Query 038522
Match_columns 590
No_of_seqs 606 out of 2585
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 20:46:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.4E-41 1.2E-45 349.6 40.1 483 75-568 63-581 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.8E-40 1.3E-44 341.7 33.2 479 63-549 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-26 4.6E-31 226.1 42.1 373 139-552 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-26 2.3E-30 221.1 41.5 353 204-567 6-369 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.7E-28 5.9E-33 242.8 20.0 184 97-280 27-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 3.5E-28 1.2E-32 240.6 19.3 214 113-349 7-225 (501)
7 2gw1_A Mitochondrial precursor 99.9 3.5E-24 1.2E-28 217.5 30.7 440 97-568 7-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-23 4.1E-28 213.6 33.5 448 64-544 5-490 (514)
9 3fp2_A TPR repeat-containing p 99.9 8.2E-23 2.8E-27 208.6 31.6 423 96-565 25-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 8.6E-22 2.9E-26 196.2 35.9 343 196-570 25-414 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 5.9E-21 2E-25 190.2 36.7 366 163-556 23-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.1E-20 3.8E-25 192.8 31.4 417 30-464 25-491 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.6E-18 5.6E-23 166.8 33.3 320 197-548 3-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 1.6E-18 5.5E-23 166.8 32.3 306 232-568 3-337 (359)
15 3hym_B Cell division cycle pro 99.8 4.1E-18 1.4E-22 161.9 31.2 287 264-554 19-322 (330)
16 1xi4_A Clathrin heavy chain; a 99.8 9.5E-16 3.3E-20 160.9 49.2 251 3-293 991-1247(1630)
17 3hym_B Cell division cycle pro 99.8 1.3E-17 4.3E-22 158.5 28.7 267 295-567 19-300 (330)
18 1xi4_A Clathrin heavy chain; a 99.8 8E-15 2.7E-19 154.1 51.5 421 28-498 983-1443(1630)
19 2xm6_A Protein corresponding t 99.8 3.7E-16 1.3E-20 156.8 39.1 365 179-563 56-468 (490)
20 2ooe_A Cleavage stimulation fa 99.8 8.8E-16 3E-20 155.8 41.1 412 130-568 12-494 (530)
21 1fch_A Peroxisomal targeting s 99.8 9.3E-18 3.2E-22 162.2 23.6 283 277-564 35-357 (368)
22 1b89_A Protein (clathrin heavy 99.8 1.5E-17 5.1E-22 156.6 21.7 285 178-496 15-307 (449)
23 1b89_A Protein (clathrin heavy 99.8 6.5E-17 2.2E-21 152.3 25.8 220 77-326 15-234 (449)
24 2xm6_A Protein corresponding t 99.8 5.4E-15 1.9E-19 148.3 40.8 353 195-569 37-435 (490)
25 1fch_A Peroxisomal targeting s 99.8 3.3E-17 1.1E-21 158.3 23.2 282 6-291 34-354 (368)
26 3mkr_A Coatomer subunit epsilo 99.8 6.8E-17 2.3E-21 149.4 24.1 268 278-560 10-288 (291)
27 4eqf_A PEX5-related protein; a 99.8 3.6E-17 1.2E-21 157.8 22.0 261 297-562 64-352 (365)
28 4g1t_A Interferon-induced prot 99.8 4.6E-16 1.6E-20 155.8 30.6 385 164-577 49-470 (472)
29 2ooe_A Cleavage stimulation fa 99.8 1.2E-14 4.1E-19 147.4 40.7 412 27-497 10-489 (530)
30 3cv0_A Peroxisome targeting si 99.7 1.3E-16 4.5E-21 151.3 22.4 258 302-565 25-314 (327)
31 3mkr_A Coatomer subunit epsilo 99.7 1.4E-16 4.8E-21 147.2 20.7 248 306-569 7-267 (291)
32 4eqf_A PEX5-related protein; a 99.7 2.4E-16 8.2E-21 152.0 22.3 232 333-567 64-311 (365)
33 4g1t_A Interferon-induced prot 99.7 1E-14 3.4E-19 146.0 32.7 382 129-544 49-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 2.1E-15 7.2E-20 142.9 23.3 260 29-293 20-312 (327)
35 2pl2_A Hypothetical conserved 99.7 2.3E-15 7.9E-20 132.8 18.7 195 366-565 2-213 (217)
36 3spa_A Mtrpol, DNA-directed RN 99.7 3.8E-17 1.3E-21 166.1 6.4 127 64-190 126-260 (1134)
37 3spa_A Mtrpol, DNA-directed RN 99.7 5.3E-17 1.8E-21 165.1 6.9 127 163-289 124-258 (1134)
38 3uq3_A Heat shock protein STI1 99.7 8.7E-15 3E-19 133.3 21.1 218 336-567 7-237 (258)
39 3uq3_A Heat shock protein STI1 99.6 1.5E-14 5.2E-19 131.7 18.6 232 301-546 8-256 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.6E-14 1.6E-18 130.0 20.8 239 312-560 19-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-13 4.9E-18 135.7 24.6 373 139-566 11-421 (452)
42 3e4b_A ALGK; tetratricopeptide 99.6 5.8E-13 2E-17 131.4 28.8 378 34-463 7-420 (452)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.3E-13 4.5E-18 125.0 22.1 198 369-568 37-240 (252)
44 3u4t_A TPR repeat-containing p 99.6 1.7E-13 5.9E-18 125.8 21.8 243 270-551 6-269 (272)
45 2q7f_A YRRB protein; TPR, prot 99.6 4.2E-14 1.4E-18 127.5 17.0 198 368-568 22-224 (243)
46 2vq2_A PILW, putative fimbrial 99.6 2.4E-13 8.1E-18 120.9 21.6 199 368-568 7-213 (225)
47 1ouv_A Conserved hypothetical 99.6 1.2E-12 4E-17 120.3 25.4 220 337-568 9-253 (273)
48 3u4t_A TPR repeat-containing p 99.6 3.5E-13 1.2E-17 123.8 21.2 226 339-569 8-253 (272)
49 2q7f_A YRRB protein; TPR, prot 99.6 1E-13 3.5E-18 125.0 17.2 213 335-551 24-241 (243)
50 3vtx_A MAMA; tetratricopeptide 99.5 2.9E-13 9.9E-18 116.1 18.1 166 399-568 4-172 (184)
51 2ho1_A Type 4 fimbrial biogene 99.5 1.2E-12 4.2E-17 118.6 23.0 204 336-542 39-248 (252)
52 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.9E-13 1.3E-17 123.7 19.8 219 345-568 16-246 (275)
53 2h6f_A Protein farnesyltransfe 99.5 1.1E-12 3.9E-17 125.1 22.7 224 337-567 100-349 (382)
54 2h6f_A Protein farnesyltransfe 99.5 2.7E-12 9.4E-17 122.5 23.8 243 300-550 99-366 (382)
55 2vq2_A PILW, putative fimbrial 99.5 2.4E-12 8.3E-17 114.2 22.0 206 335-543 9-222 (225)
56 4abn_A Tetratricopeptide repea 99.5 2.1E-13 7.2E-18 135.4 15.9 209 350-563 84-318 (474)
57 2pl2_A Hypothetical conserved 99.5 1.2E-12 4.3E-17 115.2 18.8 189 336-530 7-212 (217)
58 4a1s_A PINS, partner of inscut 99.5 2.7E-13 9.3E-18 132.9 16.1 229 337-565 89-371 (411)
59 3sf4_A G-protein-signaling mod 99.5 6E-13 2E-17 130.1 18.2 293 264-557 6-367 (406)
60 1ouv_A Conserved hypothetical 99.5 9.7E-12 3.3E-16 114.1 25.3 218 304-536 12-255 (273)
61 3ro2_A PINS homolog, G-protein 99.5 7.9E-13 2.7E-17 125.5 17.1 231 337-567 46-333 (338)
62 4e6h_A MRNA 3'-END-processing 99.5 7E-10 2.4E-14 113.1 38.3 214 318-536 328-574 (679)
63 3sf4_A G-protein-signaling mod 99.5 7.2E-13 2.5E-17 129.5 16.0 283 237-520 14-364 (406)
64 3ulq_A Response regulator aspa 99.4 2.9E-12 1E-16 124.1 18.4 223 342-565 111-367 (383)
65 3nf1_A KLC 1, kinesin light ch 99.4 7.5E-13 2.6E-17 124.2 11.8 199 368-566 68-307 (311)
66 3vtx_A MAMA; tetratricopeptide 99.4 7.3E-12 2.5E-16 107.3 17.0 167 368-537 4-175 (184)
67 3as5_A MAMA; tetratricopeptide 99.4 3.1E-12 1.1E-16 109.6 14.4 163 403-568 11-175 (186)
68 4e6h_A MRNA 3'-END-processing 99.4 1.5E-09 5.2E-14 110.6 36.1 443 15-481 50-584 (679)
69 4gyw_A UDP-N-acetylglucosamine 99.4 4.4E-12 1.5E-16 130.9 17.4 161 400-565 9-173 (723)
70 4a1s_A PINS, partner of inscut 99.4 1.2E-11 4.2E-16 121.1 18.5 263 242-534 58-374 (411)
71 4i17_A Hypothetical protein; T 99.4 2.2E-11 7.6E-16 108.3 17.4 165 402-569 9-212 (228)
72 2ond_A Cleavage stimulation fa 99.4 1.3E-10 4.5E-15 108.5 23.0 216 316-535 33-273 (308)
73 3ro2_A PINS homolog, G-protein 99.4 2.3E-11 8E-16 115.2 18.2 264 242-534 15-334 (338)
74 3q15_A PSP28, response regulat 99.3 5.8E-11 2E-15 114.6 19.7 222 343-565 110-364 (378)
75 3ulq_A Response regulator aspa 99.3 8.8E-11 3E-15 113.6 20.7 226 307-533 112-369 (383)
76 4abn_A Tetratricopeptide repea 99.3 1.9E-11 6.3E-16 121.4 15.8 180 384-568 83-289 (474)
77 2ond_A Cleavage stimulation fa 99.3 3.2E-10 1.1E-14 105.9 23.3 179 316-497 81-267 (308)
78 4i17_A Hypothetical protein; T 99.3 6.7E-11 2.3E-15 105.2 17.6 204 332-547 5-224 (228)
79 3as5_A MAMA; tetratricopeptide 99.3 1.5E-10 5.2E-15 98.9 17.9 168 369-539 8-180 (186)
80 1hz4_A MALT regulatory protein 99.3 1.5E-09 5.1E-14 104.6 26.8 193 373-565 97-321 (373)
81 3nf1_A KLC 1, kinesin light ch 99.3 1.2E-11 4E-16 115.9 10.2 241 266-535 26-310 (311)
82 3mv2_B Coatomer subunit epsilo 99.2 1.7E-09 5.8E-14 97.6 21.4 244 274-540 20-290 (310)
83 3edt_B KLC 2, kinesin light ch 99.2 1.7E-10 5.7E-15 106.3 15.1 197 369-565 43-280 (283)
84 1qqe_A Vesicular transport pro 99.2 3.7E-10 1.3E-14 104.4 17.1 190 376-565 44-268 (292)
85 3q15_A PSP28, response regulat 99.2 3.3E-09 1.1E-13 102.2 22.2 225 307-532 110-365 (378)
86 1qqe_A Vesicular transport pro 99.2 4.6E-10 1.6E-14 103.8 15.3 172 370-543 78-280 (292)
87 3qky_A Outer membrane assembly 99.2 7.9E-10 2.7E-14 100.5 16.6 183 368-568 14-226 (261)
88 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.7E-09 9.2E-14 94.4 19.3 184 369-572 4-219 (225)
89 2fo7_A Synthetic consensus TPR 99.1 9.4E-10 3.2E-14 88.3 14.2 128 438-567 4-133 (136)
90 4gyw_A UDP-N-acetylglucosamine 99.1 1.1E-09 3.8E-14 113.1 16.5 162 368-534 8-176 (723)
91 4ga2_A E3 SUMO-protein ligase 99.1 1.9E-10 6.4E-15 94.3 8.6 140 408-552 5-149 (150)
92 3qky_A Outer membrane assembly 99.1 2.6E-09 8.7E-14 97.1 17.1 205 332-557 13-252 (261)
93 1hz4_A MALT regulatory protein 99.1 9.6E-08 3.3E-12 91.8 28.7 48 379-426 225-279 (373)
94 3mv2_B Coatomer subunit epsilo 99.1 1.8E-08 6.3E-13 90.9 21.6 239 308-569 23-285 (310)
95 3edt_B KLC 2, kinesin light ch 99.1 2.7E-09 9.3E-14 98.1 16.7 200 334-533 43-282 (283)
96 3qou_A Protein YBBN; thioredox 99.1 4.1E-09 1.4E-13 97.0 16.0 174 387-565 104-283 (287)
97 2pzi_A Probable serine/threoni 99.0 8.7E-10 3E-14 114.5 12.6 167 380-552 402-583 (681)
98 3rjv_A Putative SEL1 repeat pr 99.0 1.8E-08 6.2E-13 88.0 18.3 162 398-568 16-199 (212)
99 3gyz_A Chaperone protein IPGC; 99.0 1.5E-09 5.2E-14 88.3 10.4 103 466-568 30-135 (151)
100 4ga2_A E3 SUMO-protein ligase 99.0 6.9E-10 2.4E-14 90.9 8.4 125 441-568 3-131 (150)
101 2r5s_A Uncharacterized protein 99.0 3E-09 1E-13 90.0 12.1 157 404-565 10-172 (176)
102 2fo7_A Synthetic consensus TPR 99.0 1E-08 3.6E-13 82.0 14.9 131 402-535 3-135 (136)
103 2vsy_A XCC0866; transferase, g 99.0 6E-09 2.1E-13 106.4 15.8 159 382-544 2-169 (568)
104 4gco_A Protein STI-1; structur 99.0 3.6E-09 1.2E-13 83.5 10.4 93 474-566 16-110 (126)
105 3urz_A Uncharacterized protein 99.0 1.4E-08 4.7E-13 88.5 14.6 133 406-544 60-197 (208)
106 3urz_A Uncharacterized protein 99.0 9.4E-09 3.2E-13 89.5 13.5 157 407-569 11-189 (208)
107 2pzi_A Probable serine/threoni 98.9 4.4E-09 1.5E-13 109.2 12.4 153 411-568 402-565 (681)
108 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.4E-08 8.3E-13 87.4 15.2 129 402-536 8-154 (213)
109 2ifu_A Gamma-SNAP; membrane fu 98.9 5.7E-08 1.9E-12 90.4 18.0 218 312-559 5-254 (307)
110 2vgx_A Chaperone SYCD; alterna 98.9 4.3E-09 1.5E-13 85.9 8.7 97 471-567 21-119 (148)
111 3u3w_A Transcriptional activat 98.9 1.3E-07 4.4E-12 87.4 19.8 160 406-565 81-265 (293)
112 4gco_A Protein STI-1; structur 98.9 1.4E-08 4.9E-13 80.0 11.3 115 431-547 8-125 (126)
113 3qou_A Protein YBBN; thioredox 98.9 3.1E-08 1.1E-12 91.0 15.1 136 432-570 114-252 (287)
114 2qfc_A PLCR protein; TPR, HTH, 98.9 5.2E-08 1.8E-12 90.1 16.3 164 402-565 77-265 (293)
115 3dra_A Protein farnesyltransfe 98.8 1.1E-06 3.6E-11 80.4 23.5 192 371-565 69-286 (306)
116 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.1E-07 3.7E-12 84.0 16.0 184 334-538 4-219 (225)
117 2uy1_A Cleavage stimulation fa 98.8 8.7E-06 3E-10 80.6 30.9 120 337-463 289-412 (493)
118 2vsy_A XCC0866; transferase, g 98.8 4.9E-08 1.7E-12 99.6 15.3 146 348-497 3-154 (568)
119 2e2e_A Formate-dependent nitri 98.8 2.1E-08 7.1E-13 84.9 10.5 118 448-567 23-145 (177)
120 1a17_A Serine/threonine protei 98.8 5.6E-08 1.9E-12 81.0 13.1 128 436-565 14-145 (166)
121 2uy1_A Cleavage stimulation fa 98.8 6.2E-06 2.1E-10 81.6 29.1 122 437-565 288-412 (493)
122 2r5s_A Uncharacterized protein 98.8 1.6E-07 5.5E-12 79.2 14.9 154 372-530 9-171 (176)
123 2ifu_A Gamma-SNAP; membrane fu 98.8 5.9E-08 2E-12 90.3 13.2 197 346-564 3-222 (307)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.8E-07 1.3E-11 79.6 17.6 131 372-503 9-154 (213)
125 2lni_A Stress-induced-phosphop 98.8 8.5E-08 2.9E-12 76.4 12.3 117 434-552 15-133 (133)
126 1na0_A Designed protein CTPR3; 98.8 9.8E-08 3.3E-12 75.0 12.5 115 435-551 9-125 (125)
127 2vyi_A SGTA protein; chaperone 98.8 8.7E-08 3E-12 76.0 12.2 119 434-554 11-131 (131)
128 2xcb_A PCRH, regulatory protei 98.8 4.9E-08 1.7E-12 79.0 10.7 96 472-567 19-116 (142)
129 2kck_A TPR repeat; tetratricop 98.8 6.3E-08 2.1E-12 74.4 10.6 101 470-570 5-110 (112)
130 1p5q_A FKBP52, FK506-binding p 98.7 7.2E-08 2.5E-12 90.8 12.7 127 435-564 147-292 (336)
131 1hxi_A PEX5, peroxisome target 98.7 3.7E-08 1.3E-12 77.0 8.7 96 473-568 19-116 (121)
132 3rjv_A Putative SEL1 repeat pr 98.7 6.3E-07 2.2E-11 78.1 17.6 160 368-534 17-199 (212)
133 3upv_A Heat shock protein STI1 98.7 5.9E-08 2E-12 76.6 10.1 96 472-567 5-102 (126)
134 2c2l_A CHIP, carboxy terminus 98.7 4.2E-08 1.4E-12 89.8 10.0 191 368-566 3-199 (281)
135 3gyz_A Chaperone protein IPGC; 98.7 2E-07 6.7E-12 75.7 12.7 104 431-537 31-138 (151)
136 3dra_A Protein farnesyltransfe 98.7 1.4E-05 4.6E-10 73.1 25.9 229 311-545 45-301 (306)
137 4f3v_A ESX-1 secretion system 98.7 3.9E-07 1.3E-11 81.2 14.8 184 381-569 18-240 (282)
138 3sz7_A HSC70 cochaperone (SGT) 98.7 1E-07 3.5E-12 79.3 9.9 111 434-546 10-122 (164)
139 3q49_B STIP1 homology and U bo 98.7 2.2E-07 7.5E-12 74.5 11.2 98 470-567 8-107 (137)
140 4gcn_A Protein STI-1; structur 98.6 9E-08 3.1E-12 75.6 8.4 96 472-567 9-113 (127)
141 1elw_A TPR1-domain of HOP; HOP 98.6 2.5E-07 8.4E-12 71.8 10.9 108 436-545 5-114 (118)
142 2vgx_A Chaperone SYCD; alterna 98.6 1E-07 3.5E-12 77.6 8.7 117 422-542 9-128 (148)
143 2lni_A Stress-induced-phosphop 98.6 2.6E-07 8.8E-12 73.5 11.0 99 470-568 15-115 (133)
144 3u3w_A Transcriptional activat 98.6 3.6E-06 1.2E-10 77.6 19.8 159 374-532 80-266 (293)
145 2dba_A Smooth muscle cell asso 98.6 4.3E-07 1.5E-11 73.8 11.9 93 473-565 30-127 (148)
146 3gw4_A Uncharacterized protein 98.6 9.9E-07 3.4E-11 76.2 14.6 153 412-565 4-175 (203)
147 1elw_A TPR1-domain of HOP; HOP 98.6 8.5E-07 2.9E-11 68.6 12.8 98 471-568 4-103 (118)
148 1na0_A Designed protein CTPR3; 98.6 4.2E-07 1.4E-11 71.2 11.1 98 471-568 9-108 (125)
149 2qfc_A PLCR protein; TPR, HTH, 98.6 3E-06 1E-10 78.1 18.5 162 371-532 77-266 (293)
150 2fbn_A 70 kDa peptidylprolyl i 98.6 4.7E-07 1.6E-11 78.0 11.6 96 472-567 89-187 (198)
151 2e2e_A Formate-dependent nitri 98.5 6.7E-07 2.3E-11 75.4 11.9 127 411-540 21-152 (177)
152 2xev_A YBGF; tetratricopeptide 98.5 3.1E-07 1.1E-11 72.7 9.3 89 478-566 9-105 (129)
153 2dba_A Smooth muscle cell asso 98.5 1.4E-06 4.9E-11 70.7 13.0 112 434-548 27-144 (148)
154 2vyi_A SGTA protein; chaperone 98.5 6.4E-07 2.2E-11 70.9 10.6 99 470-568 11-111 (131)
155 2hr2_A Hypothetical protein; a 98.5 3.3E-07 1.1E-11 73.5 8.6 62 505-566 59-131 (159)
156 2xcb_A PCRH, regulatory protei 98.5 6.5E-07 2.2E-11 72.3 10.5 112 432-545 14-128 (142)
157 3upv_A Heat shock protein STI1 98.5 8.6E-07 3E-11 69.8 10.9 112 435-548 4-123 (126)
158 3sz7_A HSC70 cochaperone (SGT) 98.5 1.2E-06 4.1E-11 72.7 12.0 94 472-565 12-107 (164)
159 4f3v_A ESX-1 secretion system 98.5 4.1E-07 1.4E-11 81.0 9.1 135 404-543 106-247 (282)
160 3gw4_A Uncharacterized protein 98.5 8.2E-07 2.8E-11 76.7 10.7 153 381-533 4-177 (203)
161 3k9i_A BH0479 protein; putativ 98.5 1.1E-07 3.7E-12 73.9 4.5 83 484-566 3-90 (117)
162 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.9E-06 6.7E-11 84.7 14.2 129 437-565 270-414 (457)
163 3rkv_A Putative peptidylprolyl 98.4 6.3E-07 2.1E-11 74.3 8.9 62 505-566 65-126 (162)
164 2if4_A ATFKBP42; FKBP-like, al 98.4 8.5E-07 2.9E-11 83.4 10.7 150 402-571 181-333 (338)
165 1a17_A Serine/threonine protei 98.4 1.6E-06 5.6E-11 71.9 11.1 97 472-568 14-112 (166)
166 1elr_A TPR2A-domain of HOP; HO 98.4 7.4E-07 2.5E-11 70.5 8.5 110 436-548 5-123 (131)
167 3q7a_A Farnesyltransferase alp 98.4 5.1E-05 1.7E-09 70.0 21.5 190 372-565 91-330 (349)
168 3q49_B STIP1 homology and U bo 98.4 1.8E-06 6.2E-11 69.0 10.2 113 433-547 7-126 (137)
169 2fbn_A 70 kDa peptidylprolyl i 98.4 2.4E-07 8.4E-12 79.8 5.1 121 446-568 15-153 (198)
170 2c2l_A CHIP, carboxy terminus 98.4 2.5E-06 8.6E-11 77.9 12.1 107 434-543 3-112 (281)
171 2xev_A YBGF; tetratricopeptide 98.4 4.5E-06 1.5E-10 65.9 12.0 103 441-546 8-119 (129)
172 1wao_1 Serine/threonine protei 98.4 8.8E-07 3E-11 87.6 9.4 118 442-562 13-135 (477)
173 4b4t_Q 26S proteasome regulato 98.4 5.1E-06 1.8E-10 81.5 14.5 189 377-565 12-244 (434)
174 4gcn_A Protein STI-1; structur 98.4 2.2E-06 7.4E-11 67.5 9.5 94 438-534 11-114 (127)
175 2kck_A TPR repeat; tetratricop 98.3 4.7E-06 1.6E-10 63.6 10.7 101 435-537 6-111 (112)
176 3ro3_A PINS homolog, G-protein 98.3 2.2E-06 7.5E-11 70.7 9.4 129 437-565 11-157 (164)
177 1elr_A TPR2A-domain of HOP; HO 98.3 1.8E-06 6.1E-11 68.2 8.4 92 474-565 7-107 (131)
178 3q7a_A Farnesyltransferase alp 98.3 0.00039 1.3E-08 64.2 24.7 231 310-546 65-346 (349)
179 1p5q_A FKBP52, FK506-binding p 98.3 2E-06 6.7E-11 80.9 9.8 119 447-568 125-261 (336)
180 3dss_A Geranylgeranyl transfer 98.3 9.4E-05 3.2E-09 68.0 20.1 162 401-565 109-303 (331)
181 2l6j_A TPR repeat-containing p 98.3 4.6E-07 1.6E-11 69.4 3.8 93 470-562 3-103 (111)
182 2hr2_A Hypothetical protein; a 98.3 9.3E-07 3.2E-11 70.9 5.5 105 438-545 14-144 (159)
183 3dss_A Geranylgeranyl transfer 98.3 0.0004 1.4E-08 63.8 23.7 193 350-548 90-320 (331)
184 1ihg_A Cyclophilin 40; ppiase 98.3 5.2E-06 1.8E-10 79.0 11.5 90 470-559 272-363 (370)
185 1hxi_A PEX5, peroxisome target 98.2 5.9E-06 2E-10 64.3 9.5 97 438-537 20-119 (121)
186 3k9i_A BH0479 protein; putativ 98.2 1.2E-06 4.2E-11 67.8 5.3 92 448-540 3-98 (117)
187 3n71_A Histone lysine methyltr 98.2 4.6E-06 1.6E-10 81.8 10.0 129 444-572 318-470 (490)
188 3rkv_A Putative peptidylprolyl 98.2 3.7E-06 1.3E-10 69.5 8.1 79 471-549 63-144 (162)
189 3ma5_A Tetratricopeptide repea 98.2 5.9E-06 2E-10 61.7 7.6 65 502-566 6-70 (100)
190 2kat_A Uncharacterized protein 98.1 5.7E-06 1.9E-10 63.7 7.4 63 503-565 19-81 (115)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 4.5E-06 1.5E-10 78.5 7.8 118 435-569 179-296 (338)
192 1dce_A Protein (RAB geranylger 98.1 8.6E-05 2.9E-09 74.7 17.0 168 384-555 44-244 (567)
193 4b4t_Q 26S proteasome regulato 98.1 3.2E-05 1.1E-09 75.7 13.6 159 407-565 11-203 (434)
194 1na3_A Designed protein CTPR2; 98.1 1.3E-05 4.6E-10 58.4 8.2 81 471-551 9-91 (91)
195 3bee_A Putative YFRE protein; 98.1 1.7E-05 5.9E-10 57.7 8.6 74 500-574 3-79 (93)
196 1ihg_A Cyclophilin 40; ppiase 98.1 1.2E-05 4.3E-10 76.3 10.0 67 502-568 272-338 (370)
197 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 8.4E-06 2.9E-10 80.2 9.0 120 447-569 246-383 (457)
198 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.9E-10 65.2 9.4 131 403-533 12-159 (164)
199 1zu2_A Mitochondrial import re 98.0 3.2E-06 1.1E-10 67.6 4.2 86 483-568 14-122 (158)
200 1wao_1 Serine/threonine protei 98.0 3.1E-05 1E-09 76.5 11.8 115 409-527 15-134 (477)
201 2l6j_A TPR repeat-containing p 97.9 2.8E-05 9.6E-10 59.2 7.5 69 501-569 2-70 (111)
202 1klx_A Cysteine rich protein B 97.9 0.00013 4.5E-09 58.0 10.6 111 450-568 10-128 (138)
203 1dce_A Protein (RAB geranylger 97.8 0.00073 2.5E-08 68.0 17.2 151 414-568 43-223 (567)
204 1na3_A Designed protein CTPR2; 97.8 5.8E-05 2E-09 54.8 6.8 67 502-568 8-74 (91)
205 2kat_A Uncharacterized protein 97.6 0.00015 5E-09 55.6 7.7 80 453-534 3-84 (115)
206 1zu2_A Mitochondrial import re 97.6 5.5E-05 1.9E-09 60.5 4.8 89 450-541 17-129 (158)
207 2kc7_A BFR218_protein; tetratr 97.6 6.5E-05 2.2E-09 55.7 5.0 81 477-565 6-89 (99)
208 3n71_A Histone lysine methyltr 97.6 0.0003 1E-08 68.9 10.6 123 409-531 318-463 (490)
209 3qww_A SET and MYND domain-con 97.5 0.00021 7E-09 68.9 8.3 82 484-565 311-410 (433)
210 2kc7_A BFR218_protein; tetratr 97.5 0.00019 6.6E-09 53.1 6.5 62 509-570 6-68 (99)
211 3lvg_A Clathrin heavy chain 1; 97.5 0.00013 4.4E-09 68.5 6.4 237 64-319 53-324 (624)
212 3qwp_A SET and MYND domain-con 97.4 0.00039 1.3E-08 67.1 9.1 87 479-565 295-399 (429)
213 3ma5_A Tetratricopeptide repea 97.4 0.00038 1.3E-08 51.6 6.7 65 470-534 6-72 (100)
214 1wy6_A Hypothetical protein ST 97.4 0.02 6.9E-07 43.3 15.4 140 411-569 18-157 (172)
215 1klx_A Cysteine rich protein B 97.4 0.0027 9.1E-08 50.3 12.0 112 414-534 9-128 (138)
216 3lvg_A Clathrin heavy chain 1; 97.4 0.00028 9.5E-09 66.3 6.6 400 3-457 60-534 (624)
217 3ly7_A Transcriptional activat 97.3 0.0018 6.1E-08 59.7 11.2 68 500-568 274-341 (372)
218 3ly7_A Transcriptional activat 97.3 0.0055 1.9E-07 56.5 14.0 138 398-537 192-344 (372)
219 3u64_A Protein TP_0956; tetrat 97.2 0.00092 3.2E-08 58.9 8.0 87 488-574 180-277 (301)
220 1pc2_A Mitochondria fission pr 97.1 0.001 3.4E-08 52.6 6.5 91 449-541 12-109 (152)
221 3qww_A SET and MYND domain-con 97.1 0.0029 9.9E-08 60.9 11.2 95 447-541 310-425 (433)
222 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0041 1.4E-07 46.3 8.8 75 470-544 4-87 (104)
223 1qsa_A Protein (soluble lytic 97.0 0.21 7.1E-06 50.3 23.4 317 176-531 16-347 (618)
224 3qwp_A SET and MYND domain-con 97.0 0.0057 1.9E-07 59.0 11.8 101 442-542 294-415 (429)
225 3bee_A Putative YFRE protein; 96.7 0.019 6.3E-07 41.5 9.7 68 468-535 3-75 (93)
226 1pc2_A Mitochondria fission pr 96.6 0.0082 2.8E-07 47.4 7.8 82 418-502 16-103 (152)
227 3mkq_A Coatomer beta'-subunit; 96.4 0.025 8.5E-07 60.2 13.0 27 471-497 681-707 (814)
228 3mkq_A Coatomer beta'-subunit; 96.4 0.14 4.9E-06 54.3 18.8 155 104-293 607-762 (814)
229 4h7y_A Dual specificity protei 96.4 0.02 6.9E-07 44.4 8.5 106 434-541 12-132 (161)
230 1nzn_A CGI-135 protein, fissio 96.2 0.018 6E-07 43.7 7.5 87 451-539 17-110 (126)
231 2v5f_A Prolyl 4-hydroxylase su 96.2 0.018 6.2E-07 42.7 7.7 67 502-568 4-77 (104)
232 3mkq_B Coatomer subunit alpha; 96.0 0.18 6.2E-06 40.9 12.9 129 407-563 12-141 (177)
233 3mkq_B Coatomer subunit alpha; 95.8 0.62 2.1E-05 37.7 15.1 131 376-530 12-142 (177)
234 4h7y_A Dual specificity protei 95.8 0.045 1.5E-06 42.5 7.9 102 469-570 11-127 (161)
235 4gns_B Protein CSD3, chitin bi 95.7 0.059 2E-06 55.2 10.9 55 510-564 344-398 (754)
236 3u64_A Protein TP_0956; tetrat 95.5 0.033 1.1E-06 49.2 7.3 103 452-563 180-295 (301)
237 1nzn_A CGI-135 protein, fissio 95.5 0.15 5E-06 38.7 9.8 68 501-568 33-105 (126)
238 4ady_A RPN2, 26S proteasome re 95.2 3.8 0.00013 43.0 34.8 265 241-510 383-668 (963)
239 1wy6_A Hypothetical protein ST 94.5 1.2 4E-05 33.9 12.5 64 402-467 93-156 (172)
240 1y8m_A FIS1; mitochondria, unk 94.4 0.19 6.5E-06 38.7 7.9 72 468-539 36-113 (144)
241 3ffl_A Anaphase-promoting comp 94.3 0.22 7.4E-06 39.6 8.2 125 429-565 12-150 (167)
242 3o48_A Mitochondria fission 1 94.2 0.096 3.3E-06 39.8 5.7 71 469-539 38-114 (134)
243 2wpv_A GET4, UPF0363 protein Y 93.4 4.4 0.00015 36.5 17.9 112 169-291 36-158 (312)
244 4ady_A RPN2, 26S proteasome re 92.9 11 0.00037 39.7 33.6 253 274-531 381-657 (963)
245 2ff4_A Probable regulatory pro 92.6 0.21 7E-06 47.4 6.7 58 508-565 176-233 (388)
246 4b4t_P 26S proteasome regulato 92.1 3.2 0.00011 40.0 14.5 91 475-565 141-246 (445)
247 3ffl_A Anaphase-promoting comp 91.6 0.84 2.9E-05 36.3 7.9 63 402-464 22-92 (167)
248 2uwj_G Type III export protein 90.2 3.7 0.00013 29.1 9.4 88 44-136 20-107 (115)
249 1y8m_A FIS1; mitochondria, unk 90.0 4.7 0.00016 31.1 10.5 69 433-502 37-109 (144)
250 2wpv_A GET4, UPF0363 protein Y 89.9 11 0.00037 34.0 20.5 166 272-464 38-217 (312)
251 2p58_C Putative type III secre 89.9 4 0.00014 29.0 9.2 89 43-136 20-108 (116)
252 3lpz_A GET4 (YOR164C homolog); 89.8 11 0.00039 34.1 21.5 113 168-291 37-160 (336)
253 1v54_E Cytochrome C oxidase po 88.4 3.1 0.00011 29.7 7.7 63 415-479 25-87 (109)
254 4b4t_P 26S proteasome regulato 87.8 20 0.00069 34.4 17.6 185 312-497 30-244 (445)
255 3txn_A 26S proteasome regulato 87.1 20 0.00067 33.6 17.3 23 406-428 105-127 (394)
256 2uwj_G Type III export protein 87.0 6.5 0.00022 27.9 8.8 86 146-236 21-106 (115)
257 3lpz_A GET4 (YOR164C homolog); 86.8 18 0.00061 32.8 24.1 165 272-463 40-215 (336)
258 4gns_B Protein CSD3, chitin bi 86.7 4 0.00014 42.0 10.8 51 445-498 347-398 (754)
259 4fhn_B Nucleoporin NUP120; pro 86.7 3.5 0.00012 45.4 11.3 62 506-567 902-968 (1139)
260 1zbp_A Hypothetical protein VP 86.6 1.3 4.5E-05 38.5 6.2 55 480-534 6-62 (273)
261 2p58_C Putative type III secre 86.5 7 0.00024 27.8 9.1 86 146-236 22-107 (116)
262 4fhn_B Nucleoporin NUP120; pro 86.2 19 0.00064 39.7 16.7 186 339-532 817-1050(1139)
263 2ff4_A Probable regulatory pro 85.9 7.8 0.00027 36.5 11.9 57 439-497 175-231 (388)
264 3esl_A Checkpoint serine/threo 85.7 7.4 0.00025 32.1 9.9 50 484-533 92-145 (202)
265 1zbp_A Hypothetical protein VP 85.4 3.7 0.00013 35.8 8.3 51 445-497 7-57 (273)
266 3o48_A Mitochondria fission 1 85.4 10 0.00036 28.8 10.2 76 430-506 35-114 (134)
267 2y69_E Cytochrome C oxidase su 82.6 7.5 0.00026 29.5 7.7 61 417-479 70-130 (152)
268 4a1g_A Mitotic checkpoint seri 81.8 14 0.00048 28.9 9.6 50 521-570 83-134 (152)
269 3ltm_A Alpha-REP4; protein eng 80.4 24 0.00083 29.4 17.7 60 265-326 124-183 (211)
270 3ltj_A Alpharep-4; protein eng 80.0 24 0.00082 29.1 19.2 141 63-211 26-166 (201)
271 1v54_E Cytochrome C oxidase po 78.0 16 0.00056 26.1 9.3 62 315-377 26-87 (109)
272 4b4t_R RPN7, 26S proteasome re 78.0 4.7 0.00016 38.7 7.2 61 437-497 133-194 (429)
273 3txn_A 26S proteasome regulato 77.6 47 0.0016 31.1 21.7 285 270-568 22-345 (394)
274 2wvi_A Mitotic checkpoint seri 77.3 19 0.00065 28.7 9.2 29 505-533 98-126 (164)
275 1wdy_A 2-5A-dependent ribonucl 76.7 33 0.0011 29.9 12.3 41 251-291 198-240 (285)
276 3ltm_A Alpha-REP4; protein eng 76.4 32 0.0011 28.6 19.0 142 63-212 31-172 (211)
277 3kea_A K1L; tropism, ANK repea 75.3 43 0.0015 29.6 13.0 169 9-191 8-183 (285)
278 3eiq_C Programmed cell death p 75.2 30 0.001 31.9 11.2 69 372-440 220-293 (358)
279 1wdy_A 2-5A-dependent ribonucl 74.9 42 0.0014 29.2 12.9 53 36-92 8-63 (285)
280 3ltj_A Alpharep-4; protein eng 74.3 35 0.0012 28.0 18.7 60 265-326 119-178 (201)
281 3eiq_C Programmed cell death p 74.2 18 0.00061 33.3 9.5 74 271-344 221-298 (358)
282 1qsa_A Protein (soluble lytic 73.8 78 0.0027 31.8 39.2 305 7-327 16-347 (618)
283 3esl_A Checkpoint serine/threo 72.3 21 0.0007 29.5 8.4 59 46-104 95-154 (202)
284 2qx5_A Nucleoporin NIC96; mRNA 71.0 57 0.0019 33.0 13.0 20 174-193 451-470 (661)
285 4b4t_R RPN7, 26S proteasome re 68.3 53 0.0018 31.2 12.0 57 371-427 133-195 (429)
286 4b4t_S RPN3, 26S proteasome re 66.1 18 0.0006 35.2 7.8 67 471-537 231-304 (523)
287 1oyz_A Hypothetical protein YI 66.0 68 0.0023 28.0 22.6 12 373-384 210-221 (280)
288 2y69_E Cytochrome C oxidase su 64.4 45 0.0015 25.4 9.3 60 317-377 71-130 (152)
289 4a1g_A Mitotic checkpoint seri 63.3 34 0.0012 26.8 7.6 51 82-132 82-137 (152)
290 4aez_C MAD3, mitotic spindle c 63.3 28 0.00096 29.3 7.6 31 503-533 150-180 (223)
291 2zu6_B Programmed cell death p 62.6 38 0.0013 30.4 9.0 65 373-437 170-239 (307)
292 3mv2_A Coatomer subunit alpha; 62.3 89 0.003 28.1 11.5 126 410-567 124-257 (325)
293 2zu6_B Programmed cell death p 60.6 20 0.00067 32.3 6.7 66 272-337 171-240 (307)
294 3kea_A K1L; tropism, ANK repea 60.3 32 0.0011 30.4 8.4 17 74-90 37-53 (285)
295 1wgl_A TOLL-interacting protei 58.4 10 0.00036 24.0 3.2 48 524-572 11-58 (59)
296 3hra_A Ankyrin repeat family p 57.2 63 0.0021 26.3 9.3 51 75-130 12-66 (201)
297 2d2s_A Exocyst complex compone 56.4 51 0.0017 28.2 8.3 86 478-565 25-119 (235)
298 2d2s_A Exocyst complex compone 56.3 68 0.0023 27.4 9.1 23 102-124 24-46 (235)
299 3jxi_A Vanilloid receptor-rela 56.2 48 0.0016 28.6 8.7 55 104-158 10-73 (260)
300 2nsz_A Programmed cell death p 53.0 44 0.0015 25.3 6.7 66 271-336 11-80 (129)
301 1k1a_A B-cell lymphoma 3-encod 52.5 1E+02 0.0035 25.8 10.7 53 39-91 15-69 (241)
302 4gq2_M Nucleoporin NUP120; bet 50.5 1E+02 0.0035 33.0 11.4 51 441-497 816-866 (950)
303 2wvi_A Mitotic checkpoint seri 50.4 77 0.0026 25.2 7.8 49 84-132 79-132 (164)
304 3b7b_A Euchromatic histone-lys 50.0 1.1E+02 0.0037 25.6 9.9 82 174-260 149-235 (237)
305 2ion_A PDCD4, programmed cell 49.4 76 0.0026 24.8 7.7 64 373-436 13-81 (152)
306 4b4t_S RPN3, 26S proteasome re 49.0 69 0.0023 31.1 8.7 120 435-562 231-366 (523)
307 3bu8_A Telomeric repeat-bindin 47.8 89 0.003 26.0 7.8 18 480-497 123-140 (235)
308 2nsz_A Programmed cell death p 47.5 89 0.003 23.6 9.0 64 373-436 11-79 (129)
309 1ug3_A EIF4GI, eukaryotic prot 46.6 1.5E+02 0.0052 27.0 10.5 25 99-123 14-38 (339)
310 3eu9_A Huntingtin-interacting 45.7 1E+02 0.0035 25.7 9.0 20 72-91 46-65 (240)
311 2ion_A PDCD4, programmed cell 45.4 64 0.0022 25.3 6.7 66 271-336 13-82 (152)
312 3hra_A Ankyrin repeat family p 44.8 87 0.003 25.4 8.2 81 5-90 10-94 (201)
313 3bqo_A Telomeric repeat-bindin 44.5 69 0.0024 26.2 6.6 28 512-539 126-153 (211)
314 3eu9_A Huntingtin-interacting 42.4 67 0.0023 27.0 7.3 115 5-129 14-135 (240)
315 2fe3_A Peroxide operon regulat 42.3 1E+02 0.0036 23.7 7.6 62 120-182 11-72 (145)
316 2w57_A Ferric uptake regulatio 41.0 1.1E+02 0.0038 23.7 7.6 64 119-183 5-69 (150)
317 4aez_C MAD3, mitotic spindle c 40.9 77 0.0026 26.7 6.7 33 98-130 152-184 (223)
318 2fu4_A Ferric uptake regulatio 40.6 82 0.0028 21.2 7.4 62 120-182 6-68 (83)
319 3ljn_A Hypothetical protein; a 40.5 1.1E+02 0.0036 28.1 8.8 96 28-128 16-113 (364)
320 1mzb_A Ferric uptake regulatio 39.5 1.1E+02 0.0037 23.3 7.2 62 120-182 7-69 (136)
321 2xig_A Ferric uptake regulatio 39.3 1.2E+02 0.0042 23.5 7.6 63 119-182 15-77 (150)
322 1ya0_A SMG-7 transcript varian 39.0 67 0.0023 31.2 7.1 72 477-548 158-231 (497)
323 4g8k_A 2-5A-dependent ribonucl 38.9 2.1E+02 0.0071 25.6 10.4 40 51-90 220-261 (337)
324 2qx5_A Nucleoporin NIC96; mRNA 37.2 3.4E+02 0.012 27.4 16.0 19 275-293 451-469 (661)
325 3aji_A 26S proteasome non-ATPa 37.1 1.5E+02 0.0051 24.6 8.6 53 174-231 144-199 (231)
326 1k1a_A B-cell lymphoma 3-encod 35.5 1.9E+02 0.0066 24.0 9.9 20 107-126 17-36 (241)
327 3kae_A CDC27, possible protein 35.5 1.7E+02 0.0058 23.4 9.6 80 481-563 43-140 (242)
328 2fe3_A Peroxide operon regulat 35.3 1.2E+02 0.0041 23.3 6.9 60 425-486 12-71 (145)
329 3eyy_A Putative iron uptake re 34.7 1.1E+02 0.0038 23.6 6.6 61 120-182 8-68 (145)
330 1bpo_A Protein (clathrin); cla 34.3 1.3E+02 0.0044 28.7 7.7 137 11-157 343-482 (494)
331 1n11_A Ankyrin; clathrin, BAND 33.7 3E+02 0.01 25.7 13.3 340 1-358 15-365 (437)
332 3l6a_A Eukaryotic translation 32.5 3E+02 0.01 25.3 12.6 65 272-336 17-85 (364)
333 3l6a_A Eukaryotic translation 32.1 3E+02 0.01 25.3 11.8 65 68-132 15-84 (364)
334 3jxi_A Vanilloid receptor-rela 31.7 1.7E+02 0.0059 24.8 8.3 89 204-293 9-116 (260)
335 3b7b_A Euchromatic histone-lys 31.3 2.3E+02 0.0077 23.5 9.7 79 207-293 151-233 (237)
336 2rfa_A Transient receptor pote 31.2 2.2E+02 0.0077 23.5 9.2 148 4-162 7-182 (232)
337 2ko4_A Mediator of RNA polymer 30.6 1.2E+02 0.0041 20.3 4.9 40 18-57 24-63 (81)
338 2p1h_A APAF-1, apoptotic prote 29.6 1.2E+02 0.0042 21.1 5.5 61 49-113 24-84 (94)
339 1bd8_A P19INK4D CDK4/6 inhibit 29.6 1.1E+02 0.0037 23.4 6.0 14 178-191 110-123 (156)
340 2ijq_A Hypothetical protein; s 29.4 2.1E+02 0.0072 22.6 7.2 60 471-531 33-103 (161)
341 2b7e_A PRE-mRNA processing pro 29.0 55 0.0019 20.6 3.0 33 112-144 2-35 (59)
342 2xig_A Ferric uptake regulatio 28.9 1.8E+02 0.006 22.6 6.9 59 426-486 18-76 (150)
343 4ets_A Ferric uptake regulatio 28.8 1.7E+02 0.0057 23.1 6.8 69 113-182 14-85 (162)
344 4ets_A Ferric uptake regulatio 28.5 1.4E+02 0.0048 23.6 6.3 58 427-485 25-83 (162)
345 1q02_A Sequestosome 1; helical 28.3 94 0.0032 18.9 3.7 39 487-527 10-48 (52)
346 2w57_A Ferric uptake regulatio 27.9 2.1E+02 0.0072 22.1 7.5 61 424-486 6-67 (150)
347 1oyz_A Hypothetical protein YI 27.3 3E+02 0.01 23.7 25.7 18 367-384 140-157 (280)
348 2f6m_A Suppressor protein STP2 25.3 1.4E+02 0.0048 19.2 5.0 47 32-79 4-50 (65)
349 1bpo_A Protein (clathrin); cla 25.2 4.6E+02 0.016 25.1 10.2 59 413-476 342-400 (494)
350 3mwm_A ZUR, putative metal upt 25.1 97 0.0033 23.7 4.7 49 34-82 17-65 (139)
351 2fu4_A Ferric uptake regulatio 24.5 1.6E+02 0.0055 19.6 7.3 61 424-486 6-67 (83)
352 3aji_A 26S proteasome non-ATPa 24.4 2.8E+02 0.0095 22.8 8.1 15 75-89 13-27 (231)
353 1otr_A Protein CUE2; protein-p 23.6 1.3E+02 0.0044 18.1 4.0 36 527-563 9-44 (49)
354 2o03_A Probable zinc uptake re 23.5 1.3E+02 0.0045 22.6 5.1 45 406-450 16-60 (131)
355 3ljn_A Hypothetical protein; a 23.4 3.3E+02 0.011 24.6 9.0 176 377-562 58-266 (364)
356 4b4t_O 26S proteasome regulato 23.3 2.6E+02 0.0089 26.1 8.1 56 442-497 83-153 (393)
357 2crb_A Nuclear receptor bindin 23.3 1.1E+02 0.0037 21.4 3.8 23 540-562 18-40 (97)
358 1ug3_A EIF4GI, eukaryotic prot 23.1 4.2E+02 0.014 24.0 14.3 24 273-296 17-40 (339)
359 3qil_A Clathrin heavy chain 1; 23.0 48 0.0016 24.6 2.2 72 6-87 15-86 (125)
360 3ygs_P Procaspase 9; apoptosis 22.5 1.4E+02 0.0047 21.1 4.7 37 383-419 51-87 (97)
361 3bu8_A Telomeric repeat-bindin 22.5 96 0.0033 25.8 4.1 43 509-551 120-162 (235)
362 3kae_A CDC27, possible protein 22.3 3E+02 0.01 22.0 14.0 81 381-463 45-142 (242)
363 3ygs_P Procaspase 9; apoptosis 22.1 1.2E+02 0.004 21.5 4.2 37 180-216 51-87 (97)
364 3v31_A Ankyrin repeat family A 22.0 2.7E+02 0.0093 21.3 10.0 17 6-22 9-25 (167)
365 4gq2_M Nucleoporin NUP120; bet 21.8 5.6E+02 0.019 27.4 11.2 51 172-223 816-866 (950)
366 2o03_A Probable zinc uptake re 21.6 1.7E+02 0.0058 21.9 5.4 44 203-246 16-59 (131)
367 1mzb_A Ferric uptake regulatio 21.4 1.3E+02 0.0046 22.7 4.8 58 24-82 12-70 (136)
368 3mwm_A ZUR, putative metal upt 21.0 1.2E+02 0.004 23.2 4.4 38 412-449 25-62 (139)
369 3bqo_A Telomeric repeat-bindin 20.9 1.8E+02 0.006 23.9 5.3 23 70-92 122-144 (211)
370 2etb_A Transient receptor pote 20.9 84 0.0029 26.9 4.1 28 37-64 6-33 (256)
371 3eyy_A Putative iron uptake re 20.5 2.1E+02 0.007 22.0 5.7 34 451-485 33-66 (145)
372 3t8k_A Uncharacterized protein 20.4 3.3E+02 0.011 21.7 9.5 55 76-131 14-70 (186)
373 1wty_A Hypothetical protein TT 20.1 2.6E+02 0.009 20.5 6.1 67 415-487 3-69 (119)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-41 Score=349.55 Aligned_cols=483 Identities=10% Similarity=-0.060 Sum_probs=402.9
Q ss_pred HHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHH
Q 038522 75 YAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQ 154 (590)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 154 (590)
+...|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+ ..|+..++..+...|.+.|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45677788888888888888999999999999999999999999999985 5688899999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC-------------------CcchHHHHHHHHHhcCCchH
Q 038522 155 GSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK-------------------DVVSWNAMIGGLAMQGFNDD 215 (590)
Q Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~ 215 (590)
+.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 988653 688899999999999999999999999965433 37789999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHH--HH-HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKIS--QI-HDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRS 292 (590)
Q Consensus 216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 292 (590)
|.++|++|.+.+ +.+...+..+...+...+..+... .+ +..+...+..+...+|+.++..|.+.|++++|.++|++
T Consensus 219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 999999999864 223444555554444433322221 11 44444444455566777778899999999999999999
Q ss_pred ccC--CCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh
Q 038522 293 MLK--TDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA 370 (590)
Q Consensus 293 ~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (590)
+.. ++..+++.++..+.+.|+ +++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 374 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSR-FIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV 374 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence 976 788999999999999999 999999999999765 4477889999999999999999999999998665 34788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 447 (590)
+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 89999999999999999999999876 3467799999999999999999999999999863 4578899999999999
Q ss_pred cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-------CCCCC--HhHHHHHHHHHHhcCC
Q 038522 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-------NIKPT--ASLWSAILGACSIYGN 518 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~ 518 (590)
.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999975 2446889999999999999999999999998 44777 6789999999999999
Q ss_pred chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 519 TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+++|+..++++++.+|+++.+|..++.+|...|++++|.++++++.+..+
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999988654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.8e-40 Score=341.72 Aligned_cols=479 Identities=10% Similarity=-0.011 Sum_probs=382.9
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038522 63 SNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRA 140 (590)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 140 (590)
++...|+.++..|.+.|++++|..+|+++.. |+..++..++.+|.+.|++++|+.+|+.+.. .+++..+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence 4566677777777777777777777766653 5666666677777777777777777776643 24666677777777
Q ss_pred HhccCchhhHHHHHHHHHh---------------cCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC---CcchHHH
Q 038522 141 CARMRWLQGGRMIQGSIQK---------------GRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK---DVVSWNA 202 (590)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 202 (590)
+.+.|++++|..+|+++.. .+.+++..+++.++.+|.+.|++++|.++|+++.+. +...+..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 7777777777777663211 133456788999999999999999999999988753 2334444
Q ss_pred HHHHHHhcCCchHHH--HH-HHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 038522 203 MIGGLAMQGFNDDSF--WL-FRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK 279 (590)
Q Consensus 203 li~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (590)
+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|+.+.+. +++..++..++.+|.+
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence 444333332222211 11 455555555556667777788899999999999999998766 6889999999999999
Q ss_pred cCChHHHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHH
Q 038522 280 YGSIRSAYQLYRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQI 356 (590)
Q Consensus 280 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 356 (590)
.|++++|.++|+++. ..+..+++.++..+.+.|+ +++|..+++++.... +.+..++..+...+.+.|++++|..+
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE-KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999984 3467789999999999999 999999999998653 55778889999999999999999999
Q ss_pred HHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522 357 HAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP 433 (590)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 433 (590)
++.+.+..+. +..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 396 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9999886543 67899999999999999999999999876 3477899999999999999999999999999863 44
Q ss_pred cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHH
Q 038522 434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILPR--AEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLW 506 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~ 506 (590)
+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..++..++.+|.+.|++++|.+.++++ .. +.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 78999999999999999999999999998653 45677 789999999999999999999999998 33 4478899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
..+..+|...|++++|.+.++++++++|+++.++..++.+|..
