BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038523
(631 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/599 (67%), Positives = 469/599 (78%), Gaps = 2/599 (0%)
Query: 28 YMKFRDPQQPLSKRIRDLMNRMTLEEKIGQMVQLDRAAATAEIMRDYXXXXXXXXXXXVP 87
Y+ ++D +P+ R+ DL+ RMTL EKIGQM Q++R AT +++RD VP
Sbjct: 2 YVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVP 61
Query: 88 RLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRDP 147
R AT +EW DMV+ FQK +S+RLGIPMIYGIDAVHG NNVY ATIFPHNVGLGATRDP
Sbjct: 62 RKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDP 121
Query: 148 DLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMTEIIPGLQ 207
LV+RIG ATALEVRATGI YAFAPCIAVCRDPRWGRC+ESYSED +IV+ MTE+IPGLQ
Sbjct: 122 YLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQ 181
Query: 208 GDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDA 267
GD+P D G+P+VAG++KVAACAKH+VGDGGT GINENNT+I+R GLM+IHMPAY +A
Sbjct: 182 GDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNA 241
Query: 268 IIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYS 327
+ KGVSTVM+SYSSWNG+KMHAN+DLVT +LK TLKF+GFVISDW+GIDRITTP ++YS
Sbjct: 242 MDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYS 301
Query: 328 YSVLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEK 387
YSV A + AG+DM M+P + FI ILT V ++PMSRIDDAV RILRVKFTMGLFE
Sbjct: 302 YSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFEN 361
Query: 388 PMADQTFIDQLGSQAHRDLAREAVRKSLVLLKNGENA-DGAALPLPKNAARILVAGTHAN 446
P AD +QLG Q HRDLAREA RKSLVLLKNG+ + D LPLPK A +ILVAG+HA+
Sbjct: 362 PYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHAD 421
Query: 447 NLGYQCGGWTIAWQGLSGNNNTVGTTILNGISATVDSDTEIIFSENPSMDYVKASNVSYA 506
NLGYQCGGWTI WQG +G TVGTTIL + A VD T ++F+ENP ++VK+ SYA
Sbjct: 422 NLGYQCGGWTIEWQGDTG-RTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYA 480
Query: 507 IVVVGEQPYAETQGDSLNLTISEPGPSTITNXXXXXXXXXXXXSGRPVTVGPYLPQVDAL 566
IV VGE PY ET+GD+LNLTI EPG ST+ SGRPV V P L DAL
Sbjct: 481 IVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDAL 540
Query: 567 VAAWLPGTEGQGVADVLFGDYGFTGRLPRTWFKTVDQLPMNFGDEQYDPLFPLGFGLTT 625
VAAWLPG+EGQGV D LFGD+GFTGRLPRTWFK+VDQLPMN GD YDPLF LG+GLTT
Sbjct: 541 VAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 599
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/599 (67%), Positives = 469/599 (78%), Gaps = 2/599 (0%)
Query: 28 YMKFRDPQQPLSKRIRDLMNRMTLEEKIGQMVQLDRAAATAEIMRDYXXXXXXXXXXXVP 87
Y+ ++D +P+ R+ DL+ RMTL EKIGQM Q++R AT +++RD VP
Sbjct: 2 YVLYKDATKPVEDRVADLLGRMTLAEKIGQMTQIERLVATPDVLRDNFIGSLLSGGGSVP 61
Query: 88 RLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRDP 147
R AT +EW DMV+ FQK +S+RLGIPMIYGIDAVHG NNVY ATIFPHNVGLGATRDP
Sbjct: 62 RKGATAKEWQDMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGATRDP 121
Query: 148 DLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMTEIIPGLQ 207
LV+RIG ATALEVRATGI YAFAPCIAVCRDPRWGRC+ESYSED +IV+ MTE+IPGLQ
Sbjct: 122 YLVKRIGEATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDRRIVQSMTELIPGLQ 181
Query: 208 GDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDA 267
GD+P D G+P+VAG++KVAACAKH+VGDGGT GINENNT+I+R GLM+IHMPAY +A
Sbjct: 182 GDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNTIINREGLMNIHMPAYKNA 241
Query: 268 IIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYS 327
+ KGVSTVM+SYSSWNG+KMHAN+DLVT +LK TLKF+GFVISDW+GIDRITTP ++YS
Sbjct: 242 MDKGVSTVMISYSSWNGVKMHANQDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSDYS 301
Query: 328 YSVLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEK 387
YSV A + AG+DM M+P + FI ILT V ++PMSRIDDAV RILRVKFTMGLFE
Sbjct: 302 YSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFEN 361
Query: 388 PMADQTFIDQLGSQAHRDLAREAVRKSLVLLKNGENA-DGAALPLPKNAARILVAGTHAN 446
P AD +QLG Q HRDLAREA RKSLVLLKNG+ + D LPLPK A +ILVAG+HA+
Sbjct: 362 PYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPLLPLPKKAPKILVAGSHAD 421
Query: 447 NLGYQCGGWTIAWQGLSGNNNTVGTTILNGISATVDSDTEIIFSENPSMDYVKASNVSYA 506
NLGYQCGGWTI WQG +G TVGTTIL + A VD T ++F+ENP ++VK+ SYA
Sbjct: 422 NLGYQCGGWTIEWQGDTG-RTTVGTTILEAVKAAVDPSTVVVFAENPDAEFVKSGGFSYA 480
Query: 507 IVVVGEQPYAETQGDSLNLTISEPGPSTITNXXXXXXXXXXXXSGRPVTVGPYLPQVDAL 566
