Query 038525
Match_columns 165
No_of_seqs 295 out of 1660
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.6 2.4E-15 5.2E-20 130.4 7.8 101 58-159 165-270 (968)
2 PLN00113 leucine-rich repeat r 99.6 4.1E-15 8.8E-20 129.0 8.4 102 58-160 213-319 (968)
3 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.9E-20 105.9 -2.0 103 54-161 54-162 (264)
4 PLN03150 hypothetical protein; 99.5 9.9E-14 2.1E-18 115.4 8.1 102 59-161 420-527 (623)
5 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.6E-20 106.0 -4.4 135 25-163 46-187 (264)
6 KOG4194 Membrane glycoprotein 99.4 5.9E-15 1.3E-19 118.4 -1.6 112 47-160 260-376 (873)
7 KOG4194 Membrane glycoprotein 99.4 1E-13 2.2E-18 111.5 2.7 116 46-163 187-331 (873)
8 KOG0444 Cytoskeletal regulator 99.3 1.1E-13 2.3E-18 112.5 -0.5 101 59-162 128-258 (1255)
9 KOG0444 Cytoskeletal regulator 99.2 5.5E-13 1.2E-17 108.4 -1.7 101 60-163 271-376 (1255)
10 KOG0472 Leucine-rich repeat pr 99.2 2.2E-12 4.7E-17 100.0 0.3 104 53-161 432-540 (565)
11 PF13855 LRR_8: Leucine rich r 99.2 1.7E-11 3.6E-16 71.9 3.3 60 58-118 2-61 (61)
12 KOG4237 Extracellular matrix p 99.2 1.5E-12 3.2E-17 100.5 -2.2 108 52-160 62-175 (498)
13 KOG0472 Leucine-rich repeat pr 99.2 5E-13 1.1E-17 103.4 -4.9 97 58-160 207-308 (565)
14 PF14580 LRR_9: Leucine-rich r 99.2 1.5E-11 3.3E-16 86.7 2.7 77 58-138 43-126 (175)
15 PF14580 LRR_9: Leucine-rich r 99.2 4.3E-11 9.4E-16 84.4 4.8 100 58-162 20-126 (175)
16 KOG0618 Serine/threonine phosp 99.1 6.8E-12 1.5E-16 105.2 -0.5 123 37-162 361-489 (1081)
17 PLN03150 hypothetical protein; 99.1 1.2E-10 2.6E-15 97.1 6.4 79 83-161 419-502 (623)
18 KOG0532 Leucine-rich repeat (L 99.1 9.8E-12 2.1E-16 99.8 -0.2 130 25-161 111-246 (722)
19 PF13855 LRR_8: Leucine rich r 99.1 1.7E-10 3.7E-15 67.5 3.8 59 83-160 2-60 (61)
20 PRK15387 E3 ubiquitin-protein 99.0 2.3E-09 5.1E-14 90.7 8.3 98 58-162 343-458 (788)
21 cd00116 LRR_RI Leucine-rich re 98.9 4.8E-10 1E-14 85.7 2.3 60 79-138 162-234 (319)
22 KOG1259 Nischarin, modulator o 98.9 1.4E-10 3.1E-15 87.3 -0.7 99 58-161 308-411 (490)
23 PRK15370 E3 ubiquitin-protein 98.9 7E-09 1.5E-13 87.9 9.1 94 58-161 200-295 (754)
24 cd00116 LRR_RI Leucine-rich re 98.9 7.7E-10 1.7E-14 84.6 2.7 101 59-160 110-232 (319)
25 KOG4237 Extracellular matrix p 98.9 3.4E-10 7.4E-15 87.6 -0.4 92 69-160 261-357 (498)
26 PLN03210 Resistant to P. syrin 98.9 1.4E-08 2.9E-13 90.2 9.5 101 58-161 779-881 (1153)
27 PLN03210 Resistant to P. syrin 98.9 1.6E-08 3.4E-13 89.9 9.8 104 53-160 585-692 (1153)
28 KOG1259 Nischarin, modulator o 98.8 4.1E-10 8.8E-15 84.9 -0.8 98 58-161 285-386 (490)
29 KOG0618 Serine/threonine phosp 98.8 1.1E-10 2.3E-15 98.2 -4.7 99 59-161 361-464 (1081)
30 PRK15370 E3 ubiquitin-protein 98.8 1.3E-08 2.9E-13 86.3 6.4 34 125-161 346-379 (754)
31 PRK15387 E3 ubiquitin-protein 98.7 7.9E-08 1.7E-12 81.6 8.7 95 58-162 243-355 (788)
32 COG4886 Leucine-rich repeat (L 98.7 1E-08 2.3E-13 81.0 2.5 119 36-160 141-288 (394)
33 PF12799 LRR_4: Leucine Rich r 98.6 4E-08 8.8E-13 53.5 3.1 35 59-95 3-37 (44)
34 COG4886 Leucine-rich repeat (L 98.6 3.6E-08 7.9E-13 77.9 3.7 85 59-146 211-298 (394)
35 KOG0532 Leucine-rich repeat (L 98.5 3.1E-09 6.7E-14 85.7 -5.2 99 58-162 122-224 (722)
36 KOG0531 Protein phosphatase 1, 98.4 7.3E-08 1.6E-12 76.9 1.4 100 58-162 96-199 (414)
37 KOG1859 Leucine-rich repeat pr 98.4 4.9E-09 1.1E-13 86.8 -6.1 105 52-161 183-291 (1096)
38 PF12799 LRR_4: Leucine Rich r 98.4 5.4E-07 1.2E-11 49.0 3.6 38 125-163 1-38 (44)
39 KOG1644 U2-associated snRNP A' 98.4 7.8E-07 1.7E-11 63.6 5.1 98 58-158 43-149 (233)
40 KOG3207 Beta-tubulin folding c 98.4 1.3E-07 2.9E-12 74.3 1.3 107 58-165 198-317 (505)
41 KOG0531 Protein phosphatase 1, 98.3 1.6E-07 3.6E-12 74.9 1.3 100 58-162 73-175 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.3 3.9E-07 8.4E-12 78.7 2.4 97 59-156 547-649 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.2 6.8E-07 1.5E-11 77.2 2.0 109 45-156 560-675 (889)
44 KOG1859 Leucine-rich repeat pr 98.2 3.7E-08 8E-13 81.8 -5.9 96 59-161 166-266 (1096)
45 KOG3207 Beta-tubulin folding c 98.1 2.5E-07 5.3E-12 72.8 -2.0 109 52-161 142-258 (505)
46 KOG4579 Leucine-rich repeat (L 98.1 6.1E-08 1.3E-12 65.4 -4.6 83 58-144 54-141 (177)
47 KOG4579 Leucine-rich repeat (L 98.0 2.8E-07 6E-12 62.3 -3.7 97 61-160 31-134 (177)
48 KOG2739 Leucine-rich acidic nu 97.8 6.8E-06 1.5E-10 60.8 1.3 94 59-155 45-149 (260)
49 KOG1909 Ran GTPase-activating 97.8 1.8E-05 3.9E-10 60.9 2.9 110 50-161 179-310 (382)
50 KOG3665 ZYG-1-like serine/thre 97.8 1.8E-05 4E-10 66.9 3.3 108 49-160 141-261 (699)
51 KOG1644 U2-associated snRNP A' 97.7 4.7E-05 1E-09 54.6 3.9 82 51-135 59-150 (233)
52 KOG1909 Ran GTPase-activating 97.5 1.9E-05 4.1E-10 60.8 0.0 77 82-159 157-251 (382)
53 PRK15386 type III secretion pr 97.4 0.00076 1.7E-08 53.8 7.0 32 58-92 73-104 (426)
54 PRK15386 type III secretion pr 97.2 0.0017 3.8E-08 51.8 7.6 28 58-93 95-123 (426)
55 PF13306 LRR_5: Leucine rich r 97.2 0.0017 3.7E-08 42.9 6.4 95 58-157 13-111 (129)
56 KOG2123 Uncharacterized conser 97.2 9.8E-06 2.1E-10 60.9 -5.0 93 58-155 20-123 (388)
57 KOG2982 Uncharacterized conser 97.2 7.8E-05 1.7E-09 56.7 -0.4 80 58-138 72-159 (418)
58 KOG3665 ZYG-1-like serine/thre 97.1 0.0001 2.2E-09 62.6 -0.1 103 58-161 123-232 (699)