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.3e-26 Score=226.13 Aligned_cols=373 Identities=12% Similarity=0.064 Sum_probs=250.5
Q ss_pred HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchH
Q 038522 139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDD 215 (590)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 215 (590)
..+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+ .+..+|..+..++.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666666666666666542 23344555555566666666666666655432 234456666666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC
Q 038522 216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK 295 (590)
Q Consensus 216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 295 (590)
|.+.|+++.... +.+..++..+..++.+.|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~------------- 150 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGR------------- 150 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSC-------------
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC-------------
Confidence 666666665432 2223345555555555555555555555555443 2223334444444444444
Q ss_pred CCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHH
Q 038522 296 TDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNAL 375 (590)
Q Consensus 296 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 375 (590)
+++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+
T Consensus 151 -------------------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 209 (388)
T 1w3b_A 151 -------------------LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINL 209 (388)
T ss_dssp -------------------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 444444444444331 222344444455555555555555555555554332 45566777
Q ss_pred HHHHHhcCChHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCCh
Q 038522 376 IDMYAKSGEIADANRAFDEMG--DK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLT 451 (590)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 451 (590)
...+...|++++|...|++.. .| +..++..+...+...|++++|...|+++.+. .| +..++..+..++.+.|++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCH
Confidence 788888888888888888765 23 4667888889999999999999999999885 44 577888889999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038522 452 CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNL 529 (590)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 529 (590)
++|.+.++++.+. .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|+..++++
T Consensus 288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999875 3456788889999999999999999999988 4445 5678888999999999999999999999
Q ss_pred hcCCCCCcchHHHHHHHHHhcCC
Q 038522 530 FDMEPEKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 530 ~~~~p~~~~~~~~l~~~~~~~g~ 552 (590)
++..|+++.+|..++.++...|+
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999998887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.8e-26 Score=221.10 Aligned_cols=353 Identities=16% Similarity=0.098 Sum_probs=299.1
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 038522 204 IGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI 283 (590)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 283 (590)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 455677888888888888777652 2334455556666777888888888888877764 56777888889999999999
Q ss_pred HHHHHHHHhcc--CC-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchhhhHhHHHHHHH
Q 038522 284 RSAYQLYRSML--KT-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVASLNLGRQIHAF 359 (590)
Q Consensus 284 ~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~ 359 (590)
++|...|+++. .| +..+|..+...+...|+ +++|...|+++.+. .|+. ..+..+...+...|++++|...+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGD-MEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC-SSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999998883 34 34568888899999999 99999999998876 4544 4566677788889999999999999
Q ss_pred HHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cH
Q 038522 360 AFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-ND 435 (590)
Q Consensus 360 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~ 435 (590)
+.+..+. +...+..+...+.+.|++++|...|+++.+ | +...|..+...+...|++++|...+++..+. .| +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 9987644 577889999999999999999999999873 3 4567888999999999999999999999885 45 57
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHH
Q 038522 436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGA 512 (590)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 512 (590)
.++..+..++...|++++|.+.++++.+. .| +..++..+...+.+.|++++|.+.|+++ ..+++..++..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 88999999999999999999999999964 44 4778999999999999999999999998 335578899999999
Q ss_pred HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 513 CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 369 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999998754
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.7e-28 Score=242.78 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=168.5
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc---------hhhHHHHHHHHHhcCCCCchH
Q 038522 97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRW---------LQGGRMIQGSIQKGRFVENLF 167 (590)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 167 (590)
..++.+|++|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35778889999999999999999999999999999999999999886543 678899999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 038522 168 VKSALLDLYAKCGWIEDAWILFERIER----KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASV 243 (590)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 243 (590)
+|+.||++|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998864 7899999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 038522 244 GGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKY 280 (590)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 280 (590)
+.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.5e-28 Score=240.57 Aligned_cols=214 Identities=9% Similarity=0.092 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhc
Q 038522 113 ENALLVFSAMLRSGVRANQF-TYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFER 191 (590)
Q Consensus 113 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 191 (590)
..+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34556667777777765543 58889999999999999999999999999999999999999999887764321
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHH
Q 038522 192 IERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTG 271 (590)
Q Consensus 192 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (590)
...+..+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 1234457788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCChHHHHHHHHhc----cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhch
Q 038522 272 SLIDVYAKYGSIRSAYQLYRSM----LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANV 347 (590)
Q Consensus 272 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 347 (590)
.+|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|+ .++|.++|++|.+.|..|+..||+.++..++..
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~-~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN-ADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888877777777777 45677777777777777777 888888888888888888888888888887765
Q ss_pred hh
Q 038522 348 AS 349 (590)
Q Consensus 348 ~~ 349 (590)
+.
T Consensus 224 ~a 225 (501)
T 4g26_A 224 VA 225 (501)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-24 Score=217.55 Aligned_cols=440 Identities=9% Similarity=-0.065 Sum_probs=283.0
Q ss_pred cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 038522 97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLY 176 (590)
Q Consensus 97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 176 (590)
..|......+.+.|++++|+..|+++.+.. |+...+..+..++.+.|++++|...++.+.+.+ +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566677777888888888888887754 677777777777777777777777777777654 33445666666666
Q ss_pred HhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHH
Q 038522 177 AKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQ 253 (590)
Q Consensus 177 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 253 (590)
...|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------- 154 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK--------- 154 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh---------
Confidence 666666666666665543 12233333333333333333333333333322222222221111000000
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC-ccchHHHHHHHHh---cCCChHHHHHHHHHHHH--
Q 038522 254 IHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD-IISCTALISGFAR---DDNHSKEAFDLFKDMIL-- 327 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~-- 327 (590)
....|+...... +.......... ..+..|+ ...+......+.. .|+ +++|...|+++.+
T Consensus 155 -------~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~ 219 (514)
T 2gw1_A 155 -------QENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPES-YDKADESFTKAARLF 219 (514)
T ss_dssp ---------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTH-HHHHHHHHHHHHHHH
T ss_pred -------ccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHh
Confidence 001111111110 11000000000 0001111 2223333333333 566 8888888888776
Q ss_pred ---cCCCC--------CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522 328 ---KKMGI--------DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG 396 (590)
Q Consensus 328 ---~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (590)
....| +...+..+...+...|+++.|...++.+.+..+. ...+..+...|...|++++|...++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 31122 2345666777788888889999888888887655 7778888888999999999999888876
Q ss_pred C---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhH
Q 038522 397 D---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEH 473 (590)
Q Consensus 397 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 473 (590)
+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...
T Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 374 (514)
T 2gw1_A 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV 374 (514)
T ss_dssp TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH
T ss_pred hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHH
Confidence 3 355678888888999999999999999988752 335677888888889999999999999998865 2334677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-CCCC---C----HhHHHHHHHHHHh---cCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM-NIKP---T----ASLWSAILGACSI---YGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
+..+...+.+.|++++|...++++ ...| + ...+..+...+.. .|++++|...++++++..|.++.++..
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 454 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG 454 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 888888999999999999999887 2222 2 2378888888888 899999999999999999988889999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 543 LSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 543 l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
++.+|...|++++|.+.++++.+...
T Consensus 455 la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 455 LAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999998887654
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.2e-23 Score=213.57 Aligned_cols=448 Identities=10% Similarity=-0.069 Sum_probs=302.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038522 64 NLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRAC 141 (590)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 141 (590)
....+..+...+.+.|++++|+..|+++.+ |+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+...+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345677888999999999999999999875 888899999999999999999999999999864 34567888899999
Q ss_pred hccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchHHH
Q 038522 142 ARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER----KDVVSWNAMIGGLAMQGFNDDSF 217 (590)
Q Consensus 142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~ 217 (590)
...|++++|...++.+.+.+. ++......++..+........+.+.+..+.. ++...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 999999999999999998763 3444444445444443333333333322221 11111111111111111111122
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhcc
Q 038522 218 WLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK---YGSIRSAYQLYRSML 294 (590)
Q Consensus 218 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 294 (590)
.+...+......+. ... ...+.+...+......+.. .|++++|...|+++.
T Consensus 163 ~~~~~~~~~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 163 SMASFFGIFKPELT----------------FAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp HHHHHHTTSCCCCC----------------CSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHH----------------HHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 22111111111110 000 0001112222222222222 444555555444442
Q ss_pred C----------------C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHH
Q 038522 295 K----------------T-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIH 357 (590)
Q Consensus 295 ~----------------~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 357 (590)
. + +...+..+...+...|+ +++|...++++.+.. |+...+..+...+...|+++.|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND-PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 2 0 12345555566666666 777777777776653 33666666777777777777777777
Q ss_pred HHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc
Q 038522 358 AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN 434 (590)
Q Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 434 (590)
+.+.+..+. +...+..+...|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+
T Consensus 294 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 294 DKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 777665433 566778888899999999999999988752 356688888999999999999999999998752 335
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhc-CCCC-CHhH
Q 038522 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFAR---RGQLESAYNMIRQM-NIKP-TASL 505 (590)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~ 505 (590)
...+..+...+...|++++|...++++.+...-.++ ...+..+...+.. .|++++|.+.++++ ...| +..+
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 678888899999999999999999998865322222 3388899999999 99999999999998 3334 5678
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522 506 WSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS 544 (590)
Q Consensus 506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 544 (590)
+..+...+...|++++|...+++++++.|.++..+..+.
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 889999999999999999999999999998888877663
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=8.2e-23 Score=208.63 Aligned_cols=423 Identities=11% Similarity=0.017 Sum_probs=203.4
Q ss_pred ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHH
Q 038522 96 VVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDL 175 (590)
Q Consensus 96 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 175 (590)
...|..+...+.+.|++++|++.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456667777888888888888888887753 3456677777777778888888888888887764 4456677778888
Q ss_pred HHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHc------CCCCChhhHHHHHHHhccCCChh
Q 038522 176 YAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQ------GMKPDCFTLGSILRASVGGIELM 249 (590)
Q Consensus 176 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~ 249 (590)
+...|++++|...|+.+. .+....+..+..+...+....|...++.+... ...|+...... +....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence 888888888888886442 22222233344455555566777777777543 11233222222 22222222
Q ss_pred HHHHHHHHHHHhCCCCChh-HHHHHHHHHHhc--------CChHHHHHHHHhccCCCcc----------chHHHHHHHHh
Q 038522 250 KISQIHDLIIKLGLESSNK-LTGSLIDVYAKY--------GSIRSAYQLYRSMLKTDII----------SCTALISGFAR 310 (590)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~ 310 (590)
.+...+.... ...+... ....+...+... |++++|..+|+++...++. ++..+...+..
T Consensus 178 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 2221111110 0011111 222222222111 2445555555544322111 23333334444
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHH
Q 038522 311 DDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANR 390 (590)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 390 (590)
.++ +++|...+++..+. .|+...+..+...+...|+++.|...+..+.+..+. +.
T Consensus 256 ~~~-~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~--------------------- 310 (537)
T 3fp2_A 256 KNN-LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YP--------------------- 310 (537)
T ss_dssp TTC-HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CH---------------------
T ss_pred ccc-HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CH---------------------
Confidence 444 55555555554443 233344444444444444444444444444443322 23
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC
Q 038522 391 AFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR 470 (590)
Q Consensus 391 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 470 (590)
.+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+
T Consensus 311 ----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~ 377 (537)
T 3fp2_A 311 ----------PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTL 377 (537)
T ss_dssp ----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence 344444455555555555555555544431 112344444444555555555555555555443 1122
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-------CHhHHHHHHHHHHhc----------CCchHHHHHHHHHhcC
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-------TASLWSAILGACSIY----------GNTSLGELAARNLFDM 532 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 532 (590)
...+..+...+...|++++|.+.++++ ...| ....+......+... |++++|+..++++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 334444455555555555555555444 0000 111122223333344 5555555555555555
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 533 EPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 533 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.|+++.++..++.+|...|++++|.+.++++.+
T Consensus 458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555555555555555444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=8.6e-22 Score=196.25 Aligned_cols=343 Identities=11% Similarity=0.022 Sum_probs=253.0
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHH
Q 038522 196 DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLID 275 (590)
Q Consensus 196 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 275 (590)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 44567777788888888888888888887653 4456777777777888888888888888877765 445667777777
Q ss_pred HHHhcCChHHHHHHHHhccCCCc------cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhh
Q 038522 276 VYAKYGSIRSAYQLYRSMLKTDI------ISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVAS 349 (590)
Q Consensus 276 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 349 (590)
+|.+.|++++|...|+++...++ ..+..+...+.. ..+......+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHcCC
Confidence 77777777777777777643322 233333222110 011122334556677
Q ss_pred hHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038522 350 LNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKM 426 (590)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 426 (590)
++.|...++.+.+..+. +...+..+..+|.+.|++++|...|+++.+ .+..+|..+...+...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777665433 567778888888888999988888888763 46678888899999999999999999998
Q ss_pred HHcCCCCc-HHHHHHH------------HHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChH
Q 038522 427 KHEGMVPN-DVTFLSL------------LFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLE 488 (590)
Q Consensus 427 ~~~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~ 488 (590)
.+. .|+ ...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|+++
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 875 453 4444443 77888999999999999999875 444 447888899999999999
Q ss_pred HHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH------------HHhcC---
Q 038522 489 SAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI------------YTAAG--- 551 (590)
Q Consensus 489 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g--- 551 (590)
+|++.++++ ...| +...|..+..+|...|++++|...+++++++.|+++.++..++.+ |...|
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 999999998 4444 678899999999999999999999999999999999999999844 55556
Q ss_pred --ChHHHHHHHHH-hhhcCCcc
Q 038522 552 --AWDNARKTRKL-MEERSLRK 570 (590)
Q Consensus 552 --~~~~A~~~~~~-~~~~~~~~ 570 (590)
+.+++.+.+++ ..+..+..
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCC
Confidence 56677887776 44444433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.9e-21 Score=190.17 Aligned_cols=366 Identities=9% Similarity=0.016 Sum_probs=254.2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 038522 163 VENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSIL 239 (590)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 239 (590)
+.+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 45677899999999999999999999998764 467789999999999999999999999999875 44677888999
Q ss_pred HHhccCCChhHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChH
Q 038522 240 RASVGGIELMKISQIHDLIIKLGLESSN---KLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSK 316 (590)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (590)
..+.+.|++++|...++.+.+.. +.+. ..+..+...+...+. ..+...+...|+ ++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-------------------~~~a~~~~~~~~-~~ 160 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRL-------------------RSQALNAFGSGD-YT 160 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHTC-HH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHcCC-HH
Confidence 99999999999999999998754 3333 555555444222111 112223334455 55
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522 317 EAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG 396 (590)
Q Consensus 317 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (590)
+|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+..+ .+..++..+..+|...|++++|...|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5655555555432 23444555555556666666666666666555432 245566666777777777777777776664
Q ss_pred C--C-CcchHHHH------------HHHHHhcCCchHHHHHHHHHHHcCCCCc-----HHHHHHHHHHhhccCChHHHHH
Q 038522 397 D--K-NVISWTSL------------IAGYAKHGYGHEAIELYKKMKHEGMVPN-----DVTFLSLLFACSHTGLTCEGWE 456 (590)
Q Consensus 397 ~--~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~ 456 (590)
+ | +...+..+ ...+...|++++|...|+++.+. .|+ ...+..+..++.+.|++++|..
T Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 3 22233333 77888888999999999988874 454 3467777888888899999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHH------------HHhcC-----
Q 038522 457 LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGA------------CSIYG----- 517 (590)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~----- 517 (590)
.++++.+. .+.+...+..+..+|...|++++|.+.++++ ...|+ ...+..+..+ |...|
T Consensus 317 ~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 99888864 2335788888888999999999999999888 55664 4455555532 33333
Q ss_pred CchHHHHHHHH-HhcCCCCCcc----------hHHHHHHHHHhcCChHHH
Q 038522 518 NTSLGELAARN-LFDMEPEKSV----------NYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 518 ~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A 556 (590)
+.+++.+.+++ +++..|++.. .+..+..+|...|+.+.+
T Consensus 395 ~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 66788888886 6777775422 344555666666655443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.1e-20 Score=192.83 Aligned_cols=417 Identities=10% Similarity=-0.029 Sum_probs=277.9
Q ss_pred cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHH
Q 038522 30 PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGY 106 (590)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 106 (590)
...+..+...+.+.|++++|...|+.+++.. +.++.++..+..+|.+.|++++|+..|+++.+ .+..+|..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4567777778888888888888888888775 55777788888888888888888888887654 3456777777888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC------CCCchHHHHHHHHHHHhcC
Q 038522 107 AQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR------FVENLFVKSALLDLYAKCG 180 (590)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~ 180 (590)
...|++++|+..|+.+.. .|+.. ...+..+...+....+...++.+.... ..|+. ..+..+....
T Consensus 104 ~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~ 174 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF 174 (537)
T ss_dssp HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence 888888888888863321 22221 122334444555667777777775531 12322 2333445566
Q ss_pred ChHHHHHHHhccCCCCcc---hHHHHHHHHHh--------cCCchHHHHHHHHHHHcCCCCC--------hhhHHHHHHH
Q 038522 181 WIEDAWILFERIERKDVV---SWNAMIGGLAM--------QGFNDDSFWLFRSMMRQGMKPD--------CFTLGSILRA 241 (590)
Q Consensus 181 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~ll~~ 241 (590)
+.+.+...+......+.. ....+...+.. .|++++|..+++++.+. .|+ ..++..+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHH
Confidence 666666666665543332 22222222211 24677777777777654 333 2235555566
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHH
Q 038522 242 SVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML---KTDIISCTALISGFARDDNHSKEA 318 (590)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a 318 (590)
+...|+++.|...++.+.+.. |+...+..+...+...|++++|...|+++. ..+..++..+...+...|+ +++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-YKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHH
Confidence 677777888888887777764 336677777777777788888888777763 2345567777777777777 8888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-
Q 038522 319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD- 397 (590)
Q Consensus 319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 397 (590)
...+++..+.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+...+...|++++|...|+++.+
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 88888777653 234456777777778888888888888887776533 566777888888888999999888888752
Q ss_pred ----C----CcchHHHHHHHHHhc----------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHH
Q 038522 398 ----K----NVISWTSLIAGYAKH----------GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFT 459 (590)
Q Consensus 398 ----~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 459 (590)
+ ....+..+...+... |++++|...+++..+.. +.+...+..+...+...|++++|.+.|+
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 1 111244445667777 89999999999988752 3367788888889999999999999999
Q ss_pred HHHhh
Q 038522 460 DMINK 464 (590)
Q Consensus 460 ~~~~~ 464 (590)
+..+.
T Consensus 487 ~al~~ 491 (537)
T 3fp2_A 487 DSAIL 491 (537)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98865
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.6e-18 Score=166.78 Aligned_cols=320 Identities=11% Similarity=0.005 Sum_probs=169.8
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 038522 197 VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDV 276 (590)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 276 (590)
+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3456666777777777777777777776653 3345566666666666677777777776666653 3344555666666
Q ss_pred HHhcCChHHHHHHHHhccCCCc---c---chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhh
Q 038522 277 YAKYGSIRSAYQLYRSMLKTDI---I---SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASL 350 (590)
Q Consensus 277 ~~~~g~~~~a~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 350 (590)
+...|++++|...|+++...++ . .+..+. .... ...+......+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~------------------~~~~------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV------------------KADE------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH------------------HHHH------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH------------------HHHH------HHHHHHHHHHHHHccCH
Confidence 6666666666666655533222 1 111110 0000 00011122334444555
Q ss_pred HhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522 351 NLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMK 427 (590)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 427 (590)
+.|...++.+.+..+. +...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555554444322 344555555566666666666666655542 234455555566666666666666666655
Q ss_pred HcCCCC-cHHHHH------------HHHHHhhccCChHHHHHHHHHHHhhcCCCCC-h----hHHHHHHHHHHhcCChHH
Q 038522 428 HEGMVP-NDVTFL------------SLLFACSHTGLTCEGWELFTDMINKYRILPR-A----EHFSCVVDLFARRGQLES 489 (590)
Q Consensus 428 ~~g~~p-~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~ 489 (590)
+. .| +...+. .+...+...|++++|...++++.+. .|+ . ..+..+...+...|++++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 53 22 222221 1133455566666666666666543 222 1 123334555566666666
Q ss_pred HHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 490 AYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 490 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
|.+.+++. ...| +...+..+...+...|++++|...++++++++|+++.++..+..++.
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 66666655 2223 44555556666666666666666666666666655555555555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=1.6e-18 Score=166.81 Aligned_cols=306 Identities=11% Similarity=0.032 Sum_probs=237.3
Q ss_pred hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CccchHHHHHHH
Q 038522 232 CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML--KT-DIISCTALISGF 308 (590)
Q Consensus 232 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~ 308 (590)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++. .| +...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556667777888888888888888888765 4556777778888888888888888888773 23 445677777777
Q ss_pred HhcCCChHHHHHHHHHHHHcCCCC---CHH-HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC
Q 038522 309 ARDDNHSKEAFDLFKDMILKKMGI---DDV-ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGE 384 (590)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~~~p---~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 384 (590)
...|+ +++|...+++..+. .| +.. .+..+... . ....+..+...+...|+
T Consensus 82 ~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~----------------~~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 82 LKQGK-LDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------D----------------EMQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHTC-HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHHTTC
T ss_pred HHcCC-hHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------H----------------HHHHHHHHHHHHHHccC
Confidence 77887 88888888887754 34 221 11111110 0 01122345678889999
Q ss_pred hHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522 385 IADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM 461 (590)
Q Consensus 385 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 461 (590)
+++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998763 466788899999999999999999999999852 447888999999999999999999999999
Q ss_pred HhhcCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhc-CCCCCH-----hHHHHHHHHHHhcCCchHH
Q 038522 462 INKYRILPR-AEHFS------------CVVDLFARRGQLESAYNMIRQM-NIKPTA-----SLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 462 ~~~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~~~~~~a 522 (590)
.+. .|+ ...+. .+...+.+.|++++|.+.++++ ...|+. ..+..+...+...|++++|
T Consensus 215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 975 343 33332 2366789999999999999998 434443 2345577889999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999988654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=4.1e-18 Score=161.91 Aligned_cols=287 Identities=13% Similarity=0.056 Sum_probs=201.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038522 264 ESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLM 340 (590)
Q Consensus 264 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 340 (590)
+.+..++..+...+...|++++|.++|+++.. .+...+..+...+...++ +++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK-ANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh-HHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 33444455555555555666666666655521 223344445555555666 666666666665542 2234455555
Q ss_pred HHHHhchh-hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc
Q 038522 341 LNICANVA-SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYG 416 (590)
Q Consensus 341 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 416 (590)
...+...| +++.|...++.+.+..+. +...+..+...+...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 55566666 666666666666655432 455677788888888888888888887752 3456677788888889999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC-------CCCChhHHHHHHHHHHhcCChHH
Q 038522 417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR-------ILPRAEHFSCVVDLFARRGQLES 489 (590)
Q Consensus 417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~ 489 (590)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999888752 33677888888888899999999999988876421 12335688888999999999999
Q ss_pred HHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChH
Q 038522 490 AYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY-TAAGAWD 554 (590)
Q Consensus 490 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 554 (590)
|.+.++++ .. +.+...+..+...+...|++++|...++++++..|+++..+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999887 33 335677888888999999999999999999999999999999999888 4556543
No 16
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=9.5e-16 Score=160.92 Aligned_cols=251 Identities=10% Similarity=-0.006 Sum_probs=120.4
Q ss_pred ccccccccCChHHHHHHhhhC-CCCC---CCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522 3 IVRANFKTGQLKQALKFSLSC-PDTL---LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV 78 (590)
Q Consensus 3 l~~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 78 (590)
.+++|...|.+.+|+++|+++ .... -+....+.++.+..+. +.....+....+... ....+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhC
Confidence 457788899999999999998 2211 2334445555554444 334444433333211 122244455556
Q ss_pred CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522 79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ 158 (590)
Q Consensus 79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (590)
|.+++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++...|++++|...|...
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 666666666665431 1111111111 344455555554433 12444555555555555555555555332
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHH
Q 038522 159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG 236 (590)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 236 (590)
.|...|..++.++.+.|++++|.++|....+ ++....+.++.+|++.+++++..... . .++...+.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence 3344444455555555555555555544332 22222233455555555444322221 1 23334444
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 237 SILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM 293 (590)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 293 (590)
.+...|...|+++.|..+|... ..|..+...|.+.|+++.|.+.+++.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 4555555555555555555542 24445555555555555555555544
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=1.3e-17 Score=158.52 Aligned_cols=267 Identities=12% Similarity=0.052 Sum_probs=229.5
Q ss_pred CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHH
Q 038522 295 KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNA 374 (590)
Q Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (590)
..+...+..+...+...|+ +++|..+++++.... +.+...+..+...+...|+++.|...+..+.+..+. +...+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCD-FKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 3456677888888889999 999999999998764 344556667788889999999999999999987644 6778888
Q ss_pred HHHHHHhcC-ChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC
Q 038522 375 LIDMYAKSG-EIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL 450 (590)
Q Consensus 375 l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 450 (590)
+...+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 999999999 99999999998764 356689999999999999999999999999863 3345677778899999999
Q ss_pred hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC----------CCCHhHHHHHHHHHHhcCCc
Q 038522 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI----------KPTASLWSAILGACSIYGNT 519 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~ 519 (590)
+++|.+.++++.+. .+.+...+..+...+...|++++|...++++ .. +.+..++..+...+...|++
T Consensus 175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 99999999999864 2335788999999999999999999999887 11 33457889999999999999
Q ss_pred hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 520 SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 520 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
++|+..++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999887654
No 18
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=8e-15 Score=154.06 Aligned_cols=421 Identities=13% Similarity=0.097 Sum_probs=310.2
Q ss_pred CCcccHHHHHHHhhcccchhHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHH
Q 038522 28 LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGY--ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISG 105 (590)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 105 (590)
.++.--....+++...|.+.+|.++++..+-.+- ..+....+.++...++. +..+.....+....-+ ...+...
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence 3444556677888899999999999998884321 13456666677666665 4455555555554322 4457788
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 038522 106 YAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDA 185 (590)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 185 (590)
+...|.+++|..+|++.. -.....+.++. ..++++.|.++.+.. .+..+|..+..++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 889999999999999852 12222233332 667888888888755 3467888999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCC
Q 038522 186 WILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLES 265 (590)
Q Consensus 186 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 265 (590)
...|.+. .|...|..++.++.+.|++++|++.|...++.. +++...+.+..+|++.++++....+. + .+
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 9999775 577788899999999999999999999877654 44434445888899999888655543 1 44
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038522 266 SNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICA 345 (590)
Q Consensus 266 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 345 (590)
+...+..+...|...|++++|..+|... ..|..+...+++.|+ +++|.+.+++. .+..+|..+..+|.
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge-~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGE-YQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCC-HHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence 5667777999999999999999999986 489999999999999 99999999976 45688999999999
Q ss_pred chhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHH
Q 038522 346 NVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK---NVISWTSLIAGYAKHGYGHEAIEL 422 (590)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 422 (590)
..|++..|...... +..++..+..++..|.+.|.+++|+++++....- ....|+-+...+++. ++++.++.
T Consensus 1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy-~peklmEh 1335 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREH 1335 (1630)
T ss_pred hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC-CHHHHHHH
Confidence 99999888876543 3335667778999999999999999999987643 334666666666664 34555554
Q ss_pred HHHHHHcCC-CC------cHHHHHHHHHHhhccCChHHHHHH-------------HHHHHhhcCCCCChhHHHHHHHHHH
Q 038522 423 YKKMKHEGM-VP------NDVTFLSLLFACSHTGLTCEGWEL-------------FTDMINKYRILPRAEHFSCVVDLFA 482 (590)
Q Consensus 423 ~~~m~~~g~-~p------~~~~~~~ll~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (590)
++-..+.+- +| +...|.-+.-.|.+.|+++.|... |.+.. .-..++..|...+..|.
T Consensus 1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i---~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A 1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYL 1412 (1630)
T ss_pred HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh---cccccHHHHHHHHHHHH
Confidence 444444332 22 456788888889999999988732 22222 12446777777777777
Q ss_pred hcC---------------ChHHHHHHHHhcC
Q 038522 483 RRG---------------QLESAYNMIRQMN 498 (590)
Q Consensus 483 ~~g---------------~~~~A~~~~~~~~ 498 (590)
..+ +++++.++|.+.+
T Consensus 1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A 1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred hhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence 666 8888888888663
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.7e-16 Score=156.85 Aligned_cols=365 Identities=10% Similarity=0.003 Sum_probs=228.6
Q ss_pred cCChHHHHHHHhccCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----CCChh
Q 038522 179 CGWIEDAWILFERIER-KDVVSWNAMIGGLAM----QGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVG----GIELM 249 (590)
Q Consensus 179 ~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~ 249 (590)
.+++++|...|++..+ .+...+..|...|.. .+++++|.+.|++..+.| +...+..+...+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 4444444444444332 233344444444444 455555555555554432 23333333334433 44555
Q ss_pred HHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccC-CCccchHHHHHHHHh----cCCChHHHHH
Q 038522 250 KISQIHDLIIKLGLESSNKLTGSLIDVYAK----YGSIRSAYQLYRSMLK-TDIISCTALISGFAR----DDNHSKEAFD 320 (590)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~~a~~ 320 (590)
+|...|+...+.| +...+..|...|.. .++.++|.+.|++..+ .+...+..+...+.. .++ .++|..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~ 208 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERN-DAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC-HHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcC-HHHHHH
Confidence 5555555555443 23344444555544 4556666666655532 233444445555544 455 666777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc----hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHH
Q 038522 321 LFKDMILKKMGIDDVILCLMLNICAN----VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAF 392 (590)
Q Consensus 321 ~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~ 392 (590)
.|++..+.| +...+..+...+.. .++.+.|...++...+.+ ++..+..+..+|.. .+++++|..+|
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 776666543 33344444444443 566777777777666654 34455666667776 78899999998
Q ss_pred HhcCC-CCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC---ChHHHHHHHHHHHh
Q 038522 393 DEMGD-KNVISWTSLIAGYAKH-----GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG---LTCEGWELFTDMIN 463 (590)
Q Consensus 393 ~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~ 463 (590)
++..+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| ++++|.+.|++..+
T Consensus 283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~ 359 (490)
T 2xm6_A 283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA 359 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence 88764 4556777777888776 89999999999988864 3455666666666655 78899999999886
Q ss_pred hcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCC
Q 038522 464 KYRILPRAEHFSCVVDLFAR----RGQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 464 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 535 (590)
. .+...+..+...|.. .+++++|.++|++.-...++..+..+...|.. .+++++|...++++.+.+|+
T Consensus 360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 4 367788888888888 88999999999988222357778888888887 79999999999999988843
Q ss_pred ---CcchHHHHHHHHHhcCChHH--HHHHHHHh
Q 038522 536 ---KSVNYVVLSNIYTAAGAWDN--ARKTRKLM 563 (590)
Q Consensus 536 ---~~~~~~~l~~~~~~~g~~~~--A~~~~~~~ 563 (590)
++.+...++.++....+..+ |.+++++.
T Consensus 436 ~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~ 468 (490)
T 2xm6_A 436 LFGTENRNITEKKLTAKQLQQAELLSQQYIEKY 468 (490)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 77777777776654332222 44555443
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=8.8e-16 Score=155.76 Aligned_cols=412 Identities=8% Similarity=0.003 Sum_probs=270.0
Q ss_pred CHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHHHHH
Q 038522 130 NQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMIGGL 207 (590)
Q Consensus 130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~ 207 (590)
+...|..++.. .+.|+++.|..+++.+.+. .+.+...|..++..+.+.|++++|..+|++... |+...|..++...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 56677777773 6678888888888888876 355666788888888888888888888888765 5555666665432
Q ss_pred -HhcCCchHHHH----HHHHHHHc-CCCCC-hhhHHHHHHHhcc---------CCChhHHHHHHHHHHHhCCCCChhHHH
Q 038522 208 -AMQGFNDDSFW----LFRSMMRQ-GMKPD-CFTLGSILRASVG---------GIELMKISQIHDLIIKLGLESSNKLTG 271 (590)
Q Consensus 208 -~~~~~~~~a~~----~~~~m~~~-~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (590)
...|+.+.|.+ +|+..... |..|+ ...|...+....+ .|+++.|..+|+..++........+|.
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~ 169 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence 34567766655 55554432 44333 3344444443322 466777777777766521111112222
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHH------HcC---CCCCH--------
Q 038522 272 SLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI------LKK---MGIDD-------- 334 (590)
Q Consensus 272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~------~~~---~~p~~-------- 334 (590)
.........|. ..+..++. ...++ +..|..++++.. +.. +.|+.
T Consensus 170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~-~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 170 DYNKYEEGINI-HLAKKMIE-----------------DRSRD-YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHCH-HHHHHHHH-----------------TTHHH-HHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHhhch-hHHHHHHH-----------------HhhHH-HHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 22111100110 00111110 01223 555665555421 111 23331
Q ss_pred HHHHHHHHHHhc----hhhh----HhHHHHHHHHHHhCCCcchhHHHHHHHHHHh-------cCChH-------HHHHHH
Q 038522 335 VILCLMLNICAN----VASL----NLGRQIHAFAFKYQSSYDAAVGNALIDMYAK-------SGEIA-------DANRAF 392 (590)
Q Consensus 335 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~ 392 (590)
..|...+..... .++. ..+..+++.+....+ .++..+..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 233333322111 1122 356677888777643 367788888888775 68987 899999
Q ss_pred HhcCC---C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-H-HHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522 393 DEMGD---K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-D-VTFLSLLFACSHTGLTCEGWELFTDMINKYR 466 (590)
Q Consensus 393 ~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 466 (590)
++..+ | +...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 98874 3 4568888999999999999999999999984 564 3 47888888888999999999999999853
Q ss_pred CCCC-hhHHHHHHHH-HHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc----
Q 038522 467 ILPR-AEHFSCVVDL-FARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV---- 538 (590)
Q Consensus 467 ~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---- 538 (590)
.|+ ...+...+.. +...|++++|..+|++. ...| ++..|..++..+...|+.+.|..++++++...|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 443 3333332222 34689999999999988 3334 5788999999999999999999999999998876655
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 539 NYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
.|..++......|+.+.+.++.+++.+.-+
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 777888888899999999999999887554
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=9.3e-18 Score=162.16 Aligned_cols=283 Identities=11% Similarity=-0.023 Sum_probs=218.7
Q ss_pred HHhcCChHHHHH-HHHhccC--C-----CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchh
Q 038522 277 YAKYGSIRSAYQ-LYRSMLK--T-----DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVA 348 (590)
Q Consensus 277 ~~~~g~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 348 (590)
+.-.|++++|.. .|++... + +...+..+...+...|+ +++|...|+++.+.. +.+...+..+...+...|
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD-LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC-HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 334577788887 7776522 1 24567777888888888 888888888888763 445667778888888888
Q ss_pred hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHH---------------HHHHH
Q 038522 349 SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTS---------------LIAGY 410 (590)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~ 410 (590)
+++.|...++.+.+..+. +..++..+...|...|++++|...++++.+ | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999888888887643 677888888899999999999999988763 2 2222211 13334
Q ss_pred HhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522 411 AKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES 489 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (590)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+. .+.+...+..+...+...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999999863211 4788999999999999999999999999875 23357889999999999999999
Q ss_pred HHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-----------cchHHHHHHHHHhcCChHHH
Q 038522 490 AYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-----------SVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 490 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A 556 (590)
|.+.++++ ...| +...+..+...+...|++++|...+++++++.|++ +.+|..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998 4344 57789999999999999999999999999988876 78899999999999999999
Q ss_pred HHHHHHhh
Q 038522 557 RKTRKLME 564 (590)
Q Consensus 557 ~~~~~~~~ 564 (590)
..+++...