IV VGE PY ET+GD+LNLTI EPG ST+ SGRPV V P L DAL
Sbjct: 481 IVAVGEHPYTETKGDNLNLTIPEPGLSTVQAVCGGVRCATVLISGRPVVVQPLLAASDAL 540
Query: 567 VAAWLPGTEGQGVADVLFGDYGFTGRLPRTWFKTVDQLPMNFGDEQYDPLFPLGFGLTT 625
VAAWLPG+EGQGV D LFGD+GFTGRLPRTWFK+VDQLPMN GD YDPLF LG+GLTT
Sbjct: 541 VAAWLPGSEGQGVTDALFGDFGFTGRLPRTWFKSVDQLPMNVGDAHYDPLFRLGYGLTT 599
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/618 (42%), Positives = 355/618 (57%), Gaps = 45/618 (7%)
Query: 32 RDPQQPLSKRIRDLMNRMTLEEKIGQMVQLDRAAATAEIMRDYXXXXXXXXXXXVP--RL 89
RDP + +I L+ +MT+E+K+ QM+Q + T E MR Y P
Sbjct: 18 RDP--AVEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTAPYGNK 75
Query: 90 QATPQEWIDMVNDFQKGSLSSRL---GIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRD 146
+A W+ ++ ++ S L IP ++G DA+HGH+NVY AT+FPHN+GLGA RD
Sbjct: 76 RADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGLGAARD 135
Query: 147 PDLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMT-EIIPG 205
DL++RIG ATA EV ATGI ++FAP +AV RD RWGR +ESYSEDP +VK E++ G
Sbjct: 136 TDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTG 195
Query: 206 LQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYN 265
+QGD+ +D KG + A AKH+VGDGGT RG++ NT+ID GL IH Y
Sbjct: 196 IQGDVGADFLKGSNRI-------ATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYF 248
Query: 266 DAIIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHAN 325
AI +GV +VM S++SWNG ++H ++ L+T+ LK L F GFV+SDW + E +
Sbjct: 249 SAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFV---EGCD 305
Query: 326 YSYSVLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLF 385
A +NAG+D+ M+P + F V+ ++ SRI+DAVRR LR K G+F
Sbjct: 306 LEQCAQA-INAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVF 364
Query: 386 --EKPMA--DQTFIDQLGSQAHRDLAREAVRKSLVLLKNGENADGAALPLPKNAARILVA 441
KP A + LG+ HR LAREAVRKSLVLLKN E + LP+ K ++RILVA
Sbjct: 365 TKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNE----SILPI-KASSRILVA 419
Query: 442 GTHANNLGYQCGGWTIAWQGLSGNNNTV--GTTILNGISATV-DSDTEIIFSENPSMDYV 498
G AN + Q GGW+++WQG N+ T+I +G+ + V + +I SE S +Y
Sbjct: 420 GKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSE--SGEYT 477
Query: 499 KASNVSYAIVVVGEQPYAETQGDSLNLTISEPGPSTITNXXXXXX----XXXXXXSGRPV 554
+V AIVV+GE+PYAE GD L + SGRP+
Sbjct: 478 SKPDV--AIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVTVFLSGRPL 535
Query: 555 TVGPYLPQVDALVAAWLPGTEGQGVADVLFGD------YGFTGRLPRTWFKTVDQLPMNF 608
V L DA VAAWLPG+EG+GVADVL + + FTG+L +W K DQ +N
Sbjct: 536 WVNKELNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNL 595
Query: 609 GDEQYDPLFPLGFGLTTE 626
D YDPLF G+GLT +
Sbjct: 596 NDADYDPLFAYGYGLTYQ 613
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 262/618 (42%), Positives = 355/618 (57%), Gaps = 45/618 (7%)
Query: 32 RDPQQPLSKRIRDLMNRMTLEEKIGQMVQLDRAAATAEIMRDYXXXXXXXXXXXVP--RL 89
RDP + +I L+ +MT+E+K+ QM+Q + T E MR Y P
Sbjct: 18 RDP--AVEAQIEKLLAKMTIEQKVAQMIQPEIGYLTVEQMRKYGFGSYLNGGNTAPYGNK 75
Query: 90 QATPQEWIDMVNDFQKGSLSSRL---GIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRD 146
+A W+ ++ ++ S L IP ++G DA+HGH+NVY AT+FPHN+GLGA RD
Sbjct: 76 RADQATWLKYADEMYLAAMDSTLDGIAIPTVWGTDAMHGHSNVYGATLFPHNIGLGAARD 135
Query: 147 PDLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMT-EIIPG 205
DL++RIG ATA EV ATGI ++FAP +AV RD RWGR +ESYSEDP +VK E++ G
Sbjct: 136 TDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTG 195
Query: 206 LQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYN 265
+QGD+ +D KG + A AKH+VGDGGT RG++ NT+ID GL IH Y
Sbjct: 196 IQGDVGADFLKGSNRI-------ATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYF 248
Query: 266 DAIIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHAN 325
AI +GV +VM S++SWNG ++H ++ L+T+ LK L F GFV+SDW + E +
Sbjct: 249 SAINQGVQSVMASFNSWNGKRVHGDKHLLTDVLKNQLGFDGFVVSDWNAHKFV---EGCD 305
Query: 326 YSYSVLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLF 385
A +NAG+D+ M+P + F V+ ++ SRI+DAVRR LR K G+F
Sbjct: 306 LEQCAQA-INAGVDVIMVPEHFEAFYHNTVKQVKAGVIAESRINDAVRRFLRAKIRWGVF 364
Query: 386 --EKPMA--DQTFIDQLGSQAHRDLAREAVRKSLVLLKNGENADGAALPLPKNAARILVA 441
KP A + LG+ HR LAREAVRKSLVLLKN E + LP+ K ++RILVA
Sbjct: 365 TKSKPSARPESQHPQWLGAAEHRTLAREAVRKSLVLLKNNE----SILPI-KASSRILVA 419