59 PF00560 LRR_1: Leucine Rich R 97.0 0.00023 4.9E-09 32.6 0.4 19 84-103 2-20 (22)
60 PF13306 LRR_5: Leucine rich r 96.9 0.0038 8.1E-08 41.2 5.8 100 46-152 25-129 (129)
61 KOG2739 Leucine-rich acidic nu 96.8 0.00097 2.1E-08 49.6 2.8 84 75-162 36-129 (260)
62 PF00560 LRR_1: Leucine Rich R 96.7 0.00063 1.4E-08 31.1 0.8 22 126-148 1-22 (22)
63 KOG2982 Uncharacterized conser 96.6 0.0014 3.1E-08 50.0 2.2 81 35-118 71-158 (418)
64 COG5238 RNA1 Ran GTPase-activa 96.6 0.0026 5.7E-08 48.1 3.4 37 123-159 212-252 (388)
65 KOG2120 SCF ubiquitin ligase, 96.4 0.00023 4.9E-09 54.3 -2.9 39 123-161 311-350 (419)
66 PF13504 LRR_7: Leucine rich r 95.9 0.0051 1.1E-07 26.2 1.2 13 83-95 2-14 (17)
67 KOG2123 Uncharacterized conser 95.5 0.00035 7.6E-09 52.8 -5.4 77 81-160 18-99 (388)
68 COG5238 RNA1 Ran GTPase-activa 95.4 0.025 5.5E-07 42.9 4.1 103 55-162 91-227 (388)
69 smart00370 LRR Leucine-rich re 95.2 0.016 3.6E-07 27.2 1.8 20 81-101 1-20 (26)
70 smart00369 LRR_TYP Leucine-ric 95.2 0.016 3.6E-07 27.2 1.8 20 81-101 1-20 (26)
71 KOG0473 Leucine-rich repeat pr 94.7 0.0004 8.7E-09 51.2 -6.8 78 58-138 43-124 (326)
72 KOG0473 Leucine-rich repeat pr 94.2 0.00069 1.5E-08 50.0 -6.6 64 52-119 61-124 (326)
73 smart00369 LRR_TYP Leucine-ric 94.0 0.051 1.1E-06 25.5 1.9 20 124-144 1-20 (26)
74 smart00370 LRR Leucine-rich re 94.0 0.051 1.1E-06 25.5 1.9 20 124-144 1-20 (26)
75 KOG2120 SCF ubiquitin ligase, 91.4 0.021 4.7E-07 43.8 -2.3 54 107-160 186-245 (419)
76 smart00365 LRR_SD22 Leucine-ri 89.4 0.33 7.2E-06 23.0 1.7 14 82-95 2-15 (26)
77 smart00364 LRR_BAC Leucine-ric 88.9 0.3 6.5E-06 23.2 1.3 17 83-100 3-19 (26)
78 KOG3864 Uncharacterized conser 88.2 0.038 8.3E-07 39.9 -2.9 75 59-134 103-185 (221)
79 PF13516 LRR_6: Leucine Rich r 87.3 0.26 5.7E-06 22.5 0.6 14 82-95 2-15 (24)
80 smart00368 LRR_RI Leucine rich 85.7 0.69 1.5E-05 22.1 1.7 13 83-95 3-15 (28)
81 KOG1947 Leucine rich repeat pr 82.2 0.41 8.9E-06 38.5 -0.1 56 105-160 242-306 (482)
82 KOG3864 Uncharacterized conser 79.1 0.28 6E-06 35.6 -1.7 95 62-158 83-185 (221)
83 KOG1947 Leucine rich repeat pr 70.5 2.2 4.7E-05 34.3 1.1 101 54-155 212-327 (482)
84 TIGR00864 PCC polycystin catio 62.0 5.1 0.00011 39.6 1.9 32 63-95 1-32 (2740)
85 KOG3763 mRNA export factor TAP 61.1 4.4 9.5E-05 33.8 1.2 62 58-119 219-283 (585)
86 KOG3763 mRNA export factor TAP 56.7 5.5 0.00012 33.3 1.0 57 81-138 217-283 (585)
87 smart00367 LRR_CC Leucine-rich 56.6 9.4 0.0002 17.5 1.5 12 149-160 2-13 (26)
88 TIGR00864 PCC polycystin catio 47.0 12 0.00026 37.3 1.7 23 47-70 10-32 (2740)
89 KOG4308 LRR-containing protein 42.7 0.7 1.5E-05 38.0 -6.1 35 126-160 263-301 (478)
90 KOG4341 F-box protein containi 25.9 50 0.0011 27.1 1.9 12 124-135 371-382 (483)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.59 E-value=2.4e-15 Score=130.43 Aligned_cols=101 Identities=26% Similarity=0.427 Sum_probs=44.2
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
+|++|++++|.+.+.+ |..++.+++|++|++++|.+++.+|..++.+++|++|++++|.++ .++.+++|++|++
T Consensus 165 ~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 165 SLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCEEECccCcccccC-ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 4444444444444444 444444444444444444444444444444444444444444433 2333444444444
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCC
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
++|.+.+.+|..+.++++|+.|++++|
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCC
Confidence 444444334444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.58 E-value=4.1e-15 Score=129.04 Aligned_cols=102 Identities=29% Similarity=0.423 Sum_probs=46.1
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
+|++|++++|.+.+.+ |..++.+++|++|++++|.+++.+|..++.+++|+.|++++|.++ .+..+++|+.|++
T Consensus 213 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 213 SLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CccEEECcCCccCCcC-ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 3444444444444444 444444444444444444444444444444444444444444433 2333444444444
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++|.+.+.+|..+.++++|+.|++++|+
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCc
Confidence 4444444444444444444444444443
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=1.3e-15 Score=105.86 Aligned_cols=103 Identities=23% Similarity=0.279 Sum_probs=69.5
Q ss_pred ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCC
Q 038525 54 SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLL 127 (165)
Q Consensus 54 ~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L 127 (165)
.+. +++.|++++|+++ .+ |.+++.+++|+.|.++-|++. ..|..|+.++.|+.||+.+|.+. .|-.++.|
T Consensus 54 ~l~-nlevln~~nnqie-~l-p~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 54 ELK-NLEVLNLSNNQIE-EL-PTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred Hhh-hhhhhhcccchhh-hc-Chhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 344 5667777777777 66 777777777777777777777 77777777777777777777765 34445556
Q ss_pred CEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 128 QNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 128 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+.|.+++|.++ .+|..++++++|+.|.+++|..