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99887543
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.5e-17 Score=156.58 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=110.6
Q ss_pred hcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHH
Q 038522 178 KCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDL 257 (590)
Q Consensus 178 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 257 (590)
+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677777777777544 3777777777777777777777754 35666777777777777777777776666
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 038522 258 IIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVIL 337 (590)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 337 (590)
.++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|. +++|..+|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~-yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKM-YDAAKLLYNNV---------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------C-TTTHHHHHHHT---------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCC-HHHHHHHHHHh---------hhH
Confidence 6653 34466677777778888887777766653 556677777777777777 77777777765 357
Q ss_pred HHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038522 338 CLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGH 417 (590)
Q Consensus 338 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 417 (590)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 77777777777777777777766 256777777777777777777766655544 33333445777777888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhh--ccCChHHHHHHHHHHHhhcCCCC------ChhHHHHHHHHHHhcCChHH
Q 038522 418 EAIELYKKMKHEGMVPNDVTFLSLLFACS--HTGLTCEGWELFTDMINKYRILP------RAEHFSCVVDLFARRGQLES 489 (590)
Q Consensus 418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~ 489 (590)
+|..+++...... +--...|+-+.-+++ +.++..+.++.|. ++-+++| +...|..++-.|..-++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 8888887776432 223334444433333 3333444444333 3224444 35567777888888888887
Q ss_pred HHHHHHh
Q 038522 490 AYNMIRQ 496 (590)
Q Consensus 490 A~~~~~~ 496 (590)
|...+-+
T Consensus 301 A~~tm~~ 307 (449)
T 1b89_A 301 AIITMMN 307 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7765543
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=6.5e-17 Score=152.26 Aligned_cols=220 Identities=12% Similarity=0.081 Sum_probs=53.4
Q ss_pred hcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522 77 KVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGS 156 (590)
Q Consensus 77 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 156 (590)
+.|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345555555555555333 25555555555555555555555431 3444555555555555555555555554
Q ss_pred HHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHH
Q 038522 157 IQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG 236 (590)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 236 (590)
.++. .++..+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 4442 23344555555556666665555555532 44445555555555555555555555544 2455
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChH
Q 038522 237 SILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSK 316 (590)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (590)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|. ++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~-~e 224 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY-FE 224 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC-HH
Confidence 5555555555555555555544 144455555555555555555544433322 122222234444555555 55
Q ss_pred HHHHHHHHHH
Q 038522 317 EAFDLFKDMI 326 (590)
Q Consensus 317 ~a~~~~~~~~ 326 (590)
+|..+++..+
T Consensus 225 Eai~lLe~aL 234 (449)
T 1b89_A 225 ELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=5.4e-15 Score=148.35 Aligned_cols=353 Identities=12% Similarity=0.003 Sum_probs=290.1
Q ss_pred CCcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----CCChhHHHHHHHHHHHhCCCCC
Q 038522 195 KDVVSWNAMIGGLAM----QGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVG----GIELMKISQIHDLIIKLGLESS 266 (590)
Q Consensus 195 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 266 (590)
.+...+..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...|+...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 466677777777777 899999999999998764 45667777777777 899999999999999876 5
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHHhccCC-CccchHHHHHHHHh----cCCChHHHHHHHHHHHHcCCCCCHHHH
Q 038522 267 NKLTGSLIDVYAK----YGSIRSAYQLYRSMLKT-DIISCTALISGFAR----DDNHSKEAFDLFKDMILKKMGIDDVIL 337 (590)
Q Consensus 267 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~ 337 (590)
...+..|...|.. .+++++|...|++..+. +...+..+...|.. .++ .++|+..|++..+.| +...+
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRD-YVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---CHHHH
Confidence 5667778888888 78999999999998544 45667777777776 667 999999999998875 56666
Q ss_pred HHHHHHHhc----hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCcchHHHHHH
Q 038522 338 CLMLNICAN----VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAFDEMGD-KNVISWTSLIA 408 (590)
Q Consensus 338 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~ 408 (590)
..+...+.. .++.+.|...++...+.+ ++..+..+...|.. .+++++|..+|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777766 789999999999998876 45677788888886 7899999999998764 46667777888
Q ss_pred HHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc-----CChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522 409 GYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT-----GLTCEGWELFTDMINKYRILPRAEHFSCVVD 479 (590)
Q Consensus 409 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 479 (590)
.+.. .+++++|+..|++..+.| +...+..+...+... +++++|...+++..+. + +...+..+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8887 899999999999998764 445666677777766 8999999999999875 2 4567778888
Q ss_pred HHHhcC---ChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh---
Q 038522 480 LFARRG---QLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA--- 549 (590)
Q Consensus 480 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 549 (590)
.|...| ++++|+++|++.-...++..+..+...|.. .+++++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888766 889999999998223567888899999888 899999999999999865 57899999999999
Q ss_pred -cCChHHHHHHHHHhhhcCCc
Q 038522 550 -AGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 550 -~g~~~~A~~~~~~~~~~~~~ 569 (590)
.+++++|.+++++..+.+..
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCC
Confidence 89999999999999987743
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=3.3e-17 Score=158.29 Aligned_cols=282 Identities=11% Similarity=-0.015 Sum_probs=196.5
Q ss_pred cccccCChHHHHH-HhhhCCCCC---C--CcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 038522 6 ANFKTGQLKQALK-FSLSCPDTL---L--DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG 79 (590)
Q Consensus 6 ~~~~~g~~~~a~~-~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (590)
++.-.|++++|+. .|++..... | +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455678899998 888772222 2 35678888999999999999999999999875 567888999999999999
Q ss_pred ChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHH---------------HHHH
Q 038522 80 DVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF-TYSS---------------ALRA 140 (590)
Q Consensus 80 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~---------------ll~~ 140 (590)
++++|...|+...+ .+..+|..+...+...|++++|++.++++.+.. |+.. .+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999988654 466788889999999999999999999998854 3322 2211 2333
Q ss_pred HhccCchhhHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHH
Q 038522 141 CARMRWLQGGRMIQGSIQKGRFVE-NLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDS 216 (590)
Q Consensus 141 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 216 (590)
+...|++++|...++.+.+..... +..++..+...|...|++++|...|+++.+ .+..+|..+...+...|++++|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 447788888888888887764321 466777788888888888888888777653 3456677777777788888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCC----------ChhHHHHHHHHHHhcCChHHH
Q 038522 217 FWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLES----------SNKLTGSLIDVYAKYGSIRSA 286 (590)
Q Consensus 217 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a 286 (590)
.+.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+..... ...++..+..+|...|+.++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 88887776653 3345666777777777777777777777776543111 145666677777777777777
Q ss_pred HHHHH
Q 038522 287 YQLYR 291 (590)
Q Consensus 287 ~~~~~ 291 (590)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 66654
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=6.8e-17 Score=149.35 Aligned_cols=268 Identities=9% Similarity=0.008 Sum_probs=181.5
Q ss_pred HhcCChHHHHHHHHhccCCCc----cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhH
Q 038522 278 AKYGSIRSAYQLYRSMLKTDI----ISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLG 353 (590)
Q Consensus 278 ~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 353 (590)
...|+++.|+..++.....++ .....+..++...|+ ++.|+..++.. -.|+..++..+...+...++.+.|
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~-~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRK-YGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTC-HHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCC-HHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence 344555555555444432221 122233445555555 55555444321 233444455555555555555555
Q ss_pred HHHHHHHHHhCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 038522 354 RQIHAFAFKYQSSY-DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV 432 (590)
Q Consensus 354 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 432 (590)
...++.+...+..| ++..+..+..++.+.|++++|.+.+++ ..+...+..++..+.+.|++++|...++++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 55555555544322 455566777889999999999999998 456778888999999999999999999999886 4
Q ss_pred CcHHHH---HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHH
Q 038522 433 PNDVTF---LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWS 507 (590)
Q Consensus 433 p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 507 (590)
|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ ...| ++.++.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 653221 12334444568999999999999976 3456888999999999999999999999997 4444 677888
Q ss_pred HHHHHHHhcCCchH-HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522 508 AILGACSIYGNTSL-GELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 508 ~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
.++..+...|+.++ +.+.++++++++|+++.+.. ...+.+.++++..-|
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 88888889999875 67899999999998876654 344555555555433
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.6e-17 Score=157.78 Aligned_cols=261 Identities=10% Similarity=-0.027 Sum_probs=208.2
Q ss_pred CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHH
Q 038522 297 DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALI 376 (590)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 376 (590)
+...+..+...+.+.|+ +++|...|+++++.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGD-LPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence 34457777788888888 888888888887753 445677788888888888888888888888877543 577888889
Q ss_pred HHHHhcCChHHHHHHHHhcCC--CC-----------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CcHHHHHHHH
Q 038522 377 DMYAKSGEIADANRAFDEMGD--KN-----------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV-PNDVTFLSLL 442 (590)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll 442 (590)
..|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 999999999999999988763 21 223344578889999999999999999986321 1588899999
Q ss_pred HHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCch
Q 038522 443 FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTS 520 (590)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 520 (590)
..+...|++++|.+.++++.+. .+.+..++..+..+|...|++++|++.|+++ ...| +..++..+...|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999975 2345789999999999999999999999998 4445 5788999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 521 LGELAARNLFDMEPE------------KSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 521 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
+|...+++++++.|. +...|..++.++...|+.+.|.+..+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999988875 367899999999999999999888765
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.6e-16 Score=155.80 Aligned_cols=385 Identities=11% Similarity=-0.036 Sum_probs=196.6
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHhccCC-----------C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcC----
Q 038522 164 ENLFVKSALLDLYAKCGWIEDAWILFERIER-----------K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQG---- 227 (590)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---- 227 (590)
.....|+.|...+...|+.++|++.|++..+ + ...+|+.+..+|...|++++|...+++.....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456788888888888888888887765421 1 23467777777777777777777777654320
Q ss_pred --CCC-ChhhHHHHHHHhc--cCCChhHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhcCChHHHHHHHHhcc--CC-
Q 038522 228 --MKP-DCFTLGSILRASV--GGIELMKISQIHDLIIKLGLESSNKLTGSLIDV---YAKYGSIRSAYQLYRSML--KT- 296 (590)
Q Consensus 228 --~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~--~~- 296 (590)
..+ ...++.....++. ..+++++|...|++..+.. +.++..+..+..+ +...++.++|++.+++.. .|
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 011 1233433333332 2345666666666666553 2233333333333 223344455555555442 12
Q ss_pred CccchHHHHHHHHh----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHH
Q 038522 297 DIISCTALISGFAR----DDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVG 372 (590)
Q Consensus 297 ~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (590)
+...+..+...+.. .++ .++|...+++..... +.+...+..+...+...|+++.|...+..+.+..+. +..++
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~-~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEE-EGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 22233333222222 123 445555555544432 223334444444555555555555555555444332 23333
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTC 452 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 452 (590)
..+...|...+....+ ..... ........+.++.|...+++..+.. +.+..++..+...+...|+++
T Consensus 285 ~~lg~~y~~~~~~~~~------~~~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMN------LRENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHHHHHHH------C------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhhh------HHHHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHH
Confidence 3333333211100000 00000 0000011223567888888877652 234556777888889999999
Q ss_pred HHHHHHHHHHhhcCCCCChh----HHHHHHH-HHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHH
Q 038522 453 EGWELFTDMINKYRILPRAE----HFSCVVD-LFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAA 526 (590)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 526 (590)
+|.+.|++..+. .|+.. .+..+.. .+...|++++|+..|++. .+.|+...... ....+..++
T Consensus 352 ~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHH
Confidence 999999998854 33322 2233333 235678999999999887 66676543322 234456778
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCCceEE
Q 038522 527 RNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFL 577 (590)
Q Consensus 527 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 577 (590)
++.++.+|.++.+|..|+.+|...|++++|++.+++..+.+...+...+|+
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 888899999999999999999999999999999999999877666666663
No 29
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.2e-14 Score=147.38 Aligned_cols=412 Identities=9% Similarity=0.034 Sum_probs=201.3
Q ss_pred CCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHHHHH
Q 038522 27 LLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTAMIS 104 (590)
Q Consensus 27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~ 104 (590)
|-+...|..++.. .+.|+++.|..+++.+++.. +.+...|...+..+.+.|++++|..+|++... |+...|...+.
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 3455566666663 55667777777777776653 45566677777777777777777777776554 55555555554
Q ss_pred HH-HhcCChHHHHH----HHHHHHHc-CCCC-CHhhHHHHHHHHhc---------cCchhhHHHHHHHHHhcCCCCchHH
Q 038522 105 GY-AQNGYDENALL----VFSAMLRS-GVRA-NQFTYSSALRACAR---------MRWLQGGRMIQGSIQKGRFVENLFV 168 (590)
Q Consensus 105 ~~-~~~~~~~~a~~----~~~~m~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~ 168 (590)
.. ...|+.+.|.+ +|++.... |..| +...|...+..... .|+++.|..+|+..++....+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 23455555544 45544432 3332 33444444444332 4556666666666655211111122
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH------HcC---CCCCh-------
Q 038522 169 KSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMM------RQG---MKPDC------- 232 (590)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~------- 232 (590)
|..........|. ..+..++. ...+++..|..++.++. +.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2221111000000 00111110 01233444554444421 111 22321
Q ss_pred -hhHHHHHHHhcc----CCCh----hHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCChH-------HHHHH
Q 038522 233 -FTLGSILRASVG----GIEL----MKISQIHDLIIKLGLESSNKLTGSLIDVYAK-------YGSIR-------SAYQL 289 (590)
Q Consensus 233 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~ 289 (590)
..|...+..... .++. ..+..+|++.+... +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 122222211111 1121 24445555555442 3345555555555543 45554 45555
Q ss_pred HHhccC---C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCC
Q 038522 290 YRSMLK---T-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQS 365 (590)
Q Consensus 290 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 365 (590)
|++... | +...|..++..+.+.|+ +++|..+|+++++. .|+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~-~~~A~~~~~~al~~--~p~~------------------------------- 354 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMK-YEKVHSIYNRLLAI--EDID------------------------------- 354 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHS--SSSC-------------------------------
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhCc--cccC-------------------------------
Confidence 555432 1 23344444444444554 55555555555442 2221
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHH-HHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHH
Q 038522 366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIA-GYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLS 440 (590)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 440 (590)
...+|..++..+.+.|++++|..+|++..+.++ ..|..... .+...|++++|..+|++..+. .| +...+..
T Consensus 355 --~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~ 430 (530)
T 2ooe_A 355 --PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLA 430 (530)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHH
T ss_pred --chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHH
Confidence 112445555555555555555555555543111 11111111 123467777777777777664 34 4666777
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
++..+.+.|+.++|..+|++........|+ ...|...+......|+.+.+..+++++
T Consensus 431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777777777754222332 336666677777777777777777766
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=1.3e-16 Score=151.25 Aligned_cols=258 Identities=11% Similarity=-0.085 Sum_probs=186.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 038522 302 TALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK 381 (590)
Q Consensus 302 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (590)
..+...+...++ +++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+...|..
T Consensus 25 ~~~a~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 25 MEEGLSMLKLAN-LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence 334444444454 555555555554432 223344444555555555555555555555554322 45556666777777
Q ss_pred cCChHHHHHHHHhcCC--C-CcchHHHH--------------HH-HHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522 382 SGEIADANRAFDEMGD--K-NVISWTSL--------------IA-GYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF 443 (590)
Q Consensus 382 ~~~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 443 (590)
.|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 7777777777776542 2 22222222 22 3677889999999999998863 346788899999
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHHHHHHHHhcCCchH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSAILGACSIYGNTSL 521 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~ 521 (590)
.+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++ ... .+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999999875 2335788999999999999999999999998 333 457788999999999999999
Q ss_pred HHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 522 GELAARNLFDMEPE------------KSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 522 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
|...++++++..|. ++..+..++.+|...|++++|..++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999997 688999999999999999999999886544
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.74 E-value=1.4e-16 Score=147.21 Aligned_cols=248 Identities=10% Similarity=-0.009 Sum_probs=202.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 038522 306 SGFARDDNHSKEAFDLFKDMILKKMGIDD--VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG 383 (590)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (590)
......|+ +..|+..++.... ..|+. .....+.+++...|+++.|...++. ..+|+...+..+...+...+
T Consensus 7 ~~~~~~g~-y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 7 KNAFYIGS-YQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHTTC-HHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHH-HHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556788 9999999887643 34544 3445677899999999999876543 24567888889999999999
Q ss_pred ChHHHHHHHHhcC----CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHH
Q 038522 384 EIADANRAFDEMG----DK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELF 458 (590)
Q Consensus 384 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 458 (590)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 445677778999999999999999987 457788889999999999999999999
Q ss_pred HHHHhhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522 459 TDMINKYRILPRAEH---FSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.++..++.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999976 455321 123344555669999999999999 445678889999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHH-HHHHHHHhhhcCCc
Q 038522 534 PEKSVNYVVLSNIYTAAGAWDN-ARKTRKLMEERSLR 569 (590)
Q Consensus 534 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~ 569 (590)
|+++.++..++.++...|+.++ +.++++++.+..+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999987 57899988876653
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.4e-16 Score=152.00 Aligned_cols=232 Identities=13% Similarity=0.020 Sum_probs=195.7
Q ss_pred CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHH
Q 038522 333 DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAG 409 (590)
Q Consensus 333 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 409 (590)
+...+......+.+.|+++.|..+++.+.+..+. +...+..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3445778888999999999999999999988654 688899999999999999999999998863 456789999999
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCcH-----------HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522 410 YAKHGYGHEAIELYKKMKHEGMVPND-----------VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV 478 (590)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 478 (590)
+...|++++|...++++.+. .|+. ..+..+...+...|++++|.+.++++.+.....++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999875 4432 2233457788899999999999999997632222578899999
Q ss_pred HHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522 479 DLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA 556 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 556 (590)
..|...|++++|++.++++ .. +.+..+|..+..++...|++++|+..++++++..|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 33 446788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC
Q 038522 557 RKTRKLMEERS 567 (590)
Q Consensus 557 ~~~~~~~~~~~ 567 (590)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1e-14 Score=146.00 Aligned_cols=382 Identities=9% Similarity=-0.052 Sum_probs=237.2
Q ss_pred CCHhhHHHHHHHHhccCchhhHHHHHHHHHhc-----C---CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC------
Q 038522 129 ANQFTYSSALRACARMRWLQGGRMIQGSIQKG-----R---FVENLFVKSALLDLYAKCGWIEDAWILFERIER------ 194 (590)
Q Consensus 129 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------ 194 (590)
.....|+.+-..+...|++++|.+.++...+. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888899999999999999987652 1 223456899999999999999999998877642
Q ss_pred -C----CcchHHHHHHHHHh--cCCchHHHHHHHHHHHcCCCCC-hhhHHHHHHH---hccCCChhHHHHHHHHHHHhCC
Q 038522 195 -K----DVVSWNAMIGGLAM--QGFNDDSFWLFRSMMRQGMKPD-CFTLGSILRA---SVGGIELMKISQIHDLIIKLGL 263 (590)
Q Consensus 195 -~----~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~ 263 (590)
+ ...++..+..++.. .+++++|++.|++..+. .|+ ...+..+... +...++.++|.+.++..++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 22345555555554 45789999999999876 454 3344333333 455678888999999988875
Q ss_pred CCChhHHHHHHHHHHh----cCChHHHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC-HH
Q 038522 264 ESSNKLTGSLIDVYAK----YGSIRSAYQLYRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGID-DV 335 (590)
Q Consensus 264 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~ 335 (590)
+.+..++..+...+.. .|++++|.+.+++.. ..+..++..+...+...++ +++|...+++..+. .|+ ..
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHh--CCChHH
Confidence 4455566555555544 467889999998873 3355678888999999999 99999999999876 444 34
Q ss_pred HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHh
Q 038522 336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAK 412 (590)
Q Consensus 336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 412 (590)
.+..+...+...+....... ...........+.++.|...+++.. ..+..++..+...+..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence 44444433322211111000 0001111112234567777777664 3456788999999999
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHH--HHHHHHH-HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVPNDV--TFLSLLF-ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES 489 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (590)
.|++++|++.|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+....... ...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDK 414 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHH
Confidence 999999999999999864333221 2222322 23477899999999999884 45654332222 233
Q ss_pred HHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522 490 AYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS 544 (590)
Q Consensus 490 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 544 (590)
+.+++++. ..+.++.+|..+...|...|++++|++.|+++++++|.+|.+...+|
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 34444444 22446789999999999999999999999999999998888776554
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=2.1e-15 Score=142.86 Aligned_cols=260 Identities=10% Similarity=-0.026 Sum_probs=208.4
Q ss_pred CcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHH
Q 038522 29 DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISG 105 (590)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 105 (590)
+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.+ .+..+|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 55677888899999999999999999999886 55788899999999999999999999998764 456788889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH--------------HH--HhccCchhhHHHHHHHHHhcCCCCchHHH
Q 038522 106 YAQNGYDENALLVFSAMLRSGVRANQFTYSSAL--------------RA--CARMRWLQGGRMIQGSIQKGRFVENLFVK 169 (590)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--------------~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 169 (590)
+...|++++|++.++++.+.. |+.......+ .. +...|++++|...++.+.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 999999999999999998753 3333222222 33 677889999999999998874 4467788
Q ss_pred HHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCC
Q 038522 170 SALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGI 246 (590)
Q Consensus 170 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 246 (590)
..+...|...|++++|...++++.+ .+...|..+...+...|++++|.+.+++..+.. +.+..++..+...+...|
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 8889999999999999999987753 356678888889999999999999999887763 345677788888888889
Q ss_pred ChhHHHHHHHHHHHhCCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 247 ELMKISQIHDLIIKLGLES-----------SNKLTGSLIDVYAKYGSIRSAYQLYRSM 293 (590)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 293 (590)
++++|...++.+.+..... +..++..+..++.+.|+.++|..+++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999998888887764321 4667778888888888888888887655
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=2.3e-15 Score=132.82 Aligned_cols=195 Identities=15% Similarity=0.056 Sum_probs=157.1
Q ss_pred CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHH
Q 038522 366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSL 441 (590)
Q Consensus 366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 441 (590)
++++..+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34666778888889999999999999998764 35568888999999999999999999999986 45 57788888
Q ss_pred HHHhhcc-----------CChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHH
Q 038522 442 LFACSHT-----------GLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSA 508 (590)
Q Consensus 442 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 508 (590)
..++... |++++|+..+++..+. .| +...+..+..+|...|++++|+..|+++ ....++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 9999999999999965 45 4778889999999999999999999998 22277888999
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+..++...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999987543
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.8e-17 Score=166.10 Aligned_cols=127 Identities=10% Similarity=0.071 Sum_probs=113.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCC-------CCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 038522 64 NLHLSTKVIIFYAKVGDVLSARKAFDRMP-------ERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSS 136 (590)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 136 (590)
-..+|+++|++|++.|++++|.++|++|. .||+.|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997753 49999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCch-hhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHh
Q 038522 137 ALRACARMRWL-QGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFE 190 (590)
Q Consensus 137 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 190 (590)
+|.++++.|+. +.|.+++++|.+.|+.||..+|+.+++...+.+-++.+.++..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 99999999985 7899999999999999999999999887766544444444433
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=165.12 Aligned_cols=127 Identities=14% Similarity=0.109 Sum_probs=108.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHhccC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522 163 VENLFVKSALLDLYAKCGWIEDAWILFERIE-------RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL 235 (590)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 235 (590)
..-..+|++||++||+.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345688889999999999999999886653 479999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCh-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 038522 236 GSILRASVGGIEL-MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL 289 (590)
Q Consensus 236 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 289 (590)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999998874 78899999999999999999999988777665444444444
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.7e-15 Score=133.34 Aligned_cols=218 Identities=13% Similarity=0.050 Sum_probs=168.2
Q ss_pred HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C----C----cchHHH
Q 038522 336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K----N----VISWTS 405 (590)
Q Consensus 336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~----~~~~~~ 405 (590)
.+..+...+...|+++.|..+++.+.+.. .+...+..+...|...|++++|...+++..+ | + ...|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555556666666666666666655 4566667777777777777777777776652 1 1 457777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhc
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARR 484 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 484 (590)
+...+...|++++|...+++..+. .|+.. .+...|++++|...++.+... .| +...+..+...+...
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHh
Confidence 888888889999999999888874 45533 355667889999999888853 34 466788888889999
Q ss_pred CChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 485 GQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 485 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
|++++|.+.++++ .. +.+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999888 33 345778888889999999999999999999999998999999999999999999999999998
Q ss_pred hhhcC
Q 038522 563 MEERS 567 (590)
Q Consensus 563 ~~~~~ 567 (590)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.5e-14 Score=131.75 Aligned_cols=232 Identities=9% Similarity=-0.049 Sum_probs=175.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--c----hhHHHH
Q 038522 301 CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--D----AAVGNA 374 (590)
Q Consensus 301 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~ 374 (590)
+..+...+...|+ +++|...|++..+.. .+...+..+...+...|+++.|...+..+.+..+.. + ..++..
T Consensus 8 ~~~~g~~~~~~~~-~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 8 EKAEGNKFYKARQ-FDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 4444555555566 666666666666554 555566666666666666666666666665543221 1 567788
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCCh
Q 038522 375 LIDMYAKSGEIADANRAFDEMGD--KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLT 451 (590)
Q Consensus 375 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~ 451 (590)
+...|.+.|++++|...|++..+ |+ ...+...|++++|...++++... .| +...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 88888999999999999988764 33 24466678899999999999874 45 566788888899999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038522 452 CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNL 529 (590)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 529 (590)
++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999875 2345788899999999999999999999998 3334 5778899999999999999999999999
Q ss_pred hcCC------CCCcchHHHHHHH
Q 038522 530 FDME------PEKSVNYVVLSNI 546 (590)
Q Consensus 530 ~~~~------p~~~~~~~~l~~~ 546 (590)
+++. |.+...+..+..+
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhChhhcCCCchHHHHHHHHHh
Confidence 9988 8777766666543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4.6e-14 Score=129.96 Aligned_cols=239 Identities=10% Similarity=-0.024 Sum_probs=185.4
Q ss_pred CCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHH
Q 038522 312 DNHSKEAFDLFKDMILKKMG---IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADA 388 (590)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 388 (590)
++ +++|+..++++.+.... .+...+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|
T Consensus 19 ~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 19 LQ-QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp HH-HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred ch-HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 45 78888888888765321 13456677777888888888888888888877644 677888899999999999999
Q ss_pred HHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhc
Q 038522 389 NRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKY 465 (590)
Q Consensus 389 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (590)
...|+++.+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999998763 35678899999999999999999999999885 565444445555567779999999999888875
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522 466 RILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 466 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 539 (590)
.+++... ..++..+...++.++|++.+++. ...|+ ...+..+...+...|++++|...++++++.+|.+..
T Consensus 174 -~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 2333333 34777788888999999999887 43342 567888999999999999999999999999996644
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 038522 540 YVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~ 560 (590)
..+.++...|++++|++.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 3467888999999998876
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.4e-13 Score=135.74 Aligned_cols=373 Identities=10% Similarity=0.014 Sum_probs=200.6
Q ss_pred HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh---HHHHHHHhccCCCCcchHHHHHHHHHhcC----
Q 038522 139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI---EDAWILFERIERKDVVSWNAMIGGLAMQG---- 211 (590)
Q Consensus 139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~---- 211 (590)
..+.+.|++++|..+|+...+.|. ...+..|...|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 334455666666666666665542 22233344455556666 77777777776556666666666555554
Q ss_pred -CchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCCh---hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----
Q 038522 212 -FNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIEL---MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI---- 283 (590)
Q Consensus 212 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 283 (590)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+......|. ......|...|...+.+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 5677888887777765322 444444444444332 233444444444442 34444555666666533
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHhcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHH
Q 038522 284 RSAYQLYRSMLKTDIISCTALISGFARDD---NHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFA 360 (590)
Q Consensus 284 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 360 (590)
+.+..+++.....++..+..+...+...| + .++|+..|++..+.| .++
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~-~~~A~~~~~~aa~~g-~~~--------------------------- 212 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQ-QAELLKQMEAGVSRG-TVT--------------------------- 212 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHTT-CSC---------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHHCC-CHH---------------------------
Confidence 33333444444444445555555555555 4 555666666555554 222
Q ss_pred HHhCCCcchhHHHHHHHHHHhc----CChHHHHHHHHhcCCCCcchHHHHHHH-H--HhcCCchHHHHHHHHHHHcCCCC
Q 038522 361 FKYQSSYDAAVGNALIDMYAKS----GEIADANRAFDEMGDKNVISWTSLIAG-Y--AKHGYGHEAIELYKKMKHEGMVP 433 (590)
Q Consensus 361 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p 433 (590)
...+..+..+|... +++++|..+|++....++..+..|... + ...+++++|+..|++..+.|
T Consensus 213 --------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 213 --------AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp --------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred --------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 22223344444332 567777777776662244556666555 3 35678888888888888765
Q ss_pred cHHHHHHHHHHhhccC-----ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCCCCCHh
Q 038522 434 NDVTFLSLLFACSHTG-----LTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLESAYNMIRQMNIKPTAS 504 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~ 504 (590)
+...+..+...|. .| ++++|.+.|++.. ..+......|...|.. ..++++|..+|++.-..-++.
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 4555555655555 44 7888888887775 2356666777777765 348888999988872223455
Q ss_pred HHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 505 LWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 505 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
....+...|.. ..+.++|...++++.+.++.........+......++.++|.++.++..+.
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 56666666653 458889999999988877633333333332233445777788887776663
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=5.8e-13 Score=131.42 Aligned_cols=378 Identities=10% Similarity=-0.010 Sum_probs=186.3
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCh---HHHHHHhccCCCCCccchHHHHHHHHhcC
Q 038522 34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDV---LSARKAFDRMPERNVVSWTAMISGYAQNG 110 (590)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~ 110 (590)
..+...+.+.|++++|.+.|+...+.| ++..+..|...|...|+. ++|...|+...+.+...+..|...+...+
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 345677788899999999999998876 445556667777778888 89999999887777777887877666655
Q ss_pred -----ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchh---hHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 111 -----YDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQ---GGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 111 -----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
++++|+..|++..+.|.. ..+..+...+...+... .+.+.+......| +......|...|...+.+
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 778999999999887632 25555555555544433 3344444444444 234555566666666643
Q ss_pred ----HHHHHHHhccCCCCcchHHHHHHHHHhcC---CchHHHHHHHHHHHcCCCCChhhHHHHHHHhccC----CChhHH
Q 038522 183 ----EDAWILFERIERKDVVSWNAMIGGLAMQG---FNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGG----IELMKI 251 (590)
Q Consensus 183 ----~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a 251 (590)
+++..+++.....+...+..|...+...| +.++|++.|++..+.| .++...+..+...|... ++.++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 34444555555555667777777777777 6777777777776665 33443333444444332 455555
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038522 252 SQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMG 331 (590)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~ 331 (590)
...|+... +-+...+..|...|.. ....++ +++|+..|++..+.|
T Consensus 237 ~~~~~~aa----~g~~~a~~~Lg~~~~~----------------------------~~~~~d-~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 237 QALLEKIA----PGYPASWVSLAQLLYD----------------------------FPELGD-VEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHHHHHG----GGSTHHHHHHHHHHHH----------------------------SGGGCC-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHc----CCCHHHHHHHHHHHHh----------------------------CCCCCC-HHHHHHHHHHHHHCC--
Confidence 55555544 2223333333333110 022344 566666666655544
Q ss_pred CCHHHHHHHHHHHhchh-----hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCcc
Q 038522 332 IDDVILCLMLNICANVA-----SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAFDEMGD-KNVI 401 (590)
Q Consensus 332 p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~ 401 (590)
+......+-..+. .| +.++|...++... . -++..+..|..+|.. ..++++|..+|++..+ .+..
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 2222222222222 12 3444444444333 1 133333444444443 2356666666655443 2344
Q ss_pred hHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522 402 SWTSLIAGYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 402 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (590)
....|...|.. .+++.+|..+|+...+.|. ++.......+......++..+|..+.++..+
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44455554443 2356666666666665542 2222222222222333444555555555443
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.3e-13 Score=125.04 Aligned_cols=198 Identities=9% Similarity=-0.040 Sum_probs=164.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522 369 AAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445 (590)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 445 (590)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 55667777888888888888888887752 356678888888999999999999999988763 33677888888889
Q ss_pred hccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHH
Q 038522 446 SHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 522 (590)
...|++++|.+.++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998862 3455 3667788888999999999999999887 3334 577788888999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
...++++++..|.++..+..++.+|...|++++|.++++++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999998889999999999999999999999999887654
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=1.7e-13 Score=125.84 Aligned_cols=243 Identities=12% Similarity=-0.002 Sum_probs=135.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc--CC-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038522 270 TGSLIDVYAKYGSIRSAYQLYRSML--KT-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICAN 346 (590)
Q Consensus 270 ~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 346 (590)
.......+...|++++|...|+++. .| +...+..+...+...|+ +++|+..+++..+.+ ++...
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~--~~~~~---------- 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-YDLAQKDIETYFSKV--NATKA---------- 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC-HHHHHHHHHHHHTTS--CTTTC----------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcc--CchhH----------
Confidence 3344555566666666666666552 22 23355555555555555 666666666555422 11111
Q ss_pred hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHH
Q 038522 347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELY 423 (590)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 423 (590)
....+..+...|...|++++|...|++..+ .+...|..+...+...|++++|+..+
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 122344555555555666666665555442 23345556666666666666666666
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCC---hHHHHHHHHhc-
Q 038522 424 KKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQ---LESAYNMIRQM- 497 (590)
Q Consensus 424 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~- 497 (590)
++..+. .| +...+..+...+...+++++|.+.++++.+. .|+ ...+..+...+...|+ +++|...++++
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 666553 33 3444444442333334666666666666654 232 4555556666666665 55566666555
Q ss_pred ---CCCCCH------hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 498 ---NIKPTA------SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 498 ---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
...|+. .++..+...|...|++++|...++++++++|+++.++..+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 112331 456677778888888888888888888888888888877766655443
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=4.2e-14 Score=127.49 Aligned_cols=198 Identities=9% Similarity=0.070 Sum_probs=138.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 444 (590)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 455566667777777888888888877653 345577777788888888888888888887752 3356777778888
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHH
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 522 (590)
+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ .. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888765 2335667777888888888888888888887 32 33566777888888888888888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+..++++++..|.++.++..++.+|...|++++|.+.++++.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888888888888888888888888888888888888877553
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=2.4e-13 Score=120.88 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=162.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 444 (590)
++..+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456667778888888888888888887652 345678888888889999999999999988752 3367788888888
Q ss_pred hhcc-CChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCch
Q 038522 445 CSHT-GLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTS 520 (590)
Q Consensus 445 ~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 520 (590)
+... |++++|...++++.+. +..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8899 9999999999998862 33444 567888888899999999999999887 3334 5777888888899999999
Q ss_pred HHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 521 LGELAARNLFDMEP-EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 521 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+|...++++++..| .++..+..++.++...|+.++|..+++.+.+..+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 99999999999999 8888888888899999999999999998876543
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.2e-12 Score=120.34 Aligned_cols=220 Identities=11% Similarity=-0.034 Sum_probs=158.3
Q ss_pred HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCcchHHHHHHHHH
Q 038522 337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAFDEMGD-KNVISWTSLIAGYA 411 (590)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~ 411 (590)
+..+...+...+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .+...+..+...+.
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 85 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY 85 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3334444444455555555555554421 33455566666777 7777777777776653 35566777777777
Q ss_pred h----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc----cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 038522 412 K----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH----TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR 483 (590)
Q Consensus 412 ~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 483 (590)
. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+...|..
T Consensus 86 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 86 SGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDA 158 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHc
Confidence 7 888888888888887764 56677777777777 88888888888888764 3 55667777777777
Q ss_pred ----cCChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cC
Q 038522 484 ----RGQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA----AG 551 (590)
Q Consensus 484 ----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g 551 (590)
.+++++|++.|++.-...++..+..+...+.. .+++++|+..++++.+.+| +.++..++.+|.. .|
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~ 236 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTR 236 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCccc
Confidence 88888888888887112345677778888888 8888889988888888866 6778888888888 88
Q ss_pred ChHHHHHHHHHhhhcCC
Q 038522 552 AWDNARKTRKLMEERSL 568 (590)
Q Consensus 552 ~~~~A~~~~~~~~~~~~ 568 (590)
++++|.+++++..+.+.
T Consensus 237 ~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 237 NEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CSTTHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 88999988888877664
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=3.5e-13 Score=123.80 Aligned_cols=226 Identities=10% Similarity=-0.030 Sum_probs=176.2
Q ss_pred HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcc----hHHHHHHHHHh
Q 038522 339 LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVI----SWTSLIAGYAK 412 (590)
Q Consensus 339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~ 412 (590)
.....+...|+++.|...++.+.+..+. +...+..+...|...|++++|...+++..+ ++.. .|..+...+..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3344455556666666666665554432 445667788888999999999999988764 2332 38889999999
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAY 491 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 491 (590)
.|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+. .| +...+..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999852 335678899999999999999999999999853 45 4667777773455566999999
Q ss_pred HHHHhc-CCCC-CHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCC---CCC-----cchHHHHHHHHHhcCChHHHHH
Q 038522 492 NMIRQM-NIKP-TASLWSAILGACSIYGN---TSLGELAARNLFDME---PEK-----SVNYVVLSNIYTAAGAWDNARK 558 (590)
Q Consensus 492 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~ 558 (590)
+.|+++ ...| +...+..+...+...|+ +++|...++++++.. |+. ..+|..++.+|...|++++|.+
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998 4445 46777888888888888 899999999999765 532 2578889999999999999999
Q ss_pred HHHHhhhcCCc
Q 038522 559 TRKLMEERSLR 569 (590)
Q Consensus 559 ~~~~~~~~~~~ 569 (590)
.++++.+..+.
T Consensus 243 ~~~~al~~~p~ 253 (272)
T 3u4t_A 243 AWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCcc
Confidence 99999886653
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1e-13 Score=124.96 Aligned_cols=213 Identities=11% Similarity=0.030 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 038522 335 VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYA 411 (590)
Q Consensus 335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 411 (590)
..+..+...+...|+++.|...++.+.+..+. +...+..+...+...|++++|...++++.+ .+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 33444455555666666666666666554332 466677788888888888888888887652 35667888889999
Q ss_pred hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 038522 412 KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAY 491 (590)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (590)
..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998863 446778888889999999999999999999875 2345778888999999999999999
Q ss_pred HHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 492 NMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 492 ~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
+.++++ .. +.+..++..+...+...|++++|...++++++..|+++.++..++.+....|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 999988 33 3457788999999999999999999999999999999988888776655444
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=2.9e-13 Score=116.10 Aligned_cols=166 Identities=17% Similarity=0.127 Sum_probs=141.6
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHH
Q 038522 399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCV 477 (590)
Q Consensus 399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 477 (590)
+...|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4557888888888899999999999998875 45 6778888888999999999999999998865 23346677778
Q ss_pred HHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522 478 VDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN 555 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 555 (590)
...+...++++.|.+.+.+. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88889999999999999887 3334 567888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCC
Q 038522 556 ARKTRKLMEERSL 568 (590)
Q Consensus 556 A~~~~~~~~~~~~ 568 (590)
|++.+++..+..+
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887653
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.54 E-value=1.2e-12 Score=118.58 Aligned_cols=204 Identities=10% Similarity=0.001 Sum_probs=157.6
Q ss_pred HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHh
Q 038522 336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAK 412 (590)
Q Consensus 336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 412 (590)
.+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|...++++.+ .+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 3444445555566666666666665554322 456677778888888888888888887652 355678888888999
Q ss_pred cCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAY 491 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 491 (590)
.|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999988743455 5667888888899999999999999999875 1335778888999999999999999
Q ss_pred HHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 492 NMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 492 ~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
..++++ .. +.+...+..+...+...|++++|.+.++++.+..|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999988 43 3456678888888999999999999999999999977766543
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=3.9e-13 Score=123.66 Aligned_cols=219 Identities=13% Similarity=-0.019 Sum_probs=181.8
Q ss_pred hchhhhHhHHHHHHHHHHhCC---CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchH
Q 038522 345 ANVASLNLGRQIHAFAFKYQS---SYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHE 418 (590)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 418 (590)
...++++.|...++.+.+... +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 456899999999999988643 22577888899999999999999999998763 457789999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522 419 AIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM- 497 (590)
Q Consensus 419 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 497 (590)
|...++++.+.. +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999862 336788899999999999999999999999965 555544555555667789999999999877
Q ss_pred -CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 498 -NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE----KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 498 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
..+++...+ .++..+...++.++|...++++++..|. ++..+..++.+|...|++++|.+.++++.+..+
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 334444444 4667777888899999999999988773 368899999999999999999999999988653
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=1.1e-12 Score=125.08 Aligned_cols=224 Identities=10% Similarity=0.059 Sum_probs=177.7
Q ss_pred HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC-hHHHHHHHHhcCC---CCcchHHHHHHHHHh
Q 038522 337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGE-IADANRAFDEMGD---KNVISWTSLIAGYAK 412 (590)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 412 (590)
+..+...+...|+++.|...++.+++..+. +...++.+..++...|+ +++|+..|+++.+ .+...|..+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 333444444555555666665555555433 56677788888888886 9999999988773 356788889999999
Q ss_pred cCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHh-cCChHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFAR-RGQLES 489 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~ 489 (590)
.|++++|+..|+++++. .| +...|..+..++...|++++|+..++++.+. .| +...|+.+..++.+ .|..++
T Consensus 179 ~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred ccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999985 45 6788999999999999999999999999975 44 57889999999988 666577
Q ss_pred H-----HHHHHhc-CCCC-CHhHHHHHHHHHHhcC--CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---------
Q 038522 490 A-----YNMIRQM-NIKP-TASLWSAILGACSIYG--NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG--------- 551 (590)
Q Consensus 490 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 551 (590)
| ++.++++ .+.| +...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|...|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4778777 4455 5678888888888888 699999999998 999999999999999999875
Q ss_pred ChHHHHHHHHHh-hhcC
Q 038522 552 AWDNARKTRKLM-EERS 567 (590)
Q Consensus 552 ~~~~A~~~~~~~-~~~~ 567 (590)
.+++|+++++++ .+..
T Consensus 333 ~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 333 ILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 358999999998 5544
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=2.7e-12 Score=122.47 Aligned_cols=243 Identities=12% Similarity=0.102 Sum_probs=190.0
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhh-hHhHHHHHHHHHHhCCCcchhHHHHHHHH
Q 038522 300 SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVAS-LNLGRQIHAFAFKYQSSYDAAVGNALIDM 378 (590)
Q Consensus 300 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (590)
.|..+...+...++ +++|+..+++.+... +-+...|..+..++...|+ ++.|...++.+++..+. +...|..+..+
T Consensus 99 a~~~lg~~~~~~g~-~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDER-SERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCC-CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-hHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 45555566666666 777777777777652 2344556666667777775 88888888887777655 67788888888
Q ss_pred HHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhc-cCChHH
Q 038522 379 YAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSH-TGLTCE 453 (590)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~~~~~~ 453 (590)
+.+.|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++. .| +...|..+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998873 46678899999999999999999999999986 45 67888888888888 566577
Q ss_pred H-----HHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcC--ChHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcC-------
Q 038522 454 G-----WELFTDMINKYRILP-RAEHFSCVVDLFARRG--QLESAYNMIRQMNIKP-TASLWSAILGACSIYG------- 517 (590)
Q Consensus 454 a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------- 517 (590)
| ++.+++..+. .| +...|..+..++...| ++++|++.++++...| +...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 4888888864 45 4678888888888888 6899999998884444 5567788888888764
Q ss_pred --CchHHHHHHHHH-hcCCCCCcchHHHHHHHHHhc
Q 038522 518 --NTSLGELAARNL-FDMEPEKSVNYVVLSNIYTAA 550 (590)
Q Consensus 518 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 550 (590)
.+++|+++++++ .+++|.....|..++..+..+
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 999999999999988877654
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=2.4e-12 Score=114.24 Aligned_cols=206 Identities=11% Similarity=-0.035 Sum_probs=159.2
Q ss_pred HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 038522 335 VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYA 411 (590)
Q Consensus 335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 411 (590)
..+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|...++++.+ .+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34445555566666666666666666655432 456677788888888888888888887752 35667888888999
Q ss_pred hc-CCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522 412 KH-GYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES 489 (590)
Q Consensus 412 ~~-~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 489 (590)
.. |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence 99 99999999999998743345 3677888888999999999999999999875 23347788889999999999999
Q ss_pred HHHHHHhc-CC-C-CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522 490 AYNMIRQM-NI-K-PTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL 543 (590)
Q Consensus 490 A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 543 (590)
|.+.++++ .. + .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999988 33 3 4566777777788899999999999999999999887766544
No 56
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=2.1e-13 Score=135.44 Aligned_cols=209 Identities=8% Similarity=-0.026 Sum_probs=174.9
Q ss_pred hHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCh-HHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHH
Q 038522 350 LNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI-ADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKK 425 (590)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 425 (590)
++.+...+....... +.+...+..+...|...|++ ++|+..|++..+ | +...|..+...|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433322 23667778888888888999 999999988763 3 467889999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHhhcc---------CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc--------CChH
Q 038522 426 MKHEGMVPNDVTFLSLLFACSHT---------GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR--------GQLE 488 (590)
Q Consensus 426 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 488 (590)
..+. .|+...+..+...+... |++++|.+.+++..+. .+.+...+..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 68888888899999999 9999999999999975 233578889999999998 9999
Q ss_pred HHHHHHHhc-CCCC----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522 489 SAYNMIRQM-NIKP----TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 489 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
+|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|+++.++..++.++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999998 5455 67889999999999999999999999999999999999999999999999999999765544
No 57
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=1.2e-12 Score=115.22 Aligned_cols=189 Identities=15% Similarity=0.077 Sum_probs=114.8
Q ss_pred HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 038522 336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAK 412 (590)
Q Consensus 336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 412 (590)
.+..+...+...|++++|...++.+.+..+. ++..+..+...+.+.|++++|...|++..+ | +...+..+...+..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333444444444444444444444443322 445555666666666666666666666542 3 34456666666666
Q ss_pred c-----------CCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522 413 H-----------GYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL 480 (590)
Q Consensus 413 ~-----------~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 480 (590)
. |++++|+..+++..+. .| +...+..+..++...|++++|+..|++..+. . .+...+..+..+
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 86 LYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAEL 160 (217)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHH
T ss_pred hhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHH
Confidence 6 8888888888887774 45 4667777777788888888888888888776 4 567777788888
Q ss_pred HHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 481 FARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
|...|++++|+..|+++ ...| +...+..+...+...|++++|+..++++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 88888888888888877 3334 55667777778888888888888777654
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=2.7e-13 Score=132.88 Aligned_cols=229 Identities=14% Similarity=0.040 Sum_probs=152.5
Q ss_pred HHHHHHHHhchhhhHhHHHHHHHHHHh----C-CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----C----Ccch
Q 038522 337 LCLMLNICANVASLNLGRQIHAFAFKY----Q-SSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-----K----NVIS 402 (590)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~ 402 (590)
+..+...+...|+++.|...++.+.+. + .......+..+...|...|++++|...+++..+ . ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 333344444444444444444443332 1 111344556666677777777777777766542 1 1235
Q ss_pred HHHHHHHHHhcCC-----------------chHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHH
Q 038522 403 WTSLIAGYAKHGY-----------------GHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTD 460 (590)
Q Consensus 403 ~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 460 (590)
+..+...+...|+ +++|++.+++..+. +..| ...++..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 6667777777777 77777777765442 1112 234677777888888999999998888
Q ss_pred HHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-------CHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522 461 MINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-------TASLWSAILGACSIYGNTSLGELAARN 528 (590)
Q Consensus 461 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 528 (590)
..+...-.++ ...+..+...|...|++++|.+.+++. ...| ...++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7754211112 236778888899999999999988876 1111 145677788888899999999999999
Q ss_pred HhcCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 529 LFDMEPE------KSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 529 ~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+++..+. ...++..++.+|...|++++|.+++++..+
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9876542 244788899999999999999999998865
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=6e-13 Score=130.13 Aligned_cols=293 Identities=12% Similarity=0.029 Sum_probs=155.9
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhcc--CCC-----ccchHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC
Q 038522 264 ESSNKLTGSLIDVYAKYGSIRSAYQLYRSML--KTD-----IISCTALISGFARDDNHSKEAFDLFKDMILK----KMGI 332 (590)
Q Consensus 264 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~~~p 332 (590)
......+......+...|++++|...|++.. .|+ ...+..+...+...|+ +++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhccccH
Confidence 3344455666777788888888888887773 222 1356666677777777 88888887776542 1111
Q ss_pred C-HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC-----cchhHHHHHHHHHHhcCC--------------------hH
Q 038522 333 D-DVILCLMLNICANVASLNLGRQIHAFAFKYQSS-----YDAAVGNALIDMYAKSGE--------------------IA 386 (590)
Q Consensus 333 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~ 386 (590)
. ...+..+...+...|+++.|...+....+.... ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 1 234445555666666666666666655442111 113355555666666666 66
Q ss_pred HHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCc----HHHHHHHHHHhhccCChH
Q 038522 387 DANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VPN----DVTFLSLLFACSHTGLTC 452 (590)
Q Consensus 387 ~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~ 452 (590)
+|...+++..+ ++ ..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 66655554431 11 12455555556666666666666665543200 011 124555555555666666
Q ss_pred HHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-C---CCCC----HhHHHHHHHHHHhcCCch
Q 038522 453 EGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-N---IKPT----ASLWSAILGACSIYGNTS 520 (590)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~ 520 (590)
+|...+++..+...-.++ ..++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 666666655432111111 334455555566666666666665554 1 0111 234455555555666666
Q ss_pred HHHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHH
Q 038522 521 LGELAARNLFDMEPEKS------VNYVVLSNIYTAAGAWDNAR 557 (590)
Q Consensus 521 ~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 557 (590)
+|...+++++++.+... .++..++.+|...|+...+.