Query: 442 GTHANNLGYQCGGWTIAWQGLSGNNNTV--GTTILNGISATV-DSDTEIIFSENPSMDYV 498
G AN + Q GGW+++WQG N+ T+I +G+ + V + +I SE S +Y
Sbjct: 420 GKGANAINMQAGGWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKITLSE--SGEYT 477
Query: 499 KASNVSYAIVVVGEQPYAETQGDSLNLTISEPGPSTITNXXXXXX----XXXXXXSGRPV 554
+V AIVV+GE+PYAE GD L + SGRP+
Sbjct: 478 SKPDV--AIVVIGEEPYAEWFGDIELLEFQHETKHALALLKQLKADNIPVVTVFLSGRPL 535
Query: 555 TVGPYLPQVDALVAAWLPGTEGQGVADVLFGD------YGFTGRLPRTWFKTVDQLPMNF 608
V L DA VAAWLPG+EG+GVADVL + + FTG+L +W K DQ +N
Sbjct: 536 WVNKELNASDAFVAAWLPGSEGEGVADVLLTNKQGKTQFDFTGKLSFSWPKYDDQFTLNL 595
Query: 609 GDEQYDPLFPLGFGLTTE 626
D YDPLF G+GLT +
Sbjct: 596 NDADYDPLFAYGYGLTYQ 613
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 155/349 (44%), Gaps = 54/349 (15%)
Query: 111 RLGIPMIYGIDAVHG---------HNNVYKATIFPHNVGLGATRDPDLVRRIGAATALEV 161
R+G+P D G N Y T FP + L +T + +L+ +G A EV
Sbjct: 48 RVGLPAFVLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEV 107
Query: 162 RATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMTEIIPGLQGDIPSDLPKGIPYV 221
R G++ AP + + R+P GR FE YSEDP L G++ S KG+
Sbjct: 108 REYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPV-----------LSGEMASSFVKGVQ-- 154
Query: 222 AGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAIIKGVS-TVMVSYS 280
V AC KH+V + T + +T++ L I++ + A+ K +VM +Y+
Sbjct: 155 --SQGVGACIKHFVANNQETNRMV-VDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYN 211
Query: 281 SWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDM 340
NG N L+ L+ F GFV+SDW D + + + AG D+
Sbjct: 212 KLNGKYCSQNEWLLKKVLREEWGFEGFVMSDWYAGD------------NPVEQLKAGNDL 259
Query: 341 FM------LPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQTF 394
M + D I+ + + ++ + +D+ VR IL+V F+ + +
Sbjct: 260 IMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFK----NYRY 315
Query: 395 IDQLGSQAHRDLAREAVRKSLVLLKNGENADGAALPLPKNAARILVAGT 443
++ + H +A EA + +VLL+N E ALPL +N ++I + GT
Sbjct: 316 SNKPDLEKHAKVAYEAGAEGVVLLRNEE-----ALPLSEN-SKIALFGT 358
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 551 GRPVTVGPYLPQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTWFKTVDQLP 605
G PV V + VD ++ W G E G+ VADVL G +G+LP T+ + +P
Sbjct: 500 GSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDVP 555
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 154/349 (44%), Gaps = 54/349 (15%)
Query: 111 RLGIPMIYGIDAVHG---------HNNVYKATIFPHNVGLGATRDPDLVRRIGAATALEV 161
R+G+P D G N Y T FP + L +T + +L+ +G A EV
Sbjct: 48 RVGLPAFVLADGPAGLRINPTRENDENTYYTTAFPVEIMLASTWNRELLEEVGKAMGEEV 107
Query: 162 RATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMTEIIPGLQGDIPSDLPKGIPYV 221
R G++ AP + + R+P GR FE YSEDP L G++ S KG+
Sbjct: 108 REYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPV-----------LSGEMASSFVKGVQ-- 154
Query: 222 AGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAIIKGVS-TVMVSYS 280
V AC KH+V + T + +T++ L I++ + A+ K +VM +Y+
Sbjct: 155 --SQGVGACIKHFVANNQETNRMV-VDTIVSERALREIYLRGFEIAVKKSKPWSVMSAYN 211
Query: 281 SWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDM 340
NG N L+ L+ F GFV+S W D + + + AG D+
Sbjct: 212 KLNGKYCSQNEWLLKKVLREEWGFEGFVMSAWYAGD------------NPVEQLKAGNDL 259
Query: 341 FM------LPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQTF 394
M + D I+ + + ++ + +D+ VR IL+V F+ + +
Sbjct: 260 IMPGKAYQVNTERRDEIEEIMEALKEGKLSEEVLDECVRNILKVLVNAPSFK----NYRY 315
Query: 395 IDQLGSQAHRDLAREAVRKSLVLLKNGENADGAALPLPKNAARILVAGT 443
++ + H +A EA + +VLL+N E ALPL +N ++I + GT
Sbjct: 316 SNKPDLEKHAKVAYEAGAEGVVLLRNEE-----ALPLSEN-SKIALFGT 358
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 551 GRPVTVGPYLPQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTWFKTVDQLP 605
G PV V + VD ++ W G E G+ VADVL G +G+LP T+ + +P
Sbjct: 500 GSPVEVVSWRDLVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTTFPRDYSDVP 555
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/364 (26%), Positives = 153/364 (42%), Gaps = 45/364 (12%)
Query: 102 DFQKGSLSSRLGIPMIYGIDAVHGHNNV-----YKATIFPHNVGLGATRDPDLVRRIGAA 156
DF RLGIP + D +G + FP+ GL +T D DL+ G
Sbjct: 26 DFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKL 85
Query: 157 TALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMT-EIIPGLQGDIPSDLP 215
