Sum_probs=267.4
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--C-CccchHHHHHHH
Q 038522 232 CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T-DIISCTALISGF 308 (590)
Q Consensus 232 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 308 (590)
......++..+.+.|+.+.|..+++........+ ......++.+....|++++|...|+++.. | +...+..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445567778889999999999999999876444 44455566777889999999999999943 3 445677788888
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHH
Q 038522 309 ARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADA 388 (590)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (590)
...|+ +++|...+++..... +.+...+..+...+...|+.+.|...+..+....+.+... +..+ ..+.+.|++++|
T Consensus 121 ~~~g~-~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a-~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQ-YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM-IATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCC-HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH-HHHH-HHHHHcCCHHHH
Confidence 99999 999999999998752 3345667788889999999999999999887776554333 3333 347889999999
Q ss_pred HHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHH----HHHHHHH
Q 038522 389 NRAFDEMGDK----NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCE----GWELFTD 460 (590)
Q Consensus 389 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~ 460 (590)
...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999997643 23344555678889999999999999999853 3357778888899999999986 8999999
Q ss_pred HHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 461 MINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 461 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
..+. .| +...+..+...+.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++.+..|.++
T Consensus 276 Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 9854 45 4778889999999999999999999998 44554 56677888999999999999999999999999887
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
..+..++.++...|++++|...+++..+..++
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 77777889999999999999999998886654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.2e-15 Score=156.79 Aligned_cols=441 Identities=10% Similarity=-0.012 Sum_probs=277.7
Q ss_pred HHHHHhcCChHHHHHHhccCCC--CCcc-chHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH---HHHHHhccC
Q 038522 72 IIFYAKVGDVLSARKAFDRMPE--RNVV-SWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSS---ALRACARMR 145 (590)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~ 145 (590)
+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+...+.. +...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 3345678888888888888765 4321 23377777778888888888888876 233222222 234566668
Q ss_pred chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCc--chHHHHHHHHHhcCCchHHHHHHHHH
Q 038522 146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDV--VSWNAMIGGLAMQGFNDDSFWLFRSM 223 (590)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m 223 (590)
+++.|.++++.+.+.. +.+...+..++..+...++.++|++.++++...+. ..+..++..+...++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 8888888888887764 33355556667777777888888888777765333 33322222333344554577777777
Q ss_pred HHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHH
Q 038522 224 MRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTA 303 (590)
Q Consensus 224 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 303 (590)
.+.+ +-+...+.....++.+.|-...|.++..+ .|+..+-...... +.+.|-+..+....++.. -
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~-~-- 260 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS-E-- 260 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-c--
Confidence 7663 22444455556666666666666555443 1221111111000 111122222111111000 0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHH
Q 038522 304 LISGFARDDNHSKEAFDLFKDMILK-KMGIDD-VIL----CLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALID 377 (590)
Q Consensus 304 l~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 377 (590)
-..+. . .+.|+.-++.+... +-.|.. ..| .-.+-++...+++..+...++.+...+.+....+-..+.+
T Consensus 261 -~~r~~---~-~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 261 -TERFD---I-ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred -hhhHH---H-HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 00000 1 45666666666542 222322 222 2345577788889999999999988887766778888999
Q ss_pred HHHhcCChHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CC--cH
Q 038522 378 MYAKSGEIADANRAFDEMGDKN---------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-----------VP--ND 435 (590)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~ 435 (590)
+|...+++++|..+|.++..++ ......|.-++...+++++|..+++++.+.-. .| |-
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 9999999999999999875321 12246678888889999999999999887311 12 22
Q ss_pred HH-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHH
Q 038522 436 VT-FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGA 512 (590)
Q Consensus 436 ~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 512 (590)
.. +..++..+...|++.+|++.++++... -+-|......+.+.+...|.+.+|++.++.. ...|+ ..+....+.+
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 22 334556677888889999988888753 3446778888888888889999998888776 55664 3455667777
Q ss_pred HHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522 513 CSIYGNTSLGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~ 539 (590)
+...+++.+|..+.+.+.+..|+++..
T Consensus 494 al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 778888888888888888888877644
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.83 E-value=2.8e-14 Score=134.30 Aligned_cols=471 Identities=10% Similarity=-0.015 Sum_probs=363.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHH----HhcCCCCchHHHHHHHHHHH
Q 038522 102 MISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSI----QKGRFVENLFVKSALLDLYA 177 (590)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 177 (590)
|.-++.+..-++.|..+++..++. ++-+...|.+....--..|+.+....++..- ...|+..+...|..=...+-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 334555666677777777777664 6667777776666666677777777665543 33567777777766666666
Q ss_pred hcCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHH
Q 038522 178 KCGWIEDAWILFERIER------KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKI 251 (590)
Q Consensus 178 ~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 251 (590)
..|..-.+..+...+.. .-..+|..-...|.+.+-++-|..+|....+. .+-+...+......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 66766666666555432 23456777788888888888888888887764 233444555555555667888999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCC---CccchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038522 252 SQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT---DIISCTALISGFARDDNHSKEAFDLFKDMILK 328 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 328 (590)
..+++.....- +.....+......+-..|++..|..++....+. +...|-.-+.....+.+ ++.|..+|.+...
T Consensus 570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e-~eraR~llakar~- 646 (913)
T KOG0495|consen 570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDE-LERARDLLAKARS- 646 (913)
T ss_pred HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHHHHhc-
Confidence 99999988764 455667777778888899999999999988543 34567777777788888 9999999998875
Q ss_pred CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHH
Q 038522 329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTS 405 (590)
Q Consensus 329 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ 405 (590)
..|+...|.--+..--..++.++|.++++...+.-+. -...|..+...+.+.++++.|...|..-.+ | .+..|-.
T Consensus 647 -~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 647 -ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL 724 (913)
T ss_pred -cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence 4677777777777777788999999999887775433 467788888999999999999999987765 4 4457777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG 485 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (590)
|...--+.|++-.|..++++..-.+ +-+...|...++.-.+.|+.+.|..+..+..+. .+.+...|..-|....+.+
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcc
Confidence 8888888899999999999988762 347788888999999999999999999998874 4455677888888888888
Q ss_pred ChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 486 QLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 486 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+-..+.+.+++.. -|+...-.+...+....++++|..-|+++++.+|++..+|..+...+...|.-++-.+++.....
T Consensus 802 rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 802 RKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred cchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 8888888888874 35566777788888999999999999999999999999999999999999999999999998766
Q ss_pred cCCccCCCceEEeecCccccc
Q 038522 566 RSLRKNPGYSFLQSSKKNILL 586 (590)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~ 586 (590)
.. |.-|..|..+++++.+.
T Consensus 880 ~E--P~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 880 AE--PTHGELWQAVSKDIKNW 898 (913)
T ss_pred cC--CCCCcHHHHHhhhHHhc
Confidence 44 67789999999887543
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=4e-16 Score=139.26 Aligned_cols=421 Identities=14% Similarity=0.175 Sum_probs=267.6
Q ss_pred cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHH--hcCChHHH-HHHhccC---------------
Q 038522 30 PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYA--KVGDVLSA-RKAFDRM--------------- 91 (590)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a-~~~~~~~--------------- 91 (590)
+.+=+.+++.. ..|.+.++.-+++.|.+.|++.++..-..|...-+ ...++--| .+.|-.|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 33555565543 45677778888888888887777766655554322 22221111 1222222
Q ss_pred --------CCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCC
Q 038522 92 --------PERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFV 163 (590)
Q Consensus 92 --------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 163 (590)
...+..+|..+|.++++--..+.|.+++++-.+...+.+..+||.+|.+-.- ...++++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 2234567778888888877778888888887777777788888887776432 2226777777777777
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 038522 164 ENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASV 243 (590)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 243 (590)
||..|+|+++.+..+.|+++.|.. .|++++.+|++-|+.|...+|..+|..++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~ 323 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFK 323 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence 887777777777777777765543 35677888888888888888888888888
Q ss_pred cCCChhH-HHHHHHHHHHh--C--C----CCChhHHHHHHHHHHhcCChHHHHHHHHhccC--------C---CccchHH
Q 038522 244 GGIELMK-ISQIHDLIIKL--G--L----ESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--------T---DIISCTA 303 (590)
Q Consensus 244 ~~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~ 303 (590)
+.++..+ +..++.++... | + +.|...|..-|..|.+..+.+-|.++-.-+.. + ...-|..
T Consensus 324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~ 403 (625)
T KOG4422|consen 324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK 403 (625)
T ss_pred ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence 7777644 44444444431 1 2 23445666777777788887777776554421 1 1234566
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 038522 304 LISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG 383 (590)
Q Consensus 304 l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (590)
+....++... .+..+..|+.|+-.-+.|++.+...++++....+.++...++|..++..|.........-++..+++..
T Consensus 404 ~~~licq~es-~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 404 FFDLICQMES-IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred HHHHHHHHHH-HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 7777777777 899999999999888899999999999999999999999999999999886655554444444444322
Q ss_pred ChHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHH-HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522 384 EIADANRAFDEMGDKNVISWTSLIAGYAKH-GYGHEA-IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM 461 (590)
Q Consensus 384 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 461 (590)
- .|+...-..+-....+. -++.++ ...-.+|.+... .....+.++-.+.+.|..++|.+++..+
T Consensus 483 ~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~ 548 (625)
T KOG4422|consen 483 L------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLF 548 (625)
T ss_pred C------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence 0 12211111111111110 011121 222334454433 3444555566678888999999988888
Q ss_pred HhhcCCCCChhHHHHH---HHHHHhcCChHHHHHHHHhc
Q 038522 462 INKYRILPRAEHFSCV---VDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 462 ~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~ 497 (590)
.++++-.|.....+++ ++.-.+.+++-.|...++-|
T Consensus 549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7664444555555544 34445566667777666665
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=3.4e-15 Score=153.43 Aligned_cols=434 Identities=10% Similarity=0.035 Sum_probs=251.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 038522 106 YAQNGYDENALLVFSAMLRSGVRANQ--FTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIE 183 (590)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (590)
..+.|+++.|+..|++..+. .|+. ..+ .++..+...|+.++|...++..... -+........+...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 35777777777777777664 3443 233 6666666667777777777777621 1222333333455777777777
Q ss_pred HHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHH
Q 038522 184 DAWILFERIER--K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIK 260 (590)
Q Consensus 184 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 260 (590)
+|.++|+++.+ | +...+..++..+...++.++|++.++++... .|+...+..+...+...++..+|.+.++++.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77777777764 2 3445556666777777777777777777655 45555554444444445555557777777777
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH---HHH
Q 038522 261 LGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD---VIL 337 (590)
Q Consensus 261 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~ 337 (590)
.. +.+...+..++.+..+.|-...|.++.++-+ +..+-..... . . .+.+.+..+. +..++. .-|
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~--l---~-~~~~a~~vr~----a~~~~~~~~~r~ 264 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ--L---E-RDAAAEQVRM----AVLPTRSETERF 264 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH--H---H-HHHHHHHHhh----cccccccchhhH
Confidence 64 5556666777777777777777777666543 1111111100 0 0 1111111111 111110 011
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHH-hCCCcc-----hhHHHHHHHHHHhcCChHHHHHHHHhcCCCC----cchHHHHH
Q 038522 338 CLMLNICANVASLNLGRQIHAFAFK-YQSSYD-----AAVGNALIDMYAKSGEIADANRAFDEMGDKN----VISWTSLI 407 (590)
Q Consensus 338 ~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~ 407 (590)
..+ +.+..-++.+.. .+..|. ....--.+-++...|++.++++.|+.+..+. ..+-..+.
T Consensus 265 ~~~----------d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 265 DIA----------DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred HHH----------HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 111 122222222222 111111 1111123345566677777777777777322 22445567
Q ss_pred HHHHhcCCchHHHHHHHHHHHcC-----CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC----------CCCC--
Q 038522 408 AGYAKHGYGHEAIELYKKMKHEG-----MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR----------ILPR-- 470 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~-- 470 (590)
.+|...+++++|..+++++.... ..++......|..++...+++++|..+++.+.+... -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 77777777777777777775532 122333345677777777777777777777765211 0122
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 471 -AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 471 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
...+..++..+...|++.+|++.++++ ...| |......+...+...|.+..|++.++.+..++|.+..+...++.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 233444566677777777777777777 3333 5666677777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHhhhcCC
Q 038522 548 TAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 548 ~~~g~~~~A~~~~~~~~~~~~ 568 (590)
...|+|.+|.++.+.+.+..+
T Consensus 495 l~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCC
Confidence 777777777777766655433
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.7e-16 Score=163.87 Aligned_cols=405 Identities=10% Similarity=0.008 Sum_probs=233.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038522 62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL 138 (590)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 138 (590)
+.++....-.+.+....|+.++|++++..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34444455556667778888888888887654 233347777788888888888888888877642 23355566666
Q ss_pred HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCCchH
Q 038522 139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQGFNDD 215 (590)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~ 215 (590)
..+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 67777888888888888887763 33444 76777777778888888888877764 3 33445556666777777777
Q ss_pred HHHHHHHHHHcCCCCChh------hHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHH
Q 038522 216 SFWLFRSMMRQGMKPDCF------TLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI---RSA 286 (590)
Q Consensus 216 a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a 286 (590)
|++.++.... .|+.. ....++..... ......+++ ++|
T Consensus 169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~A 215 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRA 215 (765)
T ss_pred HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHH
Confidence 7777765543 23210 00000110000 000111122 445
Q ss_pred HHHHHhccC---CCccc---hH----HHHHHHHhcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhchhhhHhHHH
Q 038522 287 YQLYRSMLK---TDIIS---CT----ALISGFARDDNHSKEAFDLFKDMILKKMG-IDDVILCLMLNICANVASLNLGRQ 355 (590)
Q Consensus 287 ~~~~~~~~~---~~~~~---~~----~l~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~ 355 (590)
++.++.+.. .++.. +. ..+..+...++ +++|+..|+.+.+.+.. |+. ....
T Consensus 216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~-~~eA~~~~~~ll~~~~~~P~~-a~~~---------------- 277 (765)
T PRK10049 216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDR-YKDVISEYQRLKAEGQIIPPW-AQRW---------------- 277 (765)
T ss_pred HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhccCCCCCHH-HHHH----------------
Confidence 555554431 11111 10 11233445556 77777777777655421 221 1111
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 356 IHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN-------VISWTSLIAGYAKHGYGHEAIELYKKMKH 428 (590)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 428 (590)
+..+|...|++++|+..|+++.+.+ ...+..+..++...|++++|...++++.+
T Consensus 278 -------------------la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 278 -------------------VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred -------------------HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 2233444444444444444433211 11223333344555555555555555544
Q ss_pred cC-----------CCCcH---HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 038522 429 EG-----------MVPND---VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMI 494 (590)
Q Consensus 429 ~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (590)
.. -.|+. ..+..+...+...|++++|++.++++... .+.+...+..+...+...|++++|++.+
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 31 12331 23445566677778888888888887754 2334667777777788888888888888
Q ss_pred Hhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522 495 RQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV 541 (590)
Q Consensus 495 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 541 (590)
++. ...|+ ...+...+..+...|++++|+..++++++..|+++.+..
T Consensus 417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 877 55564 445555666677778888888888888888886665433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=5.2e-17 Score=145.83 Aligned_cols=480 Identities=14% Similarity=0.059 Sum_probs=298.7
Q ss_pred cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhH-HHHHHHHHHhcCChHHHHHHhccCCC--CC------ccchHHH
Q 038522 32 TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHL-STKVIIFYAKVGDVLSARKAFDRMPE--RN------VVSWTAM 102 (590)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~l 102 (590)
.+..|.+-|.......+|+..++-+++...-|+.-. -..+.+.+.+.+.+.+|++.++.... |+ +...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 444455566666677788888888777665555433 33455667788888888887765433 22 1233344
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 103 ISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
--.+.+.|+++.|+..|+...+. .|+-.+-..++-++...|+-+...+.|..|+.....||..-| .+..+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~~d- 352 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKEKD- 352 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCCcC-
Confidence 44567788888888888887764 477666555555556667888888888888775444433211 11000
Q ss_pred HHHHHHHhccCCCCcchHHHHH-----HHHHhcC--CchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHH
Q 038522 183 EDAWILFERIERKDVVSWNAMI-----GGLAMQG--FNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQI 254 (590)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 254 (590)
.|+....+.-| +-.-+.+ +.++++-.-.++..--+.|+-. .|...+..+-.....+.|.
T Consensus 353 -----------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~-- 419 (840)
T KOG2003|consen 353 -----------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI-- 419 (840)
T ss_pred -----------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh--
Confidence 01111111111 1111110 1112222222222211222211 1111111111111111111
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHH-----HHHHHHhcCCChHHHHHHHHHHHHcC
Q 038522 255 HDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTA-----LISGFARDDNHSKEAFDLFKDMILKK 329 (590)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~a~~~~~~~~~~~ 329 (590)
+..+ .-..-+.+.|+++.|.++++-..+.|..+-.+ -.--|.+.|+++..|.++-+..+...
T Consensus 420 -----------dlei--~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d 486 (840)
T KOG2003|consen 420 -----------DLEI--NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID 486 (840)
T ss_pred -----------hhhh--hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence 1110 11223667777777777777665544333222 22233344444556655555444221
Q ss_pred CCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHH
Q 038522 330 MGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSL 406 (590)
Q Consensus 330 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 406 (590)
.-+......--......|++++|...++.............||.=+ .+...|++++|+..|-++. ..+....-.+
T Consensus 487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qi 564 (840)
T KOG2003|consen 487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQI 564 (840)
T ss_pred -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1222222222223345678888888888877766555555555333 4567899999999998775 4677777778
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
...|-...++..|++++-+.... ++.|+..+..|...|-+.|+-..|.+.+-+-.+ -++.+..+...|...|....-
T Consensus 565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHH
Confidence 88899999999999999887764 444788999999999999999999987766554 456689999999999999999
Q ss_pred hHHHHHHHHhc-CCCCCHhHHHHHHHHHH-hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522 487 LESAYNMIRQM-NIKPTASLWSAILGACS-IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 487 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 552 (590)
+++|+.+|++. -+.|+..-|..++..|. +.|++.+|...|+.+.+..|.+...+..|.+++...|.
T Consensus 642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999998 78899999999998875 67999999999999999999999999999999988875
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.9e-14 Score=128.66 Aligned_cols=418 Identities=13% Similarity=0.108 Sum_probs=279.2
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC--chh-hHHHHHHHHHhcCCCCchHHHHHH
Q 038522 96 VVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMR--WLQ-GGRMIQGSIQKGRFVENLFVKSAL 172 (590)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~-~a~~~~~~~~~~~~~~~~~~~~~l 172 (590)
+.+=|.|++. ..+|....+.-+|+.|...|+..+...-..+++..+-.+ ++- .-.+.|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 3455666654 567889999999999999998888887777777643222 222 11223333333331 111111
Q ss_pred HHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHH
Q 038522 173 LDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKIS 252 (590)
Q Consensus 173 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 252 (590)
+.|... . ++-+..-.+..++..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+.+-..+ .
T Consensus 191 -----K~G~vA--d-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K 258 (625)
T KOG4422|consen 191 -----KSGAVA--D-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K 258 (625)
T ss_pred -----ccccHH--H-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence 233332 2 333333345667888888888888888888888888777778888888888776443222 6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH----HHhc----cCCCccchHHHHHHHHhcCCChHHHHHHHHH
Q 038522 253 QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL----YRSM----LKTDIISCTALISGFARDDNHSKEAFDLFKD 324 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 324 (590)
+++.+|.+..+.||..|+|+++.+..+.|+++.|... +.+| ++|...+|..+|..+++.+++.+.+..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 7778888888888888888888888888877665544 3333 5677778888888888877744556666666
Q ss_pred HHHc----CCCC----CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhC----CCcc---hhHHHHHHHHHHhcCChHHHH
Q 038522 325 MILK----KMGI----DDVILCLMLNICANVASLNLGRQIHAFAFKYQ----SSYD---AAVGNALIDMYAKSGEIADAN 389 (590)
Q Consensus 325 ~~~~----~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~ 389 (590)
+... .++| |...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+..+.|+....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5542 2222 44667788999999999999999887775422 2222 233456777888889999999
Q ss_pred HHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC-Ch---H-----H---
Q 038522 390 RAFDEMGD----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG-LT---C-----E--- 453 (590)
Q Consensus 390 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~---~-----~--- 453 (590)
..|+.|.. |+..+...++++..-.|+++-.-++|..++..|...+.....-++..+++.. .. + .
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 99999873 6777888888888889999999999999998876555554444444444433 11 0 0
Q ss_pred --HHHHH-------HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-------CCCCCHhHHHHHHHHHHhcC
Q 038522 454 --GWELF-------TDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-------NIKPTASLWSAILGACSIYG 517 (590)
Q Consensus 454 --a~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~ 517 (590)
|..++ .++. ..+-.....+...-.+.|.|+.++|.+++.-. +..|.......++.+....+
T Consensus 499 k~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 499 KCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 11111 1122 23344566777777888999999998888665 23444445556777777888
Q ss_pred CchHHHHHHHHHhcCC
Q 038522 518 NTSLGELAARNLFDME 533 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~ 533 (590)
....|...++-+...+
T Consensus 576 spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 576 SPSQAIEVLQLASAFN 591 (625)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 8888888888886544
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.77 E-value=7.1e-14 Score=136.76 Aligned_cols=559 Identities=13% Similarity=0.068 Sum_probs=349.1
Q ss_pred cccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522 8 FKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86 (590)
Q Consensus 8 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 86 (590)
.-.|+.++|.+++..+ ...+....+|..|..++-.+|+..++...+-.+-... +.|...|..+.....+.|.++.|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 3349999999999999 8888889999999999999999999988776655554 5677899999999999999999999
Q ss_pred HhccCCCCCccchH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH----HHHHhccCchhhHHHHHHHHHh
Q 038522 87 AFDRMPERNVVSWT---AMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSA----LRACARMRWLQGGRMIQGSIQK 159 (590)
Q Consensus 87 ~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~ 159 (590)
.|.+..+.++.-|. .-...|-+.|+...|.+-|.++.....+.|..-+..+ ++.+...++-+.|.+.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998874444343 4456788999999999999999886433333333333 4445566666888888887766
Q ss_pred c-CCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC----C----------------------CcchHH----HHHHHHH
Q 038522 160 G-RFVENLFVKSALLDLYAKCGWIEDAWILFERIER----K----------------------DVVSWN----AMIGGLA 208 (590)
Q Consensus 160 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----------------------~~~~~~----~li~~~~ 208 (590)
. +-..+...++.++..|.+...++.|......... + +..+|+ -+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 3345566788888889999888888877654432 1 111121 1222333
Q ss_pred hcCCchHHHHHHHHHHHcCCCC--ChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 038522 209 MQGFNDDSFWLFRSMMRQGMKP--DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSA 286 (590)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 286 (590)
.....+...-+.....+.++.| +...|.-+..++...|++..|..++..+......-+..+|-.+.++|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4444444444445555555333 45567888889999999999999999998876666678888899999999999999
Q ss_pred HHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHhchhhhHhHHH
Q 038522 287 YQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMIL--------KKMGIDDVILCLMLNICANVASLNLGRQ 355 (590)
Q Consensus 287 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 355 (590)
.+.|+.+....+ ..--.|-..+.+.|+ .++|.+.+..+.. .+..|+..........+...|+.++-..
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999998854333 334445566777888 8999999888542 2344444445555556666666665554
Q ss_pred HHHHHHHhCCC----------------------cchhHHHHHHHHHHhcCChHHHHHHHHhc--------CCCCc----c
Q 038522 356 IHAFAFKYQSS----------------------YDAAVGNALIDMYAKSGEIADANRAFDEM--------GDKNV----I 401 (590)
Q Consensus 356 ~~~~~~~~~~~----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~----~ 401 (590)
+...++..... ........++.+-.+.++......-...- ..-.. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 44433321110 00111111111111111111111100000 00011 1
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHH---H-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC---hhH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDV---T-FLSLLFACSHTGLTCEGWELFTDMINKYRILPR---AEH 473 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~---~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 473 (590)
.+.-++.++++.+++++|+.+...+.....-- +.. . -...+.++...+++..|...++.|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 22334556666666677766666665432111 111 1 123334455666666666666666554332222 122
Q ss_pred HHHHH-----------------------------------HHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHH-HHH--
Q 038522 474 FSCVV-----------------------------------DLFARRGQLESAYNMIRQM-NIKPTASLWSAILG-ACS-- 514 (590)
Q Consensus 474 ~~~l~-----------------------------------~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~-- 514 (590)
|+... ..+...+.+..|+..+-+. ...|+.+..+..+. ++.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 22111 1223345667777766665 45566544443332 211
Q ss_pred --------hcCCchHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 515 --------IYGNTSLGELAARNLFDMEPE--KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 515 --------~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
++-.+-++..++++-.++.-. ...+.++++++|...|-..-|..++++..+-.+
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 223445667777777665542 567889999999999999999999999987643
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=3.6e-13 Score=131.94 Aligned_cols=531 Identities=10% Similarity=0.058 Sum_probs=369.2
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccC---CCCCccchHHHHHHHHhc
Q 038522 33 YMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRM---PERNVVSWTAMISGYAQN 109 (590)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~ 109 (590)
...........|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-.. ...|...|-.+.......
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 3344444555699999999999999986 678899999999999999999998766443 335667898999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHhcCChHHH
Q 038522 110 GYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKS----ALLDLYAKCGWIEDA 185 (590)
Q Consensus 110 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A 185 (590)
|++++|.-+|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-.. ..+..+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999864 2343333344556788999999999999999875444433333 335566677777888
Q ss_pred HHHHhccCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh----------------------hhH---
Q 038522 186 WILFERIER-----KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDC----------------------FTL--- 235 (590)
Q Consensus 186 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------------~~~--- 235 (590)
.+.++.... -+...++.++..+.+...++.+......+......+|. ..|
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 888877654 24566889999999999999999998888762222221 111
Q ss_pred -HHHHHHhccCCChhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccC----CCccchHHHHHHH
Q 038522 236 -GSILRASVGGIELMKISQIHDLIIKLG--LESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK----TDIISCTALISGF 308 (590)
Q Consensus 236 -~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~ 308 (590)
..++-++......+....+........ +.-+...|.-+..+|...|++..|+.+|..+.. .+...|-.+...+
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 233445566677777777777777777 444567889999999999999999999999953 2456788888999
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchhhhHhHHHHHHHHHH--------hCCCcchhHHHHHHHHH
Q 038522 309 ARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVASLNLGRQIHAFAFK--------YQSSYDAAVGNALIDMY 379 (590)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~ 379 (590)
...+. +++|...|...+.. .|+. ..-.++-..+...|+.++|.+.+..+.. .+..|...+.......+
T Consensus 460 ~~l~e-~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 460 MELGE-YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHhh-HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999 99999999999865 4543 3444566667789999999999888542 34556667777777888
Q ss_pred HhcCChHHHHHHHHhcCC---------C-----------------CcchHHHHHHHHHhcCCchHHHHHH------HHHH
Q 038522 380 AKSGEIADANRAFDEMGD---------K-----------------NVISWTSLIAGYAKHGYGHEAIELY------KKMK 427 (590)
Q Consensus 380 ~~~~~~~~A~~~~~~~~~---------~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~------~~m~ 427 (590)
.+.|+.++-..+-..|.. | +..+...++.+-.+.++......-. .--.
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 888988776555544431 1 1111222333333333322111111 1111
Q ss_pred HcCCCCcH--HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChh----HHHHHHHHHHhcCChHHHHHHHHhc----
Q 038522 428 HEGMVPND--VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAE----HFSCVVDLFARRGQLESAYNMIRQM---- 497 (590)
Q Consensus 428 ~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~---- 497 (590)
..|+.-+. ..+.-++.++.+.+++++|..+...+...+-+..+.. .-...+.+....+++..|.+.++.+
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22333322 3456677788899999999999999887643333333 2234456677889999999999888
Q ss_pred C--CCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 498 N--IKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-SVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 498 ~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+ ..|. ...|+...+...+.++-.--......+....|++ +..+...+......+.|..|++.+-.+-..++
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p 771 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP 771 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence 1 1332 3456655666666666666666666666666766 55566667778888888888887766655543
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=3.1e-12 Score=120.82 Aligned_cols=486 Identities=13% Similarity=0.087 Sum_probs=380.6
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHH
Q 038522 43 KKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVF 119 (590)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~ 119 (590)
..+.+.|..++....+. ++.+...|.+ |++..-++.|.++++...+ .+...|-+-...--.+|+.+...+++
T Consensus 389 lE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 389 LEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred ccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 34555577777777765 3445555544 4555667888888877665 45667777666667889988888877
Q ss_pred HH----HHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCC--chHHHHHHHHHHHhcCChHHHHHHHhccC
Q 038522 120 SA----MLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVE--NLFVKSALLDLYAKCGWIEDAWILFERIE 193 (590)
Q Consensus 120 ~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 193 (590)
++ +...|+..+...|..=...|-..|..-.+..+....+.-|++. -..+|..-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 65 4557899999999988888999999999999999998888754 35688888999999999999999998876
Q ss_pred C---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHH-HHHHhccCCChhHHHHHHHHHHHhCCCCChhH
Q 038522 194 R---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGS-ILRASVGGIELMKISQIHDLIIKLGLESSNKL 269 (590)
Q Consensus 194 ~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 269 (590)
+ .+...|...+..--..|..++...+|++.... .|....+-. .....-..|++..|..++....+.. +.+..+
T Consensus 544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei 620 (913)
T KOG0495|consen 544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI 620 (913)
T ss_pred hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence 5 35567888777777889999999999999876 454444433 3344556799999999999998876 448889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc--CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc
Q 038522 270 TGSLIDVYAKYGSIRSAYQLYRSML--KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICAN 346 (590)
Q Consensus 270 ~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~ 346 (590)
+-.-+..-....+++.|..+|.+.. .++...|..-+...--.++ .++|++++++.++. -|+- ..|..+-+.+.+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~-~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN-VEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh-HHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 9999999999999999999999884 4566677666665556677 99999999988865 5554 556667777888
Q ss_pred hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHH
Q 038522 347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELY 423 (590)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 423 (590)
.++++.|...|..-.+.- +..+..+-.|...-.+.|.+-+|..+++...- .|...|-..|+.-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 889998888776544432 34677888888888999999999999998763 36678999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC
Q 038522 424 KKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT 502 (590)
Q Consensus 424 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 502 (590)
.+..+. ++-+...|.--|...-+.++-......+++. ..|+.+.-.+...+....++++|.+.|.+. ...||
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 998886 4446667777776666666655555444433 456777888889999999999999999998 66665
Q ss_pred -HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 503 -ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 503 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
-.+|..+...+..+|.-++-.+++.+...-+|.....|.....--
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 468888999999999999999999999999998888887776543
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=8.9e-12 Score=113.36 Aligned_cols=459 Identities=12% Similarity=0.073 Sum_probs=275.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHHH
Q 038522 62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF-TYSSA 137 (590)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l 137 (590)
..+...|..-.+.-..++++..|..+|+.... .+...|--.+..=.++.....|..++++.... -|.+. .|---
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 34455555555555567778888888888765 56666777777778888888888888888763 34332 23333
Q ss_pred HHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchH
Q 038522 138 LRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIE--RKDVVSWNAMIGGLAMQGFNDD 215 (590)
Q Consensus 138 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~ 215 (590)
+-.--..|++..|.++|+.-.+ .+|+...|.+.++.-.+.+.++.|..++++.. .|++.+|--..+.-.+.|+...
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH
Confidence 3334456788888888887766 47888888888888888888888888888765 5788888888887788888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHh----ccCCChhHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHH
Q 038522 216 SFWLFRSMMRQGMKPDCFTLGSILRAS----VGGIELMKISQIHDLIIKLGLESS--NKLTGSLIDVYAKYGSIRSAYQL 289 (590)
Q Consensus 216 a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 289 (590)
|..+|+...+. ..|...--.+..++ .+...++.|.-+|+-.+++= +.+ ...|..+...=-+-|+-....+.
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 88888776653 22232222333333 34556677777777666542 222 23444444444444554433332
Q ss_pred H--------HhccCCCcc---chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhchhhhHhHHHH
Q 038522 290 Y--------RSMLKTDII---SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDV--ILCLMLNICANVASLNLGRQI 356 (590)
Q Consensus 290 ~--------~~~~~~~~~---~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~ 356 (590)
. +.++..|+. +|--.+......|+ .+...++|++.+.. ++|-.. .+
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~-~~~Ire~yErAIan-vpp~~ekr~W------------------- 361 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD-KDRIRETYERAIAN-VPPASEKRYW------------------- 361 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC-HHHHHHHHHHHHcc-CCchhHHHHH-------------------
Confidence 2 122222222 22223333333444 55555555555533 222110 00
Q ss_pred HHHHHHhCCCcchhHHHHHHH---HHHhcCChHHHHHHHHhcCC--C-CcchHHH----HHHHHHhcCCchHHHHHHHHH
Q 038522 357 HAFAFKYQSSYDAAVGNALID---MYAKSGEIADANRAFDEMGD--K-NVISWTS----LIAGYAKHGYGHEAIELYKKM 426 (590)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~----l~~~~~~~~~~~~a~~~~~~m 426 (590)
-..+|.-+=- .-....+++.+.++|+...+ | ...||.- ...-..++.+...|.+++...
T Consensus 362 -----------~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 362 -----------RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred -----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0011111100 11234566677777766553 2 2233333 233344667778888888776
Q ss_pred HHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHh-
Q 038522 427 KHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTAS- 504 (590)
Q Consensus 427 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~- 504 (590)
+ |..|...+|...|..-.+.++++.+..++++..+ ..| +..+|......=...|+.+.|..+|.-+-..|...
T Consensus 431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm 505 (677)
T KOG1915|consen 431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM 505 (677)
T ss_pred h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence 6 5578778888888777788888888888888874 344 46677777777777788888888887773344333
Q ss_pred ---HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH-----hcC-----------ChHHHHHHHHHhhh
Q 038522 505 ---LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT-----AAG-----------AWDNARKTRKLMEE 565 (590)
Q Consensus 505 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 565 (590)
.|...+.--...|.+++|..+|+++++..+ +...|.+.+..-. ..| ....|.++|+....
T Consensus 506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 344444444467788888888888887777 4446666655443 233 44566666666533
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=8.5e-12 Score=113.49 Aligned_cols=482 Identities=10% Similarity=0.045 Sum_probs=218.2
Q ss_pred CChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 038522 11 GQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFD 89 (590)
Q Consensus 11 g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (590)
+++..|..+|+++ .....+...|...+..-.+...+..|..+++..+..= +.-...|-.-+..--..|++..|..+|+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3444555556555 3344444455555555555555666666666555542 1122223333333334455566666665
Q ss_pred cCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhc-C-CCCc
Q 038522 90 RMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKG-R-FVEN 165 (590)
Q Consensus 90 ~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~ 165 (590)
.-.+ |+..+|++.|+.=.+.+..+.|..++++..- +.|+..+|.--.+---+.|+...+..+++..++. | -..+
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 5332 5555666666655555556666666655543 3455555555555555555555555555555442 1 0111
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC--hhhHHHHHHHhc
Q 038522 166 LFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD--CFTLGSILRASV 243 (590)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~ 243 (590)
...+.+....-.++..++.|..+ |+-..+. ++-+ ...|.....-=-
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~i-------------------------------ykyAld~-~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFI-------------------------------YKYALDH-IPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHh-cCcccHHHHHHHHHHHHH
Confidence 22233333333333444444444 4433332 1111 112222222222
Q ss_pred cCCChhHHHHH--------HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc-----cchHH-------
Q 038522 244 GGIELMKISQI--------HDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI-----ISCTA------- 303 (590)
Q Consensus 244 ~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~------- 303 (590)
+-|+....++. ++.+++.+ +-|-.+|--.++.-...|+.+...++|+..+..-+ ..|.-
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin 370 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN 370 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence 23332222221 22233222 44555555566666666666666666666532111 01111
Q ss_pred -HHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522 304 -LISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS 382 (590)
Q Consensus 304 -l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (590)
.+-.-....+ ++.+.++++..++. ++-...||.-+--.+ ...-.++
T Consensus 371 YalyeEle~ed-~ertr~vyq~~l~l-IPHkkFtFaKiWlmy-------------------------------A~feIRq 417 (677)
T KOG1915|consen 371 YALYEELEAED-VERTRQVYQACLDL-IPHKKFTFAKIWLMY-------------------------------AQFEIRQ 417 (677)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHhh-cCcccchHHHHHHHH-------------------------------HHHHHHH
Confidence 1111123345 77777777777752 333445554332222 1222233
Q ss_pred CChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHH
Q 038522 383 GEIADANRAFDEMG--DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFT 459 (590)
Q Consensus 383 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 459 (590)
.++..|.+++.... -|...+|...|..-.+.++++.+..++++.++- .| |..+|......-...|+.+.|..+|+
T Consensus 418 ~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 418 LNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred cccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44444444444333 133344444444444555555555555555543 33 44555555544445555555555555
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHH-----hcC-----------CchHH
Q 038522 460 DMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACS-----IYG-----------NTSLG 522 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~~-----------~~~~a 522 (590)
-..+...+......|.+.|+.=...|.+++|..+++++ ...+...+|-++..--. ..+ +...|
T Consensus 496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~A 575 (677)
T KOG1915|consen 496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRA 575 (677)
T ss_pred HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHH
Confidence 55543222222333444444445555555555555555 22333334444332211 122 45567
Q ss_pred HHHHHHHhc----CCCCC--cchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522 523 ELAARNLFD----MEPEK--SVNYVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 523 ~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
..+|+++.. ..|.. ...+..+-..-...|.-.+...+-..|
T Consensus 576 R~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 576 RKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 777777663 23311 122233333334445554544444444
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=9.1e-13 Score=128.55 Aligned_cols=533 Identities=11% Similarity=0.019 Sum_probs=298.0
Q ss_pred CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHH
Q 038522 24 PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMI 103 (590)
Q Consensus 24 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li 103 (590)
.|+.|+..+|..++..|+..|+.+.|- +|.-|.-...+-+...++.++....++++.+.+. +|...+|..|.
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll 90 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL 90 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence 688999999999999999999999888 9999988877788888999999888888877775 78889999999
Q ss_pred HHHHhcCChHHHHHHHHH-H---H----HcCCCCCHhhHHHHHHH--------------HhccCchhhHHHHHHHHHhc-
Q 038522 104 SGYAQNGYDENALLVFSA-M---L----RSGVRANQFTYSSALRA--------------CARMRWLQGGRMIQGSIQKG- 160 (590)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~-m---~----~~~~~p~~~~~~~ll~~--------------~~~~~~~~~a~~~~~~~~~~- 160 (590)
.+|...||... ++..++ | . ..|+.--..-+-..+++ ..-.|-++.+.+++..+-..
T Consensus 91 ~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 91 KAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99999999765 222222 2 1 12322111111111111 11222222222222221110
Q ss_pred CCCCchHHHHHHHHHHH-hcCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522 161 RFVENLFVKSALLDLYA-KCGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI 238 (590)
Q Consensus 161 ~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 238 (590)
...|..+ .++-.. ....+++-....+...+ ++..+|..++.+-..+|+.+.|..++.+|++.|++.+..-|..+
T Consensus 170 ~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 170 WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred ccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 0011111 122111 12234444444444444 88999999999999999999999999999999999998888888
Q ss_pred HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCcc----chHHHHHHHHhcCC-
Q 038522 239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDII----SCTALISGFARDDN- 313 (590)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~- 313 (590)
+-+ .++...++.+++-|...|+.|+..|+...+..+.+.|....+.. ..+.+.. .+..+..+......
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e----~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE----GSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc----ccchhhhhhHHHHHHHhcccHhHHHH
Confidence 766 88889999999999999999999999888877777555222221 1111111 12222222111111
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc---chhHHHHHHHHHHhcCChHH
Q 038522 314 ---HSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY---DAAVGNALIDMYAKSGEIAD 387 (590)
Q Consensus 314 ---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 387 (590)
...-....+++..-.|+......|..... ....|.-+..+++...+....... ++..+..++.-|.+.-+..-
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~ 397 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI 397 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence 01112222233222344333333332222 223566666666666554432221 23333333333332111000
Q ss_pred HHHHHH--hcCCCC--cchHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCC-------cHHHHHHHHHHhhccCChH
Q 038522 388 ANRAFD--EMGDKN--VISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVP-------NDVTFLSLLFACSHTGLTC 452 (590)
Q Consensus 388 A~~~~~--~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-------~~~~~~~ll~~~~~~~~~~ 452 (590)
...++. +..+.+ ...-..+.....+. +...+.+-+...... -..| -...-+.++..|++.-+..
T Consensus 398 ~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l 476 (1088)
T KOG4318|consen 398 CSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL 476 (1088)
T ss_pred HHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000000 00000111111111 222222222211110 0111 1122334444555555555
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-----CCCCCHhHHHHHHHHHHhcCCchHHHHHHH
Q 038522 453 EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-----NIKPTASLWSAILGACSIYGNTSLGELAAR 527 (590)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 527 (590)
+++..-+..... -+ ...|..||+.+...++.+.|..+..+. .+..|..-+..+.....+.+....+..+++
T Consensus 477 K~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~ 552 (1088)
T KOG4318|consen 477 KILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY 552 (1088)
T ss_pred HHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence 555444444322 11 156788888888888888998888887 334455667777777888888888888888
Q ss_pred HHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc-CCCceEEeecCc
Q 038522 528 NLFDME---PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK-NPGYSFLQSSKK 582 (590)
Q Consensus 528 ~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~ 582 (590)
...+.- |.-......+....+..|+.+.-.++.+-+...|+.. .|-...-+..++
T Consensus 553 e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd 611 (1088)
T KOG4318|consen 553 EDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDD 611 (1088)
T ss_pred hhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccc
Confidence 877532 3234445566666777888888888888888877766 343333333333
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.2e-12 Score=119.45 Aligned_cols=212 Identities=15% Similarity=0.146 Sum_probs=170.7
Q ss_pred hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHH
Q 038522 347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELY 423 (590)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 423 (590)
.|+.-.+..-++..++....+.. .|--+..+|....+.++....|++..+ .|+.+|..-.....-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 46677777777777776655433 255666778888999999999988764 46678888888888889999999999
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC
Q 038522 424 KKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP 501 (590)
Q Consensus 424 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 501 (590)
++.++. .| +...|..+.-+..+.+.++++...|++..++ ++..+..|+.....+..+++++.|.+.|+.+ .+.|
T Consensus 418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 999874 66 4566777776777899999999999999986 4455788899999999999999999999987 4445
Q ss_pred C---------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 502 T---------ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 502 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
+ +.....++.. ...+++..|+++++++++++|....+|..|+..-.++|+.++|+++|++..
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4 2223333332 345899999999999999999999999999999999999999999999764
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=4.8e-16 Score=143.76 Aligned_cols=218 Identities=14% Similarity=0.165 Sum_probs=114.9
Q ss_pred HHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHH
Q 038522 343 ICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG--DKNVISWTSLIAGYAKHGYGHEAI 420 (590)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 420 (590)
.+...++.+.|...++.+...+.. ++..+..++.. ...+++++|..+++..- .+++..+..++..+.+.++++++.
T Consensus 53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHH
Confidence 334455555555555555554433 45556666666 67888999988887764 356667778888899999999999
Q ss_pred HHHHHHHHcC-CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522 421 ELYKKMKHEG-MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM- 497 (590)
Q Consensus 421 ~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~- 497 (590)
++++++.... .+++...|..+...+.+.|+.++|.+.+++..+. .|+ ......++..+...|+.+++.++++..
T Consensus 131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999987543 2457778888888999999999999999999975 564 778889999999999999988888877
Q ss_pred -CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 498 -NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 498 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..+.|+..|..+..++...|++++|+..++++.+.+|+|+.....++.++...|+.++|.++++++.+
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33556778899999999999999999999999999999999999999999999999999999887644
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=6.8e-13 Score=119.78 Aligned_cols=447 Identities=11% Similarity=0.063 Sum_probs=272.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHhccCchhhHHHHHHHHHhcCCCCch----HHHHHHHHHH
Q 038522 102 MISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL-RACARMRWLQGGRMIQGSIQKGRFVENL----FVKSALLDLY 176 (590)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~ 176 (590)
|.+-|..+.-..+|+..++-+.+....|+......-| ..+.+.+.+..|.+++...+..-...+. .+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3445555566677788887777777667655443322 2345666777777777777765333222 2344444556
Q ss_pred HhcCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH------------HHHHH--
Q 038522 177 AKCGWIEDAWILFERIER--KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL------------GSILR-- 240 (590)
Q Consensus 177 ~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------~~ll~-- 240 (590)
.+.|+++.|...|+...+ |+..+--.|+-++..-|+.++..+.|.+|..-...||..-| +..+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 677777777777776654 55555444444555567777777777777654333332221 11111
Q ss_pred ---HhccCCChhHHHHHH---HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC--ccchHHHHHHHHhcC
Q 038522 241 ---ASVGGIELMKISQIH---DLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD--IISCTALISGFARDD 312 (590)
Q Consensus 241 ---~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~ 312 (590)
...+.+. ..|++.. ..++.--+.|+... -.+-..+.++.-.... ...--.-...+.+.|
T Consensus 367 ~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~ 433 (840)
T KOG2003|consen 367 HLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLEINKAGELLKNG 433 (840)
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence 0000000 0011000 00111011111100 0001111111110000 000011234577888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHH
Q 038522 313 NHSKEAFDLFKDMILKKMGIDDVILCLM--LNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANR 390 (590)
Q Consensus 313 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 390 (590)
+ ++.|+++++-+..+.-+.-+..-+.+ +.-.--..++..|.++-+......- .++.....-.+.-...|++++|.+
T Consensus 434 d-~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 434 D-IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred C-HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHH
Confidence 8 99999999988765433333222222 2222223466666666665554321 122222222233345699999999
Q ss_pred HHHhcCCCCcchHHHHH---HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCC
Q 038522 391 AFDEMGDKNVISWTSLI---AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRI 467 (590)
Q Consensus 391 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 467 (590)
.|.+....|...-.+|. ..+-..|+.++|++.|-++..- +.-+...+..+...|....+...|++++-...+ -+
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--li 588 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LI 588 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cC
Confidence 99999987776544443 3566789999999999887653 344677778888899999999999999988874 35
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhc-C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 468 LPRAEHFSCVVDLFARRGQLESAYNMIRQM-N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
+.|+.....|.+.|-+.|+-..|.+..-+- . ++-+..+...|...|....-.++++..++++.-++|........++.
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias 668 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS 668 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 556889999999999999999998876554 3 44577888888888888888899999999999999954444445577
Q ss_pred HHHhcCChHHHHHHHHHhhhc
Q 038522 546 IYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 546 ~~~~~g~~~~A~~~~~~~~~~ 566 (590)
++.+.|+++.|..+++.+.++
T Consensus 669 c~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh
Confidence 888999999999999987664
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6e-12 Score=117.17 Aligned_cols=479 Identities=13% Similarity=0.032 Sum_probs=238.3
Q ss_pred cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhcc--CCCCCccchHHHHHHHH
Q 038522 30 PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDR--MPERNVVSWTAMISGYA 107 (590)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~~ 107 (590)
..-+..+.+-+..+.++..|.-+-+.....+ .|+..--.+.+++.-.|+.+.|..+... +.+.|..+.......+.
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3456666676777778888887777776554 4555555677777778888888777655 44578888888888899
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 038522 108 QNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWI 187 (590)
Q Consensus 108 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 187 (590)
+..++++|..++..-. +.-+...|-..=. ...-+.+.+... .+.......+-.-...|....+.++|..
T Consensus 94 ~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~------~~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGED------LMINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccccc------ccccchhceeeeeeehhhhhccHHHHHH
Confidence 9999999998887321 1011111100000 000011111100 0011111112122334555566777777
Q ss_pred HHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC----CCChhhHHHHHHHh-ccCCChhHHHHHHHHHHHhC
Q 038522 188 LFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGM----KPDCFTLGSILRAS-VGGIELMKISQIHDLIIKLG 262 (590)
Q Consensus 188 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~ 262 (590)
.|.+....|+..+..+...-... .-.+.+.++.+...+. +.+....-.+.... ++..+. .....-.+..-.+
T Consensus 163 ~Y~~Al~~D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~ 239 (611)
T KOG1173|consen 163 KYKEALLADAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIG 239 (611)
T ss_pred HHHHHHhcchhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhh
Confidence 77776655555554433221111 1112222222221110 11111111111111 000000 0000000011112
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038522 263 LESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCL 339 (590)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 339 (590)
+..+..+...-.+-+...+++.+..++++.+.+.|+ ..+..-|..+...|+ ..+-..+=.++++. .+-
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~-~n~Lf~lsh~LV~~-yP~------- 310 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGK-SNKLFLLSHKLVDL-YPS------- 310 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcc-cchHHHHHHHHHHh-CCC-------
Confidence 344444555555556666666666666666643332 333334445555555 44444444455433 122
Q ss_pred HHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCc
Q 038522 340 MLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGYG 416 (590)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 416 (590)
.+.+|-++.-.|...|+..+|++.|.+...-|. ..|-....+|+-.+..