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 66666666666655442 23444555555555544433
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=9.7e-12 Score=114.14 Aligned_cols=218 Identities=10% Similarity=-0.028 Sum_probs=154.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 038522 304 LISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICAN----VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMY 379 (590)
Q Consensus 304 l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 379 (590)
+...+...++ +++|...|++..+. .+...+..+...+.. .+++++|...++...+.+ ++..+..+...|
T Consensus 12 lg~~~~~~~~-~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 12 LGAKSYKEKD-FTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 3334444444 55555555544441 122333444444444 555555555555555544 455666677777
Q ss_pred Hh----cCChHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc---
Q 038522 380 AK----SGEIADANRAFDEMGD-KNVISWTSLIAGYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH--- 447 (590)
Q Consensus 380 ~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--- 447 (590)
.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 161 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG 161 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred hCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence 77 7888888888877653 356677778888888 889999999999988865 45566667777776
Q ss_pred -cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHh----cC
Q 038522 448 -TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLESAYNMIRQM-NIKPTASLWSAILGACSI----YG 517 (590)
Q Consensus 448 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~ 517 (590)
.+++++|...+++..+. .+...+..+...|.. .+++++|++.|++. ...| ...+..+...|.. .+
T Consensus 162 ~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~ 236 (273)
T 1ouv_A 162 TPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTR 236 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSC
T ss_pred CCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCccc
Confidence 88999999999998864 246777888888988 99999999999988 3333 6677888888888 89
Q ss_pred CchHHHHHHHHHhcCCCCC
Q 038522 518 NTSLGELAARNLFDMEPEK 536 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~ 536 (590)
++++|...++++.+.+|++
T Consensus 237 ~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 237 NEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CSTTHHHHHHHHHHHTCHH
T ss_pred CHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998843
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=7.9e-13 Score=125.49 Aligned_cols=231 Identities=14% Similarity=0.068 Sum_probs=158.8
Q ss_pred HHHHHHHHhchhhhHhHHHHHHHHHHh----CCC-cchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----cch
Q 038522 337 LCLMLNICANVASLNLGRQIHAFAFKY----QSS-YDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN----VIS 402 (590)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~ 402 (590)
+..+...+...|+++.|...+....+. +.. ....++..+...|...|++++|...+++..+ ++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444445555555544443321 111 1244556677777777888888777776542 22 226
Q ss_pred HHHHHHHHHhcCC--------------------chHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHH
Q 038522 403 WTSLIAGYAKHGY--------------------GHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWEL 457 (590)
Q Consensus 403 ~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 457 (590)
+..+...+...|+ +++|...+++..+. +..| ....+..+...+...|++++|.+.
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6677777778888 88888888776532 1122 234677778888899999999999
Q ss_pred HHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CC---CCC----HhHHHHHHHHHHhcCCchHHHHH
Q 038522 458 FTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NI---KPT----ASLWSAILGACSIYGNTSLGELA 525 (590)
Q Consensus 458 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~ 525 (590)
+++..+.....++ ...+..+...+...|++++|.+.+++. .. .++ ..++..+...+...|++++|...
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9888754211112 336778888999999999999999887 11 112 45677788889999999999999
Q ss_pred HHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 526 ARNLFDMEPEK------SVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 526 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
++++++..|.. ..++..++.+|...|++++|.+.+++..+..
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99998765422 4478899999999999999999999987743
No 62
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=7e-10 Score=113.11 Aligned_cols=214 Identities=9% Similarity=0.048 Sum_probs=133.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHH-HHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522 318 AFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGR-QIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG 396 (590)
Q Consensus 318 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 396 (590)
+..+|++.+.. ++-....|.....-+...|+.+.|. .+++...... +.+...+..++....+.|++++|..+|+++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44566666543 2335555666666666667777775 7777777643 3355666667777777788888887777765
Q ss_pred C-------------CC------------cchHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCcHHHHHHHHHHhhcc-C
Q 038522 397 D-------------KN------------VISWTSLIAGYAKHGYGHEAIELYKKMKHE-GMVPNDVTFLSLLFACSHT-G 449 (590)
Q Consensus 397 ~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-~ 449 (590)
+ |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 3 21 124666666666777777788888777764 1 11223333222222232 4
Q ss_pred ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC----CHhHHHHHHHHHHhcCCchHHHH
Q 038522 450 LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP----TASLWSAILGACSIYGNTSLGEL 524 (590)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~ 524 (590)
+.+.|.++|+...+.+ +.+...+...++.....|+.+.|..+|+++ ...| ....|...+.--...|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4777888887777653 234555666777677777788888888776 3233 23456666666667777878888
Q ss_pred HHHHHhcCCCCC
Q 038522 525 AARNLFDMEPEK 536 (590)
Q Consensus 525 ~~~~~~~~~p~~ 536 (590)
+.+++.+..|++
T Consensus 563 v~~R~~~~~P~~ 574 (679)
T 4e6h_A 563 LEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHSTTC
T ss_pred HHHHHHHhCCCC
Confidence 888888777754
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.47 E-value=7.2e-13 Score=129.53 Aligned_cols=283 Identities=12% Similarity=-0.010 Sum_probs=192.7
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhccC-----C----CccchHHH
Q 038522 237 SILRASVGGIELMKISQIHDLIIKLGLESS---NKLTGSLIDVYAKYGSIRSAYQLYRSMLK-----T----DIISCTAL 304 (590)
Q Consensus 237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l 304 (590)
.....+...|++++|...++...+.+.... ..++..+...+...|++++|...+++... . ...++..+
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 333444445555555555555544421110 23455566666667777777766665411 1 13356677
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhchhh--------------------hHhHHHHHHH
Q 038522 305 ISGFARDDNHSKEAFDLFKDMILKKM-GID----DVILCLMLNICANVAS--------------------LNLGRQIHAF 359 (590)
Q Consensus 305 ~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~ 359 (590)
...+...|+ +++|...+++..+... .++ ..++..+...+...|+ ++.|...+..
T Consensus 94 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 94 GNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 778888888 9999999988765311 112 3467778888899999 9999999887
Q ss_pred HHHh----CC-CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHH
Q 038522 360 AFKY----QS-SYDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKK 425 (590)
Q Consensus 360 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 425 (590)
..+. +. .....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|...+++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 7653 11 12245678888999999999999999998763 22 23788889999999999999999999
Q ss_pred HHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 426 MKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQ 496 (590)
Q Consensus 426 m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (590)
..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8753 1111 1557788888999999999999999998764221222 55778889999999999999999988
Q ss_pred c-------CCCC-CHhHHHHHHHHHHhcCCch
Q 038522 497 M-------NIKP-TASLWSAILGACSIYGNTS 520 (590)
Q Consensus 497 ~-------~~~p-~~~~~~~l~~~~~~~~~~~ 520 (590)
. +..+ ...++..+...+...|+..
T Consensus 333 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 333 HLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 6 1111 2334555666666666554
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.45 E-value=2.9e-12 Score=124.08 Aligned_cols=223 Identities=8% Similarity=-0.025 Sum_probs=161.1
Q ss_pred HHHhchhhhHhHHHHHHHHHHh----CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----cchHHHH
Q 038522 342 NICANVASLNLGRQIHAFAFKY----QSSY-DAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN-----VISWTSL 406 (590)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l 406 (590)
..+...|+++.|...+..+.+. +..+ ...++..+...|...|++++|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666666543 1111 345667778888888888888888777652 11 2367778
Q ss_pred HHHHHhcCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCC-ChhHHHHH
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILP-RAEHFSCV 477 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l 477 (590)
...|...|++++|...+++..+. +-.+ ...++..+...+...|++++|.+.+++..+-. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 88899999999999999887653 1111 12467788888999999999999999887621 2213 35678888
Q ss_pred HHHHHhcCChHHHHHHHHhc-CC-----CC-CHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 478 VDLFARRGQLESAYNMIRQM-NI-----KP-TASLWSAILGACSIYGN---TSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
...|.+.|++++|.+.+++. .. .| ....+..+...+...|+ +++|+..+++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 99999999999999999887 11 22 22335667778888888 78888888777 33444566788999999
Q ss_pred HhcCChHHHHHHHHHhhh
Q 038522 548 TAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 548 ~~~g~~~~A~~~~~~~~~ 565 (590)
...|++++|.+.+++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999999877
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.42 E-value=7.5e-13 Score=124.18 Aligned_cols=199 Identities=16% Similarity=0.137 Sum_probs=125.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHc------C
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD-------K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHE------G 430 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g 430 (590)
....+..+...|...|++++|...+++..+ + ...++..+...+...|++++|...++++.+. +
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence 344555666666667777777666665541 1 1235666777777788888888877777653 2
Q ss_pred CCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-C----
Q 038522 431 MVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY-----RILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-N---- 498 (590)
Q Consensus 431 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---- 498 (590)
-.| ....+..+...+...|++++|.+.++++.+.. +..| ....+..+...|...|++++|.+.++++ .
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 34566777778888888888888888876531 1122 2456777788888888888888888776 1
Q ss_pred -----CCCC-------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 499 -----IKPT-------ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 499 -----~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
..+. ...+..+...+...+.+..+...++++....|..+.++..++.+|...|++++|.+++++..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111 1122223333446677778888888888888988999999999999999999999999988763
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=7.3e-12 Score=107.27 Aligned_cols=167 Identities=17% Similarity=0.123 Sum_probs=142.1
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 444 (590)
++.+|..+...|.+.|++++|+..|++..+ .+..+|..+...+.+.|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567788899999999999999999998763 356688889999999999999999999988752 3356677777888
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHH
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 522 (590)
+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999999865 2335778889999999999999999999998 4444 677899999999999999999
Q ss_pred HHHHHHHhcCCCCCc
Q 038522 523 ELAARNLFDMEPEKS 537 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~ 537 (590)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999653
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=3.1e-12 Score=109.62 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA 482 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (590)
|..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 333444455555555555555555432 1224455555566666666666666666666643 1224556666666677
Q ss_pred hcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522 483 RRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR 560 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 560 (590)
..|++++|.+.++++ ..+.+...+..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777666 223456677777888888888888888888888888888888888999999999999999998
Q ss_pred HHhhhcCC
Q 038522 561 KLMEERSL 568 (590)
Q Consensus 561 ~~~~~~~~ 568 (590)
+++.+...
T Consensus 168 ~~~~~~~~ 175 (186)
T 3as5_A 168 KKANELDE 175 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 88877543
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=1.5e-09 Score=110.64 Aligned_cols=443 Identities=8% Similarity=0.024 Sum_probs=246.2
Q ss_pred HHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC---hHHHHHHhcc
Q 038522 15 QALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGD---VLSARKAFDR 90 (590)
Q Consensus 15 ~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~ 90 (590)
+.+..|++. ...+-|...|..+++.+.+.+.+..+..+|+.++.. ++.+...|..-+..-.+.|. ++.+..+|++
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 344444444 445566777777777777777777777777777766 35566677777766666666 7777777776
Q ss_pred CCC-----CCccchHHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCC-HhhHHHHHHHHh---------ccC
Q 038522 91 MPE-----RNVVSWTAMISGYAQNGYD--------ENALLVFSAMLR-SGV-RAN-QFTYSSALRACA---------RMR 145 (590)
Q Consensus 91 ~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~---------~~~ 145 (590)
... |++..|...+....+.++. +...++|+.... -|. .|+ ...|...+.... ..+
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 543 4555566655555444443 223356665543 244 343 345555554332 223
Q ss_pred chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR 225 (590)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (590)
+++.+..+|+.++......-..+|......--..+. ..+.+++.+ ...+++.|...+.++..
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~ 270 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLN 270 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHH
Confidence 456666777766643211112222211111000000 001111100 00011122222222110
Q ss_pred --cCC----C-----------C-----C---hhhHHHHHHHhccCC-------ChhHHHHHHHHHHHhCCCCChhHHHHH
Q 038522 226 --QGM----K-----------P-----D---CFTLGSILRASVGGI-------ELMKISQIHDLIIKLGLESSNKLTGSL 273 (590)
Q Consensus 226 --~~~----~-----------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l 273 (590)
.++ + | + ...|...+.--...+ ..+.+..+|++.+..- +....+|...
T Consensus 271 ~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~y 349 (679)
T 4e6h_A 271 ITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNM 349 (679)
T ss_dssp HTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred HHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence 000 0 0 1 111222222111111 1233455666666542 4466677777
Q ss_pred HHHHHhcCChHHHH-HHHHhccC--C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcC---------CCCC-------
Q 038522 274 IDVYAKYGSIRSAY-QLYRSMLK--T-DIISCTALISGFARDDNHSKEAFDLFKDMILKK---------MGID------- 333 (590)
Q Consensus 274 ~~~~~~~g~~~~a~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---------~~p~------- 333 (590)
+..+...|+.++|. .+|++... | +...|-..+...-+.++ +++|..+|++++... -.|+
T Consensus 350 a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~-~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~ 428 (679)
T 4e6h_A 350 ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK-IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ 428 (679)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence 77777777777775 77777632 2 33345555566666677 778887777776531 0132
Q ss_pred -----HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-CChHHHHHHHHhcCC---CCcchHH
Q 038522 334 -----DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS-GEIADANRAFDEMGD---KNVISWT 404 (590)
Q Consensus 334 -----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~---~~~~~~~ 404 (590)
...|...+....+.++.+.|..++..+.+........+|...+..-.+. ++++.|..+|+...+ .+...|.
T Consensus 429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~ 508 (679)
T 4e6h_A 429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH
Confidence 2357777777778888999999999888762222334444333333444 458999999988764 3555667
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCC--cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522 405 SLIAGYAKHGYGHEAIELYKKMKHEGMVP--NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF 481 (590)
Q Consensus 405 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (590)
..+......|+.+.|..+|++.......+ ....|...+.--.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHh
Confidence 77777778899999999999988763222 3456777777777889999999999999876 45555555555544
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=4.4e-12 Score=130.87 Aligned_cols=161 Identities=18% Similarity=0.217 Sum_probs=141.9
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHH
Q 038522 400 VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCV 477 (590)
Q Consensus 400 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 477 (590)
..+|+.|...+.+.|++++|++.|++..+. .| +...+..+..++.+.|++++|++.|++..+. .|+ ...+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 456788888888899999999999998875 56 5778888899999999999999999999864 554 7788999
Q ss_pred HHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522 478 VDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN 555 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 555 (590)
..+|.+.|++++|++.|+++ .+.| +...|..+..++...|++++|++.|+++++++|+++.++..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999988 5555 567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 038522 556 ARKTRKLMEE 565 (590)
Q Consensus 556 A~~~~~~~~~ 565 (590)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=1.2e-11 Score=121.05 Aligned_cols=263 Identities=13% Similarity=0.013 Sum_probs=151.3
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhccC---------CCccchHHHHHHH
Q 038522 242 SVGGIELMKISQIHDLIIKLGLESSN----KLTGSLIDVYAKYGSIRSAYQLYRSMLK---------TDIISCTALISGF 308 (590)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~ 308 (590)
+...|++++|...++.+.+.+.. +. .++..+...|...|++++|...+++... .....+..+...+
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 136 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL 136 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 34444444444444444443211 11 2445556666666666666666655421 0123455666667
Q ss_pred HhcCCChHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHhchhh----------hHhHHHHHHHHHHhCCCcchhHHH
Q 038522 309 ARDDNHSKEAFDLFKDMILKK----MGI-DDVILCLMLNICANVAS----------LNLGRQIHAFAFKYQSSYDAAVGN 373 (590)
Q Consensus 309 ~~~~~~~~~a~~~~~~~~~~~----~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~ 373 (590)
...|+ +++|...+++..+.. -.| ...++..+...+...|+ .+.+...
T Consensus 137 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----------------- 198 (411)
T 4a1s_A 137 KVMGR-FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----------------- 198 (411)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----------------
T ss_pred HHCCC-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-----------------
Confidence 77777 777777777665431 011 11233334444444444 0000000
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC-----C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCc----HHHHH
Q 038522 374 ALIDMYAKSGEIADANRAFDEMGD-----K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VPN----DVTFL 439 (590)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~ 439 (590)
+++|...+++..+ . ....+..+...+...|++++|...+++..+... .++ ...+.
T Consensus 199 -----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 199 -----------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 4444444443321 1 123556666777777777777777777654210 011 23667
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CC------CC-CHhHHH
Q 038522 440 SLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NI------KP-TASLWS 507 (590)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~~~ 507 (590)
.+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|.+.+++. .. .+ ...++.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 7777888888888888888877654211111 456777888888889998888888876 11 11 134677
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
.+...+...|++++|...+++++++.+
T Consensus 348 ~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 348 SLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 788888899999999999999988776
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.37 E-value=2.2e-11 Score=108.31 Aligned_cols=165 Identities=13% Similarity=-0.005 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDL 480 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 480 (590)
.+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+. .|+ ...+..+..+
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHHH
Confidence 344444444445555555555555444321134444444444455555555555555555432 222 3344445555
Q ss_pred HHhcCChHHHHHHHHhc-CCCC-CH-------hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC--CcchHHHHHHHHHh
Q 038522 481 FARRGQLESAYNMIRQM-NIKP-TA-------SLWSAILGACSIYGNTSLGELAARNLFDMEPE--KSVNYVVLSNIYTA 549 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 549 (590)
|...|++++|++.+++. ...| +. ..|..+...+...|++++|+..++++++.+|+ ++.++..++.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 55555555555555544 2222 22 23444444455555555555555555555555 45555555555555
Q ss_pred cCCh---------------------------HHHHHHHHHhhhcCCc
Q 038522 550 AGAW---------------------------DNARKTRKLMEERSLR 569 (590)
Q Consensus 550 ~g~~---------------------------~~A~~~~~~~~~~~~~ 569 (590)
.|+. ++|++.+++..+..+.
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 5555 9999999998886543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=1.3e-10 Score=108.50 Aligned_cols=216 Identities=10% Similarity=0.090 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------hhhh-------HhHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 038522 316 KEAFDLFKDMILKKMGIDDVILCLMLNICAN-------VASL-------NLGRQIHAFAFKYQSSYDAAVGNALIDMYAK 381 (590)
Q Consensus 316 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 381 (590)
++|...|++.+... +-+...|..+...+.. .|+. +.|..+++...+.-.+-+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666666531 2233344444443332 2333 4555555555442111233444445555555
Q ss_pred cCChHHHHHHHHhcCC--CC-cc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh-ccCChHHHHH
Q 038522 382 SGEIADANRAFDEMGD--KN-VI-SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS-HTGLTCEGWE 456 (590)
Q Consensus 382 ~~~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~ 456 (590)
.|++++|..+|+++.+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555554432 21 11 44444444444555555555555544431 112222222211111 1345555555
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-C---CCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 457 LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-N---IKPT--ASLWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
+|++..+.. +.+...+..++..+.+.|++++|..+|+++ . ++|+ ...|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555544331 112344444444444555555555555444 1 1321 2334444444444455555555555555
Q ss_pred cCCCC
Q 038522 531 DMEPE 535 (590)
Q Consensus 531 ~~~p~ 535 (590)
+..|+
T Consensus 269 ~~~p~ 273 (308)
T 2ond_A 269 TAFRE 273 (308)
T ss_dssp HHTTT
T ss_pred HHccc
Confidence 44443
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=2.3e-11 Score=115.23 Aligned_cols=264 Identities=13% Similarity=0.038 Sum_probs=149.2
Q ss_pred hccCCChhHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhccC-----C----CccchHHHHHHHH
Q 038522 242 SVGGIELMKISQIHDLIIKLGLESS---NKLTGSLIDVYAKYGSIRSAYQLYRSMLK-----T----DIISCTALISGFA 309 (590)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~ 309 (590)
+...|+++.|...++.+.+...... ..++..+...+...|++++|.+.+++... . ....+..+...+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 3344444444444444444321100 23444555566666666666666555411 0 1234555666677
Q ss_pred hcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhchhh--------------------hHhHHHHHHHHHHhC
Q 038522 310 RDDNHSKEAFDLFKDMILKKM-GID----DVILCLMLNICANVAS--------------------LNLGRQIHAFAFKYQ 364 (590)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~ 364 (590)
..|+ +++|...+++..+... .++ ..++..+...+...|+ ++.|...+......
T Consensus 95 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~- 172 (338)
T 3ro2_A 95 VLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL- 172 (338)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HccC-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH-
Confidence 7777 7777777777654210 111 1233344444444454 44444333332211
Q ss_pred CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCC-cHHH
Q 038522 365 SSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK--NVISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVP-NDVT 437 (590)
Q Consensus 365 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~ 437 (590)
......+ ....+..+...+...|++++|...+++..+. +..+ ...+
T Consensus 173 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 225 (338)
T 3ro2_A 173 ---------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225 (338)
T ss_dssp ---------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0111000 1234556666777777777777777766542 1111 1236
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CC------CC-CHhH
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NI------KP-TASL 505 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~ 505 (590)
+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...++++ .. .+ ...+
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 305 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA 305 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 677777788888888888888877653211112 456677788888899999998888876 11 11 1346
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 506 WSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
+..+...+...|++++|...+++++++.+
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 306 CWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 77788888999999999999999988776
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=5.8e-11 Score=114.65 Aligned_cols=222 Identities=9% Similarity=-0.050 Sum_probs=157.3
Q ss_pred HHhchhhhHhHHHHHHHHHHhCC--C---cchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----cchHHHHH
Q 038522 343 ICANVASLNLGRQIHAFAFKYQS--S---YDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN-----VISWTSLI 407 (590)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l~ 407 (590)
.+...|+++.|...+..+.+... . ....++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34556666777766666654311 1 1245667778888888888888888776642 22 23677788
Q ss_pred HHHHhcCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCCChhHHHHHHH
Q 038522 408 AGYAKHGYGHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILPRAEHFSCVVD 479 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~ 479 (590)
..|...|++++|.+.+++..+. +-.+ ...++..+..++...|++++|.+.+++..+.. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8899999999999999887652 1111 23467778888999999999999999887621 11223667788889
Q ss_pred HHHhcCChHHHHHHHHhc----CC--CC-CHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 480 LFARRGQLESAYNMIRQM----NI--KP-TASLWSAILGACSIYGN---TSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
.|.+.|++++|.+.+++. .. .| ....+..+...+...++ +.+|+..+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 999999999999999887 11 22 22345555566667777 77777777762 2334455678889999999
Q ss_pred cCChHHHHHHHHHhhh
Q 038522 550 AGAWDNARKTRKLMEE 565 (590)
Q Consensus 550 ~g~~~~A~~~~~~~~~ 565 (590)
.|++++|.+.+++..+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998865
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=8.8e-11 Score=113.63 Aligned_cols=226 Identities=9% Similarity=0.023 Sum_probs=159.4
Q ss_pred HHHhcCCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC------cchhHHHHH
Q 038522 307 GFARDDNHSKEAFDLFKDMILKK-MGID----DVILCLMLNICANVASLNLGRQIHAFAFKYQSS------YDAAVGNAL 375 (590)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l 375 (590)
.+...|+ +++|...+++....- -.++ ..++..+...+...|+++.|...+....+.... ....+++.+
T Consensus 112 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 112 YELDQRE-YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHhcC-HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445555 666666666655421 0111 234555556666666777666666665542111 124567778
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-----CCc----chHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCC-cHHHHHHH
Q 038522 376 IDMYAKSGEIADANRAFDEMGD-----KNV----ISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVP-NDVTFLSL 441 (590)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 441 (590)
...|...|++++|...|++..+ ++. .++..+...|...|++++|...+++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 8888999999999998887752 221 37788899999999999999999988762 3324 46678889
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcC---CCCChhHHHHHHHHHHhcCC---hHHHHHHHHhcCCCCC-HhHHHHHHHHHH
Q 038522 442 LFACSHTGLTCEGWELFTDMINKYR---ILPRAEHFSCVVDLFARRGQ---LESAYNMIRQMNIKPT-ASLWSAILGACS 514 (590)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~ 514 (590)
...+...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++.+..|+ ...+..+...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998875421 11123335667788888898 8999999999854444 346778889999
Q ss_pred hcCCchHHHHHHHHHhcCC
Q 038522 515 IYGNTSLGELAARNLFDME 533 (590)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~ 533 (590)
..|++++|...+++++++.
T Consensus 351 ~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998543
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=1.9e-11 Score=121.44 Aligned_cols=180 Identities=8% Similarity=-0.043 Sum_probs=158.0
Q ss_pred ChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc-hHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHH
Q 038522 384 EIADANRAFDEMGD---KNVISWTSLIAGYAKHGYG-HEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELF 458 (590)
Q Consensus 384 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 458 (590)
.++++...+++... .+...+..+...+...|++ ++|++.|++..+. .| +...+..+..++...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35666666665543 3567888899999999999 9999999999986 45 5788999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc--------CCc
Q 038522 459 TDMINKYRILPRAEHFSCVVDLFARR---------GQLESAYNMIRQM-NIKP-TASLWSAILGACSIY--------GNT 519 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~ 519 (590)
++..+ ..|+...+..+...|... |++++|++.++++ ...| +...|..+..+|... |++
T Consensus 161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 99994 468888899999999999 9999999999998 4444 578899999999988 999
Q ss_pred hHHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 520 SLGELAARNLFDMEP---EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 520 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
++|+..++++++++| .++.+|..++.+|...|++++|.+.+++..+..+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999 9999999999999999999999999999987653
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.33 E-value=3.2e-10 Score=105.88 Aligned_cols=179 Identities=11% Similarity=0.067 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh-HHHHHHHHHHhcCChHHHHHHHH
Q 038522 316 KEAFDLFKDMILKKMGI-DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA-VGNALIDMYAKSGEIADANRAFD 393 (590)
Q Consensus 316 ~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~ 393 (590)
++|..+|++.+.. +.| +...+..+...+...|+++.|..+++.+.+..+. +.. ++..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555555542 122 2234445555555555555555555555553322 122 45555555555555555555555
Q ss_pred hcCCC---CcchHHHHHHHHH-hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522 394 EMGDK---NVISWTSLIAGYA-KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP 469 (590)
Q Consensus 394 ~~~~~---~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (590)
+..+. +...|........ ..|++++|..+|++..+. .+-+...+..++..+.+.|++++|..+|++......++|
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p 237 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence 54431 1112222211111 145555555555555543 112344455555555555555555555555554211233
Q ss_pred --ChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 470 --RAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 470 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
....|..++..+.+.|+.++|..+++++
T Consensus 238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 238 EKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2334555555555555555555555554
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=6.7e-11 Score=105.20 Aligned_cols=204 Identities=12% Similarity=0.052 Sum_probs=137.5
Q ss_pred CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHH
Q 038522 332 IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIA 408 (590)
Q Consensus 332 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~ 408 (590)
.|+..+......+...|++++|...++...+..++++...+..+..++...|++++|...|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 345666677777778888888888888887777645666666677777888888888888877653 2 3446777777
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCC-cH-------HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC---hhHHHHH
Q 038522 409 GYAKHGYGHEAIELYKKMKHEGMVP-ND-------VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR---AEHFSCV 477 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 477 (590)
.+...|++++|+..+++..+. .| +. ..|..+...+...|++++|++.|++..+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 778888888888888877764 34 33 3466666677777888888888887774 3454 4556666
Q ss_pred HHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 478 VDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
..+|...|+. .++++ .+ ..+...+.... ....+.+++|+..++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6666554432 22332 11 12233333332 23456679999999999999999988888777654
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.30 E-value=1.5e-10 Score=98.92 Aligned_cols=168 Identities=13% Similarity=0.014 Sum_probs=143.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522 369 AAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445 (590)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 445 (590)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566778889999999999999999875 355678888999999999999999999998862 34678888889999
Q ss_pred hccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHH
Q 038522 446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGE 523 (590)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~ 523 (590)
...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999875 2446778888999999999999999999998 33 346778899999999999999999
Q ss_pred HHHHHHhcCCCCCcch
Q 038522 524 LAARNLFDMEPEKSVN 539 (590)
Q Consensus 524 ~~~~~~~~~~p~~~~~ 539 (590)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999988866544
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.30 E-value=1.5e-09 Score=104.58 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC--C--cHHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGD-------K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV--P--NDVT 437 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~ 437 (590)
..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... | ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 3444555555666555555554431 1 0123344555556666666666666665543111 1 1234
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhc-CCCCC-----HhHH
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFS-----CVVDLFARRGQLESAYNMIRQM-NIKPT-----ASLW 506 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~ 506 (590)
+..+...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 55555556666666666666666554311111111111 1223355666666666666665 21111 1134
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCC-----C-cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPE-----K-SVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..+...+...|++++|...++++....+. + ...+..++.++...|++++|...+++..+
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555566666666666666666543221 1 12455556666666666666666665544
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1.2e-11 Score=115.94 Aligned_cols=241 Identities=14% Similarity=0.084 Sum_probs=138.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhccC--------CC---ccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH
Q 038522 266 SNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--------TD---IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD 334 (590)
Q Consensus 266 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 334 (590)
...++..+...+...|++++|..+|+++.. .+ ...+..+...+...|+ +++|...+++.....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~----- 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-YKDAANLLNDALAIR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH-----
Confidence 344566666677777777777766655522 11 1233344444444444 555555554443220
Q ss_pred HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchH
Q 038522 335 VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-------K----NVISW 403 (590)
Q Consensus 335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~ 403 (590)
........+.....+..+...|...|++++|...+++..+ + ....+
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 0000000122345566667777777777777777776542 1 22356
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHc------CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc------CCCCC
Q 038522 404 TSLIAGYAKHGYGHEAIELYKKMKHE------GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY------RILPR 470 (590)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 470 (590)
..+...+...|++++|.+.++++.+. +..| ...++..+...+...|++++|.+.++++.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 77788888888888888888887764 2234 34567788888899999999999998887531 11111
Q ss_pred h-------hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 471 A-------EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 471 ~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
. ..+..+...+...+.+.+|...++.. ...| +..++..+...|...|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 11222233344455666667777776 2334 4567888999999999999999999999988773
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=1.7e-09 Score=97.64 Aligned_cols=244 Identities=10% Similarity=0.023 Sum_probs=119.5
Q ss_pred HHHHHhcCChHHHHHHHHhccCCCccc-hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHh
Q 038522 274 IDVYAKYGSIRSAYQLYRSMLKTDIIS-CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNL 352 (590)
Q Consensus 274 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 352 (590)
++-..-.|.+..++.-...+...+... -.-+.+++...|+ +... ..-.|....+..+..-+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~-~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQ-YQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTC-CCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCC-CccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 344556788888887655553322222 2223356666665 4421 01122222222222222 211
Q ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522 353 GRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK-----NVISWTSLIAGYAKHGYGHEAIELYKKMK 427 (590)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 427 (590)
+...++.....+ .++......+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555544443 223333345566666666666666666665322 22345555666666666666666666665
Q ss_pred HcCCCC-----cHHHHHHHHHH--hhccC--ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522 428 HEGMVP-----NDVTFLSLLFA--CSHTG--LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM- 497 (590)
Q Consensus 428 ~~g~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 497 (590)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 45 23444444444 22222 566666666666543 333222223333566666666666666544
Q ss_pred CC-----------CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522 498 NI-----------KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY 540 (590)
Q Consensus 498 ~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 540 (590)
.. +.++.++..++......|+ .|.++++++.+..|++|...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 11 2234444344433344454 55666666666666555443
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1.7e-10 Score=106.32 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=123.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHc------CC
Q 038522 369 AAVGNALIDMYAKSGEIADANRAFDEMGD-------K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHE------GM 431 (590)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~ 431 (590)
..++..+...|...|++++|...++++.+ + ...++..+...+...|++++|...+++..+. .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 44555566666666666666666665431 1 1235666777777777777777777776653 11
Q ss_pred CC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-C-----
Q 038522 432 VP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY-----RILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-N----- 498 (590)
Q Consensus 432 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----- 498 (590)
.| ...++..+...+...|++++|...++++.+.. +..| ...++..+...|...|++++|.+.++++ .
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 23 35567777788888888888888888876531 1122 2456777888888888888888888776 1
Q ss_pred ----CCCC-HhHHHHHHHHHHhcCC------chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 499 ----IKPT-ASLWSAILGACSIYGN------TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 499 ----~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..+. ...|..+...+...+. +..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1222 2334444333333222 33334444444444566677899999999999999999999998765
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=3.7e-10 Score=104.41 Aligned_cols=190 Identities=11% Similarity=-0.012 Sum_probs=130.4
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC--cHHHHHHH
Q 038522 376 IDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM---VP--NDVTFLSL 441 (590)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~l 441 (590)
...|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..+++..+... .+ -..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456667777777777765542 11 34677788888888888888888887765310 11 13567788
Q ss_pred HHHhhcc-CChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH--------hHHH
Q 038522 442 LFACSHT-GLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA--------SLWS 507 (590)
Q Consensus 442 l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~ 507 (590)
...|... |++++|+..|++..+...-..+ ..++..+...+.+.|++++|+..|++. ...|+. ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888885 9999999999988764211111 356788889999999999999999987 333322 1466
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCCcch-----HHHHHHHHH--hcCChHHHHHHHHHhhh
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVN-----YVVLSNIYT--AAGAWDNARKTRKLMEE 565 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 565 (590)
.+...+...|+++.|+..++++++++|..... +..++.+|. ..+++++|++.++.+..
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 77778889999999999999999999965543 344566664 45778888888876543
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=3.3e-09 Score=102.23 Aligned_cols=225 Identities=10% Similarity=0.063 Sum_probs=162.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCC-----C-cchhHHHHH
Q 038522 307 GFARDDNHSKEAFDLFKDMILKKM-GID----DVILCLMLNICANVASLNLGRQIHAFAFKYQS-----S-YDAAVGNAL 375 (590)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l 375 (590)
.+...|+ +++|+..|++...... .++ ..++..+...+...|+++.|...+....+... . ....+++.+
T Consensus 110 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 110 YEFDQKE-YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHCC-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3455666 7777777777664311 122 23455666677777888888877777655311 1 124567788
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCCcHHHHHHHH
Q 038522 376 IDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVPNDVTFLSLL 442 (590)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll 442 (590)
...|...|++++|...|++..+ ++ ..++..+...+...|++++|...+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 8889999999999998887652 22 236778888999999999999999988761 2222467788888
Q ss_pred HHhhccCChHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhcCCCCC-HhHHHHHHHHHHh
Q 038522 443 FACSHTGLTCEGWELFTDMINKYRILPR---AEHFSCVVDLFARRGQ---LESAYNMIRQMNIKPT-ASLWSAILGACSI 515 (590)
Q Consensus 443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~ 515 (590)
..+.+.|++++|...+++..+...-.++ ...+..+...+...|+ +.+|+..+++.+..|+ ...+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999998875322122 3445566667777888 8899999998754443 3456778889999
Q ss_pred cCCchHHHHHHHHHhcC
Q 038522 516 YGNTSLGELAARNLFDM 532 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~~ 532 (590)
.|++++|...++++++.
T Consensus 349 ~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998754
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=4.6e-10 Score=103.81 Aligned_cols=172 Identities=10% Similarity=-0.010 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCC---c--
Q 038522 370 AVGNALIDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKH-GYGHEAIELYKKMKHEGMVP---N-- 434 (590)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p---~-- 434 (590)
.+++.+..+|.+.|++++|+..|++..+ .+ ..+++.+...|... |++++|+..|++..+. .| +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 3455566666666666666666665542 11 23677788888886 9999999999988763 22 1
Q ss_pred --HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh--
Q 038522 435 --DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-----EHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS-- 504 (590)
Q Consensus 435 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 504 (590)
..++..+...+...|++++|+..|++..+...-.+.. ..+..+..++...|++++|...|++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 3567888889999999999999999998652111111 15677888899999999999999998 5556432
Q ss_pred ----HHHHHHHHHH--hcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522 505 ----LWSAILGACS--IYGNTSLGELAARNLFDMEPEKSVNYVVL 543 (590)
Q Consensus 505 ----~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 543 (590)
.+..++.++. ..+++++|+..|+++..++|.....+..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 2344555554 45678999999999999998554444433
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=7.9e-10 Score=100.48 Aligned_cols=183 Identities=13% Similarity=0.013 Sum_probs=101.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CC-cHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VP-NDVTFL 439 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~ 439 (590)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|++..+... .| ....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344445555556666666666666666552 22 23455555666666666666666666665411 11 133444
Q ss_pred HHHHHhhc--------cCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHH
Q 038522 440 SLLFACSH--------TGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAIL 510 (590)
Q Consensus 440 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 510 (590)
.+..++.. .|++++|...|+++.+. .|+ ......+.......++. ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 45555555 56666666666666654 222 11111110000000000 01124556
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhc----------CChHHHHHHHHHhhhcCC
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAA----------GAWDNARKTRKLMEERSL 568 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 568 (590)
..+...|+++.|+..++++++..|++ +.++..++.+|... |++++|+..++++.+..+
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 67777888888888888888777763 34677777777766 777888888887776553
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=2.7e-09 Score=94.38 Aligned_cols=184 Identities=12% Similarity=0.057 Sum_probs=113.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH----HHH
Q 038522 369 AAVGNALIDMYAKSGEIADANRAFDEMGD--KNV----ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND----VTF 438 (590)
Q Consensus 369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~ 438 (590)
+..+..+...+.+.|++++|...|+++.+ |+. ..+..+..++.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 33445556667777777777777777652 321 34566667777777777777777777764 3321 133
Q ss_pred HHHHHHhhc------------------cCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 038522 439 LSLLFACSH------------------TGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYNMIRQMNI 499 (590)
Q Consensus 439 ~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 499 (590)
..+..++.. .|++++|...|+++.+. .|+. .......... .... ..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~------~~-- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKD------RL-- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHH------HH--
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHH------HH--
Confidence 333333332 34455555555555532 2221 1111110000 0000 00
Q ss_pred CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522 500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS---VNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP 572 (590)
Q Consensus 500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (590)
......+...+...|+++.|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...++....
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 00113456678899999999999999999999776 56999999999999999999999999887765543
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=9.4e-10 Score=88.26 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=89.7
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHh
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSI 515 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~ 515 (590)
+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++ .. +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555566666666666666666643 1224555666666666777777777777666 22 3345566777777788
Q ss_pred cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 516 YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
.|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888778888888888888888888888888876644
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=1.1e-09 Score=113.08 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=140.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLF 443 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 443 (590)
+...++.+...|.+.|++++|+..|++..+ | +..+|..+..+|.+.|++++|+..|++..+. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 467788899999999999999999998763 3 5678899999999999999999999999885 56 5788999999
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCch
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTS 520 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 520 (590)
++...|++++|++.|++..+. .|+ ...+..+..+|.+.|++++|++.|+++ .+.| +...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999864 554 788999999999999999999999998 5556 4678899999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 038522 521 LGELAARNLFDMEP 534 (590)
Q Consensus 521 ~a~~~~~~~~~~~p 534 (590)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999986544
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=1.9e-10 Score=94.34 Aligned_cols=140 Identities=9% Similarity=-0.013 Sum_probs=104.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcC
Q 038522 408 AGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRG 485 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 485 (590)
..+...|++++|+..+++.... .| ++..+..+...|.+.|++++|++.|++..+. .| +...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence 3444566777888877776653 34 3445566777788888888888888888864 44 4677888888888888
Q ss_pred ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHH-HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522 486 QLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGEL-AARNLFDMEPEKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 486 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 552 (590)
++++|+..|++. .+.| ++..|..+...+...|++++|.. .++++++++|+++.+|.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888887 4455 46778888888888888876555 4688999999888888888888888775
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.11 E-value=2.6e-09 Score=97.10 Aligned_cols=205 Identities=13% Similarity=0.068 Sum_probs=147.2
Q ss_pred CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----cchH
Q 038522 332 IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN----VISW 403 (590)
Q Consensus 332 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~ 403 (590)
.+...+......+...|+++.|...++.+.+..+.. ....+..+..+|.+.|++++|...|+++.+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 455667777888899999999999999999876442 166778899999999999999999999873 32 2356
Q ss_pred HHHHHHHHh--------cCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHH
Q 038522 404 TSLIAGYAK--------HGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHF 474 (590)
Q Consensus 404 ~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (590)
..+..++.. .|++++|+..|+++.+. .|+. .....+ ..+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence 777888888 99999999999999985 4532 222111 111111111 01224
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhc----------CCchHHHHHHHHHhcCCCCCcch
Q 038522 475 SCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIY----------GNTSLGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~ 539 (590)
..+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|+..++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56777888899999999999887 33343 34667777777755 88999999999999999977543
Q ss_pred ---HHHHHHHHHhcCChHHHH
Q 038522 540 ---YVVLSNIYTAAGAWDNAR 557 (590)
Q Consensus 540 ---~~~l~~~~~~~g~~~~A~ 557 (590)
...+..++...|+++++.
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 445566666666555443
No 93
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=9.6e-08 Score=91.81 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=22.9
Q ss_pred HHhcCChHHHHHHHHhcCCCCc-------chHHHHHHHHHhcCCchHHHHHHHHH
Q 038522 379 YAKSGEIADANRAFDEMGDKNV-------ISWTSLIAGYAKHGYGHEAIELYKKM 426 (590)
Q Consensus 379 ~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m 426 (590)
+...|++++|...+++...+.. ..+..+...+...|++++|...+++.