A E A P + R P GR FES+SEDP + + T ++ G+QG
Sbjct: 86 MAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQG------- 138
Query: 216 KGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAIIKGVST- 274
+ +AA KH+V + + + N+ V +R L I++ + A+
Sbjct: 139 ---------EGIAATVKHFVCNDLEDQRFSSNSIVSER-ALREIYLEPFRLAVKHANPVC 188
Query: 275 VMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGV 334
+M +Y+ NG ++ L+ + L+ K+ G ++SDW G +Y+ A +
Sbjct: 189 IMTAYNKVNGEHCSQSKKLLIDILRDEWKWDGMLMSDWFG------------TYTTAAAI 236
Query: 335 NAGIDM-FMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILR-VKFTMGLFEKPMADQ 392
G+D+ F P + R+ + +DD VR++L+ +KF + EK +
Sbjct: 237 KNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKMIKFVVDNLEKTGIVE 296
Query: 393 TFIDQLGSQAHR--DLAREAVRKSLVLLKNGENADGAALPLPKNAARILVAGTHANNLGY 450
+ + DL R+ S+VLLKN N LPL K I+V G +A
Sbjct: 297 NGPESTSNNTKETSDLLRKIAADSIVLLKNKNN----ILPLKKE-DNIIVIGPNAKAKTS 351
Query: 451 QCGG 454
GG
Sbjct: 352 SGGG 355
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 24/98 (24%)
Query: 550 SGRPVTVGPYLPQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTW-FKTVDQLP-M 606
SG PV P+L +ALV AW G E G +ADVL+GD G+L +W FK D +
Sbjct: 623 SGTPVEF-PWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFL 681
Query: 607 NFGDE---------------QYDPL-----FPLGFGLT 624
NF E Y+ L FP G+GL+
Sbjct: 682 NFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLS 719
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 148/579 (25%), Positives = 222/579 (38%), Gaps = 108/579 (18%)
Query: 107 SLSSRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRDPDLVRRIGAATALEVRATGI 166
S +S++ P + D G +T F V +T D +L+R G EV+A+GI
Sbjct: 48 SPASKISYPSLCLQDGPLGVRYSTGSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGI 107
Query: 167 NYAFAPCIA-VCRDPRWGRCFESYSEDPKIVKL-MTEIIPGLQGDIPSDLPKGIPYVAGR 224
+ P + + P+ GR +E + DP + + M + I G+Q
Sbjct: 108 HVILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ----------------S 151
Query: 225 DKVAACAKHYVGDGGTTRGINE---NNTVI----DRHGLMSIHMPAYNDAIIKGVSTVMV 277
V A AKHY+ +NE N I D L ++ + DA+ V++VM
Sbjct: 152 VGVQATAKHYI--------LNEQELNRETISSNPDDRTLHELYTWPFADAVQANVASVMC 203
Query: 278 SYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAG 337
SY+ N ++ + LK L F G+V++DW N ++ + N+G
Sbjct: 204 SYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDW------------NAQHTTVQSANSG 251
Query: 338 IDMFM--LPFNHTDFI--DILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQT 393
+DM M FN + + LT+ V VP SR+DD V RIL + G + +
Sbjct: 252 LDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTG--QDQAGYPS 309
Query: 394 FIDQLGSQA-HRDLAREAVRKSLVLLKNGENADGAALPLPKNAARILVA-----GTHA-- 445
F Q H+ R R +VLLKN D LPL K A+ +V G HA
Sbjct: 310 FNISRNVQGNHKTNVRAIARDGIVLLKN----DANILPLKKPASIAVVGSAAIIGNHARN 365
Query: 446 ----NNLGYQCGGWTIAWQGLSGNNNTVGTTILNGISATVDSD-TEIIFS--ENPSMDYV 498
N+ G G + W G N + I+ S T++ S +N S
Sbjct: 366 SPSCNDKGCDDGALGMGW-GSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGAS 424
Query: 499 KASNVSYAIVVV------GEQPYAETQGDSLNLTISEPGPSTITNXXXXXXXXXXXXSGR 552
A AIV + G GD NL G + +
Sbjct: 425 AARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSNVIVVVH-- 482
Query: 553 PVTVGPYL-------PQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTWFKTVDQL 604
+VG + PQV A+V A LP E G + DVL+GD +G+L T K+ +
Sbjct: 483 --SVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDY 540
Query: 605 PM-------------------NFGDEQYDPLFPLGFGLT 624
+F D P + G+GL+
Sbjct: 541 NTRIVSGGSDSFSEGLFIDYKHFDDANITPRYEFGYGLS 579
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 148/579 (25%), Positives = 222/579 (38%), Gaps = 108/579 (18%)
Query: 107 SLSSRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRDPDLVRRIGAATALEVRATGI 166
S +S++ P + D G +T F V +T D +L+R G EV+A+GI
Sbjct: 47 SPASKISYPSLCLQDGPLGVRYSTGSTAFTPGVQAASTWDVNLIRERGQFIGEEVKASGI 106
Query: 167 NYAFAPCIA-VCRDPRWGRCFESYSEDPKIVKL-MTEIIPGLQGDIPSDLPKGIPYVAGR 224
+ P + + P+ GR +E + DP + + M + I G+Q
Sbjct: 107 HVILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQ----------------S 150
Query: 225 DKVAACAKHYVGDGGTTRGINE---NNTVI----DRHGLMSIHMPAYNDAIIKGVSTVMV 277
V A AKHY+ +NE N I D L ++ + DA+ V++VM