T Consensus 311 ----------------------------~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173|consen 311 ----------------------------KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred ----------------------------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence 344445555555555666666666665543222 3566666666666666
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 038522 417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIR 495 (590)
Q Consensus 417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (590)
++|+..+....+. ++-....+--+.--|.+.++.+.|.++|.... ++.|+ +...+-+.-.....+.+.+|..+|+
T Consensus 363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~ 438 (611)
T KOG1173|consen 363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQ 438 (611)
T ss_pred HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence 6666666555442 11111112222333555666666666666665 44443 4445555555555566666666665
Q ss_pred hc--------CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 496 QM--------NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 496 ~~--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.. +..+ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.+|.+++-+|...|+++.|++.|.+..-
T Consensus 439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 54 0111 2234555666666666666666666666666666666666666666666666666666665443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.8e-12 Score=125.52 Aligned_cols=245 Identities=12% Similarity=0.067 Sum_probs=146.8
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHH
Q 038522 310 RDDNHSKEAFDLFKDMILKKMGIDDVILC--LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD 387 (590)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 387 (590)
+.|+ ++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+..+. ++.....+...|.+.|++++
T Consensus 130 ~~g~-~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 130 QRGD-EARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HCCC-HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 3344 55555555555432 33322111 1133444455555555555555444432 44555566666666666666
Q ss_pred HHHHHHhcCCCCc-----------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHH
Q 038522 388 ANRAFDEMGDKNV-----------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWE 456 (590)
Q Consensus 388 A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 456 (590)
|.+++..+.+... .+|..++.......+.+...++|+.+.+. .+.++.....+..++...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 6666666553211 12223333333344455566666665443 34466677777788888888888888
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 457 LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
++++..+. .|+.... ++.+....++.+++++.+++. ...| |+..+..+...|...+++++|.+.++++++..|
T Consensus 285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 88777753 4444222 223334557888888888777 3344 445567777888888888888888888888888
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 535 EKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 535 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+...+..++.++.+.|+.++|.+++++-..
T Consensus 360 -~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 -DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556677788888888888888888876544
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=1.2e-12 Score=126.71 Aligned_cols=276 Identities=14% Similarity=0.041 Sum_probs=166.2
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhHHHHH-HHHHHhcCChHHHHHHhccCCC--CCccchH--HHHHHHHhcCChHHHHH
Q 038522 43 KKAERQAHLIHAHIITNGYESNLHLSTKV-IIFYAKVGDVLSARKAFDRMPE--RNVVSWT--AMISGYAQNGYDENALL 117 (590)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~ 117 (590)
.|+++.|.+.+....+.. +++..+..+ .....+.|+++.|...|.++.+ |+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 466666665555443321 122222222 3333566666666666666554 3322222 22445666666667766
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHh
Q 038522 118 VFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENL-------FVKSALLDLYAKCGWIEDAWILFE 190 (590)
Q Consensus 118 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~ 190 (590)
.++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666543 223445555566666666777777666666665443222 123334444444455566666666
Q ss_pred ccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCCh
Q 038522 191 RIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSN 267 (590)
Q Consensus 191 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (590)
.+++ .++.....+...+...|+.++|.+++++..+. +|+... .++.+....++.+.+.+..+...+.. +.|.
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 6653 35666777777788888888888888777663 444421 12333345577777777777777553 5566
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc--cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038522 268 KLTGSLIDVYAKYGSIRSAYQLYRSM--LKTDIISCTALISGFARDDNHSKEAFDLFKDMIL 327 (590)
Q Consensus 268 ~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 327 (590)
.....+...+.+.+++++|.+.|+.. ..|+...+..+...+.+.|+ .++|..++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~-~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK-PEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Confidence 66777788888888888888888877 34666667777777778888 8888888877643
No 43
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=2.7e-09 Score=101.26 Aligned_cols=523 Identities=12% Similarity=0.107 Sum_probs=334.7
Q ss_pred CCcccHHHHHHHhhcccchhHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHH
Q 038522 28 LDPSTYMSLLQFCIDKKAERQAHLIHAHIITN-GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGY 106 (590)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 106 (590)
.-+..|...++....+|++..-...|+..+.. .+......|...+......|-++.+.+++++..+-++..-+..|..+
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L 179 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYL 179 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34456777777788888988888888887764 33444567888888777888888999999998876666788889999
Q ss_pred HhcCChHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHhccCchhhHH---HHHHHHHhcCCCCc--hHHHHHHHHH
Q 038522 107 AQNGYDENALLVFSAMLRSG------VRANQFTYSSALRACARMRWLQGGR---MIQGSIQKGRFVEN--LFVKSALLDL 175 (590)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~--~~~~~~l~~~ 175 (590)
++.++.++|-+.+....... -+.+...|..+....++..+.-... .++..+... -+| ...|.+|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 99999999999888875431 2345556666666555544433322 233333222 233 3478999999
Q ss_pred HHhcCChHHHHHHHhccCCC--CcchHHHHHHHHHhc----------------CC------chHHHHHHHHHHHcCC---
Q 038522 176 YAKCGWIEDAWILFERIERK--DVVSWNAMIGGLAMQ----------------GF------NDDSFWLFRSMMRQGM--- 228 (590)
Q Consensus 176 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------~~------~~~a~~~~~~m~~~~~--- 228 (590)
|.+.|.+++|..+|++..+. .+.-++.+.++|++- |+ ++-.+.-|+.+...+.
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 99999999999999887642 222233333333321 11 1222333444333210
Q ss_pred --------CCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 038522 229 --------KPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLES------SNKLTGSLIDVYAKYGSIRSAYQLYRSML 294 (590)
Q Consensus 229 --------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 294 (590)
+-+..++.. +.-...|+..+....+.+.++.- .| -...|..+.+.|-..|+++.|..+|++..
T Consensus 338 NsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 001111111 11223456677777777777542 22 22467888899999999999999999986
Q ss_pred CCCc-------cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhchhhh
Q 038522 295 KTDI-------ISCTALISGFARDDNHSKEAFDLFKDMILKKMG----------I-------DDVILCLMLNICANVASL 350 (590)
Q Consensus 295 ~~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~ll~~~~~~~~~ 350 (590)
+.+- .+|......-.+..+ ++.|++++++...-.-. | +...|+..+..-...|-+
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 5433 345555555566777 89999988876532111 1 122344444555566778
Q ss_pred HhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCcc-hHHHHHHHHHh---cCCchHHHHH
Q 038522 351 NLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD----KNVI-SWTSLIAGYAK---HGYGHEAIEL 422 (590)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~a~~~ 422 (590)
+....+++.+++..+. ++.+-......+-...-++++.++|++-.. |++. .|++.+.-+.+ ....+.|..+
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888888888887765 333333344445566778999999998763 4443 67776655544 2368999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHH--hhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522 423 YKKMKHEGMVPNDVTFLSLLFA--CSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQLESAYNMIRQM- 497 (590)
Q Consensus 423 ~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~- 497 (590)
|++..+ |.+|...-+-.|+.+ -.+-|....|+.++++... ++++. ..+|+..|.--...=-+..-..+|+++
T Consensus 573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 999999 677754433333322 2356888899999999876 45554 457777776443332333344555555
Q ss_pred CCCCCHhHHHHHH---HHHHhcCCchHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHH
Q 038522 498 NIKPTASLWSAIL---GACSIYGNTSLGELAARNLFDMEP--EKSVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 498 ~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
..-|+...-...+ ..-.+.|.++.|..+|.-..++-| .++..|...=..-.+.|+-+.-.+.+
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3346555443333 233578999999999999988754 45667888888888999955444443
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.4e-13 Score=125.41 Aligned_cols=276 Identities=12% Similarity=0.026 Sum_probs=188.3
Q ss_pred hHHHHHHHHhccC--CC-ccchHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhchhhhHhHHHHH
Q 038522 283 IRSAYQLYRSMLK--TD-IISCTALISGFARDDNHSKEAFDLFKDMILKK--MGIDDVILCLMLNICANVASLNLGRQIH 357 (590)
Q Consensus 283 ~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 357 (590)
..+|...|..++. +| ......+..+|....+ +++|..+|+.+.+.. ..-+..+|++.+..+-+.- +..++
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~-Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIE-YDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 4455555555422 11 1233344555555555 666666666555431 1113345555554432211 11111
Q ss_pred -HHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522 358 -AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN---VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP 433 (590)
Q Consensus 358 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 433 (590)
+.+.+. -+..+.+|.++.++|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 112222 23367888888888888888888888888887543 45777777778888888999998888774 344
Q ss_pred c-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHH
Q 038522 434 N-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAI 509 (590)
Q Consensus 434 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 509 (590)
. -..|..+...|.+.++++.|.-.|+++. .+.|. ......+...+.+.|+.++|+++++++ ...| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 3 3456667778889999999999998888 45664 666677778888999999999999988 4344 45554555
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
+..+...+++++|++.++++.++.|++...+..++.+|.+.|+.+.|+.-|--+.+-.++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 566677889999999999999999999999999999999999999999988877664443
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=7.1e-11 Score=107.43 Aligned_cols=246 Identities=10% Similarity=0.072 Sum_probs=184.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC--cchhHHHHHHHHHHhcCChHHHHHHH
Q 038522 315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS--YDAAVGNALIDMYAKSGEIADANRAF 392 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (590)
.+++..-.......|+..+...-+....+.....++++|+.+|+.+.+..+- -|..+|+.++-.--...++.---...
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 5566666666666665555555555555556667777777777777776432 24555555543322211111111111
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-C
Q 038522 393 DEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-R 470 (590)
Q Consensus 393 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 470 (590)
-.+.+-.+.|.-++..-|.-.++.++|...|++..+. .|. ...|+.+..-|....+...|++-+++..+ +.| |
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~D 397 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRD 397 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchh
Confidence 2222334456666777788888999999999999984 675 45666677789999999999999999994 455 6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
-..|-.|..+|.-.+.+.-|+-+|+++ .++| |...|.+|...|.+.++.++|+..|++++...-.+..++..|+.+|-
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye 477 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE 477 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 789999999999999999999999999 6666 77899999999999999999999999999888778899999999999
Q ss_pred hcCChHHHHHHHHHhhh
Q 038522 549 AAGAWDNARKTRKLMEE 565 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~ 565 (590)
+.++.++|.+.+++..+
T Consensus 478 ~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 478 ELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 99999999999998776
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=4.4e-14 Score=130.68 Aligned_cols=252 Identities=12% Similarity=0.069 Sum_probs=87.2
Q ss_pred ccccccccCChHHHHHHhhhC-CCC-CCCcccH-HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 038522 3 IVRANFKTGQLKQALKFSLSC-PDT-LLDPSTY-MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG 79 (590)
Q Consensus 3 l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (590)
+...+.+.|++++|++++++. ... +|+...| ..+...+...++++.|...++.+.+.+ +-++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence 345667777888888877544 333 3433333 444455666777778888888777765 3356666666666 5777
Q ss_pred ChHHHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522 80 DVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFTYSSALRACARMRWLQGGRMIQGS 156 (590)
Q Consensus 80 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 156 (590)
++++|.+++...-+ ++...+...+..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...++.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777766533 555666677777777788888777777766432 234556666666667777777777777777
Q ss_pred HHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 038522 157 IQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF 233 (590)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 233 (590)
.++.. +.|..+...++..+...|+.+++.++++...+ .|...|..+..++...|++++|+..|++....+ +.|..
T Consensus 172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~ 249 (280)
T PF13429_consen 172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL 249 (280)
T ss_dssp HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence 77763 33456667777777777777776666655432 455667777777777777777777777766542 33555
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHH
Q 038522 234 TLGSILRASVGGIELMKISQIHDLI 258 (590)
Q Consensus 234 ~~~~ll~~~~~~~~~~~a~~~~~~~ 258 (590)
....+..++...|+.++|.++....
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5566666666666666666665544
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=9e-11 Score=106.75 Aligned_cols=321 Identities=11% Similarity=0.066 Sum_probs=169.4
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH--HHHH
Q 038522 162 FVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL--GSIL 239 (590)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll 239 (590)
...|...+-...-.+-+.|....|+..|......-+..|.+.+....-..+.+.+..+ . .|.+.|..-+ -.+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHH
Confidence 3445544444555566677778888887777654455555544433323232222221 1 1222221111 1233
Q ss_pred HHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc------cchHHHHHHHHhcCC
Q 038522 240 RASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI------ISCTALISGFARDDN 313 (590)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~ 313 (590)
.++......+++.+-.....+.|++.+...-+....+.-...++++|+.+|+++.+.|+ .+|+.++- .++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence 44555556677777777777777776666666666666677777888888877755433 34444332 22211
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHH
Q 038522 314 HSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFD 393 (590)
Q Consensus 314 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 393 (590)
..+.++..-.-.--+--+.|...+.+-++-.++.++|..+|+...+.++. ....++.+.+-|....+...|..-++
T Consensus 313 ---skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 ---SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ---HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22223322221111222234444455555555666666666666655543 34445555555666666666666665
Q ss_pred hcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522 394 EMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP 469 (590)
Q Consensus 394 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (590)
...+ .|-..|-.|.++|.-.+-+.-|+-.|++..+. +| |+..|.+|.++|.+.++.++|++-|.+...- -..
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dt 464 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDT 464 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--ccc
Confidence 5543 23445555666666666666666666665552 44 4555666666666666666666666655542 122
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
+...+..|.+.|-+.++.++|...|++.
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455555666666666666665555443
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=4.4e-12 Score=123.55 Aligned_cols=278 Identities=13% Similarity=0.021 Sum_probs=154.0
Q ss_pred cccchhHHHHHHHHHHHhcCCCch-hHHHHHHHHHHhcCChHHHHHHhccCCC--CCcc--chHHHHHHHHhcCChHHHH
Q 038522 42 DKKAERQAHLIHAHIITNGYESNL-HLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVV--SWTAMISGYAQNGYDENAL 116 (590)
Q Consensus 42 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~--~~~~li~~~~~~~~~~~a~ 116 (590)
..|+++.|.+.+....+.. |++ ..+-....++.+.|+.+.|...+....+ |+.. ..-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4456666666665554432 222 2223334455556666666666665432 3322 2222355555666666666
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHH-------HHHHHHHHhcCChHHHHHHH
Q 038522 117 LVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVK-------SALLDLYAKCGWIEDAWILF 189 (590)
Q Consensus 117 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~~ 189 (590)
..++.+.+.. +-+......+...+.+.|+++.+..++..+.+.++.++.... ..++..-......+...+.+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666543 223445555555666666666666666666665433222211 11111111222233444444
Q ss_pred hccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH---HHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522 190 ERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL---GSILRASVGGIELMKISQIHDLIIKLGL 263 (590)
Q Consensus 190 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (590)
+..++ .+...+..+...+...|+.++|.+++++..+. .||.... ..........++.+.+.+.++...+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 44443 35666677777777777777777777777765 3433321 111112233466666767766666542
Q ss_pred CCCh--hHHHHHHHHHHhcCChHHHHHHHHh--c--cCCCccchHHHHHHHHhcCCChHHHHHHHHHHH
Q 038522 264 ESSN--KLTGSLIDVYAKYGSIRSAYQLYRS--M--LKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326 (590)
Q Consensus 264 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 326 (590)
+.|+ ....++...+.+.|++++|.+.|+. . ..|+...+..+...+.+.|+ .++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~-~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD-KAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 3334 5556777777788888888888873 3 35666667777777777777 788888777754
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.53 E-value=3e-11 Score=118.28 Aligned_cols=483 Identities=10% Similarity=-0.025 Sum_probs=285.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC----CccchHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038522 51 LIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPER----NVVSWTAMISGYAQNGYDENALLVFSAMLRSG 126 (590)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 126 (590)
.++..+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-. +...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677888999999999999999999999999999 88888753 4557888888888888887765
Q ss_pred CCCCHhhHHHHHHHHhccCchhhH---HHHHHHHHh----cCCCCchHH--------------HHHHHHHHHhcCChHHH
Q 038522 127 VRANQFTYSSALRACARMRWLQGG---RMIQGSIQK----GRFVENLFV--------------KSALLDLYAKCGWIEDA 185 (590)
Q Consensus 127 ~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~----~~~~~~~~~--------------~~~l~~~~~~~~~~~~A 185 (590)
.|...||..++.+|...||+..- ++.++.+.. .|+-....- -...+......|.++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999986653 332222222 222111111 11223334455666777
Q ss_pred HHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522 186 WILFERIERK--DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGL 263 (590)
Q Consensus 186 ~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (590)
++++..++.. +. ....+++-+.... ....++....+...-.|++.+|..++++....|+.+.|..++.+|.+.|+
T Consensus 159 lkll~~~Pvsa~~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HHHHhhCCcccccc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 7777666531 11 1111233222222 22233332222211158999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhc----cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038522 264 ESSNKLTGSLIDVYAKYGSIRSAYQLYRSM----LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCL 339 (590)
Q Consensus 264 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 339 (590)
+.+..-|-.|+.+ .++...++.+++.| +.|+..|+...+..+..++. ... .+.| .+....+++
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~-t~~--------~~e~-sq~~hg~tA 302 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ-TKY--------GEEG-SQLAHGFTA 302 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh-hhh--------cccc-cchhhhhhH
Confidence 9998888777655 77777778777777 56888888877777766433 111 1122 222222222
Q ss_pred HHHHHhchh-----hhHhH-----HHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-------Ccch
Q 038522 340 MLNICANVA-----SLNLG-----RQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK-------NVIS 402 (590)
Q Consensus 340 ll~~~~~~~-----~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~ 402 (590)
-+..-.-.| .++.- ...+....-.|+.....++....... ..|+-+...++-..+..| ++..
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 222221122 22111 11122222244444445544444332 267777777777777643 4445
Q ss_pred HHHHHHHHHhcCCchHHHHHHH--HHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH-----Hhhc-C----CCCC
Q 038522 403 WTSLIAGYAKHGYGHEAIELYK--KMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM-----INKY-R----ILPR 470 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~-~----~~~~ 470 (590)
|..++.-|.+.-+..-...++. +..+.. .+....-.+.....+. +...+..-+..+ .+.+ . ..|-
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 6666655554322222211111 222110 0111101111111111 111111111111 1110 0 0111
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC---CCcchHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP---EKSVNYVVLSNIY 547 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~ 547 (590)
...-+.++..+.+.-+..+++..-++....--+..|..|++-+..+...+.|..+..++...+. -+..-+..+.+.+
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 2345566777777777777776555541111126788999999999999999999998876553 2344578889999
Q ss_pred HhcCChHHHHHHHHHhhh
Q 038522 548 TAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 548 ~~~g~~~~A~~~~~~~~~ 565 (590)
.+.+...++..+++++.+
T Consensus 539 ~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHhHHHHHHHHHHhhhhH
Confidence 999999999999999987
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.8e-12 Score=123.22 Aligned_cols=248 Identities=12% Similarity=0.124 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC--cchhHHHHHHHHHHhcCChHHHHHHH
Q 038522 315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS--YDAAVGNALIDMYAKSGEIADANRAF 392 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 392 (590)
..+|+..|.... ..+.-+......+..+|...+++++++.+|+.+.+..+- -+..+|...+--+-+.-...---+-+
T Consensus 335 ~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 678999999844 334445577788899999999999999999999875432 25566666554332211111111111
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-
Q 038522 393 DEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR- 470 (590)
Q Consensus 393 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 470 (590)
-+.....+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+... ++.|.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchh
Confidence 122234678999999999999999999999999997 467 57788888878888899999999999888 44443
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
-..|-.+.-.|.+.++++.|+-.|+++ .+.|.. .....+...+.+.|+.++|+++++++..++|.|+-.-+..+.++.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 334556778899999999999999999 777754 455777788889999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhcCC
Q 038522 549 AAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~~ 568 (590)
..+++++|++.++++++.-+
T Consensus 569 ~~~~~~eal~~LEeLk~~vP 588 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELVP 588 (638)
T ss_pred hhcchHHHHHHHHHHHHhCc
Confidence 99999999999999987544
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=3.9e-11 Score=116.94 Aligned_cols=290 Identities=10% Similarity=0.009 Sum_probs=171.4
Q ss_pred hcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 038522 209 MQGFNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAY 287 (590)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 287 (590)
..|+++.|.+.+.+..+. .|+.. .+.....+..+.|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456667776666655443 33322 223334445556666666666666654431222223333455566666666666
Q ss_pred HHHHhccC--C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhC
Q 038522 288 QLYRSMLK--T-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQ 364 (590)
Q Consensus 288 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 364 (590)
..++.+.+ | +......+...+...|+ +++|.+++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d-~~~a~~~l~~l~k~~~~~~~-~~~~l~~---------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGA-WQALDDIIDNMAKAGLFDDE-EFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence 66666532 2 33445555566666666 66666666666655432221 1110000
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHH---H
Q 038522 365 SSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVT---F 438 (590)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~ 438 (590)
..+..++..-......+...+.++...+ .++..+..+...+...|++++|.+.+++..+. .||... .
T Consensus 230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~ 302 (409)
T TIGR00540 230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP 302 (409)
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence 0001111111112223444455555542 36677777888888888888898888888875 444332 1
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--c-CCCCCHhHHHHHHHHHHh
Q 038522 439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQ--M-NIKPTASLWSAILGACSI 515 (590)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~ 515 (590)
..........++.+.+.+.++...+.....|+.....++...+.+.|++++|.+.|+. . ...|++..+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1122223445777888888888886522222225667888889999999999999994 3 668888888889999999
Q ss_pred cCCchHHHHHHHHHhc
Q 038522 516 YGNTSLGELAARNLFD 531 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~ 531 (590)
.|+.++|.++|++.++
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998864
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=2.1e-10 Score=100.68 Aligned_cols=445 Identities=14% Similarity=0.057 Sum_probs=218.4
Q ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChH
Q 038522 37 LQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDE 113 (590)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 113 (590)
+.-+....++..|..+++.-...+-+....+-.-+...+.+.|++++|...+..+.+ ++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 444555667777877777655443222223334455667778888888888877654 55556666666666667777
Q ss_pred HHHHHHHHHHHcCCCCCHhhH-HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc
Q 038522 114 NALLVFSAMLRSGVRANQFTY-SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI 192 (590)
Q Consensus 114 ~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 192 (590)
+|..+-... |+.... ..++...-+.++-+.-..+.+.+.+. ..-..+|.+..-..-++.+|+++++++
T Consensus 109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 777665443 232333 33344445566666655555555432 223334445555555778888888888
Q ss_pred CCCC--cchHHH-HHHHHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChh
Q 038522 193 ERKD--VVSWNA-MIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQIHDLIIKLGLESSNK 268 (590)
Q Consensus 193 ~~~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 268 (590)
...+ -...|. +.-+|.+..-++-+.++++-.... .||+. ..|.......+.-+-..|++-.+.+.+.+-..
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--- 252 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--- 252 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence 7533 333343 334667777788888888777665 44433 33332222223222222333333333322111
Q ss_pred HHHHHHHHHHhc-----CChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038522 269 LTGSLIDVYAKY-----GSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNI 343 (590)
Q Consensus 269 ~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 343 (590)
|- .+.-.++. ..-+.|++++-.+.+.-+..--.++--|.+.++ +.+|..+.+++. ...|-....-.++.+
T Consensus 253 -~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d-VqeA~~L~Kdl~--PttP~EyilKgvv~a 327 (557)
T KOG3785|consen 253 -YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND-VQEAISLCKDLD--PTTPYEYILKGVVFA 327 (557)
T ss_pred -ch-hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc-HHHHHHHHhhcC--CCChHHHHHHHHHHH
Confidence 10 11122221 234556666555543333334445555677777 888888877763 112222222222211
Q ss_pred -----HhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038522 344 -----CANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHE 418 (590)
Q Consensus 344 -----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 418 (590)
......+.-|.+.+...-+.+..-| .+..-.++...+.-..++++
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecD------------------------------TIpGRQsmAs~fFL~~qFdd 377 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECD------------------------------TIPGRQSMASYFFLSFQFDD 377 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccc------------------------------cccchHHHHHHHHHHHHHHH
Confidence 1112223333333433333322211 11222333344444444555
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522 419 AIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN 498 (590)
Q Consensus 419 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 498 (590)
++..++.+..--...|...+ .+.++.+..|++.+|.++|-.+... .++.+..-...|.++|.+.|+++-|.+++-++.
T Consensus 378 Vl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 378 VLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred HHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 55555554443222222222 3445555555666665555555422 222222222234455555566666666555553
Q ss_pred CCCCHhH-HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 499 IKPTASL-WSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 499 ~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
-+.+..+ ...+.+-|.+.+++--|-+.|..+..++|
T Consensus 456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 2222222 23333455555555555555555555555
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.50 E-value=7.3e-11 Score=102.37 Aligned_cols=120 Identities=13% Similarity=0.104 Sum_probs=72.5
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCChH
Q 038522 208 AMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLG-LESS--NKLTGSLIDVYAKYGSIR 284 (590)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~ 284 (590)
.-..++++|.++|-+|.+.. +.+..+-.++.+.+.+.|..+.|.++++.+.++. .+.+ ......|..-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34568889999999888642 2334445567777778888888888888777642 1111 112334555666677777
Q ss_pred HHHHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038522 285 SAYQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMILKK 329 (590)
Q Consensus 285 ~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~ 329 (590)
.|+.+|..+.+.+. .....|+..|-...+ +++|++.-.++...+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~tre-W~KAId~A~~L~k~~ 171 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATRE-WEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHcC
Confidence 77777766654222 234445555555555 666666555555443
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.2e-10 Score=102.72 Aligned_cols=285 Identities=10% Similarity=0.031 Sum_probs=156.6
Q ss_pred cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 038522 210 QGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL 289 (590)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 289 (590)
.|++..|.++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..-.++..+.-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 56666666666665554422 23344445555666677777777766666654355555556666666677777777666
Q ss_pred HHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC
Q 038522 290 YRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS 366 (590)
Q Consensus 290 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (590)
.+++. ..++........+|.+.|+ +.....++..+.+.|.-.++..-.
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~-~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGA-WQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhcc-HHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 65552 2345556666667777777 777777777777666444332100
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522 367 YDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF 443 (590)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 443 (590)
....+++.+++-....+..+.-...|+... +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. ..-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence 012223333333333333333344455444 2344455555566666666666666666666655555411 122
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a 522 (590)
.+.+.++...-++..+.-.+.++..| ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+.+..++.+.|+.+.|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence 34555566555555555555433322 45555555555666666666655554 5555555555555555555666555
Q ss_pred HHHHHHHh
Q 038522 523 ELAARNLF 530 (590)
Q Consensus 523 ~~~~~~~~ 530 (590)
.+..++.+
T Consensus 381 ~~~r~e~L 388 (400)
T COG3071 381 EQVRREAL 388 (400)
T ss_pred HHHHHHHH
Confidence 55555554
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.9e-10 Score=105.39 Aligned_cols=337 Identities=10% Similarity=-0.018 Sum_probs=179.7
Q ss_pred ccccccCChHHHHHHhhhCCCCCCC-cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHH
Q 038522 5 RANFKTGQLKQALKFSLSCPDTLLD-PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLS 83 (590)
Q Consensus 5 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 83 (590)
+-+.++|++++|+++|.++....|+ +.-|.....+|...|+++.+.+.-...++.+ +.-+..+.....++-..|++++
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHH
Confidence 4577899999999999999667777 7777888888889999999888877777654 2234566666777777888888
Q ss_pred HHHHhccCCCCCccchHHHHHHHHhcCCh--------HHHHHHHHHHHH-cC--CCCCHhhHHHHHHHHhccCchhhHHH
Q 038522 84 ARKAFDRMPERNVVSWTAMISGYAQNGYD--------ENALLVFSAMLR-SG--VRANQFTYSSALRACARMRWLQGGRM 152 (590)
Q Consensus 84 a~~~~~~~~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~--~~p~~~~~~~ll~~~~~~~~~~~a~~ 152 (590)
|+.= .|-.++...+-.+.-. ..|....++-.+ ++ +-|+.....+.++.+...-.
T Consensus 202 al~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~------ 266 (606)
T KOG0547|consen 202 ALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK------ 266 (606)
T ss_pred HHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc------
Confidence 7531 1112222222111111 112222222222 22 34665555554444321100
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHhc-CChHHHHHHHhccC-----CC-----Ccc------hHHHHHHHHHhcCCchH
Q 038522 153 IQGSIQKGRFVENLFVKSALLDLYAKC-GWIEDAWILFERIE-----RK-----DVV------SWNAMIGGLAMQGFNDD 215 (590)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-----~~-----~~~------~~~~li~~~~~~~~~~~ 215 (590)
..+...+...|...-..+-..+... ..+.+|...+.+-. .+ |.. +...-...+.-.|+.-.
T Consensus 267 --~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~ 344 (606)
T KOG0547|consen 267 --PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG 344 (606)
T ss_pred --ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence 0000000000111111111111110 12222322222111 01 111 11111122345677788
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC
Q 038522 216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK 295 (590)
Q Consensus 216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 295 (590)
|.+-|+..+.....++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-...+.-.++++.|..-|++...
T Consensus 345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888766433322 26666667778888888888888777765 44555666666666666777777777776643
Q ss_pred C---CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh
Q 038522 296 T---DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKY 363 (590)
Q Consensus 296 ~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 363 (590)
- +...|-.+-.+..+.+. +++++..|++.+.+ ++.-+..|+.....+...++++.|.+.++..++.
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 3 23445555555556666 77777777776654 2333445555555555555555555555555543
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=2.2e-11 Score=110.11 Aligned_cols=198 Identities=12% Similarity=0.087 Sum_probs=165.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 444 (590)
....+..+...+...|++++|...+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999998763 3 45577888899999999999999999998863 3456677788888
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHH
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 522 (590)
+...|++++|.+.+++..+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999864222234556777888999999999999999998 4344 466788888999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998877653
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=3.4e-10 Score=101.48 Aligned_cols=219 Identities=12% Similarity=0.094 Sum_probs=158.2
Q ss_pred HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-----------cchHHHHH
Q 038522 339 LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN-----------VISWTSLI 407 (590)
Q Consensus 339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~l~ 407 (590)
+........|+.+.|..-...+.+.++. .+.+......+|.+.|++.....++.++.+.. ..+|+.++
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL 236 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL 236 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333 34444556666666677766666666665422 23677788
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 038522 408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQL 487 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (590)
+-....+..+.-...|++...+ .+-++..-..++.-+...|+.++|.++.++..++ +..|+ ...+ -...+-++.
T Consensus 237 ~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~-~~~l~~~d~ 310 (400)
T COG3071 237 QQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRL-IPRLRPGDP 310 (400)
T ss_pred HHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHH-HhhcCCCCc
Confidence 7777777777777788887664 4556777778888899999999999999999987 66665 1122 234566777
Q ss_pred HHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 488 ESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 488 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..=++..++. ..+.++..+.+|...|.+++.+.+|...++.+++..| +...|.-++.++.+.|+.++|.+..++..-
T Consensus 311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7766666665 3344557889999999999999999999999999999 889999999999999999999999998764
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.43 E-value=9.7e-09 Score=99.83 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=103.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHh
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSI 515 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 515 (590)
|......+.+.++.++|..-+.+..+- .+.....|......+...|+.++|.+.|... .+.| ++.+..++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344455667777888888777777632 2334566777777888899999999998887 5566 45678889999999
Q ss_pred cCCchHHHH--HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 516 YGNTSLGEL--AARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 516 ~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
.|+...|.. ++..+++++|.++.+|+.|+.++.+.|+.++|.+.|+...+-
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 999988888 999999999999999999999999999999999999988773
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.6e-09 Score=93.08 Aligned_cols=307 Identities=10% Similarity=0.027 Sum_probs=200.4
Q ss_pred CCChhhHHHHHHHhcc--CCChhHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHH-
Q 038522 229 KPDCFTLGSILRASVG--GIELMKISQIHDLIIK-LGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTAL- 304 (590)
Q Consensus 229 ~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l- 304 (590)
+|...+....+.+++. .++-..+...+-.+.. .-++.+......+...+...|+.++|...|++...-|+.+...+
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 4444444444554433 3333333333333333 34677788888999999999999999999988754444332221
Q ss_pred --HHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522 305 --ISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS 382 (590)
Q Consensus 305 --~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (590)
...+.+.|+ .+....+...+.... .-....|-.-.......++++.|..+-+..++.... +...+-.-...+...
T Consensus 271 ~Ya~LL~~eg~-~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGG-CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccC-HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence 222344555 777766666665332 112222222233344567777777777766665533 344444445667778
Q ss_pred CChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHH-HHhh-ccCChHHHHHH
Q 038522 383 GEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLL-FACS-HTGLTCEGWEL 457 (590)
Q Consensus 383 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~ 457 (590)
|+.++|.-.|+.... -+..+|..|+.+|...|++.+|..+-+...+. +..+..+...+. ..|. ....-++|.++
T Consensus 348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 888888888887653 36678888888888888888888877776654 344556655552 3333 23345778888
Q ss_pred HHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 458 FTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 458 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
++.-. .+.|+ ....+.+...+.+.|..+.++.++++. ...||....+.|...+...+.+.+|...|..++.++|+
T Consensus 427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 87776 44666 456677778888888888888888887 66788888888888888888888888888888888886
Q ss_pred CcchHHH
Q 038522 536 KSVNYVV 542 (590)
Q Consensus 536 ~~~~~~~ 542 (590)
+..+...
T Consensus 504 ~~~sl~G 510 (564)
T KOG1174|consen 504 SKRTLRG 510 (564)
T ss_pred chHHHHH
Confidence 6544433
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.42 E-value=7.5e-08 Score=91.75 Aligned_cols=539 Identities=12% Similarity=0.078 Sum_probs=329.0
Q ss_pred HHHHHhhhC-CCCCCCcccHHHHHHHh--------hcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHH
Q 038522 15 QALKFSLSC-PDTLLDPSTYMSLLQFC--------IDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR 85 (590)
Q Consensus 15 ~a~~~~~~~-~~~~~~~~~~~~ll~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 85 (590)
+-.-+|+++ ...+-+...|...|+.= -....+......|+...-.- ..=+..|..-+....++|++....
T Consensus 44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-HkmpRIwl~Ylq~l~~Q~~iT~tR 122 (835)
T KOG2047|consen 44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKMPRIWLDYLQFLIKQGLITRTR 122 (835)
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcchHHHHH
Confidence 344567777 55555666666666321 11223444555555443321 233466777788888999999999
Q ss_pred HHhccCCC-----CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhc
Q 038522 86 KAFDRMPE-----RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKG 160 (590)
Q Consensus 86 ~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 160 (590)
..|+.... .....|...+......+-++-++.++++.++ +.| ..-.--|.-++..+++++|.+.+...+..
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 99987543 3456788889988888999999999999987 334 44677788889999999999999888764
Q ss_pred C------CCCchHHHHHHHHHHHhcCCh---HHHHHHHhccCC--CC--cchHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 038522 161 R------FVENLFVKSALLDLYAKCGWI---EDAWILFERIER--KD--VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQG 227 (590)
Q Consensus 161 ~------~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 227 (590)
. .+.+...|..+-+..++.-+. -....+++.... +| ...|.+|.+-|.+.|.+++|-++|++....
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~- 277 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT- 277 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence 2 244555666666666555332 223444444433 22 356999999999999999999999998765
Q ss_pred CCCChhhHHHHHHHhccCCC----------------------hhHHHHHHHHHHHhC-----------CCCChhHHHHHH
Q 038522 228 MKPDCFTLGSILRASVGGIE----------------------LMKISQIHDLIIKLG-----------LESSNKLTGSLI 274 (590)
Q Consensus 228 ~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~ 274 (590)
..+..-|..+.++|+.-.. ++....-|+.+.... -+.++..|..-
T Consensus 278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR- 355 (835)
T KOG2047|consen 278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR- 355 (835)
T ss_pred -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh-
Confidence 4455555555555543211 122222233333221 01112222211
Q ss_pred HHHHhcCChHHHHHHHHhcc---CC------CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 038522 275 DVYAKYGSIRSAYQLYRSML---KT------DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGID---DVILCLMLN 342 (590)
Q Consensus 275 ~~~~~~g~~~~a~~~~~~~~---~~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~ 342 (590)
.-+..|+..+-...+.+.+ .| -...|..+...|-..++ .+.|..+|++...-..+-- ..+|..-..
T Consensus 356 -V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~-l~~aRvifeka~~V~y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 356 -VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD-LDDARVIFEKATKVPYKTVEDLAEVWCAWAE 433 (835)
T ss_pred -hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc-HHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence 1222345555555565552 11 12346666777777788 8888888888765432211 122333333
Q ss_pred HHhchhhhHhHHHHHHHHHHhCCC-----------c------chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHH
Q 038522 343 ICANVASLNLGRQIHAFAFKYQSS-----------Y------DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTS 405 (590)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 405 (590)
.=.+..+++.|..+.+.+....-. + +..++..+++.....|-++....+|+++.+-.+.|=..
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi 513 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI 513 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH
Confidence 334455666777666655332111 1 33445555666666777888888888777533333222
Q ss_pred HHH---HHHhcCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhc---cCChHHHHHHHHHHHhhcCCCCChh--HHHH
Q 038522 406 LIA---GYAKHGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSH---TGLTCEGWELFTDMINKYRILPRAE--HFSC 476 (590)
Q Consensus 406 l~~---~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~ 476 (590)
++. -+-.+.-++++.++|++-+..=-.|+. ..|+..+.-+.+ .-.++.|..+|++..+ +.+|... .|-.
T Consensus 514 i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 514 IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLL 591 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence 222 223445677888888776655334543 355555554442 3358999999999997 5565422 2322
Q ss_pred HHHHHHhcCChHHHHHHHHhc--CCCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch--HHHHHHHHHhc
Q 038522 477 VVDLFARRGQLESAYNMIRQM--NIKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN--YVVLSNIYTAA 550 (590)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~ 550 (590)
....=-+.|-...|+++++++ +.++. ...|+..+.-....=-+.....+|+++++.-|++..- ....+..-.+.
T Consensus 592 YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl 671 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKL 671 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh
Confidence 233334568888999999998 44443 2467777755544445677889999999998854333 44456777888
Q ss_pred CChHHHHHHHHHhhh
Q 038522 551 GAWDNARKTRKLMEE 565 (590)
Q Consensus 551 g~~~~A~~~~~~~~~ 565 (590)
|..+.|+.++....+
T Consensus 672 GEidRARaIya~~sq 686 (835)
T KOG2047|consen 672 GEIDRARAIYAHGSQ 686 (835)
T ss_pred hhHHHHHHHHHhhhh
Confidence 999999999987666
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3e-08 Score=93.54 Aligned_cols=435 Identities=13% Similarity=0.091 Sum_probs=243.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCC-CCchHHHHHHHHHH--Hhc
Q 038522 103 ISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRF-VENLFVKSALLDLY--AKC 179 (590)
Q Consensus 103 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~--~~~ 179 (590)
++-+...|++++|.+...++...+ +-+...+..-+-++.+.+.+++|..+.+. .+. ..+.+-+ +=.+| .+.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh--HHHHHHHHHc
Confidence 344556677777777777776643 33444555555566666777776633322 111 1111111 23333 456
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHHHHHH
Q 038522 180 GWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQIHDLI 258 (590)
Q Consensus 180 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~ 258 (590)
+..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+.+--.. .-..++.+-... .+ +.+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HHH
Confidence 788888888885555555566666777888888888888888887665322111 111111111000 00 011
Q ss_pred HHhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhc--------cCCCc----------cchHHHHHHHHhcCCChHHH
Q 038522 259 IKLGLES--SNKLTGSLIDVYAKYGSIRSAYQLYRSM--------LKTDI----------ISCTALISGFARDDNHSKEA 318 (590)
Q Consensus 259 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~----------~~~~~l~~~~~~~~~~~~~a 318 (590)
......| +...+......+...|++.+|++++... ...|. .+--.+.-.+...|+ .++|
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq-t~ea 243 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ-TAEA 243 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc-hHHH
Confidence 2222222 1222223455667788888888888776 11111 112234455667788 8999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH---HHhchhhhHh--HHHH-----------HHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522 319 FDLFKDMILKKMGIDDVILCLMLN---ICANVASLNL--GRQI-----------HAFAFKYQSSYDAAVGNALIDMYAKS 382 (590)
Q Consensus 319 ~~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~ 382 (590)
..++...+... .+|......... +...-.++.. +... +.........-.+..-+.++.+|.
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-- 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-- 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 99998888764 444422222211 1111111111 0001 111111111111222234444443
Q ss_pred CChHHHHHHHHhcCCCC-cchHHHHHHHHHh--cCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCChHHHHHH
Q 038522 383 GEIADANRAFDEMGDKN-VISWTSLIAGYAK--HGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGLTCEGWEL 457 (590)
Q Consensus 383 ~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~ 457 (590)
+..+.+.++...+.... ...+.+++....+ ...+.++.+++....+. .|. ....-..+......|+++.|.++
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 55667777777766432 3445555544432 33577888888887764 443 34555566677889999999999
Q ss_pred HH--------HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-----CCCCCHhH----HHHHHHHHHhcCCch
Q 038522 458 FT--------DMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-----NIKPTASL----WSAILGACSIYGNTS 520 (590)
Q Consensus 458 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~----~~~l~~~~~~~~~~~ 520 (590)
+. .+.+ +...+.+...+...+.+.++.+.|..++.+. ...+.... +..+...-.+.|+.+
T Consensus 399 l~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 399 LSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 98 4442 2333455666777888888777666666555 11222222 333333345779999
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522 521 LGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (590)
+|...++++++.+|++......++.+|+.. +.+.|..+-.
T Consensus 476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999999999999999876 4566665544
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.39 E-value=2.1e-07 Score=88.99 Aligned_cols=548 Identities=13% Similarity=0.088 Sum_probs=297.1
Q ss_pred ccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 038522 9 KTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKA 87 (590)
Q Consensus 9 ~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 87 (590)
..|+-++|...-... .+..-+.+.|+.+.-.+....++++|.+++..+.+.+ +.|...+.-+.-.-++.|+++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 346666666666655 5455555566666666666677777777777777765 45666666665556666776666655
Q ss_pred hccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHH------HhccCchhhHHHHHHHH
Q 038522 88 FDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFTYSSALRA------CARMRWLQGGRMIQGSI 157 (590)
Q Consensus 88 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~ 157 (590)
-....+ .....|..+.-++.-.|+...|..++++..+.. -.|+...|...... ....|..+.|.+.+..-
T Consensus 132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 555444 234467777777777888888888888877654 24666665544332 34455666665555443
Q ss_pred HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHH-HHHHhcCCchHHH-HHHHHHHHcCCCCChh
Q 038522 158 QKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMI-GGLAMQGFNDDSF-WLFRSMMRQGMKPDCF 233 (590)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~ 233 (590)
... +......-..-.+.+.+.++.++|..++..+.. ||...|+... .++.+-.+.-+++ .+|....+. .|...
T Consensus 212 e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e 288 (700)
T KOG1156|consen 212 EKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHE 288 (700)
T ss_pred hhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccc
Confidence 332 122222333445667777888888888887765 4444444333 3333222222333 445444332 12111
Q ss_pred hHHH-HHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH----HHhc--------------c
Q 038522 234 TLGS-ILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL----YRSM--------------L 294 (590)
Q Consensus 234 ~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~--------------~ 294 (590)
.-.. -+..+....-.+....++....+.|+++- +..+...|-.-...+-..++ ...+ .
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E 365 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE 365 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence 1110 01111112223334455566666665542 22233333222211111111 1111 1
Q ss_pred CCCccc--hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhH
Q 038522 295 KTDIIS--CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDV-ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAV 371 (590)
Q Consensus 295 ~~~~~~--~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 371 (590)
.|.... +-.+...+-..|+ ++.|..+++..+.+ .|+.. .|..-.+.+...|+++.|..+++...+.+. +|..+
T Consensus 366 ~PttllWt~y~laqh~D~~g~-~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~I 441 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGD-YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAI 441 (700)
T ss_pred CchHHHHHHHHHHHHHHHccc-HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHH
Confidence 122222 3335666777788 88888888887754 55543 344445677788888888888888877663 35555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCcc----------hHHHH--HHHHHhcCCchHHHHHHHHHHHc-----CCCCc
Q 038522 372 GNALIDMYAKSGEIADANRAFDEMGDKNVI----------SWTSL--IAGYAKHGYGHEAIELYKKMKHE-----GMVPN 434 (590)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~l--~~~~~~~~~~~~a~~~~~~m~~~-----g~~p~ 434 (590)
-.--+....+..+.++|..+.....+.+.. .|-.+ ..+|.+.|++..|++-|....+. .-+.|
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfD 521 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFD 521 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Confidence 446666777888888888888777643221 22222 35667777777666555444321 01234
Q ss_pred HHHH----------HHHHHHhhccC-------ChHHHHHHHHHHHhhcCCC-CChhHHHHHH----HHHHhc-CChHHHH
Q 038522 435 DVTF----------LSLLFACSHTG-------LTCEGWELFTDMINKYRIL-PRAEHFSCVV----DLFARR-GQLESAY 491 (590)
Q Consensus 435 ~~~~----------~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~----~~~~~~-g~~~~A~ 491 (590)
..|| .-|+.-.-... -...|++++-.|.+..... +.......+- ....+. .+-.+|.
T Consensus 522 fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~ 601 (700)
T KOG1156|consen 522 FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAK 601 (700)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHH
Confidence 4443 22222211111 1134566666666441000 1111111111 111111 1111222
Q ss_pred HHHHhc--------------CCCCCHhHHHHHHHHHHhcCCc-hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522 492 NMIRQM--------------NIKPTASLWSAILGACSIYGNT-SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 492 ~~~~~~--------------~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 556 (590)
..-+.+ +..||.. -+.....+..++ ++|..++..+....+++..+|..-+.+|.+.|.+.-|
T Consensus 602 ~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~ 678 (700)
T KOG1156|consen 602 KEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLA 678 (700)
T ss_pred HHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHH
Confidence 211111 2334544 233333444443 6799999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCcc
Q 038522 557 RKTRKLMEERSLRK 570 (590)
Q Consensus 557 ~~~~~~~~~~~~~~ 570 (590)
.+.++.......+.
T Consensus 679 ~~~~~~~~~~~~~~ 692 (700)
T KOG1156|consen 679 LACLNNAEGIHGTH 692 (700)
T ss_pred HHHHHhhhhhcCCC
Confidence 99999887754433
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.9e-09 Score=93.86 Aligned_cols=303 Identities=13% Similarity=0.078 Sum_probs=226.2
Q ss_pred HHhcCChHHHHHHHHhccCCCccchH---HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhchhhh
Q 038522 277 YAKYGSIRSAYQLYRSMLKTDIISCT---ALISGFARDDNHSKEAFDLFKDMILKKMGIDD---VILCLMLNICANVASL 350 (590)
Q Consensus 277 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~ 350 (590)
+.-+.+.++|.+.|-+|.+.|+.++. +|...|.+.|. .+.|+.+-+.+.++.--+.. ...-.+..-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE-vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 44467899999999999877766654 46677888888 99999999998864222211 2334566677889999
Q ss_pred HhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcch--------HHHHHHHHHhcCCchHHHHH
Q 038522 351 NLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVIS--------WTSLIAGYAKHGYGHEAIEL 422 (590)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~ 422 (590)
+.|+.+|..+.+.+.- -......|+..|-...+|++|+++-+++.+-+... |--|...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 9999999999885432 34556789999999999999999998877543333 44455566677899999999
Q ss_pred HHHHHHcCCCCcHH-HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC
Q 038522 423 YKKMKHEGMVPNDV-TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK 500 (590)
Q Consensus 423 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 500 (590)
+++..+. .|+.+ .-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++....+.++ ...
T Consensus 203 l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999885 55443 3334566788999999999999999976 22223677888999999999999999999988 555
Q ss_pred CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH---hcCChHHHHHHHHHhhhcCCccCCCceEE
Q 038522 501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT---AAGAWDNARKTRKLMEERSLRKNPGYSFL 577 (590)
Q Consensus 501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 577 (590)
+....-..+...-....-.+.|...+.+-+...| +......|..... ..|++.+-.-+++.|....++..|.+.--
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~ 358 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQ 358 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceec
Confidence 6666666666665666777888999999999999 5555555554433 34678899999999999888888877654
Q ss_pred eecCcccc
Q 038522 578 QSSKKNIL 585 (590)
Q Consensus 578 ~~~~~~~~ 585 (590)
--+-+.+.
T Consensus 359 ~CGF~a~~ 366 (389)
T COG2956 359 NCGFTAHT 366 (389)
T ss_pred ccCCccee
Confidence 44444433
No 64
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=3.5e-07 Score=91.60 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=119.4
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522 399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV 478 (590)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 478 (590)
.+..|+.+..+-.+.|...+|++-|-+ ..|+..|.-+++.+.+.|.|++-.+++...+++ ...|.+. ..||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 345788999999999999998877743 247788999999999999999999999988877 6666655 4688
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522 479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK 558 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 558 (590)
-+|++.++..+-.+++. -|+......+..-|...|.++.|.-+|. +.+-|..|+..++..|.++.|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999988877764 5888888899999999999999998887 66778889999999999888876
Q ss_pred HHHHh
Q 038522 559 TRKLM 563 (590)
Q Consensus 559 ~~~~~ 563 (590)
.-++.
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 65543
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=3e-09 Score=102.64 Aligned_cols=172 Identities=19% Similarity=0.245 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhc
Q 038522 369 AAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSH 447 (590)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~ 447 (590)
..+++.|..+|.+.|++++|...+ +.|++++++.... ..|.. .-++.+...|..
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEKLLGA-SHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHH
Confidence 344566667777778877777765 3344555441111 12222 234445556667
Q ss_pred cCChHHHHHHHHHHHhhcC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HhHHHHHHH
Q 038522 448 TGLTCEGWELFTDMINKYR--ILPR----AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPT-ASLWSAILG 511 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 511 (590)
.+.+++|..+++...+.+. ..++ ..+++.|...|...|++++|.++++++ +..+. ...++.+..
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 7777777777766654432 1121 356777888888888888888888776 11222 345677888
Q ss_pred HHHhcCCchHHHHHHHHHhc----CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 512 ACSIYGNTSLGELAARNLFD----MEP---EKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+|.+.++++.|.++|.+... ..| +-..+|..|+.+|..+|++++|.++.+.+..