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666666665555543211 02233444444555555555555444
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.8e-08 Score=90.92 Aligned_cols=239 Identities=9% Similarity=0.004 Sum_probs=160.5
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHH
Q 038522 308 FARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD 387 (590)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 387 (590)
..-.|. +..++.-...+ .-..+......+.+++...|+.... ....|.......+.. |...+
T Consensus 23 ~fy~G~-yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 23 NYYTGN-FVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHTTTC-HHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHhhH-HHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence 334566 77777633222 1112223333445666666665531 122333333333333 33322
Q ss_pred HHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522 388 ANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 388 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (590)
|...|++... ++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6777777653 445556677888888999999999999887654322 566777888889999999999999999985
Q ss_pred hcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcC-
Q 038522 464 KYRILP-----RAEHFSCVVDL--FARRG--QLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDM- 532 (590)
Q Consensus 464 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 532 (590)
. .| +..+...|+.+ ....| ++.+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4 66 35566666655 33334 899999999998 54565334444555788899999999999987775
Q ss_pred ---------CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 533 ---------EPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 533 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
+|+++.++..++.+....|+ +|.++++++++..+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 48888889888888888887 888999988886643
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=2.7e-09 Score=98.07 Aligned_cols=200 Identities=11% Similarity=0.052 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHhchhhhHhHHHHHHHHHHh------CC-CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C-
Q 038522 334 DVILCLMLNICANVASLNLGRQIHAFAFKY------QS-SYDAAVGNALIDMYAKSGEIADANRAFDEMGD-------K- 398 (590)
Q Consensus 334 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 398 (590)
..++..+...+...|+++.|...+..+.+. +. +....++..+...|...|++++|...+++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345556666666777777777776666553 22 22456677788888888888888888887652 2
Q ss_pred ---CcchHHHHHHHHHhcCCchHHHHHHHHHHHc------CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---
Q 038522 399 ---NVISWTSLIAGYAKHGYGHEAIELYKKMKHE------GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY--- 465 (590)
Q Consensus 399 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 465 (590)
...++..+...+...|++++|...+++..+. +-.| ...++..+...+...|++++|...++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2346777888899999999999999988764 2233 35678888889999999999999999887641
Q ss_pred ---CCCCC-hhHHHHHHHHHHhcC------ChHHHHHHHHhcC-CCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522 466 ---RILPR-AEHFSCVVDLFARRG------QLESAYNMIRQMN-IKP-TASLWSAILGACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 466 ---~~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
...+. ...+..+...+...+ .+.++...++..+ ..| ...++..+...|...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 11222 333444444444333 3444455555552 223 34567888899999999999999999988653
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.05 E-value=4.1e-09 Score=96.96 Aligned_cols=174 Identities=9% Similarity=-0.073 Sum_probs=137.4
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc
Q 038522 387 DANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY 465 (590)
Q Consensus 387 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 465 (590)
.....+......+...+..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444444444556667778888999999999999998885 45 6678888888999999999999999988754
Q ss_pred CCCCChhHHHH-HHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC--cchH
Q 038522 466 RILPRAEHFSC-VVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK--SVNY 540 (590)
Q Consensus 466 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 540 (590)
.|+...... ....+...++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ ..++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 455443322 233466778888899988887 3344 67788899999999999999999999999999977 7889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 541 VVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 541 ~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999998887543
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=8.7e-10 Score=114.53 Aligned_cols=167 Identities=9% Similarity=-0.034 Sum_probs=111.8
Q ss_pred HhcCChHHHHHHHHhcC--------C---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhc
Q 038522 380 AKSGEIADANRAFDEMG--------D---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSH 447 (590)
Q Consensus 380 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 447 (590)
...|++++|.+.+++.. + .+...+..+...+...|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45667777777776654 2 24456666677777777777777777777764 33 55666667777777
Q ss_pred cCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHH
Q 038522 448 TGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGEL 524 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 524 (590)
.|++++|.+.|++..+. .| +...+..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777754 34 35666677777777777777 7777776 3334 45566777777777777777777
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522 525 AARNLFDMEPEKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 525 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 552 (590)
.++++++++|.+..++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 7777777777777777777777766544
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=1.8e-08 Score=87.96 Aligned_cols=162 Identities=6% Similarity=-0.066 Sum_probs=129.8
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC----ChHHHHHHHHHHHhhcCCCCChhH
Q 038522 398 KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG----LTCEGWELFTDMINKYRILPRAEH 473 (590)
Q Consensus 398 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 473 (590)
.++..+..+...|...+++++|+..|++..+.| ++..+..+...|.. + ++++|.+.|++..+. .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456667777777777888888888888888764 45666667777777 6 889999999988754 35667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhc-CCCCC---HhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHH
Q 038522 474 FSCVVDLFAR----RGQLESAYNMIRQM-NIKPT---ASLWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYV 541 (590)
Q Consensus 474 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 541 (590)
+..|...|.. .+++++|+++|++. ...|+ +..+..|...|.. .+++++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888877 78999999999998 44453 7788888888887 78999999999999988 55788999
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHhhhcCC
Q 038522 542 VLSNIYTAA-G-----AWDNARKTRKLMEERSL 568 (590)
Q Consensus 542 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 568 (590)
.|+.+|... | ++++|.+++++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999865 3 89999999999888774
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=1.5e-09 Score=88.32 Aligned_cols=103 Identities=12% Similarity=0.003 Sum_probs=88.4
Q ss_pred CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 466 RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 466 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
.+.|+ ...+..+...+.+.|++++|+..|+++ ...| ++..|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34453 556777888888999999999999888 4445 67788999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 543 LSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 543 l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
++.+|...|++++|++.|++..+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999888654
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=6.9e-10 Score=90.92 Aligned_cols=125 Identities=9% Similarity=-0.052 Sum_probs=104.6
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYG 517 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 517 (590)
|...+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|++.|++. .+.| ++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456678899999999988874 3454 456677899999999999999999998 5555 6788999999999999
Q ss_pred CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH-HHHhhhcCC
Q 038522 518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT-RKLMEERSL 568 (590)
Q Consensus 518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~ 568 (590)
++++|+..++++++++|+++.++..++.+|...|++++|.+. +++..+..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999887765 587777554
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=3e-09 Score=90.00 Aligned_cols=157 Identities=11% Similarity=0.044 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH-H
Q 038522 404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL-F 481 (590)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 481 (590)
..+...+...|++++|...+++..+. .| +...+..+...+...|++++|...++++.+. .|+...+..+... +
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 33444555556666666666655543 23 3455555555666666666666666665533 2222222211111 1
Q ss_pred HhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHH
Q 038522 482 ARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK--SVNYVVLSNIYTAAGAWDNAR 557 (590)
Q Consensus 482 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 557 (590)
...++..+|+..+++. ...| +...+..+...+...|++++|+..++++++.+|.. +..+..++.+|...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1222333466667666 3345 56778888888899999999999999999999854 558889999999999999999
Q ss_pred HHHHHhhh
Q 038522 558 KTRKLMEE 565 (590)
Q Consensus 558 ~~~~~~~~ 565 (590)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887654
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=1e-08 Score=82.01 Aligned_cols=131 Identities=19% Similarity=0.253 Sum_probs=102.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF 481 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (590)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777888888888888888887753 335667777788888888888888888888765 233466777888888
Q ss_pred HhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 482 ARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 482 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8889999999888887 32 335677788888888999999999999998888774
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=6e-09 Score=106.39 Aligned_cols=159 Identities=10% Similarity=0.006 Sum_probs=118.9
Q ss_pred cCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHH
Q 038522 382 SGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWEL 457 (590)
Q Consensus 382 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 457 (590)
.|++++|...|++..+ .+...|..+...+...|++++|.+.+++..+. .| +...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788899999988774 24567888888999999999999999998875 45 577888888899999999999999
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc---CCchHHHHHHHHHhcC
Q 038522 458 FTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIY---GNTSLGELAARNLFDM 532 (590)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 532 (590)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999865 1334778888899999999999999999888 4344 567788888888888 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 038522 533 EPEKSVNYVVLS 544 (590)
Q Consensus 533 ~p~~~~~~~~l~ 544 (590)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998888877776
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=3.6e-09 Score=83.49 Aligned_cols=93 Identities=11% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence 344444455555555555555444 2222 34444455555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHhhhc
Q 038522 552 AWDNARKTRKLMEER 566 (590)
Q Consensus 552 ~~~~A~~~~~~~~~~ 566 (590)
++++|++.+++..+.
T Consensus 96 ~~~~A~~~~~~al~l 110 (126)
T 4gco_A 96 EWSKAQRAYEDALQV 110 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555554443
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=1.4e-08 Score=88.45 Aligned_cols=133 Identities=8% Similarity=-0.002 Sum_probs=96.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHh
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFAR 483 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 483 (590)
+..++.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+. .| +...+..+...|..
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence 778888899999999999998875 45 6778888888889999999999999998865 44 46778888887766
Q ss_pred cCC--hHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522 484 RGQ--LESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS 544 (590)
Q Consensus 484 ~g~--~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 544 (590)
.|+ .+.+...++.. ...|....+.....++...|++++|+..+++++++.|+ ......+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~ 197 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 654 34556666665 32233334445566667788999999999999999994 33333333
No 106
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=9.4e-09 Score=89.53 Aligned_cols=157 Identities=10% Similarity=0.098 Sum_probs=117.4
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHH----------------HHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLS----------------LLFACSHTGLTCEGWELFTDMINKYRILP 469 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 469 (590)
...+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|+..|++..+. .|
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p 85 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---AP 85 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC
Confidence 34455666667777776666653 442 334444 788899999999999999999975 45
Q ss_pred -ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC--chHHHHHHHHHhcCCCCCcchHHHHH
Q 038522 470 -RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN--TSLGELAARNLFDMEPEKSVNYVVLS 544 (590)
Q Consensus 470 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~ 544 (590)
+...+..+..+|...|++++|+..|++. ...| +..+|..+...+...|+ .+.+...++++....| ....+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 5788999999999999999999999998 4455 56788888888766553 4556777777765444 334567788
Q ss_pred HHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 545 NIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 545 ~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
.++...|++++|+..|++..+..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999998876653
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=4.4e-09 Score=109.25 Aligned_cols=153 Identities=12% Similarity=0.026 Sum_probs=134.5
Q ss_pred HhcCCchHHHHHHHHHH--------HcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522 411 AKHGYGHEAIELYKKMK--------HEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF 481 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (590)
...|++++|++.+++.. +. .| +...+..+..++...|++++|.+.++++.+. .+.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 77899999999999998 42 44 5677888888999999999999999999975 133577889999999
Q ss_pred HhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038522 482 ARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT 559 (590)
Q Consensus 482 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 559 (590)
...|++++|++.|+++ ...| +...|..+..++...|++++ ++.|+++++++|+++.+|..++.+|...|++++|++.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998 5455 56778899999999999999 9999999999999999999999999999999999999
Q ss_pred HHHhhhcCC
Q 038522 560 RKLMEERSL 568 (590)
Q Consensus 560 ~~~~~~~~~ 568 (590)
++++.+.+.
T Consensus 557 ~~~al~l~P 565 (681)
T 2pzi_A 557 LDEVPPTSR 565 (681)
T ss_dssp HHTSCTTST
T ss_pred HHhhcccCc
Confidence 998776543
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=2.4e-08 Score=87.37 Aligned_cols=129 Identities=12% Similarity=-0.027 Sum_probs=102.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF 481 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (590)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 45566777888899999999888763 667888888888888999999999999988865 133567788888889
Q ss_pred HhcCChHHHHHHHHhc-CCCC-C----------------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522 482 ARRGQLESAYNMIRQM-NIKP-T----------------ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK 536 (590)
Q Consensus 482 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 536 (590)
...|++++|++.|+++ ...| + ...+..+..++...|++++|...++++++..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999998887 2222 2 2567788888888899999999999999988865
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=5.7e-08 Score=90.41 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=150.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHH
Q 038522 312 DNHSKEAFDLFKDMILKKMGIDDVILCLMLNICAN-VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANR 390 (590)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 390 (590)
++ +++|.+++++..+.. +.. +.. .++++.|...+. .....|...|++++|..
T Consensus 5 ~~-~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~---------------~a~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 5 QK-ISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYA---------------KAAVAFKNAKQLEQAKD 57 (307)
T ss_dssp HH-HHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHH---------------HHHHHHHHTTCHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHH---------------HHHHHHHHcCCHHHHHH
Confidence 44 677777777765431 110 111 345555555544 34556778888888888
Q ss_pred HHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcC---CCCc--HHHHHHHHHHhhccCChHHHHH
Q 038522 391 AFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEG---MVPN--DVTFLSLLFACSHTGLTCEGWE 456 (590)
Q Consensus 391 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~ 456 (590)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8877652 12 2477888889999999999999999876531 1222 3567788888888 99999999
Q ss_pred HHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCC---CC----HhHHHHHHHHHHhcCCchHHHH
Q 038522 457 LFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIK---PT----ASLWSAILGACSIYGNTSLGEL 524 (590)
Q Consensus 457 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~~~~~~a~~ 524 (590)
.|++..+...-..+ ..++..+...|.+.|++++|++.|++. .+. ++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998764211111 457888899999999999999999987 211 11 1255666667778899999999
Q ss_pred HHHHHhcCCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 038522 525 AARNLFDMEPEKSVN-----YVVLSNIYTAAGAWDNARKT 559 (590)
Q Consensus 525 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 559 (590)
.+++++ +.|..... ...++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99965433 34455555 67887776663
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.90 E-value=4.3e-09 Score=85.85 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 445555666666777777777777666 3233 55566666677777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHhhhcC
Q 038522 549 AAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~ 567 (590)
..|++++|++.+++..+..
T Consensus 101 ~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHC
Confidence 7777777777777666543
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=1.3e-07 Score=87.35 Aligned_cols=160 Identities=7% Similarity=-0.079 Sum_probs=121.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcC-CCCcHH----HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHH
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEG-MVPNDV----TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSC 476 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 476 (590)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...+++++|+..+++..+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4667788899999999999988642 122321 2334666677788999999999999874222223 236888
Q ss_pred HHHHHHhcCChHHHHHHHHhc-----CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC------cchHH
Q 038522 477 VVDLFARRGQLESAYNMIRQM-----NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK------SVNYV 541 (590)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 541 (590)
+...|...|++++|+..++++ ..+.+ ..++..+...|...|++++|+..+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999887 12112 2367888899999999999999999999765422 56799
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHhhh
Q 038522 542 VLSNIYTAAGA-WDNARKTRKLMEE 565 (590)
Q Consensus 542 ~l~~~~~~~g~-~~~A~~~~~~~~~ 565 (590)
.++.+|...|+ +++|.+.+++..+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999999998865
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=1.4e-08 Score=80.00 Aligned_cols=115 Identities=8% Similarity=-0.002 Sum_probs=97.2
Q ss_pred CCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHH
Q 038522 431 MVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWS 507 (590)
Q Consensus 431 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 507 (590)
+.|+ ...+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4564 356777788899999999999999999865 2335788888999999999999999999988 4444 567899
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
.+..++...|++++|++.++++++++|+++.++..|..++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999988887653
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=3.1e-08 Score=91.04 Aligned_cols=136 Identities=8% Similarity=-0.062 Sum_probs=115.7
Q ss_pred CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHH
Q 038522 432 VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAI 509 (590)
Q Consensus 432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 509 (590)
+.+...+..+...+...|++++|...|++..+. .| +...+..+...+.+.|++++|...++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 445667777888899999999999999999975 45 5778889999999999999999999998 556765544333
Q ss_pred H-HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522 510 L-GACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK 570 (590)
Q Consensus 510 ~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (590)
. ..+...++.+.|+..++++++.+|+++..+..++.+|...|++++|...++++.+..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 3 346678899999999999999999999999999999999999999999999999876543
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.88 E-value=5.2e-08 Score=90.06 Aligned_cols=164 Identities=6% Similarity=-0.099 Sum_probs=118.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-H----HHHHHHHHHhhccCChHHHHHHHHHHHhhcCC--CCC--hh
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-D----VTFLSLLFACSHTGLTCEGWELFTDMINKYRI--LPR--AE 472 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 472 (590)
.+...+..+...|++++|.+.+++..+...... . ..+..+...+...|++++|...+++..+.... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456677788888888888888776432211 1 22334555667788999999999888753111 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc----CCCCC-----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC------Cc
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM----NIKPT-----ASLWSAILGACSIYGNTSLGELAARNLFDMEPE------KS 537 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 537 (590)
+++.+...|...|++++|+..++++ ...|+ ..++..+...|...|++++|+..+++++++.+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888999999999999998876 11222 257788888999999999999999999865431 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHhhh
Q 038522 538 VNYVVLSNIYTAAGAWDNA-RKTRKLMEE 565 (590)
Q Consensus 538 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 565 (590)
.+|..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788999999999999999 777877654
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.85 E-value=1.1e-06 Score=80.42 Aligned_cols=192 Identities=15% Similarity=0.176 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCcchHHHHHHHH----Hhc---CCchHHHHHHHHHHHcCCCCcHHHH
Q 038522 371 VGNALIDMYAKSG--EIADANRAFDEMGD---KNVISWTSLIAGY----AKH---GYGHEAIELYKKMKHEGMVPNDVTF 438 (590)
Q Consensus 371 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~ 438 (590)
+++.-..++...| ++++++.+++.+.. .+..+|+.-...+ ... +++++++.+++++.+.. +-|...|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3444444455555 77777777777653 2334555433333 344 67888888888888752 3367777
Q ss_pred HHHHHHhhccCChH--HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhc-CCCC-CHhHHHH
Q 038522 439 LSLLFACSHTGLTC--EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ------LESAYNMIRQM-NIKP-TASLWSA 508 (590)
Q Consensus 439 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ 508 (590)
..-...+.+.|.++ ++++.++++.+. -.-|...|+.-...+.+.|+ ++++++.++++ ...| |...|+.
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 77776777777777 888888888865 12356666666666666666 78888888877 3334 6677877
Q ss_pred HHHHHHhcCCc-hHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 509 ILGACSIYGNT-SLGELAARNLFDME---PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 509 l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+...+.+.|+. +.+..+.+++.+++ |.++.++..++.+|.+.|+.++|+++++.+.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777777764 44666778777766 77888888899999888999999999988865
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.83 E-value=1.1e-07 Score=83.96 Aligned_cols=184 Identities=13% Similarity=-0.031 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcc----hHHH
Q 038522 334 DVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--DAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVI----SWTS 405 (590)
Q Consensus 334 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~ 405 (590)
...+......+...|+++.|...++.+.+..+.. ....+..+..+|.+.|++++|+..|+++.+ |+.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445566777889999999999999999875532 246778889999999999999999999873 4322 4445
Q ss_pred HHHHHHh------------------cCCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522 406 LIAGYAK------------------HGYGHEAIELYKKMKHEGMVPNDV-TFLSLLFACSHTGLTCEGWELFTDMINKYR 466 (590)
Q Consensus 406 l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 466 (590)
+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555543 57899999999999975 56432 2221110 001111111
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522 467 ILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV 538 (590)
Q Consensus 467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 538 (590)
.....+...|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|++++|++.++.+....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11234667888999999999999988 33443 246778889999999999999999999998886554
No 117
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=8.7e-06 Score=80.57 Aligned_cols=120 Identities=14% Similarity=-0.003 Sum_probs=57.6
Q ss_pred HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-CChHHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 038522 337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS-GEIADANRAFDEMGD--K-NVISWTSLIAGYAK 412 (590)
Q Consensus 337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 412 (590)
|...+....+.++.+.|..++..+ +.. ..+..+|...+..-... ++.+.|..+|+...+ | ++..|...+.-...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 333444444455556666666555 211 12223333222222222 246666666665432 1 22234444444455
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522 413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (590)
.|+.+.|..+|+++. .....|...+.--...|+.+.+.+++++..+
T Consensus 367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566666666666642 1344455555544555666666666666654
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.82 E-value=4.9e-08 Score=99.61 Aligned_cols=146 Identities=13% Similarity=-0.044 Sum_probs=74.3
Q ss_pred hhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHH
Q 038522 348 ASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYK 424 (590)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 424 (590)
|++++|...++.+.+..+. +...+..+...|.+.|++++|...|++..+ .+...|..+...+...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556666666655554322 345555666666666666666666665543 233455556666666666666666666
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhc
Q 038522 425 KMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR---GQLESAYNMIRQM 497 (590)
Q Consensus 425 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 497 (590)
+..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 666541 224555566666666666666666666666643 122345555666666666 6666666666655
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.82 E-value=2.1e-08 Score=84.86 Aligned_cols=118 Identities=8% Similarity=0.106 Sum_probs=53.7
Q ss_pred cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHH-HHhcCCc--hHH
Q 038522 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGA-CSIYGNT--SLG 522 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~a 522 (590)
.|++++|...+++..+. .+.+...+..+...|...|++++|...|+++ ...| +...+..+... +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34444444444444432 1123344444444455555555555555444 1112 33344444444 4444554 555
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
+..++++++.+|.++.++..++.+|...|++++|...++++.+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 555555555555555555555555555555555555555554433
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.82 E-value=5.6e-08 Score=81.03 Aligned_cols=128 Identities=6% Similarity=-0.034 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHHHHHHH
Q 038522 436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSAILGAC 513 (590)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 513 (590)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ... .+...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44666677778888888888888888764 2335777888888888999999999998887 333 3567888888999
Q ss_pred HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHHhhh
Q 038522 514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI--YTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 565 (590)
...|++++|...++++++..|.++..+..+..+ +...|++++|++.++...+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999888888555544 8889999999999987754
No 121
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=6.2e-06 Score=81.62 Aligned_cols=122 Identities=10% Similarity=-0.043 Sum_probs=66.0
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhc--CCCCCHhHHHHHHHHH
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG-QLESAYNMIRQM--NIKPTASLWSAILGAC 513 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~ 513 (590)
.|...+..+.+.++.+.|..+|++. +. . ..+...|...+..-...+ +.+.|..+|+.. ..+.++..|...+.-.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3444555555556677777777766 22 1 123333332222222223 567777777665 2222233444455555
Q ss_pred HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
...|+.+.|..+++++. .....|..++..-...|+.+.+.+++++..+
T Consensus 365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56677777777777762 2445566666655666777777776666654
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=1.6e-07 Score=79.19 Aligned_cols=154 Identities=11% Similarity=0.027 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH-hhc
Q 038522 372 GNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA-CSH 447 (590)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~ 447 (590)
.......+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+. .|++..+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34566778888999999999998874 35567888888999999999999999988764 3444333222211 122
Q ss_pred cCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC---HhHHHHHHHHHHhcCCchHH
Q 038522 448 TGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT---ASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a 522 (590)
.+....|...+++..+. .| +...+..+...+...|++++|...|+++ ...|+ ...+..+...+...|+.++|
T Consensus 87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 23334578888888864 45 4788888999999999999999999988 55664 45788888999999999999
Q ss_pred HHHHHHHh
Q 038522 523 ELAARNLF 530 (590)
Q Consensus 523 ~~~~~~~~ 530 (590)
...|++++
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 123
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.78 E-value=5.9e-08 Score=90.29 Aligned_cols=197 Identities=11% Similarity=0.009 Sum_probs=149.9
Q ss_pred chhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038522 346 NVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKK 425 (590)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 425 (590)
..|++++|..+++...+.... + .+...++++.|...|... ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 467888999988887764332 1 011157888888887763 5678889999999999998
Q ss_pred HHHcCC---CC--cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC--CC--hhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522 426 MKHEGM---VP--NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRIL--PR--AEHFSCVVDLFARRGQLESAYNMIRQ 496 (590)
Q Consensus 426 m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (590)
..+... .+ -..+|..+...|...|++++|+..+++..+-+.-. +. ..++..+...|.. |++++|++.|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 765311 11 14578888889999999999999999887542111 11 4567788888988 999999999988
Q ss_pred c-CCCC-------CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHH
Q 038522 497 M-NIKP-------TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS------VNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 497 ~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
. .+.| ...++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|++.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 2111 135678888999999999999999999998766433 3677788889999999999999999
Q ss_pred hh
Q 038522 563 ME 564 (590)
Q Consensus 563 ~~ 564 (590)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=3.8e-07 Score=79.65 Aligned_cols=131 Identities=11% Similarity=0.013 Sum_probs=111.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCCh
Q 038522 372 GNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLT 451 (590)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 451 (590)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 45567778899999999999999998888899999999999999999999999998863 34678888999999999999
Q ss_pred HHHHHHHHHHHhhcCC-------------CC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH
Q 038522 452 CEGWELFTDMINKYRI-------------LP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA 503 (590)
Q Consensus 452 ~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 503 (590)
++|.+.|++..+...- .| ....+..+..+|...|++++|.+.|+++ ...|+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999874211 11 1367888999999999999999999998 666754
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.77 E-value=8.5e-08 Score=76.41 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHH
Q 038522 434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILG 511 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 511 (590)
+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|++.++++ ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4555666666667777777777777776642 1224566666677777777777777777766 2223 4566777777
Q ss_pred HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522 512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA 552 (590)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 552 (590)
.+...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 77888888888888888888888777788888887776664
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=9.8e-08 Score=74.98 Aligned_cols=115 Identities=15% Similarity=0.178 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHH
Q 038522 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGA 512 (590)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 512 (590)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|...++++ .. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456666777777888888888888887764 1234667777788888888888888888777 22 3456677888888
Q ss_pred HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 513 CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
+...|++++|...++++++..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888889999999999988888888888888888776654
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.77 E-value=8.7e-08 Score=76.03 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHH
Q 038522 434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILG 511 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 511 (590)
+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 4556667777788888888888888888765 2335677778888888889999998888887 3333 5677888888
Q ss_pred HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 038522 512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWD 554 (590)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 554 (590)
.+...|++++|...++++++..|.++..+..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999988999999999998888753
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.76 E-value=4.9e-08 Score=79.02 Aligned_cols=96 Identities=9% Similarity=-0.031 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34444555666666666666666665 2233 455566666666677777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHhhhcC
Q 038522 550 AGAWDNARKTRKLMEERS 567 (590)
Q Consensus 550 ~g~~~~A~~~~~~~~~~~ 567 (590)
.|++++|.+.++...+..
T Consensus 99 ~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777665543
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.75 E-value=6.3e-08 Score=74.43 Aligned_cols=101 Identities=7% Similarity=0.007 Sum_probs=85.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC--CcchHHHHHH
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE--KSVNYVVLSN 545 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 545 (590)
+...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3556677788888899999999999887 33 345677888888999999999999999999999998 8999999999
Q ss_pred HHHhc-CChHHHHHHHHHhhhcCCcc
Q 038522 546 IYTAA-GAWDNARKTRKLMEERSLRK 570 (590)
Q Consensus 546 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 570 (590)
+|... |++++|.+.++...+.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999988866543
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.75 E-value=7.2e-08 Score=90.76 Aligned_cols=127 Identities=8% Similarity=-0.041 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----------------AEHFSCVVDLFARRGQLESAYNMIRQM- 497 (590)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~- 497 (590)
...+..+...+.+.|++++|...|++..+. .|+ ...+..+..+|.+.|++++|+..++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666666677777777777776654 232 467888999999999999999999988
Q ss_pred CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH-HHHHHHhh
Q 038522 498 NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA-RKTRKLME 564 (590)
Q Consensus 498 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 564 (590)
.+.| +...+..+..++...|++++|+..++++++++|.++.++..++.++...|++++| ...++.|.
T Consensus 224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 6778899999999999999999999999999999999999999999999999999 44566553
No 131
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.74 E-value=3.7e-08 Score=77.01 Aligned_cols=96 Identities=10% Similarity=-0.010 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA 550 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 550 (590)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999988 4444 6778889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHhhhcCC
Q 038522 551 GAWDNARKTRKLMEERSL 568 (590)
Q Consensus 551 g~~~~A~~~~~~~~~~~~ 568 (590)
|++++|+..+++..+..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999877554
No 132
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.74 E-value=6.3e-07 Score=78.06 Aligned_cols=160 Identities=11% Similarity=-0.069 Sum_probs=117.9
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCcchHHHHHHHHHhcC----CchHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMGD-KNVISWTSLIAGYAKHG----YGHEAIELYKKMKHEGMVPNDVTFLSLL 442 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll 442 (590)
++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|+.+|++..+.| ++..+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 455566677777777788888888777654 355666667777766 5 7888888888887754 556666677
Q ss_pred HHhhc----cCChHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHhc-CCCCCHhHHHHHH
Q 038522 443 FACSH----TGLTCEGWELFTDMINKYRILPR---AEHFSCVVDLFAR----RGQLESAYNMIRQM-NIKPTASLWSAIL 510 (590)
Q Consensus 443 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 510 (590)
..|.. .+++++|.+.|++..+. .|+ ...+..|...|.. .+++++|+.+|++. ...+++..+..+.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 77766 77889999999888854 342 6777888888888 78899999999888 4345666777777
Q ss_pred HHHHhc-C-----CchHHHHHHHHHhcCCC
Q 038522 511 GACSIY-G-----NTSLGELAARNLFDMEP 534 (590)
Q Consensus 511 ~~~~~~-~-----~~~~a~~~~~~~~~~~p 534 (590)
..|... | ++++|+..++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777543 2 88999999998887765
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=5.9e-08 Score=76.63 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666677777777777777766 3333 456677777777777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHhhhcC
Q 038522 550 AGAWDNARKTRKLMEERS 567 (590)
Q Consensus 550 ~g~~~~A~~~~~~~~~~~ 567 (590)
.|++++|.+.+++..+..
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 777777777777776644
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=4.2e-08 Score=89.81 Aligned_cols=191 Identities=9% Similarity=-0.045 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 038522 368 DAAVGNALIDMYAKSGEIADANRAFDEMG--DK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLF 443 (590)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~ 443 (590)
+...+..+...+.+.|++++|...|++.. .| +...|..+..++.+.|++++|...+++..+. .| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34556667778888888888888888775 23 5667888888899999999999999988875 45 5777888888
Q ss_pred HhhccCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLG 522 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 522 (590)
++...|++++|...|++..+. .|+. ..+...+....+..+...... ......+++......+.. + ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 899999999999999888754 2221 111112222221111111111 122233344444444432 2 36899999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhhc
Q 038522 523 ELAARNLFDMEPEKSVNYVVLSNIYTAA-GAWDNARKTRKLMEER 566 (590)
Q Consensus 523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 566 (590)
++.++++++.+|.+......+...+... +.+++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998888888888877776 8899999999988763
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.71 E-value=2e-07 Score=75.74 Aligned_cols=104 Identities=6% Similarity=-0.065 Sum_probs=89.1
Q ss_pred CCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHH
Q 038522 431 MVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLW 506 (590)
Q Consensus 431 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 506 (590)
+.| +...+..+...+.+.|++++|...|+++.+. .| +...|..+..+|...|++++|++.|+++ .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 455 3556777888899999999999999999965 45 5788999999999999999999999998 4445 56788
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999553
No 136
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=1.4e-05 Score=73.08 Aligned_cols=229 Identities=11% Similarity=0.015 Sum_probs=156.9
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhchh--hhHhHHHHHHHHHHhCCCcchhHHHHHHHHH----Hhc-
Q 038522 311 DDNHSKEAFDLFKDMILKKMGIDDV-ILCLMLNICANVA--SLNLGRQIHAFAFKYQSSYDAAVGNALIDMY----AKS- 382 (590)
Q Consensus 311 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 382 (590)
.+...++|+.++..++.. .|+.. .++.--..+...+ +++++...++.+....++ +..+++.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 333245666666666544 33332 2333333444444 666666666666665543 333333333333 344
Q ss_pred --CChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCch--HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC-----
Q 038522 383 --GEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGH--EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL----- 450 (590)
Q Consensus 383 --~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----- 450 (590)
+++++++.+++.+.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.-...+...+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 788899999988874 45567777777777788888 9999999999863 3366777766666666666
Q ss_pred -hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhc-CC----CCCHhHHHHHHHHHHhcCCchHHH
Q 038522 451 -TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES-AYNMIRQM-NI----KPTASLWSAILGACSIYGNTSLGE 523 (590)
Q Consensus 451 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~ 523 (590)
++++++.++.+... .+-|...|+.+...+.+.|+..+ +.++..++ .. ..+...+..++..+.+.|+.++|+
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 88999999999875 23467888888888888888555 55677766 22 346778899999999999999999
Q ss_pred HHHHHHhc-CCCCCcchHHHHHH
Q 038522 524 LAARNLFD-MEPEKSVNYVVLSN 545 (590)
Q Consensus 524 ~~~~~~~~-~~p~~~~~~~~l~~ 545 (590)
+.++.+.+ .+|-+...|...+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 99999996 89988777776554
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=3.9e-07 Score=81.22 Aligned_cols=184 Identities=8% Similarity=-0.041 Sum_probs=119.8
Q ss_pred hcCChHHHHHHHHhcCC--C-CcchHHHH-------HHHHHhcCCchHHHHHHHHHHHcCCCCc----------------
Q 038522 381 KSGEIADANRAFDEMGD--K-NVISWTSL-------IAGYAKHGYGHEAIELYKKMKHEGMVPN---------------- 434 (590)
Q Consensus 381 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~g~~p~---------------- 434 (590)
..++...|.+.|.++.. | ....|..+ ...+.+.++..+++..+++-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45777777777777663 2 23456555 3455555555555555554443 2221
Q ss_pred ------HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCH----h
Q 038522 435 ------DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTA----S 504 (590)
Q Consensus 435 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~ 504 (590)
......+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+.....|++ .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 122234455677788888888888777643 454335555666778888888888888877433332 3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDME--PE-KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 56667778888888888888888887433 53 4456778888888888888888888888776553
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=1e-07 Score=79.32 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHH
Q 038522 434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILG 511 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 511 (590)
+...+..+...+...|++++|+..|++..+. .+.+...+..+..+|.+.|++++|+..|++. .+.| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5667888888899999999999999999875 1235778888999999999999999999988 4444 5678888999
Q ss_pred HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522 512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI 546 (590)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 546 (590)
++...|++++|+..++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999888876655543
No 139
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=2.2e-07 Score=74.53 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=68.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666666677777777777777665 2233 4556667777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHhhhcC
Q 038522 548 TAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 548 ~~~g~~~~A~~~~~~~~~~~ 567 (590)
...|++++|.+.++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 77777777777777766643
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.64 E-value=9e-08 Score=75.55 Aligned_cols=96 Identities=6% Similarity=-0.063 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc-------hHHH
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV-------NYVV 542 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 542 (590)
..+..+...+.+.|++++|++.|+++ .+.| +...|..+..+|...|++++|+..++++++++|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777788888888888888777 4444 4566777888888888888888888888887775543 5667
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 543 LSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 543 l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
++.+|...|++++|++.+++..+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7778888888888888888876643
No 141
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=2.5e-07 Score=71.76 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHH
Q 038522 436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGAC 513 (590)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 513 (590)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 33444444555555555555555555543 1123444444455555555555555555544 2222 334444444555
Q ss_pred HhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
...|++++|...++++++..|.++..+..++.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55555555555555555555544444444433
No 142
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=1e-07 Score=77.57 Aligned_cols=117 Identities=9% Similarity=-0.029 Sum_probs=92.5
Q ss_pred HHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC
Q 038522 422 LYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI 499 (590)
Q Consensus 422 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 499 (590)
.++++.+ +.| +...+..+...+...|++++|...|+..... -+.+...+..+..+|...|++++|++.|+++ ..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445544 345 4556677778888999999999999998865 2335778888899999999999999999988 44
Q ss_pred CC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522 500 KP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV 542 (590)
Q Consensus 500 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 542 (590)
.| ++..+..+..++...|++++|+..+++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 44 56778888999999999999999999999999977766443
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.63 E-value=2.6e-07 Score=73.54 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
+...+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++|+..++++++..|.++.++..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4667888899999999999999999998 5455 6778899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhcCC
Q 038522 548 TAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 548 ~~~g~~~~A~~~~~~~~~~~~ 568 (590)
...|++++|.+.+++..+...
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999887654
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=3.6e-06 Score=77.57 Aligned_cols=159 Identities=11% Similarity=-0.058 Sum_probs=119.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCC---c------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-Cc----HHHHH
Q 038522 374 ALIDMYAKSGEIADANRAFDEMGDKN---V------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV-PN----DVTFL 439 (590)
Q Consensus 374 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~ 439 (590)
..+..+...|++++|...+++..+.. . ..+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999876421 1 12334666677778999999999999874222 22 33688
Q ss_pred HHHHHhhccCChHHHHHHHHHHHhhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-------CCCCC-HhHH
Q 038522 440 SLLFACSHTGLTCEGWELFTDMINKY----RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-------NIKPT-ASLW 506 (590)
Q Consensus 440 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 506 (590)
.+...|...|++++|...++++.+.. +..+. ..++..+...|.+.|++++|++.+++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88999999999999999999988532 11111 347788899999999999999999877 22222 5678
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHhcC
Q 038522 507 SAILGACSIYGN-TSLGELAARNLFDM 532 (590)
Q Consensus 507 ~~l~~~~~~~~~-~~~a~~~~~~~~~~ 532 (590)
..+..++...|+ +++|...+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888999999995 59999999998843
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=4.3e-07 Score=73.82 Aligned_cols=93 Identities=13% Similarity=0.031 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
.+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|+..++++++..|.++..+..++.+|
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 109 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL 109 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHH
Confidence 3344444444444444444444444 33333 233444444444455555555555555555554444455555555
Q ss_pred HhcCChHHHHHHHHHhhh
Q 038522 548 TAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 548 ~~~g~~~~A~~~~~~~~~ 565 (590)
...|++++|.+.+++..+
T Consensus 110 ~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 110 EKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554444
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=9.9e-07 Score=76.21 Aligned_cols=153 Identities=7% Similarity=-0.032 Sum_probs=87.8
Q ss_pred hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCC-ChhHHHHHHHHHHhcCCh
Q 038522 412 KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILP-RAEHFSCVVDLFARRGQL 487 (590)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 487 (590)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+.. +..| ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345566666644333321 11234555556666666666666666666655421 1111 134455666666777777
Q ss_pred HHHHHHHHhc-C---CCC-C----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC--CC----cchHHHHHHHHHhcCC
Q 038522 488 ESAYNMIRQM-N---IKP-T----ASLWSAILGACSIYGNTSLGELAARNLFDMEP--EK----SVNYVVLSNIYTAAGA 552 (590)
Q Consensus 488 ~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~ 552 (590)
++|.+.+++. . ..+ + ...+..+...+...|++++|...++++++..+ .+ ..++..++.+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777766665 1 011 2 23456666777777888888887777774322 11 2235677888888888
Q ss_pred hHHHHHHHHHhhh
Q 038522 553 WDNARKTRKLMEE 565 (590)
Q Consensus 553 ~~~A~~~~~~~~~ 565 (590)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877765
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=8.5e-07 Score=68.63 Aligned_cols=98 Identities=12% Similarity=0.140 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455667778888889999999888887 3333 66777888888888899999999999998888888888888899999
Q ss_pred hcCChHHHHHHHHHhhhcCC
Q 038522 549 AAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~~ 568 (590)
..|++++|.+.+++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999998888877543
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=4.2e-07 Score=71.25 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|+..++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567788889999999999999999998 33 3467788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHhhhcCC
Q 038522 549 AAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~~~~ 568 (590)
..|++++|.+.++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999987654
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=3e-06 Score=78.09 Aligned_cols=162 Identities=10% Similarity=-0.052 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC--CC-c------chHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CCc--HH
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMGD--KN-V------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGM---VPN--DV 436 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~ 436 (590)
.+...+..+...|++++|.+.+++..+ +. . ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778889999999998876542 11 1 1234456667788899999999999875321 122 45
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-------CH
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-------TA 503 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~ 503 (590)
+++.+...|...|++++|...+++..+.....|+ ..++..+...|...|++++|++.+++. .+.+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732111222 257888999999999999999999887 1111 15
Q ss_pred hHHHHHHHHHHhcCCchHH-HHHHHHHhcC
Q 038522 504 SLWSAILGACSIYGNTSLG-ELAARNLFDM 532 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 532 (590)
.++..+...|...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888999999999999 7778888743
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=4.7e-07 Score=78.01 Aligned_cols=96 Identities=7% Similarity=-0.052 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888889999999999999887 3334 667888899999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHhhhcC
Q 038522 550 AGAWDNAR-KTRKLMEERS 567 (590)
Q Consensus 550 ~g~~~~A~-~~~~~~~~~~ 567 (590)
.|+.+++. ..+..+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 99888887 5555554433
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=6.7e-07 Score=75.41 Aligned_cols=127 Identities=8% Similarity=0.041 Sum_probs=100.6
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH-HHhcCCh--
Q 038522 411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL-FARRGQL-- 487 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 487 (590)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34678889999999888752 3467888888899999999999999999998652 3356777788888 7789998
Q ss_pred HHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522 488 ESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY 540 (590)
Q Consensus 488 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 540 (590)
++|...++++ ...| +...+..+...+...|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999988 4444 567788888999999999999999999999999776544
No 152
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.55 E-value=3.1e-07 Score=72.68 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=43.2
Q ss_pred HHHHHhcCChHHHHHHHHhc-CCCCCH----hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHh
Q 038522 478 VDLFARRGQLESAYNMIRQM-NIKPTA----SLWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTA 549 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~ 549 (590)
...+...|++++|.+.|+++ ...|+. ..+..+..++...|++++|+..++++++..|++ +.++..++.+|..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 33444445555555555444 112221 244444445555555555555555555555544 4445555555555
Q ss_pred cCChHHHHHHHHHhhhc
Q 038522 550 AGAWDNARKTRKLMEER 566 (590)
Q Consensus 550 ~g~~~~A~~~~~~~~~~ 566 (590)
.|++++|.+.++++.+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 55555555555555443
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=1.4e-06 Score=70.66 Aligned_cols=112 Identities=12% Similarity=-0.010 Sum_probs=83.4
Q ss_pred cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHH
Q 038522 434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWS 507 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 507 (590)
+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+...|...|++++|++.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 455666666677777777777777777763 3455 466677777788888888888888776 3334 566777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
.+..++...|++++|...++++++.+|.++..+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888888999999999999999999988777777766543
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.52 E-value=6.4e-07 Score=70.86 Aligned_cols=99 Identities=15% Similarity=0.077 Sum_probs=88.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
+...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|++++|+..++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3566778888999999999999999998 33 346778888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHhhhcCC
Q 038522 548 TAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 548 ~~~g~~~~A~~~~~~~~~~~~ 568 (590)
...|++++|.+.+++..+...
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999888653
No 155
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.52 E-value=3.3e-07 Score=73.48 Aligned_cols=62 Identities=10% Similarity=-0.037 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcC-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDM-------EPEKSVNY----VVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
.|..+..++...|++++|+..+++++++ +|+++.+| +..+.++...|++++|++.|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7777888888888888888888888888 99888888 99999999999999999999988764
No 156
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.51 E-value=6.5e-07 Score=72.26 Aligned_cols=112 Identities=10% Similarity=-0.047 Sum_probs=86.8
Q ss_pred CC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHH
Q 038522 432 VP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSA 508 (590)
Q Consensus 432 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 508 (590)
.| +...+..+...+...|++++|...|+++... .+.+...+..+..+|.+.|++++|+..|++. ...| ++..+..
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 44 3445566677788889999999999888865 1335777888888899999999999999887 3344 5667788
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
+..++...|++++|+..+++++++.|.++........
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 8888999999999999999999999977766554433
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.51 E-value=8.6e-07 Score=69.79 Aligned_cols=112 Identities=8% Similarity=-0.108 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHH
Q 038522 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGA 512 (590)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 512 (590)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++. ...| +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 345666667777888888888888888764 1234677778888888888888888888887 3344 46678888888
Q ss_pred HHhcCCchHHHHHHHHHhcCC------CCCcchHHHHHHHHH
Q 038522 513 CSIYGNTSLGELAARNLFDME------PEKSVNYVVLSNIYT 548 (590)
Q Consensus 513 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 548 (590)
+...|++++|+..++++++++ |.++.++..+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888899999999999999888 777777776665543
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=1.2e-06 Score=72.71 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444445555555555555555554 2222 344445555555555555555555555555555555555555555555
Q ss_pred cCChHHHHHHHHHhhh
Q 038522 550 AGAWDNARKTRKLMEE 565 (590)
Q Consensus 550 ~g~~~~A~~~~~~~~~ 565 (590)
.|++++|++.+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555544
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=4.1e-07 Score=81.03 Aligned_cols=135 Identities=11% Similarity=-0.085 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHH
Q 038522 404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLF 481 (590)
Q Consensus 404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 481 (590)
-.+...+...|++++|.+.|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 34556677788888888888877764 465445555556777888899998888755431 1 111 23567778888
Q ss_pred HhcCChHHHHHHHHhc--CCC-CC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522 482 ARRGQLESAYNMIRQM--NIK-PT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL 543 (590)
Q Consensus 482 ~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 543 (590)
.+.|++++|++.|++. +-. |. ...+.....++.+.|+.++|...|+++...+|+ +.+...|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8999999999999888 211 43 345666777788899999999999999999996 5555544
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.47 E-value=8.2e-07 Score=76.72 Aligned_cols=153 Identities=14% Similarity=-0.002 Sum_probs=90.5
Q ss_pred hcCChHHHHH---HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH----cCCCC-cHHHHHHHHHHhhccCChH
Q 038522 381 KSGEIADANR---AFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKH----EGMVP-NDVTFLSLLFACSHTGLTC 452 (590)
Q Consensus 381 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~ 452 (590)
..|++++|.+ .+..-.......+..+...+...|++++|...+++..+ .+..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3466666666 44332222334566666666777777777777766554 11122 2345666666777777887
Q ss_pred HHHHHHHHHHhhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCC----HhHHHHHHHHHHhcCCc
Q 038522 453 EGWELFTDMINKYRILP-R----AEHFSCVVDLFARRGQLESAYNMIRQM----NIKPT----ASLWSAILGACSIYGNT 519 (590)
Q Consensus 453 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~ 519 (590)
+|...+++..+.....+ + ...+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 77777777654321112 1 334666677777778888887777765 11112 12346666777788888
Q ss_pred hHHHHHHHHHhcCC
Q 038522 520 SLGELAARNLFDME 533 (590)
Q Consensus 520 ~~a~~~~~~~~~~~ 533 (590)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777543
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=1.1e-07 Score=73.91 Aligned_cols=83 Identities=11% Similarity=0.039 Sum_probs=44.8
Q ss_pred cCChHHHHHHHHhc-CC---CC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522 484 RGQLESAYNMIRQM-NI---KP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK 558 (590)
Q Consensus 484 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 558 (590)
.|++++|+..|++. .. .| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 34555555555554 32 12 234455555555666666666666666666666666666666666666666666666
Q ss_pred HHHHhhhc
Q 038522 559 TRKLMEER 566 (590)
Q Consensus 559 ~~~~~~~~ 566 (590)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.46 E-value=1.9e-06 Score=84.73 Aligned_cols=129 Identities=6% Similarity=-0.022 Sum_probs=93.9
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-------------ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-------------RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP- 501 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 501 (590)
.+..+...+.+.|++++|...|++..+.....+ ....|..+..+|.+.|++++|+..++++ .+.|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444455555555666666666655554311111 1467888889999999999999999988 4344
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH-HHHHhhh
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK-TRKLMEE 565 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 565 (590)
+...|..+..+|...|++++|+..|+++++++|++..++..++.++...|++++|.+ .+..|..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677889999999999999999999999999999999999999999999999998874 4555543
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.44 E-value=6.3e-07 Score=74.29 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
.|..+..+|...|+++.|+..++++++++|.++.+|..++.+|...|++++|++.+++..+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34444444555555555555555555555555555555555555555555555555554443
No 164
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.44 E-value=8.5e-07 Score=83.45 Aligned_cols=150 Identities=9% Similarity=-0.051 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF 481 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 481 (590)
.+..+...+.+.|++++|+..|++..+. .|+... +...++.+++...+ . ...+..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence 4555666677777788888887777663 454332 22333333333221 1 13677888899
Q ss_pred HhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH-HHhcCChHHHHH
Q 038522 482 ARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI-YTAAGAWDNARK 558 (590)
Q Consensus 482 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~ 558 (590)
.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..++++++++|.++.++..|..+ ....+..+++.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 4444 677889999999999999999999999999999999999999888 445678888889
Q ss_pred HHHHhhhcCCccC
Q 038522 559 TRKLMEERSLRKN 571 (590)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (590)
.+..|.+......
