Query 038523
Match_columns 631
No_of_seqs 231 out of 1659
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:56:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15098 beta-D-glucoside gluc 100.0 3E-117 7E-122 1020.3 54.0 555 36-631 32-654 (765)
2 PLN03080 Probable beta-xylosid 100.0 6E-112 1E-116 973.3 49.1 538 26-631 37-639 (779)
3 COG1472 BglX Beta-glucosidase- 100.0 6.4E-75 1.4E-79 619.5 30.9 366 49-460 1-375 (397)
4 PF00933 Glyco_hydro_3: Glycos 100.0 2.1E-71 4.6E-76 578.4 22.4 295 50-378 1-299 (299)
5 PRK05337 beta-hexosaminidase; 100.0 4.8E-61 1E-65 503.5 26.1 281 65-382 15-309 (337)
6 PF01915 Glyco_hydro_3_C: Glyc 100.0 1.6E-36 3.5E-41 304.5 10.8 201 415-627 1-227 (227)
7 PF05690 ThiG: Thiazole biosyn 77.0 7.5 0.00016 38.8 6.8 91 260-363 133-229 (247)
8 COG0486 ThdF Predicted GTPase 75.1 88 0.0019 34.6 14.9 102 267-388 60-178 (454)
9 CHL00162 thiG thiamin biosynth 72.6 15 0.00033 37.2 7.7 91 260-363 147-243 (267)
10 COG2022 ThiG Uncharacterized e 59.3 32 0.00068 34.4 6.9 88 263-363 143-236 (262)
11 PRK11840 bifunctional sulfur c 58.3 36 0.00078 35.9 7.6 87 263-363 210-303 (326)
12 cd00938 HisRS_RNA HisRS_RNA bi 57.1 26 0.00057 25.6 4.4 31 353-383 12-42 (45)
13 PRK11548 outer membrane biogen 53.3 22 0.00049 31.4 4.5 55 1-55 1-56 (113)
14 PF13653 GDPD_2: Glycerophosph 51.3 13 0.00029 24.7 2.0 18 263-280 12-29 (30)
15 cd04728 ThiG Thiazole synthase 45.2 78 0.0017 32.1 7.3 85 264-363 137-229 (248)
16 PRK10415 tRNA-dihydrouridine s 39.0 4.9E+02 0.011 27.4 15.1 62 139-206 69-132 (321)
17 PRK00208 thiG thiazole synthas 38.6 1.3E+02 0.0029 30.5 7.8 85 264-363 137-229 (250)
18 PF09851 SHOCT: Short C-termin 38.5 81 0.0018 21.0 4.3 27 350-376 4-30 (31)
19 PF09373 PMBR: Pseudomurein-bi 37.2 61 0.0013 21.9 3.6 26 360-385 2-27 (33)
20 PRK13533 7-cyano-7-deazaguanin 35.4 77 0.0017 35.6 6.2 71 269-343 49-121 (487)
21 PRK01008 queuine tRNA-ribosylt 34.0 54 0.0012 35.4 4.5 18 298-315 76-93 (372)
22 PRK05848 nicotinate-nucleotide 27.8 1.7E+02 0.0038 30.2 6.9 37 297-345 174-210 (273)
23 cd02940 DHPD_FMN Dihydropyrimi 25.7 5E+02 0.011 26.9 10.1 50 145-201 110-161 (299)
24 PRK12277 50S ribosomal protein 24.3 34 0.00075 28.3 0.8 23 159-181 37-59 (83)
25 TIGR00737 nifR3_yhdG putative 22.2 9.1E+02 0.02 25.2 15.6 51 328-378 205-263 (319)
26 COG2003 RadC DNA repair protei 22.1 77 0.0017 31.6 2.9 53 263-315 157-210 (224)
27 PRK13534 7-cyano-7-deazaguanin 22.1 1.7E+02 0.0036 34.2 6.1 73 269-343 46-120 (639)
28 cd06533 Glyco_transf_WecG_TagA 21.8 2.7E+02 0.0059 26.3 6.6 43 498-556 95-137 (171)
29 PF08756 YfkB: YfkB-like domai 21.6 1.3E+02 0.0027 27.7 3.8 58 362-424 12-72 (153)
30 PRK11251 DNA-binding transcrip 21.5 1E+02 0.0022 27.2 3.2 44 4-55 3-46 (109)
31 PLN03007 UDP-glucosyltransfera 21.5 1.9E+02 0.0041 32.5 6.2 70 304-376 344-438 (482)
32 PF08044 DUF1707: Domain of un 21.4 1.6E+02 0.0036 22.2 3.9 34 348-381 9-42 (53)
33 TIGR01305 GMP_reduct_1 guanosi 21.2 1.5E+02 0.0033 31.5 5.0 69 264-344 164-241 (343)
34 COG2511 GatE Archaeal Glu-tRNA 21.0 1.3E+02 0.0027 33.9 4.4 22 144-165 194-215 (631)
35 PRK00112 tgt queuine tRNA-ribo 20.2 1.7E+02 0.0038 31.5 5.4 18 298-315 78-95 (366)
36 KOG3333 Mitochondrial/chloropl 20.0 89 0.0019 29.0 2.6 47 122-168 79-125 (188)
No 1
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=3.4e-117 Score=1020.29 Aligned_cols=555 Identities=32% Similarity=0.560 Sum_probs=472.7
Q ss_pred CCHHHHHHHHHhhCCHHHHHhcccccccch-----hhHHHHHhcCcceEeeCCCCCCCCCCCHHHHHHHHHHHHhhhc-c
Q 038523 36 QPLSKRIRDLMNRMTLEEKIGQMVQLDRAA-----ATAEIMRDYSIGSLLSGGGSVPRLQATPQEWIDMVNDFQKGSL-S 109 (631)
Q Consensus 36 ~~~~~rv~~ll~~mtleeKigQl~~~~~~~-----~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~-~ 109 (631)
.+.++|+++++++||+|||||||+++.+.. ...+.|+++++|||+. ..+++++ +.+|+.+. .
T Consensus 32 ~~~~~~v~~ll~~MtleEKvgQl~~~~~~~~~~~~~~~~~i~~~~vGgv~n--------~~~~~~~----~~lq~~~~~~ 99 (765)
T PRK15098 32 EARDAFVTDLLKKMTLDEKIGQLRLISVGPDNPKEAIREMIKAGQVGAIFN--------TVTRQDI----RAMQDQVMQL 99 (765)
T ss_pred cCHHHHHHHHHHcCCHHHHHhhhcccccCCCCchHHHHHHHHhCCcceEEc--------CcCHHHH----HHHHHHHhhC
Confidence 478999999999999999999999875433 2356789999999972 2244444 45666554 4
Q ss_pred CCCCCCcEEeecCCCCcccCCCccCCCccccccCCCCHHHHHHHHHHHHHHHHHcCCCeeeecccccccCCCCCcccccc
Q 038523 110 SRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRDPDLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFESY 189 (631)
Q Consensus 110 ~~lgiP~~~~~D~egG~~~~~~~t~fP~~~~l~at~d~~la~~~g~~~g~el~a~Gin~~~aPvvDv~~~p~~gr~~rsf 189 (631)
++++||+++++|+|||. .|.||+++++|||||+++++++|+++|+|+|++|||++||||+||+|||+|||++|||
T Consensus 100 ~~~giP~li~~D~e~G~-----~t~fP~~~~laat~d~~l~~~~g~~~a~E~ra~Gin~~laPv~Dv~r~p~~gr~~rsf 174 (765)
T PRK15098 100 SRLKIPLFFAYDVVHGQ-----RTVFPISLGLASSWDLDAVATVGRVSAYEAADDGLNMTWAPMVDISRDPRWGRASEGF 174 (765)
T ss_pred CCCCCCeeEEEeCCCCc-----cccCChHHHHHHcCCHHHHHHHHHHHHHHHHHcCCCEEeeCcccccCCCCccccccCc
Confidence 78899999999999996 4789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHh-hhccccCCCCCCCCCCCcccCCCCceeEeecccccCCCCCCCCCCCCcccCHhHHHhhccHHHHHHH
Q 038523 190 SEDPKIVKLMTE-IIPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAI 268 (631)
Q Consensus 190 geDp~lv~~~a~-~v~G~q~~~~~~~~~g~~~~~g~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i 268 (631)
||||++|++|+. ||+|+|+.+.. +..||++|+|||||||.++.++|.....+++++|++.||+||+++|
T Consensus 175 geDP~lv~~~~~a~v~GlQ~~~~~----------~~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~e~~l~PF~~ai 244 (765)
T PRK15098 175 GEDTYLTSIMGKTMVKAMQGKSPA----------DRYSVMTSVKHFALYGAVEGGRDYNTVDMSPQRMFNDYLPPYKAGL 244 (765)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCC----------CCCCEEEECcEEeCCCCcccCccCccCcCCHHHHHHHHHHHHHHHH
Confidence 999999999998 99999963210 0358999999999999988888877777899999999999999999
Q ss_pred HhCCceEEEeccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCC-CCChHHHHHHHHHcCCceecCCCCh
Q 038523 269 IKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPE-HANYSYSVLAGVNAGIDMFMLPFNH 347 (631)
Q Consensus 269 ~ag~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~-~~~~~~~~~~al~AG~D~~l~~~~~ 347 (631)
++|+.+|||||+.+||.|+|+|+++|+++||+||||+|+|||||++|.++..++ ..+..+++++|++||+||+|.+..