T Consensus 130 ralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 130 RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred HHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 66666666665 5566666666666666666543
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=9.9e-14 Score=115.39 Aligned_cols=102 Identities=25% Similarity=0.344 Sum_probs=93.8
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS 133 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls 133 (165)
++.|+|++|.+.|.+ |..++.+++|+.|++++|.++|.+|..++.+++|+.|++++|+++ .++.+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 779999999999999 999999999999999999999999999999999999999999997 68899999999999
Q ss_pred CCCCCCcccccccCC-CCCcEEEccCCcc
Q 038525 134 HNNLSDSQFRFVIPY-LRLSVQCVWTCHS 161 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l-~~L~~L~l~~n~~ 161 (165)
+|.++|.+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 999999999988764 4677888888763
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.2e-15 Score=106.04 Aligned_cols=135 Identities=21% Similarity=0.221 Sum_probs=116.0
Q ss_pred cccccCCCccccccccccccCCCc--hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC-CCCCcC
Q 038525 25 VHVAASENRKTSFTQQRLVEGQDS--SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS-GSIPPQ 101 (165)
Q Consensus 25 ~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~ 101 (165)
..+++....+.+|..+.+..+++. +...+.++ +++.|+++-|++. .+ |..|+.++.|+.||+++|++. ..+|..
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~-klr~lnvgmnrl~-~l-prgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP-KLRILNVGMNRLN-IL-PRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhch-hhhheecchhhhh-cC-ccccCCCchhhhhhccccccccccCCcc
Confidence 446677777788888888777763 33457788 8999999999998 77 999999999999999999985 357899
Q ss_pred cCCCCCCCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccCc
Q 038525 102 IGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTI 163 (165)
Q Consensus 102 ~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 163 (165)
|..+..|+-|.+++|.+. .++.+++|+.|.+.+|.+- .+|..++.++.|+.|.+.+|+.++
T Consensus 123 ff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 123 FFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred hhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeee
Confidence 999999999999999988 8899999999999999997 789999999999999999998653
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.45 E-value=5.9e-15 Score=118.45 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=78.4
Q ss_pred CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI 121 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~ 121 (165)
+....|-.+. ++++|+|..|++...- ...+.+++.|+.|++|+|.|..+.++.+...++|++|+|++|+++ +|
T Consensus 260 L~DG~Fy~l~-kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 260 LDDGAFYGLE-KMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccCcceeeec-ccceeecccchhhhhh-cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 3455566666 6778888888877444 667778888888888888888777787777888888888888877 45
Q ss_pred ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
..+..|++|+|++|++....-..|..+.+|+.|+|++|.
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 556666666666666654444455566666666666665
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.40 E-value=1e-13 Score=111.46 Aligned_cols=116 Identities=21% Similarity=0.147 Sum_probs=72.7
Q ss_pred CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC------------------------CCCCcC
Q 038525 46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS------------------------GSIPPQ 101 (165)
Q Consensus 46 ~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~------------------------~~~p~~ 101 (165)
.+....|..+. +|..|.|+.|+++ .+|+..|..+++|+.|||..|+|. ..-...
T Consensus 187 ~l~~~~F~~ln-sL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 187 TLETGHFDSLN-SLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ccccccccccc-hheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 33444555555 5556666666655 332445555555555555555544 223334
Q ss_pred cCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccCc
Q 038525 102 IGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTI 163 (165)
Q Consensus 102 ~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 163 (165)
|..+.++++|+|..|+++ .+-++++|+.|++|.|.|....++.+...++|++|+|++|+++.
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 555566666666666665 55677778888888888877777788888888888888887643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.35 E-value=1.1e-13 Score=112.51 Aligned_cols=101 Identities=26% Similarity=0.296 Sum_probs=79.4
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-------------------
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------------------- 119 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------------------- 119 (165)
+.+|++|+|++. .+|-+-|.+++.|-+||||+|++. .+|+++..+.+|++|++++|++.
T Consensus 128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 446666677766 442344567777788888888888 77888888888999999998764
Q ss_pred -----------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 120 -----------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 120 -----------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++..+.+|..+|+|.|.+. .+|+.+.++.+|+.|+|++|+++
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 3445667888899999998 89999999999999999999874
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.24 E-value=5.5e-13 Score=108.40 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=62.8
Q ss_pred eEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEeccC
Q 038525 60 YHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSH 134 (165)
Q Consensus 60 ~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~ 134 (165)
++|++|.|+++ .+ |..+..++.|+.|++.+|+++- -+|..++.+..|+++..++|.+. .+.++..|+.|.|++
T Consensus 271 EtLNlSrNQLt-~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhhccccchhc-cc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc
Confidence 33444444444 34 4555555555555555555431 24555555555555555555554 566777788888888
Q ss_pred CCCCCcccccccCCCCCcEEEccCCccCc
Q 038525 135 NNLSDSQFRFVIPYLRLSVQCVWTCHSTI 163 (165)
Q Consensus 135 N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 163 (165)
|.+. .+|+.+.-++.|+.|+++.|..++
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCcc
Confidence 8876 678888888888888888887653
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.21 E-value=2.2e-12 Score=99.96 Aligned_cols=104 Identities=19% Similarity=0.161 Sum_probs=70.7
Q ss_pred hccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCC
Q 038525 53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLL 127 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L 127 (165)
+.++ ++..|++++|-+. .+ |..++.+..|+.+++|.|++. .+|.-+..+..++.+-.++|++. .+.++.+|
T Consensus 432 ~~l~-kLt~L~L~NN~Ln-~L-P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 432 SQLQ-KLTFLDLSNNLLN-DL-PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred Hhhh-cceeeecccchhh-hc-chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 3344 4455555555555 44 555555555555555555555 55554444455555545555554 47788999
Q ss_pred CEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 128 QNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 128 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+||+.+|.+. .+|..++++++|++|.+++|.+
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 99999999998 7899999999999999999975
No 11
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.19 E-value=1.7e-11 Score=71.89 Aligned_cols=60 Identities=30% Similarity=0.473 Sum_probs=52.1
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL 118 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l 118 (165)
+|++|++++|++. .+++..|.++++|++|++++|.++...|..|..+++|+++++++|+|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 6779999999998 44378899999999999999999977777889999999999999875
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=1.5e-12 Score=100.52 Aligned_cols=108 Identities=21% Similarity=0.194 Sum_probs=89.3
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCC-CCCC-----CCccCc
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRW-KNLT-----EIGKIL 125 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~-n~l~-----~~~~l~ 125 (165)
...+|...++++|..|+|+ .+||..|+.+++|+.||||+|.|+.+-|++|.++..+..|-+-+ |+|+ .|+++.