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888888887763 234 3345688999999999999999999888764
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3.1e-08 Score=92.97 Aligned_cols=488 Identities=11% Similarity=0.009 Sum_probs=232.3
Q ss_pred ccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522 7 NFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86 (590)
Q Consensus 7 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 86 (590)
+..+.++.-|+-+-++..+..-|+..-.-+.+++.-.|.++.|......-.- ...|..+.......+.+..+|+.|..
T Consensus 26 ~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 26 ALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred HHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777744446666666677777777888887776655422 24577778888888999999999999
Q ss_pred HhccCCC-CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCc
Q 038522 87 AFDRMPE-RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVEN 165 (590)
Q Consensus 87 ~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (590)
++..-.. .+...|..-=. ...-..+.+.+....-.+.+ .+-.--..+....+.+.|+..|.+.....+. .
T Consensus 104 vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~ess------ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c 174 (611)
T KOG1173|consen 104 VLGRGHVETNPFSYYEKDA--ANTLELNSAGEDLMINLESS------ICYLRGKVYVALDNREEARDKYKEALLADAK-C 174 (611)
T ss_pred Hhcccchhhcchhhcchhh--hceeccCcccccccccchhc------eeeeeeehhhhhccHHHHHHHHHHHHhcchh-h
Confidence 9984421 11111100000 00000011110000000000 0000001122223344444444443332110 0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhccC-----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038522 166 LFVKSALLDLYAKCGWIEDAWILFERIE-----RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILR 240 (590)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 240 (590)
...+..|+....-. ..+-..+|+.+. ..+......+.....-...-+.....-.+-.-.+..-+......-..
T Consensus 175 ~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad 252 (611)
T KOG1173|consen 175 FEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD 252 (611)
T ss_pred HHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence 01111111111000 011112222110 00110000110000000000000000000001112233333334444
Q ss_pred HhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcCCChHH
Q 038522 241 ASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDDNHSKE 317 (590)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~ 317 (590)
-|-..+++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.++++ ....+|-++..-|...++ .++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k-~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK-YSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC-cHH
Confidence 4556677777777777776654 44555555555566666665555555455532 245677777777777777 888
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522 318 AFDLFKDMILKKMGID-DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG 396 (590)
Q Consensus 318 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (590)
|.+.|.+.... .|. ...|......++..+..++|...+..+-+.-+.
T Consensus 331 ARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G------------------------------ 378 (611)
T KOG1173|consen 331 ARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG------------------------------ 378 (611)
T ss_pred HHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC------------------------------
Confidence 88888876532 221 123444444444555555554444433331111
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc-CC---C-CC
Q 038522 397 DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY-RI---L-PR 470 (590)
Q Consensus 397 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~-~~ 470 (590)
....+--+..-|.+.++..-|.++|.+... +.| |+..++-+.-.....+.+.+|...|+.....- .+ . -.
T Consensus 379 --~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w 454 (611)
T KOG1173|consen 379 --CHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW 454 (611)
T ss_pred --CcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence 001111123334455556666666655553 344 44444444444445556666666666554210 00 1 12
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
..+++.|..+|.+.+++++|+..+++. -.+.+..++.++.-.|...|+++.|...|.+++.+.|++..+-..|..
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 345666667777777777777777776 334466667777777777777777777777777777766555444443
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.4e-10 Score=100.66 Aligned_cols=210 Identities=11% Similarity=0.041 Sum_probs=152.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcchH-HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVISW-TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 444 (590)
.+.+|..|...|.+..+++.|+.+|.+..+ |..+|| ..+.+.+-..++.++|.++|+...+.. +.+......+...
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVG 333 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeec
Confidence 344455566667777777777777776653 333333 345566666777788888888777641 3355566666667
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---CCCC--CHhHHHHHHHHHHhcCCc
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM---NIKP--TASLWSAILGACSIYGNT 519 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~ 519 (590)
|.-.++++-|+.+++++.+- |+. ++..|+.+.-+|.-.++++-++.-|+++ --.| -...|..+.......||+
T Consensus 334 yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred cccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 77777888888888888766 543 5667777777777788888887777776 1123 345688888777889999
Q ss_pred hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc-CCCceEEeec
Q 038522 520 SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK-NPGYSFLQSS 580 (590)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~ 580 (590)
..|.+.++-++..+|++..+++.|+..-.+.|++++|..+++...+..+.- ++.+.+..++
T Consensus 412 nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence 999999999999999999999999999999999999999999998855432 3444444443
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=3.3e-08 Score=96.75 Aligned_cols=267 Identities=11% Similarity=0.033 Sum_probs=140.6
Q ss_pred ccccccCChHHHHHHhhhCCCCCCCcc-cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC----
Q 038522 5 RANFKTGQLKQALKFSLSCPDTLLDPS-TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG---- 79 (590)
Q Consensus 5 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---- 79 (590)
+.+..+|++++|++.++.....-+|.. .+....+.+.+.|+.++|..++..+++.+ +.|..-|..+..+..-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 456778999999999988855555555 44666788889999999999999999987 456666666666653332
Q ss_pred -ChHHHHHHhccCCC--CCccchHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHH
Q 038522 80 -DVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYD-ENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQG 155 (590)
Q Consensus 80 -~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 155 (590)
+.+....+++++.+ |...+...+.-.+.....+ ..+..++..+..+|+++ +|+.+-..|...........++.
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 45666677776654 3333322222222222222 23445666666777643 34444444443333333344444
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc-CCCCc--chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-
Q 038522 156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI-ERKDV--VSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD- 231 (590)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~- 231 (590)
...... ...+.+.... ..- ..|+. .++..+...|...|++++|++.+++.++. .|+
T Consensus 168 ~~~~~l---------------~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 168 EYVNSL---------------ESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHhh---------------cccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 333210 0000000000 000 01121 12233344455555555555555555544 343
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 038522 232 CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT 296 (590)
Q Consensus 232 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 296 (590)
+..|..-.+.+-..|++.+|...++...+.+ .-|..+-+..+..+.+.|++++|.+++....++
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 3334444455555555555555555555544 334445555555556666666666665555433
No 69
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=4.8e-12 Score=81.44 Aligned_cols=50 Identities=30% Similarity=0.640 Sum_probs=44.1
Q ss_pred CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 038522 94 RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR 143 (590)
Q Consensus 94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 143 (590)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999999999999999998888864
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=9.3e-08 Score=84.47 Aligned_cols=196 Identities=9% Similarity=0.007 Sum_probs=128.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------CchHHHHHHHHHHHcCCCCcH-HHHHHHHHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHG-------YGHEAIELYKKMKHEGMVPND-VTFLSLLFA 444 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~ 444 (590)
..|+-.|.+.+++.+|..+..++....+.-|-.-...++..| ...-|.+.|+-.-+.+..-|. .--.++..+
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 345566889999999999999887544444433223333333 344456666555444443332 223445555
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHH-HHHHHHhcCCchH
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSA-ILGACSIYGNTSL 521 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~-l~~~~~~~~~~~~ 521 (590)
+.-...+++.+..+..+..- +..|...--.+..+++..|++.+|.++|-.. +-+ .|..+|.+ |.+.|.+.+.++.
T Consensus 369 fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 66667789999888888753 2333333335788999999999999999888 322 35566655 4566778899887
Q ss_pred HHHHHHHHhcCC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCC
Q 038522 522 GELAARNLFDME-PEK-SVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPG 573 (590)
Q Consensus 522 a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 573 (590)
|-.. +++.+ |.+ -..+...+..|.+.|.+=-|.+.|+.+....+.|+.+
T Consensus 447 AW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred HHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 7554 44444 323 3334556788999999999999999888777666543
No 71
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.9e-07 Score=93.44 Aligned_cols=238 Identities=13% Similarity=0.140 Sum_probs=138.3
Q ss_pred ccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHH
Q 038522 298 IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALID 377 (590)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 377 (590)
+..|+.+..+-.+.+. ..+|++-|-+ .-|+..|..++..+.+.|.++...+++..+.+..-.|.+. +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~-v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGL-VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCc-hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3567777777777777 7777666543 2366778888899999999988888888777766555544 57888
Q ss_pred HHHhcCChHHHHHHHHhcCCCCcch--------------------------HHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 038522 378 MYAKSGEIADANRAFDEMGDKNVIS--------------------------WTSLIAGYAKHGYGHEAIELYKKMKHEGM 431 (590)
Q Consensus 378 ~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 431 (590)
+|++.+++.+-++++.. ||... |..|...+...|++..|...-++.
T Consensus 1175 AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA----- 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA----- 1246 (1666)
T ss_pred HHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence 88888887776665432 33333 333344444444444443332221
Q ss_pred CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHH
Q 038522 432 VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAI 509 (590)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 509 (590)
.+..||..+-.+|...+.+.-| .|..- ++.....-..-++..|...|-+++-+.+++.. |++. ....|..|
T Consensus 1247 -ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1247 -NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred -cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence 2344555555555544433322 12211 22233455666777777777777777777766 4432 34455666
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.-.|.+. ++++..+.++-....-. .--+.+++-.+--|.|..-++.+-.+
T Consensus 1320 aiLYsky-kp~km~EHl~LFwsRvN-----ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSRVN-----IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5555544 55666666655542211 22345555666666666666655433
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=2.5e-07 Score=87.55 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=68.4
Q ss_pred ccccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHH--HHHH--HhcC
Q 038522 5 RANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKV--IIFY--AKVG 79 (590)
Q Consensus 5 ~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g 79 (590)
+.+..+|++++|.+.-.++ ...+-+..++..-+-+....+.+++|+.+.+.-. -..+++.. =.+| .+.+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcc
Confidence 4455667777777777777 4445555566666667777777777764433211 11111111 2222 3567
Q ss_pred ChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038522 80 DVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSG 126 (590)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 126 (590)
..++|+..++.....+..+...-.+.+-+.|++++|+++|+.+.+++
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 77777777775444444455555666777777777777777776654
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.29 E-value=2.5e-09 Score=108.49 Aligned_cols=243 Identities=11% Similarity=0.036 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh---------chhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC
Q 038522 315 SKEAFDLFKDMILKKMGIDD-VILCLMLNICA---------NVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGE 384 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (590)
.++|..+|++.++. .|+. ..+..+..++. ..++++.|...++.+.+..+. +...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 56778888877754 4443 23333332222 234578888888888887654 66777888888999999
Q ss_pred hHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhccCChHHHHHHHHH
Q 038522 385 IADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSHTGLTCEGWELFTD 460 (590)
Q Consensus 385 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 460 (590)
+++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999774 4 3457888889999999999999999999885 5643 3333444456678999999999999
Q ss_pred HHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh-HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 461 MINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS-LWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 461 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
+.+. . .| +...+..+..++...|++++|...++++ ...|+.. .++.+...+...| +.|...++.+.+..-..+
T Consensus 432 ~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 8764 2 34 3555777888899999999999999988 4455543 4455556666666 478888888775443233
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
.....+..+|.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3333477788889998888887 7777654
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.28 E-value=2.9e-07 Score=88.09 Aligned_cols=448 Identities=10% Similarity=-0.008 Sum_probs=246.0
Q ss_pred cccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522 8 FKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86 (590)
Q Consensus 8 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 86 (590)
...+++...+++.+.+ ...+....+.....-.+...|+-++|.......++.+ ..+.+.|..+.-.+-...++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 3455666666666666 4333444444444445556677888888777776654 4466777777777777778888888
Q ss_pred HhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC-C
Q 038522 87 AFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR-F 162 (590)
Q Consensus 87 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~ 162 (590)
.|..... .|...|--+.-.=+..|+++........+.+.. +-....|.....+.--.|+...|..+++...+.. -
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8877543 344555544444456677777777777766642 2234456666667777788888888888887754 2
Q ss_pred CCchHHHHHH------HHHHHhcCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 038522 163 VENLFVKSAL------LDLYAKCGWIEDAWILFERIERK---DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF 233 (590)
Q Consensus 163 ~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 233 (590)
.|+...+... .....+.|..++|.+.+...... ....-..-...+.+.+++++|..++..+... .||..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~ 253 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL 253 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence 4555444332 23445667777777777665432 2222334456677888888888888888876 57776
Q ss_pred hHHHHHHHhc-cC-CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhccCCC-ccchHHHHHHHH
Q 038522 234 TLGSILRASV-GG-IELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI-RSAYQLYRSMLKTD-IISCTALISGFA 309 (590)
Q Consensus 234 ~~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~-~~~~~~l~~~~~ 309 (590)
.|...+..+. +. +..+....+|....+. .|....-.-+--.......+ +....++....+.+ +.++..+...+-
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk 331 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK 331 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence 6665555443 22 2223333455444332 11111000000001111111 12222333332222 222333332222
Q ss_pred hcCCChHHHHHHHHHHHH----cC---------C-CCCHH--HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHH
Q 038522 310 RDDNHSKEAFDLFKDMIL----KK---------M-GIDDV--ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGN 373 (590)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~----~~---------~-~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (590)
.... .+-..++...+.. .| + +|... |+-.+...+-..|+++.|..+++.++...+. -+..|.
T Consensus 332 ~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~ 409 (700)
T KOG1156|consen 332 DPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYL 409 (700)
T ss_pred chhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHH
Confidence 1111 1111111111111 11 0 33332 3335666777788888888888877776432 344555
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-----cHHHHHHH---H
Q 038522 374 ALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-----NDVTFLSL---L 442 (590)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~l---l 442 (590)
.-.+++...|+++.|..++++..+ +|...=.--..-..+.++.++|.++.....+.|... +....+.. .
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g 489 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG 489 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence 556777888888888888887764 333322234555567788888888888877766411 11111111 2
Q ss_pred HHhhccCChHHHHHHHHHHHh
Q 038522 443 FACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~ 463 (590)
.+|.+.|++..|++-|..+.+
T Consensus 490 ~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 490 EAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 356666777666665555443
No 75
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=1.1e-11 Score=79.71 Aligned_cols=50 Identities=30% Similarity=0.626 Sum_probs=43.6
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 038522 195 KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVG 244 (590)
Q Consensus 195 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 244 (590)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888899999999999999988999999999888888864
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=2.3e-07 Score=90.98 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=41.1
Q ss_pred CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 447899999999999999999999999999999999999988764
No 77
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=8.9e-10 Score=102.05 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhcc
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHT 448 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 448 (590)
..+...|.+.|+.++|...|++..+ | +...|+.+...+...|++++|...|++..+. .| +...+..+..++...
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 3334444444555555544444432 1 2334444555555555555555555555442 33 233444444444445
Q ss_pred CChHHHHHHHHHHH
Q 038522 449 GLTCEGWELFTDMI 462 (590)
Q Consensus 449 ~~~~~a~~~~~~~~ 462 (590)
|++++|.+.++...
T Consensus 146 g~~~eA~~~~~~al 159 (296)
T PRK11189 146 GRYELAQDDLLAFY 159 (296)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555554
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=2.7e-09 Score=108.21 Aligned_cols=211 Identities=13% Similarity=0.029 Sum_probs=165.7
Q ss_pred hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh---------cCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcC
Q 038522 347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK---------SGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHG 414 (590)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 414 (590)
.++++.|...++...+..+. +...+..+..+|.. .+++++|...+++..+ | +...+..+...+...|
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 35678899999999887654 34555555555442 3458899999998874 3 5567888888889999
Q ss_pred CchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 038522 415 YGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYN 492 (590)
Q Consensus 415 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 492 (590)
++++|...+++..+. .| +...+..+...+...|++++|...+++..+. .|+. ..+..++..+...|++++|..
T Consensus 353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHH
Confidence 999999999999986 56 4667888888999999999999999999854 5553 233344556777899999999
Q ss_pred HHHhc--CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 493 MIRQM--NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 493 ~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+++. ..+|+ +..+..+..++...|++++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 99987 32454 4456777788889999999999999998888988888888888888888 488888887766
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=5e-09 Score=94.62 Aligned_cols=192 Identities=15% Similarity=0.122 Sum_probs=122.0
Q ss_pred HHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc
Q 038522 340 MLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYG 416 (590)
Q Consensus 340 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 416 (590)
+...+...|+++.|...++...+..+ .+...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence 33344444444444444444433321 1344555566666777777777777766552 2334566666777777788
Q ss_pred hHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522 417 HEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIR 495 (590)
Q Consensus 417 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (590)
++|.+.+++..+....| ....+..+..++...|++++|.+.+++..+. .+.+...+..+...+...|++++|.+.++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 193 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLE 193 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888887777642222 3445566667777888888888888887754 12235567777788888888888888888
Q ss_pred hc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 496 QM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 496 ~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
+. .. +++...+..+...+...|+.+.|....+.+.+..|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 194 RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 76 22 33455566666777778888888888777665543
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.22 E-value=1.8e-09 Score=89.55 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=119.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDL 480 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 480 (590)
...|..+|...|+...|..-+++.++. .| +..++..+...|.+.|..+.|.+.|+...+ +.| +..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 445666777788888888888887775 45 456677777777788888888888888774 344 36677777777
Q ss_pred HHhcCChHHHHHHHHhcCCCC----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522 481 FARRGQLESAYNMIRQMNIKP----TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 556 (590)
+|..|++++|...|+++-..| -..+|..+.....+.|+.+.|...+++.++.+|+.+.....++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 788888888888888772222 2356777776667788888888888888888888888888888888888888888
Q ss_pred HHHHHHhhhcCC
Q 038522 557 RKTRKLMEERSL 568 (590)
Q Consensus 557 ~~~~~~~~~~~~ 568 (590)
..+++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888887766554
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.21 E-value=1.4e-07 Score=92.09 Aligned_cols=500 Identities=12% Similarity=0.017 Sum_probs=261.2
Q ss_pred ccccCChHHHHHHhhhC--CCCCCCcccHHHHHHH---hhcccchhHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHH
Q 038522 7 NFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQF---CIDKKAERQAHLIHAHIITNGYESN-----LHLSTKVIIFYA 76 (590)
Q Consensus 7 ~~~~g~~~~a~~~~~~~--~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~ 76 (590)
+...++++.++.-|.+. .+.+.++.++-.+... +.-.++.+++ ++-.++.....|. ...+..++.-+.
T Consensus 237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~ 314 (799)
T KOG4162|consen 237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKL 314 (799)
T ss_pred hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 34556677777777777 5555555555554432 2334455544 2222222222222 111111111122
Q ss_pred hcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522 77 KVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGS 156 (590)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 156 (590)
+.+++. -+...|..|.-++.+.|+++.+.+.|++.... ..-..+.|..+-..+...|.-..|..+++.
T Consensus 315 r~~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 315 RLKKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred HHhhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 222211 12333444444555555555555555555432 223444555555555555555555555554
Q ss_pred HHhcCCCC-chHHHHHHHHHHHh-cCChHHHHHHHhccCC--------CCcchHHHHHHHHHh-----------cCCchH
Q 038522 157 IQKGRFVE-NLFVKSALLDLYAK-CGWIEDAWILFERIER--------KDVVSWNAMIGGLAM-----------QGFNDD 215 (590)
Q Consensus 157 ~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~-----------~~~~~~ 215 (590)
-......| +...+...-..|.+ .+..++++.+-.++.. -....|..+.-+|.. .....+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 44432222 22222222222222 2334443333332221 112222222222221 111245
Q ss_pred HHHHHHHHHHcCC-CCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 038522 216 SFWLFRSMMRQGM-KPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML 294 (590)
Q Consensus 216 a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 294 (590)
+++.+++..+.+. .|+...|.. --++-.++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...
T Consensus 463 slqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 6667777665542 232222222 2345667788888888888877667777778877777888888888888777663
Q ss_pred CCCccchHH---HHHHHHhcCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh--CCCc
Q 038522 295 KTDIISCTA---LISGFARDDNHSKEAFDLFKDMILK--KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKY--QSSY 367 (590)
Q Consensus 295 ~~~~~~~~~---l~~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~ 367 (590)
..-...++. -+..-..-++ .++++.....+..- ...|-..+ ++-....+....+.-. ...-
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~-~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFND-REEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHhhhhhhhchhhhhhhhhccc-HHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcccccc
Confidence 221111111 1111122344 55555555544321 00000000 0011111111111000 1111
Q ss_pred chhHHHHHHHHHH---hcCChHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHH
Q 038522 368 DAAVGNALIDMYA---KSGEIADANRAFDEMGDKNV------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTF 438 (590)
Q Consensus 368 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 438 (590)
.+.++..+..... +.-..+.....+.....|+. ..|......+.+.++.++|...+.+.... .+-....|
T Consensus 609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~ 687 (799)
T KOG4162|consen 609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVY 687 (799)
T ss_pred cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHH
Confidence 1222222222111 11111112122222222332 24566777888899999999888888764 23356677
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhc-CCCC-CHhHHHHHHHHH
Q 038522 439 LSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYN--MIRQM-NIKP-TASLWSAILGAC 513 (590)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~ 513 (590)
......+...|.+++|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .+.| +...|..+...+
T Consensus 688 ~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 688 YLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF 764 (799)
T ss_pred HHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 777778888999999999999888 56776 6788999999999998777777 88888 5566 678899999999
Q ss_pred HhcCCchHHHHHHHHHhcCCCCCcc
Q 038522 514 SIYGNTSLGELAARNLFDMEPEKSV 538 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p~~~~ 538 (590)
.+.|+.++|-+.|..+.++++.+|.
T Consensus 765 k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999876654
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.18 E-value=2.6e-07 Score=89.50 Aligned_cols=337 Identities=15% Similarity=0.112 Sum_probs=191.3
Q ss_pred HHHHHHhcCChHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChh
Q 038522 172 LLDLYAKCGWIEDAWILFERI--ERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELM 249 (590)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 249 (590)
-|..|.+.|...+|.+....- ...|......+..++.+..-+++|-++|+++.. +...+..+.+..-+.
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~ 691 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFG 691 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHH
Confidence 345566666655554433211 113444444555555555556666666655542 112223333333333
Q ss_pred HHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038522 250 KISQIHDLIIKLGLESSNKLT-GSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILK 328 (590)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~ 328 (590)
+|.++-+.. ++..+... ..-...+...|+++.|..-|-+.. ..-..+.+-..... +.+|+.+++.++++
T Consensus 692 kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~ake-w~kai~ildniqdq 761 (1636)
T KOG3616|consen 692 KAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKE-WKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhh-hhhhHhHHHHhhhh
Confidence 333332211 11111111 111222344556666655543321 11223344455666 88888888887765
Q ss_pred CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--cchHHHH
Q 038522 329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN--VISWTSL 406 (590)
Q Consensus 329 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l 406 (590)
. .-+.-|..+...|++.|+++.|+++|... ..++-.|.+|.+.|++++|.++-++...|. +..|-+-
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 3 33445667778888888888888887532 234667788888888888888888877653 3456666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
..-+-..|++.+|.++|-... .|+. .+..|-+.|..+..+++.++-... .-..|...+..-|-..|+
T Consensus 831 aedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~ 897 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGD 897 (1636)
T ss_pred HHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccC
Confidence 666677888888877764432 3442 245577777777777766544321 124566677778888899
Q ss_pred hHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 487 LESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 487 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
+.+|.+.|-+.+ -|.+-++.|...+.+++|.++.+ .....|..-.....|+-.-.| +.|.+++++
T Consensus 898 lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 898 LKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred hhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 999988887764 35666666767777766655543 223334444444444444444 467787775
No 83
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.4e-09 Score=94.66 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=166.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcc--CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchh
Q 038522 271 GSLIDVYAKYGSIRSAYQLYRSML--KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVA 348 (590)
Q Consensus 271 ~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 348 (590)
+.+.++|.+.|.+.+|++.|+... .+-+.||-.|-..|.+..+ +..|+.++.+-++. .|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQ-P~~AL~~~~~gld~--fP~~VT~----------- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQ-PERALLVIGEGLDS--FPFDVTY----------- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhcc-HHHHHHHHhhhhhc--CCchhhh-----------
Confidence 345566666666666666666552 3445566666666666666 66666666665543 3443333
Q ss_pred hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038522 349 SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKK 425 (590)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 425 (590)
..-..+.+...++.++|.++|+...+ .|+.....+...|.-.++++-|+.+|++
T Consensus 293 -----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 293 -----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred -----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 23445566666777888888877664 3455566667778888999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc--CCCC
Q 038522 426 MKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQLESAYNMIRQM--NIKP 501 (590)
Q Consensus 426 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p 501 (590)
+.+.|+ -++..|+.+.-+|...+.++-++.-|++.... .-.|+ .++|-.+.......|++.-|.+-|+-. ....
T Consensus 350 iLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~ 427 (478)
T KOG1129|consen 350 ILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ 427 (478)
T ss_pred HHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence 999884 56778888888888999999999999988875 44454 567877887888889999999999887 3333
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY 540 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 540 (590)
+...++.|.-.-.+.|++++|..++..+....|.-....
T Consensus 428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 567888888888899999999999999999998544333
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.11 E-value=1.3e-07 Score=91.54 Aligned_cols=237 Identities=19% Similarity=0.192 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhccCC----------CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHc---CCCCC-
Q 038522 167 FVKSALLDLYAKCGWIEDAWILFERIER----------KDVV-SWNAMIGGLAMQGFNDDSFWLFRSMMRQ---GMKPD- 231 (590)
Q Consensus 167 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~- 231 (590)
.+...+...|...|++++|..+++...+ +.+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455566777777777777776665432 1111 2334566788888888888888887542 01111
Q ss_pred ---hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---cCCCc-cchHHH
Q 038522 232 ---CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM---LKTDI-ISCTAL 304 (590)
Q Consensus 232 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~-~~~~~l 304 (590)
..+++.|-.+|.+.|++++|...++...+. ++.. ..+.+ ..++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 223344444455555555555554443321 1110 00111 112333
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 038522 305 ISGFARDDNHSKEAFDLFKDMILK---KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK 381 (590)
Q Consensus 305 ~~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (590)
...+...++ +++|..+++...+. -..++. ..-..+++.+...|.+
T Consensus 332 ~~~~~~~~~-~Eea~~l~q~al~i~~~~~g~~~-------------------------------~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 332 AAILQSMNE-YEEAKKLLQKALKIYLDAPGEDN-------------------------------VNLAKIYANLAELYLK 379 (508)
T ss_pred HHHHHHhcc-hhHHHHHHHHHHHHHHhhccccc-------------------------------hHHHHHHHHHHHHHHH
Confidence 444444455 66666666644321 011111 1134556667777777
Q ss_pred cCChHHHHHHHHhcCCC--------C---cchHHHHHHHHHhcCCchHHHHHHHHHH----HcCC-CCc-HHHHHHHHHH
Q 038522 382 SGEIADANRAFDEMGDK--------N---VISWTSLIAGYAKHGYGHEAIELYKKMK----HEGM-VPN-DVTFLSLLFA 444 (590)
Q Consensus 382 ~~~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~g~-~p~-~~~~~~ll~~ 444 (590)
.|++++|+++++++.+. + -..++.|...|.+.+++.+|.++|.+.. ..|. .|+ ..+|..|...
T Consensus 380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~ 459 (508)
T KOG1840|consen 380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL 459 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence 77777777777766520 1 2355667777777777777777776643 2221 222 4577888888
Q ss_pred hhccCChHHHHHHHHHHHh
Q 038522 445 CSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~ 463 (590)
|...|+++.|.++.+.+..
T Consensus 460 Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 460 YRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHcccHHHHHHHHHHHHH
Confidence 8888888888888777653
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=7.5e-07 Score=87.45 Aligned_cols=241 Identities=13% Similarity=0.110 Sum_probs=160.4
Q ss_pred CCchhHHHHHHH--HHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHc-C--------CCCC
Q 038522 62 ESNLHLSTKVII--FYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRS-G--------VRAN 130 (590)
Q Consensus 62 ~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~ 130 (590)
.-|..|...+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+.++.+-|.-.+..|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 346667667665 3667788888887776665 3456888999999888888887777766532 1 1222
Q ss_pred HhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-CCcchHHHHHHHHHh
Q 038522 131 QFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER-KDVVSWNAMIGGLAM 209 (590)
Q Consensus 131 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 209 (590)
.+=.-+.-.....|.+++|+.+|..-... ..|-..|-..|.|++|.++-+.-.+ .=..+|.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22222333345778899999999887664 3455667788999999888765332 122356666666777
Q ss_pred cCCchHHHHHHHHH----------HHcC---------CCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHH
Q 038522 210 QGFNDDSFWLFRSM----------MRQG---------MKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLT 270 (590)
Q Consensus 210 ~~~~~~a~~~~~~m----------~~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (590)
.++.+.|++.|++. .... -..|...|......+...|+.+.|..+|....+ |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 78888888877653 2111 012334445555556667777777777776553 4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHH
Q 038522 271 GSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326 (590)
Q Consensus 271 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 326 (590)
.++++..|-.|+.++|-++-++- .|......+.+.|-..|+ +.+|..+|.+.+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~-v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGD-VVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHH-HHHHHHHHHHHH
Confidence 45666677778888887776553 355667778888888888 888988888765
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=1.1e-06 Score=85.19 Aligned_cols=254 Identities=17% Similarity=0.103 Sum_probs=121.9
Q ss_pred HHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHH
Q 038522 36 LLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENA 115 (590)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 115 (590)
.+..|....+++++..+-+. .|.+.-...-.+.++++...|+-++|-++ +..+..+. +-|+.|.+.|.+..|
T Consensus 563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~sdgd~l-aaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL----KESDGDGL-AAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh----ccccCccH-HHHHHHHHcCCchHH
Confidence 34455555666666655332 34333334444455555556666655433 22222222 346667777777666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC
Q 038522 116 LLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK 195 (590)
Q Consensus 116 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 195 (590)
.+....-.+ +..|......+..++.+..-++.|-.+|+.+..- ..-+.+|-+-.-+.+|.++-+-.-..
T Consensus 635 ~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfafp~ 703 (1636)
T KOG3616|consen 635 ARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAFPE 703 (1636)
T ss_pred HHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhCcH
Confidence 554322111 2345555555555555555555555555554321 11223333323344444443322111
Q ss_pred Ccc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 038522 196 DVV-SWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLI 274 (590)
Q Consensus 196 ~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 274 (590)
.++ .-...-..+.+.|+++.|+.-|-+.. .....+.+....+.+.+|..+++.+.... ....-|..+.
T Consensus 704 evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~ia 772 (1636)
T KOG3616|consen 704 EVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIA 772 (1636)
T ss_pred HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHH
Confidence 111 11122233444555555555543321 12233444555566666666666555442 2223445556
Q ss_pred HHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHH
Q 038522 275 DVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDM 325 (590)
Q Consensus 275 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 325 (590)
+.|...|+++.|+++|.+. ..++-.|..|.+.|+ +..|.++-.+.
T Consensus 773 dhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~k-w~da~kla~e~ 817 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGK-WEDAFKLAEEC 817 (1636)
T ss_pred HHhccchhHHHHHHHHHhc-----chhHHHHHHHhcccc-HHHHHHHHHHh
Confidence 6666666666666666543 224445566666666 66666665544
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=9.2e-06 Score=73.79 Aligned_cols=263 Identities=10% Similarity=0.045 Sum_probs=161.9
Q ss_pred ChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC---ccchHHHHHH
Q 038522 231 DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD---IISCTALISG 307 (590)
Q Consensus 231 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~ 307 (590)
|......+...+...|+.+.+...|+.....+ +-+..........+...|+.++...+...+...+ ...|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 44444555555566666666666666555432 1111112222233455566666665555553332 2222222233
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHH
Q 038522 308 FARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD 387 (590)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 387 (590)
+...++ +..|+.+-++.++.. +-+...+..--..+...++.+.|.-.|+.++...+ .+...|.-|++.|...|++.+
T Consensus 310 l~~~K~-~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 310 LYDEKK-FERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhh-HHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHH
Confidence 334455 667777766665432 12223333333455566777777777776665542 367888888999988888888
Q ss_pred HHHHHHhcC---CCCcchHHHHH-HHHH-hcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522 388 ANRAFDEMG---DKNVISWTSLI-AGYA-KHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDM 461 (590)
Q Consensus 388 A~~~~~~~~---~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 461 (590)
|.-+-+... ..+..+.+.+. ..+. ...--++|..++++... +.|+ ....+.+...|...|..+.++.++++.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 876655433 22333333331 2221 12224788888888776 4776 346677788899999999999999999
Q ss_pred HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC
Q 038522 462 INKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT 502 (590)
Q Consensus 462 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 502 (590)
.. ..||....+.|.+.+...+.+++|++.|..+ .+.|+
T Consensus 465 L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 465 LI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred Hh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 84 4799999999999999999999999999887 66664
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.05 E-value=1.3e-07 Score=87.74 Aligned_cols=228 Identities=10% Similarity=-0.007 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 038522 315 SKEAFDLFKDMILKK-MGID--DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRA 391 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 391 (590)
.+.++.-+.+++... ..|+ ...+......+...|+.+.|...++...+..+. ++..|+.+...+...|++++|...
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 566666666666432 2222 233555555667778888888888777776543 678888999999999999999999
Q ss_pred HHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC
Q 038522 392 FDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRIL 468 (590)
Q Consensus 392 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 468 (590)
|++..+ | +..+|..+...+...|++++|++.+++..+. .|+..........+...++.++|...+++.... ..
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~ 196 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LD 196 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CC
Confidence 998864 4 3467888888899999999999999999875 564332222222344667899999999776543 23
Q ss_pred CChhHHHHHHHHHHhcCChHHH--HHHHHhc-CCC----C-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC-CCcch
Q 038522 469 PRAEHFSCVVDLFARRGQLESA--YNMIRQM-NIK----P-TASLWSAILGACSIYGNTSLGELAARNLFDMEP-EKSVN 539 (590)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~ 539 (590)
|+... ..+. ....|+..++ .+.+.+. ... | ....|..+...+...|++++|+..|+++++.+| +....
T Consensus 197 ~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~ 273 (296)
T PRK11189 197 KEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH 273 (296)
T ss_pred ccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence 33222 2222 3335555433 3333322 111 1 235788889999999999999999999999997 44444
Q ss_pred HHHHHHHHHhc
Q 038522 540 YVVLSNIYTAA 550 (590)
Q Consensus 540 ~~~l~~~~~~~ 550 (590)
...++......
T Consensus 274 ~~~~~e~~~~~ 284 (296)
T PRK11189 274 RYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHH
Confidence 44455544433
No 89
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=1.9e-08 Score=91.64 Aligned_cols=147 Identities=11% Similarity=0.072 Sum_probs=80.1
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH----hcC
Q 038522 410 YAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA----RRG 485 (590)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 485 (590)
+...|++++|++++++. .+.......+..+.+.++++.|.+.++.|.+ ...| .+...+..++. -.+
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCch
Confidence 33445555555555431 2334444455556666666666666666652 2222 22222333322 223
Q ss_pred ChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHHHH
Q 038522 486 QLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW-DNARKTRKL 562 (590)
Q Consensus 486 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 562 (590)
++.+|..+|+++ ...+++.+.+.+..++...|++++|.++++++++.+|.++.++..++.+....|+. +.+.+++.+
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 566666666666 34456666666666666777777777777777777777777777777666666666 455666666
Q ss_pred hhhc
Q 038522 563 MEER 566 (590)
Q Consensus 563 ~~~~ 566 (590)
++..
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 6553
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=9.5e-09 Score=96.76 Aligned_cols=215 Identities=16% Similarity=0.130 Sum_probs=167.4
Q ss_pred hchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHH
Q 038522 345 ANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK---NVISWTSLIAGYAKHGYGHEAIE 421 (590)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 421 (590)
.+.|++..|.-.|+..++..+. +...|..|.......++-..|+.-+.+..+- |....-.|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4556677777777777776654 6777777877888888888888888877753 45567777788888888889999
Q ss_pred HHHHHHHcCCCCcHHHHHHHH-----------HHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 038522 422 LYKKMKHEGMVPNDVTFLSLL-----------FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESA 490 (590)
Q Consensus 422 ~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 490 (590)
.++.-+... |.. ..+. ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++++|
T Consensus 375 ~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 375 MLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 988876532 110 0000 112222234455666666665546668889999999999999999999
Q ss_pred HHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 491 YNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 491 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+-|+.+ ..+| |...||-|...+....+.++|+..|.+++++.|.-..+.+.|+..|+..|.|+||.+.|-..+.
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999998 6667 5678999999999999999999999999999999999999999999999999999999988766
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.8e-07 Score=84.85 Aligned_cols=399 Identities=13% Similarity=0.039 Sum_probs=196.2
Q ss_pred HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CC-cchHHHHHHHHHhcCCchH
Q 038522 139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KD-VVSWNAMIGGLAMQGFNDD 215 (590)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~ 215 (590)
.+....|+++.|...|-..+... +++...|..-..+|+..|++++|++=-.+-.+ |+ ...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34556778888888887777764 34677777777788888888777665544433 33 3457777777777778888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHH-----HHHHHhcCChHHHHHHH
Q 038522 216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSL-----IDVYAKYGSIRSAYQLY 290 (590)
Q Consensus 216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~ 290 (590)
|+.-|.+-.+.. +-+...+..+..+. ..+.+. +. .-.++..+..+ .+.+.....+..-++.+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 887777766542 22344444444444 111000 00 01111111111 11111111111111111
Q ss_pred HhccCCCccc---hHHHHHHHHhcCCChHHH-HHHHHHH-HHcCCCC----------------------CHHHHHHHHHH
Q 038522 291 RSMLKTDIIS---CTALISGFARDDNHSKEA-FDLFKDM-ILKKMGI----------------------DDVILCLMLNI 343 (590)
Q Consensus 291 ~~~~~~~~~~---~~~l~~~~~~~~~~~~~a-~~~~~~~-~~~~~~p----------------------~~~~~~~ll~~ 343 (590)
..-+. +... ...++.+...... .+.- ..--..+ ...+..| -..-...+..+
T Consensus 156 ~~~p~-~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 156 QKNPT-SLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred hcCcH-hhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 11100 0000 0111111111000 0000 0000000 0000011 01123345566
Q ss_pred HhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHH-------HHHHHHHhc
Q 038522 344 CANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWT-------SLIAGYAKH 413 (590)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~l~~~~~~~ 413 (590)
..+..+++.+.+-+....... -++.-++....+|...|.+......-+...+... .-|+ .+..++.+.
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 666777777877777777766 4566667777788888877777666655443211 1222 234456667
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 038522 414 GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYN 492 (590)
Q Consensus 414 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 492 (590)
++++.++..|++.......|+..+ +....+++....+... -+.|.. .-...-...+.+.|++..|+.
T Consensus 312 ~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 788888888888766544443322 1112222222222222 222321 111112344555666666666
Q ss_pred HHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 493 MIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 493 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
.|.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++..+..
T Consensus 380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66665 2223 445555555555666666666666666666666666666666666666666666666666554433
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.00 E-value=4.6e-06 Score=83.97 Aligned_cols=275 Identities=11% Similarity=-0.038 Sum_probs=143.5
Q ss_pred HHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHH
Q 038522 285 SAYQLYRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAF 361 (590)
Q Consensus 285 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 361 (590)
.|...++..+ ..+...||.|... ...|+ +.-+..-|-+-.... +....+|..+--.+....+++.|...+....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn-va~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGN-VACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccch-hhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 4555555553 2344556555444 44445 555555555444331 3344556666666677777888888777776
Q ss_pred HhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC-----C---CCcchHHHHHHHHHhcCCchHHHHHH----------
Q 038522 362 KYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG-----D---KNVISWTSLIAGYAKHGYGHEAIELY---------- 423 (590)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~a~~~~---------- 423 (590)
...+. +...+--........|+.-++..+|..-. + ++..-|-........+|+.++-+..-
T Consensus 878 SLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 65543 22222222222234566666666665411 1 23333333334444555544433332
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCC
Q 038522 424 KKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFS----CVVDLFARRGQLESAYNMIRQMNI 499 (590)
Q Consensus 424 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~ 499 (590)
++... |.+-+...|..........+.+..|.+...+...-...+-+...|+ .+.+.++..|.++.|..-+.....
T Consensus 957 ~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen 957 SYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred HHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence 23332 2233456666666666667777776666655543212233444444 334455666777766655544422
Q ss_pred CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..+..+...-+.. .-.|+++++.+.|++++.+...+ ......++.+...+|..+.|+.++-+...
T Consensus 1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 2233222222222 34578888888888887554322 23445566667777788888877766654
No 93
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=1.7e-07 Score=78.17 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhcc
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHT 448 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 448 (590)
..|.-.|...|++..|..-+++..+.|+ .+|..+...|.+.|+.+.|.+.|++..+. .| +....|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence 4456677788888888888887774333 46777777788888888888888887764 55 455666666667777
Q ss_pred CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHH
Q 038522 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAA 526 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 526 (590)
|.+++|.+.|++........--..+|..+.-+..+.|+.+.|.+.|++. ...| .+.+...+.......|++..|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 7888888888888765222223567777777777888888888888777 4344 3456667777777888888888888
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 527 RNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 527 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
++.....+.....+...+++-...|+-+.|.++=..+.+
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 888766665666676677777777887777776554433
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=2.7e-08 Score=90.67 Aligned_cols=157 Identities=11% Similarity=0.112 Sum_probs=106.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh----ccCC
Q 038522 375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS----HTGL 450 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~ 450 (590)
...++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 344556677788877777665 45556666778888888888888888888763 3443 3333444333 2335
Q ss_pred hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCc-hHHHHHHH
Q 038522 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNT-SLGELAAR 527 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~ 527 (590)
+.+|..+|+++.++ ..+++.+.+.+..++...|++++|.+++++. ...| ++.++..++-.....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 88888888888764 4567788888888888889999998888887 3333 556666677666777777 66778888
Q ss_pred HHhcCCCCCcc
Q 038522 528 NLFDMEPEKSV 538 (590)
Q Consensus 528 ~~~~~~p~~~~ 538 (590)
++....|+++.
T Consensus 261 qL~~~~p~h~~ 271 (290)
T PF04733_consen 261 QLKQSNPNHPL 271 (290)
T ss_dssp HCHHHTTTSHH
T ss_pred HHHHhCCCChH
Confidence 88888885543
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.6e-07 Score=84.98 Aligned_cols=177 Identities=12% Similarity=0.082 Sum_probs=111.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHhhccCChHH
Q 038522 375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDV-TFLSLLFACSHTGLTCE 453 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~ 453 (590)
+..+|.+.++++.|+..|++...+... -....+....+++....+...- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 334566667777787777775422111 0111222333444444444332 234321 11222556778889999
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522 454 GWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 531 (590)
|+..|.+++++ .+-|...|..-.-+|.+.|.+.+|++-.+.. ...|+ ...|.--..++....+++.|.+.|++.++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888865 2335778888888888999988888877776 44444 33454445555666789999999999999
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522 532 MEPEKSVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 532 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
.+|.+..+...+.+++..+.......++.
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 99988888888887777543333334433
No 96
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=9.2e-05 Score=81.38 Aligned_cols=155 Identities=8% Similarity=-0.077 Sum_probs=72.5
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCCcch--HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCCh
Q 038522 171 ALLDLYAKCGWIEDAWILFERIERKDVVS--WNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIEL 248 (590)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 248 (590)
.....+...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|++
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 34445666777777766665554332111 1112233445677776666665542211111222222333344566777
Q ss_pred hHHHHHHHHHHHhCC------CCC--hhHHHHHHHHHHhcCChHHHHHHHHhccC--C--Cc----cchHHHHHHHHhcC
Q 038522 249 MKISQIHDLIIKLGL------ESS--NKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T--DI----ISCTALISGFARDD 312 (590)
Q Consensus 249 ~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~ 312 (590)
+++...+......-- .+. ......+...+...|+++.|...+++... + +. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 777777776654310 011 11112223334556666666666655421 1 11 11223333344455
Q ss_pred CChHHHHHHHHHHH
Q 038522 313 NHSKEAFDLFKDMI 326 (590)
Q Consensus 313 ~~~~~a~~~~~~~~ 326 (590)
+ +++|...+.+..
T Consensus 506 ~-~~~A~~~~~~al 518 (903)
T PRK04841 506 E-LARALAMMQQTE 518 (903)
T ss_pred C-HHHHHHHHHHHH
Confidence 5 666666655554
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=3.3e-06 Score=73.17 Aligned_cols=190 Identities=11% Similarity=0.012 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhc
Q 038522 68 STKVIIFYAKVGDVLSARKAFDRMPER---NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSA-LRACAR 143 (590)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~ 143 (590)
+.+.+..+++..++++|++++....++ +....+.|..+|-...++..|-+.++++-. ..|...-|..- ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence 344444455555666666655554442 333455555566666666666666666654 23444433321 223445
Q ss_pred cCchhhHHHHHHHHHhcCCCCchHHHHHHHH--HHHhcCChHHHHHHHhccC-CCCcchHHHHHHHHHhcCCchHHHHHH
Q 038522 144 MRWLQGGRMIQGSIQKGRFVENLFVKSALLD--LYAKCGWIEDAWILFERIE-RKDVVSWNAMIGGLAMQGFNDDSFWLF 220 (590)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 220 (590)
.+.+..|..+...|.+. |+...-..-+. ..-..+++..+..+.+..+ +.+..+.+...-...+.|+++.|++-|
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55566666665555442 11111111111 1223466666777777666 344455555555556677777777777
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522 221 RSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGL 263 (590)
Q Consensus 221 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (590)
+...+-+--.....|+..+.. -+.|+++.|.+...+++++|+
T Consensus 168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence 776655434444556654433 355677777777777776664
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=1.9e-06 Score=74.66 Aligned_cols=417 Identities=12% Similarity=0.054 Sum_probs=245.1
Q ss_pred cCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHH
Q 038522 125 SGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNA 202 (590)
Q Consensus 125 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~ 202 (590)
.|+.....-+.+++..+.+..++..|.+++..-.+.. +.+....+.|..+|-...++..|-..++.+.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444455567788888888889999999888777763 33667788888889899999999999988875 43333433
Q ss_pred -HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH--hccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 038522 203 -MIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRA--SVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK 279 (590)
Q Consensus 203 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (590)
-...+.+.+.+..|+++...|.+. |+...-..-+.+ .-+.+++..+..++++.-.. .+..+.+.......+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeec
Confidence 245677888999999998888653 332222222222 23567777777777665432 233344444555667
Q ss_pred cCChHHHHHHHHhccCC----CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhchhhhHhHH
Q 038522 280 YGSIRSAYQLYRSMLKT----DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVI-LCLMLNICANVASLNLGR 354 (590)
Q Consensus 280 ~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~ 354 (590)
.|+++.|.+-|+...+- ....||..+..|. .++ ++.|+++..+++++|++..+.. ......+- ....+..-.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~q-yasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~ 233 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQ-YASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTL 233 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhh-HHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchH
Confidence 88888888888777432 3345666655554 455 7888888888888876532210 00000000 000000000
Q ss_pred HHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 038522 355 QIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHE 429 (590)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 429 (590)
.+.. +.-+..+|.-...+.+.|+++.|.+-+-.|+. .|++|...+.-.- ..+++.+..+-++-+.+.
T Consensus 234 ~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~ 305 (459)
T KOG4340|consen 234 VLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ 305 (459)
T ss_pred HHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence 0000 00122334445566789999999999999983 4777776654332 234566666666666654
Q ss_pred CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhcCCCCCHhHHH
Q 038522 430 GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA-RRGQLESAYNMIRQMNIKPTASLWS 507 (590)
Q Consensus 430 g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~ 507 (590)
.| -..||..++-.|++..-++.|..++.+-....-.-.+...|+ |++++. ..-..++|.+-+..+...-....-.
T Consensus 306 --nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRk 382 (459)
T KOG4340|consen 306 --NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRK 382 (459)
T ss_pred --CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44 567888899899999889988888755432100011233333 344443 3456777777665541000000011
Q ss_pred HHHHHHH-hcCC----chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 508 AILGACS-IYGN----TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 508 ~l~~~~~-~~~~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..+..-. +..+ ...+++-|++.+++.- ......++.|.+..++.-+.++|..-.+
T Consensus 383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1111111 1112 1234444555554431 2567778899999999999999987655
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.91 E-value=1.9e-06 Score=76.15 Aligned_cols=313 Identities=12% Similarity=0.070 Sum_probs=176.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH---HHhccCCChhHHHHHHHHHHHhCCCCChhHHH-HHHH
Q 038522 200 WNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSIL---RASVGGIELMKISQIHDLIIKLGLESSNKLTG-SLID 275 (590)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~ 275 (590)
.--+-..+...|++..|+.-|...++. |+..|.++. ..|...|+...|..=+...++. +||-..-. .-..
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 444566677777888888877777643 333444433 3455666666666666665543 44432211 1123
Q ss_pred HHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHH
Q 038522 276 VYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQ 355 (590)
Q Consensus 276 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 355 (590)
.+.+.|.++.|..-|+.+.+.++.. +. ..++.+-+....+ .......+..+...|+...++.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~-----------~~-~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSN-----------GL-VLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCc-----------ch-hHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHH
Confidence 4566777777777777665433210 00 1111111111000 0112223334445566677777
Q ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 038522 356 IHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV 432 (590)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 432 (590)
....+.+.. +.+...+..-..+|...|++..|+.=+.... ..+..++--+-..+...|+.+.++...++..+ +.
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 766666643 3567777777778888888888876555443 34555666666677777888888877777776 46
Q ss_pred CcHHH----HHHH---------HHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHH
Q 038522 433 PNDVT----FLSL---------LFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLESAYNMI 494 (590)
Q Consensus 433 p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 494 (590)
||... |..+ +......++|.++.+..+...+. .|. ...+..+-.++...|++-+|++..
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 65432 1111 11223445666666666666543 333 122334445555667777777777
Q ss_pred Hhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 495 RQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 495 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
.+. .+.|| ..++..-..+|.-..+++.|+.-|+++.+.+|+|..+-..