T Consensus 245 ~ag~~~VM~sy~~~~g~pa~~s~~ll~~lLR~e~GF~G~VvSD~~a~~~l~~~~~~~~~~ea~~~Al~AG~Dl~m~~~~- 323 (765)
T PRK15098 245 DAGSGGVMVALNSLNGTPATSDSWLLKDLLRDQWGFKGITVSDHGAIKELIKHGVAADPEDAVRLALKSGIDMSMSDEY- 323 (765)
T ss_pred HhCCCEEEecccCcCCEeccCCHHHHHHHHHHhcCCCcEEEecchhHHHHHhcccCCCHHHHHHHHHHcCCCcccCchh-
Confidence 999999999999999999999999999999999999999999999999886421 124578899999999999986432
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCchh------hhhhcCChHHHHHHHHHHHhhhhhhccC
Q 038523 348 TDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQT------FIDQLGSQAHRDLAREAVRKSLVLLKNG 421 (631)
Q Consensus 348 ~~~~~~l~~av~~g~i~~~~ld~av~Ril~~k~~~Gl~~~p~~~~~------~~~~~~~~~~~~~a~~~a~~sivLLKN~ 421 (631)
+.+.|.++|++|.+++++||+||+|||++|+++|+|++|+.+.. ....+.+++|+++++++|++|||||||
T Consensus 324 --~~~~l~~av~~G~i~~~~id~av~RIL~~k~~~glf~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN- 400 (765)
T PRK15098 324 --YSKYLPGLVKSGKVTMAELDDAVRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKN- 400 (765)
T ss_pred --HHHHHHHHHHcCcCCHHHHHHHHHHHHHHHHHhCCCCCCccccccccccccccccCCHHHHHHHHHHHHhcEEEEec-
Confidence 33568999999999999999999999999999999999986431 112346789999999999999999999
Q ss_pred CCCCCCccCCCCCCceEEEEccCCCccccccCCceeecccCCCCCCCccCCHHHHHHhccCCCceEEEcCCCc-------
Q 038523 422 ENADGAALPLPKNAARILVAGTHANNLGYQCGGWTIAWQGLSGNNNTVGTTILNGISATVDSDTEIIFSENPS------- 494 (631)
Q Consensus 422 ~~~~~~~LPL~~~~~ki~vig~~a~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~------- 494 (631)
++++|||+++ +||+||||+++....++|+|+.. +. .....|++++|++.+.....+.|..+.+
T Consensus 401 ---~~~~LPL~~~-~~IaviG~~a~~~~~~~G~~s~~-----~~-~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~ 470 (765)
T PRK15098 401 ---RLETLPLKKS-GTIAVVGPLADSQRDVMGSWSAA-----GV-ADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGI 470 (765)
T ss_pred ---CCCCCCCCCC-CEEEEECCCcccccccCCCcccc-----Cc-cCCCCCHHHHHHHhhcCCceEEEecccccccCccc
Confidence 7789999865 79999999998876678887532 11 2356799999998775444565543321
Q ss_pred ------------------H-----HHHHhcCCCeEEEEEeCCCCCcccC-CCCcccCCCCcHHHHHHHhc-CCCeEEEEE
Q 038523 495 ------------------M-----DYVKASNVSYAIVVVGEQPYAETQG-DSLNLTISEPGPSTITNVCA-AVKCVVVLV 549 (631)
Q Consensus 495 ------------------~-----~~~~~~~~d~~iv~vg~~~~~~~~g-d~~~l~lp~~q~~li~~v~~-~~~~VvV~~ 549 (631)
. ....++.+|++||++|.....+.++ ||.++.||..|.+||+++++ ++|+|||++
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVvVl~ 550 (765)
T PRK15098 471 IDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLM 550 (765)
T ss_pred chhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHhCcCEEEEEe
Confidence 0 1123578999999999887666665 99999999999999999987 889999999
Q ss_pred CCCccccCCCCCCcceEEEccCCChh-hHHHHHHhccCCCCCCcccccccccCCCCCCCC-----------------CCC
Q 038523 550 SGRPVTVGPYLPQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTWFKTVDQLPMNF-----------------GDE 611 (631)
Q Consensus 550 ~g~P~~l~~~~~~v~Ail~a~~~g~~-g~a~advL~G~~nPsGkLPvt~p~~~~~~p~~~-----------------g~~ 611 (631)
+|+||+|.++.++++|||++|+||++ |+|+||||||++|||||||+|||++.+++|.++ +||
T Consensus 551 ~g~P~~l~~~~~~v~AiL~a~~pG~e~G~AiAdvLfG~~nPsGkLPvT~p~~~~~~P~~~~~~~~~~~y~e~~~~~y~yr 630 (765)
T PRK15098 551 NGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYNHLNTGRPYNPDKPNKYTSR 630 (765)
T ss_pred CCceeeccchhhcCCeEEeecCCchhhhHHHHHHHcCCCCCCCCCccceeCCCCcCccccccCCCCCccccCcccccccc
Confidence 99999994333599999999999999 999999999999999999999999999998643 346
Q ss_pred CC----CccccCCCCCCCCCCCCC
Q 038523 612 QY----DPLFPLGFGLTTEPVGSS 631 (631)
Q Consensus 612 ~~----~plfpFG~GLSYt~~~~~ 631 (631)
|| +|+||||||||||+|.-|
T Consensus 631 y~d~~~~plypFG~GLSYT~F~ys 654 (765)
T PRK15098 631 YFDEANGPLYPFGYGLSYTTFTVS 654 (765)
T ss_pred eeccCCCccccccCCCCCccEEee
Confidence 66 599999999999999743
No 2
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=5.6e-112 Score=973.28 Aligned_cols=538 Identities=29% Similarity=0.469 Sum_probs=448.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhCCHHHHHhcccccccchhhHHHHHhcCcceEeeCCCCCCCCCCCHHHHHHHHHHHHh
Q 038523 26 PGYMKFRDPQQPLSKRIRDLMNRMTLEEKIGQMVQLDRAAATAEIMRDYSIGSLLSGGGSVPRLQATPQEWIDMVNDFQK 105 (631)
Q Consensus 26 ~~~~~~~~~~~~~~~rv~~ll~~mtleeKigQl~~~~~~~~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~ 105 (631)
....||||+.++.++|+++|+++||+|||++||...
T Consensus 37 ~~~~~~~~~~~~~~~r~~~Ll~~mTleEKv~~l~~~-------------------------------------------- 72 (779)
T PLN03080 37 FSAYPFCNASLPIPARARSLVSLLTLDEKIAQLSNT-------------------------------------------- 72 (779)
T ss_pred ccCCCccCCCCCHHHHHHHHHHhcCHHHHHHHhcCC--------------------------------------------
Confidence 345899999999999999999999999999998420
Q ss_pred hhccCCCCCCcE-EeecCCCCcccC-----------CCccCCCccccccCCCCHHHHHHHHHHHHHHHHHc------CCC
Q 038523 106 GSLSSRLGIPMI-YGIDAVHGHNNV-----------YKATIFPHNVGLGATRDPDLVRRIGAATALEVRAT------GIN 167 (631)
Q Consensus 106 ~~~~~~lgiP~~-~~~D~egG~~~~-----------~~~t~fP~~~~l~at~d~~la~~~g~~~g~el~a~------Gin 167 (631)
....+|+|||.+ ++.|+.||+... .++|.||+++++|||||+++++++|+++|+|+|++ |++
T Consensus 73 ~~~vpRlGIP~~~~~~d~~hGv~~~~~g~~~~~g~~~~aT~FP~~i~laAt~d~~L~~~~g~~ig~E~ra~g~~~~~G~~ 152 (779)
T PLN03080 73 AAGVPRLGIPPYEWWSESLHGLADNGPGVSFNSGPVSAATSFPQVILSAASFNRSLWRAIGSAIAVEARAMYNAGQAGLT 152 (779)
T ss_pred CCCCCcCCCCccceecccccccccCCCccccccCCCCCceECchHHhhhhcCCHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 012468899999 999999998521 24699999999999999999999999999999998 677
Q ss_pred eeeecccccccCCCCCccccccCCCHHHHHHHHh-hhccccCCCCCCCCCCCcccCCCCceeEeecccccCCCCCC---C
Q 038523 168 YAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMTE-IIPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTR---G 243 (631)
Q Consensus 168 ~~~aPvvDv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~q~~~~~~~~~g~~~~~g~~gV~a~~KHFpG~g~~~~---~ 243 (631)
+ |+|++||+|||+|||++|||||||+++++|+. ||+|+|+.+.++..... -.|..+|++|+||||||+.... +
T Consensus 153 ~-~aP~vdi~rdPrwGR~~EtfGEDP~lv~~~a~a~V~GlQ~~~~~~~~~~~--~~~~~~V~a~~KHF~g~~~e~~~~~~ 229 (779)
T PLN03080 153 F-WAPNINIFRDPRWGRGQETPGEDPAVASAYSVEFVKGFQGGKWKKVRDDG--EDGKLMLSACCKHYTAYDLEKWGNFS 229 (779)
T ss_pred e-eecccccccCCCcCccccCcCCCHHHHHHHHHHHHHHhcCCCcccccccc--cCCCceEEEECCeeeCCCccccCCcc
Confidence 4 99999999999999999999999999999998 99999963210000000 0001259999999999998753 3
Q ss_pred CCCCCcccCHhHHHhhccHHHHHHHHhC-CceEEEeccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCC
Q 038523 244 INENNTVIDRHGLMSIHMPAYNDAIIKG-VSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPE 322 (631)
Q Consensus 244 ~~~~~~~~~~~~l~~~~l~pF~~~i~ag-~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~ 322 (631)
++..+..+++++|+|.||+||+++|++| +.+||||||.+||+|+|.|+++|+. ||+||||+|+|||||++|..+...+
T Consensus 230 r~~~~~~v~~~~L~e~yl~PF~~ai~~g~~~~VM~sYn~vnG~Pa~~s~~lL~~-LR~ewGF~G~VvSD~~a~~~~~~~~ 308 (779)
T PLN03080 230 RYTFNAVVTEQDMEDTYQPPFKSCIQEGKASCLMCSYNQVNGVPACARKDLLQK-ARDEWGFQGYITSDCDAVATIFEYQ 308 (779)
T ss_pred ccCccCccCHHHHHhhhhHHHHHHHHhcCCeEEEeCCcCcCCccccCCHHHHHH-HHHHhCcCCeEecchHHHHHhhhcc
Confidence 4455667899999999999999999987 6799999999999999999999986 9999999999999999999887644
Q ss_pred C--CChHHHHHHHHHcCCceecCCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCchh----hhh
Q 038523 323 H--ANYSYSVLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQT----FID 396 (631)
Q Consensus 323 ~--~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~av~Ril~~k~~~Gl~~~p~~~~~----~~~ 396 (631)
+ .+.++++++||+||+||+|.. .+.+.|.+||++|++++++||+||+|||++|+++|+|++|+.... ...