T Consensus 62 P~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 62 PANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred cccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 4566667889999999999 55589999999999999999999988899999999987777665 8888 678888
Q ss_pred CCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
+++.|.+.-|++.....+.|..+++|..|.+-+|+
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchh
Confidence 88888888888876666777778777777776665
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.17 E-value=5e-13 Score=103.44 Aligned_cols=97 Identities=26% Similarity=0.220 Sum_probs=61.3
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEcCCCCCC----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG-SLLKLKYLNLRWKNLT----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~ls~n~l~----~~~~l~~L~~L~l 132 (165)
++..|++..|++. .+ | .|+++..|++++++.|+|+ .+|.+.. ++.++.+||+..|+++ .+..+.+|.+||+
T Consensus 207 ~L~~LyL~~Nki~-~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl 282 (565)
T KOG0472|consen 207 SLELLYLRRNKIR-FL-P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL 282 (565)
T ss_pred hhHHHHhhhcccc-cC-C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence 4445566666655 44 4 5666666666666666666 5555554 5666677777777766 4555666777777
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
|+|.++ .+|..++++ +|++|.+.+|.
T Consensus 283 SNN~is-~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 283 SNNDIS-SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cCCccc-cCCcccccc-eeeehhhcCCc
Confidence 777776 456666666 67777776664
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=1.5e-11 Score=86.70 Aligned_cols=77 Identities=23% Similarity=0.323 Sum_probs=21.5
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCc-CCCCCCCEEEcCCCCCC------CCccCcCCCEE
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLT------EIGKILLLQNL 130 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~ls~n~l~------~~~~l~~L~~L 130 (165)
+++.|++++|.++ .+ + .+..++.|+.|++++|.|+ .+++.+ ..+++|+.|++++|++. .+..+++|+.|
T Consensus 43 ~L~~L~Ls~N~I~-~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 43 KLEVLDLSNNQIT-KL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp T--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred CCCEEECCCCCCc-cc-c-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 3445555555555 22 2 3444555555555555555 232222 23455555555555554 33344555555
Q ss_pred eccCCCCC
Q 038525 131 DLSHNNLS 138 (165)
Q Consensus 131 ~ls~N~l~ 138 (165)
++.+|+++
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 55555553
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=4.3e-11 Score=84.43 Aligned_cols=100 Identities=23% Similarity=0.306 Sum_probs=39.2
Q ss_pred CeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-----ccCcCCCEEe
Q 038525 58 GWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-----GKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-----~~l~~L~~L~ 131 (165)
++++|++++|.++ .+ . .++ .+.+|+.|++++|.|+ .++ .+..+++|+.|++++|+++.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~-~I-e-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TI-E-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-cc-c-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 5779999999998 44 3 455 5889999999999999 454 577899999999999999833 2589999999
Q ss_pred ccCCCCCCcc-cccccCCCCCcEEEccCCccC
Q 038525 132 LSHNNLSDSQ-FRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 132 ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|++...- =..+..+++|+.|++.+|...
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 9999996421 135678999999999999753
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.13 E-value=6.8e-12 Score=105.21 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=93.7
Q ss_pred ccccccccCCCchhhhh---ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525 37 FTQQRLVEGQDSSQCFR---SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL 113 (165)
Q Consensus 37 l~~~~~~~~~~~~~~~~---~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 113 (165)
|..+.+..+.+...++. ... +|+.|+|++|++. .+|...+.++..|+.|+||+|+++ .+|+.+..+..|++|..
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~-hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFK-HLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHhcCcccccchhhhcccc-ceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 44444444555554443 334 6889999999888 553667788889999999999998 88888888999999999
Q ss_pred CCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 114 RWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 114 s~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
.+|++. .+..++.|+.+|++.|.++...-..-...++|++|++++|.-+
T Consensus 438 hsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 438 HSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 999887 7788899999999999997533333344589999999999743
No 17
>PLN03150 hypothetical protein; Provisional
Probab=99.12 E-value=1.2e-10 Score=97.14 Aligned_cols=79 Identities=27% Similarity=0.272 Sum_probs=74.8
Q ss_pred CCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEcc
Q 038525 83 NLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVW 157 (165)
Q Consensus 83 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~ 157 (165)
.++.|+|++|.++|.+|..++.+++|+.|++++|.++ .++.+++|+.|++++|+++|.+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3788999999999999999999999999999999997 58899999999999999999999999999999999999
Q ss_pred CCcc
Q 038525 158 TCHS 161 (165)
Q Consensus 158 ~n~~ 161 (165)
+|+.
T Consensus 499 ~N~l 502 (623)
T PLN03150 499 GNSL 502 (623)
T ss_pred CCcc
Confidence 9975
No 18
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=9.8e-12 Score=99.78 Aligned_cols=130 Identities=21% Similarity=0.197 Sum_probs=109.5
Q ss_pred cccccCCCccccccccccccCCCchh--hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCc
Q 038525 25 VHVAASENRKTSFTQQRLVEGQDSSQ--CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQI 102 (165)
Q Consensus 25 ~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~ 102 (165)
..++.+...++.+...++..+++..- ....++ |+.|.+++|+++ .+ |..++...+|..||.+.|.+. .+|.++
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp--Lkvli~sNNkl~-~l-p~~ig~~~tl~~ld~s~nei~-slpsql 185 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP--LKVLIVSNNKLT-SL-PEEIGLLPTLAHLDVSKNEIQ-SLPSQL 185 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhhcCc--ceeEEEecCccc-cC-CcccccchhHHHhhhhhhhhh-hchHHh
Confidence 55677777888888888877776322 223344 779999999998 77 889999999999999999998 889999
Q ss_pred CCCCCCCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 103 GSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 103 ~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+.+.+|+.|.+..|++. .+..++ |..||+|.|++. .+|-.|.+|.+|++|-|.+|..