T Consensus 331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG 380 (504)
T KOG0624|consen 331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG 380 (504)
T ss_pred HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 666 55554 5566666666766777777777777777777766554443
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=1.6e-07 Score=84.52 Aligned_cols=180 Identities=16% Similarity=0.103 Sum_probs=113.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-c---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH----HH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN-V---ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND----VT 437 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~ 437 (590)
....+..+...+.+.|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 445556666667777777777777776653 22 1 24555666777777777777777777664 3321 13
Q ss_pred HHHHHHHhhcc--------CChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHH
Q 038522 438 FLSLLFACSHT--------GLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA 508 (590)
Q Consensus 438 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 508 (590)
+..+..++... |++++|.+.++.+.+. .|+. .....+.... ...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence 44444444433 5666777777777654 3332 1221111110 000000 001124
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
+...+...|+++.|+..++++++..|++ +.++..++.+|...|++++|..+++.+..+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5566889999999999999999887754 4689999999999999999999999887654
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.87 E-value=7.8e-06 Score=78.98 Aligned_cols=197 Identities=10% Similarity=-0.040 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCcH--HHHHHHHH
Q 038522 370 AVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VPND--VTFLSLLF 443 (590)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~ 443 (590)
.....+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+..
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3444566677888889999888888763 3455677788888889999999999888776421 1222 34556777
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-Hhc-CCCCC---HhHHHHHHHHH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHF-S--CVVDLFARRGQLESAYNM--I-RQM-NIKPT---ASLWSAILGAC 513 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~ 513 (590)
.+...|++++|...+++........+..... + .++..+...|....+.++ + ... ...|. .........++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 8888899999999998876331111222111 1 223333444543333332 2 111 11111 12223455667
Q ss_pred HhcCCchHHHHHHHHHhcCCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 514 SIYGNTSLGELAARNLFDMEP---------EKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
...|+.+.|...++.+....- .........+.++...|++++|.+.+......
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999988864221 12444566778889999999999999988764
No 102
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.87 E-value=3.5e-05 Score=77.94 Aligned_cols=345 Identities=12% Similarity=0.045 Sum_probs=168.1
Q ss_pred HHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HhccCchhh
Q 038522 75 YAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRA--CARMRWLQG 149 (590)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~ 149 (590)
|.+.++...|+.-|+...+ .|...|..+..+|.+.|++..|+++|.+... +.|+.. |.....+ .+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHH
Confidence 3344444444444444333 2566788899999999999999999988876 445433 3222222 356788888
Q ss_pred HHHHHHHHHhcC------CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-----------CCcchHHHHHHHHHhcCC
Q 038522 150 GRMIQGSIQKGR------FVENLFVKSALLDLYAKCGWIEDAWILFERIER-----------KDVVSWNAMIGGLAMQGF 212 (590)
Q Consensus 150 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~ 212 (590)
+...++.....- ..--..++-.+...+...|=..+|..++++-.+ .+...|-.+-++|.-.-.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 888887776531 011112222222222222322233333322111 122223222222111000
Q ss_pred --ch----HHHHHH-HHHHHcCCCC--------------------ChhhHHHHHHHhc-------cCC-ChhHHHHHHHH
Q 038522 213 --ND----DSFWLF-RSMMRQGMKP--------------------DCFTLGSILRASV-------GGI-ELMKISQIHDL 257 (590)
Q Consensus 213 --~~----~a~~~~-~~m~~~~~~p--------------------~~~~~~~ll~~~~-------~~~-~~~~a~~~~~~ 257 (590)
++ ....+| .+....+.-| +..++..+...+. ..+ +...|...+..
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 00 001111 1121112111 1222222222211 112 22245555555
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH
Q 038522 258 IIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM---LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD 334 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 334 (590)
.++.. ..+..+|+.|.-. ...|.+.-|...|-+- .+....+|..+...+.+..+ ++.|...|...+... +.+.
T Consensus 809 aV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d-~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 809 AVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD-FEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc-HHHhhHHHHhhhhcC-chhh
Confidence 55432 3344555555443 5556777777666554 23355677777777777777 888888888876442 2334
Q ss_pred HHHHHHHHHHhchhhhHhHHHHHHHHHH----hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC------------C
Q 038522 335 VILCLMLNICANVASLNLGRQIHAFAFK----YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD------------K 398 (590)
Q Consensus 335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~ 398 (590)
..+..........|+.-+...++..-.. .|--+...-+-+........|+.++-+..-+++.. |
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p 964 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP 964 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence 4444444444455666566666555221 22233444444444455566666655555555431 2
Q ss_pred -CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038522 399 -NVISWTSLIAGYAKHGYGHEAIELYKKM 426 (590)
Q Consensus 399 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m 426 (590)
....|.+.....-+.+.+..|.+...+.
T Consensus 965 ~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 965 QLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3345666666566666666666665554
No 103
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=8e-08 Score=82.66 Aligned_cols=127 Identities=11% Similarity=0.126 Sum_probs=96.0
Q ss_pred cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHH-HhcCC--chHH
Q 038522 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGAC-SIYGN--TSLG 522 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 522 (590)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55666777777776653 2445778888888888888888888888887 5455 556666666653 56666 5889
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCCceE
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSF 576 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 576 (590)
.++++++++.+|+++.++..++..+...|++++|+..++++.+.....++....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence 999999999999889999999999999999999999999888866554444433
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=6.8e-08 Score=93.60 Aligned_cols=210 Identities=15% Similarity=0.131 Sum_probs=142.6
Q ss_pred CCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522 364 QSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF 443 (590)
Q Consensus 364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 443 (590)
+.+|-...-..+.+.+.+.|-...|..+|+++ ..|.-.+.+|...|+..+|..+..+-.++ +|++.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34555555566777788888888888888775 35666777788888888888887777763 677888888777
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSL 521 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 521 (590)
..-...-+++|.++.+....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+.-+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777777777665432 1112222234467777777777654 3333 45667766666677777777
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc-CCCceEEeecCccccccc
Q 038522 522 GELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK-NPGYSFLQSSKKNILLLE 588 (590)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 588 (590)
|.+.|...+.++|++...|+++..+|.+.|+..+|...+++..+-+.++ ..+..+..++-|+++|.|
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence 7777777777777777777777777777777777777777777755333 345555566666666654
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.85 E-value=3.2e-05 Score=68.67 Aligned_cols=357 Identities=11% Similarity=0.084 Sum_probs=211.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHH---HHHHhcCCchHHHHHHHHHHHcCCCCChhhHH-HHHHH
Q 038522 166 LFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMI---GGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG-SILRA 241 (590)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~ 241 (590)
+.-..-+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+....+. +||-..-. .-...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 333445667777888889999998888887777777765 4678888888888888887764 77754332 12234
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHH
Q 038522 242 SVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDL 321 (590)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~ 321 (590)
+.+.|.++.|..=|+..++........ ..++.+.-..++-..+ ...+..+...|+ ...|+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e~~~l------------~~ql~s~~~~GD-~~~ai~~ 177 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQEHWVL------------VQQLKSASGSGD-CQNAIEM 177 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHHHHHH------------HHHHHHHhcCCc-hhhHHHH
Confidence 678899999999999888764211110 1111111111111111 111222333444 5555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc-
Q 038522 322 FKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV- 400 (590)
Q Consensus 322 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 400 (590)
...+++-. +.|...+..-..+|...|++..|+.-++.+-+.... +...+-.+...+...|+.+.++...++..+-|+
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 55555431 334444444445555555555555555544444333 333444455566677777777777777664322
Q ss_pred -c----hHHHH---------HHHHHhcCCchHHHHHHHHHHHcCCCCc--HH---HHHHHHHHhhccCChHHHHHHHHHH
Q 038522 401 -I----SWTSL---------IAGYAKHGYGHEAIELYKKMKHEGMVPN--DV---TFLSLLFACSHTGLTCEGWELFTDM 461 (590)
Q Consensus 401 -~----~~~~l---------~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~---~~~~ll~~~~~~~~~~~a~~~~~~~ 461 (590)
. .|-.+ +......++|.++++..+...+. .|. .. .+..+-.++...+++.+|++...++
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 1 12111 22345677888888888888775 443 22 3445556777889999999999999
Q ss_pred HhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522 462 INKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 462 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 539 (590)
. .+.|+ +.++..-..+|.-...++.|+.-|+.+ ...++... ..+.++-.+++.+... ....
T Consensus 334 L---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~-------------~reGle~Akrlkkqs~-kRDY 396 (504)
T KOG0624|consen 334 L---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR-------------AREGLERAKRLKKQSG-KRDY 396 (504)
T ss_pred H---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH-------------HHHHHHHHHHHHHHhc-cchH
Confidence 8 55676 888888889999999999999999988 44444321 1122222233332222 2334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 540 YVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
|-.|+ -.+.-...|..+.+.++-.
T Consensus 397 YKILG--VkRnAsKqEI~KAYRKlAq 420 (504)
T KOG0624|consen 397 YKILG--VKRNASKQEITKAYRKLAQ 420 (504)
T ss_pred HHHhh--hcccccHHHHHHHHHHHHH
Confidence 44443 2344555677777777654
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.82 E-value=1.2e-07 Score=77.13 Aligned_cols=92 Identities=10% Similarity=-0.044 Sum_probs=52.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038522 476 CVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW 553 (590)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 553 (590)
.+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++|+++.++..++.++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 3445555556666666655555 3333 4445555555556666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhhhcC
Q 038522 554 DNARKTRKLMEERS 567 (590)
Q Consensus 554 ~~A~~~~~~~~~~~ 567 (590)
++|++.++...+..
T Consensus 109 ~eAi~~~~~Al~~~ 122 (144)
T PRK15359 109 GLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666555533
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=0.00022 Score=70.93 Aligned_cols=140 Identities=13% Similarity=0.133 Sum_probs=85.1
Q ss_pred ccccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHh--------cCCCchhHHHHHHHHHH
Q 038522 5 RANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITN--------GYESNLHLSTKVIIFYA 76 (590)
Q Consensus 5 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~ 76 (590)
+-|..-|+.+.|.+..+.+ .+...|..+.+.|.+..+++-|.-++-.|... ..+.+..+-....-...
T Consensus 736 SfyvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi 811 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI 811 (1416)
T ss_pred eEEEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence 4566778888887766654 34456888888888888877777666665421 11112133333333445
Q ss_pred hcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522 77 KVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGS 156 (590)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 156 (590)
..|.+++|+.++++-+. |..|=..|-..|.+++|+++-+.--+ +.. ..||..-..-+...+|.+.|.+.|+.
T Consensus 812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iHL-r~Tyy~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IHL-RNTYYNYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--eeh-hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence 67788888887776543 44455666677888888777665322 222 23444445555566777777776654
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.74 E-value=2.4e-07 Score=79.10 Aligned_cols=152 Identities=12% Similarity=0.064 Sum_probs=72.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG 485 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (590)
+-..+...|+-+....+....... ..-|......++....+.|++.+|...+.+... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 334444444444444444443321 111233333344445555555555555555543 23344555555555555555
Q ss_pred ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522 486 QLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 486 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
+.++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....|.+..+-..|+.+...+|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 555555555444 2222 23334455555555555555555555555555545555555555555555555555443
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.73 E-value=1.2e-06 Score=89.48 Aligned_cols=131 Identities=16% Similarity=0.109 Sum_probs=91.3
Q ss_pred CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHH
Q 038522 432 VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSA 508 (590)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 508 (590)
..+...+..|.....+.|.+++|..+++.+.+ +.|+ ......++..+.+.+++++|+..+++. ...|+ ......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 34566667777777777777777777777773 3565 445556667777777777777777776 44453 344556
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+..++.+.|++++|...|++++..+|+++.++..++.++...|+.++|...|++..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666667777777777777777777777777777777777777777777777777655
No 110
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=2.3e-05 Score=75.77 Aligned_cols=152 Identities=11% Similarity=-0.013 Sum_probs=69.7
Q ss_pred HhhcccchhHHHHHHHHHHHhcCCCchhHHHH---HHHHHHhcCChHHHHHHhccCCCCCc---cchHHHHHHHHhcCCh
Q 038522 39 FCIDKKAERQAHLIHAHIITNGYESNLHLSTK---VIIFYAKVGDVLSARKAFDRMPERNV---VSWTAMISGYAQNGYD 112 (590)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~ 112 (590)
.+...|++++|.+.++...+.. +.+...+.. ........+..+.+.+.++.....+. .....+...+...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 3445566666666666666553 223333321 11111123344444444443222111 1222333455556666
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCC-CCch--HHHHHHHHHHHhcCChHHHHHHH
Q 038522 113 ENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRF-VENL--FVKSALLDLYAKCGWIEDAWILF 189 (590)
Q Consensus 113 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~ 189 (590)
++|.+.+++..+.. +.+...+..+...+...|++++|...++...+... .|+. ..|..+...+...|++++|..++
T Consensus 131 ~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 131 DRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666665532 22233444444555555666666666555554321 1111 22334555555555555555555
Q ss_pred hcc
Q 038522 190 ERI 192 (590)
Q Consensus 190 ~~~ 192 (590)
++.
T Consensus 210 ~~~ 212 (355)
T cd05804 210 DTH 212 (355)
T ss_pred HHH
Confidence 554
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=2e-06 Score=89.49 Aligned_cols=199 Identities=15% Similarity=0.167 Sum_probs=143.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCCC--------CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGDK--------NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL 439 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 439 (590)
+...|-..|......++.++|++++++.... -...|.+++......|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3455566677777778888888888776531 2236777777777777777778888887763 22344567
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC---HhHHHHHHHHHHh
Q 038522 440 SLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT---ASLWSAILGACSI 515 (590)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~ 515 (590)
.|...|.+.+.+++|.++++.|.++++ .....|..+++.+.+..+-++|..++.++ ..-|. .....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 777788888888888888888888755 45667788888888888888888888776 33343 3334444455567
Q ss_pred cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522 516 YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK 570 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (590)
.|+.+.+..+|+-.+.-.|.....|..++..-.++|+.+.++.+|+.+...++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7888888888888888888888888888888888888888888888877766543
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.67 E-value=4.6e-07 Score=73.69 Aligned_cols=123 Identities=11% Similarity=0.051 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522 420 IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM- 497 (590)
Q Consensus 420 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 497 (590)
..++++..+ +.|+. +..+...+...|++++|...|+.... ..| +...+..+..++.+.|++++|...|++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666665 35553 44567778899999999999999985 344 5788889999999999999999999998
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 498 NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 498 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
...| ++..+..+..++...|++++|+..++++++..|+++..+...+.+...
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4445 677888999999999999999999999999999999999888776543
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.62 E-value=0.00039 Score=76.54 Aligned_cols=259 Identities=8% Similarity=-0.000 Sum_probs=146.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCh----hhHHHHHHHhccCCChhHHHHHHHHHHHhCC---CC--ChhHHHHHHH
Q 038522 205 GGLAMQGFNDDSFWLFRSMMRQGMKPDC----FTLGSILRASVGGIELMKISQIHDLIIKLGL---ES--SNKLTGSLID 275 (590)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 275 (590)
..+...|++++|...+++....-...+. ...+.+...+...|+++.|...+.......- .+ .......+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3445677777777777666542111111 2234444455667777777777766654211 11 1234445566
Q ss_pred HHHhcCChHHHHHHHHhccC-------CC----ccchHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCC--HHHHHHH
Q 038522 276 VYAKYGSIRSAYQLYRSMLK-------TD----IISCTALISGFARDDNHSKEAFDLFKDMILKK--MGID--DVILCLM 340 (590)
Q Consensus 276 ~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l 340 (590)
.+...|+++.|...+++... ++ ...+..+...+...|+ +++|...+.+..... ..+. ...+..+
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR-LDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 67777777777777666521 01 1112233344555677 778877777665421 1121 2223334
Q ss_pred HHHHhchhhhHhHHHHHHHHHHhCCCcc-hh-----HHHHHHHHHHhcCChHHHHHHHHhcCCCCcc-------hHHHHH
Q 038522 341 LNICANVASLNLGRQIHAFAFKYQSSYD-AA-----VGNALIDMYAKSGEIADANRAFDEMGDKNVI-------SWTSLI 407 (590)
Q Consensus 341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~ 407 (590)
.......|+.+.|...+........... .. .....+..+...|+.+.|..++.....+... .+..+.
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a 698 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA 698 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence 4455667788888777776644211110 00 0011224445678888888888776643211 134566
Q ss_pred HHHHhcCCchHHHHHHHHHHHc----CCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522 408 AGYAKHGYGHEAIELYKKMKHE----GMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINK 464 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (590)
.++...|++++|...+++.... |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6778888999998888887653 22222 235556667778889999999988888764
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=1.8e-05 Score=73.92 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=75.6
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCC
Q 038522 409 GYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQ 486 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 486 (590)
.+...|++++|+..++.+... .| |+.......+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence 344455666666666665553 34 3333444445555666666666666666632 444 3334445556666666
Q ss_pred hHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 487 LESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 487 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
+.+|..++++. ..+.|+..|..|..+|...|+..++.. ..+..|+-.|++++|+..+...+
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHH
Confidence 66666666655 334455566666666666665544432 23444555666666666666665
Q ss_pred hc
Q 038522 565 ER 566 (590)
Q Consensus 565 ~~ 566 (590)
++
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 53
No 115
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.7e-08 Score=55.24 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=23.1
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHhccC
Q 038522 161 RFVENLFVKSALLDLYAKCGWIEDAWILFERIE 193 (590)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 193 (590)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777776663
No 116
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.59 E-value=9.2e-07 Score=71.73 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344555666677777777777777776 3233 55667777777777788888888888888888877888888888888
Q ss_pred hcCChHHHHHHHHHhhhcC
Q 038522 549 AAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~ 567 (590)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 8888888888887776654
No 117
>PF12854 PPR_1: PPR repeat
Probab=98.57 E-value=7.8e-08 Score=55.21 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=26.0
Q ss_pred cCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 038522 60 GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMP 92 (590)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 92 (590)
|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 118
>PLN02789 farnesyltranstransferase
Probab=98.56 E-value=5.3e-05 Score=70.29 Aligned_cols=185 Identities=11% Similarity=0.078 Sum_probs=128.8
Q ss_pred HHHHHhcC-ChHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCc--hHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhcc
Q 038522 376 IDMYAKSG-EIADANRAFDEMGDK---NVISWTSLIAGYAKHGYG--HEAIELYKKMKHEGMVP-NDVTFLSLLFACSHT 448 (590)
Q Consensus 376 ~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 448 (590)
..++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++.+++++.+. .| |...|.....++...
T Consensus 78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l 155 (320)
T PLN02789 78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTL 155 (320)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence 33444445 567888888776642 334566554445555553 6778888888875 45 678888888888888
Q ss_pred CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc---
Q 038522 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR---GQL----ESAYNMIRQM-NIKP-TASLWSAILGACSIY--- 516 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--- 516 (590)
|+++++++.++++.+. . .-+...|+....++.+. |.. ++++++..++ ...| |...|+-+...+...
T Consensus 156 ~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~ 233 (320)
T PLN02789 156 GGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEA 233 (320)
T ss_pred hhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcc
Confidence 9999999999999875 2 23455666655555443 222 4567777555 4445 567788888777663
Q ss_pred -CCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC------------------ChHHHHHHHHHhh
Q 038522 517 -GNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG------------------AWDNARKTRKLME 564 (590)
Q Consensus 517 -~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 564 (590)
++..+|.....++.+.+|.++.++..|+.+|.... ..++|.++++.+.
T Consensus 234 l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 234 LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 45577999999999999999999999999998643 3467888888873
No 119
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=2.6e-06 Score=67.83 Aligned_cols=97 Identities=9% Similarity=0.019 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
....-.+...+...|++++|..+|+-. ...| +...|-.|...|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344555666778999999999999988 5555 55678899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhcC
Q 038522 549 AAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~ 567 (590)
..|+.+.|++.|+......
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887744
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=4.9e-06 Score=74.94 Aligned_cols=183 Identities=16% Similarity=0.042 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC-c-chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-cc---h
Q 038522 331 GIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS-Y-DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN-VI---S 402 (590)
Q Consensus 331 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~ 402 (590)
......+......+...|+++.|...++.+....+. | ....+..+..++.+.|++++|...++++.+ |+ .. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 334566777788889999999999999999886543 2 234667788999999999999999999874 32 22 3
Q ss_pred HHHHHHHHHhc--------CCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhH
Q 038522 403 WTSLIAGYAKH--------GYGHEAIELYKKMKHEGMVPNDV-TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEH 473 (590)
Q Consensus 403 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 473 (590)
+..+..++... |++++|.+.++++.+. .|+.. .+..+..... . ..... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HH
Confidence 55555666554 6789999999999875 56432 3222211100 0 00000 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-CCCC----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM-NIKP----TASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
...+...|.+.|++++|+..+++. ...| ....+..+..++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124566788899999999998887 2222 346788888899999999999998888877666
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=2.7e-06 Score=80.24 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=103.6
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHH
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACS 514 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 514 (590)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+. ..+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445666777788999999999999965 355 3445788888889999999999888 33346666676777788
Q ss_pred hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 515 IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
..++++.|+.+.+++.+..|.+-.+|..|+.+|...|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999875
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=1.3e-05 Score=69.08 Aligned_cols=155 Identities=8% Similarity=0.075 Sum_probs=118.4
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHH
Q 038522 375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEG 454 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 454 (590)
-+..|...|+++.+....+.+..|. . .+...++.+++...+++..+.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456788888888766654443321 1 1112566788888888877752 44788899999999999999999
Q ss_pred HHHHHHHHhhcCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522 455 WELFTDMINKYRILP-RAEHFSCVVDLF-ARRGQ--LESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARN 528 (590)
Q Consensus 455 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 528 (590)
...|++..+. .| +...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..|++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999854 45 577788888864 67777 59999999998 5555 567788888999999999999999999
Q ss_pred HhcCCCCCcchHH
Q 038522 529 LFDMEPEKSVNYV 541 (590)
Q Consensus 529 ~~~~~p~~~~~~~ 541 (590)
+++..|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999986654443
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=6.8e-06 Score=80.21 Aligned_cols=211 Identities=10% Similarity=0.014 Sum_probs=168.4
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCC
Q 038522 338 CLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG--DKNVISWTSLIAGYAKHGY 415 (590)
Q Consensus 338 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 415 (590)
..+...+.+.|-...|..+++.. ..+..++.+|...|+..+|..+..+.. +|++..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 34556667778888888888754 455678889999999999998877655 4778888888888777777
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522 416 GHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIR 495 (590)
Q Consensus 416 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (590)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.+- .+.-..+|-.+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 88888888765432 1112222234578999999999887753 12346788888888899999999999999
Q ss_pred hc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 496 QM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 496 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
.. ...|| ...|+.+..+|.+.++-.+|...++++++-+-++..+|.+...+....|.|++|.+.++.+.+.
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88 55664 5789999999999999999999999999988888999999999999999999999999998773
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.52 E-value=3.1e-05 Score=80.17 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 447 (590)
.+..+..+|-+.|+.++|..+|+++.+ .|+...|.+...|... +.++|.+++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 445555666666666666666666553 2444555555555555 666666666655542 344
Q ss_pred cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHH
Q 038522 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAAR 527 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 527 (590)
.+.+..+.++|.++... .+-+...+..+.+.....- +..--..++.-+..-|...++++++..+++
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR------------EFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 44556666666666542 1112223222222221111 111222344445556667778888888888
Q ss_pred HHhcCCCCCcchHHHHHHHHH
Q 038522 528 NLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 528 ~~~~~~p~~~~~~~~l~~~~~ 548 (590)
.+++.+|.|..+...++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 888888888888888888777
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.00013 Score=62.77 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=77.7
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc----cCC
Q 038522 375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH----TGL 450 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~ 450 (590)
-...|+..|++++|.+...... +....-.=+..+.+..+.+-|.+.+++|.+ -.+..|.+-|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchh
Confidence 3445566666666666665522 222222223334455556666666666664 2344455544444432 234
Q ss_pred hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCc-hHHHHHHH
Q 038522 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNT-SLGELAAR 527 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~ 527 (590)
+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++. ....++.+...++-.....|.. +...+.+.
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 55566666666542 3555555555555556666666666666555 2233444444444333344433 33444555
Q ss_pred HHhcCCCCC
Q 038522 528 NLFDMEPEK 536 (590)
Q Consensus 528 ~~~~~~p~~ 536 (590)
++....|.+
T Consensus 267 QLk~~~p~h 275 (299)
T KOG3081|consen 267 QLKLSHPEH 275 (299)
T ss_pred HHHhcCCcc
Confidence 555555533
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=2.8e-05 Score=66.72 Aligned_cols=152 Identities=13% Similarity=0.054 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG 449 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 449 (590)
..+-..+...|+-+....+...... .+.......+....+.|++..|...+++.... -++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 3344444455555555555554331 23334444566666666666666666666553 2445666666666666666
Q ss_pred ChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHH
Q 038522 450 LTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAA 526 (590)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 526 (590)
+.+.|..-|.+..+- .| +...++.+.-.|.-.|+.+.|..++... -.++ |...-..+..+....|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666666666543 22 2445555666666666666666666665 1122 4444455555555666666666554
Q ss_pred HH
Q 038522 527 RN 528 (590)
Q Consensus 527 ~~ 528 (590)
.+
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 43
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=5.2e-05 Score=79.47 Aligned_cols=227 Identities=13% Similarity=0.128 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHhchhhhHhHHHHHHHHHHh-CCCc---chhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C-cchHHHH
Q 038522 333 DDVILCLMLNICANVASLNLGRQIHAFAFKY-QSSY---DAAVGNALIDMYAKSGEIADANRAFDEMGDK-N-VISWTSL 406 (590)
Q Consensus 333 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l 406 (590)
++..|...|.-....++.+.|+.+.+++... ++.- -..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456777777788888888888888877653 2221 1345666666666678888889999998863 3 3578889
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
...|.+.+.+++|-++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+...-.-........+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999986 55667888899999999999999999999998752112235566667777789999
Q ss_pred hHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC--CCCcchHHH-HHHHHHhcCChHHHHHHH
Q 038522 487 LESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDME--PEKSVNYVV-LSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 487 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~-l~~~~~~~g~~~~A~~~~ 560 (590)
.+++..+|+.. ..+-....|+.++..-.++|+.+.++.+|++++.+. |.....++- +...-...|+-+.+..+=
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 99999999988 434466789999999999999999999999999654 555554443 343333446655544443
No 128
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=1.7e-05 Score=73.60 Aligned_cols=191 Identities=10% Similarity=0.053 Sum_probs=139.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcC-CchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccC
Q 038522 375 LIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHG-YGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTG 449 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 449 (590)
+-..+...++.++|+...+++.+.++ .+|+.....+...| ++++++..++++.+. .| +..+|......+.+.|
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence 33445556788899999888875333 45655556666667 579999999999985 44 5556666555555666
Q ss_pred Ch--HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc---CCc---
Q 038522 450 LT--CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIY---GNT--- 519 (590)
Q Consensus 450 ~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~--- 519 (590)
.. +++..+++.+.+. -+-+...|.....++...|+++++++.+.++ ...| |...|+......... |..
T Consensus 121 ~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 121 PDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred chhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 53 6788899888854 2335788888888889999999999999998 4334 567777766665443 223
Q ss_pred -hHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----CChHHHHHHHHHhhhcCCc
Q 038522 520 -SLGELAARNLFDMEPEKSVNYVVLSNIYTAA----GAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 520 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~ 569 (590)
+..+....+++..+|+|..+|..+..++... ++..+|.+...+..+.+++
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 4688888899999999999999999999883 4567788888876665443
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=3.1e-05 Score=65.83 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=86.8
Q ss_pred hhhHhHHHHHHHHHH---hC-CCcch-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHH---HHHHHHhcCCchHH
Q 038522 348 ASLNLGRQIHAFAFK---YQ-SSYDA-AVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTS---LIAGYAKHGYGHEA 419 (590)
Q Consensus 348 ~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a 419 (590)
.+.++..+++..+.. .| ..++. .+|..++-+....|+.+.|...++.+.+.-+.++.. -..-+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 344555555555433 12 22222 223344444445555555555555544211111111 01122334555555
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-C
Q 038522 420 IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-N 498 (590)
Q Consensus 420 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 498 (590)
+++++...+.. +-|..++..=+...-..|..-+|++-+....+. +..|...|..+.+.|...|++++|.--++++ -
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 55555555542 224444444444444445555555555555542 3445555555555555555555555555555 2
Q ss_pred CCC-CHhHHHHHHHHHHhcC---CchHHHHHHHHHhcCCCCCcchHH
Q 038522 499 IKP-TASLWSAILGACSIYG---NTSLGELAARNLFDMEPEKSVNYV 541 (590)
Q Consensus 499 ~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~ 541 (590)
+.| ++..+..+...+.-.| +.+.+.+.|.+++++.|.+...+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 223 3333344443333222 444555555555555554433333
No 130
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=5.4e-05 Score=72.17 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=45.6
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCC---CccchHHHHHHHHhcCCChHHHH
Q 038522 243 VGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT---DIISCTALISGFARDDNHSKEAF 319 (590)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~a~ 319 (590)
.+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+- |......|...|...+. -..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~-q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL-QNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-HHHHH
Confidence 35555666666666665554 444556666666666666666666666655332 22344444455555555 55566
Q ss_pred HHHHHHHH
Q 038522 320 DLFKDMIL 327 (590)
Q Consensus 320 ~~~~~~~~ 327 (590)
..|+..+.
T Consensus 374 ~~L~~Wi~ 381 (579)
T KOG1125|consen 374 KMLDKWIR 381 (579)
T ss_pred HHHHHHHH
Confidence 66655543
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=7.1e-05 Score=70.10 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=80.8
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSL 521 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~ 521 (590)
.+...|.+++|+..++.+... .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 344556777777777777653 2334555556666777777777777777776 55555 4455666677777777777
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 522 GELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
|+.+++.....+|+++..|..|+.+|..+|+..+|....-+...
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766665544
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.39 E-value=0.0036 Score=63.37 Aligned_cols=217 Identities=11% Similarity=0.055 Sum_probs=137.0
Q ss_pred cccCChHHHHHHhhhCCCCCCCcccHHHHHH--HhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHH
Q 038522 8 FKTGQLKQALKFSLSCPDTLLDPSTYMSLLQ--FCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR 85 (590)
Q Consensus 8 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 85 (590)
...+++.+|+....++..-.|+.. |..++. .+.+.|..++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 356788899988888833344443 333444 456889999999999888766533 8888999999999999999999
Q ss_pred HHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC----------chhhHHHH
Q 038522 86 KAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMR----------WLQGGRMI 153 (590)
Q Consensus 86 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~~~ 153 (590)
.++++... |+..-...+..+|.|.+++.+-.+.--+|-+. ++-+...|=+++....+.. -..-|...
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 99999877 66555555666778877776544443333332 3334444444444433221 12334555
Q ss_pred HHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHhc-cC----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 038522 154 QGSIQKGR-FVENLFVKSALLDLYAKCGWIEDAWILFER-IE----RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQG 227 (590)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 227 (590)
.+.+.+.+ .--+..-...-...+...|++++|++++.. .. .-+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 56665543 111222222334455677889999988832 22 2233334455677778888888888888888775
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.37 E-value=0.0026 Score=60.62 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=56.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038522 62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--R-NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL 138 (590)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 138 (590)
+.|..+|..||.-+..+ .++++.+.++++.. | ....|..-|..-.+..+++....+|.+-+..-. +...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 66888899888876655 88888888888876 3 455788888888888899999888888876543 455555444
Q ss_pred HH
Q 038522 139 RA 140 (590)
Q Consensus 139 ~~ 140 (590)
.-
T Consensus 94 ~Y 95 (656)
T KOG1914|consen 94 SY 95 (656)
T ss_pred HH
Confidence 43
No 134
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00015 Score=62.31 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=113.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-Cc
Q 038522 322 FKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK-NV 400 (590)
Q Consensus 322 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 400 (590)
.+.+.......+......-...|...++.+.|.+..+... +......=+..+.+..+++-|.+.++.|.+- +-
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided 169 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED 169 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence 3334433333443444444556777778888777765521 2222233345567778899999999999874 44
Q ss_pred chHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHH
Q 038522 401 ISWTSLIAGYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSC 476 (590)
Q Consensus 401 ~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 476 (590)
.+.+.|..++.+ .+...+|.-+|++|.++ ..|++.+.+....++...|++++|..+++....+. ..++.+...
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~N 246 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHH
Confidence 566666666654 34688999999999875 68999999999999999999999999999999762 335666666
Q ss_pred HHHHHHhcCChHHH-HHHHHhc
Q 038522 477 VVDLFARRGQLESA-YNMIRQM 497 (590)
Q Consensus 477 l~~~~~~~g~~~~A-~~~~~~~ 497 (590)
++-.-...|...++ .+.+...
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHH
Confidence 66666666766554 4444554
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0031 Score=60.12 Aligned_cols=450 Identities=12% Similarity=0.124 Sum_probs=241.9
Q ss_pred CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHH
Q 038522 24 PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTA 101 (590)
Q Consensus 24 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ 101 (590)
...|.|..+|+.|++-+..+ -.+++...++++... ++.++..|..-|..-.+..+++..+++|.+-.. -+...|..
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 56788999999999988776 899999999999876 567888999999999999999999999988443 56777777
Q ss_pred HHHHHHhc-CChHH----HHHHHHHHH-HcCCCCCH-hhHHHHHHH---------HhccCchhhHHHHHHHHHhcCCCCc
Q 038522 102 MISGYAQN-GYDEN----ALLVFSAML-RSGVRANQ-FTYSSALRA---------CARMRWLQGGRMIQGSIQKGRFVEN 165 (590)
Q Consensus 102 li~~~~~~-~~~~~----a~~~~~~m~-~~~~~p~~-~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~~ 165 (590)
-|+.-.+. |+... ..+.|+-.. +-|+.+-. ..|+.-+.- +....+++..+.+++.+....+.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~-- 169 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH-- 169 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc--
Confidence 76644332 33322 222333322 22332221 122222221 11222333444444444332111
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHH--cCCCCChhh--------
Q 038522 166 LFVKSALLDLYAKCGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR--QGMKPDCFT-------- 234 (590)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~-------- 234 (590)
++++-++=|....+ -|..+-.-++ --+...+..|.++++++.. .|+.-+..+
T Consensus 170 ---------------nlEkLW~DY~~fE~~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~ 232 (656)
T KOG1914|consen 170 ---------------NLEKLWKDYEAFEQEINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD 232 (656)
T ss_pred ---------------cHHHHHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence 11111111111000 0000000000 0112223344444444321 121111111
Q ss_pred -------HHHHHHHhccCCCh---------hHHHHHHHHH-HHhCCCCChhHHH-----HHHHHHHhcCCh-------HH
Q 038522 235 -------LGSILRASVGGIEL---------MKISQIHDLI-IKLGLESSNKLTG-----SLIDVYAKYGSI-------RS 285 (590)
Q Consensus 235 -------~~~ll~~~~~~~~~---------~~a~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~~~g~~-------~~ 285 (590)
+..+|.- .+.+-+ ....-++++. .-.+..|+..... ...+.+...|+. ++
T Consensus 233 e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e 311 (656)
T KOG1914|consen 233 EIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE 311 (656)
T ss_pred HHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence 1111110 010000 0011111111 1123333222110 111223333433 33
Q ss_pred HHHHHHhccCC----CccchHHHHHH---HHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHH
Q 038522 286 AYQLYRSMLKT----DIISCTALISG---FARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHA 358 (590)
Q Consensus 286 a~~~~~~~~~~----~~~~~~~l~~~---~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 358 (590)
+..+++..... +...|..+... -....+ .+.....+.++...-..--..+|...+....+..-+..|+.+|.
T Consensus 312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~-~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNK-EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch-hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 33344333221 11112111110 011112 45555666666554333334567778888888888899999999
Q ss_pred HHHHhCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc
Q 038522 359 FAFKYQSSY-DAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVI-SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN 434 (590)
Q Consensus 359 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 434 (590)
.+.+.+..+ ++.+++++++.||. ++..-|.++|+.-.+ +|.. --...+.-+...++-..+..+|++....++.|+
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 998877766 78888888887765 788889999987553 3443 345567777788888899999999988877764
Q ss_pred --HHHHHHHHHHhhccCChHHHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 435 --DVTFLSLLFACSHTGLTCEGWELFTDMINKYR--ILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 435 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
...|..++.--+.-|+...+.++-+++...+. ..+....-..+++.|.-.+.+..-..-++.+
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 46899999888899999999988888876543 3333344555667776666665554444444
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.31 E-value=2.8e-05 Score=63.63 Aligned_cols=124 Identities=16% Similarity=0.152 Sum_probs=78.2
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh----HHHHHHH
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS----LWSAILG 511 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~ 511 (590)
|..++..+ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|++. ....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 33344333 36677777777777776532211 1223334556677778888888888777 2224332 3344556
Q ss_pred HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522 512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
.+...|++++|+..++.. ...|..+..+..++.+|...|++++|+..|+..
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677788888888888663 333345667778888888888888888888754
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=2.2e-05 Score=63.57 Aligned_cols=115 Identities=10% Similarity=0.018 Sum_probs=88.6
Q ss_pred HHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC
Q 038522 422 LYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI 499 (590)
Q Consensus 422 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 499 (590)
.+++..+ ..| +......+...+...|++++|...++.+... .+.+...+..+...+...|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555554 355 3344566677788889999999999998864 2335778888888999999999999999887 33
Q ss_pred CC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522 500 KP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY 540 (590)
Q Consensus 500 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 540 (590)
.| +...+..+...+...|+++.|...++++++++|++....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 567777888888999999999999999999999665543
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.25 E-value=1.3e-05 Score=63.18 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHH
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSN 545 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 545 (590)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344455556666666666666655 22222 2344455566666666677777777666666543 345666666
Q ss_pred HHHhcCChHHHHHHHHHhhhcCC
Q 038522 546 IYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 546 ~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
++.+.|++++|.+.++++.+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCc
Confidence 66677777777777766666543
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=1.5e-06 Score=63.36 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHhc-CCCC---CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038522 484 RGQLESAYNMIRQM-NIKP---TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT 559 (590)
Q Consensus 484 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 559 (590)
.|++++|+.+++++ ...| +...+..+...+.+.|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777 2233 445556677888888888888888888 777776777777888999999999999988
Q ss_pred HHH
Q 038522 560 RKL 562 (590)
Q Consensus 560 ~~~ 562 (590)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00057 Score=58.46 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=130.4
Q ss_pred hHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHH
Q 038522 315 SKEAFDLFKDMIL---KK-MGIDDVI-LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADAN 389 (590)
Q Consensus 315 ~~~a~~~~~~~~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 389 (590)
+++.++++.++.. .| ..|+..+ |..+.-+....+..+.|...++.+...- +-+..+-..-...+-..|++++|+
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHH
Confidence 8888888888764 24 5566544 4566677778888888888888887765 334444444444456678899999
Q ss_pred HHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522 390 RAFDEMGDK---NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR 466 (590)
Q Consensus 390 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 466 (590)
++++.+.+. |.+++-.-+-..-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.--++++. -
T Consensus 107 e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l---l 182 (289)
T KOG3060|consen 107 EYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL---L 182 (289)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH---H
Confidence 999988854 3345555555666678888888888888775 67788899999999999999999988888888 3
Q ss_pred CCC-ChhHHHHHHHHHHhcC---ChHHHHHHHHhc-CCCC
Q 038522 467 ILP-RAEHFSCVVDLFARRG---QLESAYNMIRQM-NIKP 501 (590)
Q Consensus 467 ~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 501 (590)
+.| ++..+..+.+.+.-.| +.+-|.++|.+. .+.|
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 455 4556667777665444 566678888776 5455
No 141
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=1.4e-05 Score=60.08 Aligned_cols=94 Identities=15% Similarity=0.260 Sum_probs=77.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.+.++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667778889999999998887 4344 34667777888888899999999999999999988888999999999999
Q ss_pred ChHHHHHHHHHhhhcC
Q 038522 552 AWDNARKTRKLMEERS 567 (590)
Q Consensus 552 ~~~~A~~~~~~~~~~~ 567 (590)
++++|...++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998876543
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.22 E-value=3.7e-06 Score=57.77 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=53.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456778999999999999999999999999999999999999999999999999887654
No 143
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.22 E-value=2.6e-06 Score=59.37 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=60.6
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHhhhcC
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG-AWDNARKTRKLMEERS 567 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 567 (590)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46678889999999999999999999999999999999999999999999 7999999999887643
No 144
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=0.00035 Score=71.90 Aligned_cols=139 Identities=9% Similarity=0.057 Sum_probs=103.7
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHH
Q 038522 399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSC 476 (590)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 476 (590)
++..+-.|.....+.|++++|..+|+...+. .|+ ......+...+.+.+++++|...+++.... .|+ ......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 4667777778888888888888888888874 675 445666777788888888888888888853 454 566677
Q ss_pred HHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 477 VVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
+..++...|++++|..+|+++ ...| +..++..+..++...|+.++|...|+++++...+....|..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 777888888888888888887 2233 46777788888888888888888888888766544444443
No 145
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.011 Score=60.22 Aligned_cols=504 Identities=12% Similarity=0.024 Sum_probs=269.8
Q ss_pred hcccchhHHHHHHHHHHHhcCCCchhHHHHHHHH--HHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHH
Q 038522 41 IDKKAERQAHLIHAHIITNGYESNLHLSTKVIIF--YAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENA 115 (590)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 115 (590)
...+++..|.+-...+.+.. |+. .|...+.+ ..+.|+.++|..+++.... .|..|...+-.+|.+.++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35578888988888887764 332 23333333 5678999999999888754 4777899999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC----------hHHH
Q 038522 116 LLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGW----------IEDA 185 (590)
Q Consensus 116 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A 185 (590)
..+|++... .-|+......+..++.+.+++.+-.+.--++.+. ++-+.+.+=++++.+...-. ..-|
T Consensus 97 ~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999987 4588888889999999998887776666666553 44555555556665554321 1234
Q ss_pred HHHHhccCCCC--c---chHHHHHHHHHhcCCchHHHHHH-HHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHH
Q 038522 186 WILFERIERKD--V---VSWNAMIGGLAMQGFNDDSFWLF-RSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLII 259 (590)
Q Consensus 186 ~~~~~~~~~~~--~---~~~~~li~~~~~~~~~~~a~~~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 259 (590)
.+.++.+.+.+ . .-...-...+...|.+++|++++ ....+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 44555544332 1 11222234556688899999998 344443333344455566777788888888888888888
Q ss_pred HhCCCCChhHHHHHHHHH----------------HhcCChHHHHHHHHhccCC-CccchHHHHHHHH---hcCCChHHHH
Q 038522 260 KLGLESSNKLTGSLIDVY----------------AKYGSIRSAYQLYRSMLKT-DIISCTALISGFA---RDDNHSKEAF 319 (590)
Q Consensus 260 ~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~~a~ 319 (590)
..|... |...++.+ ...+..+...+..++.... ...+|-+-+.... .-|+ .+++.
T Consensus 254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd-~ee~~ 328 (932)
T KOG2053|consen 254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGD-SEEML 328 (932)
T ss_pred HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCC-hHHHH
Confidence 876332 32222221 1122333333333333222 2223333333332 2344 44443
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--chh---HHHHHHHHHHhcCC-----hHHHH
Q 038522 320 DLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--DAA---VGNALIDMYAKSGE-----IADAN 389 (590)
Q Consensus 320 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~---~~~~l~~~~~~~~~-----~~~A~ 389 (590)
..|-+-. |-.|- +..=+..+...=+.+.-..++.......... +.. .+.+.+..-.-.|. -+.-.
T Consensus 329 ~~y~~kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 329 SYYFKKF--GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHHHh--CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 3332211 21221 0000011100001111111111111100000 000 01111111111121 11111
Q ss_pred HHHHhc----CC---------CCcc---------hHHHHHHHHHhcCCch---HHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522 390 RAFDEM----GD---------KNVI---------SWTSLIAGYAKHGYGH---EAIELYKKMKHEGMVPNDVTFLSLLFA 444 (590)
Q Consensus 390 ~~~~~~----~~---------~~~~---------~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~ 444 (590)
.++.++ .+ |... +-+.|+..+.+.++.. +|+-+++.-... -+-|..+=..++..
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiri 482 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRI 482 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHH
Confidence 222111 11 1111 3456777888877655 345555554443 13366666678888
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCC-HhHHHHHHHHHHhcCCchH
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPT-ASLWSAILGACSIYGNTSL 521 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~~~~~~ 521 (590)
|.-.|-+..|.++|+.+--+ .+..|...|. +...+...|++.-+...+... .+ ..+ ..+-..+..|| +.|.+.+
T Consensus 483 Y~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySk 559 (932)
T KOG2053|consen 483 YSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSK 559 (932)
T ss_pred HHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhh
Confidence 88889999999999888766 5555543332 234455667777777776655 11 011 12223333343 6677776
Q ss_pred HHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 522 GELAARNLFDMEPE----KSVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 522 a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
..+...--.++.-. -...-+.........++.++-.+.+..|.
T Consensus 560 I~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 560 IPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 66554433333321 12223345666777788888777777665
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.19 E-value=9.3e-05 Score=60.50 Aligned_cols=125 Identities=12% Similarity=0.077 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc---HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN---DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCV 477 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 477 (590)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33344444 3677777877888887752 222 223334556677888888888888888875 32222 2234456
Q ss_pred HHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 478 VDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
...+...|++++|+..++.. +....+..+......+...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77788888888888888776 323344556677788888888888888888763
No 147
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.16 E-value=0.0033 Score=65.73 Aligned_cols=81 Identities=14% Similarity=0.104 Sum_probs=46.8
Q ss_pred HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038522 336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGY 415 (590)
Q Consensus 336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 415 (590)
.+..+..+|.+.|+.+++..+++.+.+.. +-++.+.|.+...|... ++++|.+++.+. +..+...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence 44455555555666666666666665555 23566666666666666 666666665553 223455556
Q ss_pred chHHHHHHHHHHHc
Q 038522 416 GHEAIELYKKMKHE 429 (590)
Q Consensus 416 ~~~a~~~~~~m~~~ 429 (590)
+.++.++|.++...
T Consensus 185 ~~~~~e~W~k~~~~ 198 (906)
T PRK14720 185 YVGIEEIWSKLVHY 198 (906)
T ss_pred chHHHHHHHHHHhc
Confidence 66666666666553
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=8.2e-05 Score=70.46 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC
Q 038522 370 AVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG 449 (590)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 449 (590)
.....|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+. .+-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 334556677777899999999999999877777788889998889999999999999875 2336666666777788999
Q ss_pred ChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 038522 450 LTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQMNIK 500 (590)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 500 (590)
+++.|+++.+++.+ ..|+ ..+|..|..+|...|++++|+-.+..++..
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999995 4665 669999999999999999999999988433
No 149
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=3.9e-06 Score=49.15 Aligned_cols=34 Identities=32% Similarity=0.644 Sum_probs=29.7
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038522 97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRAN 130 (590)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 130 (590)
.+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3788899999999999999999999988888887
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.13 E-value=4.5e-06 Score=48.47 Aligned_cols=33 Identities=27% Similarity=0.515 Sum_probs=27.6
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038522 97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRA 129 (590)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 129 (590)
.+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.09 E-value=5.9e-06 Score=48.38 Aligned_cols=33 Identities=33% Similarity=0.781 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 038522 199 SWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD 231 (590)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 231 (590)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.2e-05 Score=68.21 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=94.2
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHh---cCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 468 LPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSI---YGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
+-|...|..|...|...|+...|..-|.+. .+.| ++..+..+..++.. ..+..++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 446889999999999999999999999988 4434 55556666655432 236678999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCCccCCCceEEeec
Q 038522 543 LSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSS 580 (590)
Q Consensus 543 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 580 (590)
|+..+..+|++.+|...|+.|.+.....+|..+.++-+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 99999999999999999999999888888887766544
No 153
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.08 E-value=0.00049 Score=55.76 Aligned_cols=133 Identities=11% Similarity=0.071 Sum_probs=106.6
Q ss_pred CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC---CHhHH
Q 038522 431 MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP---TASLW 506 (590)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 506 (590)
..|+...-..|..+..+.|++.+|...|++.... -+..|......+.++....+++.+|...+++. ..+| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677777778888999999999999999998874 44557788888888899999999999999887 2223 34456
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
-.+.+.+...|.+++|+..++.++.-.| ++..-...+..+.++|+.++|..-+-.+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6777888899999999999999999888 777777788889999988887765555444
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.08 E-value=7.4e-05 Score=58.89 Aligned_cols=106 Identities=9% Similarity=0.140 Sum_probs=72.2
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHH
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAIL 510 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 510 (590)
++..+...+.+.|++++|.+.++.+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445556667777788888888877776421111 1345556777788888888888888776 33333 44567777
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
.++...|+.+.|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77788888888888888888888876655443
No 155
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=1.8e-05 Score=75.24 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=88.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYG 517 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 517 (590)
-...+...|++++|++.|+++.+. .| +...+..+..+|...|++++|+..++++ .+.| +...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345667889999999999999964 44 4677888888999999999999999998 5555 5667888888999999
Q ss_pred CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522 518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA 550 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 550 (590)
+++.|+..++++++++|.++.+...+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998888877776654443
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=1e-05 Score=46.91 Aligned_cols=33 Identities=30% Similarity=0.607 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522 401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP 433 (590)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 433 (590)
.+|++++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=6.9e-05 Score=63.40 Aligned_cols=96 Identities=10% Similarity=0.068 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI 546 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 546 (590)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|+++.|+..++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34556666677777777777777766 32232 34667777778888888888888888888888888888888888
Q ss_pred HHhcCC--------------hHHHHHHHHHhhhcC
Q 038522 547 YTAAGA--------------WDNARKTRKLMEERS 567 (590)
Q Consensus 547 ~~~~g~--------------~~~A~~~~~~~~~~~ 567 (590)
|...|+ +++|.+.+++..+.+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 888776 466666666665544
No 158
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=2.1e-05 Score=68.85 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=89.9
Q ss_pred HHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCc
Q 038522 443 FACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNT 519 (590)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~ 519 (590)
.-+.+.+++.+|+..|.+.+ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34678899999999999999 4566 4666777788999999999999998887 66674 46899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 038522 520 SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWD 554 (590)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 554 (590)
+.|++.|+++++++|++......|-.+--+.+..+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999877777766655555544
No 159
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.98 E-value=0.015 Score=54.42 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=67.0
Q ss_pred hHHHHHHHHhcCC---CCcchHHHHHH----HHHh---cCCchHHHHHHHHHHHcCCCC----cHHHHHHHHHH--hhcc
Q 038522 385 IADANRAFDEMGD---KNVISWTSLIA----GYAK---HGYGHEAIELYKKMKHEGMVP----NDVTFLSLLFA--CSHT 448 (590)
Q Consensus 385 ~~~A~~~~~~~~~---~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~--~~~~ 448 (590)
-++|.++++.+.+ -|..+-|.... .|.+ ...+..-+.+-+-..+.|+.| +...-+.+.++ +...