T Consensus 309 ~~~~~~~ea~~~Al~AG~Dl~~~~----~~~~~l~~av~~G~i~e~~ID~av~RiL~~k~rlGlfd~~~~~~~~~~~~~~ 384 (779)
T PLN03080 309 TYTKSPEDAVADVLKAGMDINCGS----YMLRHTQSAIEKGKVQEEDIDRALFNLFSVQLRLGLFDGDPRNGWYGKLGPN 384 (779)
T ss_pred cccCCHHHHHHHHHHcCCCcccCc----hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcCCCccccccccccc
Confidence 3 245678899999999999743 245689999999999999999999999999999999997653221 124
Q ss_pred hcCChHHHHHHHHHHHhhhhhhccCCCCCCCccCCCCC-CceEEEEccCCCccccccCCceeecccCCCCCCCccCCHHH
Q 038523 397 QLGSQAHRDLAREAVRKSLVLLKNGENADGAALPLPKN-AARILVAGTHANNLGYQCGGWTIAWQGLSGNNNTVGTTILN 475 (631)
Q Consensus 397 ~~~~~~~~~~a~~~a~~sivLLKN~~~~~~~~LPL~~~-~~ki~vig~~a~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~ 475 (631)
.+++++|+++|+|+|++||||||| ++++|||+++ .+||+||||+|+....++|+|+ +. .....|+++
T Consensus 385 ~v~~~~h~~lA~eaA~~siVLLKN----~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~-------~~-~~~~~t~~~ 452 (779)
T PLN03080 385 NVCTKEHRELALEAARQGIVLLKN----DKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYT-------GV-PCQPTTLFK 452 (779)
T ss_pred ccCCHHHHHHHHHHHHhCEEEEec----CCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCC-------CC-CCCCCCHHH
Confidence 678999999999999999999999 7789999864 3799999999998877777664 11 134578999
Q ss_pred HHHhccCCCceEEEcCCCc-----------HHHHHhcCCCeEEEEEeCCCCCcccC-CCCcccCCCCcHHHHHHHhc-C-
Q 038523 476 GISATVDSDTEIIFSENPS-----------MDYVKASNVSYAIVVVGEQPYAETQG-DSLNLTISEPGPSTITNVCA-A- 541 (631)
Q Consensus 476 ~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~iv~vg~~~~~~~~g-d~~~l~lp~~q~~li~~v~~-~- 541 (631)
+|++++. .+.|..+.+ .....++.+|++||++|.+...+.|+ ||.+|.||..|.+||++|++ +
T Consensus 453 gl~~~~~---~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~va~~~~ 529 (779)
T PLN03080 453 GLQAYVK---KTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISSVASVSK 529 (779)
T ss_pred HHHHHhh---cceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHHHHhhcC
Confidence 9998753 233443321 11233568999999999887776665 99999999999999999997 4
Q ss_pred CCeEEEEECCCccccCCCCC---CcceEEEccCCChh-hHHHHHHhccCCCCCCcccccc-cccCCCCCCC-C-------
Q 038523 542 VKCVVVLVSGRPVTVGPYLP---QVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTW-FKTVDQLPMN-F------- 608 (631)
Q Consensus 542 ~~~VvV~~~g~P~~l~~~~~---~v~Ail~a~~~g~~-g~a~advL~G~~nPsGkLPvt~-p~~~~~~p~~-~------- 608 (631)
+|+|||+++|+|+++ +|.+ +++|||++||||++ |+|+||||||++|||||||+|| |++..++|++ +
T Consensus 530 ~pvIvVl~~g~Pv~l-~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~~~~P~~~~~~~~~~~ 608 (779)
T PLN03080 530 KPVVLVLTGGGPVDV-SFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESFTAVPMTDMNMRADPS 608 (779)
T ss_pred CCEEEEEeCCceeec-cchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeecccccccCCccccCcccccc
Confidence 478999999999999 5643 79999999999999 9999999999999999999999 8888899975 2
Q ss_pred ------CCCCC--CccccCCCCCCCCCCCCC
Q 038523 609 ------GDEQY--DPLFPLGFGLTTEPVGSS 631 (631)
Q Consensus 609 ------g~~~~--~plfpFG~GLSYt~~~~~ 631 (631)
+|||| +|+||||||||||+|.-|
T Consensus 609 ~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys 639 (779)
T PLN03080 609 RGYPGRTYRFYTGDVVYGFGYGLSYTKFSYK 639 (779)
T ss_pred cCCCCCCceeCCCCcceeccCCCccceeEec
Confidence 27887 599999999999999743
No 3
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-75 Score=619.47 Aligned_cols=366 Identities=39% Similarity=0.612 Sum_probs=319.9
Q ss_pred CCHHHHHhcccccccch--hhHHHHHhcCcceEeeCCCCCCCCCCCHHHHHHHHHHHHhhhccCCCCCCcEEeecCCCCc
Q 038523 49 MTLEEKIGQMVQLDRAA--ATAEIMRDYSIGSLLSGGGSVPRLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHGH 126 (631)
Q Consensus 49 mtleeKigQl~~~~~~~--~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~lgiP~~~~~D~egG~ 126 (631)
||++||++||.+.+... +......+.++||++++. +|..+.+|+..++..++. .|++||+++++|+|||.
T Consensus 1 m~~~~k~~ql~~~g~~~~~e~~~~~~~~~~~g~il~~----~n~~~~~~~~~~~~~~~~----~r~~iplli~~D~egG~ 72 (397)
T COG1472 1 MTLEEKVGQLGIAGLELTPEEAARLADPLVGGIILFG----RNIDDREQLRALVAAIRE----ARLGIPLLIAIDQEGGR 72 (397)
T ss_pred CCccccceeeeccCccCCHHHHhhhhccCcceeEeec----cCccchHHHHHHHHHHhh----hccCCCeEEEEecCCCe
Confidence 89999999999886532 233344556799998874 455677777777766664 36799999999999999
Q ss_pred ccCCC--ccCCCccccccCCCCHHHHHHHHHHHHHHHHHcCCCeeeecccccccCCCCCc-cccccCCCHHHHHHHHh-h
Q 038523 127 NNVYK--ATIFPHNVGLGATRDPDLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGR-CFESYSEDPKIVKLMTE-I 202 (631)
Q Consensus 127 ~~~~~--~t~fP~~~~l~at~d~~la~~~g~~~g~el~a~Gin~~~aPvvDv~~~p~~gr-~~rsfgeDp~lv~~~a~-~ 202 (631)
++|.. +|.||+++++|++||+++++++|+.+|+|+|++|||++||||+||.|||+||| +.|+|||||++|+.|+. |
T Consensus 73 v~r~~~~~t~fP~~~alaa~~~~~la~~~g~~~A~Elra~Gin~~fAPvlDv~~~p~~~ri~ersfgeDP~lv~~l~~a~ 152 (397)
T COG1472 73 VQRLREGFTVFPAALALAATWDPELARKVGRVIAKELRALGINLDFAPVLDVARDPRWGRIGERSFGEDPELVALLAAAF 152 (397)
T ss_pred eeeccCCCCcCChhhhhhhcCCHHHHHHHHHHHHHHHHHcCCCccccceeecccCCCcCccccccCCCCHHHHHHHHHHH
Confidence 98754 79999999999999999999999999999999999999999999999999999 55559999999999998 9
Q ss_pred hccccCCCCCCCCCCCcccCCCCceeEeecccccCCCCCCCCCCCCcccCHhHHHhhccHHHHHHHHhC---CceEEEec
Q 038523 203 IPGLQGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAIIKG---VSTVMVSY 279 (631)
Q Consensus 203 v~G~q~~~~~~~~~g~~~~~g~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i~ag---~~~vM~s~ 279 (631)
|+||| ..||++|+|||||||.++.|+|..+..++.+.|++.++.||+.++++| +.++|++|
T Consensus 153 i~Glq----------------~~gv~at~KHFpGhG~~~~dsh~~~~~v~~~~L~e~~~~~f~~~~~~~~~~~mtahv~y 216 (397)
T COG1472 153 IKGLQ----------------GAGVAATIKHFPGHGAVEGDSHYGLLPIDPRALRELYLPPFQPAIALGDDAAMTAHVAY 216 (397)
T ss_pred HHHHh----------------hCCceeeeccccCCCCCcCCcccccCCCChHHHHHhhccchHHHHHhccccceEEeeec
Confidence 99999 479999999999999999999988777899999999999999999999 78889999
Q ss_pred cccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCceecCCCChHHHHHHHHHHHH
Q 038523 280 SSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLPFNHTDFIDILTDFVE 359 (631)
Q Consensus 280 ~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~ 359 (631)
+.+|+.|+|+|+++|+++||++|||+|+|||||++|.++...++. ..+.+..+++|||||+|.|.+.......+..++
T Consensus 217 ~~id~~Pat~s~~ll~diLR~~~GF~G~ViSD~~~m~~~~~~~g~-~~d~~~~al~AG~Di~l~~~~~~~~~~~~~~~~- 294 (397)
T COG1472 217 PKIDGTPATLSRKLLTDILRDEWGFDGVVISDDLSMKAIAAAHGS-AADRAEAALKAGVDIVLVCNELYEAYLVVLELV- 294 (397)
T ss_pred cCCCCCcccCCHHHHHHHHHhccCCCeEEEeecchhHHHHHhccC-HHHHHHHHHhcCCCEEecCCchhHHHHHHHHhc-
Confidence 999999999999999999999999999999999999987765442 356677799999999999987554443444333
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhhhcCChHHHHHHHHHHHhhhhhhccCCCCCCCccCCCCCCceEE
Q 038523 360 RKIVPMSRIDDAVRRILRVKFTMGLFEKPMADQTFIDQLGSQAHRDLAREAVRKSLVLLKNGENADGAALPLPKNAARIL 439 (631)
Q Consensus 360 ~g~i~~~~ld~av~Ril~~k~~~Gl~~~p~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~~~~~~~LPL~~~~~ki~ 439 (631)
+ +++++++++++|||++|+++|+|++|+.+ +|++++++++++|+||||| +..+||++++.++|+
T Consensus 295 -~-~~~~~i~~~v~Ril~~k~~~~~f~~~~~~----------~~~~~a~~~~~~~~~ll~n----~~~~~p~~~~~~~i~ 358 (397)
T COG1472 295 -G-LSEARLDDAVRRILRVKFKLGLFENPYSS----------EHRALAREAARESIVLLKN----DGGLLPLKKSAKRIA 358 (397)
T ss_pred -C-CcHHHHHHHHHHHHHHHHHhccccCCCch----------hhHHHHHHHHHHHHHHHHh----ccCCCccccccCceE
Confidence 3 99999999999999999999999999876 7999999999999999999 678999995456999
Q ss_pred EEccCCCccccccCCceeecc
Q 038523 440 VAGTHANNLGYQCGGWTIAWQ 460 (631)
Q Consensus 440 vig~~a~~~~~~~g~~~~~~~ 460 (631)
|+||++++. . |+|+ .+.