T Consensus 186 ~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCC
Confidence 99999999999999887 555444 899999999998 7999999999999999999963
No 19
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.7e-10 Score=67.52 Aligned_cols=59 Identities=27% Similarity=0.271 Sum_probs=35.3
Q ss_pred CCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 83 NLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 83 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
+|++|++++|+++...+..| .++++|++|++++|.++...|+.|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f-------------------~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSF-------------------SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTT-------------------TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHH-------------------cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666663333344 445555555566666665555666777777777777665
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.97 E-value=2.3e-09 Score=90.73 Aligned_cols=98 Identities=19% Similarity=0.092 Sum_probs=63.3
Q ss_pred CeeEEEeecCCCCcccCCcccCC-----------------CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSC-----------------FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE 120 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~-----------------l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~ 120 (165)
+|++|++++|+++ .+ |..... ..+|+.|++++|.++ .+|.. ..+|+.|++++|+++.
T Consensus 343 ~Lq~LdLS~N~Ls-~L-P~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 343 GLQELSVSDNQLA-SL-PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS 416 (788)
T ss_pred ccceEecCCCccC-CC-CCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC
Confidence 5667777777776 34 322111 124555666666655 34432 2456667777777663
Q ss_pred Ccc-CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 121 IGK-ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 121 ~~~-l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+.. ..+|+.|++++|+++ .+|+.+..+++|+.|++++|+..
T Consensus 417 IP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 417 LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred CCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 222 245777888888887 68888999999999999999863
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=4.8e-10 Score=85.75 Aligned_cols=60 Identities=27% Similarity=0.390 Sum_probs=26.9
Q ss_pred CCCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCC
Q 038525 79 SCFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLS 138 (165)
Q Consensus 79 ~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~ 138 (165)
..+++|++|++++|.+++. ++..+...++|+.|++++|.++ .+..+++|++|++++|.++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 3344455555555544421 1122233345555555555443 2334445555555555554
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.92 E-value=1.4e-10 Score=87.30 Aligned_cols=99 Identities=21% Similarity=0.164 Sum_probs=63.2
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH 134 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~ 134 (165)
.++.|++|+|.+. .+ ..+..+++|+.||+|+|.++ .+-.+-..+.+.+.|.+++|.+. .++.+-+|..||+++
T Consensus 308 kir~L~lS~N~i~-~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 308 KLRRLILSQNRIR-TV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred ceeEEecccccee-ee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc
Confidence 5556666666655 22 13555566666666666655 33333344555666666666555 566677888899999
Q ss_pred CCCCCccc--ccccCCCCCcEEEccCCcc
Q 038525 135 NNLSDSQF--RFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 135 N~l~~~~p--~~~~~l~~L~~L~l~~n~~ 161 (165)
|+|.. .. ..+++++.|+++.+.+|..
T Consensus 384 N~Ie~-ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 384 NQIEE-LDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cchhh-HHHhcccccccHHHHHhhcCCCc
Confidence 98863 22 3678888899998888865
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.91 E-value=7e-09 Score=87.91 Aligned_cols=94 Identities=24% Similarity=0.260 Sum_probs=53.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC--ccCcCCCEEeccCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI--GKILLLQNLDLSHN 135 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~~l~~L~~L~ls~N 135 (165)
.++.|++++|.++ .+ |..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.++.+ .-.++|+.|++++|
T Consensus 200 ~L~~L~Ls~N~Lt-sL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELK-SL-PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLPSALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCC-cC-Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECcCC
Confidence 4557777777776 45 44443 46777777777766 4555432 3566666666666511 11235666666666
Q ss_pred CCCCcccccccCCCCCcEEEccCCcc
Q 038525 136 NLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 136 ~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++ .+|..+. .+|+.|++++|+.
T Consensus 273 ~L~-~LP~~l~--~sL~~L~Ls~N~L 295 (754)
T PRK15370 273 KIS-CLPENLP--EELRYLSVYDNSI 295 (754)
T ss_pred ccC-ccccccC--CCCcEEECCCCcc
Confidence 665 3554443 3566666666653
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.89 E-value=7.7e-10 Score=84.63 Aligned_cols=101 Identities=21% Similarity=0.210 Sum_probs=47.0
Q ss_pred eeEEEeecCCCCc----ccCCcccCCC-CCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---------C
Q 038525 59 WYHIELVECSIKG----ELGSLNFSCF-SNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT---------E 120 (165)
Q Consensus 59 L~~L~ls~n~l~~----~~~p~~~~~l-~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~ 120 (165)
+++|++++|.+.+ .+ ...+..+ ++|+.|++++|.+++. ++..+..+++|+.|++++|.++ .
T Consensus 110 L~~L~ls~~~~~~~~~~~l-~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLL-AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHHHH-HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 5555555555542 11 1223334 5555555555555522 1222334445555555555554 1
Q ss_pred CccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCc
Q 038525 121 IGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 121 ~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~ 160 (165)
+...++|+.|++++|.+++. ++..+..+++|++|++++|+
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 22334555555555555422 12233444555555555554
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.86 E-value=3.4e-10 Score=87.64 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=77.2
Q ss_pred CCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccc
Q 038525 69 IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFR 143 (165)
Q Consensus 69 l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~ 143 (165)
..+..|...|.++++|++|++++|+++++-+.+|.+...++.|.|..|++. .|.++..|+.|+|.+|+|+...|.
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc
Confidence 333443456888999999999999999888888888999999999999887 688888999999999999888888
Q ss_pred cccCCCCCcEEEccCCc
Q 038525 144 FVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 144 ~~~~l~~L~~L~l~~n~ 160 (165)
.|..+.+|..|.+-.|.
T Consensus 341 aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cccccceeeeeehccCc
Confidence 89999999999887765
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.86 E-value=1.4e-08 Score=90.22 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=74.8
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CCCC-ccCcCCCEEeccCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LTEI-GKILLLQNLDLSHN 135 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~-~~l~~L~~L~ls~N 135 (165)
+|++|++++|...+.+ |..++.+++|+.|++++|..-+.+|..+ .+++|+.|++++|. +..+ ...++++.|++++|
T Consensus 779 sL~~L~Ls~n~~l~~l-P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 779 SLTRLFLSDIPSLVEL-PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRT 856 (1153)
T ss_pred cchheeCCCCCCcccc-ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCC
Confidence 6889999999877788 8889999999999999875433777765 67888888888764 3322 22356777777777
Q ss_pred CCCCcccccccCCCCCcEEEccCCcc
Q 038525 136 NLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 136 ~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.++ .+|..+..+++|++|++++|+.
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCC
Confidence 776 5677777777777777776543
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.86 E-value=1.6e-08 Score=89.85 Aligned_cols=104 Identities=17% Similarity=0.141 Sum_probs=56.9
Q ss_pred hccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CC---CCccCcCCC
Q 038525 53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LT---EIGKILLLQ 128 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~---~~~~l~~L~ 128 (165)
..++.+++.|++.++.+. .+ |..| ...+|+.|++++|.+. .+|..+..+++|+.++++++. ++ .+..+++|+
T Consensus 585 ~~lp~~Lr~L~~~~~~l~-~l-P~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le 660 (1153)
T PLN03210 585 DYLPPKLRLLRWDKYPLR-CM-PSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE 660 (1153)
T ss_pred hhcCcccEEEEecCCCCC-CC-CCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCccccCCccc
Confidence 334434556666666554 44 5444 3456666666666665 455555556666666666543 22 444455556
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.|++++|.....+|..+..+++|+.|++++|.