T Consensus 396 dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysq 475 (549)
T PF07079_consen 396 DEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQ 475 (549)
T ss_pred cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhc
Confidence 6677777776653 23333332211 1211 122333344444445667766 33334444433 3456
Q ss_pred CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHH
Q 038522 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA 508 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 508 (590)
|++.++.-.-.-+. .+.|++.+|.-+.-++....++++|..++.+++ |+...++.
T Consensus 476 gey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 476 GEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred ccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 77777766555555 457777777777777777778888888877763 45555543
No 160
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=8.7e-05 Score=62.58 Aligned_cols=93 Identities=10% Similarity=-0.068 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
...+..++..+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..+++++.+.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 455666777788889999999988887 33332 3478888889999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHh
Q 038522 546 IYT-------AAGAWDNARKTRKLM 563 (590)
Q Consensus 546 ~~~-------~~g~~~~A~~~~~~~ 563 (590)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666544
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.93 E-value=2.8e-05 Score=54.84 Aligned_cols=60 Identities=8% Similarity=0.030 Sum_probs=54.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
...|...++++.|.+.+++++.++|+++..+...+.+|...|++++|.+.++...+.++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999999999999999999999999999999999999886653
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=1.2e-05 Score=55.89 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=45.5
Q ss_pred HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++.+.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3678888899999999888888888888889999999999999988887776554
No 163
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.92 E-value=0.02 Score=53.70 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=74.6
Q ss_pred hhccCC-hHHHHHHHHHHHhhcCCCC-ChhHHHHHH----HHHHhc---CChH---HHHHHHHhcCCCC----CHhHHHH
Q 038522 445 CSHTGL-TCEGWELFTDMINKYRILP-RAEHFSCVV----DLFARR---GQLE---SAYNMIRQMNIKP----TASLWSA 508 (590)
Q Consensus 445 ~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~ 508 (590)
+-+.|. -++|+.+++.+.+- .| |...-+.+. ..|..+ ..+. .-...+++.|++| +...-|.
T Consensus 389 lW~~g~~dekalnLLk~il~f---t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF---TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 344454 67788888877742 33 333322221 122221 1111 2233344447666 3344566
Q ss_pred HHHH--HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 509 ILGA--CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 509 l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
|..| ...+|++.++.-.-.=+.+..| ++.+|..++-++....++++|.++++.+.
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 6654 3578999999877777779999 99999999999999999999999998753
No 164
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00014 Score=63.96 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=89.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhc
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARR 484 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 484 (590)
..-+.+.+++.+|+..|.+.++. .| |.+-|..-..+|.+.|.++.|++-.+..+ .+.|. ...|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence 34567889999999999999984 66 77888888999999999999999998888 45665 67999999999999
Q ss_pred CChHHHHHHHHhc-CCCCCHhHHHHHH-HHHHhcCCch
Q 038522 485 GQLESAYNMIRQM-NIKPTASLWSAIL-GACSIYGNTS 520 (590)
Q Consensus 485 g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~ 520 (590)
|++++|.+.|++. .+.|+..+|..=+ .+-.+.++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999998 8899888775444 3333444443
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.85 E-value=0.00068 Score=57.35 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVV 478 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 478 (590)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .| +...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence 455566666666777777777776665432221 245555666666667777777766666643 23 244445555
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522 479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 552 (590)
..+...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5555555554444322211 112677888999999999865 5555555554443
No 166
>PRK15331 chaperone protein SicA; Provisional
Probab=97.83 E-value=0.00044 Score=55.60 Aligned_cols=90 Identities=12% Similarity=0.051 Sum_probs=76.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038522 476 CVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW 553 (590)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 553 (590)
....-+...|++++|..+|+-+ -. .-+..-|..|...+...+++++|+..|..+.-++++||......+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 3344567889999999999887 22 235566788888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 038522 554 DNARKTRKLMEE 565 (590)
Q Consensus 554 ~~A~~~~~~~~~ 565 (590)
+.|+..|+...+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999998877
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00095 Score=61.27 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=113.4
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH--HhhccCChHHHHHHHHHHHhhcCCCCChhHHHH---------
Q 038522 408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF--ACSHTGLTCEGWELFTDMINKYRILPRAEHFSC--------- 476 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--------- 476 (590)
.++.-.|++++|...--...+. .++ ..+..+++ ++...++.+.+...|++.. ...|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 4556678888888877776653 221 12222333 3445677888888888877 44555332211
Q ss_pred ----HHHHHHhcCChHHHHHHHHhc-CCCCC-----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522 477 ----VVDLFARRGQLESAYNMIRQM-NIKPT-----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI 546 (590)
Q Consensus 477 ----l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 546 (590)
=..-..+.|++.+|.+.+.+. ++.|+ ...|.....+..+.|+.++|+.-.+.+++++|.-..+|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 123345779999999999988 55554 44555555667789999999999999999999888889999999
Q ss_pred HHhcCChHHHHHHHHHhhhcCCccCC
Q 038522 547 YTAAGAWDNARKTRKLMEERSLRKNP 572 (590)
Q Consensus 547 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (590)
+...++|++|++-+++..+..-.+.+
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccch
Confidence 99999999999999998775443333
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00038 Score=66.32 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=83.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHh
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFAR 483 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 483 (590)
....+...|++++|++.|++.++. .| +...|..+..++...|++++|+..++++.+. .| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 345667889999999999999985 45 6778888888999999999999999999854 45 47788889999999
Q ss_pred cCChHHHHHHHHhc-CCCCCHhHHHHHHH
Q 038522 484 RGQLESAYNMIRQM-NIKPTASLWSAILG 511 (590)
Q Consensus 484 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~ 511 (590)
.|++++|+..|+++ .+.|+.......+.
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999998 66676655544443
No 169
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00039 Score=51.42 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccC--------chhhHHHHHHHHHhcCCCCchHHHH
Q 038522 100 TAMISGYAQNGYDENALLVFSAMLRSGV-RANQFTYSSALRACARMR--------WLQGGRMIQGSIQKGRFVENLFVKS 170 (590)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 170 (590)
..-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. .+-....+|+.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 899999999999987653 3446678899999999999999999
Q ss_pred HHHHHHHh
Q 038522 171 ALLDLYAK 178 (590)
Q Consensus 171 ~l~~~~~~ 178 (590)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.76 E-value=7.4e-05 Score=51.19 Aligned_cols=61 Identities=11% Similarity=0.227 Sum_probs=47.1
Q ss_pred HHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 477 VVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
+...+...|++++|.+.|++. ...| +...+..+...+...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888888 4445 566778888888888999999999999988888664
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.75 E-value=0.0013 Score=65.59 Aligned_cols=139 Identities=10% Similarity=0.066 Sum_probs=84.2
Q ss_pred CCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhccC--------ChHHHHHHHHHHHh
Q 038522 398 KNVISWTSLIAGYAKH-----GYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSHTG--------LTCEGWELFTDMIN 463 (590)
Q Consensus 398 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~ 463 (590)
.|...|...+++.... ++...|..+|++..+. .|+. ..+..+..++.... +...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555666666554332 2356788888888874 6653 34444333332211 12233333333222
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522 464 KYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV 538 (590)
Q Consensus 464 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 538 (590)
......+...+..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 1112334556666666666678888888888887 66677777888888888888888888888888888886554
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=4.4e-05 Score=43.07 Aligned_cols=31 Identities=42% Similarity=0.701 Sum_probs=23.6
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038522 97 VSWTAMISGYAQNGYDENALLVFSAMLRSGV 127 (590)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 127 (590)
++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888877663
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.0004 Score=51.91 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=50.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN 518 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 518 (590)
+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 344444555555666555555532 1112244445555555666666666666554 2222 33455566666666666
Q ss_pred chHHHHHHHHHhcCCC
Q 038522 519 TSLGELAARNLFDMEP 534 (590)
Q Consensus 519 ~~~a~~~~~~~~~~~p 534 (590)
++.|...++++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 7777776666666655
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=0.0001 Score=53.62 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=39.9
Q ss_pred cCCchHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 038522 413 HGYGHEAIELYKKMKHEGM-VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESA 490 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 490 (590)
.|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+ ..| +......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 3556666666666665421 11333344455666666666666666655 21 122 223333445556666666666
Q ss_pred HHHHHh
Q 038522 491 YNMIRQ 496 (590)
Q Consensus 491 ~~~~~~ 496 (590)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666554
No 175
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.039 Score=51.31 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=54.9
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHH
Q 038522 375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEG 454 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 454 (590)
.+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++...+... +-++.-|..++.+|.+.|+..+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344444555666666665555555666666666666666666554443221 11234555555566666666665
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 455 WELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQ 496 (590)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (590)
..+..++. +..-+..|.++|++.+|.+.-.+
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 55554421 12334555566666555554433
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.0017 Score=64.79 Aligned_cols=136 Identities=14% Similarity=0.128 Sum_probs=99.6
Q ss_pred CCCCcHHHHHHHHHHhhc--c---CChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 038522 430 GMVPNDVTFLSLLFACSH--T---GLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARR--------GQLESAYNMIR 495 (590)
Q Consensus 430 g~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 495 (590)
+.+.|...|..++++... . +....|..+|++..+. .|+ ...+..+..++... ++.+.+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345678888888887543 2 2367899999999954 777 44555444444222 12344555555
Q ss_pred hc----CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 496 QM----NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 496 ~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
+. ..+.++..+..+...+...|++++|...+++++.++| +..+|..++.+|...|+.++|.+.+++....++.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 53 2334557787777777788999999999999999999 6889999999999999999999999998775543
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.67 E-value=3.3e-05 Score=44.26 Aligned_cols=33 Identities=21% Similarity=0.510 Sum_probs=31.0
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522 526 ARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK 558 (590)
Q Consensus 526 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 558 (590)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=6.5e-05 Score=42.33 Aligned_cols=31 Identities=39% Similarity=0.809 Sum_probs=22.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 038522 401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGM 431 (590)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 431 (590)
++|++++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.65 E-value=0.00069 Score=64.59 Aligned_cols=119 Identities=8% Similarity=0.065 Sum_probs=96.2
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-C-----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522 162 FVENLFVKSALLDLYAKCGWIEDAWILFERIER-K-----DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL 235 (590)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 235 (590)
.+.+......+++.+....+.+.+..++.+... | -..+.+++++.|...|..+.++++++.=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344555666667777777777777777766654 1 2345679999999999999999999999999999999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 038522 236 GSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKY 280 (590)
Q Consensus 236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 280 (590)
+.+|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999888777777777666666665
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.085 Score=52.87 Aligned_cols=336 Identities=13% Similarity=0.059 Sum_probs=169.1
Q ss_pred cCCCCCHhhHHH-----HHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC---hHHHHHHHhccCC--
Q 038522 125 SGVRANQFTYSS-----ALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGW---IEDAWILFERIER-- 194 (590)
Q Consensus 125 ~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-- 194 (590)
-|++.+..-|.. +|.-+...+.+..|.++-..+...-..- ..+|......+.+..+ .+-+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 466666666654 4555667777888887776664322112 4566666666666532 2334444445554
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC----CCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHH
Q 038522 195 KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGM----KPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLT 270 (590)
Q Consensus 195 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (590)
....+|..+.+.....|+.+-|..+++.=...+. -.+..-+...+.-+...|+.+....++-++...- +...+
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l 581 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL 581 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence 4556788888888888888888887754322211 0122344555666677777777776666655421 11111
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCC-CccchHHHHHHHHhcCCChHHHHHHH--HHH----HHcCCCCCHHHHHHHHHH
Q 038522 271 GSLIDVYAKYGSIRSAYQLYRSMLKT-DIISCTALISGFARDDNHSKEAFDLF--KDM----ILKKMGIDDVILCLMLNI 343 (590)
Q Consensus 271 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~--~~~----~~~~~~p~~~~~~~ll~~ 343 (590)
+....+...|..+|.+..+. |..+ +-..|-...+ . ++...| +.. ...|..|+. .....+
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn-~-~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~ 647 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDN-H-QALASFHLQASYAAETIEGRIPAL---KTAANA 647 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccc-h-hhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence 11112233344444443221 1110 1111111111 1 111111 110 011222322 222333
Q ss_pred HhchhhhHh----------HHHHHHHHH-HhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038522 344 CANVASLNL----------GRQIHAFAF-KYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAK 412 (590)
Q Consensus 344 ~~~~~~~~~----------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 412 (590)
+.+.....- -..+.+.+. +.+.....-+.+--+.-+...|+..+|.++-.+.+-||-..|..-+.+++.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~ 727 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD 727 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence 333322111 111111111 122222233334445555666777777777777777777777777777777
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYN 492 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (590)
.+++++-.++-+.+. ++.-|.....+|.+.|+.++|.+++-+.. |.. -.+.+|.+.|++.+|.+
T Consensus 728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHH
Confidence 777766555544332 14455556677777777777777765553 111 35566777777777665
Q ss_pred HH
Q 038522 493 MI 494 (590)
Q Consensus 493 ~~ 494 (590)
.-
T Consensus 792 ~A 793 (829)
T KOG2280|consen 792 LA 793 (829)
T ss_pred HH
Confidence 53
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.63 E-value=0.00044 Score=62.16 Aligned_cols=61 Identities=8% Similarity=-0.055 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+..+..+|...|+++.|...|+++++..|++ +.++..++.+|...|++++|.+.++.+.+
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344444444555555555555555444432 22233334444455555555555554444
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.61 E-value=0.0012 Score=51.09 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=55.8
Q ss_pred HHHHHHhcCChHHHHHHHHhc---CCCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC---CcchHHHHHHHHH
Q 038522 477 VVDLFARRGQLESAYNMIRQM---NIKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPE---KSVNYVVLSNIYT 548 (590)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~ 548 (590)
+..++-..|+.++|+.+|++. +.... ...+-.+..++...|++++|+..+++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344555667777777777665 32222 234445556677777777777777777776665 4555566667777
Q ss_pred hcCChHHHHHHHHHhh
Q 038522 549 AAGAWDNARKTRKLME 564 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~ 564 (590)
..|+.++|++++-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777765543
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.61 E-value=9.7e-05 Score=51.19 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=27.0
Q ss_pred hcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522 483 RRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY 540 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 540 (590)
..|++++|++.|+++ ...| +...+..+...|.+.|++++|.+.++++...+|+++..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 344455555555544 2222 334444455555555555555555555555555443333
No 184
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00073 Score=64.44 Aligned_cols=119 Identities=8% Similarity=0.047 Sum_probs=95.9
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-C-----CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 038522 61 YESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE-R-----NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTY 134 (590)
Q Consensus 61 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 134 (590)
.+.+......+++......+++.+..++.+... | -..|..++|+.|...|..+.++.++..=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 355666777778888788888888888777654 2 2345679999999999999999999999899999999999
Q ss_pred HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 038522 135 SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKC 179 (590)
Q Consensus 135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (590)
+.+|..+.+.|++..|.++...|...+.-.+..++..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999988877767767766666665555
No 185
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.60 E-value=0.001 Score=49.22 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCC-CCChhhHHHHHHHhccCC--------ChhHHHHHHHHHHHhCCCCChhHHH
Q 038522 201 NAMIGGLAMQGFNDDSFWLFRSMMRQGM-KPDCFTLGSILRASVGGI--------ELMKISQIHDLIIKLGLESSNKLTG 271 (590)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (590)
...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-....+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 999999999999876643 3455678899999999999999999
Q ss_pred HHHHHHHh
Q 038522 272 SLIDVYAK 279 (590)
Q Consensus 272 ~l~~~~~~ 279 (590)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887765
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.063 Score=49.45 Aligned_cols=273 Identities=17% Similarity=0.141 Sum_probs=171.8
Q ss_pred cCChHHHHHHHHhc---cCCCccchHHHHHH--HHhcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhchhhhHh
Q 038522 280 YGSIRSAYQLYRSM---LKTDIISCTALISG--FARDDNHSKEAFDLFKDMILKKMGIDD--VILCLMLNICANVASLNL 352 (590)
Q Consensus 280 ~g~~~~a~~~~~~~---~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~ 352 (590)
.|+-..|.+.-.+. ...|....-.++.+ -.-.|+ ++.|.+-|+.|.. .|.. ..+..+.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~-~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGD-YEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCc-hHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 34555555444433 23343333333332 233466 7777777777763 2222 223334444456677777
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC-----CCCcc--hHHHHHHHHH---hcCCchHHHHH
Q 038522 353 GRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG-----DKNVI--SWTSLIAGYA---KHGYGHEAIEL 422 (590)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~ 422 (590)
|.++-+.....-+. -.-...+.++..+..|+++.|+++.+.-. +++.. .--.|+.+-. -..++..|...
T Consensus 173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 77776666554433 34455778888888999999999888654 34432 1122222111 12346666666
Q ss_pred HHHHHHcCCCCcHHH-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc----
Q 038522 423 YKKMKHEGMVPNDVT-FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM---- 497 (590)
Q Consensus 423 ~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 497 (590)
-.+..+ +.||... -..-..++.+.|+..++-.+++.+-+. .|.+...... .+.+.|+. ++.-+++.
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLE 322 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHH
Confidence 666554 5776543 334456788999999999999999865 6666655332 23455553 33333333
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhhcC
Q 038522 498 NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA-GAWDNARKTRKLMEERS 567 (590)
Q Consensus 498 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 567 (590)
..+| +..+...+..+....|++..|..-.+.+....| ...+|..|+.+-... |+-.++..++-+..+.-
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4455 456667777888899999999999999999999 778888999887765 99999999998766643
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.57 E-value=0.0025 Score=51.82 Aligned_cols=102 Identities=13% Similarity=0.173 Sum_probs=89.9
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC--CCcchH
Q 038522 466 RILPRAEHFSCVVDLFARRGQLESAYNMIRQM--N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP--EKSVNY 540 (590)
Q Consensus 466 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~ 540 (590)
.+.|++...-.|..++.+.|++.||...|++. | +.-|+...-.+.++....+++..|...++++.+..| ..|...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 56788888888999999999999999999998 4 445777888899999999999999999999999988 467788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 541 VVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 541 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
..++++|..+|++++|...|+...+.-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 899999999999999999999887644
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.56 E-value=0.015 Score=51.96 Aligned_cols=171 Identities=11% Similarity=0.087 Sum_probs=100.7
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCcc-h---HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhh
Q 038522 375 LIDMYAKSGEIADANRAFDEMGD--KNVI-S---WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACS 446 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~ 446 (590)
....+.+.|++++|.+.|+++.. |+.. . .-.++.++.+.+++++|...+++..+. .|+ ...+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 34445567888888888887764 3221 1 123556777788888888888888774 332 222333333322
Q ss_pred c--cC---------------C---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHH
Q 038522 447 H--TG---------------L---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLW 506 (590)
Q Consensus 447 ~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 506 (590)
. .+ + ...|...|+.+.++ -|+. .-..+|...+..+...--.. -
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~la~~-e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDRLAKY-E 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHHHHHH-H
Confidence 1 11 1 12445555555554 2332 11233333222221000001 1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
-.+.+-|.+.|.+..|..-++.+++.-|+. +.++..+..+|...|..++|.++...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 134456788999999999999999888754 4457778899999999999999887654
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.53 E-value=0.015 Score=53.61 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=47.4
Q ss_pred HHHHHHhhcc-CChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhcC---C-----CCCHh-
Q 038522 439 LSLLFACSHT-GLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQMN---I-----KPTAS- 504 (590)
Q Consensus 439 ~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~- 504 (590)
..+...|... |++++|.+.|++..+-+..... ..++..+...+.+.|++++|.++|++.. . +.+..
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344445555 6666666666665543211111 2344555666667777777777776651 0 11111
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
.+-..+-.+...||+..|...+++....+|
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 111222234456677777777777776666
No 190
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.52 E-value=0.079 Score=49.33 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=81.4
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIY 516 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 516 (590)
+.+..+.-|...|....|.++-.+. . .|+...|...+.+|+..+++++-.++... +-+|..|.-++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4455566677778877777765555 3 47888899999999999999888776543 33557788999999999
Q ss_pred CCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 517 GNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 517 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
|+..+|.....+ ..+..-...|.+.|+|.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence 999988888876 2235667778889999988766433
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0053 Score=52.95 Aligned_cols=130 Identities=8% Similarity=-0.079 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHH-----HH
Q 038522 404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSC-----VV 478 (590)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~ 478 (590)
+.++..+.-.|.+.-.+..+++.++..-+.++.....+.+.-.+.|+.+.|...|++..+. .-+.+...++. ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence 4444555555556566666666666433335555566666666666666666666655544 22222222222 22
Q ss_pred HHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 479 DLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
..|.-++++.+|...+.++ ..+.++...|.-.-...-.|+..+|++..+.+.+..|
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 2333444555555555554 1111222223222222234555555555555555555
No 192
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0025 Score=58.52 Aligned_cols=131 Identities=11% Similarity=0.217 Sum_probs=66.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH-hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA-CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL 480 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (590)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 34555555555555666666666665321 1122333332222 112344555666666666542 3345555666666
Q ss_pred HHhcCChHHHHHHHHhc-CCCCCH----hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 481 FARRGQLESAYNMIRQM-NIKPTA----SLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+.+..+.+++.+..|+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 66666666666666665 222222 35566665555666666666666666655553
No 193
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.0028 Score=53.36 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=43.4
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHH-
Q 038522 439 LSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACS- 514 (590)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~- 514 (590)
..+...+...|++++|...|++......-.+ ...++..+..++...|++++|+..+++. ...| ...++..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~ 118 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY 118 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3333344444555555555544442200000 1123444444555555555555555444 2222 2223333333333
Q ss_pred ------hcCCch-------HHHHHHHHHhcCCCCC
Q 038522 515 ------IYGNTS-------LGELAARNLFDMEPEK 536 (590)
Q Consensus 515 ------~~~~~~-------~a~~~~~~~~~~~p~~ 536 (590)
..|+++ +|...++++++.+|.+
T Consensus 119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 445544 5566666677777743
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.45 E-value=0.0005 Score=64.89 Aligned_cols=62 Identities=6% Similarity=-0.104 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV---NYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..|+.+..+|...|++++|+..++++++++|++.. +|++++.+|...|+.++|++.+++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444432 244444444444444444444444444
No 195
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.41 E-value=0.0027 Score=58.30 Aligned_cols=129 Identities=9% Similarity=0.063 Sum_probs=100.7
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhc--CCCCCHhHHHHHHHH
Q 038522 436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR-RGQLESAYNMIRQM--NIKPTASLWSAILGA 512 (590)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 512 (590)
.+|..++....+.+..+.|..+|.+..+. -..+..+|-.....-.. .++.+.|..+|+.. .++.+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888999999999999999853 22345556665555444 56777799999998 555677889999988
Q ss_pred HHhcCCchHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 513 CSIYGNTSLGELAARNLFDMEPEKS---VNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
+...|+.+.|..+|++++..-|.+. ..|..++..=.+.|+.+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999998777444 57888999888999999999999888774
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00038 Score=48.35 Aligned_cols=65 Identities=15% Similarity=0.256 Sum_probs=49.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC-CchHHHHHHHHHhcCCC
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYG-NTSLGELAARNLFDMEP 534 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 534 (590)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456677777788888888888888877 4344 4566777888888888 68888888888888877
No 197
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.016 Score=53.57 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHHc----CCCCc--HHHHHHHHHH
Q 038522 372 GNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKH-GYGHEAIELYKKMKHE----GMVPN--DVTFLSLLFA 444 (590)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~ 444 (590)
|...++.|...|++..|-+.+.. +...|... |++++|++.|++..+. | .+. ..++..+...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 34455667777777777666554 45666666 7888998888876542 3 221 3456677778
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCC-----Ch-hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC------HhHHHHHHH
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILP-----RA-EHFSCVVDLFARRGQLESAYNMIRQM-NIKPT------ASLWSAILG 511 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~ 511 (590)
+.+.|++++|.++|+++.... ... +. ..+-..+-++...||+..|.+.+++. ...|. ......|+.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~ 243 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE 243 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence 889999999999999887642 211 11 12333444667789999999999887 33332 234566666
Q ss_pred HHHh--cCCchHHHHHHHHHhcCCC
Q 038522 512 ACSI--YGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 512 ~~~~--~~~~~~a~~~~~~~~~~~p 534 (590)
++-. ...++.++.-|..+.+++|
T Consensus 244 A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 244 AYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHhCCHHHHHHHHHHHcccCccHH
Confidence 6632 2345556666665555555
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.38 E-value=0.061 Score=49.54 Aligned_cols=276 Identities=13% Similarity=0.039 Sum_probs=174.7
Q ss_pred cCChHHHHHHhhhC-CCCCCCcccHHHHHHHh--hcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522 10 TGQLKQALKFSLSC-PDTLLDPSTYMSLLQFC--IDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86 (590)
Q Consensus 10 ~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 86 (590)
.|+-..|.+.-.+. .-...|...+..+|.+- .-.|+++.|.+-|+.|.... +.-..-...|.-.--+.|+.+.|..
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHH
Confidence 57777888877777 45667777777777644 45689999999999997531 1111122333333446788888888
Q ss_pred HhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhh--HHHHHHHHh---ccCchhhHHHHHHHH
Q 038522 87 AFDRMPE--RN-VVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFT--YSSALRACA---RMRWLQGGRMIQGSI 157 (590)
Q Consensus 87 ~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~ 157 (590)
.-+..-. |. .-.+...+...+..|+++.|+++++.-++.. +.++..- -..|+.+-+ -..+...|...-.+.
T Consensus 176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 7776554 33 3467788999999999999999998877643 3444332 233333322 123566666665555
Q ss_pred HhcCCCCchHH-HHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHH-cCCCC-Ch
Q 038522 158 QKGRFVENLFV-KSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR-QGMKP-DC 232 (590)
Q Consensus 158 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p-~~ 232 (590)
.+ +.||..- -..-..++.+.|+..++-.+++.+=+ |.+..+. +....+.|+ .+++-++.... ..++| +.
T Consensus 256 ~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccch
Confidence 55 3454432 22335678889999999988888754 3333332 223334444 44444433322 12344 45
Q ss_pred hhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcc
Q 038522 233 FTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK-YGSIRSAYQLYRSML 294 (590)
Q Consensus 233 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~ 294 (590)
.+...+..+....|++..|..--+.... ..|....|..|.+.-.. .|+-.++...+.+..
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 5666677777888888887766665554 36778888877777654 499999999887773
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.37 E-value=0.065 Score=50.33 Aligned_cols=159 Identities=12% Similarity=0.036 Sum_probs=95.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC-------CcchHHHHHHHHHh---cCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522 374 ALIDMYAKSGEIADANRAFDEMGDK-------NVISWTSLIAGYAK---HGYGHEAIELYKKMKHEGMVPNDVTFLSLLF 443 (590)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 443 (590)
.++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566677777777777777643 11112233445555 7788888888888666556777778777766
Q ss_pred Hhhc---------cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---Hhc-------CCC
Q 038522 444 ACSH---------TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLE----SAYNMI---RQM-------NIK 500 (590)
Q Consensus 444 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~~ 500 (590)
.|-. ....++|+..|.+.- .+.|+...--.++..+...|... +..++- ..+ .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5432 123566777666555 34555333222233333333222 222222 111 123
Q ss_pred CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
.+-+.+.+++.++.-.|++++|.+.++++.++.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 45566688889999999999999999999999873
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.36 E-value=0.00026 Score=43.69 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
.+|..+..+|...|++++|++.++++++.+|+++.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999999888764
No 201
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.32 E-value=0.00087 Score=53.69 Aligned_cols=94 Identities=12% Similarity=-0.038 Sum_probs=69.0
Q ss_pred ccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHH
Q 038522 31 STYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYA 107 (590)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 107 (590)
.....+...+...|++++|.++|+.+...+ +.+..-|-.|..++-..|++++|+..|..... .|+.++-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344555566667788888888888887765 44666677777777788888888888877543 45667777778888
Q ss_pred hcCChHHHHHHHHHHHHc
Q 038522 108 QNGYDENALLVFSAMLRS 125 (590)
Q Consensus 108 ~~~~~~~a~~~~~~m~~~ 125 (590)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888877654
No 202
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.30 E-value=0.0047 Score=55.60 Aligned_cols=102 Identities=11% Similarity=0.084 Sum_probs=70.1
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC----CHhHHHHHH
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP----TASLWSAIL 510 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~ 510 (590)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...| .+..+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444566888888888888887631111 0245667778888888888888888887 2223 244555566
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPEKSV 538 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 538 (590)
..+...|+.+.|...|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6777889999999999999998885543
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.30 E-value=0.055 Score=53.11 Aligned_cols=56 Identities=27% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHHHHhccCchhhHH--HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc
Q 038522 134 YSSALRACARMRWLQGGR--MIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI 192 (590)
Q Consensus 134 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 192 (590)
++..=.+|.+.++..--+ --++++.+.|-.|+... +...++-.|++.+|-++|.+-
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 333334444444433322 23556777777777654 445567788888888888663
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.28 E-value=0.0028 Score=58.18 Aligned_cols=129 Identities=11% Similarity=-0.011 Sum_probs=83.9
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHH---HhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-------C-CCCCHh
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDM---INKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-------N-IKPTAS 504 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 504 (590)
.|..|...|.-.|+++.|+...+.- .+.+|-+.. ...+..+..++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3445555555667888887665432 222333222 445667778888888888888887764 2 122344
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcC----C--CCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDM----E--PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+..+|.++|.-..++++|+....+=+.+ + -....++.+|+.+|...|..+.|..+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777777777888888777665532 2 13456788888888888888888887766554
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.27 E-value=0.002 Score=54.21 Aligned_cols=88 Identities=13% Similarity=0.177 Sum_probs=64.7
Q ss_pred CCccchHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc----------------CchhhHHH
Q 038522 94 RNVVSWTAMISGYAQ-----NGYDENALLVFSAMLRSGVRANQFTYSSALRACARM----------------RWLQGGRM 152 (590)
Q Consensus 94 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~~ 152 (590)
.+..+|..+++.|.+ .|..+-....+..|.+-|+.-|..+|+.||..+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455556666665543 355666667777888888888888888888775432 24566788
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 038522 153 IQGSIQKGRFVENLFVKSALLDLYAKCGW 181 (590)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (590)
++++|...|+-||..++..+++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999988877665
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0033 Score=53.00 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=73.8
Q ss_pred HHHHhcc--CCCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCC------------
Q 038522 186 WILFERI--ERKDVVSWNAMIGGLAMQ-----GFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGI------------ 246 (590)
Q Consensus 186 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 246 (590)
...|+.. ..++-.+|..+++.|.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+..
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445444 345666777777777644 556666677888889999999999999998865432
Q ss_pred ----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 038522 247 ----ELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGS 282 (590)
Q Consensus 247 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 282 (590)
+-+-+.+++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 456789999999999999999999999999877654
No 207
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.15 E-value=0.026 Score=50.48 Aligned_cols=176 Identities=15% Similarity=0.072 Sum_probs=104.2
Q ss_pred CcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHH---HHHHHHHHhcCChHHHHHHhccCCC--CC--ccchHH
Q 038522 29 DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLS---TKVIIFYAKVGDVLSARKAFDRMPE--RN--VVSWTA 101 (590)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~ 101 (590)
++..+......+...|++++|...|+.+....+. +.... -.++.+|.+.++++.|...|++..+ |+ -..|..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3334444555666789999999999999887533 33333 4556778889999999999988765 32 123333
Q ss_pred HHHHHHh--c---------------CCh---HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC
Q 038522 102 MISGYAQ--N---------------GYD---ENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR 161 (590)
Q Consensus 102 li~~~~~--~---------------~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 161 (590)
.+.+.+. . .|. ..|++.|+++++. -|+.. -..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH-
Confidence 3443321 1 122 3455666666653 24332 223333322222221
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CC----cchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522 162 FVENLFVKSALLDLYAKCGWIEDAWILFERIER--KD----VVSWNAMIGGLAMQGFNDDSFWLFRSMM 224 (590)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (590)
.- ..--.+...|.+.|.+..|..-|+.+.+ |+ ......++.++...|..++|.+....+.
T Consensus 174 --la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 0011356678888888888887777764 32 2345567788888999988888776654
No 208
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.14 E-value=0.06 Score=52.83 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDE 394 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 394 (590)
+-+.+.-++++.++|-.|+.... ...|+-.|.+.+|.++|.. .|.+ |..+++|.....+|.|.+++..
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 44555566777778877876543 4456667777777766642 3332 4445555555555555555543
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0019 Score=45.32 Aligned_cols=64 Identities=11% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 479 DLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
..|.+.+++++|++.++++ ...| ++..|......+...|++++|.+.++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4677788888888888887 4444 45566777778888888888888888888888866655443
No 210
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.05 E-value=0.37 Score=47.40 Aligned_cols=182 Identities=13% Similarity=0.089 Sum_probs=121.5
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522 367 YDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF 443 (590)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 443 (590)
++...|...+....+.|+.+.+.-.|+...-|-. ..|-..+.-....|+.+-|..++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 3566777778888888999999999988875422 2444444444455888888888877665433323333222223
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhc-CCCCCHhHHHHHH-----HHH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAY---NMIRQM-NIKPTASLWSAIL-----GAC 513 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~ 513 (590)
-+...|+++.|..+++.+.+.+ |+ ...-..-+....+.|+.+.+. +++... ...-+......+. -.+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 3456789999999999999862 55 333334455667888888887 444444 2222333333222 223
Q ss_pred HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
...++.+.|..++.++.+..|.+...|..+......++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 45689999999999999999999999999988877776
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.03 E-value=0.018 Score=45.38 Aligned_cols=89 Identities=12% Similarity=0.072 Sum_probs=56.6
Q ss_pred HHHhcCChHHHHHHHHhc----CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcC
Q 038522 480 LFARRGQLESAYNMIRQM----NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN---YVVLSNIYTAAG 551 (590)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g 551 (590)
...+.|++++|.+.|+.+ +..| ....--.++.+|.+.++++.|...+++.++++|.++.+ ++..+.++..+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 345667777777777666 1112 23445566777788888888888888888888866554 444455555554
Q ss_pred C---------------hHHHHHHHHHhhhcCC
Q 038522 552 A---------------WDNARKTRKLMEERSL 568 (590)
Q Consensus 552 ~---------------~~~A~~~~~~~~~~~~ 568 (590)
. ..+|..-|+.+.++-+
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 4 5667777777666543
No 212
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.01 E-value=0.022 Score=44.03 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=62.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHH
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFA 482 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 482 (590)
+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566678888888888888888876654 34566677778888888888888888876521111 1222223345667
Q ss_pred hcCChHHHHHHHHhc
Q 038522 483 RRGQLESAYNMIRQM 497 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~ 497 (590)
..|+.++|++.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 788888888877543
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.99 E-value=0.00093 Score=47.71 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcC----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLFDM----EPE---KSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+++.+...|...|++++|+..+++++++ .++ -..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777777888888888888887732 222 245688888999999999999998887654
No 214
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.029 Score=50.07 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=79.6
Q ss_pred CcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhc-CCCC-CHhHHH
Q 038522 433 PNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG---QLESAYNMIRQM-NIKP-TASLWS 507 (590)
Q Consensus 433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~ 507 (590)
-|...|..|...|...|+.+.|...|.+..+- ..++...+..+..++.... ...++.++|+++ ...| |..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 37888999999999999999999999998864 2334666677777665432 456889999988 5555 555666
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEK 536 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 536 (590)
.|...+...|++.+|...|+.+++..|.+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 77788889999999999999999988844
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.53 Score=47.08 Aligned_cols=152 Identities=10% Similarity=0.025 Sum_probs=75.1
Q ss_pred CchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC-----CcchHHHHHHHHHhcCCchHHHHH
Q 038522 145 RWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK-----DVVSWNAMIGGLAMQGFNDDSFWL 219 (590)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~ 219 (590)
|.+++|+++|-+|-... .-+..+.+.|+|-...++++.-... -..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665544332 2344455556666655555543221 123456666666666666666665
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCcc
Q 038522 220 FRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDII 299 (590)
Q Consensus 220 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 299 (590)
|..-... ...+.++.+..++++.+.+- ..++.+....-.+.+++.+.|.-++|.+.|-+...|.
T Consensus 819 Y~~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-- 882 (1189)
T KOG2041|consen 819 YSYCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-- 882 (1189)
T ss_pred HHhccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence 5442211 01222222222222222221 1235555666667777777777777776665543331
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHH
Q 038522 300 SCTALISGFARDDNHSKEAFDLFKDM 325 (590)
Q Consensus 300 ~~~~l~~~~~~~~~~~~~a~~~~~~~ 325 (590)
..+.+|...++ +.+|.++-+..
T Consensus 883 ---aAv~tCv~LnQ-W~~avelaq~~ 904 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQ-WGEAVELAQRF 904 (1189)
T ss_pred ---HHHHHHHHHHH-HHHHHHHHHhc
Confidence 23344455555 66666655543
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.56 Score=46.92 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=10.5
Q ss_pred HHHhcCCchHHHHHHHHHH
Q 038522 409 GYAKHGYGHEAIELYKKMK 427 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~ 427 (590)
.+.+.|+.-+|-+++.+|.
T Consensus 932 ~~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 932 KDRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HhhhcccchhHHHHHHHHh
Confidence 3445555555556655554
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=96.88 E-value=0.02 Score=54.57 Aligned_cols=143 Identities=11% Similarity=0.069 Sum_probs=89.4
Q ss_pred chHHHHHHHHHHH-cCCCCc-HHHHHHHHHHhhcc---------CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 038522 416 GHEAIELYKKMKH-EGMVPN-DVTFLSLLFACSHT---------GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR 484 (590)
Q Consensus 416 ~~~a~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 484 (590)
.+.|+.+|.+... ..+.|+ ...|..+..++... ....+|.+.-++..+. -+.|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 4567888888772 224664 45666666555432 1234455555555532 123466666666667777
Q ss_pred CChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCChHHHHHHH
Q 038522 485 GQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV--LSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 485 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~ 560 (590)
++++.|..+|++. .+.|| ..+|......+...|+.+.|.+.++++++++|....+-.. .+..|+.. ..++|++++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 7788888888887 55665 4556666666777888888888888888888855444333 23345544 456666665
Q ss_pred H
Q 038522 561 K 561 (590)
Q Consensus 561 ~ 561 (590)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.044 Score=47.51 Aligned_cols=127 Identities=13% Similarity=0.034 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC-----CCCchHHHHHHHH
Q 038522 100 TAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR-----FVENLFVKSALLD 174 (590)
Q Consensus 100 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 174 (590)
+.++..+.-.|.+.-...++.+.++...+.++.....+.+.--+.||.+.|...++...+.. +.-+..+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 44555555666666666666666665545555556666666666677777777776555432 2222223333334
Q ss_pred HHHhcCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 038522 175 LYAKCGWIEDAWILFERIERK---DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQ 226 (590)
Q Consensus 175 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (590)
.|.-.+++..|...|.++... |+..-|.-.-+..-.|+..+|++.++.|+..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555666666666666542 3344444444444556666677777666654
No 219
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.81 E-value=0.47 Score=44.87 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCc---cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038522 62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNV---VSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL 138 (590)
Q Consensus 62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 138 (590)
+.|..+|-.|+..|..+|..++..+++++|..|-+ .+|..-+++-...+++.....+|.+-...... ...|..-+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence 66888899999999999999999999999888643 46777777777778888888888888776543 44555444
Q ss_pred HHH
Q 038522 139 RAC 141 (590)
Q Consensus 139 ~~~ 141 (590)
.-.
T Consensus 117 ~YI 119 (660)
T COG5107 117 EYI 119 (660)
T ss_pred HHH
Confidence 433
No 220
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.81 E-value=0.11 Score=40.01 Aligned_cols=140 Identities=15% Similarity=0.089 Sum_probs=83.0
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 038522 411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESA 490 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 490 (590)
.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+-+.+. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3457777778888877753 233444444443444444455566666664432221 23444444
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 491 YNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 491 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
..-+-.++ .+...+...+.+...+|+-++-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++.++-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44443332 233445566677788999999999999998655558999999999999999999999999999999875
No 221
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.48 Score=44.36 Aligned_cols=50 Identities=12% Similarity=-0.067 Sum_probs=31.5
Q ss_pred HHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 038522 38 QFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF 88 (590)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 88 (590)
..+.+..++..|+..+...++.. +.+..-|..-...+...|++++|..-.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccch
Confidence 34556667777777777777765 334555666666666667777665444
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.022 Score=52.90 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
.++..+.-+|.+.+++.+|+....+. .. ++|....-.=..++...|+++.|+..|+++++++|.|..+-..|..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35666778889999999999998887 33 44666777777899999999999999999999999999998888887776
Q ss_pred cCChHHH-HHHHHHhhh
Q 038522 550 AGAWDNA-RKTRKLMEE 565 (590)
Q Consensus 550 ~g~~~~A-~~~~~~~~~ 565 (590)
...+.+. .++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 6665554 788888866
No 223
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.68 E-value=0.14 Score=44.55 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=25.8
Q ss_pred ccccCChHHHHHHhhhC----CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038522 7 NFKTGQLKQALKFSLSC----PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITN 59 (590)
Q Consensus 7 ~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 59 (590)
+...|++++|+..|+.+ ++.+-...+...++.++.+.|++..|...++..++.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555555 222222234444455555555555555555555554
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.0061 Score=49.90 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-----cCCccCCC
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE-----RSLRKNPG 573 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 573 (590)
....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++++.+ -|+.|+|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4556677788899999999999999999999999999999999999999999999998854 47766653
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.65 E-value=0.072 Score=46.36 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=35.2
Q ss_pred CCchHHHHHHHHHhcCCCCCcch-----------------HHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 517 GNTSLGELAARNLFDMEPEKSVN-----------------YVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 517 ~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
+...+|...++.+++..|+++-. -..++..|.+.|.+..|..-++.+.+.-
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 34456677777777777755443 2246888999999999999999988753
No 226
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.63 E-value=0.013 Score=54.01 Aligned_cols=129 Identities=12% Similarity=-0.011 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHH----HHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhh---cCC-CCChh
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKM----KHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINK---YRI-LPRAE 472 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~ 472 (590)
.|..|...|.-.|+++.|+..-+.= .+-|-+. ....+..+..++.-.|+++.|.+.|+....- .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444444445556666665443321 1222111 2344555666666666666666666554321 011 11233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc--------CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM--------NIKPTASLWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
+..+|...|.-..++++|+.++.+- ...-...++.+|..++...|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4445566666666666776666543 111123455666667777777777776666655
No 227
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=1 Score=46.22 Aligned_cols=55 Identities=9% Similarity=0.189 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMK 427 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 427 (590)
.-++..+.+..+++.+..+.+...+.++..|..++..+++.+..+.-.+...+..
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 4466777888888999988888888889999999999999887666555544433
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.60 E-value=0.024 Score=43.25 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHhcCChHHHHHHHHhc-C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCCh
Q 038522 480 LFARRGQLESAYNMIRQM-N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV----NYVVLSNIYTAAGAW 553 (590)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~ 553 (590)
++...|+.+.|++.|.+. . .+..+..||.-..++.-+|+.++|+.-+++++++.-+... +|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777766 2 3345667777777777778888888888887776532222 255566777777888
Q ss_pred HHHHHHHHHhhhcC
Q 038522 554 DNARKTRKLMEERS 567 (590)
Q Consensus 554 ~~A~~~~~~~~~~~ 567 (590)
+.|+.-|+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 88877777665544
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.54 E-value=0.0037 Score=44.54 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc-----CCC---CC-HhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM-----NIK---PT-ASLWSAILGACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 531 (590)
+++.+...|...|++++|++.|++. ... |+ ..++..+...+...|++++|++.++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555555544 111 11 33455566666666666666666666553
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.011 Score=54.68 Aligned_cols=66 Identities=9% Similarity=0.052 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
.++..+...|.+.+++..|++...++++++|+|..+++.-+.+|...|+++.|+..|+++.+..+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 466778888899999999999999999999999999999999999999999999999999885543
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.49 E-value=0.038 Score=43.23 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc
Q 038522 369 AAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT 448 (590)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 448 (590)
..++..++.++++.|+++....+++..-..++..- ...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~-------~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK-------KKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc-------cccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 44566677777777777777666665432211100 00000 112334678888999999999989
Q ss_pred CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA 482 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (590)
|++..|.++++.+.+.++++.+..+|..|++-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999988888888888888877543
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.46 E-value=0.76 Score=43.45 Aligned_cols=163 Identities=13% Similarity=0.129 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCC--C-cHHHHHHHHHHhhc---cCChHHHHHHHHHHHhhcCCCCChhHHHH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMV--P-NDVTFLSLLFACSH---TGLTCEGWELFTDMINKYRILPRAEHFSC 476 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 476 (590)
...++-+|....+++..+++.+.+...... + ....--...-++.+ .|+.++|++++..+... .-.++++++..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 345666799999999999999999864111 1 22222233445556 89999999999996655 56778888888
Q ss_pred HHHHHHh---------cCChHHHHHHHHhc-CCCCCHhH---HHHHHHHHHhcC-CchHHHHHH---HHHh-c---CCC-
Q 038522 477 VVDLFAR---------RGQLESAYNMIRQM-NIKPTASL---WSAILGACSIYG-NTSLGELAA---RNLF-D---MEP- 534 (590)
Q Consensus 477 l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~~-~~~~a~~~~---~~~~-~---~~p- 534 (590)
+.+.|-. ....++|.+.|.+. .+.|+..+ +..|+....... .-.+..++. ..+. + ..+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877632 22477899999888 55665432 233333222111 111222222 1111 1 112
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 535 EKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 535 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
.+-..+.+++.+..-.|++++|.+..+.|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35556778999999999999999999999865
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.38 E-value=0.028 Score=49.50 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=47.2
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc----CCCC-CHhHHHHHH
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM----NIKP-TASLWSAIL 510 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~ 510 (590)
.|+.-+. +.+.|++..|...|....+.+.-.+ ....+-.|..++...|++++|..+|..+ +..| -+..+--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3344556666666666665431100 1223334555555555555555555544 1111 223344444
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPEK 536 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~~ 536 (590)
....+.|+.+.|...|+++.+..|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44445555555555555555555533
No 234
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.34 E-value=1.6 Score=45.31 Aligned_cols=116 Identities=10% Similarity=0.007 Sum_probs=61.9
Q ss_pred cCCchHHHHHHHHHHHc-CCCCcH--HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522 413 HGYGHEAIELYKKMKHE-GMVPND--VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES 489 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~-g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (590)
..+.+.|...+...... ++.+.. .....+.......+...++...++..... ..+......-+....+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 44567777777776433 233322 22333332233322245555555554322 2344445555555567778877
Q ss_pred HHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522 490 AYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 490 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 531 (590)
+...+..| ...-...-.--+.+++...|+.++|...|+++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777777 1121222233455555567888888888877643
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.30 E-value=0.24 Score=43.44 Aligned_cols=54 Identities=11% Similarity=0.050 Sum_probs=29.5
Q ss_pred cccCChHHHHHHhhhC-CCCCC---CcccHHHHHHHhhcccchhHHHHHHHHHHHhcC
Q 038522 8 FKTGQLKQALKFSLSC-PDTLL---DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGY 61 (590)
Q Consensus 8 ~~~g~~~~a~~~~~~~-~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 61 (590)
.+.|++++|.+.|+.+ ...+- ...+...++.++.+.++++.|....++.++..+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 3456666666666666 22222 223444455555666666666666666665543
No 236
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.20 E-value=0.052 Score=47.88 Aligned_cols=92 Identities=15% Similarity=0.193 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCC----cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVP----NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCV 477 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 477 (590)
|+.-+.. .+.|++..|...|...++. -| .+..+-.|.+++...|++++|..+|..+.+.++-.|. ++.+-.|
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4444433 3445566666666666654 22 1233444566666666666666666666665544444 3556666
Q ss_pred HHHHHhcCChHHHHHHHHhc
Q 038522 478 VDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~ 497 (590)
.....+.|+.++|...|++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666665
No 237
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.75 Score=39.83 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc-------CCCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhc----CCCCCcchH
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM-------NIKPTA-SLWSAILGACSIYGNTSLGELAARNLFD----MEPEKSVNY 540 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~ 540 (590)
.+..+.+.+.+..++++|-..+.+- ..-|+. ..+-..+-.+....++..|+..++.-.+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3445556777778887776666554 112222 2344455566677788899988888654 346677778
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 038522 541 VVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 541 ~~l~~~~~~~g~~~~A~~~~~ 561 (590)
..|+.+| ..|+.+++.+++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHHc
Confidence 8887766 6788888777654
No 238
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=1.8 Score=43.93 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=78.5
Q ss_pred CcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHH
Q 038522 433 PNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGA 512 (590)
Q Consensus 433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 512 (590)
....+.+--+.-+...|+..+|.++-.+++ -||...|..-+.++...+++++-+++-+... .+..|.-+..+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 333444445556667788888887776665 5788888878888888888888777776653 24556677788
Q ss_pred HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522 513 CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (590)
|.+.|+.++|....-+.-.+ .-...+|.+.|++.+|.++--
T Consensus 754 c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 88888888887766543322 256777888888888876543
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.10 E-value=0.045 Score=52.19 Aligned_cols=62 Identities=10% Similarity=0.064 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh----HHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS----LWSAILGACSIYGNTSLGELAARNLFDM 532 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 532 (590)
...++.+..+|...|++++|+..|++. .+.|+.. +|..+..+|...|++++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666777777777777777777775 5556533 4677777777777777777777777776
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.09 E-value=0.29 Score=48.70 Aligned_cols=159 Identities=11% Similarity=0.046 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH------HHHHHHHHHhhc----cCChHHHHHHHHHHHhhcCCCCChhH
Q 038522 404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPND------VTFLSLLFACSH----TGLTCEGWELFTDMINKYRILPRAEH 473 (590)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 473 (590)
..++....-.|+-+.+++.+.+..+.+---.+ ..|..++..+.. ..+.+.|.++++.+.++ -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 34444445556666666666665542211111 123333333332 44677888999998865 567655
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHhc-CCCC-----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH-HHH
Q 038522 474 FSCV-VDLFARRGQLESAYNMIRQM-NIKP-----TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV-LSN 545 (590)
Q Consensus 474 ~~~l-~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~ 545 (590)
|... .+.+...|++++|++.|+++ .... ....+-.+...+....++++|...+.++.+.+.-+...|.. .+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 5443 45567789999999999876 1111 22345556677888999999999999999988765555554 466
Q ss_pred HHHhcCCh-------HHHHHHHHHhhh
Q 038522 546 IYTAAGAW-------DNARKTRKLMEE 565 (590)
Q Consensus 546 ~~~~~g~~-------~~A~~~~~~~~~ 565 (590)
++...|+. ++|.+++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77788999 889999988765
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.07 E-value=0.92 Score=39.91 Aligned_cols=57 Identities=23% Similarity=0.216 Sum_probs=44.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSV---NYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+.+-|.+.|.+..|..-++.+++.-|+.+. ++..+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445678899999999999999988775444 466677889999999999987765544
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.06 E-value=1 Score=40.21 Aligned_cols=194 Identities=17% Similarity=0.128 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH-
Q 038522 370 AVGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF- 443 (590)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 443 (590)
..+......+...+.+..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444455555555556555555554431 222344444455555555666666666655532222 111111122
Q ss_pred HhhccCChHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC--HhHHHHHHHHHHhcCC
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRI--LPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT--ASLWSAILGACSIYGN 518 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~ 518 (590)
.+...|+++.+...+.+.... .. ......+......+...++.+++...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455666666666666666421 10 012223333333345566666666666665 22232 4455555566666666
Q ss_pred chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 519 TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
++.+...+..+....|.....+..++..+...|.++++...++...+
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665445555555555555556666666665544
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.092 Score=47.33 Aligned_cols=160 Identities=14% Similarity=0.019 Sum_probs=118.3
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHH----HHHHHHhcCC
Q 038522 411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSC----VVDLFARRGQ 486 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~ 486 (590)
..+|+..+|-..|+++.+. .+.|...+...-.+|...|+.+.-...++++..++ .|+...|.. +.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence 4578888999999999885 55578888888889999999999999999988643 455544443 3344568899
Q ss_pred hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC-C---cchHHHHHHHHHhcCChHHHHHHH
Q 038522 487 LESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE-K---SVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 487 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~---~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
+++|.+.-++. .+.| |.....+........|++.++.++..+-...=-+ . .-.|-..+..+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999888 5444 5566667777777889999999988876533221 1 123556777888889999999999
Q ss_pred HHhhhcCCccCCC
Q 038522 561 KLMEERSLRKNPG 573 (590)
Q Consensus 561 ~~~~~~~~~~~~~ 573 (590)
+.=.-..+.++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8765555555554
No 244
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=2.3 Score=43.88 Aligned_cols=146 Identities=9% Similarity=-0.023 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCccchH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 038522 67 LSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWT---AMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR 143 (590)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 143 (590)
....-+..+.+...++-|..+-+.-..+....-+ .-.+.+.+.|++++|...|-+-+.. +.|+ .++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 3445566667777777777776654432221111 2223455778888888777666532 3332 35555666
Q ss_pred cCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCc-chHHHHHHHHHhcCCchHHHHH
Q 038522 144 MRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDV-VSWNAMIGGLAMQGFNDDSFWL 219 (590)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~ 219 (590)
...+..-..+++.+.+.|+.. ....+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|.-+
T Consensus 410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 666777777888888887543 34455678888888888887777766552111 1133344444444444444433
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.25 Score=44.66 Aligned_cols=157 Identities=8% Similarity=-0.001 Sum_probs=108.3
Q ss_pred hcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHH----HHHHHhhccCChHH
Q 038522 381 KSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL----SLLFACSHTGLTCE 453 (590)
Q Consensus 381 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~~~ 453 (590)
-.|+..+|-..++++.+ .|..++.--=.+|...|+.+.-...+++.... ..|+...|. ++.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34777788778888774 36667777778899999999988899888764 355554433 23334568899999
Q ss_pred HHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCC----CHhHHHHHHHHHHhcCCchHHHHHH
Q 038522 454 GWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQMN--IKP----TASLWSAILGACSIYGNTSLGELAA 526 (590)
Q Consensus 454 a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p----~~~~~~~l~~~~~~~~~~~~a~~~~ 526 (590)
|.+.-++..+ +.| |.-...++...+-..|++.++.+++.+-. -+. -...|-...--+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999888874 333 45556677777888899999999988761 111 0112222333345678999999999
Q ss_pred HHHh--cCCCCCcchHH
Q 038522 527 RNLF--DMEPEKSVNYV 541 (590)
Q Consensus 527 ~~~~--~~~p~~~~~~~ 541 (590)
.+=+ +++.+|..+..