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9998877655443
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=1.6e-06 Score=71.95 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522 472 EHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA 549 (590)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 549 (590)
..+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|+..++++++..|.++.++..++.+|..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45667788899999999999999998 33 34677888999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhhhcCC
Q 038522 550 AGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 550 ~g~~~~A~~~~~~~~~~~~ 568 (590)
.|++++|.+.++++.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST
T ss_pred hccHHHHHHHHHHHHHhCC
Confidence 9999999999999988654
No 166
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.42 E-value=7.4e-07 Score=70.51 Aligned_cols=110 Identities=4% Similarity=-0.095 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC----CCC----HhHH
Q 038522 436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI----KPT----ASLW 506 (590)
Q Consensus 436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 506 (590)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...++++ .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45556666667777777777777777654 1234556666666777777777777777665 11 112 4556
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
..+...+...|++++|...++++++..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6666666677777777777777776666 5555555554443
No 167
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=5.1e-05 Score=70.05 Aligned_cols=190 Identities=14% Similarity=0.097 Sum_probs=114.1
Q ss_pred HHHHHHHHHhcC-ChHHHHHHHHhcCCC---CcchHHHHHHHHHhc-C-CchHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Q 038522 372 GNALIDMYAKSG-EIADANRAFDEMGDK---NVISWTSLIAGYAKH-G-YGHEAIELYKKMKHEGMVP-NDVTFLSLLFA 444 (590)
Q Consensus 372 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~ 444 (590)
++.--..+...| .+++++.+++.+... +..+|+.-...+.+. + ++++++++++++.+. .| |...|..-...
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wv 168 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWL 168 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 333333444445 466777777666532 334555544444444 5 677777777777764 33 55666555555
Q ss_pred hhccCChH--------HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHHhc-CCCC-CHhHHH
Q 038522 445 CSHTGLTC--------EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ-------LESAYNMIRQM-NIKP-TASLWS 507 (590)
Q Consensus 445 ~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~ 507 (590)
+.+.|.++ ++++.++++.+. .+-|...|+.....+.+.++ ++++++.++++ ...| |...|+
T Consensus 169 l~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~ 246 (349)
T 3q7a_A 169 YSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN 246 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 55555555 777777777765 12356666666666666665 57777777776 3334 556666
Q ss_pred HHHHHHHhcCCc--------------------hHHHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522 508 AILGACSIYGNT--------------------SLGELAARNLFDME------PEKSVNYVVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 508 ~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (590)
-+...+.+.|+. .........+.... +..+.++..|+.+|...|+.++|.++++
T Consensus 247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 665555555543 23333444443332 4567778899999999999999999999
Q ss_pred Hhhh
Q 038522 562 LMEE 565 (590)
Q Consensus 562 ~~~~ 565 (590)
.+.+
T Consensus 327 ~l~~ 330 (349)
T 3q7a_A 327 KLSS 330 (349)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=1.8e-06 Score=69.03 Aligned_cols=113 Identities=9% Similarity=-0.094 Sum_probs=82.0
Q ss_pred CcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHH
Q 038522 433 PNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAIL 510 (590)
Q Consensus 433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 510 (590)
.+...+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 35667777777788888888888888887764 1234667777888888888888888888877 3334 566778888
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCC-----CcchHHHHHHHH
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPE-----KSVNYVVLSNIY 547 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 547 (590)
..+...|++++|+..+++++++.|+ +......+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888775 344444444433
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=2.4e-07 Score=79.81 Aligned_cols=121 Identities=7% Similarity=-0.021 Sum_probs=87.4
Q ss_pred hccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CH----------------hHHH
Q 038522 446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TA----------------SLWS 507 (590)
Q Consensus 446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~----------------~~~~ 507 (590)
...|+++.+.+.|+..... .......+..+...+.+.|++++|++.|++. ...| ++ ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 3344555555544432221 0112345566677777888888888888776 2222 22 6788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
.+..++...|++++|+..++++++.+|.++.++..++.+|...|++++|.+.+++..+...
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 8889999999999999999999999999999999999999999999999999999887653
No 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=2.5e-06 Score=77.92 Aligned_cols=107 Identities=9% Similarity=-0.042 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHH
Q 038522 434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAIL 510 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 510 (590)
+...+..+...+...|++++|...|++..+. .| +...+..+..+|.+.|++++|+..++++ ...| +...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455566666667777777777777777654 33 4566666667777777777777777666 4444 345566666
Q ss_pred HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522 511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVVL 543 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 543 (590)
.++...|++++|+..++++++++|+++..+...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~ 112 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 112 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence 667777777777777777777666554443333
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=4.5e-06 Score=65.86 Aligned_cols=103 Identities=13% Similarity=0.129 Sum_probs=72.3
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHH
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILPR-A---EHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILG 511 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 511 (590)
+...+...|++++|...|+.+.+. .|+ . ..+..+..++.+.|++++|...|++. ...|+ +..+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 445566777777777777777764 232 2 36666777777888888888888776 33333 456777778
Q ss_pred HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522 512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI 546 (590)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 546 (590)
++...|++++|...++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88888888888888888888888776665554443
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=8.8e-07 Score=87.57 Aligned_cols=118 Identities=8% Similarity=-0.003 Sum_probs=97.4
Q ss_pred HHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC
Q 038522 442 LFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN 518 (590)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 518 (590)
...+.+.|++++|.+.+++..+. .| +...+..+..+|.+.|++++|++.++++ ...| +...+..+..+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566788999999999998865 44 4778888999999999999999999988 4445 56788899999999999
Q ss_pred chHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHH
Q 038522 519 TSLGELAARNLFDMEPEKSVNYVVLSNI--YTAAGAWDNARKTRKL 562 (590)
Q Consensus 519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 562 (590)
+++|++.+++++++.|+++.++..++.+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999888 8899999999999883
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=5.1e-06 Score=81.49 Aligned_cols=189 Identities=9% Similarity=-0.049 Sum_probs=130.4
Q ss_pred HHHHhcCChHHHHHHHHhcCC--CC---c---------------chHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCcH
Q 038522 377 DMYAKSGEIADANRAFDEMGD--KN---V---------------ISWTSLIAGYAKHGYGHEAIELYKKMKHEG-MVPND 435 (590)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~--~~---~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~ 435 (590)
..+.+.|++++|.+.|..+.+ ++ . .++..+...|...|++++|.+.+.++...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345566777777777766542 10 0 136678888888999999998888766421 11222
Q ss_pred ----HHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-----CC--C
Q 038522 436 ----VTFLSLLFACSHTGLTCEGWELFTDMINKY---RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-----NI--K 500 (590)
Q Consensus 436 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~ 500 (590)
...+.+-..+...|+++.|.++++...... +..+. ..++..+...|...|++++|..++++. +. +
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 123333344556788999999888776431 22222 457778899999999999999998876 21 2
Q ss_pred C-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC---CC----cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 501 P-TASLWSAILGACSIYGNTSLGELAARNLFDMEP---EK----SVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 501 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
| ...++..++..|...|++++|...++++....| .+ ...+..++..+...|++++|.+.+.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 235678888999999999999999999885432 11 23466778888899999999988877755
No 174
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.35 E-value=2.2e-06 Score=67.50 Aligned_cols=94 Identities=10% Similarity=-0.025 Sum_probs=48.9
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC--------HhHHH
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT--------ASLWS 507 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~~~~~ 507 (590)
+..+...+.+.|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.+++. .+.|+ ..+|.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 334444455555555555555555432 22 2444555555555555555555555544 11111 12445
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
.+..++...|++++|++.++++++..|
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 555666666777777777777766666
No 175
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=4.7e-06 Score=63.62 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC---CHhHHHHHH
Q 038522 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP---TASLWSAIL 510 (590)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~ 510 (590)
...+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 334555566667777777777777777654 1234566677777777888888888888776 3333 466777888
Q ss_pred HHHHhc-CCchHHHHHHHHHhcCCCCCc
Q 038522 511 GACSIY-GNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 511 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 537 (590)
..+... |++++|++.++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888888 888888888888888888554
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=2.2e-06 Score=70.73 Aligned_cols=129 Identities=13% Similarity=0.034 Sum_probs=87.3
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCC----Hh
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM----NIKPT----AS 504 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 504 (590)
++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555555666666777777666665543111111 135666777777788888887777765 11111 34
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDMEP------EKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+..+...+...|++++|...++++++..+ .....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777788888999999998888885432 2245688899999999999999999998766
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.32 E-value=1.8e-06 Score=68.24 Aligned_cols=92 Identities=8% Similarity=0.048 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-------cchHHHHH
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-------SVNYVVLS 544 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~ 544 (590)
+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++++..|.+ +.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 344444455555555555555544 11 2233444444445555555555555555555444433 44455555
Q ss_pred HHHHhcCChHHHHHHHHHhhh
Q 038522 545 NIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 545 ~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.+|...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555444
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00039 Score=64.20 Aligned_cols=231 Identities=7% Similarity=-0.021 Sum_probs=154.9
Q ss_pred hcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchh-hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-C-Ch
Q 038522 310 RDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVA-SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS-G-EI 385 (590)
Q Consensus 310 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 385 (590)
+.+...++|+.++.+++.. .|+. ..++.--..+...+ .++++..+++.+....++ +..+++.-..++.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3344366778877777765 4443 33444444444555 477788888777776655 566666666666665 6 88
Q ss_pred HHHHHHHHhcCCCCc---chHHHHHHHHHhcCCch--------HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC----
Q 038522 386 ADANRAFDEMGDKNV---ISWTSLIAGYAKHGYGH--------EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL---- 450 (590)
Q Consensus 386 ~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---- 450 (590)
++++.+++.+.+.++ .+|+--.-.+.+.+.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 999999999886444 45555444555555555 8999999999863 3367777777777777765
Q ss_pred ---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhc-CC-------
Q 038522 451 ---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQL--------------------ESAYNMIRQM-NI------- 499 (590)
Q Consensus 451 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------- 499 (590)
++++++.+++.... .+-|...|+.+-..+.+.|+. .+..+...++ +.
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 68889999888865 233577787777777777654 3344444444 22
Q ss_pred CCCHhHHHHHHHHHHhcCCchHHHHHHHHHh-cCCCCCcchHHHHHHH
Q 038522 500 KPTASLWSAILGACSIYGNTSLGELAARNLF-DMEPEKSVNYVVLSNI 546 (590)
Q Consensus 500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~ 546 (590)
.++...+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 3567788899999999999999999999997 7899766666655543
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=2e-06 Score=80.91 Aligned_cols=119 Identities=7% Similarity=-0.036 Sum_probs=99.8
Q ss_pred ccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----------------HhHHHH
Q 038522 447 HTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----------------ASLWSA 508 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~ 508 (590)
..+++++|...++...+. .| +...+..+...|.+.|++++|+..|+++ ...|+ ...|..
T Consensus 125 ~L~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 345566666666554432 23 3567888899999999999999999998 44454 378899
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..|+++.+..+
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999988654
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.29 E-value=9.4e-05 Score=67.97 Aligned_cols=162 Identities=10% Similarity=0.057 Sum_probs=74.6
Q ss_pred chHHHHHHHHHhcC--CchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC-hHHHHHHHHHHHhhcCCCCChhHHHHH
Q 038522 401 ISWTSLIAGYAKHG--YGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL-TCEGWELFTDMINKYRILPRAEHFSCV 477 (590)
Q Consensus 401 ~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 477 (590)
.+|+.-.-.+.+.+ .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.++.+.+. .+-|...|+..
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R 185 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 34444333344444 2455555555555531 2244444444444444444 35555555555543 12233444443
Q ss_pred HHHHHhc--------------CChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc-----------CCchHHHHHHHHHh
Q 038522 478 VDLFARR--------------GQLESAYNMIRQM-NIKP-TASLWSAILGACSIY-----------GNTSLGELAARNLF 530 (590)
Q Consensus 478 ~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~ 530 (590)
...+.+. +.++++++.+.++ ...| |...|+-+-..+... +.++++++.+++++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 3333332 2345555555555 2222 444444333333222 23456666666666
Q ss_pred cCCCCCcchHHHHHHHHH---hcCChHHHHHHHHHhhh
Q 038522 531 DMEPEKSVNYVVLSNIYT---AAGAWDNARKTRKLMEE 565 (590)
Q Consensus 531 ~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 565 (590)
++.|++...+..++.... ..|..++...++.++.+
T Consensus 266 e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 266 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 666655444444332211 24555666666666654
No 181
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.28 E-value=4.6e-07 Score=69.44 Aligned_cols=93 Identities=13% Similarity=-0.005 Sum_probs=77.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC------cchHH
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK------SVNYV 541 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 541 (590)
+...+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888999999999999887 3334 67788889999999999999999999999999987 77888
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 038522 542 VLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 542 ~l~~~~~~~g~~~~A~~~~~~ 562 (590)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 899999999988888776654
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.27 E-value=9.3e-07 Score=70.87 Aligned_cols=105 Identities=12% Similarity=-0.000 Sum_probs=79.5
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhc-CC----
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPR-------------AEHFSCVVDLFARRGQLESAYNMIRQM-NI---- 499 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 499 (590)
+......+.+.|++++|+..|++..+- .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344455566677777777777777644 333 227778888888889998888888777 44
Q ss_pred ---CCC-HhHH----HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522 500 ---KPT-ASLW----SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN 545 (590)
Q Consensus 500 ---~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 545 (590)
.|+ ...| .....++...|++++|+..|+++++++|++...+..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 775 4577 888899999999999999999999999988777665543
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.27 E-value=0.0004 Score=63.83 Aligned_cols=193 Identities=9% Similarity=0.035 Sum_probs=134.8
Q ss_pred hHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC-chHHHHHH
Q 038522 350 LNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG--EIADANRAFDEMGD---KNVISWTSLIAGYAKHGY-GHEAIELY 423 (590)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~ 423 (590)
++.+..+++.+....++ +..+++.-.-++.+.+ .++++..+++.+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 56677777777776654 5666666666666667 47899999988874 456677777667777787 48999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhhcc--------------CChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhc----
Q 038522 424 KKMKHEGMVPNDVTFLSLLFACSHT--------------GLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARR---- 484 (590)
Q Consensus 424 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~---- 484 (590)
+++.+.. +-|...|+.....+... +.++++++.+...... .| |...|+.+--.+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence 9999863 23566665554444433 4578899999988865 44 566776665555555
Q ss_pred -------CChHHHHHHHHhc-CCCCCHhHHHHHHHHH-----HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 485 -------GQLESAYNMIRQM-NIKPTASLWSAILGAC-----SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 485 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
+.++++++.++++ ...||. .|..+..+. ...|..+++...+.++.+++|.....|..+...+.
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 4578899999888 566764 444333222 24577789999999999999988888887765543
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=5.2e-06 Score=78.96 Aligned_cols=90 Identities=9% Similarity=0.005 Sum_probs=79.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY 547 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 547 (590)
+...+..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888889999999999999999998 5555 5678888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 038522 548 TAAGAWDNARKT 559 (590)
Q Consensus 548 ~~~g~~~~A~~~ 559 (590)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999988887654
No 185
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=5.9e-06 Score=64.26 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=66.8
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHH
Q 038522 438 FLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACS 514 (590)
Q Consensus 438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 514 (590)
+..+...+.+.|++++|...+++..+. .| +...+..+..++...|++++|+..|++. ...| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455666777888888888777754 34 4667777777788888888888888777 4444 4567777888888
Q ss_pred hcCCchHHHHHHHHHhcCCCCCc
Q 038522 515 IYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
..|++++|+..++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888888543
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.22 E-value=1.2e-06 Score=67.81 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=60.9
Q ss_pred cCChHHHHHHHHHHHhhcCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHH
Q 038522 448 TGLTCEGWELFTDMINKYRI-LP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGE 523 (590)
Q Consensus 448 ~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 523 (590)
.|++++|+..|++..+. +. .| +...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777642 10 13 3456667777777778888887777776 3333 4566777777888888888888
Q ss_pred HHHHHHhcCCCCCcchH
Q 038522 524 LAARNLFDMEPEKSVNY 540 (590)
Q Consensus 524 ~~~~~~~~~~p~~~~~~ 540 (590)
..++++++..|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888666543
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.20 E-value=4.6e-06 Score=81.75 Aligned_cols=129 Identities=13% Similarity=0.086 Sum_probs=96.4
Q ss_pred HhhccCChHHHHHHHHHHHhhcC--C---CCC-hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HhHHH
Q 038522 444 ACSHTGLTCEGWELFTDMINKYR--I---LPR-AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPT-ASLWS 507 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 507 (590)
.+...|++++|..++++..+... + .|+ ..+++.|..+|...|++++|..++++. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34567888888888877665421 1 122 457788888888889998888888775 23343 35678
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcch---HHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522 508 AILGACSIYGNTSLGELAARNLFD-----MEPEKSVN---YVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP 572 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (590)
.|...|...|++++|+..++++++ ++|++|.+ ...+..++..+|++++|..++..++++..+..|
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999983 56777665 457788999999999999999999886544444
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.20 E-value=3.7e-06 Score=69.55 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc-chHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS-VNYVVLSNIY 547 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 547 (590)
...+..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|+++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 457778888899999999999999887 4444 567888899999999999999999999999999877 5555555544
Q ss_pred Hh
Q 038522 548 TA 549 (590)
Q Consensus 548 ~~ 549 (590)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.16 E-value=5.9e-06 Score=61.69 Aligned_cols=65 Identities=18% Similarity=0.085 Sum_probs=54.6
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 566 (590)
+...+..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56677788888888888888888888888888888888888888888888888888888877653
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.13 E-value=5.7e-06 Score=63.75 Aligned_cols=63 Identities=16% Similarity=0.088 Sum_probs=33.0
Q ss_pred HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 503 ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|.+.+++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555555555555443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=4.5e-06 Score=78.51 Aligned_cols=118 Identities=8% Similarity=-0.066 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038522 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACS 514 (590)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 514 (590)
...+..+...+.+.|++++|...|++.... .|+... +...|+.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence 455667777888888999999988888754 344321 223444445444332 237888889999
Q ss_pred hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 515 IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 515 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
+.|++++|+..++++++++|.++.+|..++.+|...|++++|++.|+++.+....
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999999998876543
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=8.6e-05 Score=74.73 Aligned_cols=168 Identities=8% Similarity=-0.043 Sum_probs=133.3
Q ss_pred ChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCC----------chHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccC
Q 038522 384 EIADANRAFDEMGD--K-NVISWTSLIAGYAKHGY----------GHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTG 449 (590)
Q Consensus 384 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~ 449 (590)
..++|.+.++++.. | +...|+.--..+...++ ++++++.++++.+. .| +...|..-...+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34677888887763 3 34466666566666666 89999999999985 45 6788888888888888
Q ss_pred --ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc--------
Q 038522 450 --LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG-QLESAYNMIRQM-NIKP-TASLWSAILGACSIY-------- 516 (590)
Q Consensus 450 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-------- 516 (590)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++++.++++ ...| |..+|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999976 2335778888777888888 899999999998 5555 667787777666553
Q ss_pred ------CCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522 517 ------GNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN 555 (590)
Q Consensus 517 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 555 (590)
+.++++++.+.+++..+|++..+|..+.+++...|++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998665
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.2e-05 Score=75.75 Aligned_cols=159 Identities=9% Similarity=0.001 Sum_probs=119.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCc----------------HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPN----------------DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR 470 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 470 (590)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456778999999999999987532211 124677889999999999999999998765333333
Q ss_pred hh----HHHHHHHHHHhcCChHHHHHHHHhc-------CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcC------
Q 038522 471 AE----HFSCVVDLFARRGQLESAYNMIRQM-------NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDM------ 532 (590)
Q Consensus 471 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 532 (590)
.. +.+.+...+...|++++|.+++++. +..+. ..++..+...+...|++++|...++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 2333344455678999999988776 22332 456788899999999999999999998742
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 533 EPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 533 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 233455788999999999999999999998876
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=1.3e-05 Score=58.37 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
...+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|+..++++++.+|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666777777788888888888776 3233 55677778888888888888888888888888888888888888877
Q ss_pred hcC
Q 038522 549 AAG 551 (590)
Q Consensus 549 ~~g 551 (590)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.08 E-value=1.7e-05 Score=57.73 Aligned_cols=74 Identities=16% Similarity=0.060 Sum_probs=63.5
Q ss_pred CCCHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCCc
Q 038522 500 KPTASLWSAILGACSIYGN---TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGY 574 (590)
Q Consensus 500 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 574 (590)
++++..+..+..++...++ .++|...++++++.+|+++.+...++..+...|++++|+..|+++.+.... .|+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 4567778888877764444 799999999999999999999999999999999999999999999998776 6554
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=1.2e-05 Score=76.30 Aligned_cols=67 Identities=10% Similarity=-0.004 Sum_probs=62.0
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|++.++++.+...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999999999999999999999999999999999999999988654
No 197
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.08 E-value=8.4e-06 Score=80.18 Aligned_cols=120 Identities=5% Similarity=-0.054 Sum_probs=97.5
Q ss_pred ccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----------------HhHHHH
Q 038522 447 HTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----------------ASLWSA 508 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~ 508 (590)
..+++++|...|+..... .| ....+..+...|.+.|++++|+..|+++ ...|+ ...|..
T Consensus 246 ~l~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 344555666555544432 22 3556778889999999999999999998 33333 478888
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
+..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|+++.+..+.
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999999886543
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.06 E-value=1.7e-05 Score=65.20 Aligned_cols=131 Identities=12% Similarity=0.019 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC--cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhH
Q 038522 403 WTSLIAGYAKHGYGHEAIELYKKMKHEGM---VP--NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEH 473 (590)
Q Consensus 403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 473 (590)
+..+...+...|++++|+..+++..+... .+ ...++..+...+...|++++|.+.+++..+.....++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444555555555555554443200 00 0134555555666666666666666665543111111 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhc-------CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522 474 FSCVVDLFARRGQLESAYNMIRQM-------NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
+..+...+...|++++|.+.+++. +.++ ....+..+...+...|++++|...+++++++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 555666667777777777776665 1111 12345666777778888888888888777543
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.04 E-value=3.2e-06 Score=67.61 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=59.4
Q ss_pred hcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522 483 RRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN----------TSLGELAARNLFDMEPEKSVNYVVLSNIYTAA 550 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 550 (590)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|+++.+|+.++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555555 2223 44555555555554444 56888889999999998888889999888877
Q ss_pred C-----------ChHHHHHHHHHhhhcCC
Q 038522 551 G-----------AWDNARKTRKLMEERSL 568 (590)
Q Consensus 551 g-----------~~~~A~~~~~~~~~~~~ 568 (590)
| ++++|++.|++..+.++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 4 88888888888877654
No 200
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=3.1e-05 Score=76.51 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=65.9
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 038522 409 GYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQL 487 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (590)
.+.+.|++++|.+.+++..+. .| +...+..+..++.+.|++++|++.+++..+. .+.+...+..+..+|...|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 344556666666666666654 33 4566666666666777777777777666642 122355666666667777777
Q ss_pred HHHHHHHHhc-CCCC-CHhHHHHHHHH--HHhcCCchHHHHHHH
Q 038522 488 ESAYNMIRQM-NIKP-TASLWSAILGA--CSIYGNTSLGELAAR 527 (590)
Q Consensus 488 ~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~ 527 (590)
++|++.++++ ...| +...+..+..+ +...|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777666 2233 23344444444 556677777777777
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.8e-05 Score=59.16 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=63.1
Q ss_pred CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
++...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|++.+++..+....
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 356678888899999999999999999999999999999999999999999999999999999876543
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00013 Score=58.03 Aligned_cols=111 Identities=5% Similarity=-0.142 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHH
Q 038522 450 LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELA 525 (590)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~ 525 (590)
++++|.+.|++..+. + .|+.. |...|...+.+++|.++|++.-..-++..+..+...|.. .+++++|+..
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455555555555543 3 12221 444555555555566666655112345555566666655 5677777777
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhcCC
Q 038522 526 ARNLFDMEPEKSVNYVVLSNIYTA----AGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 526 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 568 (590)
++++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777665 356677777777777 7777777777777766653
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.78 E-value=0.00073 Score=67.99 Aligned_cols=151 Identities=6% Similarity=-0.047 Sum_probs=122.1
Q ss_pred CCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCC----------hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522 414 GYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGL----------TCEGWELFTDMINKYRILPRAEHFSCVVDLFA 482 (590)
Q Consensus 414 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (590)
...++|++.++++.+. .|+ ...|+.--.++...|+ ++++++.++.+.+. .+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3457889999999985 664 4556655556666666 89999999999975 2335778888788888
Q ss_pred hcC--ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC-CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-------
Q 038522 483 RRG--QLESAYNMIRQM-NIKP-TASLWSAILGACSIYG-NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA------- 550 (590)
Q Consensus 483 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 550 (590)
+.| +++++++.++++ ...| +..+|+.-..+....| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 899 679999999999 4444 6778888888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHhhhcCC
Q 038522 551 -------GAWDNARKTRKLMEERSL 568 (590)
Q Consensus 551 -------g~~~~A~~~~~~~~~~~~ 568 (590)
+.+++|++.++++....+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988877554
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.77 E-value=5.8e-05 Score=54.85 Aligned_cols=67 Identities=18% Similarity=0.236 Sum_probs=61.2
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3457788888999999999999999999999999999999999999999999999999999888653
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.65 E-value=0.00015 Score=55.62 Aligned_cols=80 Identities=13% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 453 EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
+|+..+++..+. .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455666666642 1224566777777777777777777777776 3333 45667777777888888888888888888
Q ss_pred cCCC
Q 038522 531 DMEP 534 (590)
Q Consensus 531 ~~~p 534 (590)
+..|
T Consensus 81 ~~~~ 84 (115)
T 2kat_A 81 AAAQ 84 (115)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7776
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.61 E-value=5.5e-05 Score=60.47 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCC----------hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc
Q 038522 450 LTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQ----------LESAYNMIRQM-NIKP-TASLWSAILGACSIY 516 (590)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 516 (590)
.+++|.+.++...+. .| +...|..+..++...++ +++|+..|++. .+.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455555544432 22 34444444444444433 34666666666 4444 345666677776655
Q ss_pred -----------CCchHHHHHHHHHhcCCCCCcchHH
Q 038522 517 -----------GNTSLGELAARNLFDMEPEKSVNYV 541 (590)
Q Consensus 517 -----------~~~~~a~~~~~~~~~~~p~~~~~~~ 541 (590)
|++++|++.|+++++++|++.....
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5899999999999999997654433
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.61 E-value=6.5e-05 Score=55.73 Aligned_cols=81 Identities=9% Similarity=0.090 Sum_probs=57.9
Q ss_pred HHHHHHhcCChHHHHHHHHhc-CCCC-CHh-HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038522 477 VVDLFARRGQLESAYNMIRQM-NIKP-TAS-LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW 553 (590)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 553 (590)
....+.+.|++++|.+.++++ ...| +.. .+..+..++...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 345667788888888888877 3344 456 77778888888888888888888888888877776632 455
Q ss_pred HHHHHHHHHhhh
Q 038522 554 DNARKTRKLMEE 565 (590)
Q Consensus 554 ~~A~~~~~~~~~ 565 (590)
.++...+++..+
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 566666655433
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.0003 Score=68.94 Aligned_cols=123 Identities=12% Similarity=-0.002 Sum_probs=83.4
Q ss_pred HHHhcCCchHHHHHHHHHHHcC---CC---C-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc----C-CCCC-hhHHH
Q 038522 409 GYAKHGYGHEAIELYKKMKHEG---MV---P-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY----R-ILPR-AEHFS 475 (590)
Q Consensus 409 ~~~~~~~~~~a~~~~~~m~~~g---~~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~ 475 (590)
.+...|++++|..++++..+.. +- | ...+++.|...|...|++++|..++++...-+ | ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777888877777765421 12 2 23567778888888888888888877765431 2 1232 45678
Q ss_pred HHHHHHHhcCChHHHHHHHHhc--------C-CCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522 476 CVVDLFARRGQLESAYNMIRQM--------N-IKPTA-SLWSAILGACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 531 (590)
.|...|...|++++|+.+++++ | ..|+. .+.+.+..++...+.+++|+..|+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999888888776 2 22322 3345566677788889999988888764
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.52 E-value=0.00021 Score=68.88 Aligned_cols=82 Identities=7% Similarity=0.013 Sum_probs=59.0
Q ss_pred cCChHHHHHHHHhc---------CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcc---hHHHHHH
Q 038522 484 RGQLESAYNMIRQM---------NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFD-----MEPEKSV---NYVVLSN 545 (590)
Q Consensus 484 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 545 (590)
.|++++|+.++++. ...|+ ..+++.+..+|...|++++|+..++++++ +.|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666554 12222 25677788888888888888888888873 3454444 4888999
Q ss_pred HHHhcCChHHHHHHHHHhhh
Q 038522 546 IYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 546 ~~~~~g~~~~A~~~~~~~~~ 565 (590)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999988866
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.51 E-value=0.00019 Score=53.07 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=56.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSV-NYVVLSNIYTAAGAWDNARKTRKLMEERSLRK 570 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (590)
....+...|++++|+..++++++.+|.++. .+..++.+|...|++++|++.+++..+..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 455677899999999999999999999999 99999999999999999999999998876543
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.51 E-value=0.00013 Score=68.53 Aligned_cols=237 Identities=9% Similarity=0.046 Sum_probs=162.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 038522 64 NLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR 143 (590)
Q Consensus 64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 143 (590)
.+.+|..|..+....+.+.+|++-|-+ ..|+..|..+|.+..+.|.+++-++.+...++..-.| ..=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 456788888888888888887765533 3566778888988888899998888888776654333 334567888888
Q ss_pred cCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC------------------------CCcch
Q 038522 144 MRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER------------------------KDVVS 199 (590)
Q Consensus 144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~ 199 (590)
.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888776655542 46666666778888888888888888776642 36788
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 038522 200 WNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK 279 (590)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (590)
|-.+-.+|...+.+.-|.-.--.++- .|| -...++..|...|.+++...+++.-.... .....+|+.|.-.|++
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 99999999999988877655444431 222 22335566788888888888888766322 3456678888877877
Q ss_pred cCChHHHHHHHHhccC----C-------CccchHHHHHHHHhcCCChHHHH
Q 038522 280 YGSIRSAYQLYRSMLK----T-------DIISCTALISGFARDDNHSKEAF 319 (590)
Q Consensus 280 ~g~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~~a~ 319 (590)
- +.++..+-++.... | ....|..++-.|.+-.+ ++.|.
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE-~DnA~ 324 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE-YDNAI 324 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTC-HHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchh-HHHHH
Confidence 5 44555555444311 1 33457777777777666 66553
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.44 E-value=0.00039 Score=67.10 Aligned_cols=87 Identities=11% Similarity=0.175 Sum_probs=60.2
Q ss_pred HHHHhcCChHHHHHHHHhc------CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcc---hH
Q 038522 479 DLFARRGQLESAYNMIRQM------NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFD-----MEPEKSV---NY 540 (590)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~ 540 (590)
..+.+.|++++|++++++. -+.|+ ..+++.++.+|...|++++|+..++++++ +.|++|. .+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3345566777777776655 11221 24567777788888888888888888773 3444444 47
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 541 VVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 541 ~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+.|+.+|..+|++++|..++++..+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7888888899999998888888765
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.39 E-value=0.00038 Score=51.65 Aligned_cols=65 Identities=5% Similarity=-0.019 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
+...+..+...|...|++++|++.|+++ ...| +...|..+..+|...|++++|+..+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 3556666677777777777777777766 3333 455667777777777777777777777776655
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.39 E-value=0.02 Score=43.26 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=99.5
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 038522 411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESA 490 (590)
Q Consensus 411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 490 (590)
.-.|..++..++..+.... .+..-|+.++--....-+-+-..++++.+-+-+.+ ..+|+....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3457778888888887763 24444555554444555556666677666543222 235555555
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522 491 YNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569 (590)
Q Consensus 491 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 569 (590)
..-+-.++ .+...++..+.....+|.-++-.+++..++...|.+|.....++.+|.+.|+..+|.+++.++-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55555553 234456667777889999999999999987777769999999999999999999999999999999875
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.38 E-value=0.0027 Score=50.32 Aligned_cols=112 Identities=8% Similarity=-0.059 Sum_probs=89.3
Q ss_pred CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHH
Q 038522 414 GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLES 489 (590)
Q Consensus 414 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 489 (590)
+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. .+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999998887 44444 666677778888899999998864 366777888888887 789999
Q ss_pred HHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCC
Q 038522 490 AYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 490 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 534 (590)
|.++|++.-..-++.....+...|.. .+++++|+..++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988223467778888888887 7899999999999988754
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.36 E-value=0.00028 Score=66.34 Aligned_cols=400 Identities=12% Similarity=0.089 Sum_probs=195.7
Q ss_pred ccccccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChH
Q 038522 3 IVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVL 82 (590)
Q Consensus 3 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (590)
|..+....|+..+|++.|-++ -|+..|..++.++.+.|.+++-.+.+.-..+. ..++..=+.|+-+|++.++..
T Consensus 60 LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~ 133 (624)
T 3lvg_A 60 LAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLA 133 (624)
T ss_dssp HHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSS
T ss_pred HHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHH
Confidence 345566667777777766653 45556777777777777777777766655443 334445556777777777655
Q ss_pred HHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHc--------------------CCCCCHhhHHHHHHHHh
Q 038522 83 SARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRS--------------------GVRANQFTYSSALRACA 142 (590)
Q Consensus 83 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p~~~~~~~ll~~~~ 142 (590)
+.++++. .||..-...+.+-|...|.++.|.-+|..+... .-.-+..||..+-.+|.
T Consensus 134 elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv 210 (624)
T 3lvg_A 134 ELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV 210 (624)
T ss_dssp TTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred HHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence 4432221 144444444444444444444443333322110 00124445555555555
Q ss_pred ccC------------------------------chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc
Q 038522 143 RMR------------------------------WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI 192 (590)
Q Consensus 143 ~~~------------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 192 (590)
..+ .+++...+++.-... -.....+|+-|.-.|++- +.++..+.++..
T Consensus 211 d~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 211 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp HSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred CchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 554 444444444444321 123456777777777765 445555554443
Q ss_pred CC----C-------CcchHHHHHHHHHhcCCchHHHHHH-------------HHHHHcCCCCChhhHHHHHHHhccCCCh
Q 038522 193 ER----K-------DVVSWNAMIGGLAMQGFNDDSFWLF-------------RSMMRQGMKPDCFTLGSILRASVGGIEL 248 (590)
Q Consensus 193 ~~----~-------~~~~~~~li~~~~~~~~~~~a~~~~-------------~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 248 (590)
-. | ....|.-++-.|.+-.+++.|.... .+...+ ..|...|-..+.-|....-
T Consensus 289 ~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P- 365 (624)
T 3lvg_A 289 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKP- 365 (624)
T ss_dssp SSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCC-
T ss_pred HHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhCh-
Confidence 22 1 3456788888888877777665431 111111 2333444444444433211
Q ss_pred hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHH-HHHHHHhcCCChHHHHHHHHHHHH
Q 038522 249 MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTA-LISGFARDDNHSKEAFDLFKDMIL 327 (590)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~~ 327 (590)
...-+++..+. ..+.++ ..++.+.+.|++.-....+..+...|...-|. +-..+....+ ++.- +.
T Consensus 366 ~lL~DLL~vL~-prlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEED-y~~L----R~--- 431 (624)
T 3lvg_A 366 LLLNDLLMVLS-PRLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED-YQAL----RT--- 431 (624)
T ss_dssp TTSHHHHHHHC-TTCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTC-CHHH----HH---
T ss_pred HHHHHHHHhcc-ccCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhh-HHHH----HH---
Confidence 01111111110 011111 12334445555555555555554444443333 3334444444 3321 11
Q ss_pred cCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHH
Q 038522 328 KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLI 407 (590)
Q Consensus 328 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~ 407 (590)
.+..|.+-.....|.++ .+ ..-...-..-...|.+.++|.++..+..+= ..|.-.|
T Consensus 432 ------------SId~ydNFD~i~LA~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD-----klykDAi 487 (624)
T 3lvg_A 432 ------------SIDAYDNFDNISLAQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCKKD-----SLYKDAM 487 (624)
T ss_dssp ------------TTSSCCCSCTTHHHHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT-----CCTTGGG
T ss_pred ------------HHHHhccccHHHHHHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHHhc-----ccHHHHH
Confidence 11122222222222222 11 112233344455677777887776654321 1222234
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHH
Q 038522 408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWEL 457 (590)
Q Consensus 408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 457 (590)
......|+.+-|.++++-..+.| +...|...+-.|...=+++-++++
T Consensus 488 etAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 488 QYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 44456777888888888887755 445666777777776666666654
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0018 Score=59.73 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=41.3
Q ss_pred CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+.++.++..+...+...|+++.|...+++++.++| +...|..++.++.-.|++++|.+.+++....++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 33455555555555555666666666666666665 455556666666666666666666666655443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.27 E-value=0.0055 Score=56.54 Aligned_cols=138 Identities=10% Similarity=0.040 Sum_probs=90.8
Q ss_pred CCcchHHHHHHHHHh--cC---CchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhc---cC-----ChHHHHHHHHHHHh
Q 038522 398 KNVISWTSLIAGYAK--HG---YGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSH---TG-----LTCEGWELFTDMIN 463 (590)
Q Consensus 398 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~---~~-----~~~~a~~~~~~~~~ 463 (590)
.+...|...+++... .+ ...+|..+|++..+. .|+ ...+..+..++.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 356666666654432 22 346788888888875 664 3444443333321 11 11111112222111
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 464 KYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 464 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
....+.+...+..+...+...|++++|...++++ .+.|+...|..+...+...|++++|.+.+++++.++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 1123556778888877788889999999999998 5558888888888899999999999999999999999543
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.22 E-value=0.00092 Score=58.90 Aligned_cols=87 Identities=9% Similarity=0.108 Sum_probs=62.1
Q ss_pred HHHHHHHHhc-CCCCC---HhHHHHHHHHHHh-----cCCchHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CChHHH
Q 038522 488 ESAYNMIRQM-NIKPT---ASLWSAILGACSI-----YGNTSLGELAARNLFDMEPEK-SVNYVVLSNIYTAA-GAWDNA 556 (590)
Q Consensus 488 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 556 (590)
.+|...+++. .+.|+ ...|..+...|.. -|+.++|.+.|+++++++|+. ...+..++..++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555555 45555 4466777777766 378888888888888888854 88888888888774 888888
Q ss_pred HHHHHHhhhcCCccCCCc
Q 038522 557 RKTRKLMEERSLRKNPGY 574 (590)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~ 574 (590)
.+++++.....++.+|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 888888888777755543
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.12 E-value=0.001 Score=52.55 Aligned_cols=91 Identities=7% Similarity=-0.100 Sum_probs=63.6
Q ss_pred CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhc-CCC-C--CHhHHHHHHHHHHhcCCchH
Q 038522 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG---QLESAYNMIRQM-NIK-P--TASLWSAILGACSIYGNTSL 521 (590)
Q Consensus 449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 521 (590)
.....+.+.|.+.... + .++..+.-.+..++.+.+ +.++++.++++. ... | +...+-.+.-+|.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3455666666666553 3 367777777778888877 556888888877 223 5 34566667777888888888
Q ss_pred HHHHHHHHhcCCCCCcchHH
Q 038522 522 GELAARNLFDMEPEKSVNYV 541 (590)
Q Consensus 522 a~~~~~~~~~~~p~~~~~~~ 541 (590)
|++.++++++.+|++..+..
T Consensus 90 A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHH
Confidence 88888888888886655443
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.0029 Score=60.92 Aligned_cols=95 Identities=13% Similarity=0.031 Sum_probs=67.2
Q ss_pred ccCChHHHHHHHHHHHhhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCCH-hHHHHHH
Q 038522 447 HTGLTCEGWELFTDMINKY--RILPR----AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPTA-SLWSAIL 510 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 510 (590)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4467788888877766532 12222 456778888888888888888888776 234433 4678888
Q ss_pred HHHHhcCCchHHHHHHHHHhc-----CCCCCcchHH
Q 038522 511 GACSIYGNTSLGELAARNLFD-----MEPEKSVNYV 541 (590)
Q Consensus 511 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 541 (590)
..|...|++++|+..++++++ ++|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 899999999999999999884 5676665543
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.99 E-value=0.0041 Score=46.26 Aligned_cols=75 Identities=15% Similarity=0.082 Sum_probs=57.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhc-----C----CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522 470 RAEHFSCVVDLFARRGQLESAYNMIRQM-----N----IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY 540 (590)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 540 (590)
+..-+-.+...+.+.|++..|..+|+.+ . -.+....+..+..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556777778888888888888776 1 123456788888999999999999999999999999887776
Q ss_pred HHHH
Q 038522 541 VVLS 544 (590)
Q Consensus 541 ~~l~ 544 (590)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6554
No 223
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.98 E-value=0.21 Score=50.30 Aligned_cols=317 Identities=8% Similarity=-0.029 Sum_probs=151.2
Q ss_pred HHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcC--CchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHH
Q 038522 176 YAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQG--FNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQ 253 (590)
Q Consensus 176 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 253 (590)
..+.|++..+..+...+.......|-..-..-...+ ..+++...+.+-. |.+.....-..-+..+.+.+++.....
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~~~l~ 93 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWRGLLA 93 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHHHHHH
Confidence 345688888888877765422222221111111111 2333333333211 111111122333445555666665554
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038522 254 IHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM---LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKM 330 (590)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~ 330 (590)
++.. .+.+...-.....+....|+...|......+ ....+..+..++..+.+.|.
T Consensus 94 ~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~----------------- 151 (618)
T 1qsa_A 94 FSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK----------------- 151 (618)
T ss_dssp HCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC-----------------
T ss_pred hccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC-----------------
Confidence 3332 2334444445566666777766666555554 12223334444444443332
Q ss_pred CCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcch-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcch---HHHH
Q 038522 331 GIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDA-AVGNALIDMYAKSGEIADANRAFDEMGDKNVIS---WTSL 406 (590)
Q Consensus 331 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l 406 (590)
..+...+..+ ......|+...|..+...+ +++. .....++..+. +...+....... .++... +...
T Consensus 152 lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 152 QDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVA 221 (618)
T ss_dssp SCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHH
Confidence 2111122111 2222333444444433221 1222 22233333332 233333333332 222221 1112
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCcHHH----HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVT----FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA 482 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 482 (590)
+.-+.+ ++++.|...|....+.+ ..+... ...+.......+...++...+...... .++.....-.+....