T Consensus 359 v~g~~~~~~-~--g~~~-~~~ 375 (397)
T COG1472 359 VIGPYADDG-D--GGWS-VGG 375 (397)
T ss_pred EEccccccC-C--CCee-ecc
Confidence 999999987 4 8887 543
No 4
>PF00933 Glyco_hydro_3: Glycosyl hydrolase family 3 N terminal domain; InterPro: IPR001764 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase (3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often N-terminal to the glycoside hydrolase family 3, C-terminal domain IPR002772 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1Y65_A 2OXN_A 3GS6_A 1TR9_A 3GSM_A 3UT0_B 3RRX_A 3USZ_A 2X42_A 2X40_A ....
Probab=100.00 E-value=2.1e-71 Score=578.41 Aligned_cols=295 Identities=36% Similarity=0.584 Sum_probs=252.5
Q ss_pred CHHHHHhcccccccchhhHHHHHhcCcceEeeCCCCCCCCCCCHHHHHHHHHHHHhhhccCCCCCCcEEeecCCCCcccC
Q 038523 50 TLEEKIGQMVQLDRAAATAEIMRDYSIGSLLSGGGSVPRLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHGHNNV 129 (631)
Q Consensus 50 tleeKigQl~~~~~~~~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~lgiP~~~~~D~egG~~~~ 129 (631)
|||||||||++ ...+.++++++|||++ ++++..+.+.+|.....+++++|+++++|+|||.+.+
T Consensus 1 TleeKigQl~~-----~~~~~i~~~~vGgv~~-----------~~~~~~~~~~~~~~~~~~~~~iP~~i~~D~egG~~~~ 64 (299)
T PF00933_consen 1 TLEEKIGQLFM-----ELKELIKEYHVGGVIL-----------PEQLKQLTQSLQAISEQSRLGIPLLIAIDQEGGIVQR 64 (299)
T ss_dssp -HHHHHHHTEE-----HHHHHHHHHTCSEEEE-----------HHHHHHHHHHHHHHHCCGCGTCT-EEEEEETTSTTTS
T ss_pred CHHHHHHHHHH-----HHHHHHhcCCccEEEc-----------HHHHHHHHHHHHHHhhccccCCCeEEEEcCCCceEec
Confidence 89999999998 6678899999999997 6788888888888887789999999999999999987
Q ss_pred CC--ccCCCccccccCCCCHHHHHHHHHHHHHHHHHcCCCeeeecccccccCCCCCccccccCCCHHHHHHHHh-hhccc
Q 038523 130 YK--ATIFPHNVGLGATRDPDLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMTE-IIPGL 206 (631)
Q Consensus 130 ~~--~t~fP~~~~l~at~d~~la~~~g~~~g~el~a~Gin~~~aPvvDv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~ 206 (631)
.+ +|.||+++++|+|||+++++++|+.+|+|++++|||++||||+||.++|+|||+.|||||||++|++|+. ||+|+
T Consensus 65 ~~~~~t~~P~~~~l~at~d~~~a~~~g~~~a~el~~~Gin~~~aPv~Dv~~~p~~~~~~rsfgeDp~~v~~~~~a~v~G~ 144 (299)
T PF00933_consen 65 LGGGFTAFPSPMALAATWDPELAYEVGRIIARELRALGINVNFAPVVDVNRNPRWGRGERSFGEDPDLVAEMARAFVRGL 144 (299)
T ss_dssp TTTTS---S-HHHHHHHTCHHHHHHHHHHHHHHHHHTT-SEEEEEB----SSTTSTTGGGSS-SSHHHHHHHHHHHHHHH
T ss_pred CCCcCccCcchhhhhhhccchHHHHHHHHHHHHHHHhhhccccccceeeeeeccccccccccchhHHHHHHHHHHHhccc
Confidence 65 4999999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred cCCCCCCCCCCCcccCCCCceeEeecccccCCCCCCCCCCCCcccCHhHHHhhccHHHHHHH-HhCCceEEEeccccCCc
Q 038523 207 QGDIPSDLPKGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVIDRHGLMSIHMPAYNDAI-IKGVSTVMVSYSSWNGL 285 (631)
Q Consensus 207 q~~~~~~~~~g~~~~~g~~gV~a~~KHFpG~g~~~~~~~~~~~~~~~~~l~~~~l~pF~~~i-~ag~~~vM~s~~~~~g~ 285 (631)
| ++||++|+||||||+..+.+.+.....++.++|++.||+||+.+| ++|+.+||+||+.+|+.
T Consensus 145 q----------------~~gv~~~~KHFpG~~~~d~~~~~~~~~~~~~~l~~~~l~pF~~~i~~ag~~~VM~sy~~id~~ 208 (299)
T PF00933_consen 145 Q----------------GAGVAATAKHFPGHGAQDSHRDLPSVDVSERELREIDLPPFRAAIKDAGADAVMTSYPAIDGT 208 (299)
T ss_dssp H----------------CTTSEEEEEEETTGGCSCTTTTTEEEE--HHHHHHTTSHHHHHHHHHTT-SEEEE-STCCTTE
T ss_pred c----------------cccccccccccccccccccccccceecCCcccccchhcccchhcccccccceeeeeccccCCc
Confidence 9 579999999999995544433333344699999999999999999 88999999999999999
Q ss_pred cccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCceecCCCChHHHHHHHHHHHHcCCCCH
Q 038523 286 KMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPM 365 (631)
Q Consensus 286 pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~ 365 (631)
|+|+|+++++++||++|||+|+|||||+.|+++...++ ..+++++||+||+||+|+|.+....++.|.++|++|.+++
T Consensus 209 pas~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~--~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~ 286 (299)
T PF00933_consen 209 PASLSPKILTDLLRNELGFDGVVISDDLEMGALSSNYS--IEEAAVRALNAGCDMLLVCNDPDDDIDALVEAVESGRISE 286 (299)
T ss_dssp EGGG-HHHHCCCCCCCS---SEEEESTTTSHHHHCCTT--HHHHHHHHHHHT-SBEESSSSHHHHHHHHHHHHHTTSSGH
T ss_pred cchhhhccchhhCcCcccCCCeEecccchHHHHHhccc--cchHHHHHHhCccCeeCCCCchhHHHHHHHHHHHcCCCCH
Confidence 99999999999999999999999999999999987655 4788999999999999999988777899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 038523 366 SRIDDAVRRILRV 378 (631)
Q Consensus 366 ~~ld~av~Ril~~ 378 (631)
+|||+||+|||++
T Consensus 287 ~~ld~av~RIl~~ 299 (299)
T PF00933_consen 287 ERLDEAVRRILRL 299 (299)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 5
>PRK05337 beta-hexosaminidase; Provisional
Probab=100.00 E-value=4.8e-61 Score=503.53 Aligned_cols=281 Identities=21% Similarity=0.289 Sum_probs=247.3
Q ss_pred hhhHHHHHhcCcceEeeCCCCCCCCCCCHHHHHHHHHHHHhhhccCCCCCCcEEeecCCCCcccC--CCccCCCcccccc
Q 038523 65 AATAEIMRDYSIGSLLSGGGSVPRLQATPQEWIDMVNDFQKGSLSSRLGIPMIYGIDAVHGHNNV--YKATIFPHNVGLG 142 (631)
Q Consensus 65 ~~~~~~i~~~~iGgv~~~~~~~~~~~~~~~~~~~~~~~lq~~~~~~~lgiP~~~~~D~egG~~~~--~~~t~fP~~~~l~ 142 (631)
.+..+.|+++++||||+++ +|..+++|++++++++|+.. ++|++|++|||||.++| .++|.||+++++|
T Consensus 15 ~~~~~~i~~~~~gGvilf~----~n~~~~~q~~~l~~~l~~~~-----~~plli~iD~EgG~v~rl~~~~t~~P~~~~la 85 (337)
T PRK05337 15 AEERERLQHPLVGGVILFA----RNFEDPAQLRELTAAIRAAV-----RPPLLIAVDQEGGRVQRFREGFTRLPAMQSFG 85 (337)
T ss_pred HHHHHHHHccCceEEEEEC----CCCCCHHHHHHHHHHHHHhc-----CCCCEEEEecCCCEeeecCCCCCCCCCHHHHH
Confidence 3456789999999999995 56678999999999999765 79999999999999876 4679999999999
Q ss_pred CCCC------HHHHHHHHHHHHHHHHHcCCCeeeecccccccCCCCCccccccCCCHHHHHHHHh-hhccccCCCCCCCC
Q 038523 143 ATRD------PDLVRRIGAATALEVRATGINYAFAPCIAVCRDPRWGRCFESYSEDPKIVKLMTE-IIPGLQGDIPSDLP 215 (631)
Q Consensus 143 at~d------~~la~~~g~~~g~el~a~Gin~~~aPvvDv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~q~~~~~~~~ 215 (631)
++|| +++++++|+.+|+|+|++|||++|+||+||.+++.| ++.|||||||++|++|+. ||+|+|
T Consensus 86 at~d~~~~~~~~la~~~g~~~a~Elra~Gin~~~aPvlDv~~~~~~-ig~RsfgeDp~lv~~~a~a~i~Glq-------- 156 (337)
T PRK05337 86 ALWDRDPLEALKLAEEAGWLMAAELRACGIDLSFAPVLDLDGISAV-IGDRAFHRDPQVVAALASAFIDGMH-------- 156 (337)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHhCCCccccCccCCCCCCCe-eeccCCCCCHHHHHHHHHHHHHHHH--------
Confidence 9999 899999999999999999999999999999844333 458999999999999998 999999
Q ss_pred CCCcccCCCCceeEeecccccCCCCCCCCCCCCccc--CHhHHHhhccHHHHHHHHhCCceEEEe---ccccCCccccCC
Q 038523 216 KGIPYVAGRDKVAACAKHYVGDGGTTRGINENNTVI--DRHGLMSIHMPAYNDAIIKGVSTVMVS---YSSWNGLKMHAN 290 (631)
Q Consensus 216 ~g~~~~~g~~gV~a~~KHFpG~g~~~~~~~~~~~~~--~~~~l~~~~l~pF~~~i~ag~~~vM~s---~~~~~g~pa~~s 290 (631)
+.||++|+|||||||.+..|+|...+.. +.++|++.||+||+.+|++|+.+||+| |+.+|+.|+|+|
T Consensus 157 --------~~gv~~~~KHFpG~G~~~~dsh~~~~~~~~~~~el~~~~l~PF~~ai~~g~~~vM~aHv~y~~id~~Pa~~S 228 (337)
T PRK05337 157 --------AAGMAATGKHFPGHGAVEADSHVETPVDERPLEEIRAEDMAPFRALIAAGLDAVMPAHVIYPQVDPRPAGFS 228 (337)
T ss_pred --------HCCCEEEecccCCCCCCcCCCCCCCCCCCCCHHHHHhhhHHHHHHHHhcCCCEEEeCceeccCCCCCCCcCC
Confidence 5799999999999999999999877654 668999999999999999999999999 778889999999
Q ss_pred HHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCceecCCCChHHHHHHHHHHHHcCCCCHHHHHH
Q 038523 291 RDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLPFNHTDFIDILTDFVERKIVPMSRIDD 370 (631)
Q Consensus 291 ~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~l~~av~~g~i~~~~ld~ 370 (631)
+++|+++||+||||+|+|||||++|+++.... ++.+++++|++|||||+|+|++.+ ....+.+++.+ +.