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~ 692 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE 692 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCC
Confidence 66665554444555555555555555555543
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=4.1e-10 Score=84.90 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=81.2
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCC----CccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTE----IGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~----~~~l~~L~~L~ls 133 (165)
.|+++|+|+|.++ .+ ..++.-.+.++.|++|+|.+. .+. .+..+.+|+.||+|+|.++. -..+-+.++|.++
T Consensus 285 ~LtelDLS~N~I~-~i-DESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QI-DESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hh-hhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4779999999998 77 778888999999999999998 444 37889999999999999882 2245678899999
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.|.+. .+ ..++++-+|..|++++|++
T Consensus 361 ~N~iE-~L-SGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hhhHh-hh-hhhHhhhhheeccccccch
Confidence 99986 33 4678888999999999974
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.82 E-value=1.1e-10 Score=98.21 Aligned_cols=99 Identities=22% Similarity=0.200 Sum_probs=78.7
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCc-CcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPP-QIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
|+.|++.+|.++... -+.+.++++|+.|+|++|++. .+|+ .+.++..|+.|++|+|+++ .+..+..|++|...
T Consensus 361 Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHhcCcccccc-hhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc
Confidence 566778888877655 456778888888888888888 6665 4567888888888888887 56677888888888
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+|++. ..| .+..++.|+++|++.|..
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchh
Confidence 88887 677 788889999999988864
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.78 E-value=1.3e-08 Score=86.25 Aligned_cols=34 Identities=21% Similarity=0.048 Sum_probs=19.5
Q ss_pred cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|+.|++++|+++ .+|..+. ++|+.|++++|+.
T Consensus 346 ~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~L 379 (754)
T PRK15370 346 PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNAL 379 (754)
T ss_pred CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcC
Confidence 35666666666665 3454442 4666666666654
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.70 E-value=7.9e-08 Score=81.62 Aligned_cols=95 Identities=19% Similarity=0.117 Sum_probs=49.4
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNN 136 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~ 136 (165)
+|++|++++|+++ .+ |.. .++|+.|++++|.++ .+|.. ...|+.|++++|+++.+ ...++|+.|++++|+
T Consensus 243 ~Lk~LdLs~N~Lt-sL-P~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~ 313 (788)
T PRK15387 243 ELRTLEVSGNQLT-SL-PVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 313 (788)
T ss_pred CCcEEEecCCccC-cc-cCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCccccccccccccceeECCCCc
Confidence 4445555555544 33 321 234444555555444 33331 23455666666666622 134678888888888
Q ss_pred CCCcccccccC----------------C-CCCcEEEccCCccC
Q 038525 137 LSDSQFRFVIP----------------Y-LRLSVQCVWTCHST 162 (165)
Q Consensus 137 l~~~~p~~~~~----------------l-~~L~~L~l~~n~~~ 162 (165)
+++ +|..... + .+|+.|++++|+..
T Consensus 314 L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls 355 (788)
T PRK15387 314 LAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA 355 (788)
T ss_pred ccc-CCCCcccccccccccCccccccccccccceEecCCCccC
Confidence 874 4432111 1 25677777777654
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1e-08 Score=81.03 Aligned_cols=119 Identities=26% Similarity=0.325 Sum_probs=63.3
Q ss_pred cccccccccCCCchh--hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525 36 SFTQQRLVEGQDSSQ--CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL 113 (165)
Q Consensus 36 ~l~~~~~~~~~~~~~--~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 113 (165)
.|..+++..+.+... ....++ .++.|++++|++. .+ |...+..+.|+.|++++|++. .+|........|+++.+
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~-~L~~L~l~~N~l~-~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLP-NLKNLDLSFNDLS-DL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchhhhhhhhhccc-cccccccCCchhh-hh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 344444444444332 344455 5666666666666 44 444445666666666666666 55555444555666666
Q ss_pred CCCC-CC--------------------------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 114 RWKN-LT--------------------------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 114 s~n~-l~--------------------------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++|+ +. .++.+++++.|++++|.++ .++. +..+.+++.|++++|+
T Consensus 217 ~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 217 SNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred cCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cccc-ccccCccCEEeccCcc
Confidence 6663 22 2333444555555555555 2332 5555556666665554
No 33
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.61 E-value=4e-08 Score=53.54 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=16.8
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS 95 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~ 95 (165)
|++|++++|+++ .+ |+.++.+++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l-~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DL-PPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SH-GGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-cc-CchHhCCCCCCEEEecCCCCC
Confidence 445555555555 34 334555555555555555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.6e-08 Score=77.94 Aligned_cols=85 Identities=33% Similarity=0.460 Sum_probs=61.6
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCC
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHN 135 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N 135 (165)
++++.+++|... .. +..+..+..+..+.+++|++. ..+..++.+..+++|++++|.++ .++.+.+++.+++++|
T Consensus 211 L~~l~~~~N~~~-~~-~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 211 LEELDLSNNSII-EL-LSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhhcCCcce-ec-chhhhhcccccccccCCceee-eccchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 445555555432 23 445566666666667777766 44677888899999999999998 6778899999999999
Q ss_pred CCCCccccccc
Q 038525 136 NLSDSQFRFVI 146 (165)
Q Consensus 136 ~l~~~~p~~~~ 146 (165)
.+....|....
T Consensus 288 ~~~~~~~~~~~ 298 (394)
T COG4886 288 SLSNALPLIAL 298 (394)
T ss_pred cccccchhhhc
Confidence 99866665443
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=3.1e-09 Score=85.74 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=66.8
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
.++.++++.|+++ .+ |..+..++ |+.|-+++|+++ .+|..++....|..||.+.|.+. .++.+.+|+.|.+.
T Consensus 122 ~lt~l~ls~NqlS-~l-p~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HL-PDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred HHHHhhhccchhh-cC-ChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 4556677777766 55 55555554 666677777776 66777776677777777777665 56677777777777
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
.|.+. .+|+.+. ...|..||++.||.+
T Consensus 198 Rn~l~-~lp~El~-~LpLi~lDfScNkis 224 (722)
T KOG0532|consen 198 RNHLE-DLPEELC-SLPLIRLDFSCNKIS 224 (722)
T ss_pred hhhhh-hCCHHHh-CCceeeeecccCcee
Confidence 77776 5666666 446677888888753
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=7.3e-08 Score=76.95 Aligned_cols=100 Identities=22% Similarity=0.185 Sum_probs=69.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH 134 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~ 134 (165)
+++.+++.+|++.+ + ...+..+++|++|++++|.|+...+ +..++.|+.|++++|.++ .+..+..|+.+++++
T Consensus 96 ~l~~l~l~~n~i~~-i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEK-I-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred ceeeeeccccchhh-c-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchhccCCccchhhhcccCCc
Confidence 56688888888774 3 3336777888888888888874332 455667888888888877 555577788888888
Q ss_pred CCCCCccccc-ccCCCCCcEEEccCCccC
Q 038525 135 NNLSDSQFRF-VIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 135 N~l~~~~p~~-~~~l~~L~~L~l~~n~~~ 162 (165)
|.+...-+ . ...+..++.+++.+|...