T Consensus 271 D~ei~k~l~k~Da~a~~ 287 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARD 287 (491)
T ss_pred HHHHHHHhhccchhhhh
Confidence 8765 56666666654
No 246
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.51 Score=42.25 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=74.5
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHH---HHHHHHhcCCch
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA---ILGACSIYGNTS 520 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 520 (590)
.....|++.+|...|+..... .+-+....-.++++|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 355667777888877777754 122345566677788888888888888887733332222222 122222333333
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 521 LGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
... .+++-...+|+|...-..|+..|...|+.++|.+.+-.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 234445567888888888888888888888888877777664
No 247
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.83 E-value=0.72 Score=37.27 Aligned_cols=126 Identities=10% Similarity=0.000 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA 482 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (590)
...++..+...+.+.....+++.+...+ ..++..++.++..|++.+ .....+.++. .++.......++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3445555555666667777777666654 245556666666666542 2333333331 112233344566666
Q ss_pred hcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 483 RRGQLESAYNMIRQMNIKPTASLWSAILGACSIY-GNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
+.+-++++.-++.++|. +...+..+... ++++.|.+.+++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 66666677777666642 12222222233 666666666664 224455555555443
No 248
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.76 E-value=0.08 Score=46.51 Aligned_cols=109 Identities=11% Similarity=0.151 Sum_probs=79.2
Q ss_pred HHHhccCC--CCCccchHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC------------
Q 038522 85 RKAFDRMP--ERNVVSWTAMISGYAQN-----GYDENALLVFSAMLRSGVRANQFTYSSALRACARMR------------ 145 (590)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------ 145 (590)
++.|.... ++|-.+|-..+..+... +..+-....++.|.+-|+.-|..+|+.||..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555554 46777777777766533 456667778899999999999999999998764432
Q ss_pred ----chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh-HHHHHHHhccC
Q 038522 146 ----WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI-EDAWILFERIE 193 (590)
Q Consensus 146 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~ 193 (590)
+-+-+..++++|..+|+.||..+-..|++++.+.+-. .+..++.-.|+
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 3445678999999999999999999999999887653 33344443333
No 249
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.73 E-value=0.07 Score=43.61 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522 405 SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM 461 (590)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 461 (590)
.++..+...|++++|..+++++.... +-|...|..++.++...|+..+|.+.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444445555555555555555431 224445555555555555555555555544
No 250
>PRK15331 chaperone protein SicA; Provisional
Probab=95.70 E-value=0.034 Score=45.03 Aligned_cols=90 Identities=6% Similarity=-0.138 Sum_probs=67.7
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCC---CCCccchHHHHHHHHhcC
Q 038522 34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMP---ERNVVSWTAMISGYAQNG 110 (590)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~ 110 (590)
....--+...|++++|..+|+-+...+ +-+..-+..|..++-..+++++|...|.... ..|+..+-....++...|
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 334445567789999999999888776 3456667778888888889999988887532 245555556678888889
Q ss_pred ChHHHHHHHHHHHH
Q 038522 111 YDENALLVFSAMLR 124 (590)
Q Consensus 111 ~~~~a~~~~~~m~~ 124 (590)
+.+.|...|+...+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988877
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.69 E-value=0.39 Score=38.13 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=15.3
Q ss_pred chHHHHHHHHHhcCCCCCcc
Q 038522 519 TSLGELAARNLFDMEPEKSV 538 (590)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~ 538 (590)
...|...|+++++.-|++.-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 56788888888888886543
No 252
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.44 Score=38.77 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=23.0
Q ss_pred hcCCchHHHHHHHHHh-cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 515 IYGNTSLGELAARNLF-DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 515 ~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+|-+++.....+.+. +.+|-...+-..|+.+-.+.|++.+|.++|+.+..
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444444444333 23333344444444444455555555555544433
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.58 E-value=0.21 Score=44.04 Aligned_cols=125 Identities=11% Similarity=0.058 Sum_probs=86.2
Q ss_pred HHhhhCCCCCCCcccHHHHHHHhhcc-----cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 038522 18 KFSLSCPDTLLDPSTYMSLLQFCIDK-----KAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMP 92 (590)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 92 (590)
+.|+.+.+..-|..+|...+..+... +.++.-...++.|.+-|+..|..+|+.|++.+-+-.-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------- 123 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------- 123 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----------
Confidence 34444455566777888888777643 56777888889999999999999999999887542211
Q ss_pred CCCccchHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch-hhHHHHHHHHH
Q 038522 93 ERNVVSWTAMISGYAQN-GYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWL-QGGRMIQGSIQ 158 (590)
Q Consensus 93 ~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~ 158 (590)
.-|.+-..+..- .+-+-+++++++|...|+.||..+-..++.++.+.+.. .+...++-.|-
T Consensus 124 -----P~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 124 -----PQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -----cHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 111122222222 23356899999999999999999999999999887753 33344444443
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.58 E-value=0.28 Score=47.16 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPE--KSVNYVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
..+...+.+.|+.++|++.++++++..|. +...+..|+.++...+++.++..++.+-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444445555555555555555554442 3334555555555555555555555554
No 255
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.57 E-value=0.037 Score=42.29 Aligned_cols=59 Identities=14% Similarity=0.010 Sum_probs=54.0
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-cCCc
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE-RSLR 569 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 569 (590)
.+....|+.+.|++.|.+++.+-|.++++|+.-+.++.-+|+.++|+.-+++..+ .|.+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 4566889999999999999999999999999999999999999999999999888 5544
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.44 E-value=2.5 Score=40.27 Aligned_cols=466 Identities=11% Similarity=0.100 Sum_probs=216.1
Q ss_pred HHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-
Q 038522 15 QALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE- 93 (590)
Q Consensus 15 ~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 93 (590)
+-+.+=+++...|.|...|-.|++-+..++..++..+++++|..- ++.-+.+|..-+..-....++...+.+|.+-..
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 334555666778888899999999999999999999999999753 344566777777777777899999998887543
Q ss_pred -CCccchHHHHHHHHhcCChH------HHHHHHHHHHH-cCCCCCHhh-HHHHHHH---HhccCc------hhhHHHHHH
Q 038522 94 -RNVVSWTAMISGYAQNGYDE------NALLVFSAMLR-SGVRANQFT-YSSALRA---CARMRW------LQGGRMIQG 155 (590)
Q Consensus 94 -~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~-~~~~p~~~~-~~~ll~~---~~~~~~------~~~a~~~~~ 155 (590)
-+...|..-+..-.+.++.- ...+.|+-... .++.|-... |+..+.- .-..|. ++..+..+.
T Consensus 106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 45666777666544433211 11222222221 233333222 2222221 111222 222222333
Q ss_pred HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHH--cCCC---
Q 038522 156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR--QGMK--- 229 (590)
Q Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~--- 229 (590)
.++... -|++++-++-|+.... -|..|-.-++. -..--+-.|...+++... .|++
T Consensus 186 ral~tP-----------------~~nleklW~dy~~fE~e~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~ 246 (660)
T COG5107 186 RALQTP-----------------MGNLEKLWKDYENFELELNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKN 246 (660)
T ss_pred HHHcCc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccC
Confidence 332211 1222222222222110 00000000000 000001223333333321 1221
Q ss_pred -CChhhHHHHHH-----------Hhcc-----CCC--hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 038522 230 -PDCFTLGSILR-----------ASVG-----GIE--LMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLY 290 (590)
Q Consensus 230 -p~~~~~~~ll~-----------~~~~-----~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 290 (590)
-+..|++.+-+ -=.. .|+ .+...-++++.... +.-...+|--....+...++-+.|+...
T Consensus 247 ~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv 325 (660)
T COG5107 247 PINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTV 325 (660)
T ss_pred chhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHH
Confidence 12222222111 0000 000 11111122222211 1223333333334445566777777766
Q ss_pred HhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---chhhhHhHHHHHHHHHHhCCCc
Q 038522 291 RSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICA---NVASLNLGRQIHAFAFKYQSSY 367 (590)
Q Consensus 291 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~ 367 (590)
....+-.+. ....+.-|-...++.+.....|+...+.= ..-| ..+.+-+ ..|+.+.-.++ +.++. ..
T Consensus 326 ~rg~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~y-s~~~s~~~s~~D~N~e~~~El---l~kr~-~k 395 (660)
T COG5107 326 ERGIEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKY-SMGESESASKVDNNFEYSKEL---LLKRI-NK 395 (660)
T ss_pred HhcccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHH-hhhhhhhhccccCCccccHHH---HHHHH-hh
Confidence 655322211 22222333222221333333333322100 0000 0000000 01112111111 11111 11
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLL 442 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 442 (590)
-..++.+.++.-.+..-++.|+.+|-++.+ +++..+++++.-++ .|++.-|..+|+--... +..++.-....+
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl 473 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL 473 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence 234556667777777778888888877764 46667777777665 45667777777764443 222333334555
Q ss_pred HHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHH
Q 038522 443 FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGAC 513 (590)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 513 (590)
.-+...++-+.|..+|+....+..-.--...|..+|+.-..-|++..+..+=+++ ..-|...+...+..-|
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry 545 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHH
Confidence 5666777788888888865543111112567777777777778877777666666 3344444444444333
No 257
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.43 E-value=0.28 Score=38.47 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHH--------------hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc----
Q 038522 436 VTFLSLLFACSHTGLTCEGWELFTDMI--------------NKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM---- 497 (590)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 497 (590)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 444555555555555555555544332 11134455555555555555555555555555444
Q ss_pred CCCCCHhHHHHHHH
Q 038522 498 NIKPTASLWSAILG 511 (590)
Q Consensus 498 ~~~p~~~~~~~l~~ 511 (590)
+++-+...|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 44444555555553
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.41 E-value=1.2 Score=43.01 Aligned_cols=97 Identities=13% Similarity=0.223 Sum_probs=66.7
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-C-CCCH--hHHHHHHHHHH
Q 038522 439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN-I-KPTA--SLWSAILGACS 514 (590)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 514 (590)
..+..++-+.|+.++|++.++++.+.+....+......|+.++...+.+.++..++.+.. + -|.. .+|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667778999999999999998753322235577789999999999999999998882 2 2332 34554443333
Q ss_pred hcCC---------------chHHHHHHHHHhcCCCC
Q 038522 515 IYGN---------------TSLGELAARNLFDMEPE 535 (590)
Q Consensus 515 ~~~~---------------~~~a~~~~~~~~~~~p~ 535 (590)
..++ -..|.+...++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 3332 12356788888888873
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.38 E-value=2.7 Score=40.37 Aligned_cols=149 Identities=9% Similarity=-0.009 Sum_probs=79.9
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC---cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhH
Q 038522 399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP---NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEH 473 (590)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 473 (590)
...+|..++..+.+.|+++.|...+.++...+..+ .+.....-+...-..|+..+|...++...+. ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777888888888888888888877643211 2333333445566677888888888777762 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhcCCCCCHhHHHHHHHHHHh------cCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522 474 FSCVVDLFARRGQLESAYNM-IRQMNIKPTASLWSAILGACSI------YGNTSLGELAARNLFDMEPEKSVNYVVLSNI 546 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 546 (590)
...+...+.. ..+..... ........-...+..+..-+.. .++.+.+...|+.+.++.|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222222223 3788899999999999999888888888877
Q ss_pred HHhc
Q 038522 547 YTAA 550 (590)
Q Consensus 547 ~~~~ 550 (590)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6654
No 260
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.37 E-value=0.028 Score=32.06 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 506 WSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
|..+...+...|++++|++.++++++++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 34444444455555555555555555544
No 261
>PRK11906 transcriptional regulator; Provisional
Probab=95.33 E-value=1 Score=43.38 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=87.4
Q ss_pred ChHHHHHHHHhcC---CCC---cchHHHHHHHHHhc---------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc
Q 038522 384 EIADANRAFDEMG---DKN---VISWTSLIAGYAKH---------GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT 448 (590)
Q Consensus 384 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 448 (590)
..+.|..+|.+.. .-| ...|..+..++... ....+|.++.++..+.+ +-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567777888776 333 23444444433321 12345666666666653 34677777777766777
Q ss_pred CChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh---HHHHHHHHHHhcCCchHHH
Q 038522 449 GLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS---LWSAILGACSIYGNTSLGE 523 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~ 523 (590)
++++.|...|++.. .+.|| ...|........-.|+.++|.+.+++. ...|... .....+..|+ ..-.+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 77888888888887 45666 445555555666788888888888885 6566432 2222233443 34566677
Q ss_pred HHHHHHhcCCC
Q 038522 524 LAARNLFDMEP 534 (590)
Q Consensus 524 ~~~~~~~~~~p 534 (590)
.+|-+-.+...
T Consensus 428 ~~~~~~~~~~~ 438 (458)
T PRK11906 428 KLYYKETESES 438 (458)
T ss_pred HHHhhcccccc
Confidence 76665444443
No 262
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.29 E-value=0.022 Score=32.52 Aligned_cols=30 Identities=10% Similarity=0.112 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
+|..+...+...|++++|+..++++++++|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 445555555555555555555555555555
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.22 E-value=0.65 Score=45.57 Aligned_cols=157 Identities=12% Similarity=0.086 Sum_probs=93.2
Q ss_pred HHHHhcCChHHHHHHHH--HHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 038522 104 SGYAQNGYDENALLVFS--AMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGW 181 (590)
Q Consensus 104 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (590)
+...-.++++.+.++.+ ++.. .+ | ....+.+++-+-+.|..+.|.++-..-. .-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 44556677777766664 1111 12 2 4446677777778888888777654321 23455677888
Q ss_pred hHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHh
Q 038522 182 IEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKL 261 (590)
Q Consensus 182 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 261 (590)
++.|.++.++.. +...|..|.....++|+++-|.+.|.+..+ +..++-.+...|+.+...++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888887765 556889999999999999999888877543 455555666777777777776666655
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 262 GLESSNKLTGSLIDVYAKYGSIRSAYQLYRS 292 (590)
Q Consensus 262 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 292 (590)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 41 23333444555666666665544
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=1.6 Score=39.28 Aligned_cols=167 Identities=13% Similarity=0.053 Sum_probs=103.5
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522 387 DANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR 466 (590)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 466 (590)
...++++++..+....--.-.......|++.+|...|+...... +-+......+..++...|+.+.|..++..+-.. .
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 33445555544322222222345566788888888888887752 224455667778888888888888888877543 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC--CCCcchHHHH
Q 038522 467 ILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKP-TASLWSAILGACSIYGNTSLGELAARNLFDME--PEKSVNYVVL 543 (590)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l 543 (590)
-.........-+..+.+.....+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111222334555666666666666666664455 55566677777888888888888877777543 3566677777
Q ss_pred HHHHHhcCChHH
Q 038522 544 SNIYTAAGAWDN 555 (590)
Q Consensus 544 ~~~~~~~g~~~~ 555 (590)
..++...|.-+.
T Consensus 279 le~f~~~g~~Dp 290 (304)
T COG3118 279 LELFEAFGPADP 290 (304)
T ss_pred HHHHHhcCCCCH
Confidence 777777764443
No 265
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.00 E-value=0.43 Score=43.75 Aligned_cols=222 Identities=8% Similarity=-0.047 Sum_probs=97.1
Q ss_pred HhcCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh--CCCcc---hhHHHHHHHHHHh
Q 038522 309 ARDDNHSKEAFDLFKDMILKK--MGIDDVILCLMLNICANVASLNLGRQIHAFAFKY--QSSYD---AAVGNALIDMYAK 381 (590)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 381 (590)
....+ .++|+..+.+-.++- ...-..++..+..+.+..|.++++...--.-++. ....+ -..|..+.+++.+
T Consensus 17 y~s~~-~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 17 YQSNQ-TEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred hcCch-HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445 777777777665431 1112245556666667777766665542211110 01111 1122222233333
Q ss_pred cCChHHHHHHHHhcCC-CC-------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC--cHHHHHHHHHHhhcc
Q 038522 382 SGEIADANRAFDEMGD-KN-------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM---VP--NDVTFLSLLFACSHT 448 (590)
Q Consensus 382 ~~~~~~A~~~~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~ 448 (590)
.-++.+++.+-..-.. |. -....++..++...+.++++++.|+...+-.- .| ....+..|-..|...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 3333333332221110 10 01223344555555566666666665543211 11 224455555566666
Q ss_pred CChHHHHHHHHHHHh---hcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhc-------CCCC-CHhHHHHHHHH
Q 038522 449 GLTCEGWELFTDMIN---KYRILPRAEHFS-----CVVDLFARRGQLESAYNMIRQM-------NIKP-TASLWSAILGA 512 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~ 512 (590)
.++++|.-+..+..+ .+++..-..-|. .+.-++...|..-.|.+..++. |..| .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666555444322 112221112222 2223444455555555544443 2222 22334445555
Q ss_pred HHhcCCchHHHHHHHHHhc
Q 038522 513 CSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~ 531 (590)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666665553
No 266
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.00 E-value=3.8 Score=39.79 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=57.7
Q ss_pred HHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHH-HHhcCChHHHHHHhccC
Q 038522 14 KQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIF-YAKVGDVLSARKAFDRM 91 (590)
Q Consensus 14 ~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~ 91 (590)
..-..+|+.+ ...+-|+..|...+..|-+.+.+.+...+|..|...+ +.++..|-.-... |-....++.|..+|..-
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 3445677777 5566699999999999999988999999999998875 4455555443333 33344599999988876
Q ss_pred CC
Q 038522 92 PE 93 (590)
Q Consensus 92 ~~ 93 (590)
.+
T Consensus 167 LR 168 (568)
T KOG2396|consen 167 LR 168 (568)
T ss_pred hh
Confidence 65
No 267
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.94 E-value=0.17 Score=42.08 Aligned_cols=101 Identities=10% Similarity=0.066 Sum_probs=69.9
Q ss_pred HHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHh
Q 038522 443 FACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSI 515 (590)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 515 (590)
.-+...|++++|..-|...... .++. ...|..-..++.+.+.++.|++-..+. .+.|. ......-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 4577889999999999998864 2222 223444445677888889888888776 55553 2233333456778
Q ss_pred cCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 516 YGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
...++.|+.-|+++++.+|....+-...++
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 889999999999999999966655444444
No 268
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.77 E-value=3.4 Score=38.23 Aligned_cols=54 Identities=22% Similarity=0.288 Sum_probs=26.6
Q ss_pred HhhccCChHHHHHHHHHHHhhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 444 ACSHTGLTCEGWELFTDMINKY---RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
++...|....|.+..++..+-. |-.+. ......+.+.|...|+.+.|..-|+.+
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 4445555555555555543321 22221 233445556666666666665555543
No 269
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.76 E-value=0.46 Score=46.64 Aligned_cols=156 Identities=15% Similarity=0.068 Sum_probs=96.6
Q ss_pred HHHhcCChHHHHHHHH--hcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHH
Q 038522 378 MYAKSGEIADANRAFD--EMG-DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEG 454 (590)
Q Consensus 378 ~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 454 (590)
...-.++++++.++.+ ++. .-+..-.+.++.-+.+.|.++.|+++.+.-.. -.+...+.|+++.|
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHH
Confidence 3445677777665554 221 11233466777777778888777766543221 12344577888888
Q ss_pred HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 455 WELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
.++.+. .++...|..|.+...+.|+++-|.+.|++.+ -+..|+-.|...|+.++-.++.+.+...+-
T Consensus 338 ~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 776532 3466788888888888999999988888875 356666677788888777777777665554
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522 535 EKSVNYVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 535 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
++....++.-.|+.++..++|.+.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 555566677788998888888754
No 270
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.72 E-value=2.9 Score=37.12 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=129.1
Q ss_pred HHHHHHHHHHhchhhhHhHHHHHHHHHHh-CCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCc-chHHHHHH-H
Q 038522 335 VILCLMLNICANVASLNLGRQIHAFAFKY-QSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--KNV-ISWTSLIA-G 409 (590)
Q Consensus 335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~ 409 (590)
..+......+...+....+...+...... ........+......+...+++..+...+..... ++. ........ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444445555555444444432 2233444555556666666777777777777664 222 22333333 6
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCC----cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhc
Q 038522 410 YAKHGYGHEAIELYKKMKHEGMVP----NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARR 484 (590)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 484 (590)
+...|+++.|...+++... ..| ....+......+...++.+.+...+...... ... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence 7888999999999998865 233 3334444444466788999999999999864 222 366777888888899
Q ss_pred CChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 485 GQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 485 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999888 44554 445555555555677899999999999999995
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.71 E-value=0.063 Score=32.90 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 537 SVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 537 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
|.++..++.+|...|++++|.++++++.+..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 357889999999999999999999999987653
No 272
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.67 E-value=1.6 Score=33.90 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522 199 SWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGL 263 (590)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 263 (590)
..+..+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34556677788888888888888876533 67777778888888888888888888888887774
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.60 E-value=0.069 Score=30.97 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 539 NYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 539 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
No 274
>PRK09687 putative lyase; Provisional
Probab=94.57 E-value=3.7 Score=37.73 Aligned_cols=73 Identities=7% Similarity=-0.015 Sum_probs=30.6
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 445 (590)
+..+....+.++++.|+.+..-.+.+.+..++ .....+.++...|.. +|+..+.++.+. .||...-...+.+|
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 33333444445555554332222223322222 122344455555543 455555555542 33444444444433
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.53 E-value=2.3 Score=35.13 Aligned_cols=134 Identities=9% Similarity=0.038 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHhccC
Q 038522 116 LLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCG--WIEDAWILFERIE 193 (590)
Q Consensus 116 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 193 (590)
.++++.+.+.+++|+...+..++..+.+.|.+.... .++..++-+|.......+-.+.... -..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 456667777888899999999999998888765544 3444455555444333332222211 1233445555544
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHh
Q 038522 194 RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKL 261 (590)
Q Consensus 194 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 261 (590)
..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..+++-..+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2466777888889999999988877532 22233355666776777766666666655543
No 276
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.43 E-value=0.53 Score=46.95 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=101.0
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChh-----HHHHHHHHHH----hcCChHHH
Q 038522 420 IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAE-----HFSCVVDLFA----RRGQLESA 490 (590)
Q Consensus 420 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~~~A 490 (590)
..+|+-+... ++| .+..+++...-.|+-+.+++.+.+..+..++.-... .|...+..+. .....+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4556666654 444 345567777778999999999988776533332221 2333333333 24577889
Q ss_pred HHHHHhc-CCCCCHhHHHHHH-HHHHhcCCchHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 491 YNMIRQM-NIKPTASLWSAIL-GACSIYGNTSLGELAARNLFDMEP----EKSVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 491 ~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
.++++.+ ..-|+...|.... +.+...|+.+.|++.++++..... -....+.-+++++..+++|++|.+.+..+.
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 9999999 5567766664443 567789999999999998885332 345568889999999999999999999998
Q ss_pred hc
Q 038522 565 ER 566 (590)
Q Consensus 565 ~~ 566 (590)
+.
T Consensus 333 ~~ 334 (468)
T PF10300_consen 333 KE 334 (468)
T ss_pred hc
Confidence 74
No 277
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=7.4 Score=40.09 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=37.9
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCch
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTS 520 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 520 (590)
.+..|.+.|-+++-.-++-+|-. +..+|.-.-.+.+++++|.++.++- -|...|..|+..+...-.+-
T Consensus 640 A~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~ 707 (846)
T KOG2066|consen 640 ALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFI 707 (846)
T ss_pred HHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHH
Confidence 34445555555555555544421 1223333334556666777766654 37778888887766544443
Q ss_pred HHH
Q 038522 521 LGE 523 (590)
Q Consensus 521 ~a~ 523 (590)
.++
T Consensus 708 ~~l 710 (846)
T KOG2066|consen 708 KAL 710 (846)
T ss_pred HHH
Confidence 333
No 278
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.06 E-value=4.9 Score=37.06 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=11.2
Q ss_pred HHHHHHhcCChHHHHHHHHhcC
Q 038522 375 LIDMYAKSGEIADANRAFDEMG 396 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~ 396 (590)
-++.+.+.++.+.+.+++.+|.
T Consensus 127 ~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 127 KLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHhccCChhHHHHHHHHHH
Confidence 3444444555555555555554
No 279
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.03 E-value=16 Score=43.01 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=53.6
Q ss_pred HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 503 ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
..+|-...+.+...|+++.|...+-.+.+..+ +..+.-.+..+...|+...|..++++..+.+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 35788888888889999999988888887774 67888889999999999999999999886443
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.01 E-value=0.24 Score=44.52 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 531 (590)
.++..++..+...|+.+.+.+.++++ ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666666666666666666665 3333 555666666666666666666666666553
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.01 E-value=2.9 Score=40.18 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=57.2
Q ss_pred CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEP----EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
....+|..++..+.+.|+++.|...+.++.+.++ ..+.....-+..+...|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4556789999999999999999999999998663 2466777789999999999999999998887433
No 282
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.99 E-value=2.7 Score=33.87 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=54.6
Q ss_pred cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCC
Q 038522 32 TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGY 111 (590)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 111 (590)
....++..+...+........++.+...+ ..++..++.++..|++.+ ..+....++. ..+......+++.|.+.+-
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34566677776777888888888887776 467778888888887653 3334444442 2233344446666666666
Q ss_pred hHHHHHHHHHH
Q 038522 112 DENALLVFSAM 122 (590)
Q Consensus 112 ~~~a~~~~~~m 122 (590)
++++.-++..+
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 66666666554
No 283
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.97 E-value=0.097 Score=29.71 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
.++..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4688999999999999999999999877543
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.82 E-value=4.6 Score=43.61 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHH
Q 038522 315 SKEAFDLFKDMI 326 (590)
Q Consensus 315 ~~~a~~~~~~~~ 326 (590)
+.+=+-+++++.
T Consensus 867 PkEyLP~L~el~ 878 (1265)
T KOG1920|consen 867 PKEYLPFLNELK 878 (1265)
T ss_pred hHHHHHHHHHHh
Confidence 555555555554
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.45 E-value=0.14 Score=29.12 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
.+|..++.+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4789999999999999999999999887543
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.44 E-value=3.4 Score=33.65 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=28.4
Q ss_pred ccCChHHHHHHHHHHHhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHH
Q 038522 447 HTGLTCEGWELFTDMINKYRILPRAEHFS-CVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACS 514 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 514 (590)
..++.+++..+++.+. -+.|...... .-...+.+.|++.+|..+|+++ .-.|....-..|+..|.
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 3445555555555554 2234322111 1122344555555555555555 22333333344444443
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.41 E-value=1.2 Score=37.34 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=11.4
Q ss_pred HHHHhcCCchHHHHHHHHHhcCC
Q 038522 511 GACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
..+...|+-++|+..|+++++..
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHcc
Confidence 34444555555555555555444
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.39 E-value=0.52 Score=38.23 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=59.2
Q ss_pred hhHHHHHHHHH---HhcCChHHHHHHHHhc-CCCCCHhHHHHH-HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 471 AEHFSCVVDLF---ARRGQLESAYNMIRQM-NIKPTASLWSAI-LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 471 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
..+.+.|++.. .+.++.+++..++..+ -..|.......+ ...+...|++.+|+.+++.+.+-.|..+..--.++.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34555565544 5678888888888888 556655444332 345678899999999999988888877777777777
Q ss_pred HHHhcCCh
Q 038522 546 IYTAAGAW 553 (590)
Q Consensus 546 ~~~~~g~~ 553 (590)
++...|+.
T Consensus 87 CL~~~~D~ 94 (160)
T PF09613_consen 87 CLYALGDP 94 (160)
T ss_pred HHHHcCCh
Confidence 77777764
No 289
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=3.3 Score=36.12 Aligned_cols=174 Identities=9% Similarity=0.016 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc
Q 038522 372 GNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT 448 (590)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 448 (590)
|..-..+|....++++|...+.+.. +.|...|.+ .+.++.|.-+.++|.+. +.-...|..-...|...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence 3344445556666666666555443 122222221 12334555555555541 22233455555667777
Q ss_pred CChHHHHHHHHHHHhhc-CCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHH
Q 038522 449 GLTCEGWELFTDMINKY-RILPRA--EHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELA 525 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 525 (590)
|.++.|-..+++.-+.. +++|+. ..|..-+......++...|.++ +....+.+.+.+.+++|-..
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------------~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------------YGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH------------HHHhhhHhhhhHHhhHHHHH
Confidence 77777766666554321 233331 1222222222223333333333 33344556667777776665
Q ss_pred HHHHh------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 526 ARNLF------DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 526 ~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
+.+-. ...|..-..+...+.+|....++..|.+.++.-.+.
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 55543 222433445777777788888999999998875443
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.05 E-value=16 Score=39.86 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=25.4
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 038522 180 GWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRAS 242 (590)
Q Consensus 180 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 242 (590)
+++++|+.-+.++. ...|.-.++.--+.|.+.+|+.++ +|+...+..+..+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~y 945 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAY 945 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHH
Confidence 34455554444433 223333333334455555555554 56766666555443
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.98 E-value=5.3 Score=34.18 Aligned_cols=160 Identities=15% Similarity=0.097 Sum_probs=88.1
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522 400 VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV 478 (590)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 478 (590)
+..||-|.--+...|+++.|.+.|+...+. .|. ..+...-.-++.-.|++.-|.+-+...-......|=...|-.++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 346777777777888888888888888774 442 22222222234456788888776666654312222222232222
Q ss_pred HHHHhcCChHHHHHHHHh-c-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-------cchHHHHHHHHHh
Q 038522 479 DLFARRGQLESAYNMIRQ-M-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-------SVNYVVLSNIYTA 549 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 549 (590)
-+.-++.+|..-+.+ . +...+...|+.+ .+. .|+.. .+.+++++..-..++ ..+|..|+.-|..
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV--~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIV--EFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHH--HHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 234466676555433 3 433333333322 221 12221 122333333322222 4568889999999
Q ss_pred cCChHHHHHHHHHhhhcCC
Q 038522 550 AGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 550 ~g~~~~A~~~~~~~~~~~~ 568 (590)
.|+.++|..+|+.....++
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 9999999999987766544
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.82 E-value=0.64 Score=37.00 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=48.7
Q ss_pred hHHHHHHHHH---HhcCChHHHHHHHHhc-CCCCCHhHHHH-HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522 472 EHFSCVVDLF---ARRGQLESAYNMIRQM-NIKPTASLWSA-ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI 546 (590)
Q Consensus 472 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 546 (590)
...+.|++.. ...++++++..++..+ -+.|+...... -...+...|++++|..+++.+.+-.|..+..--.++.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3444444433 3467777777777777 44454333222 22345577777777777777777776555555566666
Q ss_pred HHhcCCh
Q 038522 547 YTAAGAW 553 (590)
Q Consensus 547 ~~~~g~~ 553 (590)
+...|+.
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 6666653
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.65 E-value=0.18 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 539 NYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
++..++.+|...|++++|.+.++++.+.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 35567777777777777777777776654
No 294
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.54 E-value=0.14 Score=29.01 Aligned_cols=29 Identities=7% Similarity=0.082 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 506 WSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
|..+...|...|++++|...++++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33344444444444444444444444444
No 295
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.52 E-value=3.3 Score=38.33 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHcCCCCCh--hhHHHHHHHhccCCC--hhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 038522 214 DDSFWLFRSMMRQGMKPDC--FTLGSILRASVGGIE--LMKISQIHDLIIKLGLESSNKLTGSLIDV 276 (590)
Q Consensus 214 ~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 276 (590)
+.+..+|+.+.+.|+..+. ...+.++..+..... ...+..+++.+.+.|+++....|..+.-.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 4566677777777765533 334444444333322 34677778888888888777776655433
No 296
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.42 E-value=0.28 Score=44.48 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=74.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHHHHHHHHhcC
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSAILGACSIYG 517 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~ 517 (590)
-.+-|.++|.+++|+.-|.... .+.| +..++..-..+|.+.+++..|..-...+ .+. .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999998887 4456 7777777788899999888887766655 211 11234444444445668
Q ss_pred CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 038522 518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNAR 557 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 557 (590)
+..+|.+-++.++++.|++.. |-..|..-....|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 889999999999999996433 333344444444443
No 297
>PRK09687 putative lyase; Provisional
Probab=92.39 E-value=8.9 Score=35.29 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHhhccCC
Q 038522 434 NDVTFLSLLFACSHTGL 450 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~ 450 (590)
+...-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 44444444444444444
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.35 E-value=0.2 Score=26.43 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~ 561 (590)
.+...++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988875
No 299
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.30 E-value=0.15 Score=29.55 Aligned_cols=26 Identities=4% Similarity=-0.144 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
+|..|...|.+.|++++|++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777754
No 300
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.71 E-value=11 Score=34.92 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCC--hHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522 417 HEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGL--TCEGWELFTDMINKYRILPRAEHFSCVVDL 480 (590)
Q Consensus 417 ~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (590)
+.+..+|+.+.+.|+..+ ......++..+..... ...+.++++.+.+. ++++....|..+.-.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 456777888888787773 2444444443333222 34777888888887 888877776655443
No 301
>PRK12798 chemotaxis protein; Reviewed
Probab=91.38 E-value=14 Score=35.43 Aligned_cols=185 Identities=18% Similarity=0.244 Sum_probs=120.7
Q ss_pred cCChHHHHHHHHhcCC----CCcchHHHHHHHHH-hcCCchHHHHHHHHHHHcCCCCcH----HHHHHHHHHhhccCChH
Q 038522 382 SGEIADANRAFDEMGD----KNVISWTSLIAGYA-KHGYGHEAIELYKKMKHEGMVPND----VTFLSLLFACSHTGLTC 452 (590)
Q Consensus 382 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~ 452 (590)
.|+.++|.+.+..+.. +....|-.|+.+-. ...++..|+.+|+...-. .|-. .....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5899999999998873 34456777776544 456899999999988753 5633 23344444567889999
Q ss_pred HHHHHHHHHHhhcCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522 453 EGWELFTDMINKYRILPRAEHFS-CVVDLFARRG---QLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARN 528 (590)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 528 (590)
++..+-.....+|...|-...|. .+...+.+.+ ..+.-..++..|.-.--...|-.+.+.....|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777777665555544333 3333444433 3344455555553222345788888888899999999999999
Q ss_pred HhcCCCCCcchHHHHHHHH-----HhcCChHHHHHHHHHhhhcCCc
Q 038522 529 LFDMEPEKSVNYVVLSNIY-----TAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 529 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
+..+.+ ....-...+..| .-..++++|.+.+..+-...+.
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 997764 222222233333 3446788888888777555443
No 302
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.11 E-value=7.8 Score=32.07 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=24.4
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 254 IHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRS 292 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 292 (590)
+++-+.+.+++|+...+..+++.+.+.|++.....++.-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 444445566777777777777777777666555555443
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=10 Score=33.01 Aligned_cols=17 Identities=6% Similarity=-0.246 Sum_probs=10.6
Q ss_pred hcCCchHHHHHHHHHhc
Q 038522 515 IYGNTSLGELAARNLFD 531 (590)
Q Consensus 515 ~~~~~~~a~~~~~~~~~ 531 (590)
..+++.+|+.+|+++..
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666654
No 304
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.87 E-value=0.44 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998876
No 305
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.80 E-value=18 Score=35.58 Aligned_cols=175 Identities=10% Similarity=0.100 Sum_probs=111.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMG--DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 445 (590)
|.....+++..++...+..-...+..+|. ..+...|..++.+|... ..++-..+|+++.+. ..|......-+..+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 44455566777777666666666666665 34566777888888877 567788888888875 33433333333334
Q ss_pred hccCChHHHHHHHHHHHhhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCCHhHHHHHHHHHHh
Q 038522 446 SHTGLTCEGWELFTDMINKYRILPR------AEHFSCVVDLFARRGQLESAYNMIRQM----NIKPTASLWSAILGACSI 515 (590)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 515 (590)
...++.+.+..+|.++..+ +.|. ...|..+... -..+.+..+.+..+. |..--...+..+..-|..
T Consensus 142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4447778888888877764 2221 2234444332 134566666666655 333334455556667778
Q ss_pred cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 516 YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
..++++|++++..+++.+..|..+...+..-+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 8889999999998888888777776666655443
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.49 E-value=0.37 Score=27.43 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCChHHHH
Q 038522 53 HAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR 85 (590)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 85 (590)
++..++.. |.++..|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34455554 567788888888888888888775
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.38 E-value=9 Score=31.57 Aligned_cols=118 Identities=11% Similarity=0.071 Sum_probs=72.4
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCcHHH-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH-----HHHHhc
Q 038522 411 AKHGYGHEAIELYKKMKHEGMVPNDVT-FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV-----DLFARR 484 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~ 484 (590)
.+.+..++|+.-|..+.+.|...-+.. ...........|+-..|...|+++-.. .|.+....-+. -.+...
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhcc
Confidence 456677888888888877664432221 122233455677888888888888754 22222222221 234567
Q ss_pred CChHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522 485 GQLESAYNMIRQM---NIKPTASLWSAILGACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 485 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 531 (590)
|-++....-.+-+ +.+-....-..|.-+..+.|++.+|...|+.+..
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7788877777776 2122233446666677788888888888888875
No 308
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.34 E-value=3 Score=35.11 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=63.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCc-----HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHH
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPN-----DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDL 480 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 480 (590)
..-+...|++++|..-|.+.+.. ++|. ...|..-..++.+.+.++.|+.-..+.++ +.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 34577889999999999998885 3332 23344444567788888888888777774 3443 2233333457
Q ss_pred HHhcCChHHHHHHHHhc-CCCCCH
Q 038522 481 FARRGQLESAYNMIRQM-NIKPTA 503 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~-~~~p~~ 503 (590)
|-+..++++|++-|+++ ...|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 77888899999888887 555543
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.33 E-value=3.1 Score=33.23 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=48.6
Q ss_pred HHHHHHHHH---hhccCChHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHH
Q 038522 436 VTFLSLLFA---CSHTGLTCEGWELFTDMINKYRILPR---AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSA 508 (590)
Q Consensus 436 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 508 (590)
...+.|++. -...++.+++..+++.+. -+.|+ ..++.. ..+...|++.+|..+|++. +-.+....-..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 344444443 345789999999999998 44565 444444 4467899999999999999 33334333344
Q ss_pred HHHHHH
Q 038522 509 ILGACS 514 (590)
Q Consensus 509 l~~~~~ 514 (590)
|...|.
T Consensus 83 L~A~CL 88 (153)
T TIGR02561 83 LLALCL 88 (153)
T ss_pred HHHHHH
Confidence 444444
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.02 E-value=3.2 Score=37.61 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (590)
+..++..+...|+.+.+.+.++++... .| +...|..++.+|...|+...|+..|+.+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444555555555555555555543 23 455555555555555555555555555443
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.01 E-value=0.68 Score=26.11 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998763
No 312
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.95 E-value=0.63 Score=28.32 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 541 VVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 541 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
..|+.+|...|+.+.|+++++++.+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999988644
No 313
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.74 E-value=24 Score=35.47 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=50.3
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-cCChHHHHHHhccCCC------CCccchHHHHHHH
Q 038522 34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAK-VGDVLSARKAFDRMPE------RNVVSWTAMISGY 106 (590)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~------~~~~~~~~li~~~ 106 (590)
......-.+.|..+.+.++|++-+.. ++.+...|......+.. .|+.+...+.|+.... ....-|...|.--
T Consensus 83 ~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e 161 (577)
T KOG1258|consen 83 KKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE 161 (577)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence 44444445566666666666666653 45555565555544332 3555555555555443 2334455556555
Q ss_pred HhcCChHHHHHHHHHHHH
Q 038522 107 AQNGYDENALLVFSAMLR 124 (590)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~ 124 (590)
..++++.....++++.++
T Consensus 162 n~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 162 NGQKSWKRVANIYERILE 179 (577)
T ss_pred hccccHHHHHHHHHHHHh
Confidence 566666666666666665
No 314
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.65 E-value=0.9 Score=33.11 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=24.5
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCC
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDMEP--EKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~ 552 (590)
|......+...+...|+++.|++.+-.+++.+| .+..+-..|+.++...|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 334444555555555666666665555555554 224444455555555554
No 315
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.36 E-value=1.4 Score=38.09 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=57.9
Q ss_pred cCChHHHHHHHHhc-CCCCCHhHH-HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522 484 RGQLESAYNMIRQM-NIKPTASLW-SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 484 ~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (590)
..++..|..-+.+. -+.|+..+| ..=+..+.+..+++.+..--++++++.|+.....+.++.+......+++|+..++
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 44556666666555 556666444 3344455667788888888888888888777888888888888888888888887
Q ss_pred Hhhh
Q 038522 562 LMEE 565 (590)
Q Consensus 562 ~~~~ 565 (590)
+..+
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 7743
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.32 E-value=1.2 Score=40.54 Aligned_cols=87 Identities=22% Similarity=0.210 Sum_probs=63.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc-
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR- 484 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 484 (590)
..-|.++|.+++|+..|.+... +.| |++++..-..+|.+...+..|..-......- | ...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 4578999999999999998876 467 9999999999999999998888777666532 1 2344555554
Q ss_pred ------CChHHHHHHHHhc-CCCCCHh
Q 038522 485 ------GQLESAYNMIRQM-NIKPTAS 504 (590)
Q Consensus 485 ------g~~~~A~~~~~~~-~~~p~~~ 504 (590)
|+..+|.+-++.. .+.|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 5556665555555 6677643
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.24 E-value=0.65 Score=38.34 Aligned_cols=107 Identities=11% Similarity=0.043 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHH-------Hhc-CCCCCH-hHHHHHHHHHHhcC-
Q 038522 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARR---GQLESAYNMI-------RQM-NIKPTA-SLWSAILGACSIYG- 517 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~-------~~~-~~~p~~-~~~~~l~~~~~~~~- 517 (590)
++.|.+..+..... -+.|...++....++... ....++.+++ +++ .+.|+. .++..+..++...+
T Consensus 7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 45555555554433 133455544444443332 2223333333 332 445543 45555555554322
Q ss_pred ----------CchHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHhhhcC
Q 038522 518 ----------NTSLGELAARNLFDMEPEKSVNYVVLSNIYTA-AGAWDNARKTRKLMEERS 567 (590)
Q Consensus 518 ----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 567 (590)
-+++|...|+++...+|.+ ..|.+ ......|-++..++.+.+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQG 137 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1445555555555666633 12322 234445555555555544
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.09 E-value=0.96 Score=38.47 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK 536 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 536 (590)
+.+.-+..+.+.+.+++|+...++- ..+| |...-..+++.++-.|++++|...++-+-++.|+.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3445567778888888888888766 4455 45566777788888999999999998888888854
No 319
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.89 E-value=7.5 Score=28.55 Aligned_cols=89 Identities=16% Similarity=0.158 Sum_probs=63.1
Q ss_pred cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 038522 44 KAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAML 123 (590)
Q Consensus 44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 123 (590)
...++|..|-+.+...+- ....+-..-+..+..+|++++|..+.+.+.-||...|-+|-. .+.|-.+.+..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 356788888888776542 233333334456778999999999999998899999987766 46677777777777787
Q ss_pred HcCCCCCHhhHHH
Q 038522 124 RSGVRANQFTYSS 136 (590)
Q Consensus 124 ~~~~~p~~~~~~~ 136 (590)
..| .|....|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 766 455555543
No 320
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.76 E-value=14 Score=31.33 Aligned_cols=89 Identities=10% Similarity=0.001 Sum_probs=53.8
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCCHhHHH-----HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522 478 VDLFARRGQLESAYNMIRQMNIKPTASLWS-----AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 552 (590)
...+..+|++++|...++..--.|....+. .|.+.....|.++.|+..+....+..= .+..-..-+.++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc
Confidence 345566667777766666541122222222 233445567777777777665443322 22335556788888888
Q ss_pred hHHHHHHHHHhhhcC
Q 038522 553 WDNARKTRKLMEERS 567 (590)
Q Consensus 553 ~~~A~~~~~~~~~~~ 567 (590)
.++|+.-|++..+.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888887766
No 321
>PRK10941 hypothetical protein; Provisional
Probab=88.58 E-value=1.8 Score=39.16 Aligned_cols=62 Identities=16% Similarity=0.097 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+.+-.+|.+.++++.|+...+.++.+.|+++.-+.-.+.+|.+.|.+..|..-++...+..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 44555666777777777777777777777777777777777777777777777776665543
No 322
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.54 E-value=0.57 Score=26.13 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
-.+..++.+.|++++|.+.++++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34566777788888888888888888874
No 323
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.50 E-value=3.9 Score=30.16 Aligned_cols=60 Identities=13% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522 418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD 479 (590)
Q Consensus 418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 479 (590)
+..+-++.+....+.|++......+.+|.+.+++..|..+++.++.+-+. ....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 55666777777788999999999999999999999999999999876432 3337776664
No 324
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.27 E-value=7.5 Score=32.81 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMGDKNV------ISWTSLIAGYAKHGYGHEAIELYKKMKH 428 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 428 (590)
.+..+.+.|.+.|+.+.|.+.|.++.+... ..+-.+++...-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666666666666666666654221 2344555556666666666666655543
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.04 E-value=4.2 Score=29.61 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522 416 GHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD 479 (590)
Q Consensus 416 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 479 (590)
.-++.+-++.+....+.|++....+.+.+|.+.+++..|..+++.++.+-+. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3456667777777788999999999999999999999999999988865232 4446666553
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.81 E-value=8.5 Score=32.50 Aligned_cols=96 Identities=14% Similarity=0.060 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH--HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHH--HH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND--VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFS--CV 477 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 477 (590)
.+..+..-|.+.|+.+.|++.|.++.+....|.. ..+-.++......+++..+...+.+.........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5667788889999999999999998887555543 3456677778888888888888777765421111111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHhc
Q 038522 478 VD--LFARRGQLESAYNMIRQM 497 (590)
Q Consensus 478 ~~--~~~~~g~~~~A~~~~~~~ 497 (590)
.. .+...+++.+|-+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 11 234567888887777666
No 327
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.57 E-value=1.7 Score=37.96 Aligned_cols=63 Identities=10% Similarity=0.105 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCch-------HHHHHHHHHhcCC--C----CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 506 WSAILGACSIYGNTS-------LGELAARNLFDME--P----EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 506 ~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+..+.+.|...|+.+ .|.+.|+++.+.. | +.....+.++.++.+.|++++|.++|..+...+-
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 444556666666644 4445555555332 2 2245677889999999999999999999988543
No 328
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.52 E-value=0.23 Score=45.12 Aligned_cols=90 Identities=12% Similarity=0.226 Sum_probs=61.1
Q ss_pred hcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522 483 RRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
..|.+++|++.|... .+.| ....|..-..++.+.+....|+.-+..+++++|+....|-.-+.+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 456667777776665 3333 33334444456667777777777777777888777777777777777778888888777
Q ss_pred HHhhhcCCccCC
Q 038522 561 KLMEERSLRKNP 572 (590)
Q Consensus 561 ~~~~~~~~~~~~ 572 (590)
....+.++.+..