Sbjct: 151 VGVQATAKHYI--------LNEQELNRETISSNPDDRTLHELYTWPFADAVQANVASVMC 202
Query: 278 SYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAG 337
SY+ N ++ + LK L F G+V++DW N ++ + N+G
Sbjct: 203 SYNKVNTTWACEDQYTLQTVLKDQLGFPGYVMTDW------------NAQHTTVQSANSG 250
Query: 338 IDMFM--LPFNHTDFI--DILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQT 393
+DM M FN + + LT+ V VP SR+DD V RIL + G + +
Sbjct: 251 LDMSMPGTDFNGNNRLWGPALTNAVNSNQVPTSRVDDMVTRILAAWYLTG--QDQAGYPS 308
Query: 394 FIDQLGSQA-HRDLAREAVRKSLVLLKNGENADGAALPLPKNAARILVA-----GTHA-- 445
F Q H+ R R +VLLKN D LPL K A+ +V G HA
Sbjct: 309 FNISRNVQGNHKTNVRAIARDGIVLLKN----DANILPLKKPASIAVVGSAAIIGNHARN 364
Query: 446 ----NNLGYQCGGWTIAWQGLSGNNNTVGTTILNGISATVDSD-TEIIFS--ENPSMDYV 498
N+ G G + W G N + I+ S T++ S +N S
Sbjct: 365 SPSCNDKGCDDGALGMGW-GSGAVNYPYFVAPYDAINTRASSQGTQVTLSNTDNTSSGAS 423
Query: 499 KASNVSYAIVVV------GEQPYAETQGDSLNLTISEPGPSTITNXXXXXXXXXXXXSGR 552
A AIV + G GD NL G + +
Sbjct: 424 AARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSNVIVVVH-- 481
Query: 553 PVTVGPYL-------PQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTWFKTVDQL 604
+VG + PQV A+V A LP E G + DVL+GD +G+L T K+ +
Sbjct: 482 --SVGAIILEQILALPQVKAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDY 539
Query: 605 PM-------------------NFGDEQYDPLFPLGFGLT 624
+F D P + G+GL+
Sbjct: 540 NTRIVSGGSDSFSEGLFIDYKHFDDANITPRYEFGYGLS 578
>pdb|3BMX|A Chain A, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3BMX|B Chain B, Beta-N-Hexosaminidase (Ybbd) From Bacillus Subtilis
pdb|3NVD|A Chain A, Structure Of Ybbd In Complex With Pugnac
pdb|3NVD|B Chain B, Structure Of Ybbd In Complex With Pugnac
Length = 642
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/473 (23%), Positives = 196/473 (41%), Gaps = 93/473 (19%)
Query: 32 RDPQQPLSKRIRD---LMNRMTLEEKIGQMVQLD-----------------RAAATAEIM 71
R + SKR D ++NRM+L+EK+GQM+ D A ++
Sbjct: 22 RQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLV 81
Query: 72 RDYXXXXXXXXXXXVPRLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHG-HNNVY 130
+ Y V T ++ + + +D+QK S IP++ ID G +
Sbjct: 82 KKYQFGGIILFAENV----KTTKQTVQLTDDYQKASPK----IPLMLSIDQEGGIVTRLG 133
Query: 131 KATIFPHNVGLGATRDPDLVRRIGAATALEVRATGINYAFAPCIAVCRDPR----WGRCF 186
+ T FP N+ LGA R + G+ E+ A GIN F+P + + +P R F
Sbjct: 134 EGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSF 193
Query: 187 ESYSEDPKIVKLMTEIIPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINE 246
S E + L T + GLQ R +A+ KH+ G G T +
Sbjct: 194 SSNRELTSRLGLYT--MKGLQ----------------RQDIASALKHFPGHGDTDVDSHY 235
Query: 247 NNTVIDRHG---LMSIHMPAYNDAIIKGVSTVMVSY------------SSWNG----LKM 287
++ HG L + + + AI G VM ++ S +G +
Sbjct: 236 GLPLVS-HGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPA 294
Query: 288 HANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLPFNH 347
++ ++T L+ + F G +++D + I +H +V+ V AG+D+ ++P +
Sbjct: 295 TLSKKVMTGLLRQEMGFNGVIVTDALNMKAIA--DHFGQEEAVVMAVKAGVDIALMPASV 352
Query: 348 TDF---------IDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQT----- 393
T I L + V+ +P +I+++V RI+ +K G++ +D T
Sbjct: 353 TSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIA 412
Query: 394 -FIDQLGSQAHRDLAREAVRKSLVLLKNGENADGAALPL-PKNAARILVAGTH 444
+GS+ H ++ K++ +LKN ++ LP PK +RIL+ +
Sbjct: 413 KAKKIVGSKQHLKAEKKLAEKAVTVLKNEQH----TLPFKPKKGSRILIVAPY 461
>pdb|4GYJ|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYJ|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1)
pdb|4GYK|A Chain A, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
pdb|4GYK|B Chain B, Crystal Structure Of Mutant (D318n) Bacillus Subtilus
Family 3 Glycoside Hydrolase (Nagz) In Complex With
Glcnac-Murnac (Space Group P1211)
Length = 648
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 110/469 (23%), Positives = 195/469 (41%), Gaps = 93/469 (19%)
Query: 32 RDPQQPLSKRIRD---LMNRMTLEEKIGQMVQLD-----------------RAAATAEIM 71
R + SKR D ++NRM+L+EK+GQM+ D A ++
Sbjct: 26 RQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLV 85
Query: 72 RDYXXXXXXXXXXXVPRLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHG-HNNVY 130
+ Y V T ++ + + +D+QK S IP++ ID G +
Sbjct: 86 KKYQFGGIILFAENV----KTTKQTVQLTDDYQKASPK----IPLMLSIDQEGGIVTRLG 137