T Consensus 172 n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 172 NRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred chhhhhhh-hhhhhccchHHHhccCCchh
Confidence 88774333 1 466777777777777653
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.39 E-value=4.9e-09 Score=86.85 Aligned_cols=105 Identities=26% Similarity=0.222 Sum_probs=79.2
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~ 128 (165)
++-++ .++.|+|++|++. .. ..+..+++|+.||+++|.+. .+|.--..-.+|+.|.+++|.++ .+.++.+|+
T Consensus 183 Lqll~-ale~LnLshNk~~-~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLP-ALESLNLSHNKFT-KV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLY 257 (1096)
T ss_pred HHHHH-Hhhhhccchhhhh-hh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhh
Confidence 44455 6779999999988 33 37888999999999999998 66652212234999999999988 778889999
Q ss_pred EEeccCCCCCCcc-cccccCCCCCcEEEccCCcc
Q 038525 129 NLDLSHNNLSDSQ-FRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 129 ~L~ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~~ 161 (165)
.||+++|-+.+-- -+.+..+..|+.|+|.+|..
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999999886411 12345567888999998864
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.37 E-value=5.4e-07 Score=49.04 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=25.7
Q ss_pred cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccCc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHSTI 163 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 163 (165)
++|++|++++|+++ .+|..+.++++|+.|++++|+...
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35777777777777 566667777777777777777643
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.36 E-value=7.8e-07 Score=63.62 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=79.4
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~ 131 (165)
....+|+++|.+.. -..|..++.|.+|.+++|.|+.+.|.--..+++|+.|.+.+|++. .+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45589999999874 337899999999999999999666654445788999999999988 667889999999
Q ss_pred ccCCCCCCccc---ccccCCCCCcEEEccC
Q 038525 132 LSHNNLSDSQF---RFVIPYLRLSVQCVWT 158 (165)
Q Consensus 132 ls~N~l~~~~p---~~~~~l~~L~~L~l~~ 158 (165)
+-+|.++..-- -.+..+++|++||.+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999863221 2577899999999865
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.3e-07 Score=74.27 Aligned_cols=107 Identities=18% Similarity=0.261 Sum_probs=68.6
Q ss_pred CeeEEEeecCCCCc-ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEE
Q 038525 58 GWYHIELVECSIKG-ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNL 130 (165)
Q Consensus 58 ~L~~L~ls~n~l~~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L 130 (165)
.++.|.++.|.++- .+ -.....+++|+.|+|.+|..-+..-....-+..|+.|||++|++. ..+.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V-~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDV-QWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHH-HHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 34566666666652 11 222345677778888877422232333344677888888888765 56677888888
Q ss_pred eccCCCCCC-ccccc-----ccCCCCCcEEEccCCccCccC
Q 038525 131 DLSHNNLSD-SQFRF-----VIPYLRLSVQCVWTCHSTIWK 165 (165)
Q Consensus 131 ~ls~N~l~~-~~p~~-----~~~l~~L~~L~l~~n~~~~~~ 165 (165)
+++.+.+.. ..|+. ....++|++|++..|+.-.|+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence 888888764 22333 345678888888888876674
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=1.6e-07 Score=74.93 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=83.0
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH 134 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~ 134 (165)
.++.+.+..|.+.. + -..+..+++|+.+++.+|.|. .+...+..+++|++|++++|.|+ .+..++.|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~-~-~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-I-LNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhh-h-hcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccchhhccchhhheecc
Confidence 45577788888873 3 345888999999999999999 45544778999999999999998 677788899999999
Q ss_pred CCCCCcccccccCCCCCcEEEccCCccC
Q 038525 135 NNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 135 N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
|.++. + +.+..+..|+.+++++|++.
T Consensus 150 N~i~~-~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 150 NLISD-I-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred Ccchh-c-cCCccchhhhcccCCcchhh
Confidence 99983 3 46777999999999999863
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.28 E-value=3.9e-07 Score=78.68 Aligned_cols=97 Identities=23% Similarity=0.320 Sum_probs=53.2
Q ss_pred eeEEEeecCC--CCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEec
Q 038525 59 WYHIELVECS--IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDL 132 (165)
Q Consensus 59 L~~L~ls~n~--l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~l 132 (165)
+++|-+..|. +. .+++..|..++.|++||+++|.=-+.+|..++.+.+|++|++++..++ .++++..|.+|++
T Consensus 547 L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 4455555554 22 221333555666666666655444456666666666666666666555 4555556666666
Q ss_pred cCCCCCCcccccccCCCCCcEEEc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCV 156 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l 156 (165)
..+.-...+|.....+.+|++|.+
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred ccccccccccchhhhcccccEEEe
Confidence 655544444555555666666655
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=6.8e-07 Score=77.23 Aligned_cols=109 Identities=24% Similarity=0.288 Sum_probs=85.7
Q ss_pred CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525 45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----- 119 (165)
Q Consensus 45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----- 119 (165)
..++.+.|..++ .|++||+++|.--+.+ |..++.+-+|++|++++..++ .+|..++.+..|.+|++..+.-.
T Consensus 560 ~~is~~ff~~m~-~LrVLDLs~~~~l~~L-P~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 560 LEISGEFFRSLP-LLRVLDLSGNSSLSKL-PSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hhcCHHHHhhCc-ceEEEECCCCCccCcC-ChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence 446777799999 9999999998877789 999999999999999999999 99999999999999999987643
Q ss_pred CCccCcCCCEEeccCCCC--CCcccccccCCCCCcEEEc
Q 038525 120 EIGKILLLQNLDLSHNNL--SDSQFRFVIPYLRLSVQCV 156 (165)
Q Consensus 120 ~~~~l~~L~~L~ls~N~l--~~~~p~~~~~l~~L~~L~l 156 (165)
....+++|++|.+..-.. ....-..+..+.+|+.+..
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 344588999998865432 2222234455556655554
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=3.7e-08 Score=81.79 Aligned_cols=96 Identities=20% Similarity=0.160 Sum_probs=78.2
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS 133 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls 133 (165)
|...+.++|.+. .. ..++.-++.++.|+|++|+++ ... .+..+++|++||+++|.++ ...++. |+.|.+.