T Consensus 229 ~~~l~~lLR~elGF~G~ViSD~l~m~a~~~~~--~~~~~~~~al~AG~Dl~l~~~~~~-~~~~~~~~l~~--------~~ 297 (337)
T PRK05337 229 RYWLQDILRQELGFDGVIFSDDLSMEGAAVAG--DYAERAQAALDAGCDMVLVCNNRD-GAVSVLDNLSP--------PI 297 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEecchhhhhhhhcC--CHHHHHHHHHHcCCCEEeeCCCHH-HHHHHHHHHHh--------hc
Confidence 99999999999999999999999998865422 456788999999999999998764 34566776654 67
Q ss_pred HHHHHHHHHHHc
Q 038523 371 AVRRILRVKFTM 382 (631)
Q Consensus 371 av~Ril~~k~~~ 382 (631)
+.+|+++++.+.
T Consensus 298 ~~~~~~~~~~~~ 309 (337)
T PRK05337 298 SAERLTRLYGRG 309 (337)
T ss_pred cHHHHHHHhccc
Confidence 788888888764
No 6
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=1.6e-36 Score=304.52 Aligned_cols=201 Identities=33% Similarity=0.554 Sum_probs=143.6
Q ss_pred hhhhccCCCCCCCccCCCCCCceEEEEccCCCccccccCCceeecccCCCCCCCccCCHHHHHHhccCCCceEEEcCC--
Q 038523 415 LVLLKNGENADGAALPLPKNAARILVAGTHANNLGYQCGGWTIAWQGLSGNNNTVGTTILNGISATVDSDTEIIFSEN-- 492 (631)
Q Consensus 415 ivLLKN~~~~~~~~LPL~~~~~ki~vig~~a~~~~~~~g~~~~~~~~~~g~~~~~~~t~~~~l~~~~~~~~~~~~~~~-- 492 (631)
|||||| ++++|||+++.+||+|+|++++....+++||+.. ......++++++++++...........
T Consensus 1 ivLLKN----~~~~LPL~~~~~~v~viG~~~~~~~~~g~g~~~~-------~~~~~~t~~~~l~~~~~~~~~~~~~~~~~ 69 (227)
T PF01915_consen 1 IVLLKN----EGNLLPLKPDKKKVAVIGPNADNPVAQGGGSGNV-------NPGYGVTPLDALKQRFGNAGVVVPEGGDA 69 (227)
T ss_dssp -EEEEE----GCG--SB-TTSTEEEEESTTTTSHHHCHBSTTSS-------TCSTHBHHHHHHHHHHHTTSEEEECCCCC
T ss_pred CEEEEe----CCCCCCCCCCCCEEEEEcCccccccccCCccccc-------CccccccHHhhhccccCCCceEEeeeccc
Confidence 799999 7889999986449999999999866666665322 123567899999988755443332211
Q ss_pred ----Cc--HHHHHhcCCCeEEEEEeCCCCCcc-------cCCCCcccCCCCcHHHHHHHhc-CCCeEEEEECCCccccCC
Q 038523 493 ----PS--MDYVKASNVSYAIVVVGEQPYAET-------QGDSLNLTISEPGPSTITNVCA-AVKCVVVLVSGRPVTVGP 558 (631)
Q Consensus 493 ----~~--~~~~~~~~~d~~iv~vg~~~~~~~-------~gd~~~l~lp~~q~~li~~v~~-~~~~VvV~~~g~P~~l~~ 558 (631)
.. .....++++|++||+++.. +.|. +.|+.++.+|..|.++|+++++ ++|+|||+++|+||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~aD~vIv~~~~~-~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~~~~Ivvv~~~~P~~l~~ 148 (227)
T PF01915_consen 70 VDDDEGIDEAVAAAKEADVVIVFVGRP-SGEGNDNNTEGESDRSDLALPANQQELIKAVAAAGKKVIVVVNSGNPYDLDP 148 (227)
T ss_dssp CCCCSCHHHHHHHHHCSSEEEEEEETT-SBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHHSCEEEEEE-SSGGCGHC
T ss_pred cccccchHHHHHHhhcCCEEEEecccc-ccccccccccccCCcccccchhhHHHHHHHHHHhcCCeEEEEecCCccccHH
Confidence 11 1223356899999999932 2222 2588899999999999999998 689999999999999988
Q ss_pred CCCCcceEEEccCCChh-hHHHHHHhccCCCCCCcccccccccCCCCCCCCCC----CCC-----CccccCCCCCCCCC
Q 038523 559 YLPQVDALVAAWLPGTE-GQGVADVLFGDYGFTGRLPRTWFKTVDQLPMNFGD----EQY-----DPLFPLGFGLTTEP 627 (631)
Q Consensus 559 ~~~~v~Ail~a~~~g~~-g~a~advL~G~~nPsGkLPvt~p~~~~~~p~~~g~----~~~-----~plfpFG~GLSYt~ 627 (631)
|.++++|||++|++|++ ++|+||||||++||+||||+|||++.+++|.++.| +.| .|+||||||||||+
T Consensus 149 ~~~~~~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~fG~GLsyt~ 227 (227)
T PF01915_consen 149 WEDNVDAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTIPKSMEDIPAYYNYGMYGRTYDYDSGPPLYPFGYGLSYTY 227 (227)
T ss_dssp CHHC-SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-BESSGGGTTTTTTTS-THCCHHHHTTSESB-TT--B-TT-
T ss_pred HHhhhceEeeccccchHHHHHHHHHHcCCCCCCCCcceeccCChhhCCCcccccccCcccccCCCCccCcCCCCCEeeC
Confidence 88899999999999999 89999999999999999999999999999986542 333 69999999999995
No 7
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=77.02 E-value=7.5 Score=38.84 Aligned_cols=91 Identities=13% Similarity=-0.029 Sum_probs=58.7
Q ss_pred ccHHHHHHHHhCCceEEEeccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCc
Q 038523 260 HMPAYNDAIIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGID 339 (631)
Q Consensus 260 ~l~pF~~~i~ag~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D 339 (631)
++.-.+++.+.|+.+||+--.-|..----.+++.| .++|++. +=-||-|.+- +. ..-+..|++-|+|
T Consensus 133 D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l-~~i~~~~--~vPvIvDAGi-G~---------pSdaa~AMElG~d 199 (247)
T PF05690_consen 133 DPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNL-RIIIERA--DVPVIVDAGI-GT---------PSDAAQAMELGAD 199 (247)
T ss_dssp -HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHH-HHHHHHG--SSSBEEES----S---------HHHHHHHHHTT-S
T ss_pred CHHHHHHHHHCCCCEEEecccccccCcCCCCHHHH-HHHHHhc--CCcEEEeCCC-CC---------HHHHHHHHHcCCc
Confidence 34567889999999999955444222233577777 5778887 5556667742 11 2236799999999
Q ss_pred eecCC------CChHHHHHHHHHHHHcCCC
Q 038523 340 MFMLP------FNHTDFIDILTDFVERKIV 363 (631)
Q Consensus 340 ~~l~~------~~~~~~~~~l~~av~~g~i 363 (631)
-+|+. .++..+.+++..||+.|++
T Consensus 200 aVLvNTAiA~A~dPv~MA~Af~~AV~AGR~ 229 (247)
T PF05690_consen 200 AVLVNTAIAKAKDPVAMARAFKLAVEAGRL 229 (247)
T ss_dssp EEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred eeehhhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 99973 4666677888888887754
No 8
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=75.11 E-value=88 Score=34.59 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHhCCceEEEeccccCCc-----cccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcC-Cce
Q 038523 267 AIIKGVSTVMVSYSSWNGL-----KMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAG-IDM 340 (631)
Q Consensus 267 ~i~ag~~~vM~s~~~~~g~-----pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG-~D~ 340 (631)
.|+.+...+|.+.+++.|+ .++-++.+++.+|+.=+... .-+. .+ | .+ ..+|+..| +|+
T Consensus 60 ~iDe~lvl~f~aP~SFTGEDvvEi~~HGg~~v~~~iL~~~l~~G-aR~A---------ep-G-EF---s~RAFLNgK~DL 124 (454)
T COG0486 60 IIDEVLVLYFKAPNSFTGEDVVEIQCHGGPVVVNLILELLLKLG-ARLA---------EP-G-EF---SKRAFLNGKLDL 124 (454)
T ss_pred EeeeeeEEEEeCCCCcccccEEEEEcCCCHHHHHHHHHHHHHcC-Ceec---------CC-C-cc---hHHHHhcCCccH
Confidence 4556667788888899887 56778888888877543332 2111 11 1 11 24555555 555
Q ss_pred ecC--------CCChHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHcC-CCCCC
Q 038523 341 FML--------PFNHTDFIDILTDFVE--RKIVPMSRIDDAVRRILRVKFTMG-LFEKP 388 (631)
Q Consensus 341 ~l~--------~~~~~~~~~~l~~av~--~g~i~~~~ld~av~Ril~~k~~~G-l~~~p 388 (631)
.-. +.+. .....|++ +|.+ .+++++=.++++.+....- ..|.|
T Consensus 125 tqAEai~dLI~A~te----~a~r~A~~~l~G~l-s~~i~~lr~~li~~~a~vEa~IDfp 178 (454)
T COG0486 125 TQAEAIADLIDAKTE----QAARIALRQLQGAL-SQLINELREALLELLAQVEANIDFP 178 (454)
T ss_pred HHHHHHHHHHhCCCH----HHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHheEeCCCC
Confidence 311 1111 12233332 6777 4678888888988888762 34544
No 9
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=72.56 E-value=15 Score=37.17 Aligned_cols=91 Identities=15% Similarity=-0.041 Sum_probs=62.3