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Al 296 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMAL 296 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHH
Confidence 223333 37889999998886543 223222 223333344445355666666665432 344444555556666
Q ss_pred hcCChHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522 483 RRGQLESAYNMIRQMNIKP--TASLWSAILGACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 483 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 531 (590)
+.|+++.|...|+.+...+ .....--+.++....|+.++|..+|+.+.+
T Consensus 297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7899999999999994332 222234455667788999999999999985
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.97 E-value=0.0057 Score=58.99 Aligned_cols=101 Identities=15% Similarity=0.030 Sum_probs=72.2
Q ss_pred HHHhhccCChHHHHHHHHHHHhhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HhH
Q 038522 442 LFACSHTGLTCEGWELFTDMINKY--RILPR----AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPT-ASL 505 (590)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 505 (590)
+..+...|++++|..++++..+.. -+.|+ ..+++.+..+|...|++++|+.++++. ...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888776532 12222 456778888888888888888888766 23343 346
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcchHHH
Q 038522 506 WSAILGACSIYGNTSLGELAARNLFD-----MEPEKSVNYVV 542 (590)
Q Consensus 506 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 542 (590)
++.|...|...|++++|+..++++++ ++|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 78888999999999999999999983 57777666443
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.66 E-value=0.019 Score=41.47 Aligned_cols=68 Identities=12% Similarity=0.006 Sum_probs=50.3
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522 468 LPRAEHFSCVVDLFARRGQ---LESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE 535 (590)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 535 (590)
+.+...+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777777765544 67888888877 4445 4566777778888888888888888888888886
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.0082 Score=47.37 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC---ChHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHH
Q 038522 418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTG---LTCEGWELFTDMINKYRILP--RAEHFSCVVDLFARRGQLESAYN 492 (590)
Q Consensus 418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 492 (590)
.+.+.|.+..+.| .++..+.-.+..++.+.+ +.++++.+++.+.+. . .| +...+-.+.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444433 244444444444555544 344555555555544 1 12 23334444445555555555555
Q ss_pred HHHhc-CCCCC
Q 038522 493 MIRQM-NIKPT 502 (590)
Q Consensus 493 ~~~~~-~~~p~ 502 (590)
.++.+ .+.|+
T Consensus 93 y~~~lL~ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHhcCCC
Confidence 55555 44443
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.40 E-value=0.025 Score=60.21 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
...|..+.+.+.+.|+++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555555555555555555544
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.37 E-value=0.14 Score=54.27 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=97.0
Q ss_pred HHHHhcCChHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 104 SGYAQNGYDENALL-VFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 104 ~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
......+++++|.+ ++.. + |+......+++.+.+.|..+.|.++.+... .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 34455677777765 4421 1 112223556666677777777765552111 113345678999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhC
Q 038522 183 EDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLG 262 (590)
Q Consensus 183 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 262 (590)
++|.++.+.+. +...|..+...+.+.|+++.|.+.|..+.+ |..+...+...++.+...++-+.....|
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999887764 567899999999999999999999988753 3344444555667666666555555443
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 263 LESSNKLTGSLIDVYAKYGSIRSAYQLYRSM 293 (590)
Q Consensus 263 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 293 (590)
-++.-..+|.+.|++++|.+++.++
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233344566677777777776554
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.36 E-value=0.02 Score=44.39 Aligned_cols=106 Identities=11% Similarity=0.057 Sum_probs=61.0
Q ss_pred cHHHHHHHHHHhhccCCh------HHHHHHHHHHHhhcCCCCCh-hHHHHHHHH------HHhcCChHHHHHHHHhc-CC
Q 038522 434 NDVTFLSLLFACSHTGLT------CEGWELFTDMINKYRILPRA-EHFSCVVDL------FARRGQLESAYNMIRQM-NI 499 (590)
Q Consensus 434 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~-~~ 499 (590)
|..+|...+....+.|++ ++.+++|++... .++|+. ..+...|.. +...++.++|.++|+.+ .+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 455555555555555665 566666666665 344442 112222211 12346777777777777 11
Q ss_pred -CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522 500 -KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV 541 (590)
Q Consensus 500 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 541 (590)
+-=...|-....--.++|+.+.|.+++.+++++.|.+...+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 111445555555556888888888888888888885544433
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.23 E-value=0.018 Score=43.67 Aligned_cols=87 Identities=7% Similarity=-0.091 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhc-CCC-C--CHhHHHHHHHHHHhcCCchHHH
Q 038522 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES---AYNMIRQM-NIK-P--TASLWSAILGACSIYGNTSLGE 523 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~ 523 (590)
...+.+-|.+.... +. |+..+--.+..++.+..+... ++.++++. ... | .....-.+.-++.+.|+++.|+
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33444444444332 22 444444444555555544433 55555554 211 2 1223334444555556666666
Q ss_pred HHHHHHhcCCCCCcch
Q 038522 524 LAARNLFDMEPEKSVN 539 (590)
Q Consensus 524 ~~~~~~~~~~p~~~~~ 539 (590)
+.++.+++.+|.|..+
T Consensus 95 ~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHH
Confidence 6666666666644433
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.21 E-value=0.018 Score=42.67 Aligned_cols=67 Identities=18% Similarity=-0.042 Sum_probs=56.0
Q ss_pred CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 502 TASLWSAILGACSIYGNTSLGELAARNLFDME-------PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
+......+...+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44456678888999999999999999998642 34567799999999999999999999999887543
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.01 E-value=0.18 Score=40.85 Aligned_cols=129 Identities=13% Similarity=0.054 Sum_probs=88.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence 34456788999999887765 4788899999999999999999998888763 3455566777788
Q ss_pred hHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHHHHHHHHh
Q 038522 487 LESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY-TAAGAWDNARKTRKLM 563 (590)
Q Consensus 487 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 563 (590)
.+.-.++-+.....- -++.....+...|+++++.+++.+.-+. . ++..+ ..-|-.+.|.++++++
T Consensus 76 ~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~-eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSL--------P-LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCH--------H-HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCCh--------H-HHHHHHHHcCcHHHHHHHHHHh
Confidence 776665554441111 2444555566789999999988754331 1 22222 2357778888888776
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.62 Score=37.74 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHH
Q 038522 376 IDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGW 455 (590)
Q Consensus 376 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 455 (590)
.+.....|+++.|.++.+++ .+...|..|.......|+++-|.+.|++... +..+.-.|...|+.+...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34456779999999988877 4677899999999999999999999987653 233444456667777666
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522 456 ELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLF 530 (590)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 530 (590)
++-+....+ | -++.-...+.-.|+++++.++|.+.+.-|... ......|-.+.|.++.+.+-
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 655554433 2 13444455677899999999998886433211 12234567777887777653
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.76 E-value=0.045 Score=42.50 Aligned_cols=102 Identities=6% Similarity=-0.039 Sum_probs=75.8
Q ss_pred CChhHHHHHHHHHHhcCCh------HHHHHHHHhc--CCCCCHh-HHHHHHH------HHHhcCCchHHHHHHHHHhcCC
Q 038522 469 PRAEHFSCVVDLFARRGQL------ESAYNMIRQM--NIKPTAS-LWSAILG------ACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~p~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
.|.++|-..+...-+.|++ ++..++|+++ .++|+.. .|...+. .+...+++++|.++|+.++.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3567777777777777887 7888888887 5666531 2222221 1234589999999999998775
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522 534 PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK 570 (590)
Q Consensus 534 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (590)
..-+..|...+..-.++|+...|++++......+.+|
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 5556778888899999999999999999988876544
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.059 Score=55.21 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=50.7
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME 564 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 564 (590)
..-|...|+++.|+.+.++++...|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3446678999999999999999999999999999999999999999999999884
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.52 E-value=0.033 Score=49.18 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhc-CCCCC--HhHHHHHHHHHHh-cCCc
Q 038522 452 CEGWELFTDMINKYRILPR---AEHFSCVVDLFARR-----GQLESAYNMIRQM-NIKPT--ASLWSAILGACSI-YGNT 519 (590)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~ 519 (590)
..|...+++..+ +.|+ ...|..+...|... |+.++|.+.|++. .+.|+ ..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 456666666664 3666 45677777777774 8888888888887 55663 5666666776666 4888
Q ss_pred hHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522 520 SLGELAARNLFDMEPEK-SVNYVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 520 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
+.+.+.+++++...|.. |. .. +...++-++|..++.++
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~--~~----lan~~~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPH--NK----LLVILSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSS--CH----HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCC--hh----HHHHHHHHHHHHHHHHh
Confidence 88899999988887742 22 12 23334456666666654
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.50 E-value=0.15 Score=38.66 Aligned_cols=68 Identities=10% Similarity=-0.097 Sum_probs=39.0
Q ss_pred CCHhHHHHHHHHHHhcCCchH---HHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522 501 PTASLWSAILGACSIYGNTSL---GELAARNLFDME-P-EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568 (590)
Q Consensus 501 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 568 (590)
|+..+--.+.+++.+.++... ++.+++.+.+.+ | ......+.|+.++.+.|++++|++.++.+.+..+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 555555555555555554443 666666666554 4 3445556666666666666666666666655443
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.16 E-value=3.8 Score=43.05 Aligned_cols=265 Identities=10% Similarity=0.010 Sum_probs=132.0
Q ss_pred HhccCCChhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccC-CC----------ccchHHHHHH
Q 038522 241 ASVGGIELMKISQIHDLIIKLG--LESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK-TD----------IISCTALISG 307 (590)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~----------~~~~~~l~~~ 307 (590)
+....|+.+++..++......+ -.+....-..+.-+....|..+++..++..... ++ ...-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3556677777777666554321 111222333444455666666667766665432 12 1111222233
Q ss_pred HHhcCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCh
Q 038522 308 FARDDNHSKEAFDLFKDMILKKMGIDDVILC--LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI 385 (590)
Q Consensus 308 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 385 (590)
+.-.|..-+++.+.+..++...- +...... .+-..+.-.|+-+....++..+.+.. .-+..-...+.-++.-.|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 33333323677777777765321 1111111 12222345566666677776665532 11222222222333356777
Q ss_pred HHHHHHHHhcCC-CCcc-hHH---HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHH
Q 038522 386 ADANRAFDEMGD-KNVI-SWT---SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTD 460 (590)
Q Consensus 386 ~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 460 (590)
+.+..+++.+.. .++. -|. ++.-+|+..|+......+++.+.+. ...+......+.-++...|+.+.+.++++.
T Consensus 541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 777777666552 3332 232 2344566677776666688877763 222333333333344456666666777765
Q ss_pred HHhhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhcCCCCCHhHHHHHH
Q 038522 461 MINKYRILPRAEHFSCVVDLFARRGQL-ESAYNMIRQMNIKPTASLWSAIL 510 (590)
Q Consensus 461 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~ 510 (590)
+.+. ..|.+..-..+.-+....|.. .+|.+.+..+...+|..+-...+
T Consensus 620 L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai 668 (963)
T 4ady_A 620 LSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM 668 (963)
T ss_dssp GGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHH
Confidence 5542 234444444444444555554 57777888774456655543333
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.49 E-value=1.2 Score=33.93 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=41.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCC
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRI 467 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 467 (590)
.....+..+...|+-++-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-++ |+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 344556666667777777777776543 24666777777777777777777777777777665 54
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.45 E-value=0.19 Score=38.74 Aligned_cols=72 Identities=8% Similarity=0.049 Sum_probs=44.6
Q ss_pred CCChhHHHHHHHHHHhcCCh---HHHHHHHHhc-CCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522 468 LPRAEHFSCVVDLFARRGQL---ESAYNMIRQM-NIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 468 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 539 (590)
.|+..+--.+..++.+..+. .+++.++++. ...| .....-.+.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 45555555566666666543 3566666666 2233 23344555667777788888888888887777765443
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.30 E-value=0.22 Score=39.65 Aligned_cols=125 Identities=13% Similarity=0.068 Sum_probs=64.3
Q ss_pred cCCCCcHH--HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhc--
Q 038522 429 EGMVPNDV--TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-------EHFSCVVDLFARRGQLESAYNMIRQM-- 497 (590)
Q Consensus 429 ~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 497 (590)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++.+|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45556433 33344556667777887777776655432333332 24556667777777777777777764
Q ss_pred --CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 498 --NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 498 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
..-+ +..+...+. . ...... -... +.+...-+-++.||.+.|++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCcccccc-c---cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111 111110110 0 000000 0111 22445677799999999999999999997644
No 242
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.19 E-value=0.096 Score=39.80 Aligned_cols=71 Identities=8% Similarity=0.056 Sum_probs=40.4
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHHhc-CCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522 469 PRAEHFSCVVDLFARRGQL---ESAYNMIRQM-NIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 539 (590)
|+..+--.+..++.+..+. .+++.++++. ...| ....+-.+.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444455555555433 3566666655 2223 23445555566677777777777777777777755444
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.35 E-value=4.4 Score=36.52 Aligned_cols=112 Identities=9% Similarity=-0.015 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH----HHHHHHcCCCCChhhHHHHHHHhcc
Q 038522 169 KSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWL----FRSMMRQGMKPDCFTLGSILRASVG 244 (590)
Q Consensus 169 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~ 244 (590)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++...+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455667888888888887644 23456667777666664 4555667888888888888877765
Q ss_pred CCChh-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522 245 GIELM-KISQIHDLIIK----LG--LESSNKLTGSLIDVYAKYGSIRSAYQLYR 291 (590)
Q Consensus 245 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 291 (590)
...-+ .-.++++.+++ .| ..-++.....+...|.+.|++.+|+.-|-
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 33211 22444444443 33 22466788889999999999999988765
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.86 E-value=11 Score=39.75 Aligned_cols=253 Identities=11% Similarity=-0.003 Sum_probs=131.6
Q ss_pred HHHHHhcCChHHHHHHHHhccCC----Ccc--chHHHHHHHHhcCCChHHHHHHHHHHHHcCC--CCC---HHHH--HHH
Q 038522 274 IDVYAKYGSIRSAYQLYRSMLKT----DII--SCTALISGFARDDNHSKEAFDLFKDMILKKM--GID---DVIL--CLM 340 (590)
Q Consensus 274 ~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~--~p~---~~~~--~~l 340 (590)
.-+....|+.++++.+++..... +.. .-..+.-+....|. .+++..++...+...- .-+ ...- ..+
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~-~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF-GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 33466788889999999887642 211 12223344555665 5578888887665321 111 1111 111
Q ss_pred HHHHhchhh-hHhHHHHHHHHHHhCCCcchh--HHHHHHHHHHhcCChHHHHHHHHhcCC-CCcc--hHHHHHHHHHhcC
Q 038522 341 LNICANVAS-LNLGRQIHAFAFKYQSSYDAA--VGNALIDMYAKSGEIADANRAFDEMGD-KNVI--SWTSLIAGYAKHG 414 (590)
Q Consensus 341 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~ 414 (590)
--+....|. -+.+...+..+..... +... .-.++...+.-.|+.+....++..+.+ .+.. -.-.+.-++...|
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence 112222222 1233444444333221 1111 112333344566777777777766542 2222 2333444555788
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHH--HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 038522 415 YGHEAIELYKKMKHEGMVPNDVTF--LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYN 492 (590)
Q Consensus 415 ~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 492 (590)
+.+.+..+++.+... ..|....- ..+.-+|+..|+.....+++..+.+. ...++.-...+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 999998888888763 23322222 23344677888987777788888763 22233333333334455777777777
Q ss_pred HHHhcCCCCCHhHH--HHHHHHHHhcCCc-hHHHHHHHHHhc
Q 038522 493 MIRQMNIKPTASLW--SAILGACSIYGNT-SLGELAARNLFD 531 (590)
Q Consensus 493 ~~~~~~~~p~~~~~--~~l~~~~~~~~~~-~~a~~~~~~~~~ 531 (590)
+++.+....|+.+- ..+..+....|+. ..+...+..+..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77766222333333 3333333344444 567777777763
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.60 E-value=0.21 Score=47.39 Aligned_cols=58 Identities=16% Similarity=0.028 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
.++.++...|+++.++..++.++..+|-+...|..|..+|.+.|+..+|++.|+.+.+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666666666666666543
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.13 E-value=3.2 Score=39.98 Aligned_cols=91 Identities=11% Similarity=0.190 Sum_probs=60.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhc-----CCCCC---HhHHHHHHHHHHhcCCchHHHHHHHHHhc---CCCCCc----ch
Q 038522 475 SCVVDLFARRGQLESAYNMIRQM-----NIKPT---ASLWSAILGACSIYGNTSLGELAARNLFD---MEPEKS----VN 539 (590)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~----~~ 539 (590)
..|...|...|++.+|.+++..+ +..+. ...+...++.|...+++.+|..+++++.. ..|.++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667777888888888888776 22222 23455566777888888888888887641 112122 34
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522 540 YVVLSNIYTAAGAWDNARKTRKLMEE 565 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 565 (590)
+...+..+...++|.+|-+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56677778888888888877776654
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.59 E-value=0.84 Score=36.33 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCc-------HHHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522 402 SWTSLIAGYAKHGYGHEAIELYKKMKHEG-MVPN-------DVTFLSLLFACSHTGLTCEGWELFTDMINK 464 (590)
Q Consensus 402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (590)
.+-.-+..+...+.++.|.-+.+.+.... ..|+ ..++..+.+++...+++..|...|++....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44455777888999999998888765421 2333 235677788999999999999999997543
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.18 E-value=3.7 Score=29.09 Aligned_cols=88 Identities=14% Similarity=0.051 Sum_probs=65.6
Q ss_pred cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 038522 44 KAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAML 123 (590)
Q Consensus 44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 123 (590)
...++|..|-+.+...+. ...+-..-+..+..+|++++|..+.+.+.-||...|-+|-. .+.|-.+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 467889999888887663 33333334456778999999999999999999999987766 57788888888887887
Q ss_pred HcCCCCCHhhHHH
Q 038522 124 RSGVRANQFTYSS 136 (590)
Q Consensus 124 ~~~~~p~~~~~~~ 136 (590)
.+| .|....|..
T Consensus 96 ~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 96 GSS-DPALADFAA 107 (115)
T ss_dssp TCS-SHHHHHHHH
T ss_pred hCC-CHHHHHHHH
Confidence 765 455555543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.05 E-value=4.7 Score=31.13 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHhhccCC---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC
Q 038522 433 PNDVTFLSLLFACSHTGL---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT 502 (590)
Q Consensus 433 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 502 (590)
|+..+--.+..++.+..+ ..+++.+++.+.+. +-.-.....-.|.-++.+.|++++|.++.+.+ ...|+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 444443334444444332 23444555555443 11112233334444555555555555555554 44443
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.90 E-value=11 Score=33.99 Aligned_cols=166 Identities=12% Similarity=0.102 Sum_probs=89.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHhch
Q 038522 272 SLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFD----LFKDMILKKMGIDDVILCLMLNICANV 347 (590)
Q Consensus 272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~ll~~~~~~ 347 (590)
++..-|.+.+++++|.+++..- ...+.+.++ ...|-+ +++-..+.+++++......++..+...
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q-~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQ-GGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCC-cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3444466677777777765432 223334444 444433 344444556777777777666665442
Q ss_pred hhhH-hHHHHHHHHH----HhC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhc---CCch
Q 038522 348 ASLN-LGRQIHAFAF----KYQ--SSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKH---GYGH 417 (590)
Q Consensus 348 ~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 417 (590)
..-+ .-..+.+.++ +.| ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 2111 1123333332 232 2347888899999999999999999887633222333443333322222 2111
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522 418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINK 464 (590)
Q Consensus 418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 464 (590)
+ ++...-..++ .|.-.|+...|..+++...++
T Consensus 186 e--------------~dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 T--------------VAEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred h--------------HHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 1 1122222233 355678899999998887654
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.85 E-value=4 Score=28.98 Aligned_cols=89 Identities=15% Similarity=0.152 Sum_probs=65.1
Q ss_pred ccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHH
Q 038522 43 KKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAM 122 (590)
Q Consensus 43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 122 (590)
..+.++|..|-+.+...+. ...+-..-+..+..+|++++|..+.+.+.-||...|-+|-. .+.|-.+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3467889999888887663 33333334456778999999999999999999999988766 4677778888777777
Q ss_pred HHcCCCCCHhhHHH
Q 038522 123 LRSGVRANQFTYSS 136 (590)
Q Consensus 123 ~~~~~~p~~~~~~~ 136 (590)
..+| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7665 355555543
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.82 E-value=11 Score=34.13 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH----HHHHHcCCCCChhhHHHHHHHhc
Q 038522 168 VKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLF----RSMMRQGMKPDCFTLGSILRASV 243 (590)
Q Consensus 168 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 243 (590)
+|.++..-|.+.+++++|.+++.. -...+.+.|+...+.++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668888888888887643 234566677776665554 55567788899888888888776
Q ss_pred cCCChh-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522 244 GGIELM-KISQIHDLIIK----LG--LESSNKLTGSLIDVYAKYGSIRSAYQLYR 291 (590)
Q Consensus 244 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 291 (590)
....-+ .-..+.+.+++ .| ..-++.....+...|.+.+++.+|+.-|-
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 655322 22334444443 33 33466777888889999999999988773
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.45 E-value=3.1 Score=29.68 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=49.7
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522 415 YGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD 479 (590)
Q Consensus 415 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 479 (590)
+.-++.+-++.+....+.|++......+.+|.+.+++..|..+++.++.+-+. ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 34456777777888888999999999999999999999999999999876333 3456776664
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.76 E-value=20 Score=34.41 Aligned_cols=185 Identities=10% Similarity=0.080 Sum_probs=117.5
Q ss_pred CCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh-CCCcch--hHHHHHHHHHHhcC
Q 038522 312 DNHSKEAFDLFKDMILK-----KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKY-QSSYDA--AVGNALIDMYAKSG 383 (590)
Q Consensus 312 ~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~~ 383 (590)
++ +++|++.+..+.+. ...........++..|...++++...+.+..+.+. |..+.. .+.+.++.......
T Consensus 30 ~~-~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 ND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HH-HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CC-HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 56 88888887766543 23445677888999999999999988877766543 332221 11122233333333
Q ss_pred ChH--HHHHHHHhcCC---CCc-------chHHHHHHHHHhcCCchHHHHHHHHHHHc--CCCCc---HHHHHHHHHHhh
Q 038522 384 EIA--DANRAFDEMGD---KNV-------ISWTSLIAGYAKHGYGHEAIELYKKMKHE--GMVPN---DVTFLSLLFACS 446 (590)
Q Consensus 384 ~~~--~A~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~ 446 (590)
..+ .-..+.+.+.. .-. .....|...+...|++.+|..++.++... |..+. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322 23334444332 111 12355778888999999999999998642 32222 245666778889
Q ss_pred ccCChHHHHHHHHHHHhhc-CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 447 HTGLTCEGWELFTDMINKY-RILPR----AEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 447 ~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
..+++..|..++.++..+. ...++ ...+...+..+...+++.+|-+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999875421 12222 245667777888889999998887665
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.14 E-value=20 Score=33.63 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=11.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKH 428 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~ 428 (590)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555555554443
No 256
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.97 E-value=6.5 Score=27.90 Aligned_cols=86 Identities=9% Similarity=0.031 Sum_probs=59.7
Q ss_pred chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR 225 (590)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (590)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|..+.+..-+..+..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666543 33344444567788999999999999998889888877654 477887888877777776
Q ss_pred cCCCCChhhHH
Q 038522 226 QGMKPDCFTLG 236 (590)
Q Consensus 226 ~~~~p~~~~~~ 236 (590)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 44444443
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.82 E-value=18 Score=32.84 Aligned_cols=165 Identities=11% Similarity=0.057 Sum_probs=88.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHhch
Q 038522 272 SLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAF----DLFKDMILKKMGIDDVILCLMLNICANV 347 (590)
Q Consensus 272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~----~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 347 (590)
++..-|.+.+++++|.+++-.- ...+.+.++ ...+- -+++-..+.++++|......++..+...
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q-~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQ-GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTC-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCC-cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444466677777777665332 122333344 33333 3334445556777777766666666544
Q ss_pred hhhH-hHHHHHHHH----HHhC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038522 348 ASLN-LGRQIHAFA----FKYQ--SSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAI 420 (590)
Q Consensus 348 ~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 420 (590)
..-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|...|-.-.++....+..++.-+...+...
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~--- 184 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH--- 184 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG---
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc---
Confidence 3211 112222222 2233 34477888899999999999999999884322223345544443333322211
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522 421 ELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 421 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 463 (590)
.++...-..++ -|...++...|..+++...+
T Consensus 185 -----------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -----------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 12223333333 35556788888887776664
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.72 E-value=4 Score=41.98 Aligned_cols=51 Identities=12% Similarity=0.006 Sum_probs=32.3
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQMN 498 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 498 (590)
|...|+++-|+++-++.... .|+ ..+|..|..+|...|+++.|+-.+..++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44566666666666666643 443 5566666677777777777766666664
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.65 E-value=3.5 Score=45.39 Aligned_cols=62 Identities=8% Similarity=-0.125 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhcCCC-CCc----chHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522 506 WSAILGACSIYGNTSLGELAARNLFDMEP-EKS----VNYVVLSNIYTAAGAWDNARKTRKLMEERS 567 (590)
Q Consensus 506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 567 (590)
|..++..+.+.+.++.+.++.+.+++..+ ++. ..|..+...+...|++++|-..+-.+....
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 45566666677777777777777775433 222 145666777777777777777776555433
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.64 E-value=1.3 Score=38.49 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=34.2
Q ss_pred HHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522 480 LFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEP 534 (590)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 534 (590)
.+.+.|++++|++....- ...| |...-..++..++-.|++++|.+-++.+.+++|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 345666677776666554 3333 444455566666677777777777777777776
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.45 E-value=7 Score=27.78 Aligned_cols=86 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522 146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR 225 (590)
Q Consensus 146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (590)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+...-||...|-+|-. .+.|..+.+..-+..+..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666543 33344444567788899999999999998888888877654 366777777777777776
Q ss_pred cCCCCChhhHH
Q 038522 226 QGMKPDCFTLG 236 (590)
Q Consensus 226 ~~~~p~~~~~~ 236 (590)
.| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.24 E-value=19 Score=39.70 Aligned_cols=186 Identities=11% Similarity=0.064 Sum_probs=115.9
Q ss_pred HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC----C---------------
Q 038522 339 LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK----N--------------- 399 (590)
Q Consensus 339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--------------- 399 (590)
.++..+...+..+.+..+.... +.++...-.+..+|...|++++|...|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566666666655543321 224444456778889999999999999887420 0
Q ss_pred -------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH----HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC
Q 038522 400 -------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND----VTFLSLLFACSHTGLTCEGWELFTDMINKYRIL 468 (590)
Q Consensus 400 -------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 468 (590)
..-|..++..+.+.+.++.+.++-+..++..-.-+. ..|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 012567788888899999999988877764322221 24777888999999999999888777643 2
Q ss_pred CChhHHHHHHHHHHhcCChHH------------HHHHHHhc-----CCCCCHhHHHHHHHHHHhcCCch-HHHHHHHHHh
Q 038522 469 PRAEHFSCVVDLFARRGQLES------------AYNMIRQM-----NIKPTASLWSAILGACSIYGNTS-LGELAARNLF 530 (590)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~ 530 (590)
.-...+..|+..++..|..+. ..+++..- .....+.-|..|-.-+...|++. .|...|+.+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 345677778777776655443 33333221 11111223444444445666664 4566777776
Q ss_pred cC
Q 038522 531 DM 532 (590)
Q Consensus 531 ~~ 532 (590)
++
T Consensus 1049 RL 1050 (1139)
T 4fhn_B 1049 RY 1050 (1139)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.88 E-value=7.8 Score=36.51 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=34.8
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
..++..+...|+++++...+..+... .+.+...+..++.+|.+.|+..+|++.|+++
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555666777776666666543 1234556666777777777777776666554
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.68 E-value=7.4 Score=32.13 Aligned_cols=50 Identities=6% Similarity=-0.057 Sum_probs=27.1
Q ss_pred cCChHHHHHHHHhc---CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522 484 RGQLESAYNMIRQM---NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 484 ~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
++...++.++|.-| ++-- -...|......+-..|++.+|.++|+..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 33345555665555 2222 23345555555556666666666666666543
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.43 E-value=3.7 Score=35.76 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=25.2
Q ss_pred hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
..+.|+++++++....-.+. -+-|...-..|+..++-.|++++|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445555555555444432 2234444445555555555555555555444
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.37 E-value=10 Score=28.79 Aligned_cols=76 Identities=11% Similarity=0.057 Sum_probs=52.0
Q ss_pred CCCCcHHHHHHHHHHhhccCC---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhH
Q 038522 430 GMVPNDVTFLSLLFACSHTGL---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASL 505 (590)
Q Consensus 430 g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 505 (590)
+-.|+..|--.+..++.+..+ ..+++.+++++.+. +-.-....+-.|.-++.+.|++++|.+..+.+ ...|+..-
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 335666665556666666554 45688888888865 31113556667778889999999999999888 77776543
Q ss_pred H
Q 038522 506 W 506 (590)
Q Consensus 506 ~ 506 (590)
.
T Consensus 114 A 114 (134)
T 3o48_A 114 V 114 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.56 E-value=7.5 Score=29.50 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522 417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD 479 (590)
Q Consensus 417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 479 (590)
-+..+-++.+....+.|++......+.+|-+.+++..|..+++-++.+- .+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 3556667777778889999999999999999999999999999998863 334556777764
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=81.76 E-value=14 Score=28.95 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=34.7
Q ss_pred HHHHHHHHHh--cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522 521 LGELAARNLF--DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK 570 (590)
Q Consensus 521 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 570 (590)
.+..+|+.+. +++-..+..|...+..+...|++++|.++++.-.+++-+|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3667777766 3445566677777777888888888888887766665544
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.38 E-value=24 Score=29.36 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHH
Q 038522 265 SSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326 (590)
Q Consensus 265 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 326 (590)
++..+-...+.++.+.|+.+....+...+..++...-...+.++.+.+. .++...+..+.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l 183 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG--ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--hhHHHHHHHHH
Confidence 3333444444444444443322222222233333333333444444333 33444444443
No 270
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.00 E-value=24 Score=29.09 Aligned_cols=141 Identities=15% Similarity=0.100 Sum_probs=60.5
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038522 63 SNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACA 142 (590)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 142 (590)
++.......+..+.+.|+.+....+.+.+..++...-...+.++...++.+ +...+..+.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344444444445555554444444444444455444444455555555432 2233333332 245555555555555
Q ss_pred ccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 038522 143 RMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQG 211 (590)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 211 (590)
+.++.+....+.. +.+ .++..+-...+.++.+.++.+....+.+.+..++...-...+.++...|
T Consensus 102 ~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 102 QIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5554433332222 221 2344444444455555444333333333333344434444444444444
No 271
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.99 E-value=16 Score=26.09 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHH
Q 038522 315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALID 377 (590)
Q Consensus 315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 377 (590)
.=+..+-++.+....+.|++..+...+++|.+.+++..|.++++.+...--. ...+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 3345555666666667788888888888888888888888887776553322 1344554443
No 272
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.98 E-value=4.7 Score=38.66 Aligned_cols=61 Identities=7% Similarity=-0.041 Sum_probs=35.6
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 437 TFLSLLFACSHTGLTCEGWELFTDMINKY-RILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
+...+..-+.+.|+++.|.+.+.++.... +...-...+-..++.+...+++..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44455666666677777777766666541 11112445555666666666666666666655
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=77.55 E-value=47 Score=31.09 Aligned_cols=285 Identities=11% Similarity=0.028 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC--------CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHH----
Q 038522 270 TGSLIDVYAKYGSIRSAYQLYRSMLKT--------DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVIL---- 337 (590)
Q Consensus 270 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---- 337 (590)
...|...|.+.|+.++..+++.....- .......++..+....+..+.-.++..+.++.. .-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 345777888888888888888776321 122344556666555443444445554444321 0111122
Q ss_pred --HHHHHHHhchhhhHhHHHHHHHHHHhCCC-----cchhHHHHHHHHHHhcCChHHHHHHHHhcCC------CCcchHH
Q 038522 338 --CLMLNICANVASLNLGRQIHAFAFKYQSS-----YDAAVGNALIDMYAKSGEIADANRAFDEMGD------KNVISWT 404 (590)
Q Consensus 338 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~ 404 (590)
..+...+...|++..|..++..+.+.-.. .-..++..-+.+|...+++.++...+..... +++....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 24566667777777777776666552111 1233444455666677777777766655431 2222111
Q ss_pred H----HHHHHH-hcCCchHHHHHHHHHHHc-C--CCCc---HHHHHHHHHHhhccCChHHHHHHHH-HHHhhcCCCCChh
Q 038522 405 S----LIAGYA-KHGYGHEAIELYKKMKHE-G--MVPN---DVTFLSLLFACSHTGLTCEGWELFT-DMINKYRILPRAE 472 (590)
Q Consensus 405 ~----l~~~~~-~~~~~~~a~~~~~~m~~~-g--~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 472 (590)
. -...+. ..+++..|...|-+..+. . ..|. ...|..+ .+.. .++..+...++. .....+ ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl-~~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIM-LGQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHH-TTCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHH-cCCHHHHHHHhcccccccc-CCccHH
Confidence 1 122344 567777776666554321 0 0111 1122222 1122 222233333322 211221 234444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522 473 HFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA 550 (590)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 550 (590)
.+..++.+| ..+++.+...+++.. .+..|+.....+-..+. . --...+.++ ..|-.......++..+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~--~---Ir~~~L~~i--~~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD--T---MLEQNLCRI--IEPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH--H---HHHHHHHHH--HTTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--H---HHHHHHHHH--hHhhceeeHHHHHHHHCc-
Confidence 444444443 455666666666655 23334432111110000 0 011112222 246667777788777654
Q ss_pred CChHHHHHHHHHhhhcCC
Q 038522 551 GAWDNARKTRKLMEERSL 568 (590)
Q Consensus 551 g~~~~A~~~~~~~~~~~~ 568 (590)
..+++...+-+|...|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 67899999999987653
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=77.32 E-value=19 Score=28.67 Aligned_cols=29 Identities=3% Similarity=-0.041 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522 505 LWSAILGACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
.|......+-..|++.+|.++|+..++..
T Consensus 98 fY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 98 FYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444555566666666666655443
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.67 E-value=33 Score=29.92 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHH
Q 038522 251 ISQIHDLIIKLGLESSNKL--TGSLIDVYAKYGSIRSAYQLYR 291 (590)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~ 291 (590)
...+.+.+.+.|..++... -.+.+...++.|+.+-+..+++
T Consensus 198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 3444444444444333211 1122334455666666666665
No 276
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.43 E-value=32 Score=28.58 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=62.4
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038522 63 SNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACA 142 (590)
Q Consensus 63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 142 (590)
++...-...+..+.+.|+.+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 445555555555555555444444444444555544444555555555432 2333333332 245455555555555
Q ss_pred ccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 038522 143 RMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGF 212 (590)
Q Consensus 143 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 212 (590)
+.++.+....+.+ +.+ .++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.+.
T Consensus 107 ~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 107 QIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HhCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 5554333322222 221 23444444444455544443333333333333444444444444444443
No 277
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=75.33 E-value=43 Score=29.55 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=76.6
Q ss_pred ccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 038522 9 KTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF 88 (590)
Q Consensus 9 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 88 (590)
+..+..+..+++..-.-...|....+.+. ..+..|+.+-+ +.+++.|..++...-...+...+..|+.+-+.-++
T Consensus 8 ~~~~~~~v~~lL~~~~~~~~d~~g~t~L~-~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 8 NTWKSKQLKSFLSSKDTFKADVHGHSASY-YAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp GGCCHHHHHHHHHSTTTTCCCTTSCCHHH-HHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH
T ss_pred HhcCHHHHHHHHHhCCCCccCCCCCCHHH-HHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45566666666665422233333333333 33345666544 44445555444332234455566777777777776
Q ss_pred ccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH---HHHHHHHhccCchhhHHHHHHHHHhcCC
Q 038522 89 DRMPER---NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTY---SSALRACARMRWLQGGRMIQGSIQKGRF 162 (590)
Q Consensus 89 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 162 (590)
+.-..+ +..-++.|.. .+..|+.+ +++.+.+.|..++.... .+.+...+..|+.+-+ +.+.+.|.
T Consensus 83 ~~ga~~~~~d~~g~t~L~~-A~~~g~~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~ 153 (285)
T 3kea_A 83 FSGLDDSQFDDKGNTALYY-AVDSGNMQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIP 153 (285)
T ss_dssp HTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSC
T ss_pred HCCCCCCCcCCCCCcHHHH-HHHcCCHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCC
Confidence 654332 2223333333 34555544 33334444544432221 2334444445554433 33334443
Q ss_pred CC-chHHHHHHHHHHHhcCChHHHHHHHhc
Q 038522 163 VE-NLFVKSALLDLYAKCGWIEDAWILFER 191 (590)
Q Consensus 163 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 191 (590)
.+ +...-...+...+..|+.+-+.-+++.
T Consensus 154 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 154 STFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp TTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 22 110122233344455666555555543
No 278
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=75.15 E-value=30 Score=31.87 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCcHHHHHH
Q 038522 372 GNALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGY--GHEAIELYKKMKHEGMVPNDVTFLS 440 (590)
Q Consensus 372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ 440 (590)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+.......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 36778888899999999999999987642 234444555554332 3457778888887776555444333
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.93 E-value=42 Score=29.24 Aligned_cols=53 Identities=8% Similarity=0.012 Sum_probs=25.6
Q ss_pred HHHHhhcccchhHHHHHHHHHHHhcCCCchh---HHHHHHHHHHhcCChHHHHHHhccCC
Q 038522 36 LLQFCIDKKAERQAHLIHAHIITNGYESNLH---LSTKVIIFYAKVGDVLSARKAFDRMP 92 (590)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~ 92 (590)
.+...++.|+.+.+ +.+++.|..++.. .-...+...+..|+.+-+.-+++.-.
T Consensus 8 ~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 63 (285)
T 1wdy_A 8 LLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63 (285)
T ss_dssp HHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence 34444555665433 3344445433321 11233444556677666666665533
No 280
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=74.35 E-value=35 Score=28.04 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=23.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHH
Q 038522 265 SSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326 (590)
Q Consensus 265 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 326 (590)
++..+-...+.++.+.++.+....+...+..++...-...+.++...+. .++...+..+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG--ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--hhHHHHHHHHH
Confidence 3444444444444444443322222222333333333334444444433 33444444443
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.21 E-value=18 Score=33.31 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCC---ccchHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038522 271 GSLIDVYAKYGSIRSAYQLYRSMLKTD---IISCTALISGFARDDN-HSKEAFDLFKDMILKKMGIDDVILCLMLNIC 344 (590)
Q Consensus 271 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 344 (590)
..++.-|...|+.++|.+.++++..|. ..+...+..++-+.++ ..+....++..+...|+-+.......+...+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 347777889999999999999997663 2234444455554332 1356778888888887666554444444333
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.81 E-value=78 Score=31.82 Aligned_cols=305 Identities=10% Similarity=-0.019 Sum_probs=158.3
Q ss_pred ccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhccc--chhHHHHHHHHHHHhc-CCCchhHHHHHHHHHHhcCChHH
Q 038522 7 NFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKK--AERQAHLIHAHIITNG-YESNLHLSTKVIIFYAKVGDVLS 83 (590)
Q Consensus 7 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~ 83 (590)
..+.|++..+..+...+.+.+. ..|..--..-...+ ...++..+++ +.. .+.....-+.-+..+.+.+++..
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL--~~yl~y~~l~~~l~~~~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l~~~~~w~~ 90 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPL--YPYLEYRQITDDLMNQPAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDWRG 90 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTT--HHHHHHHHHHHTGGGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCc--HHHHHHHHHHhCcccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhCCCHHH
Confidence 3567888888887777644333 22322222222222 3444444433 322 22233445566777888999999
Q ss_pred HHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhH--HHHHHHHHhcC
Q 038522 84 ARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGG--RMIQGSIQKGR 161 (590)
Q Consensus 84 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~~~~~~~~~ 161 (590)
....+.. ...+...-.....+....|+..+|......+-..| ......+..++..+.+.|.+... ..=+..+...|
T Consensus 91 ~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~ 168 (618)
T 1qsa_A 91 LLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (618)
T ss_dssp HHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 9998877 32233333345667777888777777666665444 23344556666666554433321 11111112111
Q ss_pred -----------CCCchH-HHHHHHHHHHhcCChHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 038522 162 -----------FVENLF-VKSALLDLYAKCGWIEDAWILFERIERKDVV---SWNAMIGGLAMQGFNDDSFWLFRSMMRQ 226 (590)
Q Consensus 162 -----------~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (590)
++++.. ....++..+. +...+....... .++.. .+...+.-+.+ .+.+.|...+......
T Consensus 169 ~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~ 243 (618)
T 1qsa_A 169 NTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQA 243 (618)
T ss_dssp CHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhc
Confidence 112211 1122222221 122222222221 11111 11112233333 3778999999888654
Q ss_pred CCCCChhhHH----HHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc---c
Q 038522 227 GMKPDCFTLG----SILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI---I 299 (590)
Q Consensus 227 ~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~ 299 (590)
. ..+..... .+.......+...++...+...... ..+.....-.+....+.|+++.|...|+.|..... .
T Consensus 244 ~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r 320 (618)
T 1qsa_A 244 Q-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 320 (618)
T ss_dssp T-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred c-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHh
Confidence 3 22333222 2333344455355566666654433 23444444555666678999999999999965321 1
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038522 300 SCTALISGFARDDNHSKEAFDLFKDMIL 327 (590)
Q Consensus 300 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 327 (590)
..--+..++...|+ .++|..+|..+..
T Consensus 321 ~~YW~~ra~~~~g~-~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 321 WRYWQADLLLERGR-EAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHhc
Confidence 22334556677888 9999999999864
No 283
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.34 E-value=21 Score=29.53 Aligned_cols=59 Identities=8% Similarity=0.082 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHH
Q 038522 46 ERQAHLIHAHIITNGYES-NLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMIS 104 (590)
Q Consensus 46 ~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 104 (590)
...+..+|..|...|+-. -...|......+-..|++.+|..+|+.-.+.+......|.+
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~ 154 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLR 154 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 446666777776666533 23445555566666666666666666554444444444333
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=71.03 E-value=57 Score=33.01 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHhcCChHHHHHHHhccC
Q 038522 174 DLYAKCGWIEDAWILFERIE 193 (590)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~~~ 193 (590)
.-+...|++++|..+|.-..
T Consensus 451 ~~ae~~G~~~dAi~LY~La~ 470 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAE 470 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHhc
Confidence 34556788887777765543
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.35 E-value=53 Score=31.24 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522 371 VGNALIDMYAKSGEIADANRAFDEMGD------KNVISWTSLIAGYAKHGYGHEAIELYKKMK 427 (590)
Q Consensus 371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 427 (590)
+...+.+.|.+.|+++.|.+.|.++.. .-...+-.+++.+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334555666666666666666665542 112244445555555566666655555543
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.09 E-value=18 Score=35.15 Aligned_cols=67 Identities=16% Similarity=0.148 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCC----Hh--HH-HHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQMNIKPT----AS--LW-SAILGACSIYGNTSLGELAARNLFDMEPEKS 537 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~--~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 537 (590)
...++.+++.|...+.++.|..+..+..++.. .. .| --+.+.+...+++.+|.+.+..++..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 34566666667777777777777776633221 11 11 1223444556666666666666666666443
No 287
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=65.96 E-value=68 Score=28.02 Aligned_cols=12 Identities=8% Similarity=-0.188 Sum_probs=5.0
Q ss_pred HHHHHHHHhcCC
Q 038522 373 NALIDMYAKSGE 384 (590)
Q Consensus 373 ~~l~~~~~~~~~ 384 (590)
...+.++.+.|+
T Consensus 210 ~~A~~aL~~~~~ 221 (280)
T 1oyz_A 210 IEAIIGLSYRKD 221 (280)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 334444444443
No 288
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=64.41 E-value=45 Score=25.40 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHH
Q 038522 317 EAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALID 377 (590)
Q Consensus 317 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 377 (590)
+..+-++.+....+.|++..+...+.+|.+.+|+..|.++++-++..--. ...+|..++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~-~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC-chhhHHHHHH
Confidence 45555555655667888888888888888888888888888777653322 2445555543
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=63.29 E-value=34 Score=26.80 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=37.4
Q ss_pred HHHHHHhccCCCCC-----ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 038522 82 LSARKAFDRMPERN-----VVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF 132 (590)
Q Consensus 82 ~~a~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 132 (590)
+++..+|..|.... ..-|......+-..|++.+|.++|+.-++.+.+|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34677777766533 3347777788888899999999999988888777543
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.26 E-value=28 Score=29.29 Aligned_cols=31 Identities=6% Similarity=-0.048 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522 503 ASLWSAILGACSIYGNTSLGELAARNLFDME 533 (590)
Q Consensus 503 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 533 (590)
...|......+-..|++.+|..+|+..++..
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3445555556666677777777777776443
No 291
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.64 E-value=38 Score=30.42 Aligned_cols=65 Identities=18% Similarity=0.326 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCcHHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGY--GHEAIELYKKMKHEGMVPNDVT 437 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~ 437 (590)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 5677888889999999999999987632 233344444444322 3456677888877666554443
No 292
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=62.28 E-value=89 Score=28.06 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CC
Q 038522 410 YAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR---GQ 486 (590)
Q Consensus 410 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 486 (590)
+...|++++|+..|+... +...+.......+.+++.+++....+= ....-++.-.+. .+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrEY--------ilal~iEl~Rr~l~~~~ 185 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETAREY--------ILGLSIELERRSLKEGN 185 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHTCCTTC
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCccc
Q ss_pred hHHHHHHHHhc---CCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522 487 LESAYNMIRQM---NIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRK 561 (590)
Q Consensus 487 ~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 561 (590)
..+.+++---+ ++.| -..++..-+..+.+.+++..|-.+.++++++.|. ....++|++++.