Query: 131 KATIFPHNVGLGATRDPDLVRRIGAATALEVRATGINYAFAPCIAVCRDPR----WGRCF 186
+ T FP N+ LGA R + G+ E+ A GIN F+P + + +P R F
Sbjct: 138 EGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSF 197
Query: 187 ESYSEDPKIVKLMTEIIPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINE 246
S E + L T + GLQ R +A+ KH+ G G T +
Sbjct: 198 SSNRELTSRLGLYT--MKGLQ----------------RQDIASALKHFPGHGDTDVDSHY 239
Query: 247 NNTVIDRHG---LMSIHMPAYNDAIIKGVSTVMVSY------------SSWNG----LKM 287
++ HG L + + + AI G VM ++ S +G +
Sbjct: 240 GLPLVS-HGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPA 298
Query: 288 HANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLPFNH 347
++ ++T L+ + F G ++++ + I +H +V+ V AG+D+ ++P +
Sbjct: 299 TLSKKVMTGLLRQEMGFNGVIVTNALNMKAIA--DHFGQEEAVVMAVKAGVDIALMPASV 356
Query: 348 TDF---------IDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQT----- 393
T I L + V+ +P +I+++V RI+ +K G++ +D T
Sbjct: 357 TSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIA 416
Query: 394 -FIDQLGSQAHRDLAREAVRKSLVLLKNGENADGAALPL-PKNAARILV 440
+GS+ H ++ K++ +LKN ++ LP PK +RIL+
Sbjct: 417 KAKKIVGSKQHLKAEKKLAEKAVTVLKNEQH----TLPFKPKKGSRILI 461
>pdb|3LK6|A Chain A, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|B Chain B, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|C Chain C, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
pdb|3LK6|D Chain D, Beta-N-Hexosaminidase N318d Mutant (Ybbd_n318d) From
Bacillus Subtilis
Length = 616
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 109/466 (23%), Positives = 194/466 (41%), Gaps = 93/466 (19%)
Query: 39 SKRIRD---LMNRMTLEEKIGQMVQLD-----------------RAAATAEIMRDYXXXX 78
SKR D ++NRM+L+EK+GQM+ D A +++ Y
Sbjct: 3 SKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGG 62
Query: 79 XXXXXXXVPRLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHG-HNNVYKATIFPH 137
V T ++ + + +D+QK S IP++ ID G + + T FP
Sbjct: 63 IILFAENV----KTTKQTVQLTDDYQKASPK----IPLMLSIDQEGGIVTRLGEGTNFPG 114
Query: 138 NVGLGATRDPDLVRRIGAATALEVRATGINYAFAPCIAVCRDPR----WGRCFESYSEDP 193
N+ LGA R + G+ E+ A GIN F+P + + +P R F S E
Sbjct: 115 NMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELT 174
Query: 194 KIVKLMTEIIPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDR 253
+ L T + GLQ R +A+ KH+ G G T + ++
Sbjct: 175 SRLGLYT--MKGLQ----------------RQDIASALKHFPGHGDTDVDSHYGLPLVS- 215
Query: 254 HG---LMSIHMPAYNDAIIKGVSTVMVSY------------SSWNG----LKMHANRDLV 294
HG L + + + AI G VM ++ S +G + ++ ++
Sbjct: 216 HGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVM 275
Query: 295 TNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLPFNHTDF---- 350
T L+ + F G ++++ + I +H +V+ V AG+D+ ++P + T
Sbjct: 276 TGLLRQEMGFNGVIVTNALNMKAIA--DHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQ 333
Query: 351 -----IDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQT------FIDQLG 399
I L + V+ +P +I+++V RI+ +K G++ +D T +G
Sbjct: 334 KFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVG 393
Query: 400 SQAHRDLAREAVRKSLVLLKNGENADGAALPL-PKNAARILVAGTH 444
S+ H ++ K++ +LKN ++ LP PK +RIL+ +
Sbjct: 394 SKQHLKAEKKLAEKAVTVLKNEQH----TLPFKPKKGSRILIVAPY 435
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 140/336 (41%), Gaps = 35/336 (10%)
Query: 111 RLGIPMIYGIDAVHGHNNVYK-ATIFPHNVGLGATRDPDLVRRIGAATALEVRATGINYA 169
RLGIP + D +G V + AT P V L +T D + G + RA +
Sbjct: 89 RLGIPELRAADGPNGIRLVGQTATALPAPVALASTFDDTMADSYGKVMGRDGRALNQDMV 148
Query: 170 FAPCIAVCRDPRWGRCFESYSEDPKIVKLMTEI--IPGLQGDIPSDLPKGIPYVAGRDKV 227
P + R P GR +E++SEDP +V T + I G+QG AG +
Sbjct: 149 LGPMMNNIRVPHGGRNYETFSEDP-LVSSRTAVAQIKGIQG-------------AG---L 191
Query: 228 AACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAIIKGVSTVMVSYSSWNGLKM 287
AKH+ + + N V D L I PA+ + G ++ M +Y+ NG
Sbjct: 192 MTTAKHFAANNQENNRFSVNANV-DEQTLREIEFPAFEASSKAGAASFMCAYNGLNGKPS 250
Query: 288 HANRDLVTNFLKGTLKFRGFVISDW---QGIDRITTPEHANYSYSVLAGVNAGIDMFMLP 344
N +L+ N L+ F+G+V+SDW G D IT + V G
Sbjct: 251 CGNDELLNNVLRTQWGFQGWVMSDWLATPGTDAITKGLDQEMGVELPGDVPKGEPSPPAK 310
Query: 345 FNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQTFIDQLGSQAHR 404
F F + L V VP + + + RI+ GL A + D+ G+QA
Sbjct: 311 F----FGEALKTAVLNGTVPEAAVTRSAERIVGQMEKFGLLLATPAPRPERDKAGAQA-- 364