Q ss_pred ccHHHHHHHHhCCceEEEeccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCc
Q 038523 260 HMPAYNDAIIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGID 339 (631)
Q Consensus 260 ~l~pF~~~i~ag~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D 339 (631)
++.-.+++.+.|+.+||+--.-|..----.+++.| .+++++. +=.|+-|.+- .. .+.+.+|++-|+|
T Consensus 147 D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l-~~i~e~~--~vpVivdAGI----gt------~sDa~~AmElGaD 213 (267)
T CHL00162 147 DPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNL-QIIIENA--KIPVIIDAGI----GT------PSEASQAMELGAS 213 (267)
T ss_pred CHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHH-HHHHHcC--CCcEEEeCCc----CC------HHHHHHHHHcCCC
Confidence 34567788999999999954433211223477777 5777764 4567777442 21 3457899999999
Q ss_pred eecCC------CChHHHHHHHHHHHHcCCC
Q 038523 340 MFMLP------FNHTDFIDILTDFVERKIV 363 (631)
Q Consensus 340 ~~l~~------~~~~~~~~~l~~av~~g~i 363 (631)
-+++. .++.++.+++..||+.|++
T Consensus 214 gVL~nSaIakA~dP~~mA~a~~~AV~AGR~ 243 (267)
T CHL00162 214 GVLLNTAVAQAKNPEQMAKAMKLAVQAGRL 243 (267)
T ss_pred EEeecceeecCCCHHHHHHHHHHHHHHHHH
Confidence 99863 4666778888888887754
No 10
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=59.32 E-value=32 Score=34.41 Aligned_cols=88 Identities=14% Similarity=-0.025 Sum_probs=60.2
Q ss_pred HHHHHHHhCCceEEEeccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCceec
Q 038523 263 AYNDAIIKGVSTVMVSYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFM 342 (631)
Q Consensus 263 pF~~~i~ag~~~vM~s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l 342 (631)
--+++.+.|+.+||+--.-|..----.|++.| .+++++. +=-||-|.+- +. ...+..+++-|+|-+|
T Consensus 143 ~arrLee~GcaavMPl~aPIGSg~G~~n~~~l-~iiie~a--~VPviVDAGi--------G~--pSdAa~aMElG~DaVL 209 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPIGSGLGLQNPYNL-EIIIEEA--DVPVIVDAGI--------GT--PSDAAQAMELGADAVL 209 (262)
T ss_pred HHHHHHhcCceEeccccccccCCcCcCCHHHH-HHHHHhC--CCCEEEeCCC--------CC--hhHHHHHHhcccceee
Confidence 34567789999999854444222223577777 5888876 7778888763 10 1235799999999999
Q ss_pred CC------CChHHHHHHHHHHHHcCCC
Q 038523 343 LP------FNHTDFIDILTDFVERKIV 363 (631)
Q Consensus 343 ~~------~~~~~~~~~l~~av~~g~i 363 (631)
+. .|+-.+.+++..||+.|++
T Consensus 210 ~NTAiA~A~DPv~MA~Af~~Av~AGrl 236 (262)
T COG2022 210 LNTAIARAKDPVAMARAFALAVEAGRL 236 (262)
T ss_pred hhhHhhccCChHHHHHHHHHHHHHhHH
Confidence 74 3555667788888887754
No 11
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=58.29 E-value=36 Score=35.87 Aligned_cols=87 Identities=17% Similarity=0.062 Sum_probs=60.0
Q ss_pred HHHHHHHhCCceEEE-eccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCcee
Q 038523 263 AYNDAIIKGVSTVMV-SYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMF 341 (631)
Q Consensus 263 pF~~~i~ag~~~vM~-s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 341 (631)
-.+++.+.|+.+||+ .-..=.|.+.+ ++..|..+.+ + .+-.|+-|.+- .. ...+.+|++-|+|=+
T Consensus 210 ~a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~e-~--~~vpVivdAGI----g~------~sda~~AmelGadgV 275 (326)
T PRK11840 210 AAKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIVE-G--ATVPVLVDAGV----GT------ASDAAVAMELGCDGV 275 (326)
T ss_pred HHHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHHH-c--CCCcEEEeCCC----CC------HHHHHHHHHcCCCEE
Confidence 345677779999999 43333566655 8888865544 4 56667777652 11 345789999999999
Q ss_pred cCC------CChHHHHHHHHHHHHcCCC
Q 038523 342 MLP------FNHTDFIDILTDFVERKIV 363 (631)
Q Consensus 342 l~~------~~~~~~~~~l~~av~~g~i 363 (631)
|+. .++..+.+++..||+.|++
T Consensus 276 L~nSaIa~a~dPv~Ma~A~~~av~aGr~ 303 (326)
T PRK11840 276 LMNTAIAEAKNPVLMARAMKLAVEAGRL 303 (326)
T ss_pred EEcceeccCCCHHHHHHHHHHHHHHHHH
Confidence 874 3566677888888887754
No 12
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=57.12 E-value=26 Score=25.60 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Q 038523 353 ILTDFVERKIVPMSRIDDAVRRILRVKFTMG 383 (631)
Q Consensus 353 ~l~~av~~g~i~~~~ld~av~Ril~~k~~~G 383 (631)
.....++...-+.+.|++.|..+|.+|..+|
T Consensus 12 e~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg 42 (45)
T cd00938 12 ELVRKLKAEKASKEQIAEEVAKLLELKAQLG 42 (45)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence 4555667788889999999999999999987
No 13
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=53.35 E-value=22 Score=31.41 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=27.9
Q ss_pred CcccchhhhH-HHHHHhhhccccCCCCCCCCCCCCCCCHHHHHHHHHhhCCHHHHH
Q 038523 1 MRMTSLATLG-FLLLCCMAFAIHASDPGYMKFRDPQQPLSKRIRDLMNRMTLEEKI 55 (631)
Q Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~ll~~mtleeKi 55 (631)
||...+.+++ ++++++.||++.............+...++.++++-..||-+|=.
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~~~~~~y~~~v~qG~~~~~~~l~~l~~GmTk~qV~ 56 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPNDVAKIHVGMTQQQVA 56 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCCCCcccccccCCccccCCHHHHHHhcCCCCHHHHH
Confidence 7666664443 333445555332211111122344455677788888889844433
No 14
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=51.33 E-value=13 Score=24.67 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=13.7
Q ss_pred HHHHHHHhCCceEEEecc
Q 038523 263 AYNDAIIKGVSTVMVSYS 280 (631)
Q Consensus 263 pF~~~i~ag~~~vM~s~~ 280 (631)
-++.++++|+++||+-|.
T Consensus 12 ~~~~~l~~GVDgI~Td~p 29 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDYP 29 (30)
T ss_dssp HHHHHHHHT-SEEEES-H
T ss_pred HHHHHHHcCCCEeeCCCC
Confidence 468899999999999663
No 15
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=45.21 E-value=78 Score=32.07 Aligned_cols=85 Identities=19% Similarity=0.069 Sum_probs=55.7
Q ss_pred HHHHHHhCCceEEE--eccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCcee
Q 038523 264 YNDAIIKGVSTVMV--SYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMF 341 (631)
Q Consensus 264 F~~~i~ag~~~vM~--s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 341 (631)
-+++.+.|+..||+ +-+. .|. .-.++.+|. .+|++ .+-.||-|.. |.. .+.+.+|++.|+|-+
T Consensus 137 ar~l~~~G~~~vmPlg~pIG-sg~-Gi~~~~~I~-~I~e~--~~vpVI~egG----I~t------peda~~AmelGAdgV 201 (248)
T cd04728 137 AKRLEDAGCAAVMPLGSPIG-SGQ-GLLNPYNLR-IIIER--ADVPVIVDAG----IGT------PSDAAQAMELGADAV 201 (248)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCC-CCCCHHHHH-HHHHh--CCCcEEEeCC----CCC------HHHHHHHHHcCCCEE
Confidence 45666779999999 5443 232 223577776 66666 4556776643 221 345789999999999
Q ss_pred cCCC------ChHHHHHHHHHHHHcCCC
Q 038523 342 MLPF------NHTDFIDILTDFVERKIV 363 (631)
Q Consensus 342 l~~~------~~~~~~~~l~~av~~g~i 363 (631)
++.. ++....+++..+++.|+.