T Consensus 206 ~~a~kld~dE~~ 217 (377)
T KOG1308|consen 206 ALACKLDYDEAN 217 (377)
T ss_pred HHHHhccccHHH
Confidence 777777665543
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=1.8 Score=39.08 Aligned_cols=100 Identities=9% Similarity=0.095 Sum_probs=71.3
Q ss_pred cCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-C------CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 038522 60 GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE-R------NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF 132 (590)
Q Consensus 60 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 132 (590)
|.+.+..+...++..-....+++.++..+-++.. | +... .++++.+. .-+++.++.++..-+.-|+.||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4455566666777666667788888877766654 2 2222 23334333 336778888888888889999999
Q ss_pred hHHHHHHHHhccCchhhHHHHHHHHHhcC
Q 038522 133 TYSSALRACARMRWLQGGRMIQGSIQKGR 161 (590)
Q Consensus 133 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 161 (590)
+++.+|..+.+.+++.+|.++.-.|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999988888877776653
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.30 E-value=5.1 Score=34.07 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=52.3
Q ss_pred hcCChHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHH
Q 038522 483 RRGQLESAYNMIRQMNIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEP----EKSVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A 556 (590)
+.|+ ++|++.|-.+.-.| +....-..+..|....+.+++++++.+++++.+ .|+..+.+|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 77888887772123 223333344455567899999999999996543 3688899999999999999887
Q ss_pred H
Q 038522 557 R 557 (590)
Q Consensus 557 ~ 557 (590)
=
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 3
No 331
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.09 E-value=0.59 Score=37.95 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 038522 137 ALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDS 216 (590)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 216 (590)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455556666666677777777665556667777777777777776777777663322 3334455555555555555
Q ss_pred HHHHHHH
Q 038522 217 FWLFRSM 223 (590)
Q Consensus 217 ~~~~~~m 223 (590)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555443
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.06 E-value=0.69 Score=37.52 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=63.3
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 038522 35 SLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDEN 114 (590)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 114 (590)
.++..+.+.+.+.....+++.+...+...+...++.++..|++.++.+...++++.... .-...+++.|.+.|-+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777888888889999998877667788999999999999888888888884333 444566777777777777
Q ss_pred HHHHHHHHH
Q 038522 115 ALLVFSAML 123 (590)
Q Consensus 115 a~~~~~~m~ 123 (590)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777666643
No 333
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.99 E-value=43 Score=35.16 Aligned_cols=177 Identities=10% Similarity=-0.022 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC--CCcchHH-HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMGD--KNVISWT-SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 447 (590)
....-+..-.+.++++.+...+..|.. .+...|. =+.+++...|+.++|...|+++.. .. +|..++.+ .+
T Consensus 314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~ 386 (644)
T PRK11619 314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QR 386 (644)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HH
Confidence 334444444566777777777777652 1111111 134454556777777777777632 11 23222211 11
Q ss_pred cCChHH-HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHH
Q 038522 448 TGLTCE-GWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAA 526 (590)
Q Consensus 448 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 526 (590)
.|..-. .......-... +. . ..--.-+..+...|+...|...+..+....+......+.......|.++.++...
T Consensus 387 Lg~~~~~~~~~~~~~~~~--~~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~ 462 (644)
T PRK11619 387 LGEEYPLKIDKAPKPDSA--LT-Q-GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQAT 462 (644)
T ss_pred cCCCCCCCCCCCCchhhh--hc-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 121100 00000000000 00 0 0011234456677888888888877722345555666666667888888888777
Q ss_pred HHHhcCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 038522 527 RNLFDMEP---EKSVNYVVLSNIYTAAGAWDNARK 558 (590)
Q Consensus 527 ~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~ 558 (590)
.+....+. .-|..|...+..+...-..+.+.-
T Consensus 463 ~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv 497 (644)
T PRK11619 463 IAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYA 497 (644)
T ss_pred hhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHH
Confidence 65432110 113345555555555555555543
No 334
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=86.80 E-value=26 Score=32.33 Aligned_cols=66 Identities=8% Similarity=0.082 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhccCC---CccchHHHHHHH---HhcCCChHHHHHHHHHHHHcCCCCCH
Q 038522 267 NKLTGSLIDVYAKYGSIRSAYQLYRSMLKT---DIISCTALISGF---ARDDNHSKEAFDLFKDMILKKMGIDD 334 (590)
Q Consensus 267 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~---~~~~~~~~~a~~~~~~~~~~~~~p~~ 334 (590)
+.++..-+..+.+.++.+.+.+++.+|... ....+...+..+ .... ...+...+..++...+.|..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~--~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKS--PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhC--cHHHHHHHHHHHHHHhCCCh
Confidence 334434455555566666666666666322 122333333332 2222 34555555555544444443
No 335
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.50 E-value=6.9 Score=39.02 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=21.9
Q ss_pred ccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 447 HTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|.+.
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 4455555555443332 2334555555555555555555555443
No 336
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.49 E-value=4.3 Score=35.39 Aligned_cols=57 Identities=9% Similarity=-0.084 Sum_probs=37.8
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
+.+...|++-++++....++...|.|..+|..-+.+.+..=+.++|..-|....+..
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 334456677777777777777777777777777777766666666766666665543
No 337
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.43 E-value=24 Score=31.73 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=20.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522 204 IGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL 235 (590)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 235 (590)
.+-..+.+++++|+..+.+....|+..|..+.
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~ 41 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL 41 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence 34455666777777777777777766655443
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.37 E-value=1.3 Score=23.95 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=14.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 539 NYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+..++.++...|++++|...++...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555555555555555555443
No 339
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.34 E-value=83 Score=37.75 Aligned_cols=160 Identities=11% Similarity=-0.045 Sum_probs=89.9
Q ss_pred HHHHHhccCchhhHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHhc-cCCCCcchHHHHHHHHHhcCCc
Q 038522 137 ALRACARMRWLQGGRMIQGSIQKGRF--VENLFVKSALLDLYAKCGWIEDAWILFER-IERKDVVSWNAMIGGLAMQGFN 213 (590)
Q Consensus 137 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~ 213 (590)
+..+-.+.+.+..|...++.-..... ......+-.+...|+.-+++|....+... ...++ ...-|-.....|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence 33344566777777777776311111 12233444555588888888877776663 33332 23344556678889
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHh
Q 038522 214 DDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKL-TGSLIDVYAKYGSIRSAYQLYRS 292 (590)
Q Consensus 214 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~ 292 (590)
..|...|+.+.+.+ ++...+++.++......|.++...-..+-..... .+.... ++.=+.+--+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999988764 3346677777777666776666555433332221 122211 2222333356666666666554
Q ss_pred ccCCCccchHHH
Q 038522 293 MLKTDIISCTAL 304 (590)
Q Consensus 293 ~~~~~~~~~~~l 304 (590)
..+..+|...
T Consensus 1543 --~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE 1552 (2382)
T ss_pred --cccccchhHH
Confidence 4455555554
No 340
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.09 E-value=1.9 Score=27.60 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNY 540 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 540 (590)
.+.-++.+.|+++.|....+.+++++|+|..+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455677788888888888888888888665543
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.37 E-value=51 Score=34.45 Aligned_cols=171 Identities=11% Similarity=0.022 Sum_probs=89.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 038522 102 MISGYAQNGYDENALLVFSAMLRSGVRA---NQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAK 178 (590)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (590)
-|+-+.+.+.+++|+...+.... ..| -.......|..+...|++++|-...-.|... +..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 46667788888888888776543 333 3345666677777777887777766666443 23333333333444
Q ss_pred cCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHH
Q 038522 179 CGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDL 257 (590)
Q Consensus 179 ~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 257 (590)
.++....-.++-.-.. -+...|..++..++. .+ ..-|.+.+.. .+++...-..++++- .. +
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~--~~----------q 497 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISAT--EP----------Q 497 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhc--ch----------H
Confidence 4443322222211111 144567777776665 11 2222222221 133333222222221 11 1
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc
Q 038522 258 IIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI 298 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 298 (590)
+.+. ..+...-..|+..|...+++.+|..++-.+.+++.
T Consensus 498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1111 12223334488889999999999999888766544
No 342
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=85.27 E-value=0.75 Score=44.12 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=42.1
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCCch
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCV-VDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGNTS 520 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~ 520 (590)
.....+.++.|..++.++++ +.|+...|-+. ..++.+.+++..|+.=+.++ ...|.. ..|-.=..+|...+++.
T Consensus 13 ~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34444555556655555553 24443222221 24445555555555444443 333321 22222223344445555
Q ss_pred HHHHHHHHHhcCCCCCcch
Q 038522 521 LGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~ 539 (590)
+|+..++....+.|+++.+
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHhhhcCcCcHHH
Confidence 5555555555555544443
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.08 E-value=1.7 Score=23.47 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
..|..+...+...|+++.|...++++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567778888899999999999999998887
No 344
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.07 E-value=13 Score=34.07 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCCC
Q 038522 521 LGELAARNLFDMEPE 535 (590)
Q Consensus 521 ~a~~~~~~~~~~~p~ 535 (590)
.|.+...++.+.+|.
T Consensus 380 ~AvEAihRAvEFNPH 394 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPH 394 (556)
T ss_pred HHHHHHHHHhhcCCC
Confidence 466677777787774
No 345
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.90 E-value=25 Score=30.39 Aligned_cols=159 Identities=12% Similarity=-0.016 Sum_probs=86.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcc-hHHHHHH--HHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVI-SWTSLIA--GYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 444 (590)
-+.+||-+.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.-.|++.-|.+-+.+.-+. .|+..--...+-.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~--D~~DPfR~LWLYl 175 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD--DPNDPFRSLWLYL 175 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc--CCCChHHHHHHHH
Confidence 3667788888888899999999999988865543 3333322 233467888887777666654 2322111111111
Q ss_pred hhccCChHHHHHH-HHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCCCCC-------HhHHHHHHHHHHh
Q 038522 445 CSHTGLTCEGWEL-FTDMINKYRILPRAEHFSCVVDLFAR-RGQLESAYNMIRQMNIKPT-------ASLWSAILGACSI 515 (590)
Q Consensus 445 ~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~ 515 (590)
-...-++.+|..- .++.. ..+..-|...|-.|.- .=..+.+.+-...- ...+ ..+|--+.+-+..
T Consensus 176 ~E~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 176 NEQKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYLGKISEETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHhhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHHhhccHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence 1233455565543 33333 2244444443333221 11112222222111 1111 2356666777788
Q ss_pred cCCchHHHHHHHHHhcCCC
Q 038522 516 YGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~p 534 (590)
.|+.+.|..+++-++..+.
T Consensus 250 ~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 250 LGDLDEATALFKLAVANNV 268 (297)
T ss_pred cccHHHHHHHHHHHHHHhH
Confidence 8999999999988886654
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.89 E-value=3.4 Score=37.04 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
++......|...|.+.+|.++-+++++++|-+...+-.|...|+..|+--.|.+.++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3455667888999999999999999999999999999999999999998888888887754
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.50 E-value=8.5 Score=28.12 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHH
Q 038522 316 KEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK 362 (590)
Q Consensus 316 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 362 (590)
=++.+-++.+....+.|++....+.+++|.+.+++..|.++++....
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34555666666667788888888888888888888888888887663
No 348
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=13 Score=33.91 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=70.7
Q ss_pred hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCc-----chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHH
Q 038522 363 YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-KNV-----ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDV 436 (590)
Q Consensus 363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 436 (590)
.|.+.+..+...++..-....+++++...+-++.. |+. .+-.+.++.+. .-++++++.++..=++-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 34444444555555555566778888887777763 221 11222333333 336779999999888999999999
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINK 464 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (590)
+++.+++.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999998887777654
No 349
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.11 E-value=63 Score=34.45 Aligned_cols=217 Identities=14% Similarity=0.029 Sum_probs=117.9
Q ss_pred HhchhhhHhHHHHHHHHHHhCCCcch-------hHHHHHHH-HHHhcCChHHHHHHHHhcCC--------CCcchHHHHH
Q 038522 344 CANVASLNLGRQIHAFAFKYQSSYDA-------AVGNALID-MYAKSGEIADANRAFDEMGD--------KNVISWTSLI 407 (590)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~ 407 (590)
.....++.+|..+...+...-..|+. ..++.+-. .....|+++.|.++-+...+ +.+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34566777777777776554333221 12222222 22346888888887776542 3556777788
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHH---HH--HHHhhccCC--hHHHHHHHHHHHhhcCCC-C----ChhHHH
Q 038522 408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL---SL--LFACSHTGL--TCEGWELFTDMINKYRIL-P----RAEHFS 475 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l--l~~~~~~~~--~~~a~~~~~~~~~~~~~~-~----~~~~~~ 475 (590)
.+..-.|++++|..+.++..+..-.-+...+. .+ ...+...|. +.+....+......+... | -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999988887766532222332222 22 233556673 334444444444332111 1 123344
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-----CCCCCH--hHH--HHHHHHHHhcCCchHHHHHHHHHhcCCCCC--cchHH---
Q 038522 476 CVVDLFARRGQLESAYNMIRQM-----NIKPTA--SLW--SAILGACSIYGNTSLGELAARNLFDMEPEK--SVNYV--- 541 (590)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~--~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~--- 541 (590)
.+..++.+ ++.+..-.... ...|.+ ... ..++......|+.++|...+.++..+.-.+ ...|.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44445544 44433333222 222322 222 256677788999999999999888543211 22222
Q ss_pred HHHH--HHHhcCChHHHHHHHHHh
Q 038522 542 VLSN--IYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 542 ~l~~--~~~~~g~~~~A~~~~~~~ 563 (590)
..+. .-..+|+.++|...+.+-
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222 233679999998888763
No 350
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.50 E-value=19 Score=26.68 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=36.3
Q ss_pred HHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522 489 SAYNMIRQM---NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS 544 (590)
Q Consensus 489 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 544 (590)
+..+-+..+ .+-|++....+.+++|.+.+++..|+.+++-+...-.+....|..+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 334444443 77899999999999999999999999999988854443333555543
No 351
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=81.25 E-value=53 Score=31.59 Aligned_cols=56 Identities=7% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHhhh
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPE-KSVNYVVLSNIYT-AAGAWDNARKTRKLMEE 565 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 565 (590)
+....+.|-+..|.+..+-++.++|. ||......+..|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34566788888888888888888886 7777777777666 66777777777776544
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.10 E-value=12 Score=32.00 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhc--CCCCChhHHHHHHHHHHhcCChHHH
Q 038522 417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKY--RILPRAEHFSCVVDLFARRGQLESA 490 (590)
Q Consensus 417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 490 (590)
+.|.+.|-++...+.--++.....|..-| ...+.+++..++-+..+-. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45555555555544333333333333333 3445556666555554432 1134455555555555555555554
No 353
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.93 E-value=31 Score=33.60 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=87.4
Q ss_pred HHHHHhcCCchHHHHHHHH-HHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522 407 IAGYAKHGYGHEAIELYKK-MKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG 485 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (590)
|.--...|+...|.+-+.. +....-.|+...... ......|+++.+.+.+....+ -+.....+...+++.....|
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~ 371 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA 371 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence 3334456777776554444 444333445444433 346778999999998888774 23445677888888999999
Q ss_pred ChHHHHHHHHhc-C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522 486 QLESAYNMIRQM-N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV 541 (590)
Q Consensus 486 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 541 (590)
++++|...-..| + .-.++.............|-++++...|++++.++|+....+.
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 999999998888 3 2234444444444455678889999999999999875444333
No 354
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.62 E-value=12 Score=34.43 Aligned_cols=89 Identities=11% Similarity=0.055 Sum_probs=70.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc----CCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 475 SCVVDLFARRGQLESAYNMIRQM----NIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
.-=.+-|.+.+++..|...|.+. --.| +...|+.-..+....|++..++.-..+++..+|.+..+|..=+.++.
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL 164 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence 33345678888999999999876 1133 33456555556667899999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHh
Q 038522 549 AAGAWDNARKTRKLM 563 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~ 563 (590)
...++++|..+.++.
T Consensus 165 eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 165 ELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999988888877764
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.37 E-value=7.4 Score=30.52 Aligned_cols=70 Identities=9% Similarity=0.034 Sum_probs=38.8
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhc-C-CCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 468 LPRAEHFSCVVDLFARRGQ---LESAYNMIRQM-N-IKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
.++..+--.+..++.+..+ ..+.+.++++. . -+|+ .....-|.-++.+.++++.+++..+.+++.+|+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 3444444455555555543 33455566555 2 2332 23334445566677777777777777777777443
No 356
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.13 E-value=3.1 Score=24.60 Aligned_cols=27 Identities=11% Similarity=-0.008 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
.+++.+...|...|++++|+.++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777778888888888888888776
No 357
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=79.78 E-value=25 Score=26.95 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHh-------cCCCCCcchH----HHHHHHHHhcCChHHHHHHHHHh
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLF-------DMEPEKSVNY----VVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
..+..|..++...|++++++...++++ +++.+....| .+-+.++-..|+.++|.+.|+..
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345556666667777777666666665 4444433333 34556777889999999888764
No 358
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.48 E-value=6.7 Score=38.93 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=69.4
Q ss_pred ccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHH
Q 038522 447 HTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 522 (590)
..|+...|.+-+.... ...|- ....-.|...+.+.|-.-.|-.++.+. .+ ...+.++..+.+++....++++|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4577788887777665 33443 233445666667777777777777655 22 33456777788888888899999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
++.++++.++.|+++..-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999988888777765444
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.06 E-value=23 Score=26.14 Aligned_cols=85 Identities=16% Similarity=0.092 Sum_probs=52.4
Q ss_pred hhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 038522 147 LQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQ 226 (590)
Q Consensus 147 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (590)
.++|..+-+.+...+-. ...+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|..+....-+..|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44555555554443311 33333344566778888888888888888888888776644 3566666666666667666
Q ss_pred CCCCChhhH
Q 038522 227 GMKPDCFTL 235 (590)
Q Consensus 227 ~~~p~~~~~ 235 (590)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 5 4444444
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=78.41 E-value=93 Score=32.69 Aligned_cols=15 Identities=20% Similarity=0.158 Sum_probs=8.8
Q ss_pred ccCChHHHHHHhhhC
Q 038522 9 KTGQLKQALKFSLSC 23 (590)
Q Consensus 9 ~~g~~~~a~~~~~~~ 23 (590)
.+.+++.|...+++.
T Consensus 72 eT~n~~~Ae~~L~k~ 86 (608)
T PF10345_consen 72 ETENLDLAETYLEKA 86 (608)
T ss_pred HcCCHHHHHHHHHHH
Confidence 445566666666655
No 361
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=78.23 E-value=72 Score=31.28 Aligned_cols=119 Identities=9% Similarity=0.021 Sum_probs=74.2
Q ss_pred HhccCchhhHH-HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHH
Q 038522 141 CARMRWLQGGR-MIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDS 216 (590)
Q Consensus 141 ~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 216 (590)
....||+-.|. +++..+....-.|+..... .......|+++.+...+..... ....+...+++.....|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 34456666554 4444444443344444333 3345667888888888866553 4556777888888889999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhC
Q 038522 217 FWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLG 262 (590)
Q Consensus 217 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (590)
..+-+-|....+. ++.............|-++++...|+++...+
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9988888766543 22222222223345566778888887776554
No 362
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=78.14 E-value=39 Score=35.02 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=32.5
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
..+.+.|..++-.++++-. ..+.+-.-.+++.+|++..+.+.++.|.
T Consensus 352 ~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred HHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 3456777777777666422 2334445668889999999999998883
No 363
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.96 E-value=36 Score=29.96 Aligned_cols=117 Identities=11% Similarity=-0.030 Sum_probs=71.3
Q ss_pred HHhcCChHHHHHHHHhcC--CCCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHH-HHHHHHHhhccCChHHH
Q 038522 379 YAKSGEIADANRAFDEMG--DKNVI-SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVT-FLSLLFACSHTGLTCEG 454 (590)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a 454 (590)
|....+++.|+..|.+.. .|+.. -|+.-+.++.+.++++.+.+--.+.++ +.||... ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 455567888888777655 46554 455667778888888888877777766 5777554 33444556677778888
Q ss_pred HHHHHHHHhh---cCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 455 WELFTDMINK---YRILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 455 ~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
+..+.+..+. ..+.+.......|..+-...=...+..++.++.
T Consensus 98 I~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 8888877432 133333445555544433333344445555544
No 364
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.89 E-value=95 Score=32.60 Aligned_cols=26 Identities=12% Similarity=0.240 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHh---cCChHHHHHHHHhc
Q 038522 472 EHFSCVVDLFAR---RGQLESAYNMIRQM 497 (590)
Q Consensus 472 ~~~~~l~~~~~~---~g~~~~A~~~~~~~ 497 (590)
..+..||..|.+ ..++.+|++++--+
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li 353 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLI 353 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 445566666654 24666666666555
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.80 E-value=14 Score=30.82 Aligned_cols=49 Identities=16% Similarity=0.376 Sum_probs=27.6
Q ss_pred CCCCC-hhHHHHHHHHHHhcC----C-------hHHHHHHHHhc-CCCCCHhHHHHHHHHHH
Q 038522 466 RILPR-AEHFSCVVDLFARRG----Q-------LESAYNMIRQM-NIKPTASLWSAILGACS 514 (590)
Q Consensus 466 ~~~~~-~~~~~~l~~~~~~~g----~-------~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 514 (590)
.+.|+ ..++..+..+|...+ + +++|.+.|+++ ...|+...|+.-+..+.
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 45676 466777777765543 3 34444455554 57888888877776653
No 366
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.26 E-value=6.2 Score=29.08 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=37.7
Q ss_pred HhcCCchHHHHHHHHHhcCCCC----C-----cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 514 SIYGNTSLGELAARNLFDMEPE----K-----SVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+.|++..|.+.+.+..+.... . ..+...++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678888887777777743321 1 23455678888899999999999998866
No 367
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.01 E-value=59 Score=29.69 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=32.1
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHH
Q 038522 366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAKHGYGHEAIELY 423 (590)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~ 423 (590)
.++..+...+++.++..+++.+-.++++.... .|...|..+|......|+..-...+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34444555556666666666666666655432 35556666666666666654444333
No 368
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.93 E-value=6.1 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=16.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 038522 102 MISGYAQNGYDENALLVFSAMLRSG 126 (590)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m~~~~ 126 (590)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777766543
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=76.91 E-value=16 Score=35.27 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHh--------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 507 SAILGACSIYGNTSLGELAARNLF--------DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~--------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
-.|++.++-.||+..|++.++.+- +.-+-...+++.++-+|...+++.+|++.|..+.-
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666655543 22234667788889999999999999988887743
No 370
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.88 E-value=96 Score=32.06 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-C--ChHHHHHHHHHhhhc
Q 038522 518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA-G--AWDNARKTRKLMEER 566 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~ 566 (590)
+++.|...|.++.... ......++..+-.. | ++..|.++++...+.
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 5666666666666555 45555565555432 1 156677777766553
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.65 E-value=1.1e+02 Score=32.71 Aligned_cols=220 Identities=14% Similarity=0.026 Sum_probs=116.2
Q ss_pred HHhcCChHHHHHHHHhc----cCCCc-------cchHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 038522 277 YAKYGSIRSAYQLYRSM----LKTDI-------ISCTALISGFARDDNHSKEAFDLFKDMILK----KMGIDDVILCLML 341 (590)
Q Consensus 277 ~~~~g~~~~a~~~~~~~----~~~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~ll 341 (590)
.....++++|..++.++ ..++. ..++.+-.......+++++|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 44567888888887776 22222 245555444333333388888888776653 1233445556666
Q ss_pred HHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHH-----HHHHhcCCh--HHHHHHHHhcC-----CCCc-----chHH
Q 038522 342 NICANVASLNLGRQIHAFAFKYQSSYDAAVGNALI-----DMYAKSGEI--ADANRAFDEMG-----DKNV-----ISWT 404 (590)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~--~~A~~~~~~~~-----~~~~-----~~~~ 404 (590)
.+..-.|++++|..+.....+.--..+...+.... ..+...|+. .+....|..+. +... ..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 77777889999998887776653333444333322 234455632 22223333322 1112 2333
Q ss_pred HHHHHHHhc-CCchHHHHHHHHHHHcCCCCcHHH--HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC--Ch--hHHHHH
Q 038522 405 SLIAGYAKH-GYGHEAIELYKKMKHEGMVPNDVT--FLSLLFACSHTGLTCEGWELFTDMINKYRILP--RA--EHFSCV 477 (590)
Q Consensus 405 ~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~--~~~~~l 477 (590)
.++.++.+. +...++..-+.--......|-... +..++......|++++|...++++..- ...+ .+ ..-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHHH
Confidence 344444441 112222222222222222222222 236677788899999999999888765 2222 21 111122
Q ss_pred HH--HHHhcCChHHHHHHHHhc
Q 038522 478 VD--LFARRGQLESAYNMIRQM 497 (590)
Q Consensus 478 ~~--~~~~~g~~~~A~~~~~~~ 497 (590)
+. .....|+.+.+.....+-
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHhc
Confidence 22 235678888888887763
No 372
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.63 E-value=5.3 Score=25.56 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522 539 NYVVLSNIYTAAGAWDNARKTRKLMEERSLRK 570 (590)
Q Consensus 539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (590)
.++.++.++.+.|++++|.+..+.+.+..+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 46788999999999999999999998866543
No 373
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.20 E-value=59 Score=32.71 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=22.5
Q ss_pred HHhcCChHHHHHHHHhc-CCCC--CHhHHHHHHHHHH-hcCCchHHHHHHHHH
Q 038522 481 FARRGQLESAYNMIRQM-NIKP--TASLWSAILGACS-IYGNTSLGELAARNL 529 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 529 (590)
+.+.|.+..|+++.+-+ .+.| |+.....++..|+ +..+|.--+++++..
T Consensus 352 l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 352 LAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455555555555444 3333 2333334443332 444555555555544
No 374
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.62 E-value=30 Score=27.22 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=32.3
Q ss_pred hHHHHHHHHHh--cCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 520 SLGELAARNLF--DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 520 ~~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
+.+.++|+.+. ++.-..+..|...+..+...|++++|.++++.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 37777777776 45556677788888888888888888888874
No 375
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.57 E-value=15 Score=31.73 Aligned_cols=58 Identities=12% Similarity=-0.019 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMI 462 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 462 (590)
.+..++.+.+.+...+++...++-.+. +| |..+-..++..++-.|+|++|..-++-..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344456666677777777777666654 44 44455556666777777777776665554
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.53 E-value=41 Score=27.11 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC---------CCccchHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHhhHHH
Q 038522 67 LSTKVIIFYAKVGDVLSARKAFDRMPE---------RNVVSWTAMISGYAQNGY-DENALLVFSAMLRSGVRANQFTYSS 136 (590)
Q Consensus 67 ~~~~li~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 136 (590)
..+.++.-....+.+...+.+++.+.. .+..+|..++.+...... ---+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666666666777777777766642 355567777777755544 3345677777777777788888888
Q ss_pred HHHHHhcc
Q 038522 137 ALRACARM 144 (590)
Q Consensus 137 ll~~~~~~ 144 (590)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88777654
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.22 E-value=8.9 Score=26.82 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=25.5
Q ss_pred ccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 038522 447 HTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNM 493 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 493 (590)
.....++|+..|....++..-.|+ -.++..++.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655222222 23455566666666666666554
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.21 E-value=41 Score=32.66 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=16.0
Q ss_pred cCCccCCCceEEeecCcccccccCC
Q 038522 566 RSLRKNPGYSFLQSSKKNILLLEPC 590 (590)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (590)
.|++|-....|-++...+++|++-|
T Consensus 355 HGf~~vs~~~~e~l~~~~~~l~~~~ 379 (379)
T PF09670_consen 355 HGFKPVSEEDYEELRDVVEELINRC 379 (379)
T ss_pred cCCCcCCHHHHHHHHHHHHHHHhcC
Confidence 4666666666666666666666666
No 379
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.28 E-value=43 Score=33.83 Aligned_cols=150 Identities=15% Similarity=0.046 Sum_probs=94.8
Q ss_pred cCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 038522 10 TGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFD 89 (590)
Q Consensus 10 ~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (590)
.|+++.|-.++..+ + ...-+.+...+.++|-.++|+++ .+|+... .....+.|+++.|.++..
T Consensus 599 rrd~~~a~~vLp~I---~--k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 599 RRDLEVADGVLPTI---P--KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAV 661 (794)
T ss_pred hccccccccccccC---c--hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHH
Confidence 45555555544332 1 33455666667777777777664 2333221 223356788888887765
Q ss_pred cCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHH
Q 038522 90 RMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVK 169 (590)
Q Consensus 90 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 169 (590)
+.. +..-|..|-++....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|. .|.
T Consensus 662 e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~--- 726 (794)
T KOG0276|consen 662 EAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNL--- 726 (794)
T ss_pred hhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cch---
Confidence 543 456688888998999999999988887654 44566666667776666666666666552 222
Q ss_pred HHHHHHHHhcCChHHHHHHHhccC
Q 038522 170 SALLDLYAKCGWIEDAWILFERIE 193 (590)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~~~ 193 (590)
-.-+|...|+++++.+++.+-.
T Consensus 727 --AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 727 --AFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred --HHHHHHHcCCHHHHHHHHHhcC
Confidence 2234667889999888886653
No 380
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.37 E-value=35 Score=30.84 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHH-------HHHHHhhccCChHHHHHHHH
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL-------SLLFACSHTGLTCEGWELFT 459 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~~ 459 (590)
+.+-..+.+++++|+..+.+....|+..+..+.+ -+...|...|++....++..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 4555667788889999999998888888776643 34455666666655544443
No 381
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.28 E-value=74 Score=29.04 Aligned_cols=57 Identities=4% Similarity=-0.065 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHH
Q 038522 201 NAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLI 258 (590)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 258 (590)
+...+.|..+|.+.+|.++-+.....+ +.+...+-.+++.+...||--.+.+-++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344566777888888888777776553 445666667777777777755555554444
No 382
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=73.07 E-value=4.7 Score=22.07 Aligned_cols=29 Identities=7% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 517 GNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 517 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777776654
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=72.72 E-value=8.7 Score=26.86 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=33.3
Q ss_pred hcCCchHHHHHHHHHhcCCCCCcchHH---HHHHHHHhcCChHHHHHHH
Q 038522 515 IYGNTSLGELAARNLFDMEPEKSVNYV---VLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~~ 560 (590)
..++.++|+..|+++++..++.+.-+. .|..+|...|++.+.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888888888877765554444 4556778888888877653
No 384
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=72.53 E-value=1.3e+02 Score=31.58 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=32.5
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 038522 98 SWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARM 144 (590)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 144 (590)
.-=.+|-.|.|.|++++|.++..+... ........|...+..+...
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 334677888999999999999865543 3556667788888887665
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.49 E-value=1.5e+02 Score=32.24 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC--c-----cchHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHhhHH---
Q 038522 68 STKVIIFYAKVGDVLSARKAFDRMPERN--V-----VSWTAMISGYAQNGYD--ENALLVFSAMLRSGVRANQFTYS--- 135 (590)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~--~-----~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~--- 135 (590)
|..|+..|...|+.++|+++|......+ . ..+..++..+-+.+.. +-.+++-+........-....+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5666666777777777777666655411 1 1223344444444433 33333333333221000000000
Q ss_pred ---------HHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 038522 136 ---------SALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKC 179 (590)
Q Consensus 136 ---------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (590)
..+-.+......+.+..+++.+....-.++....+.++..|++.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 01223455567777777888777766666777777777777653
No 386
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.04 E-value=47 Score=30.05 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=8.4
Q ss_pred HHHHHhcCCchHHHHHHHH
Q 038522 407 IAGYAKHGYGHEAIELYKK 425 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~ 425 (590)
|-.|.+.+.+..+.++-..
T Consensus 125 ILLysKv~Ep~amlev~~~ 143 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASA 143 (309)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 3344444444444444443
No 387
>PRK10941 hypothetical protein; Provisional
Probab=69.84 E-value=25 Score=32.04 Aligned_cols=67 Identities=9% Similarity=0.054 Sum_probs=50.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 476 CVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
.+-.+|.+.++++.|+...+.+ .+.| ++.-+..-.-.|.+.|.+..|..-++..++.-|+++.+-..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3556778888888888888887 4445 44556666677888888888888888888888877766443
No 388
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.66 E-value=6.7 Score=40.98 Aligned_cols=71 Identities=15% Similarity=0.277 Sum_probs=39.3
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGE 523 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 523 (590)
.+.+.|-++-|+.+.+.=..++ .....+|+++.|++.-++.+ +..+|..|......+|+.+-|+
T Consensus 629 YLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaE 692 (1202)
T KOG0292|consen 629 YLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAE 692 (1202)
T ss_pred HHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHH
Confidence 3445555555555544433322 12345666666666665554 4456666666666666666666
Q ss_pred HHHHHHh
Q 038522 524 LAARNLF 530 (590)
Q Consensus 524 ~~~~~~~ 530 (590)
..|++..
T Consensus 693 m~yQ~~k 699 (1202)
T KOG0292|consen 693 MCYQRTK 699 (1202)
T ss_pred HHHHHhh
Confidence 6666544
No 389
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.92 E-value=27 Score=34.98 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=71.0
Q ss_pred hcCChHHHHHHHHhc-CCCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038522 483 RRGQLESAYNMIRQM-NIKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT 559 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 559 (590)
-.|+...|...+..+ ...|- ......|.+...+.|..-.|-.++.+.+.+....|.+++.++++|....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 468999999988887 55553 234455667777888889999999999988888899999999999999999999999
Q ss_pred HHHhhhcCC
Q 038522 560 RKLMEERSL 568 (590)
Q Consensus 560 ~~~~~~~~~ 568 (590)
|+...+...
T Consensus 699 ~~~a~~~~~ 707 (886)
T KOG4507|consen 699 FRQALKLTT 707 (886)
T ss_pred HHHHHhcCC
Confidence 998877544
No 390
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.33 E-value=49 Score=24.92 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=57.9
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHH
Q 038522 43 KKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAM 122 (590)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 122 (590)
....++|..|.+.+...+. ....+--..+..+.++|++++|...=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3467899999999988763 333344444556788999999965555566688888876655 5788888888888888
Q ss_pred HHcCCCCCHhhHH
Q 038522 123 LRSGVRANQFTYS 135 (590)
Q Consensus 123 ~~~~~~p~~~~~~ 135 (590)
-.+| .|....|.
T Consensus 96 a~~g-~~~~q~Fa 107 (116)
T PF09477_consen 96 ASSG-SPELQAFA 107 (116)
T ss_dssp CT-S-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6655 34444443
No 391
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=68.04 E-value=61 Score=31.05 Aligned_cols=29 Identities=14% Similarity=-0.018 Sum_probs=14.1
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVPNDVTFLSL 441 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 441 (590)
.+++.+|..+-+.....-..-|..|+..+
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i 167 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLI 167 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 35566666655554433223345555443
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.30 E-value=33 Score=24.64 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHH
Q 038522 48 QAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENAL 116 (590)
Q Consensus 48 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 116 (590)
.+.++++.+.+.|+ .+......+..+-...|+.+.|..+++.+. ..+..|..+++++...|.-+-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 35677888888774 344444444433335688888999998888 78888888888888877655443
No 393
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=67.11 E-value=2.1e+02 Score=31.84 Aligned_cols=92 Identities=7% Similarity=-0.044 Sum_probs=38.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHH-HHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038522 265 SSNKLTGSLIDVYAKYGSIRSAYQ-LYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNI 343 (590)
Q Consensus 265 ~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 343 (590)
++..+-...+.++.+.|..+.+.. +...+..++...-...+.++...+. +++...+..+.. .|+...=...+.+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA--DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc--cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 344455555555555555433322 2222233343344444444444433 344444444442 3344444444444
Q ss_pred HhchhhhHhHHHHHHHHH
Q 038522 344 CANVASLNLGRQIHAFAF 361 (590)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~ 361 (590)
+.+.+....+...+..+.
T Consensus 862 L~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 862 LTRWPGDPAARDALTTAL 879 (897)
T ss_pred HhccCCCHHHHHHHHHHH
Confidence 444322233333333333
No 394
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.85 E-value=41 Score=34.19 Aligned_cols=88 Identities=5% Similarity=-0.008 Sum_probs=63.4
Q ss_pred HhcCChHHHHHHHHhc-C-CCCCH------hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038522 482 ARRGQLESAYNMIRQM-N-IKPTA------SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW 553 (590)
Q Consensus 482 ~~~g~~~~A~~~~~~~-~-~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 553 (590)
.+..++..+.++|..- . ++.|. ...+.+.-.|....+.+.|.+.++++-+.+|.++-.-.....+....|.-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 4556777777777643 2 11121 23445555566778899999999999999998888888888888889999
Q ss_pred HHHHHHHHHhhhcCCc
Q 038522 554 DNARKTRKLMEERSLR 569 (590)
Q Consensus 554 ~~A~~~~~~~~~~~~~ 569 (590)
++|+..+......-..
T Consensus 445 e~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 445 EEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 9999888877664443
No 395
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=66.49 E-value=85 Score=27.68 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=29.7
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH
Q 038522 391 AFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND 435 (590)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 435 (590)
+|.-..+|.+.....++..|. .+++++|.++++++.+.|+.|..
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 344344566666666666554 45688888888888888888743
No 396
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.36 E-value=1e+02 Score=27.78 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhchhhhHhHHHHHHHHHH---hC--CCcchhHHHHHHHHHHhcCChH
Q 038522 315 SKEAFDLFKDMILKKMGI---DDVILCLMLNICANVASLNLGRQIHAFAFK---YQ--SSYDAAVGNALIDMYAKSGEIA 386 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~~~~~ 386 (590)
+++|+.-|.+.++..-.- ....+-.++....+.+++++....+..+.. .. -..+....|++++....+.+.+
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~ 122 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMD 122 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhH
Confidence 566666666655432111 123334455566666666666666555532 11 1335666788888777777777
Q ss_pred HHHHHHHhcCC-----CCcc----hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC----c-------HHHHHHHHHHhh
Q 038522 387 DANRAFDEMGD-----KNVI----SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP----N-------DVTFLSLLFACS 446 (590)
Q Consensus 387 ~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p----~-------~~~~~~ll~~~~ 446 (590)
--..+++.-.+ .|.. |-+-|...|...+.+.+...+++++...--.. | ...|..=+..|.
T Consensus 123 LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT 202 (440)
T KOG1464|consen 123 LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhh
Confidence 66666664331 2333 33567788888899999999999888753222 1 134556667777
Q ss_pred ccCChHHHHHHHHHHHhhcCCCCChhHHHHHH----HHHHhcCChHHHHHHH
Q 038522 447 HTGLTCEGWELFTDMINKYRILPRAEHFSCVV----DLFARRGQLESAYNMI 494 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~ 494 (590)
...+-.....+++....-..-.|.+.....+- ....+.|++++|..-|
T Consensus 203 ~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred hhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 77888888888887664323445554433322 2345678888875443
No 397
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.28 E-value=66 Score=29.18 Aligned_cols=84 Identities=7% Similarity=-0.027 Sum_probs=49.9
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---CCCCCHhHHHHHHHHHH----
Q 038522 442 LFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM---NIKPTASLWSAILGACS---- 514 (590)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~---- 514 (590)
|++++..++|.++....-.-.+. .-+........-|-.|.+.|.+..++++-... +-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 66777888887776654443322 11122344555566778888888877777666 11222334666665554
Q ss_pred -hcCCchHHHHHH
Q 038522 515 -IYGNTSLGELAA 526 (590)
Q Consensus 515 -~~~~~~~a~~~~ 526 (590)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 357888887766
No 398
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=66.28 E-value=39 Score=26.25 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522 418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV 478 (590)
Q Consensus 418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 478 (590)
+..+-++.+....+.|++.....-+++|.+.+++..|..+|+-++.+. .+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 445556667777789999999999999999999999999999988752 22333455555
No 399
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=66.03 E-value=16 Score=33.38 Aligned_cols=79 Identities=9% Similarity=0.067 Sum_probs=52.9
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHH-HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522 467 ILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSA-ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL 543 (590)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 543 (590)
+..|+..|...+....+.|.+.+.-.++.++ ...| |...|-. -.--+...++++.+..++.+.++++|.+|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445666666665555666677777777666 3333 4444432 22234577899999999999999999999988765
Q ss_pred HH
Q 038522 544 SN 545 (590)
Q Consensus 544 ~~ 545 (590)
.+
T Consensus 183 fr 184 (435)
T COG5191 183 FR 184 (435)
T ss_pred HH
Confidence 43
No 400
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=65.80 E-value=47 Score=26.11 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChHHHHHHhc
Q 038522 48 QAHLIHAHIITNGYES-NLHLSTKVIIFYAKVGDVLSARKAFD 89 (590)
Q Consensus 48 ~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 89 (590)
.+.++|+.|...|+-. -...|..-...+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6667777777766533 34456666666666777777776664
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.68 E-value=30 Score=29.76 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=14.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 468 LPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
.|+..++..++.++...|+.++|.++.+++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444555555554444444
No 402
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.90 E-value=73 Score=25.72 Aligned_cols=76 Identities=9% Similarity=0.146 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcC---------CCCcchHHHHHHHHHhcCC-chHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMG---------DKNVISWTSLIAGYAKHGY-GHEAIELYKKMKHEGMVPNDVTFLSLL 442 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 442 (590)
|+++.-....++..-...+++.+. ..+..+|.+++.+..+..- ---+..+|+-|.+.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444455555555544443 1355678888887755443 334567778888777888888888888
Q ss_pred HHhhcc
Q 038522 443 FACSHT 448 (590)
Q Consensus 443 ~~~~~~ 448 (590)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 887764
No 403
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.23 E-value=1.4e+02 Score=29.36 Aligned_cols=13 Identities=23% Similarity=0.187 Sum_probs=5.5
Q ss_pred HhcCChHHHHHHH
Q 038522 177 AKCGWIEDAWILF 189 (590)
Q Consensus 177 ~~~~~~~~A~~~~ 189 (590)
+..|+.+-+..++
T Consensus 143 ~~~~~~~~v~~Ll 155 (413)
T PHA02875 143 VMMGDIKGIELLI 155 (413)
T ss_pred HHcCCHHHHHHHH
Confidence 3444444444443
No 404
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=63.78 E-value=13 Score=32.25 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=33.8
Q ss_pred HHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 481 FARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
..+.++.+.|.+++.+. ...| ....|-.+....-+.|+++.|.+.|++.++++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556666666666665 3333 344566565555666666666666666666666443
No 405
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.49 E-value=92 Score=31.37 Aligned_cols=127 Identities=12% Similarity=0.099 Sum_probs=62.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCC--Ccch---HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDK--NVIS---WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 447 (590)
..++.-|.+.+++++|..++..|.=. .... .+.+...+.+..--++....++.+...=..|....-......|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 45777899999999999999988621 2223 333344444444344444445544443222321111111111110
Q ss_pred cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHH
Q 038522 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGE 523 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 523 (590)
.=.+-|++ +...+.|.+++++|..+--+++ +...|.-+-......|+.+.|.
T Consensus 492 -~V~~~aRR--------------------fFhhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 492 -PVSDLARR--------------------FFHHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred -HHHHHHHH--------------------HHHHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhh
Confidence 00111122 3344556778888887776665 2233333333444566666554
No 406
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.65 E-value=2.1e+02 Score=30.16 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=28.9
Q ss_pred cCCchHHHHHHHHHhcCC---CCCc-chHH-----HHHHHHHhcCChHHHHHHHHHhh
Q 038522 516 YGNTSLGELAARNLFDME---PEKS-VNYV-----VLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~---p~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
.|+.++..........+. |+.. ..|. .+...|...|+.++|.+...+..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 577766655555555332 2212 2232 34455777899999988877653
No 407
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=62.32 E-value=22 Score=31.98 Aligned_cols=58 Identities=21% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
+-.++...++++.|....++.+.++|.++.-+.--+.+|.+.|.+.-|++-++...+.
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 3345667777777888888888888877777777777777777777777777665443
No 408
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.24 E-value=1.5e+02 Score=28.53 Aligned_cols=55 Identities=9% Similarity=-0.012 Sum_probs=26.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh-ccCChHHHHHHHHHHH
Q 038522 408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS-HTGLTCEGWELFTDMI 462 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~ 462 (590)
..+.+.|-+..|+++.+-+......-|+.....+|+.|+ +.+.++-.+++.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 344555555555555555555322224444444444443 4445555555554443
No 409
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.05 E-value=27 Score=28.10 Aligned_cols=65 Identities=12% Similarity=0.042 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522 488 ESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN 555 (590)
Q Consensus 488 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 555 (590)
+.|.++.+-|| ...............|++..|.++...++..+|+|..+-...+.+|...|.-.+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 56677777774 233444455566789999999999999999999999998888888877765444
No 410
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.78 E-value=60 Score=23.66 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 525 AARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 525 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
.+++.++.+|+|......++..+...|++++|.+.+-.+.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555555555443
No 411
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.63 E-value=29 Score=29.84 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=31.7
Q ss_pred CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 498 NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 498 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
...|++..+..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 5678888888888888888888888888888888888
No 412
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=61.16 E-value=15 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 540 YVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
|..|+..|...|.+++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444444444555555544444443
No 413
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=60.41 E-value=16 Score=20.42 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=18.2
Q ss_pred CchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522 518 NTSLGELAARNLFDMEPEKSVNYVVLS 544 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 544 (590)
.++.|..+|++.+...| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 46777888888877777 666666554
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.05 E-value=21 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
.-.+|.+|...|++++|.++++++
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334455555555555555555443
No 415
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=59.12 E-value=21 Score=20.64 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 038522 540 YVVLSNIYTAAGAWDNARKT 559 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~ 559 (590)
+..++-.+..+|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555
No 416
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=59.11 E-value=2.3e+02 Score=29.51 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522 401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL 480 (590)
Q Consensus 401 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (590)
..|..-+..+...++.. ....+++...-.-.+......++..|.+.|-.+.+.++.+.+-.+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~---------------- 434 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQR---------------- 434 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------
Confidence 34444444444333222 445555554322224455566677777777777777776666543
Q ss_pred HHhcCChHHHHHHHHhcCCCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHh---cCCCCCcchHHHHHHHH--HhcCChH
Q 038522 481 FARRGQLESAYNMIRQMNIKPTA-SLWSAILGACSIYGNTSLGELAARNLF---DMEPEKSVNYVVLSNIY--TAAGAWD 554 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~p~~~~~~~~l~~~~--~~~g~~~ 554 (590)
+.+.|++-+|+..+.+.+..... ..-..++..|...|... ...+.+.+. .+. +.-..|..+-..| ...|++.