Query: 405 DLAREAVRKSLVLLKNGENADGAALPLPKNAARILV 440
++R+ VLL+N +G ALPL +A + +
Sbjct: 365 -VSRKVAENGAVLLRN----EGQALPLAGDAGKSIA 395
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 26/93 (27%)
Query: 558 PYLPQVDALVAAWLPGTEG-QGVADVLFGDYGFTGRLPRTWFKTVDQLPMN--------- 607
P+L + A++ W PG G + A +L+GD +G+L +++ +Q +
Sbjct: 619 PWLSKTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQSFPAAENQHAVAGDPTSYPGV 678
Query: 608 ----------------FGDEQYDPLFPLGFGLT 624
F E PLFP G GL+
Sbjct: 679 DNQQTYREGIHVGYRWFDKENVKPLFPFGHGLS 711
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 47/356 (13%)
Query: 102 DFQKGSLSSRLGIPMIYGIDAVHGHNNV-----YKATIFPHNVGLGATRDPDLVRRIGAA 156
DF RLGIP + D +G + FP+ GL +T D DL+ G
Sbjct: 26 DFWHTKKIERLGIPAVRVSDGPNGIRGTKFFDGVPSGCFPNGTGLASTFDRDLLETAGKL 85
Query: 157 TALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMT-EIIPGLQGDIPSDLP 215
A E A P R P GR FES+SEDP + T ++ G QG
Sbjct: 86 XAKESIAKNAAVILGPTTNXQRGPLGGRGFESFSEDPYLAGXATSSVVKGXQG------- 138
Query: 216 KGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAIIKGVSTV 275
+ +AA KH+V + + + N+ V +R L I++ + A +K + V
Sbjct: 139 ---------EGIAATVKHFVCNDLEDQRFSSNSIVSER-ALREIYLEPFRLA-VKHANPV 187
Query: 276 MV--SYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAG 333
+ +Y+ NG ++ L+ + L+ K+ G + SDW G +Y+ A
Sbjct: 188 CIXTAYNKVNGEHCSQSKKLLIDILRDEWKWDGXLXSDWFG------------TYTTAAA 235
Query: 334 VNAGIDM-FMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILR-VKFTMGLFEKPMAD 391
+ G+D+ F P + R+ + +DD VR++L+ +KF + EK
Sbjct: 236 IKNGLDIEFPGPTRWRTRALVSHSLNSREQITTEDVDDRVRQVLKXIKFVVDNLEKTGIV 295
Query: 392 QTFIDQLGSQAHR--DLAREAVRKSLVLLKNGENADGAALPLPKNAARILVAGTHA 445
+ + + DL R+ S+VLLKN N LPL K I+V G +A
Sbjct: 296 ENGPESTSNNTKETSDLLRKIAADSIVLLKNKNN----ILPL-KKEDNIIVIGPNA 346
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 24/98 (24%)
Query: 550 SGRPVTVGPYLPQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTW-FKTVDQLP-M 606
SG PV P+L +ALV AW G E G +ADVL+GD G+L +W FK D +
Sbjct: 623 SGTPVEF-PWLEDANALVQAWYGGNELGNAIADVLYGDVVPNGKLSLSWPFKLQDNPAFL 681
Query: 607 NFGDE---------------QYDPL-----FPLGFGLT 624
NF E Y+ L FP G+GL+
Sbjct: 682 NFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLS 719
>pdb|3SQL|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQL|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus
pdb|3SQM|A Chain A, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|B Chain B, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|C Chain C, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
pdb|3SQM|D Chain D, Crystal Structure Of Glycoside Hydrolase From
Synechococcus Complexed With N-Acetyl-D-Glucosamine
Length = 535
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 108 LSSRLGIPMIYGIDAVHGHNNVYK-ATIFPHNVGLGAT--RDPD----LVRRIGAATALE 160
L S IP++ D G ++ AT FP G DP L GA TA E
Sbjct: 78 LQSWAEIPLLIAADIEEGVGQRFRGATEFPPPXAFGEIWRTDPHQAIALAETXGATTAQE 137
Query: 161 VRATGINYAFAPCIAVCRDPRWGRC-FESYSEDP-KIVKLMTEIIPGLQGDIPSDLPKGI 218
+ GIN+ AP + V +P ++ E P ++ L T I G Q
Sbjct: 138 ALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQ----------- 186
Query: 219 PYVAGRDKVAACAKHYVGDGGTTRGINENNTVI--DRHGLMSIHMPAYNDAIIKGVSTVM 276
+ V AKH+ G G T + I D L ++ +P + AI GV V
Sbjct: 187 -----QYAVLTTAKHFPGHGDTATDSHLALPTISHDDTRLNTVELPPFKAAIQGGVDAVX 241
Query: 277 VSY---SSWN-GLKMHANRDLVTNFLKGTLKFRGFVISD---WQGIDRITTPEHANYSYS 329
++ +W+ + ++T L+ L F+G +++D GI + P+
Sbjct: 242 NAHLXIPAWDQQYPATLSPAILTGQLRHKLGFKGLIVTDALVXGGITQFAAPDTV----- 296
Query: 330 VLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVK 379
V+ + AG D+ + P + I + ++ + SRI ++V RI + K
Sbjct: 297 VVQAIAAGADILLXPPDVDGAIIAIETAIKTGQLSESRIYESVERIWQAK 346
>pdb|3TEV|A Chain A, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
pdb|3TEV|B Chain B, The Crystal Structure Of Glycosyl Hydrolase From
Deinococcus Radiodurans R1
Length = 351
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 43/221 (19%)
Query: 136 PHNVGLGATRDPDLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFE-SYSEDPK 194
P LGA D L + AA A ++R+ GIN+ F P + + +P + +Y D
Sbjct: 96 PSAXSLGAADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNPANPVIGDRAYGSDAA 155
Query: 195 IVKLMTEIIPGLQGDIPSDLPKGIPYVAG--RDKVAACAKHYVGDGGTTRG-------IN 245
V G +AG R+ VA CAKH+ G G T + ++
Sbjct: 156 RVTR-----------------HGRAALAGHTREGVAPCAKHFPGHGDTHQDSHLALPRVS 198
Query: 246 ENNTVIDRHGLMSIHMPAYNDAIIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLK-- 303
++ +D L A++ + ++ ++ L L L G L+
Sbjct: 199 KSRAELDAGELAPFR------ALLPETPAIXTAHIVYDALDAEHPATLSPRILTGLLREE 252
Query: 304 --FRGFVISDWQGIDRITTPEHANYSY--SVLAGVNAGIDM 340
+ G +++D G I ANY + + + AG D+
Sbjct: 253 WGYDGVIVTDSXGXQAID----ANYGRGEAAVRALRAGADL 289
>pdb|4G6C|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
pdb|4G6C|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
Length = 348
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 111/275 (40%), Gaps = 69/275 (25%)
Query: 133 TIFPHNVGLGATRDPDLVRRIGAATAL------EVRATGINYAFAPCIAVCRDPRWGRCF 186
T+ P LG D D++ ATA+ E+RA GI+ +F P + D +G
Sbjct: 86 TVLPAMRRLGELWDRDVLLATKVATAVGYILAAELRACGIDMSFTPVL----DLDYGHSK 141
Query: 187 ----ESYSEDPKIVKLMTEIIPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTR 242
++ DP++V L+ + L G+ +AG +A C KH+ G G
Sbjct: 142 VIGDRAFHRDPRVVTLLAK-----------SLNHGLS-LAG---MANCGKHFPGHGFAE- 185
Query: 243 GINENNTVIDRHGLMSIHMPAYNDAIIKGVSTVMVSYSSWNGLKMHA------------- 289
D H + +P +D + + V+ W GL + A
Sbjct: 186 --------ADSH----VALPT-DDRTLDAILEQDVAPYDWLGLSLAAVIPAHVIYTQVDK 232
Query: 290 -----NRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLP 344
+R + + L+G L F G + SD ++ E + + A + AG DM +L
Sbjct: 233 RPAGFSRVWLQDILRGKLGFTGAIFSDDLSME--AAREGGTLTQAADAALAAGCDM-VLV 289
Query: 345 FNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVK 379
N D +++ + ++ + ++VRRI R++
Sbjct: 290 CNQPDAAEVVLNGLKARASA-----ESVRRIKRMR 319
>pdb|4GNV|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
pdb|4GNV|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
Length = 350
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 111/275 (40%), Gaps = 69/275 (25%)
Query: 133 TIFPHNVGLGATRDPDLVRRIGAATAL------EVRATGINYAFAPCIAVCRDPRWGRCF 186
T+ P LG D D++ ATA+ E+RA GI+ +F P + D +G
Sbjct: 88 TVLPAMRRLGELWDRDVLLATKVATAVGYILAAELRACGIDMSFTPVL----DLDYGHSK 143
Query: 187 ----ESYSEDPKIVKLMTEIIPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTR 242
++ DP++V L+ + L G+ +AG +A C KH+ G G
Sbjct: 144 VIGDRAFHRDPRVVTLLAK-----------SLNHGLS-LAG---MANCGKHFPGHGFAE- 187
Query: 243 GINENNTVIDRHGLMSIHMPAYNDAIIKGVSTVMVSYSSWNGLKMHA------------- 289
D H + +P +D + + V+ W GL + A
Sbjct: 188 --------ADSH----VALPT-DDRTLDAILEQDVAPYDWLGLSLAAVIPAHVIYTQVDK 234
Query: 290 -----NRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLP 344
+R + + L+G L F G + SD ++ E + + A + AG DM +L
Sbjct: 235 RPAGFSRVWLQDILRGKLGFTGAIFSDDLSME--AAREGGTLTQAADAALAAGCDM-VLV 291
Query: 345 FNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVK 379
N D +++ + ++ + ++VRRI R++
Sbjct: 292 CNQPDAAEVVLNGLKARASA-----ESVRRIKRMR 321
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 122 AVHGHNNVYKATIFPHNVGLGATRDPDLVRRI 153
A H N+ ++ + H G+GA D DLVR I
Sbjct: 68 ASHDLENLQRSLVLSHAAGIGAPLDDDLVRLI 99
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 122 AVHGHNNVYKATIFPHNVGLGATRDPDLVRRI 153
A H N+ ++ + H G+GA D DLVR I
Sbjct: 68 ASHDLENLQRSLVLSHAAGIGAPLDDDLVRLI 99
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 122 AVHGHNNVYKATIFPHNVGLGATRDPDLVRRI 153
A H N+ ++ + H G+GA D DLVR I
Sbjct: 68 ASHDLENLQRSLVLSHAAGIGAPLDDDLVRLI 99
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 122 AVHGHNNVYKATIFPHNVGLGATRDPDLVRRI 153
A H N+ ++ + H G+GA D DLVR I
Sbjct: 68 ASHDLENLQRSLVLSHAAGIGAPLDDDLVRLI 99
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 122 AVHGHNNVYKATIFPHNVGLGATRDPDLVRRI 153
A H N+ ++ + H G+GA D DLVR I
Sbjct: 68 ASHDLENLQRSLVLSHAAGIGAPLDDDLVRLI 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,803,550
Number of Sequences: 62578
Number of extensions: 799406
Number of successful extensions: 1702
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 38
length of query: 631
length of database: 14,973,337
effective HSP length: 105
effective length of query: 526
effective length of database: 8,402,647
effective search space: 4419792322
effective search space used: 4419792322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)