T Consensus 202 lV~SAIt~a~dP~~ma~af~~Av~aGr~ 229 (248)
T cd04728 202 LLNTAIAKAKDPVAMARAFKLAVEAGRL 229 (248)
T ss_pred EEChHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9743 455566777777777754
No 16
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=39.04 E-value=4.9e+02 Score=27.44 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=38.0
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHHHcCCCeeee-cccccccCCCCCccccccCCCHHHHHHHHh-hhccc
Q 038523 139 VGLGATRDPDLVRRIGAATALEVRATGINYAFA-PCIAVCRDPRWGRCFESYSEDPKIVKLMTE-IIPGL 206 (631)
Q Consensus 139 ~~l~at~d~~la~~~g~~~g~el~a~Gin~~~a-PvvDv~~~p~~gr~~rsfgeDp~lv~~~a~-~v~G~ 206 (631)
..+ ...|++...+.++.. .+.-.-+|++|++ |+--+.+. .. .-....||.++.++.. +++.+
T Consensus 69 vQl-~g~~~~~~~~aa~~~-~~~g~d~IdlN~gCP~~~v~~~-g~---Gs~ll~~p~~~~eiv~av~~a~ 132 (321)
T PRK10415 69 VQI-AGSDPKEMADAARIN-VESGAQIIDINMGCPAKKVNRK-LA---GSALLQYPDLVKSILTEVVNAV 132 (321)
T ss_pred EEE-eCCCHHHHHHHHHHH-HHCCCCEEEEeCCCCHHHHcCC-Cc---ccHHhcCHHHHHHHHHHHHHhc
Confidence 344 335888776666553 4455567888888 55322221 11 2457789999999877 55544
No 17
>PRK00208 thiG thiazole synthase; Reviewed
Probab=38.57 E-value=1.3e+02 Score=30.47 Aligned_cols=85 Identities=19% Similarity=0.106 Sum_probs=54.5
Q ss_pred HHHHHHhCCceEEE--eccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCcee
Q 038523 264 YNDAIIKGVSTVMV--SYSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMF 341 (631)
Q Consensus 264 F~~~i~ag~~~vM~--s~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~ 341 (631)
-+++.+.|++.||+ +-+. .|.. -.++.++. .++++. +--||-|.. |.. .+.+.+|++.|+|-+
T Consensus 137 ak~l~~~G~~~vmPlg~pIG-sg~g-i~~~~~i~-~i~e~~--~vpVIveaG----I~t------peda~~AmelGAdgV 201 (250)
T PRK00208 137 AKRLEEAGCAAVMPLGAPIG-SGLG-LLNPYNLR-IIIEQA--DVPVIVDAG----IGT------PSDAAQAMELGADAV 201 (250)
T ss_pred HHHHHHcCCCEeCCCCcCCC-CCCC-CCCHHHHH-HHHHhc--CCeEEEeCC----CCC------HHHHHHHHHcCCCEE
Confidence 45666779999999 5444 3332 23477764 566653 445666643 222 345789999999999
Q ss_pred cCCC------ChHHHHHHHHHHHHcCCC
Q 038523 342 MLPF------NHTDFIDILTDFVERKIV 363 (631)
Q Consensus 342 l~~~------~~~~~~~~l~~av~~g~i 363 (631)
++.. ++....+++..+|+.|+.
T Consensus 202 lV~SAItka~dP~~ma~af~~Av~aGr~ 229 (250)
T PRK00208 202 LLNTAIAVAGDPVAMARAFKLAVEAGRL 229 (250)
T ss_pred EEChHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 9743 455566777777776643
No 18
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=38.48 E-value=81 Score=20.95 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 038523 350 FIDILTDFVERKIVPMSRIDDAVRRIL 376 (631)
Q Consensus 350 ~~~~l~~av~~g~i~~~~ld~av~Ril 376 (631)
-+..|.+..++|.|+++..++.-++||
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 456788999999999999999998887
No 19
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=37.21 E-value=61 Score=21.88 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCC
Q 038523 360 RKIVPMSRIDDAVRRILRVKFTMGLF 385 (631)
Q Consensus 360 ~g~i~~~~ld~av~Ril~~k~~~Gl~ 385 (631)
.|.|+.+.+-+++.||...+.+.|-.
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999998865
No 20
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=35.37 E-value=77 Score=35.62 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=41.3
Q ss_pred HhCCceEEEe-ccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccC-CCCChHHHHHHHHHcCCceecC
Q 038523 269 IKGVSTVMVS-YSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTP-EHANYSYSVLAGVNAGIDMFML 343 (631)
Q Consensus 269 ~ag~~~vM~s-~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~-~~~~~~~~~~~al~AG~D~~l~ 343 (631)
+.|+..||+. |..+-. ....-..+=|++=+||+|.|+||.++-+-..-. ...+.++.+.---.-|.|+.|.
T Consensus 49 ~~g~~~il~NtYhl~~r----~~~~~~~gGlh~f~~w~g~ilTDSGgfQv~s~g~~~ltpe~~i~~Q~~iGsDI~~~ 121 (487)
T PRK13533 49 EFGAEILITNSYIIYRS----LREKALEKGLHKLLGFDGPIMTDSGSYQLLVYGDVEVTNEEILEFQRKIGSDIGVP 121 (487)
T ss_pred HhCCCEEEeeHHHHHhh----hhHHHHhCCHHHHhCCCCCeEeccCCcEEEEcCCccCCHHHHHHHHHHhCCCEEeE
Confidence 5688888885 332211 111011233677899999999999976544321 1223334444444669999984
No 21
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=33.99 E-value=54 Score=35.44 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.6
Q ss_pred HHhhcCCCcEEeCchhhh
Q 038523 298 LKGTLKFRGFVISDWQGI 315 (631)
Q Consensus 298 LR~~lgf~G~viSD~~~m 315 (631)
|.+=+||+|.|+||.++-
T Consensus 76 lH~fm~w~gpilTDSGgf 93 (372)
T PRK01008 76 LHQFIGRNAPIITDSGGF 93 (372)
T ss_pred HHHHhCCCCcccccCcce
Confidence 557789999999997643
No 22
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.81 E-value=1.7e+02 Score=30.16 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=26.5
Q ss_pred HHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHHHcCCceecCCC
Q 038523 297 FLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGVNAGIDMFMLPF 345 (631)
Q Consensus 297 lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al~AG~D~~l~~~ 345 (631)
-+|++..|.-.|+.+.-. .+.+..|+++|.|++|..+
T Consensus 174 ~~k~~~p~~~~I~VEv~t------------leea~~A~~~GaDiI~LDn 210 (273)
T PRK05848 174 HARKNIPFTAKIEIECES------------LEEAKNAMNAGADIVMCDN 210 (273)
T ss_pred HHHHhCCCCceEEEEeCC------------HHHHHHHHHcCCCEEEECC
Confidence 458888886666665554 2346789999999999643
No 23
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=25.69 E-value=5e+02 Score=26.93 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCeeee-cccccccCCCCCc-cccccCCCHHHHHHHHh
Q 038523 145 RDPDLVRRIGAATALEVRATGINYAFA-PCIAVCRDPRWGR-CFESYSEDPKIVKLMTE 201 (631)
Q Consensus 145 ~d~~la~~~g~~~g~el~a~Gin~~~a-PvvDv~~~p~~gr-~~rsfgeDp~lv~~~a~ 201 (631)
++++...+.++.+ ++..+-+|.+|++ |... ..+ ....++.||..+.++.+
T Consensus 110 ~~~~~~~~~a~~~-~~~gad~ielN~sCP~~~------~~~~~G~~l~~~~~~~~~iv~ 161 (299)
T cd02940 110 YNKEDWTELAKLV-EEAGADALELNFSCPHGM------PERGMGAAVGQDPELVEEICR 161 (299)
T ss_pred CCHHHHHHHHHHH-HhcCCCEEEEECCCCCCC------CCCCCchhhccCHHHHHHHHH
Confidence 4666555555544 2333445566665 4431 111 23567899999988865
No 24
>PRK12277 50S ribosomal protein L13e; Provisional
Probab=24.33 E-value=34 Score=28.27 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.6
Q ss_pred HHHHHcCCCeeeecccccccCCC
Q 038523 159 LEVRATGINYAFAPCIAVCRDPR 181 (631)
Q Consensus 159 ~el~a~Gin~~~aPvvDv~~~p~ 181 (631)
+||++.||+..+|+.+.|.-|++
T Consensus 37 ~ELkaaGi~~~~ArtiGI~VD~R 59 (83)
T PRK12277 37 GELEAAGLDIKNARKLGIRVDKR 59 (83)
T ss_pred HHHHHcCCCHHHhcccCeeeccc
Confidence 47899999999999999998875
No 25
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.19 E-value=9.1e+02 Score=25.20 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHHHH-HcCCceecCCCCh---HHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHH
Q 038523 328 YSVLAGV-NAGIDMFMLPFNH---TDFIDILTDFVERKI----VPMSRIDDAVRRILRV 378 (631)
Q Consensus 328 ~~~~~al-~AG~D~~l~~~~~---~~~~~~l~~av~~g~----i~~~~ld~av~Ril~~ 378 (631)
+.+.+++ ..|+|.+|+.... +.....+.+.+..|. .+.+.+-+-++|.+..
T Consensus 205 ~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 263 (319)
T TIGR00737 205 EDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQL 263 (319)
T ss_pred HHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4467788 6899999986321 234556666666553 2333444455555444
No 26
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=22.13 E-value=77 Score=31.60 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=42.2
Q ss_pred HHHHHHHhCCceEEEeccccCCccc-cCCHHHHHHHHHhhcCCCcEEeCchhhh
Q 038523 263 AYNDAIIKGVSTVMVSYSSWNGLKM-HANRDLVTNFLKGTLKFRGFVISDWQGI 315 (631)
Q Consensus 263 pF~~~i~ag~~~vM~s~~~~~g~pa-~~s~~~l~~lLR~~lgf~G~viSD~~~m 315 (631)
-|+.|++.++.+||++||--.|.|. +.....+|.-|.+-+.+-|+.+=|-.-+
T Consensus 157 I~k~Al~~nAaavIlaHNHPSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIi 210 (224)
T COG2003 157 IFKEALKYNAAAVILAHNHPSGDPTPSRADILITERLKEAGKLLGIRLLDHIII 210 (224)
T ss_pred HHHHHHHhcchhhheeccCCCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEe
Confidence 4789999999999999998777654 3455677888999999988887776543
No 27
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=22.12 E-value=1.7e+02 Score=34.17 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=41.3
Q ss_pred HhCCceEEEe-ccccCCccccCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccC-CCCChHHHHHHHHHcCCceecC
Q 038523 269 IKGVSTVMVS-YSSWNGLKMHANRDLVTNFLKGTLKFRGFVISDWQGIDRITTP-EHANYSYSVLAGVNAGIDMFML 343 (631)
Q Consensus 269 ~ag~~~vM~s-~~~~~g~pa~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~-~~~~~~~~~~~al~AG~D~~l~ 343 (631)
+.|+..|++. |..+ -.|- .......+=|.+-+||+|.|+||.++-+-.... ...+.++.+.-=-.-|.|+.|.