T Consensus 435 ~~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~~~-~~~ll~~i~~~~~~~-~~L~fla~yreF~~~~~~~~~~ 512 (566)
T PF07575_consen 435 LLKEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGEPL-DDDLLDNIGSPMLLS-QRLSFLAKYREFYELYDEGDFR 512 (566)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred HHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHhcchhhhh-hhhHHHHHHHHHHHHHhhhhHH
Confidence 33445555666666555211111 11122334444444321 111221111 111 1222333333333 4558888
Q ss_pred HHHHHHHHhhhcCC
Q 038522 555 NARKTRKLMEERSL 568 (590)
Q Consensus 555 ~A~~~~~~~~~~~~ 568 (590)
+|.+.+-.+.+..+
T Consensus 513 ~Aa~~Lv~Ll~~~~ 526 (566)
T PF07575_consen 513 EAASLLVSLLKSPI 526 (566)
T ss_dssp --------------
T ss_pred HHHHHHHHHHCCCC
Confidence 88887777766554
No 417
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=58.99 E-value=1.8e+02 Score=28.40 Aligned_cols=335 Identities=13% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC---
Q 038522 69 TKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMR--- 145 (590)
Q Consensus 69 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--- 145 (590)
+-.+.-|...|+..+|.+..+++.. +......+-+++...+.-..|....-.+.+.+...+...-..+.+++.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred -----chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 038522 146 -----WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLF 220 (590)
Q Consensus 146 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 220 (590)
+...|...++.+.-..+.-+-.--+.+-..-...|+.+. .+.|++ ....+|+-|...|+..+..+.+
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~~L 368 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIRSL 368 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCChHHHHHHH
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCC----
Q 038522 221 RSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT---- 296 (590)
Q Consensus 221 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 296 (590)
+++-.-...|-...+..-+..=.+...-+.|-.++..+ +...-..++...-|..+.+.
T Consensus 369 ~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L------------------~~e~fsteDv~~~F~mLLesaedt 430 (645)
T KOG0403|consen 369 RDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDL------------------HGEVFSTEDVEKGFDMLLESAEDT 430 (645)
T ss_pred HHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHh------------------hcccCCHHHHHHHHHHHHhcchhh
Q ss_pred ---CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHH-
Q 038522 297 ---DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVG- 372 (590)
Q Consensus 297 ---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~- 372 (590)
.+..-+.+...+++.-- -+---...-+-....++|.+..-.++=.+-.-...-...+++++..-.-|....+...
T Consensus 431 ALD~p~a~~elalFlARAVi-DdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~k 509 (645)
T KOG0403|consen 431 ALDIPRASQELALFLARAVI-DDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAK 509 (645)
T ss_pred hccccccHHHHHHHHHHHHh-hcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHH
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 038522 373 ---NALIDMYAKSGEIADANRAFDEMGDK---NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGM 431 (590)
Q Consensus 373 ---~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 431 (590)
..|+.-|...|++.+|.+.+.++.-| ..+.+.+++.+.-+.|+-...+.++++....|.
T Consensus 510 dkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 510 DKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 418
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=58.95 E-value=30 Score=25.40 Aligned_cols=25 Identities=8% Similarity=0.069 Sum_probs=18.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCC
Q 038522 509 ILGACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
+.......|++++|...+++++++-
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4445567788888888888888543
No 419
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.83 E-value=1.3e+02 Score=26.61 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=10.6
Q ss_pred CCchHHHHHHHHHhcCCC
Q 038522 517 GNTSLGELAARNLFDMEP 534 (590)
Q Consensus 517 ~~~~~a~~~~~~~~~~~p 534 (590)
.+.-.+...+++-.+++|
T Consensus 209 ~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDP 226 (288)
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 455555556666666666
No 420
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.61 E-value=47 Score=29.35 Aligned_cols=62 Identities=6% Similarity=0.113 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522 475 SCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK 536 (590)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 536 (590)
..+..++...|++-++++...+. ...| +...|-.-..+.+..-+..+|..-+.++++++|.-
T Consensus 234 lNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 234 LNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 33445666778888888888777 4444 55666666677777789999999999999999943
No 421
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.51 E-value=43 Score=26.04 Aligned_cols=53 Identities=15% Similarity=0.162 Sum_probs=37.3
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522 491 YNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL 543 (590)
Q Consensus 491 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 543 (590)
+.-+-.+.+-|++.....-+++|.+.+|+..|..+++-+...-+.....|-.+
T Consensus 72 lN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 72 LNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred HHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33333447788888889999999999999999999988875444333344433
No 422
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=58.15 E-value=1.8e+02 Score=27.97 Aligned_cols=108 Identities=8% Similarity=0.156 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCC------C--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-------cch
Q 038522 475 SCVVDLFARRGQLESAYNMIRQMNIKP------T--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-------SVN 539 (590)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~~~~~p------~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~ 539 (590)
..|.+.+-..|+.++|.+++.+..+.. . ....-.-++.|...+|+-.|--+.+++....-++ ...
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 345667788999999999998873211 1 1111223467888899999888888877432211 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCCceEEeecCc
Q 038522 540 YVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKK 582 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (590)
|..+.....+.+.+=++-+.++.+-+-|-..+..--|..+...
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
Confidence 7777888889999999999999888866544433335544433
No 423
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=57.93 E-value=16 Score=31.74 Aligned_cols=56 Identities=14% Similarity=0.306 Sum_probs=41.1
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA 503 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 503 (590)
..+.++.+.+.+++.+.. +..| ....|-.+...-.+.|+.+.|.+-+++. .+.|+.
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 456778888888888887 3444 4677777787778888888888888776 555543
No 424
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=57.66 E-value=44 Score=20.81 Aligned_cols=33 Identities=15% Similarity=0.232 Sum_probs=19.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038522 107 AQNGYDENALLVFSAMLRSGVRANQFTYSSALR 139 (590)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 139 (590)
.+.|-..++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345555566666666666666655555555443
No 425
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.78 E-value=84 Score=23.74 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=41.5
Q ss_pred chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR 225 (590)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (590)
..++|..+.+.+...+- ....+-..-+..+.+.|++++|+..=.....||...|-+|- -.+.|.-+.+...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 45666666666655542 23333344455666777777774444444446666665543 3366666666666666655
Q ss_pred cC
Q 038522 226 QG 227 (590)
Q Consensus 226 ~~ 227 (590)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 44
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=56.54 E-value=96 Score=24.36 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=30.4
Q ss_pred HHHHHHHHHh--cCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522 521 LGELAARNLF--DMEPEKSVNYVVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 521 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (590)
...++|+.+. ++.-..+..|...+..+-..|++.+|.++++
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566666666 3445567778888888888899999888876
No 427
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=55.91 E-value=2.3e+02 Score=28.46 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=46.4
Q ss_pred CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHH
Q 038522 297 DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALI 376 (590)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 376 (590)
|....-+++..+..+.. ..-...+..+|..-| -+...|..++..+... .-+.-..+|+.+.+..+. |...-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k-~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHK-NQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchH-HHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 33344455555555544 555555666665542 3444455555555544 444455555555555443 333334444
Q ss_pred HHHHhcCChHHHHHHHHhc
Q 038522 377 DMYAKSGEIADANRAFDEM 395 (590)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~ 395 (590)
..|.+ ++...+..+|.++
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka 157 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKA 157 (711)
T ss_pred HHHHH-hchhhHHHHHHHH
Confidence 44444 5555555555544
No 428
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.85 E-value=2e+02 Score=27.83 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 168 VKSALLDLYAKCGWIEDAWILFERIER------KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR 225 (590)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (590)
.+.-+.+.|..+|+++.|.+.|.+... ..+..|-.+|....-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455677888888999999988888653 2345577777777778888877777666654
No 429
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.63 E-value=76 Score=22.90 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=22.8
Q ss_pred hcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 038522 178 KCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDS 216 (590)
Q Consensus 178 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 216 (590)
..|+.+.|.+++..+. +....|..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4456666666666666 5566666666666655554433
No 430
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.63 E-value=2.6e+02 Score=29.03 Aligned_cols=117 Identities=7% Similarity=-0.075 Sum_probs=51.7
Q ss_pred HhcCChHHHHHHHHHHHH-------cCCCCCHhhHHHHHHHHhccC-----chhhHHHHHHHHHhcCCCCchHHHHHHHH
Q 038522 107 AQNGYDENALLVFSAMLR-------SGVRANQFTYSSALRACARMR-----WLQGGRMIQGSIQKGRFVENLFVKSALLD 174 (590)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 174 (590)
...+|.+.|+.+|+...+ .| .......+-..|.+.. +...|..++....+.|. |+.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHH
Confidence 344567777777777655 33 2223333333443321 44556666666666552 22222222221
Q ss_pred HHHh-cCChHHHHHHHhccCCC-CcchHHHHHHHHH----hcCCchHHHHHHHHHHHcC
Q 038522 175 LYAK-CGWIEDAWILFERIERK-DVVSWNAMIGGLA----MQGFNDDSFWLFRSMMRQG 227 (590)
Q Consensus 175 ~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~ 227 (590)
.... ..+...|.++|....+. .+.++-.+..++. ...+...|..++.+..+.|
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 1111 13445566666555432 2222211111111 2234555666666665555
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.68 E-value=50 Score=20.56 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=22.2
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522 411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF 443 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 443 (590)
.+.|-.+++...+++|.+.|+.-++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777777777766666554
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.60 E-value=2.5e+02 Score=28.61 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=85.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh-ccCChHHHHHHHHHHHhhc--CCCCChhHHHHHHHHHHh
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS-HTGLTCEGWELFTDMINKY--RILPRAEHFSCVVDLFAR 483 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 483 (590)
+..+.+.|-+..|+++-+-+.+....-|+.....+|+.|+ +..++.-.+++++...... ..-|+-.--.+++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 4566778888888888888877543336777777777665 6677887888877775431 233554444455666665
Q ss_pred cCC---hHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCC----h
Q 038522 484 RGQ---LESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFD--MEPEKSVNYVVLSNIYTAAGA----W 553 (590)
Q Consensus 484 ~g~---~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~----~ 553 (590)
... -+.|+..+.++ ...| .....|+..+.-. +.|..---++.. ..-....++..++.+|+.... .
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P--~vl~eLld~~~l~---~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~ 503 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHP--LVLSELLDELLLG---DDALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKL 503 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCc--HHHHHHHHhccCC---chhhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcC
Confidence 554 34566666555 3333 2344455443222 112111111111 111245678888888876542 2
Q ss_pred HHHHHHHHHhhh
Q 038522 554 DNARKTRKLMEE 565 (590)
Q Consensus 554 ~~A~~~~~~~~~ 565 (590)
.++...++....
T Consensus 504 P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 504 PDVLSFLESAYH 515 (665)
T ss_pred hHHHHHHHHHHH
Confidence 345555554433
No 433
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=54.53 E-value=20 Score=32.59 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=45.7
Q ss_pred HHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522 481 FARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL 543 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 543 (590)
..+.|+.++|..+|+.+ ...|+ +.....+..-.-..++.-+|-+.|-+++...|.+..++..-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 35788899999999887 55554 44555555555566788888899999999999777665543
No 434
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.51 E-value=1.7e+02 Score=26.64 Aligned_cols=104 Identities=14% Similarity=-0.060 Sum_probs=50.7
Q ss_pred hcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH----HHHcCCCCChhhHHHHHHHhccCCChh-HHH
Q 038522 178 KCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRS----MMRQGMKPDCFTLGSILRASVGGIELM-KIS 252 (590)
Q Consensus 178 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 252 (590)
+++++++|.+++.. -...+.+.|+...|.++-.- ..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666666533 22345555555554444333 334456666655555555444332211 233
Q ss_pred HHHHHHHH---hC--CCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 253 QIHDLIIK---LG--LESSNKLTGSLIDVYAKYGSIRSAYQLYRS 292 (590)
Q Consensus 253 ~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 292 (590)
++.+.+++ .| ..-++.....+...|.+.|++.+|+.-|-.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 33333333 22 223566778888889999999888876644
No 435
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=52.94 E-value=2e+02 Score=27.04 Aligned_cols=162 Identities=9% Similarity=0.030 Sum_probs=82.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcC----C----CCcch-HHHHHHHHHhcCCchHHHHHHHHHHHcC----CCCcHHHHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMG----D----KNVIS-WTSLIAGYAKHGYGHEAIELYKKMKHEG----MVPNDVTFL 439 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~----~----~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~ 439 (590)
..++..|...+++.+|..+...+. + +..+. +-.=-.+|...++..+|...+-..+..- ++|-...-.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 446777777777777776655543 1 11111 1111234445555666655555444321 233222211
Q ss_pred HHHHH--hhccCChHHHHHHHHHHHhhcCCCCC-hh---HHHHHHHHHHhcCChHHHHHHHHhc----CCCCCHhHHHHH
Q 038522 440 SLLFA--CSHTGLTCEGWELFTDMINKYRILPR-AE---HFSCVVDLFARRGQLESAYNMIRQM----NIKPTASLWSAI 509 (590)
Q Consensus 440 ~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~-~~---~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l 509 (590)
-+.++ ++...++..|..+|-+..+.+..-.+ +. ....|+-+=...+..++.-.++..= -..|+......+
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 12221 22336778888877777664322112 22 2233333334556666665555322 234677777777
Q ss_pred HHHHHhc--CCchHHHHHHHHHhcCCC
Q 038522 510 LGACSIY--GNTSLGELAARNLFDMEP 534 (590)
Q Consensus 510 ~~~~~~~--~~~~~a~~~~~~~~~~~p 534 (590)
..++... .+++.|+.-|+.=+..+|
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 7777533 477777777776666665
No 436
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.82 E-value=96 Score=25.15 Aligned_cols=64 Identities=11% Similarity=0.048 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 038522 117 LVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGW 181 (590)
Q Consensus 117 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 181 (590)
++.+.+++.|++++..-. .++..+.+.++.-.|..+++.+.+.+...+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 345566677877665543 4667777777778899999999888766665554444555555553
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.42 E-value=1.2e+02 Score=25.71 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHhhccCChHHHHHHHHHHHh
Q 038522 443 FACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~ 463 (590)
..|.+.|.+++|.+++++..+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 356677777777777777764
No 438
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.37 E-value=2.5e+02 Score=27.96 Aligned_cols=104 Identities=10% Similarity=-0.043 Sum_probs=62.8
Q ss_pred ccCChHHHHHHHHHHHh--hcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhc----------CCCCCH------
Q 038522 447 HTGLTCEGWELFTDMIN--KYRILPR-----AEHFSCVVDLFARRGQLESAYNMIRQM----------NIKPTA------ 503 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~--~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~~------ 503 (590)
-.|++..|.+++...-- ..|...+ ...+|.|.-.+.+.|.+.-+..+|.++ |++|..
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 45677777766544311 1121111 112344444455556665555555443 444422
Q ss_pred -----hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 504 -----SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 504 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
.+|| ..-.+...|++-.|.+.|.++....-.+|..|..|+.+|....
T Consensus 332 nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 332 NKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred ccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 1222 3345778899999999999999888778899999999998653
No 439
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=52.17 E-value=2e+02 Score=26.64 Aligned_cols=69 Identities=10% Similarity=0.102 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHH-HHHHHhCCCcchhHHHHHHHHHHhcCChHHH
Q 038522 315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIH-AFAFKYQSSYDAAVGNALIDMYAKSGEIADA 388 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (590)
+++.....++-.+..-.|+......+-++..+...|..-.+.. +.+.+ ....|..|+.+++..|+.+-.
T Consensus 271 ~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 271 VKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 6776666665444444566543333323333333333222221 11111 234567788888888876644
No 440
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=52.15 E-value=1.9e+02 Score=26.39 Aligned_cols=83 Identities=23% Similarity=0.284 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh
Q 038522 367 YDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS 446 (590)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 446 (590)
-++.....+...|.+.|++.+|+..|-.-.+++...+..++......|...++ +...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46788889999999999999999887655433333332222222222222211 222222333 355
Q ss_pred ccCChHHHHHHHHHHHhh
Q 038522 447 HTGLTCEGWELFTDMINK 464 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~ 464 (590)
..++...|...++...++
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 667888888877777654
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.92 E-value=41 Score=22.38 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=28.8
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522 416 GHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINK 464 (590)
Q Consensus 416 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (590)
.+...++++.+... +-|..-...++.++...|++++|.++++.+.+.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34444555555432 345555566777888888888888887777653
No 442
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.91 E-value=3.8e+02 Score=29.91 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=21.5
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC
Q 038522 397 DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG 449 (590)
Q Consensus 397 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 449 (590)
+++...-.+.+.++...+....+...+..+.+ .++...-...+.++...+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAA 835 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcc
Confidence 44544444555555555544333333333332 233333333444444443
No 443
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=51.00 E-value=1.1e+02 Score=34.48 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=83.7
Q ss_pred HhhccCChHHHHH------HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--------CCCC--CHhHHH
Q 038522 444 ACSHTGLTCEGWE------LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--------NIKP--TASLWS 507 (590)
Q Consensus 444 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p--~~~~~~ 507 (590)
.+...|.+.++.+ ++...... -.++....|..+...+.+.|+.++|+.+-.+. |..+ +...|.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3445566666666 55544322 12334667888999999999999999987665 3222 344566
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhc--------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 508 AILGACSIYGNTSLGELAARNLFD--------MEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+...+...++...|...+.++.. ..|.-......+...+...++++.|+++++.+..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666777888999888888873 2354444456677777788999999999998877
No 444
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.29 E-value=55 Score=30.47 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=49.4
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHh---cCCCchhHHH--HHHHHHHhcCChHHHHHHhccCCC---------CCcc-
Q 038522 33 YMSLLQFCIDKKAERQAHLIHAHIITN---GYESNLHLST--KVIIFYAKVGDVLSARKAFDRMPE---------RNVV- 97 (590)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~~~~---------~~~~- 97 (590)
...++...-+.++.++|.++++.+.+. .-.|+...|. .....+...||.+++.+.+++..+ +++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344444555555888888888888653 1255555544 345566678888888887776543 2222
Q ss_pred chHHHHHH-HHhcCChHHHH
Q 038522 98 SWTAMISG-YAQNGYDENAL 116 (590)
Q Consensus 98 ~~~~li~~-~~~~~~~~~a~ 116 (590)
.|+.+-.- |-+.|++....
T Consensus 158 ~fY~lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASYY 177 (380)
T ss_pred hHHHHHHHHHHHHHhHHHHH
Confidence 35555443 34446665543
No 445
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.23 E-value=3.8e+02 Score=29.39 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 038522 198 VSWNAMIGGLAMQGFNDDSFWLFRSMMRQ 226 (590)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (590)
..|..|+..|...|+.++|++++.+..+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 35888999999999999999999988763
No 446
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.04 E-value=2.3e+02 Score=26.73 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=23.9
Q ss_pred hccCChHHHHHHHHHHHhhcC--CCCChhH--HHHHHHHHHhcCChHHHHHHHHh
Q 038522 446 SHTGLTCEGWELFTDMINKYR--ILPRAEH--FSCVVDLFARRGQLESAYNMIRQ 496 (590)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~ 496 (590)
.+.++.++|.++++++.++.. -.|+... .....+.+...|+..++.+.+.+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd 140 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDD 140 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 344466666666666655421 1223222 22333444455555555555443
No 447
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=49.94 E-value=1.1e+02 Score=23.26 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522 521 LGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 521 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
.+++.+.+...+.|..+..+..|+.=+....-|+++.+--
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ka 101 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKA 101 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3566777777888866555666665554445555554433
No 448
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=49.87 E-value=2.1e+02 Score=26.32 Aligned_cols=67 Identities=10% Similarity=0.065 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 431 MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
-.++..+...++..++..++|.+-.++|+......+...|...|..+|+.....|+..-...+..+-
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 4566666677777777777777777777776643233445667777777777777777666666553
No 449
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=48.76 E-value=87 Score=24.60 Aligned_cols=37 Identities=14% Similarity=0.142 Sum_probs=19.0
Q ss_pred HHHHhccCCCCCcc-----chHHHHHHHHhcCChHHHHHHHH
Q 038522 84 ARKAFDRMPERNVV-----SWTAMISGYAQNGYDENALLVFS 120 (590)
Q Consensus 84 a~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~a~~~~~ 120 (590)
+..+|..|....+. -|......+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455555443222 24444455556666666666654
No 450
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=47.82 E-value=2e+02 Score=25.50 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=28.6
Q ss_pred CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
.|.+.....++..|. .+++++|.+.+..++++.-.......++.++..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K 283 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVK 283 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 566666666666653 457777777777777665433344444444443
No 451
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.78 E-value=83 Score=21.26 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522 27 LLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV 78 (590)
Q Consensus 27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 78 (590)
.|+...++.++...++..-.+++...++...+.| ..+..+|..-++.+++.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 3566778999999999999999999999999998 46788888888777764
No 452
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=47.01 E-value=2.6e+02 Score=26.50 Aligned_cols=114 Identities=9% Similarity=0.040 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh---cCChHHHHHH
Q 038522 417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR---RGQLESAYNM 493 (590)
Q Consensus 417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 493 (590)
+.-+.++++..+.+ +-+......++..+.+..+.++..+.|+++... .+-+...|...++.... .-.++....+
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 34455666666551 224445555666666666666666666666654 12245555555554433 1234444444
Q ss_pred HHhc---------CC------CC--CHhHHHHHH---HHHHhcCCchHHHHHHHHHhcCC
Q 038522 494 IRQM---------NI------KP--TASLWSAIL---GACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 494 ~~~~---------~~------~p--~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
|.+. +. .| +......++ .-....|-.+.|..+++.+++++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 4333 11 01 111122222 22347788888888888888765
No 453
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=46.98 E-value=2.5e+02 Score=26.39 Aligned_cols=81 Identities=15% Similarity=0.012 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhhcCC---CCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHH
Q 038522 451 TCEGWELFTDMINKYRI---LPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAAR 527 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 527 (590)
.+.|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.+...+.+.....++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 34556666665542111 234444455555555555544444444444334455555566666666666666666666
Q ss_pred HHhc
Q 038522 528 NLFD 531 (590)
Q Consensus 528 ~~~~ 531 (590)
.++.
T Consensus 226 ~~l~ 229 (324)
T PF11838_consen 226 LLLS 229 (324)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 6665
No 454
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.82 E-value=37 Score=30.96 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=35.5
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT 502 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 502 (590)
..+.|+.++|..+|+.... +.|+ +.....+....-..++.-+|-..+-++ .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 4467888999999998884 4554 444444444444556666777766665 55553
No 455
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.81 E-value=3e+02 Score=27.14 Aligned_cols=205 Identities=12% Similarity=0.021 Sum_probs=105.3
Q ss_pred cccCChHHHHHHhhhCCCCCCCcc--cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchh--HHHHHHHHHHhcCChHH
Q 038522 8 FKTGQLKQALKFSLSCPDTLLDPS--TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLH--LSTKVIIFYAKVGDVLS 83 (590)
Q Consensus 8 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~ 83 (590)
.+.|+.+-+..+++. |..|+.. ...+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.
T Consensus 10 ~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 10 ILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 456777776666664 3334332 1234445555667765 445556666555432 12234556678899999
Q ss_pred HHHHhccCCCC----CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh--HHHHHHHHhccCchhhHHHHHHHH
Q 038522 84 ARKAFDRMPER----NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFT--YSSALRACARMRWLQGGRMIQGSI 157 (590)
Q Consensus 84 a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~ 157 (590)
+..+++.-... +..-.+ .+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..++
T Consensus 84 v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll--- 155 (413)
T PHA02875 84 VEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI--- 155 (413)
T ss_pred HHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH---
Confidence 88888764431 111223 33334455654 56666667776665332 123445555667766554444
Q ss_pred HhcCCCCch---HHHHHHHHHHHhcCChHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 038522 158 QKGRFVENL---FVKSALLDLYAKCGWIEDAWILFERIERKDVV---SWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD 231 (590)
Q Consensus 158 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 231 (590)
+.|..++. .-.+ -+...+..|+.+-+.-+++.-..++.. -..+++...+..|+.+ +.+.+.+.|..++
T Consensus 156 -~~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 156 -DHKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred -hcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 44443322 1222 233445567776666666554433221 1223444344555543 4444555666655
Q ss_pred h
Q 038522 232 C 232 (590)
Q Consensus 232 ~ 232 (590)
.
T Consensus 230 ~ 230 (413)
T PHA02875 230 I 230 (413)
T ss_pred h
Confidence 3
No 456
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=46.02 E-value=2.3e+02 Score=25.73 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=34.4
Q ss_pred HHHHHHhccCchhhHHHHHHHHHhcC-CCC-----chHHHHHHHHHHHhcCChHHHHHHHhccC
Q 038522 136 SALRACARMRWLQGGRMIQGSIQKGR-FVE-----NLFVKSALLDLYAKCGWIEDAWILFERIE 193 (590)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 193 (590)
.++..|.+.|+++.|-.++--+...+ ... +...-..|+......++|+-+.++.+=+.
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~ 247 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLK 247 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 45566666666666666655554432 112 23344556777777788888777765443
No 457
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.73 E-value=1.3e+02 Score=22.83 Aligned_cols=27 Identities=15% Similarity=0.374 Sum_probs=22.1
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHH
Q 038522 98 SWTAMISGYAQNGYDENALLVFSAMLR 124 (590)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 124 (590)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888766
No 458
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.65 E-value=28 Score=27.38 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=25.3
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038522 106 YAQNGYDENALLVFSAMLRSGVRANQFTYSSALRAC 141 (590)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 141 (590)
....|.-..|..+|+.|++.|-+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999988874 66666543
No 459
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.28 E-value=86 Score=32.73 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=15.5
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKH 428 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 428 (590)
+...++.+|....+++..+++.+.+..
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh
Confidence 344455555556666666666666654
No 460
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.25 E-value=2.2e+02 Score=25.24 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=9.7
Q ss_pred HHHHHHhcCCchHHHHHHHH
Q 038522 406 LIAGYAKHGYGHEAIELYKK 425 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~ 425 (590)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444444555555555444
No 461
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.96 E-value=3.1e+02 Score=26.78 Aligned_cols=16 Identities=6% Similarity=-0.002 Sum_probs=9.4
Q ss_pred cCChHHHHHHHHhcCC
Q 038522 382 SGEIADANRAFDEMGD 397 (590)
Q Consensus 382 ~~~~~~A~~~~~~~~~ 397 (590)
..++++|.+.++....
T Consensus 182 ~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 182 RFDHKEALEYLEKLLK 197 (379)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 3456666666666543
No 462
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.53 E-value=1.2e+02 Score=22.48 Aligned_cols=35 Identities=14% Similarity=-0.078 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
.|...|...|+.+.|.+-|+.=..+.|.+....+.
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKalFPES~~fmDF 111 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKALFPESGVFMDF 111 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHH
Confidence 34444555555555555555555555544444433
No 463
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.51 E-value=43 Score=30.72 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=27.2
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHH
Q 038522 98 SWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYS 135 (590)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 135 (590)
-|+.-|....+.||.++|++++++..+.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36677888888888888888888888777654444443
No 464
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.35 E-value=55 Score=19.21 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=23.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 538 VNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+|..|+.+-...+++++|.+=+++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888888889999999888887765
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.33 E-value=79 Score=26.64 Aligned_cols=46 Identities=13% Similarity=0.335 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHhhcCCCCC--hhHHH-----HHHHHHHhcCChHHHHHHHHhc
Q 038522 451 TCEGWELFTDMINKYRILPR--AEHFS-----CVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~--~~~~~-----~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
.+.|+.+|+.+.+... .|. ..... ..+-.|.+.|.+++|.+++++.
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 4567777777766421 111 11111 2233456666666666666665
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.05 E-value=1.7e+02 Score=23.72 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522 421 ELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG 485 (590)
Q Consensus 421 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (590)
.+.+.+.+.|+++++.-. .++..+...++.-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~-~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREE-GPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHh-CCCCCHhHHHHHHHHHHHCC
Confidence 344556667777665432 4455666666667888888888765 44444444333334444443
No 467
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=42.56 E-value=1.4e+02 Score=29.42 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=43.4
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH--HHHHHHhccC
Q 038522 171 ALLDLYAKCGWIEDAWILFERIERKDV---VSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL--GSILRASVGG 245 (590)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~ 245 (590)
.=+.+.|-.|+++-...+.+.-..+++ .-.+.|+-+ +-.|..+ +.+.+.+.|..++..++ |+.++-|+..
T Consensus 119 tPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa-~ykGh~~----I~qyLle~gADvn~ks~kGNTALH~caEs 193 (615)
T KOG0508|consen 119 TPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIA-CYKGHVD----IAQYLLEQGADVNAKSYKGNTALHDCAES 193 (615)
T ss_pred ccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEee-eccCchH----HHHHHHHhCCCcchhcccCchHHHhhhhc
Confidence 345566667777777666655433321 112222222 2234444 33444556666766655 6778888888
Q ss_pred CChhHHHHHH
Q 038522 246 IELMKISQIH 255 (590)
Q Consensus 246 ~~~~~a~~~~ 255 (590)
|.++-..-++
T Consensus 194 G~vdivq~Ll 203 (615)
T KOG0508|consen 194 GSVDIVQLLL 203 (615)
T ss_pred ccHHHHHHHH
Confidence 8876544443
No 468
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=42.56 E-value=2.9e+02 Score=25.81 Aligned_cols=167 Identities=13% Similarity=0.077 Sum_probs=90.1
Q ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522 354 RQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP 433 (590)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 433 (590)
..+++.+...++.+.......-+..+-+.+.+|-+..++..+.-... .-+.+. . +-.+++.-++++.+. +.|
T Consensus 20 fPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed-~p~a~~----e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 20 FPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSED-MPNALV----E--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhccccccc-chHHHH----H--HHHHHHHHHHHHHHH-HHH
Confidence 34455555566666666667777777788888888888877642111 111111 0 112233333333332 122
Q ss_pred cHHHH-HHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc---CCCCCHhHHHH
Q 038522 434 NDVTF-LSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM---NIKPTASLWSA 508 (590)
Q Consensus 434 ~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ 508 (590)
=...+ +. +.........+....++.+.+.+++.|+ ..+.-.+......+|++..|-.++-.. -..|+....++
T Consensus 92 iv~~le~P--d~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsa 169 (432)
T KOG2758|consen 92 IVKVLENP--DLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSA 169 (432)
T ss_pred HHHHHcCH--HHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHH
Confidence 10000 00 0111111223336778888888888887 556667777778899999887765443 33455544444
Q ss_pred HHHHH---HhcCCchHHHHHHHHHh
Q 038522 509 ILGAC---SIYGNTSLGELAARNLF 530 (590)
Q Consensus 509 l~~~~---~~~~~~~~a~~~~~~~~ 530 (590)
+-.-+ .-..+++.|.+-+.++.
T Consensus 170 lwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 170 LWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33222 23357888877776665
No 469
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.41 E-value=2.9e+02 Score=25.72 Aligned_cols=72 Identities=11% Similarity=0.264 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----------cCChHH
Q 038522 420 IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----------RGQLES 489 (590)
Q Consensus 420 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~ 489 (590)
.++|+.+.+.++.|....+.-+.-.+.+.=.+...+.+|+.+... ..-|..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 577888888888888877777766677777788888888888753 2225555555443 377777
Q ss_pred HHHHHHhc
Q 038522 490 AYNMIRQM 497 (590)
Q Consensus 490 A~~~~~~~ 497 (590)
-+++++..
T Consensus 337 nmkLLQ~y 344 (370)
T KOG4567|consen 337 NMKLLQNY 344 (370)
T ss_pred HHHHHhcC
Confidence 77777664
No 470
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=42.11 E-value=43 Score=32.78 Aligned_cols=102 Identities=14% Similarity=0.108 Sum_probs=68.7
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHH-HHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhc
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLS-LLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARR 484 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 484 (590)
+..+...+.++.|..++.+.++. .||...|.. -..++.+.+++..|+.=+..+.+. .|+ ...|-.=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 44566778899999999999984 787655443 347788999999988877777753 343 22222223344455
Q ss_pred CChHHHHHHHHhc-CCCCCHhHHHHHHHHH
Q 038522 485 GQLESAYNMIRQM-NIKPTASLWSAILGAC 513 (590)
Q Consensus 485 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 513 (590)
+++.+|+..|+.. .+.|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 6677777777776 6778777666666555
No 471
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.86 E-value=48 Score=30.43 Aligned_cols=37 Identities=22% Similarity=0.171 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHH
Q 038522 200 WNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG 236 (590)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 236 (590)
|+..|....+.||+++|+.++++.+..|+.--..+|.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 6677777777777777777777777777654444443
No 472
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=3.4e+02 Score=26.37 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=70.9
Q ss_pred chhHHHHHHHHH--HhcCChHHHHHHHHhcCC----CCcchHHHHH--------HHHHhcCCchHHHHHHHHHHH-cCCC
Q 038522 368 DAAVGNALIDMY--AKSGEIADANRAFDEMGD----KNVISWTSLI--------AGYAKHGYGHEAIELYKKMKH-EGMV 432 (590)
Q Consensus 368 ~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~----~~~~~~~~l~--------~~~~~~~~~~~a~~~~~~m~~-~g~~ 432 (590)
.+..|..++-.+ ....++.+|..+-+.... -|..++..+. .++-..|+......++..... .-+.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 344444443332 345778888777665542 3445554432 233345665566666655443 2233
Q ss_pred Cc----HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHH-------HHHHHHHhcCChHHHHHHHHhc-CCC
Q 038522 433 PN----DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFS-------CVVDLFARRGQLESAYNMIRQM-NIK 500 (590)
Q Consensus 433 p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~-~~~ 500 (590)
-| ....+.+++.|...+.++.|..+..+.. -|+...-+ .+.....-.+++..|.+.|-.+ ...
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 33 3446677777888888888887765543 33322222 2233334567788888877766 444
Q ss_pred CC
Q 038522 501 PT 502 (590)
Q Consensus 501 p~ 502 (590)
|.
T Consensus 278 pq 279 (493)
T KOG2581|consen 278 PQ 279 (493)
T ss_pred cc
Confidence 54
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.29 E-value=89 Score=23.11 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=32.9
Q ss_pred hHHHHHHHHHh-cCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 520 SLGELAARNLF-DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 520 ~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
..-++.++++. +..|-.|..+..|+..|.+.|+.+.|.+-|+.
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 33444555555 33455788899999999999999999999986
No 474
>PRK14015 pepN aminopeptidase N; Provisional
Probab=41.22 E-value=5.4e+02 Score=28.58 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 038522 404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR 483 (590)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (590)
|..+..+...+..+......++..+. .+..--..-+.++...+. .+..+.++...+++.-.| .+++.....-+.
T Consensus 686 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~--lv~~kwf~~qa~ 759 (875)
T PRK14015 686 NVCLSYLAAADDEEAAELAEAQFDQA---DNMTDRLAALSALVNADL-PERDEALADFYDRWKDDP--LVMDKWFALQAT 759 (875)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHhhC---CCHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhCCCc--hhhHHHHHHHhC
Confidence 34444444444433333344444443 233333334444444333 344555666665543333 333333322222
Q ss_pred cCChHHHHHHHHhc----CCCC-CHhHHHHHHHHHHhcCCc------hHHHHHH-HHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 484 RGQLESAYNMIRQM----NIKP-TASLWSAILGACSIYGNT------SLGELAA-RNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 484 ~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~------~~a~~~~-~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
. ....+++..+++ .+.+ ++.-.++|+.+++..+-. ....+++ +.++++++.||.+-..|+..+.+-.
T Consensus 760 ~-~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~ 838 (875)
T PRK14015 760 S-PAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWR 838 (875)
T ss_pred C-CCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhh
Confidence 2 222233333333 3333 445678888888543322 3445544 5556999999999999999999999
Q ss_pred ChHHHHHH
Q 038522 552 AWDNARKT 559 (590)
Q Consensus 552 ~~~~A~~~ 559 (590)
++++.++.
T Consensus 839 ~~~~~r~~ 846 (875)
T PRK14015 839 RYDPKRQA 846 (875)
T ss_pred ccCHHHHH
Confidence 88887664
No 475
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.94 E-value=4.4e+02 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=16.0
Q ss_pred cCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 038522 144 MRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIE 183 (590)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (590)
.|++..+.+....+. .|..+-..+.+.+...|-++
T Consensus 310 ~~d~~~vL~~~~~~~-----~~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 310 EGDIESVLKEISSLF-----DDWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred ccCHHHHHHHHHHHc-----cchhHHHHHHHHHHhcCccc
Confidence 566666666655431 23334445555555555544
No 476
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.71 E-value=43 Score=26.45 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=24.0
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038522 207 LAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRA 241 (590)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 241 (590)
.-..|.-..|..+|++|.+.|-+||. ++.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 33456777899999999999988874 4555544
No 477
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.36 E-value=1.1e+02 Score=27.64 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=10.3
Q ss_pred HHHhhccCChHHHHHHHHHHH
Q 038522 442 LFACSHTGLTCEGWELFTDMI 462 (590)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~ 462 (590)
..-|...|++++|.++|+.+.
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 334445555555555555543
No 478
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=40.28 E-value=2e+02 Score=24.14 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 122 MLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 122 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
+++.|++++..-. .++..+....+.-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4556776665554 45555555566778888888888887666666555555666666644
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.53 E-value=2.4e+02 Score=24.09 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=18.3
Q ss_pred HHHHHHhchhhhHhHHHHHHHHHHhC
Q 038522 339 LMLNICANVASLNLGRQIHAFAFKYQ 364 (590)
Q Consensus 339 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 364 (590)
+++-.|.+..++.++..+++.+.+..
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777778888888877776643
No 480
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=39.52 E-value=89 Score=22.44 Aligned_cols=62 Identities=15% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 038522 49 AHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDEN 114 (590)
Q Consensus 49 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 114 (590)
+..+++.+.+.|+- +.. ..-...+...+.+.+.++++.++.++..+|..+.+++-..|...-
T Consensus 18 ~~~v~~~L~~~~Vl-t~~---~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~L 79 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPD---MIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDL 79 (84)
T ss_pred HHHHHHHHHhcCCC-CHH---HHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHH
Confidence 45577777777642 222 222223345667888888888888888888888888877765443
No 481
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.48 E-value=5e+02 Score=27.64 Aligned_cols=179 Identities=12% Similarity=0.103 Sum_probs=88.2
Q ss_pred hcCChHHHHHHHHhcCCCC---cchHH----HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHH
Q 038522 381 KSGEIADANRAFDEMGDKN---VISWT----SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCE 453 (590)
Q Consensus 381 ~~~~~~~A~~~~~~~~~~~---~~~~~----~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 453 (590)
..|+..+|.+++.-....+ ...|. .+..++...|..+.+.+++.+..+..- -+..-+...+ ++.-.|.-..
T Consensus 369 H~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~-~e~v~hG~cL-GlGLa~mGSa 446 (929)
T KOG2062|consen 369 HRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAE-NEVVRHGACL-GLGLAGMGSA 446 (929)
T ss_pred eccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhcc-chhhhhhhhh-hccchhcccc
Confidence 4567777777776554221 22221 233455556666667777776665422 1222222211 2222222233
Q ss_pred HHHHHHHHHhhcCCCCChhHHH--HHHHHHHhcCC-hHHHHH-HHHhcCCCCCHhHHHHHH--HHHHhcCCchHHHHHHH
Q 038522 454 GWELFTDMINKYRILPRAEHFS--CVVDLFARRGQ-LESAYN-MIRQMNIKPTASLWSAIL--GACSIYGNTSLGELAAR 527 (590)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~-~~~A~~-~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~ 527 (590)
-.++|+.+++. -..-+..+-. .+.-++.-.|. -.+|.+ ++.-..-.....+.+.+. -++...|+-++|..+.+
T Consensus 447 ~~eiYe~lKev-Ly~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~ 525 (929)
T KOG2062|consen 447 NEEIYEKLKEV-LYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIK 525 (929)
T ss_pred cHHHHHHHHHH-HhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHH
Confidence 34556555543 1111221111 12223333332 233433 332222222333333333 44556778888888888
Q ss_pred HHhc-CCC-CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 528 NLFD-MEP-EKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 528 ~~~~-~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
++.. .+| -...-.+.++.+|+..|+-.-..+++.-
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~ 562 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHV 562 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcc
Confidence 8884 445 2333466788889988887777777654
No 482
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.44 E-value=88 Score=28.19 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHh
Q 038522 540 YVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
...+..++.+.|+.++.+.+--++
T Consensus 221 l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 221 LWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445556666666666666554443
No 483
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.91 E-value=2.1e+02 Score=23.20 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=39.6
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhcc-CchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 120 SAMLRSGVRANQFTYSSALRACARM-RWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 120 ~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
+.+.+.|++++..-.. ++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 6 ~~l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455667766655443 44555443 46778888888888887666666655556666666654
No 484
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.36 E-value=2.9e+02 Score=24.58 Aligned_cols=24 Identities=17% Similarity=0.062 Sum_probs=19.3
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCC
Q 038522 409 GYAKHGYGHEAIELYKKMKHEGMV 432 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~g~~ 432 (590)
=+...|+++.|+++.+.+++.|.+
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCC
Confidence 345778999999999999888754
No 485
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.30 E-value=2.9e+02 Score=24.68 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=28.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh-ccCChHHHHHHHHHHHh
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS-HTGLTCEGWELFTDMIN 463 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 463 (590)
+++..-+.++++++...++++...+...+..-.+.+-.+|- ..|....+++++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 34455566667777777777666654444444444444442 22333444555444443
No 486
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=37.95 E-value=3.3e+02 Score=25.14 Aligned_cols=48 Identities=8% Similarity=-0.088 Sum_probs=24.0
Q ss_pred CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---------------ChHHHHHHHHHhhhcCC
Q 038522 518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG---------------AWDNARKTRKLMEERSL 568 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 568 (590)
+.++|...|+++-+.+. ......++ .+...| +...|..++......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 55555555555555544 33344444 344333 55555555555544443
No 487
>PRK12798 chemotaxis protein; Reviewed
Probab=36.77 E-value=4.2e+02 Score=25.98 Aligned_cols=187 Identities=16% Similarity=0.111 Sum_probs=120.0
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHH--hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh-ccCCh
Q 038522 375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYA--KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS-HTGLT 451 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~ 451 (590)
.+-.....|+++-...++..-..++.. ..++.+.. -.|+..++.+.|..+...-.++....+..|+.+-. ...++
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 333344567777666666665443322 22333322 36889999999998887766777777777777654 56679
Q ss_pred HHHHHHHHHHHhhcCCCCChhH----HHHHHHHHHhcCChHHHHHH----HHhcCCCCCHhHH-HHHHHHHHhcCCchHH
Q 038522 452 CEGWELFTDMINKYRILPRAEH----FSCVVDLFARRGQLESAYNM----IRQMNIKPTASLW-SAILGACSIYGNTSLG 522 (590)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~----~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a 522 (590)
..|+++|+...- ..|.... ...-+-.....|+.+++..+ +++....|-..-| ..+..+..+.++-..-
T Consensus 165 ~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~ 241 (421)
T PRK12798 165 ATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD 241 (421)
T ss_pred HHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH
Confidence 999999999873 4565332 33334456788999887555 4555555544444 3344445555544444
Q ss_pred HHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 523 ELAARNLFDMEPE-KSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 523 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
..+...+..++|. ....|..+++.-.-.|+.+-|.-.-++...-
T Consensus 242 ~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 242 ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 4444444466763 4567888899999999999998888777663
No 488
>PRK09857 putative transposase; Provisional
Probab=36.64 E-value=2.3e+02 Score=26.42 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccC
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKN 571 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 571 (590)
..++.--...++.+.-.++.+.+.+..|.......+++.-+...|.-+++++...+|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33443334567776677777777766676666777888888888888888888999988887644
No 489
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.53 E-value=3.3e+02 Score=24.71 Aligned_cols=120 Identities=13% Similarity=0.218 Sum_probs=56.8
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHh-----hccCChHHHHHHHHHHHhhc---CCCCChh
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEG-MVPNDVTFLSLLFAC-----SHTGLTCEGWELFTDMINKY---RILPRAE 472 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 472 (590)
.|..-|..|...++-.....++++..... --|-+... .+++-| .+.|.+++|-.-|-+..+.+ |.+....
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRtt 271 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTT 271 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhH
Confidence 45555667777777777777777665422 23444433 334444 35577777654333333322 2221111
Q ss_pred --HHHHHHHHHHhcC----ChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHH
Q 038522 473 --HFSCVVDLFARRG----QLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAAR 527 (590)
Q Consensus 473 --~~~~l~~~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 527 (590)
-|..|...+.+.| +-.+|.- ....|.......++.+|.. ++..+-+++++
T Consensus 272 CLKYLVLANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~ 327 (440)
T KOG1464|consen 272 CLKYLVLANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQN-NDIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 2344455555554 1111110 0223444556677777643 34444333333
No 490
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.40 E-value=3.6e+02 Score=25.12 Aligned_cols=71 Identities=7% Similarity=0.049 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHH----------hcCCchHHHHHH
Q 038522 151 RMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLA----------MQGFNDDSFWLF 220 (590)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~a~~~~ 220 (590)
.++|+.+...++.|.-..+.=+.-.+.+.=.+.+++.+++.+... ..-|..|+..|| -.|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 456667777777777776666666666666677777777776542 222555554444 357777777766
Q ss_pred HH
Q 038522 221 RS 222 (590)
Q Consensus 221 ~~ 222 (590)
+.
T Consensus 342 Q~ 343 (370)
T KOG4567|consen 342 QN 343 (370)
T ss_pred hc
Confidence 53
No 491
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=36.33 E-value=2.1e+02 Score=22.46 Aligned_cols=58 Identities=10% Similarity=-0.013 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHH-HHHHHHHhcCCchHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWS-AILGACSIYGNTSLGELAARN 528 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~ 528 (590)
..+..++.-++.=.|..++|.+++...+--++....| .++..|....+.++..++-++
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~ 124 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNE 124 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455566666666777777777776664444444443 455666666555555554443
No 492
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.33 E-value=1.6e+02 Score=24.90 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=12.0
Q ss_pred ChHHHHHHHHHhhhcCCccCCCceE
Q 038522 552 AWDNARKTRKLMEERSLRKNPGYSF 576 (590)
Q Consensus 552 ~~~~A~~~~~~~~~~~~~~~~~~~~ 576 (590)
..++..+++..+.+-++..+|..-|
T Consensus 154 s~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 3444444444444545555554444
No 493
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.91 E-value=3.8e+02 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=14.2
Q ss_pred ChHHHHHHhccC-C-CCCccchHHHHHHH
Q 038522 80 DVLSARKAFDRM-P-ERNVVSWTAMISGY 106 (590)
Q Consensus 80 ~~~~a~~~~~~~-~-~~~~~~~~~li~~~ 106 (590)
++..+.+++..+ . +++...|..++..+
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 355666666666 3 35666666655543
No 494
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.90 E-value=4.4e+02 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=26.6
Q ss_pred CCCCCH--hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 498 NIKPTA--SLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 498 ~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
++.|.. .+++.-+..+.+.+++..|-.+.++++++.|.
T Consensus 293 ~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 293 KLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp ---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred CCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 555533 34566677788999999999999999999983
No 495
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.80 E-value=1.7e+02 Score=21.13 Aligned_cols=41 Identities=17% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 253 QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM 293 (590)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 293 (590)
++|+.....|+..|+.+|..+++...-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 67777777788888888877777666555555566666555
No 496
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.57 E-value=3.1e+02 Score=24.19 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC---ChhHHH--HHHHHHHhcCChHHHHHHHHhc---CCCCC
Q 038522 431 MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP---RAEHFS--CVVDLFARRGQLESAYNMIRQM---NIKPT 502 (590)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~---~~~p~ 502 (590)
+.+...-++.|+--|.-...+.+|.+.|..-. ++.| +..+++ .-|......|+.++|.+..... -+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 45566666666666665555666655554443 5555 222222 3455667778888888887776 12223
Q ss_pred HhHHHHHH--HH--HHhcCCchHHHHHHHHHh
Q 038522 503 ASLWSAIL--GA--CSIYGNTSLGELAARNLF 530 (590)
Q Consensus 503 ~~~~~~l~--~~--~~~~~~~~~a~~~~~~~~ 530 (590)
...+-.+. .. ..+.|..+.|+++.+.=+
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 22222221 11 246677777777666444
No 497
>PF13934 ELYS: Nuclear pore complex assembly
Probab=35.22 E-value=3.2e+02 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.063 Sum_probs=9.7
Q ss_pred HHHHhhccCChHHHHHHHHHH
Q 038522 441 LLFACSHTGLTCEGWELFTDM 461 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~ 461 (590)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444445555555544443
No 498
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.20 E-value=2.5e+02 Score=29.22 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHhccCCCC------cchHHHHHHHHHhcCCch------HHHHHHHHHHHcCCCCChhhHHHH
Q 038522 171 ALLDLYAKCGWIEDAWILFERIERKD------VVSWNAMIGGLAMQGFND------DSFWLFRSMMRQGMKPDCFTLGSI 238 (590)
Q Consensus 171 ~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~p~~~~~~~l 238 (590)
+|..+|...|++..+.++++.+...+ ...+|..|+...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Q ss_pred HHHhccCCChhHHHHHHHHHHHh
Q 038522 239 LRASVGGIELMKISQIHDLIIKL 261 (590)
Q Consensus 239 l~~~~~~~~~~~a~~~~~~~~~~ 261 (590)
+++....-+.....-++.+.+..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh
No 499
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=34.23 E-value=1.9e+02 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=13.5
Q ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc
Q 038522 416 GHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT 448 (590)
Q Consensus 416 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 448 (590)
.-.|.++++++.+.+..++..|....|..+...
T Consensus 41 hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 41 AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 334444444444444333444333333333333
No 500
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=34.08 E-value=2.8e+02 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=14.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcC
Q 038522 104 SGYAQNGYDENALLVFSAMLRSG 126 (590)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~m~~~~ 126 (590)
....+.|+.++|.+.|.++...+
T Consensus 173 eL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 173 ELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhCCHHHHHHHHHHHHcCC
Confidence 44456677777777777766543
Done!