T Consensus 186 ~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~--------------~~~a~qArkil~ 251 (325)
T 3mv2_A 186 TVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS--------------GPRAEQARKIKN 251 (325)
T ss_dssp HHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS--------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--------------HHHHHHHHHHHH
Q ss_pred HhhhcC
Q 038522 562 LMEERS 567 (590)
Q Consensus 562 ~~~~~~ 567 (590)
...+.+
T Consensus 252 ~ce~~~ 257 (325)
T 3mv2_A 252 KADSMA 257 (325)
T ss_dssp HHHTSC
T ss_pred HHhcCC
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=60.55 E-value=20 Score=32.26 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCc---cchHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCCHHHH
Q 038522 272 SLIDVYAKYGSIRSAYQLYRSMLKTDI---ISCTALISGFARDDN-HSKEAFDLFKDMILKKMGIDDVIL 337 (590)
Q Consensus 272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~ 337 (590)
.++.-|...|+.++|.+.++++..|.- .+...+..++-+.++ ..+....++..+...|+-+.....
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 467778888999999999999976521 233344444544322 134567888888877765554443
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=60.27 E-value=32 Score=30.38 Aligned_cols=17 Identities=6% Similarity=0.020 Sum_probs=9.0
Q ss_pred HHHhcCChHHHHHHhcc
Q 038522 74 FYAKVGDVLSARKAFDR 90 (590)
Q Consensus 74 ~~~~~g~~~~a~~~~~~ 90 (590)
..+..|+.+-+..+++.
T Consensus 37 ~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 34445666555555554
No 295
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=58.41 E-value=10 Score=23.98 Aligned_cols=48 Identities=21% Similarity=0.133 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522 524 LAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP 572 (590)
Q Consensus 524 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 572 (590)
+..+.+.++.| +......-..+-...|+.+.|+..|-.|...+..|+.
T Consensus 11 e~l~~L~emFP-~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFP-NMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCS-SSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 34444445566 3333333333345567788888887777766665543
No 296
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.15 E-value=63 Score=26.26 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=24.7
Q ss_pred HHhcCChHHHHHHhccCC-C---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038522 75 YAKVGDVLSARKAFDRMP-E---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRAN 130 (590)
Q Consensus 75 ~~~~g~~~~a~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 130 (590)
.+..|+.+....++..-. . .+..-++.|..+ ++.|+. ++++.+.+.|..++
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCC
Confidence 445677777777766543 2 222233333333 344443 34444555554443
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.36 E-value=51 Score=28.20 Aligned_cols=86 Identities=9% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHHHHhcCChHHHHHHHHhc-----CCCC----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 478 VDLFARRGQLESAYNMIRQM-----NIKP----TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~~-----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
++.+....++++|.+++++. +.++ ........+..-.....-..+..+.+.+.. ...+......+..+.
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~--~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS--SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Confidence 44555666666666666554 2221 112222223333333333444455555533 335666667777888
Q ss_pred hcCChHHHHHHHHHhhh
Q 038522 549 AAGAWDNARKTRKLMEE 565 (590)
Q Consensus 549 ~~g~~~~A~~~~~~~~~ 565 (590)
+.|+-++|.++|-+.+.
T Consensus 103 rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHH
Confidence 88999998888877655
No 298
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=56.30 E-value=68 Score=27.41 Aligned_cols=23 Identities=13% Similarity=-0.164 Sum_probs=15.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 038522 102 MISGYAQNGYDENALLVFSAMLR 124 (590)
Q Consensus 102 li~~~~~~~~~~~a~~~~~~m~~ 124 (590)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677777777777777776653
No 299
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=56.22 E-value=48 Score=28.56 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=30.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHhh-------HHHHHHHHh--ccCchhhHHHHHHHHH
Q 038522 104 SGYAQNGYDENALLVFSAMLRSGVRANQFT-------YSSALRACA--RMRWLQGGRMIQGSIQ 158 (590)
Q Consensus 104 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~ 158 (590)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 344566777777777777766665555332 233333321 5566666666665543
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=52.96 E-value=44 Score=25.28 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCCc---cchHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCCHHH
Q 038522 271 GSLIDVYAKYGSIRSAYQLYRSMLKTDI---ISCTALISGFARDDN-HSKEAFDLFKDMILKKMGIDDVI 336 (590)
Q Consensus 271 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~ 336 (590)
..++.-|...|+.++|.+.++++..|.- .+...+..++-+.+. ..+.+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4467778888899999998888865521 233344445554432 13567788888877775555443
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.51 E-value=1e+02 Score=25.80 Aligned_cols=53 Identities=8% Similarity=-0.060 Sum_probs=27.5
Q ss_pred HhhcccchhHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCChHHHHHHhccC
Q 038522 39 FCIDKKAERQAHLIHAHIITNGYESNLHL--STKVIIFYAKVGDVLSARKAFDRM 91 (590)
Q Consensus 39 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~ 91 (590)
..+..|+.+.+..+++.+.+.|..++... -...+...+..|+.+-+..+++.-
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 69 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 34455677766666666655554433221 112334445566666665555543
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.47 E-value=1e+02 Score=33.05 Aligned_cols=51 Identities=6% Similarity=-0.111 Sum_probs=30.4
Q ss_pred HHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 441 LLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
++..|...|.++-+.++..- .+.++..--.+..+|...|++++|.+.|+++
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556666666655443311 2223333234566778888888888888877
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.44 E-value=77 Score=25.18 Aligned_cols=49 Identities=6% Similarity=0.038 Sum_probs=31.8
Q ss_pred HHHHhccCCC-----CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 038522 84 ARKAFDRMPE-----RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF 132 (590)
Q Consensus 84 a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 132 (590)
+..+|..|.. .-..-|......+-..|++.+|.++|..-++.+.+|...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4455555443 223346666667777788888888888887777777544
No 304
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=50.05 E-value=1.1e+02 Score=25.61 Aligned_cols=82 Identities=11% Similarity=-0.046 Sum_probs=42.6
Q ss_pred HHHHhcCChHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhh--HHHHHHHhccCCCh
Q 038522 174 DLYAKCGWIEDAWILFERIERKDV---VSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFT--LGSILRASVGGIEL 248 (590)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~ 248 (590)
...+..|+.+-+..+++.-..++. .-. +.+...+..|+.+ +++.+.+.|..++... -.+.+......|+.
T Consensus 149 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 149 HWAAFSGCVDIAEILLAAKCDLHAVNIHGD-SPLHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp HHHHHHCCHHHHHHHHTTTCCTTCCCTTCC-CHHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 334455666665555554332221 112 2233444556554 3344445565554321 12345566778888
Q ss_pred hHHHHHHHHHHH
Q 038522 249 MKISQIHDLIIK 260 (590)
Q Consensus 249 ~~a~~~~~~~~~ 260 (590)
..+.++.+.+.+
T Consensus 224 ~~~~~l~~~l~d 235 (237)
T 3b7b_A 224 WSALQMSKALQD 235 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 888888877765
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.36 E-value=76 Score=24.83 Aligned_cols=64 Identities=17% Similarity=0.326 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCcHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGY--GHEAIELYKKMKHEGMVPNDV 436 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 436 (590)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5678888888999999999999876522 233444445554322 345677777777766555433
No 306
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.04 E-value=69 Score=31.15 Aligned_cols=120 Identities=11% Similarity=0.029 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh--hH-HHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHH
Q 038522 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA--EH-FSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAI 509 (590)
Q Consensus 435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 509 (590)
...++.+++.|...+.++.|..+..+..--....++. .. +-.+.+.+.-.+++.+|.+.+..+ ..+++.......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 4668889999999999999999999875100001121 12 223466778889999999998887 333333221111
Q ss_pred HHHHHhcCCchHHHHHHHHHhcCCCCC-----------cchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 510 LGACSIYGNTSLGELAARNLFDMEPEK-----------SVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
..++ +-.-..+-+.+.-|.. -..|..|+.++ +.|+.++-...++.
T Consensus 311 ~~a~-------K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 311 QQSN-------KLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHH-------HHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHH-------HHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 1111 0112223334555521 12377777775 77998887766654
No 307
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.78 E-value=89 Score=25.99 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=10.4
Q ss_pred HHHhcCChHHHHHHHHhc
Q 038522 480 LFARRGQLESAYNMIRQM 497 (590)
Q Consensus 480 ~~~~~g~~~~A~~~~~~~ 497 (590)
.|.+.|.+++|.+++++.
T Consensus 123 VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 455556666666666555
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.45 E-value=89 Score=23.58 Aligned_cols=64 Identities=17% Similarity=0.326 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCcHH
Q 038522 373 NALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGY--GHEAIELYKKMKHEGMVPNDV 436 (590)
Q Consensus 373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 436 (590)
..++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 5677888888999999999999876632 233444445554432 355677777777766555433
No 309
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.61 E-value=1.5e+02 Score=26.96 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=17.7
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHH
Q 038522 99 WTAMISGYAQNGYDENALLVFSAML 123 (590)
Q Consensus 99 ~~~li~~~~~~~~~~~a~~~~~~m~ 123 (590)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 3556777777777777777777764
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.65 E-value=1e+02 Score=25.72 Aligned_cols=20 Identities=5% Similarity=-0.057 Sum_probs=9.6
Q ss_pred HHHHHhcCChHHHHHHhccC
Q 038522 72 IIFYAKVGDVLSARKAFDRM 91 (590)
Q Consensus 72 i~~~~~~g~~~~a~~~~~~~ 91 (590)
+...+..|+.+-+.-+++.-
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 33444555555555554443
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.44 E-value=64 Score=25.26 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccCCC---ccchHHHHHHHHhcCC-ChHHHHHHHHHHHHcCCCCCHHH
Q 038522 271 GSLIDVYAKYGSIRSAYQLYRSMLKTD---IISCTALISGFARDDN-HSKEAFDLFKDMILKKMGIDDVI 336 (590)
Q Consensus 271 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~ 336 (590)
..++.-|...|+.++|...++++..|. ..+...+..++-+.++ ..+.+..++..+...|+-+....
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 446777888888889988888886552 1233344445544322 13457778888877775554433
No 312
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.80 E-value=87 Score=25.36 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=41.2
Q ss_pred ccccccCChHHHHHHhhhCC--CCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCC
Q 038522 5 RANFKTGQLKQALKFSLSCP--DTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHL--STKVIIFYAKVGD 80 (590)
Q Consensus 5 ~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~ 80 (590)
...+..|+.+....+++.-. -...+....+.+. ..+..|+.+ +++.+++.|..++... -...+...+..|+
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 33456778887777776541 1222333333333 333445543 4455555665544221 1123344456677
Q ss_pred hHHHHHHhcc
Q 038522 81 VLSARKAFDR 90 (590)
Q Consensus 81 ~~~a~~~~~~ 90 (590)
.+-+..+++.
T Consensus 85 ~~~~~~Ll~~ 94 (201)
T 3hra_A 85 TEILAYMLKH 94 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777744
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=44.54 E-value=69 Score=26.20 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=11.9
Q ss_pred HHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522 512 ACSIYGNTSLGELAARNLFDMEPEKSVN 539 (590)
Q Consensus 512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 539 (590)
.|.+.|.+++|.+++++..+..|.+...
T Consensus 126 VCiekg~Fk~A~eiLkr~f~~~~~~~~l 153 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIFGDPNSHMPF 153 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC-----CCTT
T ss_pred HHHHccchHHHHHHHHHHhcCCCCchHH
Confidence 4555555555555555555444433333
No 314
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=42.39 E-value=67 Score=26.95 Aligned_cols=115 Identities=10% Similarity=0.066 Sum_probs=56.3
Q ss_pred ccccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhH---HHHHHHHHHhcCC
Q 038522 5 RANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHL---STKVIIFYAKVGD 80 (590)
Q Consensus 5 ~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~ 80 (590)
..-++.|+.+-...+++.- .-..++.... ..+...+..|+.+ +++.+.+.|..++... -...+...+..|+
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 3446678887777777653 2122232222 2344455666664 4445555554333211 2234445566777
Q ss_pred hHHHHHHhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038522 81 VLSARKAFDRMPER---NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRA 129 (590)
Q Consensus 81 ~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 129 (590)
.+-+..+++.-..+ +...++.+ ...+..|+.+ +++.+.+.|..+
T Consensus 89 ~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~----~~~~Ll~~~~~~ 135 (240)
T 3eu9_A 89 LSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTS----IVAYLIAKGQDV 135 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHH----HHHHHHhcCCCc
Confidence 77776666653332 22223333 3334445543 444445555443
No 315
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=42.29 E-value=1e+02 Score=23.72 Aligned_cols=62 Identities=11% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 120 SAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 120 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 4566778877765543 4555555667778889999988877666666666666777766654
No 316
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.96 E-value=1.1e+02 Score=23.74 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=45.5
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccC-chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 038522 119 FSAMLRSGVRANQFTYSSALRACARMR-WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIE 183 (590)
Q Consensus 119 ~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 183 (590)
.+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 5 ~~~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34567788887766554 556666666 67889999999988877777776666667777777543
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.91 E-value=77 Score=26.69 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=20.9
Q ss_pred chHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038522 98 SWTAMISGYAQNGYDENALLVFSAMLRSGVRAN 130 (590)
Q Consensus 98 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 130 (590)
-|......+-..|++.+|..+|+.-++.+.+|-
T Consensus 152 fYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 152 FYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 355555666666677777777766666665553
No 318
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.56 E-value=82 Score=21.18 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=41.9
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccC-chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 120 SAMLRSGVRANQFTYSSALRACARMR-WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 120 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
+.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 44667787776655 44566666654 5677888888888776666666666667777666643
No 319
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=40.55 E-value=1.1e+02 Score=28.05 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhH--HHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHH
Q 038522 28 LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHL--STKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISG 105 (590)
Q Consensus 28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~ 105 (590)
.|....+.|.. .+..|+.+.+.. +++.|..++... -...+...+..|+.+-+.-+++.-...+...-.+.+..
T Consensus 16 ~d~~g~t~L~~-Aa~~g~~~~v~~----Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 16 SDDENMEKIHV-AARKGQTDEVRR----LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHL 90 (364)
T ss_dssp CCHHHHHHHHH-HHHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHH
T ss_pred cCCCCCCHHHH-HHHcCCHHHHHH----HHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHH
Confidence 34443444433 334556544433 344454443221 11233444556777666666665444333222223333
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC
Q 038522 106 YAQNGYDENALLVFSAMLRSGVR 128 (590)
Q Consensus 106 ~~~~~~~~~a~~~~~~m~~~~~~ 128 (590)
.+..|+.+-+..+++.....|..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCC
Confidence 44556665555555554433433
No 320
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=39.52 E-value=1.1e+02 Score=23.30 Aligned_cols=62 Identities=10% Similarity=0.103 Sum_probs=42.2
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccC-chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 120 SAMLRSGVRANQFTYSSALRACARMR-WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 120 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
+.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 7 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 7 SELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3466778877766554 455666555 6788999999998887666766665566667666654
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=39.28 E-value=1.2e+02 Score=23.48 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=42.2
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 119 FSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 119 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
.+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3456677877665544 35566666667888999999998887666776666666777777654
No 322
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.03 E-value=67 Score=31.21 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=36.2
Q ss_pred HHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522 477 VVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT 548 (590)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 548 (590)
|.+...-...+..|..+|.++ .+.| +...|+.|...+...|+.-.|.-.|-+.+-...+.+.+..+|...+.
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 334444444555666666655 2233 33455555555555555555555555555333225555555554443
No 323
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=38.91 E-value=2.1e+02 Score=25.65 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=18.4
Q ss_pred HHHHHHHHhcCCCchhH--HHHHHHHHHhcCChHHHHHHhcc
Q 038522 51 LIHAHIITNGYESNLHL--STKVIIFYAKVGDVLSARKAFDR 90 (590)
Q Consensus 51 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 90 (590)
.+.+.+++.|..++... -...+...+..|..+.+..+++.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 34444555554443221 11223344556666666655543
No 324
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=37.16 E-value=3.4e+02 Score=27.43 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=13.4
Q ss_pred HHHHhcCChHHHHHHHHhc
Q 038522 275 DVYAKYGSIRSAYQLYRSM 293 (590)
Q Consensus 275 ~~~~~~g~~~~a~~~~~~~ 293 (590)
.-+...|++++|..+|.-.
T Consensus 451 ~~ae~~G~~~dAi~LY~La 469 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLA 469 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHh
Confidence 3456778888888877664
No 325
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.10 E-value=1.5e+02 Score=24.61 Aligned_cols=53 Identities=13% Similarity=-0.047 Sum_probs=24.1
Q ss_pred HHHHhcCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 038522 174 DLYAKCGWIEDAWILFERIERK---DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD 231 (590)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 231 (590)
...+..|+.+-+..+++.-..+ |..-.+ .+...+..|+.+ +++.+.+.|..++
T Consensus 144 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 144 HRAAAKGNLKMVHILLFYKASTNIQDTEGNT-PLHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHHHcCCHHHHHHHHhcCCCccccCCCCCC-HHHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 3344556666555555432222 221122 233344556543 4444455666554
No 326
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.50 E-value=1.9e+02 Score=24.02 Aligned_cols=20 Identities=10% Similarity=0.099 Sum_probs=9.5
Q ss_pred HhcCChHHHHHHHHHHHHcC
Q 038522 107 AQNGYDENALLVFSAMLRSG 126 (590)
Q Consensus 107 ~~~~~~~~a~~~~~~m~~~~ 126 (590)
++.|+.+-+..+++.+.+.|
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 44455554444444444444
No 327
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.45 E-value=1.7e+02 Score=23.41 Aligned_cols=80 Identities=10% Similarity=0.144 Sum_probs=50.1
Q ss_pred HHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc-----------------CCCCCcc-hHHH
Q 038522 481 FARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFD-----------------MEPEKSV-NYVV 542 (590)
Q Consensus 481 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------------~~p~~~~-~~~~ 542 (590)
+.-.|.+.+++-++...+ .....-|..+ .|-+..++..|...++.+++ ++|.+.. ++..
T Consensus 43 LyyngEY~R~Lf~L~~lN-T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l 119 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLN-TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL 119 (242)
T ss_dssp HHHTTCHHHHHHHHHTCC-BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcc-hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHH
Confidence 344677777777766553 1111122222 33466777777777777772 2243333 4667
Q ss_pred HHHHHHhcCChHHHHHHHHHh
Q 038522 543 LSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 543 l~~~~~~~g~~~~A~~~~~~~ 563 (590)
++..+...|+.+||++.+..-
T Consensus 120 ~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 120 LGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHhhhHhhhh
Confidence 889999999999999988653
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.28 E-value=1.2e+02 Score=23.35 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=29.7
Q ss_pred HHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 425 KMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 425 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
.+.+.|+++++.-. .++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCC
Confidence 34455555554432 2233333344455666666666554 333444454445555555553
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.75 E-value=1.1e+02 Score=23.60 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522 120 SAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 120 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
+.+.+.|++++..-.. ++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~~-Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQL-VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHHH-HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHHH-HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4456677777765433 455555555 678889999998887666766655556667666643
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.32 E-value=1.3e+02 Score=28.74 Aligned_cols=137 Identities=8% Similarity=-0.048 Sum_probs=66.6
Q ss_pred CChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhcc
Q 038522 11 GQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDR 90 (590)
Q Consensus 11 g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 90 (590)
.+++-|+++..+. +.+--...|..-...+...|++++|.++-.... .|+-.++.|.+.+-.+=...|+..-.+..|..
T Consensus 343 ~n~~lA~~lA~R~-~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP-~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~ 420 (494)
T 1bpo_A 343 QNPDLALRMAVRN-NLAGAEELFARKFNALFAQGNYSEAAKVAANAP-KGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI 420 (494)
T ss_dssp CCHHHHHHHHHHT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSG-GGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHhc-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCc-cccccCHHHHHHHhcCCCCCCCCCHHHHHHHH
Confidence 5666777777665 222333446666677777788877776655432 23444555554444433334444444444444
Q ss_pred CCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHH
Q 038522 91 MPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSI 157 (590)
Q Consensus 91 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 157 (590)
+.+ .|..-=-.+++....+|+.+-..+.+. +..+..+...=. + .+..+...|..+|.+.
T Consensus 421 Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~---e~KL~~SEeLGD-l----vk~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 421 LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLK---EDKLECSEELGD-L----VKSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHH---HTCSCCCHHHHH-H----HHHHCSHHHHHHHHHH
T ss_pred HhccCccchHHhhHHhHHHHhccHHHHHHHHHh---cCCccccHHhHh-h----hhhcCHHHHHHHHHHc
Confidence 432 121111224455555555444433332 223333333222 1 2334556666666443
No 331
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=33.69 E-value=3e+02 Score=25.73 Aligned_cols=340 Identities=11% Similarity=0.037 Sum_probs=0.0
Q ss_pred CcccccccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 038522 1 MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGD 80 (590)
Q Consensus 1 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 80 (590)
.+.+..-+..|+.+-...+++.-.............+...+..|+.+-+..+++. ...+......-...+...++.|+
T Consensus 15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHHHHHHTC
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHHHHHCCC
Q ss_pred hHHHHHHhccCCCCCccchH--HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522 81 VLSARKAFDRMPERNVVSWT--AMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ 158 (590)
Q Consensus 81 ~~~a~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 158 (590)
.+-+.-+++.-..++..... +.+...++.|+.+-+..+++. ..........-.+.+...+..|+.+-+..+++.
T Consensus 93 ~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-- 168 (437)
T 1n11_A 93 TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVRVAELLLER-- 168 (437)
T ss_dssp HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--
T ss_pred HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC--
Q ss_pred hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchH--HHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHH
Q 038522 159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSW--NAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG 236 (590)
Q Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 236 (590)
...+......-...+...+..|+.+-+..+++.-..++...+ .+.+...+..|+ .++++.+.+.|..++.....
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~ 244 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ----VEVARSLLQYGGSANAESVQ 244 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCCCCCCCCCC
Q ss_pred --HHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---cCCCccchHHHHHHHHhc
Q 038522 237 --SILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM---LKTDIISCTALISGFARD 311 (590)
Q Consensus 237 --~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~ 311 (590)
..+...+..|+.+-+..+++. ...+......-.+.+...+..|+.+-+.-+++.- ...+..-.+.|..+....
T Consensus 245 g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g 322 (437)
T 1n11_A 245 GVTPLHLAAQEGHAEMVALLLSK--QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 322 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSS
T ss_pred CCCHHHHHHHCCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcC
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHhchhhhHhHHHHHH
Q 038522 312 DNHSKEAFDLFKDMILKKMGIDDVIL--CLMLNICANVASLNLGRQIHA 358 (590)
Q Consensus 312 ~~~~~~a~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~ 358 (590)
.. ++.+.+.+.|..++.... .+.+...+..|..+-+..+++
T Consensus 323 ~~------~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 323 NI------KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CS------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cH------HHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
No 332
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.46 E-value=3e+02 Score=25.32 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhccCCCc----cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHH
Q 038522 272 SLIDVYAKYGSIRSAYQLYRSMLKTDI----ISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVI 336 (590)
Q Consensus 272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 336 (590)
.++.-|...|+.++|...++++..|+. ..+..+..++-+.....+.+..++..+...++-+....
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~ 85 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNF 85 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456667777777777777777755531 22333333333322212345555666665554444333
No 333
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=32.06 E-value=3e+02 Score=25.28 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCc---cchHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCHh
Q 038522 68 STKVIIFYAKVGDVLSARKAFDRMPERNV---VSWTAMISGYAQNGYD--ENALLVFSAMLRSGVRANQF 132 (590)
Q Consensus 68 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~ 132 (590)
...++.-|...|+.++|...++++..|+. .....+|......++. +.+..++..+...|+-+...
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~ 84 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDN 84 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 44566677777777777777777776641 1122223322333222 34555666666655443333
No 334
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=31.67 E-value=1.7e+02 Score=24.82 Aligned_cols=89 Identities=10% Similarity=-0.031 Sum_probs=43.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCChhh-------HHHHHHHhc--cCCChhHHHHHHHHHHHhCC---------C-
Q 038522 204 IGGLAMQGFNDDSFWLFRSMMRQGMKPDCFT-------LGSILRASV--GGIELMKISQIHDLIIKLGL---------E- 264 (590)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~- 264 (590)
+...++.|+.+....+++.+.+.|..++... .+.+..+.. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3344566777776666666666655554322 233333332 55666666666655433110 0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 265 SSNKLTGSLIDVYAKYGSIRSAYQLYRSM 293 (590)
Q Consensus 265 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 293 (590)
.+..-.+ .+...+..|+.+-+.-+++.-
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHHHhCC
Confidence 0001112 233345567777666666654
No 335
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=31.30 E-value=2.3e+02 Score=23.54 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=37.3
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCChhh--HHHHHHHhccCCChhHHHHHHHHHHHhCCCCChh--HHHHHHHHHHhcCC
Q 038522 207 LAMQGFNDDSFWLFRSMMRQGMKPDCFT--LGSILRASVGGIELMKISQIHDLIIKLGLESSNK--LTGSLIDVYAKYGS 282 (590)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 282 (590)
.+..|+.+ +++.+.+.|..++... -.+.+...++.|+.+-+ +.+.+.|..++.. .-.+-+......|+
T Consensus 151 A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 151 AAFSGCVD----IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHHHCCHH----HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHHCCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence 34445543 4444555565554321 11233444455665543 4444555544322 11123344456666
Q ss_pred hHHHHHHHHhc
Q 038522 283 IRSAYQLYRSM 293 (590)
Q Consensus 283 ~~~a~~~~~~~ 293 (590)
...+.++.+.+
T Consensus 223 ~~~~~~l~~~l 233 (237)
T 3b7b_A 223 VWSALQMSKAL 233 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 76666666554
No 336
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.16 E-value=2.2e+02 Score=23.47 Aligned_cols=148 Identities=9% Similarity=-0.087 Sum_probs=68.4
Q ss_pred cccccccCChHHHHHHhhhC--CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCC--------chhHHHHHHH
Q 038522 4 VRANFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYES--------NLHLSTKVII 73 (590)
Q Consensus 4 ~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~li~ 73 (590)
+..-++.|+.+-...+++.- .-...+....+.+ ...+..|+.+-+..+ ++.|..+ +..-. ..+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~~L----l~~~~~~~~~~~~~~~~~g~-t~L~ 80 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL-HIAALYDNLEAAMVL----MEAAPELVFEPMTSELYEGQ-TALH 80 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHH-HHHHHTTCHHHHHHH----HHHCGGGGGCCCCSTTTTTC-CHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHH-HHHHHcCCHHHHHHH----HHcCchhccccccccCCCCc-CHHH
Confidence 34445677777777777652 2222233333333 333345665544443 3444222 11122 2334
Q ss_pred HHHhcCChHHHHHHhccCCCCCc----------------cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhh--HH
Q 038522 74 FYAKVGDVLSARKAFDRMPERNV----------------VSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFT--YS 135 (590)
Q Consensus 74 ~~~~~g~~~~a~~~~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~ 135 (590)
..+..|+.+-+.-+++.-..++. .-.+.| ...+..|+. ++++.+.+.|..++... -.
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~v~~Ll~~ga~~~~~d~~g~ 155 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSE----EIVRLLIEHGADIRAQDSLGN 155 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCH----HHHHHHHHCCCCCCCCCCCCC
Confidence 44566777777666665443222 122233 333344443 34444445554443221 11
Q ss_pred HHHHHHhccCchhhHHHHHHHHHhcCC
Q 038522 136 SALRACARMRWLQGGRMIQGSIQKGRF 162 (590)
Q Consensus 136 ~ll~~~~~~~~~~~a~~~~~~~~~~~~ 162 (590)
+.+...+..|+.+.+..+++.+.+.|.
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 234444555666666556666665553
No 337
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.64 E-value=1.2e+02 Score=20.34 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=29.4
Q ss_pred HHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHH
Q 038522 18 KFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHII 57 (590)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 57 (590)
.++.++++.+|++.+|+.+.....+..-..++..+.+++.
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4678888999999999999887766554555555555543
No 338
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=29.62 E-value=1.2e+02 Score=21.09 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChH
Q 038522 49 AHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDE 113 (590)
Q Consensus 49 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 113 (590)
...+++.+.+.|+- +..-+..+.. .....+.|.++++.++..+..+|..++.++...+...
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 55677777777743 3333333332 3567788888888888888888888888887766533
No 339
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=29.55 E-value=1.1e+02 Score=23.44 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=6.2
Q ss_pred hcCChHHHHHHHhc
Q 038522 178 KCGWIEDAWILFER 191 (590)
Q Consensus 178 ~~~~~~~A~~~~~~ 191 (590)
..|+.+-+.-+++.
T Consensus 110 ~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 110 QEGHTAVVSFLAAE 123 (156)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HhChHHHHHHHHhc
Confidence 34444444444443
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.38 E-value=2.1e+02 Score=22.59 Aligned_cols=60 Identities=7% Similarity=0.055 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhc---CCCC--CHhHHHHHHH------HHHhcCCchHHHHHHHHHhc
Q 038522 471 AEHFSCVVDLFARRGQLESAYNMIRQM---NIKP--TASLWSAILG------ACSIYGNTSLGELAARNLFD 531 (590)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 531 (590)
...|..-+..+.. |++-+|-++++.. .-.| ....|..|++ ...+.|+...|..+++++.+
T Consensus 33 ~~~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 33 RRAVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 341
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=29.04 E-value=55 Score=20.63 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-hcc
Q 038522 112 DENALLVFSAMLRSGVRANQFTYSSALRAC-ARM 144 (590)
Q Consensus 112 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~ 144 (590)
.++|.+.|.+|++..-.++..||..+++.+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367788888887665456668888888887 543
No 342
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=28.85 E-value=1.8e+02 Score=22.58 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 426 MKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 426 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
+.+.|+++++.-. .++..+...+..-.|.++++.+.+. +...+..|....++.+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQK-DKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHH-STTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCc
Confidence 4455555544332 2333333444455666666666554 333444444444555555553
No 343
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.80 E-value=1.7e+02 Score=23.14 Aligned_cols=69 Identities=10% Similarity=0.082 Sum_probs=47.8
Q ss_pred HHHHHHHH-HHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhc--CCCCchHHHHHHHHHHHhcCCh
Q 038522 113 ENALLVFS-AMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKG--RFVENLFVKSALLDLYAKCGWI 182 (590)
Q Consensus 113 ~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 182 (590)
+.+++-+. .+.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 44444443 4456788876654 45677777777888999999999887 7666766655566777777754
No 344
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.53 E-value=1.4e+02 Score=23.57 Aligned_cols=58 Identities=10% Similarity=0.086 Sum_probs=24.2
Q ss_pred HHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhcC
Q 038522 427 KHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKY-RILPRAEHFSCVVDLFARRG 485 (590)
Q Consensus 427 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g 485 (590)
.+.|++++..- ..++..+...+..-.|.++++.+.+.. +...+..|.-.-++.+...|
T Consensus 25 ~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 34455544332 223334444444555555555554330 11223333333344444444
No 345
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=28.33 E-value=94 Score=18.86 Aligned_cols=39 Identities=8% Similarity=0.029 Sum_probs=19.3
Q ss_pred hHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHH
Q 038522 487 LESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAAR 527 (590)
Q Consensus 487 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 527 (590)
+.+|+..+..||+..+..=...++.+ +.|++..|+..++
T Consensus 10 l~~al~qMl~MGF~negGWLt~LL~~--k~gDI~~aLD~lq 48 (52)
T 1q02_A 10 LIESLSQMLSMGFSDEGGWLTRLLQT--KNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHTTTCCCTTSHHHHHHHH--TTTCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCccccHHHHHHHH--ccCCHHHHHHHhh
Confidence 34555555566655332222334332 5666666665543
No 346
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.93 E-value=2.1e+02 Score=22.12 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhhccC-ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 424 KKMKHEGMVPNDVTFLSLLFACSHTG-LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 424 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDL-GEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCCc
Confidence 346667777776554 3344555555 667788888888776 444555555555555655554
No 347
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=27.34 E-value=3e+02 Score=23.70 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=6.9
Q ss_pred cchhHHHHHHHHHHhcCC
Q 038522 367 YDAAVGNALIDMYAKSGE 384 (590)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~ 384 (590)
++..+-...+.++++.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 348
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.29 E-value=1.4e+02 Score=19.25 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=38.4
Q ss_pred cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 038522 32 TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG 79 (590)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 79 (590)
.++.++...+...-.+++...++++.+.| ..+..+|..-+..+++..
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQ 50 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQ 50 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHH
Confidence 46778888888888999999999999998 678888887777776543
No 349
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=25.20 E-value=4.6e+02 Score=25.10 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=32.7
Q ss_pred cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHH
Q 038522 413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSC 476 (590)
Q Consensus 413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 476 (590)
..+.+-|.++.. +.|++--...|..-.+.+...|++++|.++--...+ |+--+..|.+.
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~--giLRt~~Ti~r 400 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK--GILRTPDTIRR 400 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG--GSSCSHHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc--ccccCHHHHHH
Confidence 355565554443 334444445566666677777777777776655543 44444444433
No 350
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.15 E-value=97 Score=23.69 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=38.2
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChH
Q 038522 34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVL 82 (590)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (590)
..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4566777777777889999999998887778878777788888887543
No 351
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.54 E-value=1.6e+02 Score=19.62 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=36.2
Q ss_pred HHHHHcCCCCcHHHHHHHHHHhhccC-ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522 424 KKMKHEGMVPNDVTFLSLLFACSHTG-LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ 486 (590)
Q Consensus 424 ~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 486 (590)
+.+.+.|+.++..-. .++..+...+ ..-.+.++++.+.+. +...+..|....++.+...|-
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~-~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDM-GEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHh-CCCCCHhhHHHHHHHHHHCCC
Confidence 345567777766543 4445555544 556677788777665 444555666666666665553
No 352
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.35 E-value=2.8e+02 Score=22.81 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=7.0
Q ss_pred HHhcCChHHHHHHhc
Q 038522 75 YAKVGDVLSARKAFD 89 (590)
Q Consensus 75 ~~~~g~~~~a~~~~~ 89 (590)
.++.|+++....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 344455555444443
No 353
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=23.62 E-value=1.3e+02 Score=18.13 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=16.7
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522 527 RNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM 563 (590)
Q Consensus 527 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 563 (590)
+.+.++.| +......---.-...|+.+.|...+-.+
T Consensus 9 ~~L~EMFP-~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 9 SILMDMFP-AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHCS-SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHCC-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 33344555 3333333333333456666666665544
No 354
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=23.54 E-value=1.3e+02 Score=22.57 Aligned_cols=45 Identities=18% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC
Q 038522 406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL 450 (590)
Q Consensus 406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 450 (590)
++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444445556666666666665545555555555555555543
No 355
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=23.40 E-value=3.3e+02 Score=24.59 Aligned_cols=176 Identities=11% Similarity=-0.012 Sum_probs=79.1
Q ss_pred HHHHhcCChHHHHHHHHhcCCCCc-chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH--------------------
Q 038522 377 DMYAKSGEIADANRAFDEMGDKNV-ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND-------------------- 435 (590)
Q Consensus 377 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------------------- 435 (590)
...+..|+.+-+.-+++.-...+. ..++ .+...+..|+.+-+..+++.....|..|+.
T Consensus 58 ~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (364)
T 3ljn_A 58 HLACKFGCVDTAKYLASVGEVHSLWHGQK-PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC 136 (364)
T ss_dssp HHHHHHCCHHHHHHHHHHCCCCCCBTTBC-HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE
T ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCC-HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC
Confidence 344455666666666665443333 2222 233344566766666666654444544443
Q ss_pred HHHHHHHHHhhccC--ChHHHHHHHHHHHhhcCCCCChh---HHHHHHHHHHhcCChHHHHHHHHhc-C---CCC---CH
Q 038522 436 VTFLSLLFACSHTG--LTCEGWELFTDMINKYRILPRAE---HFSCVVDLFARRGQLESAYNMIRQM-N---IKP---TA 503 (590)
Q Consensus 436 ~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p---~~ 503 (590)
...+.|..+ +..| +.+- ++.+.+. |..++.. -.+. +...+..|+.+-+..+++.. . ..+ +.
T Consensus 137 ~g~t~L~~A-~~~g~~~~~~----v~~Ll~~-ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 209 (364)
T 3ljn_A 137 KGQTALHWC-VGLGPEYLEM----IKILVQL-GASPTAKDKADETP-LMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209 (364)
T ss_dssp SCCCHHHHH-HHSCGGGHHH----HHHHHHH-TCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred CCCCHHHHH-HHcCCchHHH----HHHHHHc-CCCCcccCCCCCCH-HHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence 112233333 3334 3333 3333333 4444421 1222 33345667776666666543 1 001 22
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
.....|.. .+..|+.+-+.-+++.-...+..+..-...| ..-+..|+.+-+.-+++.
T Consensus 210 ~g~t~L~~-A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 210 QGNSHLHW-AILINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TCCCTTHH-HHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHH
T ss_pred CCCcHHHH-HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHc
Confidence 22223332 3466777666555554333332222222222 223355776666666654
No 356
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.34 E-value=2.6e+02 Score=26.06 Aligned_cols=56 Identities=11% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHhhccCChHHHHHHHHHHHhhc----C-----------CCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522 442 LFACSHTGLTCEGWELFTDMINKY----R-----------ILPRAEHFSCVVDLFARRGQLESAYNMIRQM 497 (590)
Q Consensus 442 l~~~~~~~~~~~a~~~~~~~~~~~----~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 497 (590)
+.++....+.+++.++++.+.... . ...-......+...|...|+.++|..++++.
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~ 153 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDL 153 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334445566677777776653321 0 0111223334455566666666666666554
No 357
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.29 E-value=1.1e+02 Score=21.40 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 038522 540 YVVLSNIYTAAGAWDNARKTRKL 562 (590)
Q Consensus 540 ~~~l~~~~~~~g~~~~A~~~~~~ 562 (590)
+...+..+.+.|+|++|++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 44456666666666666655444
No 358
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.11 E-value=4.2e+02 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=15.3
Q ss_pred HHHHHHhcCChHHHHHHHHhccCC
Q 038522 273 LIDVYAKYGSIRSAYQLYRSMLKT 296 (590)
Q Consensus 273 l~~~~~~~g~~~~a~~~~~~~~~~ 296 (590)
++.-|...|+.++|...++++..|
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCc
Confidence 555566666777777766666544
No 359
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.00 E-value=48 Score=24.61 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=50.0
Q ss_pred cccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHH
Q 038522 6 ANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR 85 (590)
Q Consensus 6 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 85 (590)
.|.++++|++++.+.. .-..|...+...+..++.+-|.++++..++.| +...+.+.+-.|-..=+++-++
T Consensus 15 ~ykkN~rw~qSI~L~K-------kDkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVL 84 (125)
T 3qil_A 15 VPRGSHMWKQSVELAK-------KDSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVL 84 (125)
T ss_dssp CSSSCCCCSSCCCCCS-------CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHH
T ss_pred hhhccccHHHHHHHHH-------hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHH
Confidence 3566777777764433 23457778888888889988988888887766 5566667666666666666666
Q ss_pred HH
Q 038522 86 KA 87 (590)
Q Consensus 86 ~~ 87 (590)
++
T Consensus 85 El 86 (125)
T 3qil_A 85 EL 86 (125)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 360
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.49 E-value=1.4e+02 Score=21.10 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=27.4
Q ss_pred CChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 038522 383 GEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEA 419 (590)
Q Consensus 383 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 419 (590)
...+.|.++++.+.+..+..|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 4577888888888888888888888888766654433
No 361
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.48 E-value=96 Score=25.79 Aligned_cols=43 Identities=12% Similarity=0.035 Sum_probs=29.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551 (590)
Q Consensus 509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 551 (590)
.+..|.+.|.+++|.+++++..+..|.+...-.-|..+-.+..
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 4457889999999999999999877644434444444443333
No 362
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.33 E-value=3e+02 Score=22.03 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=46.2
Q ss_pred hcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC---------------C-c-HHHHHHHHH
Q 038522 381 KSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV---------------P-N-DVTFLSLLF 443 (590)
Q Consensus 381 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~---------------p-~-~~~~~~ll~ 443 (590)
-.|.+.++.-++.....-...-|.. -+|-+.+++..|+..++.+.+-.+. | | ...++.+..
T Consensus 45 yngEY~R~Lf~L~~lNT~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNTCTSKYYES--LCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp HTTCHHHHHHHHHTCCBHHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hcchHhHHHHHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 3466666666665543222222222 2455667777777777777643332 2 2 234555666
Q ss_pred HhhccCChHHHHHHHHHHHh
Q 038522 444 ACSHTGLTCEGWELFTDMIN 463 (590)
Q Consensus 444 ~~~~~~~~~~a~~~~~~~~~ 463 (590)
.|...|+.++|+..+..--.
T Consensus 123 lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 123 LCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHhhhHhhhhcC
Confidence 67777888888877766553
No 363
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=22.15 E-value=1.2e+02 Score=21.49 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=26.8
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 038522 180 GWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDS 216 (590)
Q Consensus 180 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 216 (590)
...+.|.++++.++.+...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567788888888877778888888887665655444
No 364
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=22.03 E-value=2.7e+02 Score=21.35 Aligned_cols=17 Identities=6% Similarity=-0.164 Sum_probs=9.1
Q ss_pred cccccCChHHHHHHhhh
Q 038522 6 ANFKTGQLKQALKFSLS 22 (590)
Q Consensus 6 ~~~~~g~~~~a~~~~~~ 22 (590)
.-++.|+.+-...+++.
T Consensus 9 ~A~~~g~~~~v~~ll~~ 25 (167)
T 3v31_A 9 QLAAQGEMLYLATRIEQ 25 (167)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHc
Confidence 34455665555555554
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=21.77 E-value=5.6e+02 Score=27.37 Aligned_cols=51 Identities=8% Similarity=-0.060 Sum_probs=38.2
Q ss_pred HHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038522 172 LLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSM 223 (590)
Q Consensus 172 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (590)
++..+...|..+-|.++...++. +...--.+..++...|++++|.+.|++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56667777888888777766664 4433345678899999999999999875
No 366
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.61 E-value=1.7e+02 Score=21.94 Aligned_cols=44 Identities=14% Similarity=-0.033 Sum_probs=23.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCC
Q 038522 203 MIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGI 246 (590)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 246 (590)
++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44444455555666666666666554445545444444443333
No 367
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.45 E-value=1.3e+02 Score=22.74 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCCCCCcccHHHHHHHhhccc-chhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChH
Q 038522 24 PDTLLDPSTYMSLLQFCIDKK-AERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVL 82 (590)
Q Consensus 24 ~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 82 (590)
.|.++++. -..++..+...+ ..-.|.++++.+.+.++..+..|.-.-+..+...|-+.
T Consensus 12 ~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 12 AGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp TTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34444433 344556666665 67789999999988877777777777777888877543
No 368
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.03 E-value=1.2e+02 Score=23.24 Aligned_cols=38 Identities=24% Similarity=0.165 Sum_probs=17.0
Q ss_pred hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC
Q 038522 412 KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG 449 (590)
Q Consensus 412 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 449 (590)
..+++-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 25 ~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 25 EVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp TCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33334445555555554443444444444444444433
No 369
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.90 E-value=1.8e+02 Score=23.90 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=17.1
Q ss_pred HHHHHHHhcCChHHHHHHhccCC
Q 038522 70 KVIIFYAKVGDVLSARKAFDRMP 92 (590)
Q Consensus 70 ~li~~~~~~g~~~~a~~~~~~~~ 92 (590)
..+..|.+.|.+++|.++|++.-
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHccchHHHHHHHHHHh
Confidence 34556888888888888888843
No 370
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.89 E-value=84 Score=26.86 Aligned_cols=28 Identities=7% Similarity=-0.080 Sum_probs=18.5
Q ss_pred HHHhhcccchhHHHHHHHHHHHhcCCCc
Q 038522 37 LQFCIDKKAERQAHLIHAHIITNGYESN 64 (590)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~ 64 (590)
+...++.|+.+.+..+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 4445566777777777777777765444
No 371
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.46 E-value=2.1e+02 Score=22.02 Aligned_cols=34 Identities=6% Similarity=0.040 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG 485 (590)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 485 (590)
.-.|.++++.+.+. +...+..|...-++.+...|
T Consensus 33 h~ta~ei~~~l~~~-~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKT-ASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTT-CTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh-CCCCCHhHHHHHHHHHHHCC
Confidence 44555555555543 33334444444444444444
No 372
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=20.38 E-value=3.3e+02 Score=21.73 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=28.2
Q ss_pred HhcCChHHHHHHhccCCC-CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038522 76 AKVGDVLSARKAFDRMPE-RN-VVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQ 131 (590)
Q Consensus 76 ~~~g~~~~a~~~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 131 (590)
++.|+++....+++.-.. .+ ..-+ +.+...+..|+.+.-.++.+.+.+.|..++.
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 455666666555554322 11 1112 2333444556665556677777777765553
No 373
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.11 E-value=2.6e+02 Score=20.47 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 038522 415 YGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQL 487 (590)
Q Consensus 415 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 487 (590)
.+.+|+.-+++.... .+|......++..+... ++.++++.+...+..|+ .+.++...++...+.|-.
T Consensus 3 ~~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI 69 (119)
T 1wty_A 3 SLARAVERLKAALER--PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLL 69 (119)
T ss_dssp CHHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCC
Confidence 355666666666543 45666666666555432 45666666666654455 344445555555555543
Done!