T Consensus 46 ~~g~~~il~NtYhl~-~~pg-~~~~~~~gGlH~f~~w~g~ilTDSGgfQv~s~g~~~~tpe~~i~~Q~~iGsDI~~~ 120 (639)
T PRK13534 46 KLGFDIVITNSYIIY-KTPE-LREKALEKGIHSLIGFDGPIMTDSGSFQLSVYGDVEVTNREIIEFQEKIGVDIGTI 120 (639)
T ss_pred HhCCCEEEehhhhhh-hCCc-hhHHHhcCChHHHhCCCCCeEecCCceeeeecCccccCHHHHHHHHHHhCCCEEEE
Confidence 5688888885 3322 1121 111011234667789999999999976544321 1223233433334669999984
No 28
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=21.81 E-value=2.7e+02 Score=26.32 Aligned_cols=43 Identities=16% Similarity=0.126 Sum_probs=27.3
Q ss_pred HHhcCCCeEEEEEeCCCCCcccCCCCcccCCCCcHHHHHHHhcCCCeEEEEECCCcccc
Q 038523 498 VKASNVSYAIVVVGEQPYAETQGDSLNLTISEPGPSTITNVCAAVKCVVVLVSGRPVTV 556 (631)
Q Consensus 498 ~~~~~~d~~iv~vg~~~~~~~~gd~~~l~lp~~q~~li~~v~~~~~~VvV~~~g~P~~l 556 (631)
+.+..+|+++|.+|.. .|..++.+.....+.-+++..|..++.
T Consensus 95 I~~~~pdiv~vglG~P----------------kQE~~~~~~~~~l~~~v~~~vG~~~d~ 137 (171)
T cd06533 95 INASGADILFVGLGAP----------------KQELWIARHKDRLPVPVAIGVGGSFDF 137 (171)
T ss_pred HHHcCCCEEEEECCCC----------------HHHHHHHHHHHHCCCCEEEEeceeeEe
Confidence 3455788888888754 377788887764344444455665554
No 29
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=21.61 E-value=1.3e+02 Score=27.71 Aligned_cols=58 Identities=16% Similarity=0.306 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHc--CCCCC-CCCchhhhhhcCChHHHHHHHHHHHhhhhhhccCCCC
Q 038523 362 IVPMSRIDDAVRRILRVKFTM--GLFEK-PMADQTFIDQLGSQAHRDLAREAVRKSLVLLKNGENA 424 (631)
Q Consensus 362 ~i~~~~ld~av~Ril~~k~~~--Gl~~~-p~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~~~ 424 (631)
.++.+.+.+++.|+|..+-.- =||-. |+- .=...++.+++-+++.++--|-++|+++|
T Consensus 12 vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy-----~Cs~~eeD~~Ll~RL~~~~NVTvRNDPDG 72 (153)
T PF08756_consen 12 VLSLDEMREAIHRLLDIRDPNVWMLFGTLPFY-----PCSDDEEDLALLKRLRSEPNVTVRNDPDG 72 (153)
T ss_pred cCCHHHHHHHHHHHHhccCCCeeEEecccccc-----cCCCCHHHHHHHHHHHhCCCCeeecCCCc
Confidence 577888999999999886541 02211 221 11236889999999999999999997665
No 30
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=21.46 E-value=1e+02 Score=27.22 Aligned_cols=44 Identities=11% Similarity=0.120 Sum_probs=23.0
Q ss_pred cchhhhHHHHHHhhhccccCCCCCCCCCCCCCCCHHHHHHHHHhhCCHHHHH
Q 038523 4 TSLATLGFLLLCCMAFAIHASDPGYMKFRDPQQPLSKRIRDLMNRMTLEEKI 55 (631)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~ll~~mtleeKi 55 (631)
..+++++++++.+.+|++...... |. +++.++++--.||-++=.
T Consensus 3 ~~~~~~~~~~l~lagCS~~~~~~g---y~-----~~~~v~qv~~GmTr~qV~ 46 (109)
T PRK11251 3 AGILSAAAVLTMLAGCTAYDRNPV---QF-----VEPVVKDVKKGMTRQQVA 46 (109)
T ss_pred hHHHHHHHHHHHHhhCcceecCCC---cc-----cHHHHHHcCCCCCHHHHH
Confidence 345555555666667754332222 11 156677776677655443
No 31
>PLN03007 UDP-glucosyltransferase family protein
Probab=21.45 E-value=1.9e+02 Score=32.47 Aligned_cols=70 Identities=26% Similarity=0.453 Sum_probs=45.8
Q ss_pred CCcEEeCchhhhhhhcc---------CCCCChHHHHHHHHHcCCceecCCCChHHHHHH--HHHH------H--------
Q 038523 304 FRGFVISDWQGIDRITT---------PEHANYSYSVLAGVNAGIDMFMLPFNHTDFIDI--LTDF------V-------- 358 (631)
Q Consensus 304 f~G~viSD~~~m~~~~~---------~~~~~~~~~~~~al~AG~D~~l~~~~~~~~~~~--l~~a------v-------- 358 (631)
=.|+++.+|.--..+-. +.| -.++..|+.+|+=|+++|...+....+ +.+. +
T Consensus 344 ~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G---~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~ 420 (482)
T PLN03007 344 GKGLIIRGWAPQVLILDHQATGGFVTHCG---WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV 420 (482)
T ss_pred cCCEEEecCCCHHHHhccCccceeeecCc---chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccccc
Confidence 46899999874433322 222 246789999999999988644432221 1111 1
Q ss_pred HcCCCCHHHHHHHHHHHH
Q 038523 359 ERKIVPMSRIDDAVRRIL 376 (631)
Q Consensus 359 ~~g~i~~~~ld~av~Ril 376 (631)
+.+.++.+.|.+++++++
T Consensus 421 ~~~~~~~~~l~~av~~~m 438 (482)
T PLN03007 421 KGDFISREKVEKAVREVI 438 (482)
T ss_pred ccCcccHHHHHHHHHHHh
Confidence 335689999999999997
No 32
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=21.35 E-value=1.6e+02 Score=22.23 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 038523 348 TDFIDILTDFVERKIVPMSRIDDAVRRILRVKFT 381 (631)
Q Consensus 348 ~~~~~~l~~av~~g~i~~~~ld~av~Ril~~k~~ 381 (631)
....+.|..++.+|.++.+..++-+.+++..+.+
T Consensus 9 ~~~~~~L~~a~a~GrL~~~Ef~~R~~~a~~A~t~ 42 (53)
T PF08044_consen 9 ERAVDLLRAAFAEGRLSLDEFDERLDAAYAARTR 42 (53)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCcH
Confidence 3567889999999999999999999998877654
No 33
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=21.20 E-value=1.5e+02 Score=31.50 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=43.8
Q ss_pred HHHHHHhCCceEEEe------cc--ccCCccc-cCCHHHHHHHHHhhcCCCcEEeCchhhhhhhccCCCCChHHHHHHHH
Q 038523 264 YNDAIIKGVSTVMVS------YS--SWNGLKM-HANRDLVTNFLKGTLKFRGFVISDWQGIDRITTPEHANYSYSVLAGV 334 (631)
Q Consensus 264 F~~~i~ag~~~vM~s------~~--~~~g~pa-~~s~~~l~~lLR~~lgf~G~viSD~~~m~~~~~~~~~~~~~~~~~al 334 (631)
.+.+|++|+++|-++ |. .+.|.+. .++ .+.++-+--=+++.-||.|-.-- +.-.+++||
T Consensus 164 a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqlt--Av~~~a~aa~~~~v~VIaDGGIr----------~~gDI~KAL 231 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLS--AVIECADAAHGLKGHIISDGGCT----------CPGDVAKAF 231 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHH--HHHHHHHHhccCCCeEEEcCCcC----------chhHHHHHH
Confidence 347899999999877 22 3455552 222 22333333335677788886631 122478999
Q ss_pred HcCCceecCC
Q 038523 335 NAGIDMFMLP 344 (631)
Q Consensus 335 ~AG~D~~l~~ 344 (631)
.+|+|.+|+.
T Consensus 232 A~GAd~VMlG 241 (343)
T TIGR01305 232 GAGADFVMLG 241 (343)
T ss_pred HcCCCEEEEC
Confidence 9999999975
No 34
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=20.98 E-value=1.3e+02 Score=33.89 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHcC
Q 038523 144 TRDPDLVRRIGAATALEVRATG 165 (631)
Q Consensus 144 t~d~~la~~~g~~~g~el~a~G 165 (631)
..+|+.|++++..+|.-+|+.|
T Consensus 194 I~sp~~A~evA~~IG~~lrsTG 215 (631)
T COG2511 194 IRSPEQAREVAERIGYILRSTG 215 (631)
T ss_pred CCCHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999985
No 35
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=20.22 E-value=1.7e+02 Score=31.55 Aligned_cols=18 Identities=22% Similarity=0.490 Sum_probs=15.3
Q ss_pred HHhhcCCCcEEeCchhhh
Q 038523 298 LKGTLKFRGFVISDWQGI 315 (631)
Q Consensus 298 LR~~lgf~G~viSD~~~m 315 (631)
|++=+||+|.|+||.++-
T Consensus 78 Lh~f~~w~~~ilTDSGgf 95 (366)
T PRK00112 78 LHKFMNWDGPILTDSGGF 95 (366)
T ss_pred HHHHhCCCCceeeccCcc
Confidence 567789999999998854
No 36
>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=20.02 E-value=89 Score=29.01 Aligned_cols=47 Identities=23% Similarity=0.232 Sum_probs=34.6
Q ss_pred CCCCcccCCCccCCCccccccCCCCHHHHHHHHHHHHHHHHHcCCCe
Q 038523 122 AVHGHNNVYKATIFPHNVGLGATRDPDLVRRIGAATALEVRATGINY 168 (631)
Q Consensus 122 ~egG~~~~~~~t~fP~~~~l~at~d~~la~~~g~~~g~el~a~Gin~ 168 (631)
+++|++-......+--...|=.|.|...+..+|+.+|+-+...|||.
T Consensus 79 ~~~gvvvSAST~EwaIk~qLYst~dtsA~~niGRVLAqRCLqsGI~f 125 (188)
T KOG3333|consen 79 QNGGVVVSASTREWAIKKQLYSTRDTSACENIGRVLAQRCLQSGINF 125 (188)
T ss_pred ecCCEEEEecccchHHHHHHhhccchHHHHHHHHHHHHHHHHhCcce
Confidence 45555432233344445566778899999999999999999999995
Done!