T Consensus 166 L~~a~fsyN~L~-~m-D~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LM-DESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hH-HHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 557788888887 56 667778899999999999998 333 7888999999999999998 233344 9999999
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+|.++. + ..+.++.+|+.||++.|-.
T Consensus 241 nN~l~t-L-~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 241 NNALTT-L-RGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred ccHHHh-h-hhHHhhhhhhccchhHhhh
Confidence 999973 3 4688999999999999854
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.5e-07 Score=72.80 Aligned_cols=109 Identities=18% Similarity=0.031 Sum_probs=58.6
Q ss_pred hhccccCeeEEEeecCCCCcccC-CcccCCCCCCcEEEcccCcCCCCCCcCc-CCCCCCCEEEcCCCCCC------CCcc
Q 038525 52 FRSLQLGWYHIELVECSIKGELG-SLNFSCFSNLQYINLWNNDLSGSIPPQI-GSLLKLKYLNLRWKNLT------EIGK 123 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~ls~n~l~------~~~~ 123 (165)
.+.++ +++.||++.|-+....+ -.....+++|+.|.++.|.+.-...... ..+++++.|.++.|.++ ....
T Consensus 142 ~k~~~-~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 142 SKILP-NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhCC-cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 34455 67788888876653220 2223457778888888887763332222 24567777777777776 2234
Q ss_pred CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+|+++.|++..|...........-+..|+.|+|++|..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 45555555555532112222233344455555555543
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=6.1e-08 Score=65.40 Aligned_cols=83 Identities=27% Similarity=0.389 Sum_probs=64.4
Q ss_pred CeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~l 132 (165)
.++..++++|.+. .+ |..|. .++..+.+++++|+++ .+|.++..++.|+.++++.|.+. .+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk-~f-p~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KF-PKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hC-CHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 4667889999888 56 55554 4568888999999998 78888888999999999999887 4445778888888
Q ss_pred cCCCCCCccccc
Q 038525 133 SHNNLSDSQFRF 144 (165)
Q Consensus 133 s~N~l~~~~p~~ 144 (165)
.+|.+. .+|..
T Consensus 131 ~~na~~-eid~d 141 (177)
T KOG4579|consen 131 PENARA-EIDVD 141 (177)
T ss_pred CCCccc-cCcHH
Confidence 888876 55544
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=2.8e-07 Score=62.30 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=57.4
Q ss_pred EEEeecCCCCcccC--CcccCCCCCCcEEEcccCcCCCCCCcCcCC-CCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 61 HIELVECSIKGELG--SLNFSCFSNLQYINLWNNDLSGSIPPQIGS-LLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 61 ~L~ls~n~l~~~~~--p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
.++|+++++- .++ +..+.....|+..++++|.+. .+|+.|.. .+.++.+++++|.++ .+..++.|+.++++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 5566666543 220 223344455666667777766 55555543 346666777777666 55666667777777
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCc
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.|.+. ..|+.+..+.+|..|+..+|.
T Consensus 109 ~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 109 FNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred cCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 77766 456666666666666665553
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.82 E-value=6.8e-06 Score=60.76 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=58.3
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccC--cCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEE
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNN--DLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNL 130 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N--~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L 130 (165)
++.+.+.+..++. -..|..+++|++|++|.| ++.+.++.....+++|+++++++|+++ ....+.+|..|
T Consensus 45 le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 45 LELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred hhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 4466666666652 235677778888888888 555555555555677888888888776 34455667777
Q ss_pred eccCCCCCCccc---ccccCCCCCcEEE
Q 038525 131 DLSHNNLSDSQF---RFVIPYLRLSVQC 155 (165)
Q Consensus 131 ~ls~N~l~~~~p---~~~~~l~~L~~L~ 155 (165)
++.+|..+..-- ..|.-+++|++|+
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhcccc
Confidence 777776553111 1344455666655
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.78 E-value=1.8e-05 Score=60.89 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=77.3
Q ss_pred hhhhccccCeeEEEeecCCCCcc----cCCcccCCCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC--
Q 038525 50 QCFRSLQLGWYHIELVECSIKGE----LGSLNFSCFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT-- 119 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~-- 119 (165)
..|+..+ .++++.+..|.+... + ...|..+++|++||+.+|.++.. +...+..+++|+.++++++.+.
T Consensus 179 ~~~~~~~-~leevr~~qN~I~~eG~~al-~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~ 256 (382)
T KOG1909|consen 179 EAFQSHP-TLEEVRLSQNGIRPEGVTAL-AEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE 256 (382)
T ss_pred HHHHhcc-ccceEEEecccccCchhHHH-HHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc
Confidence 3455555 788888888887521 1 23467788899999999888732 2345667888888888888887
Q ss_pred -------CC-ccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525 120 -------EI-GKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 -------~~-~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+ ...++|+.+.+.+|.++.. +...+...+.|..|++++|+.
T Consensus 257 Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 257 GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11 2467888898898888632 223455677888888888875
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.8e-05 Score=66.95 Aligned_cols=108 Identities=16% Similarity=0.203 Sum_probs=76.7
Q ss_pred hhhhhccccCeeEEEeecCCCCc-ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CC
Q 038525 49 SQCFRSLQLGWYHIELVECSIKG-ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EI 121 (165)
Q Consensus 49 ~~~~~~l~~~L~~L~ls~n~l~~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~ 121 (165)
......+| +|+.|.+++-.+.. .+ ..-..++++|+.||+|+.+++ .+ ..++.+++|+.|.+.+=.+. .+
T Consensus 141 ~kig~~LP-sL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 141 KKIGTMLP-SLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHhhhCc-ccceEEecCceecchhH-HHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 34445567 88899888876642 22 334567889999999999888 33 56788888888888776665 66
Q ss_pred ccCcCCCEEeccCCCCCCcc--c----ccccCCCCCcEEEccCCc
Q 038525 122 GKILLLQNLDLSHNNLSDSQ--F----RFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 122 ~~l~~L~~L~ls~N~l~~~~--p----~~~~~l~~L~~L~l~~n~ 160 (165)
.++++|+.||+|........ . +.-..++.|++||.++..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 78899999999887654211 1 233457899999988764
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=4.7e-05 Score=54.65 Aligned_cols=82 Identities=22% Similarity=0.221 Sum_probs=65.3
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCC--cCcCCCCCCCEEEcCCCCCC--------C
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIP--PQIGSLLKLKYLNLRWKNLT--------E 120 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--~~~~~l~~L~~L~ls~n~l~--------~ 120 (165)
.|..++ +|.+|.+++|.++ .++|.--..+++|..|.+.+|+|. .+. +.+..++.|++|.+-+|+.+ -
T Consensus 59 ~lp~l~-rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 59 NLPHLP-RLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred cCCCcc-ccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence 366677 8999999999999 442655556778999999999987 333 23567889999999999987 5
Q ss_pred CccCcCCCEEeccCC
Q 038525 121 IGKILLLQNLDLSHN 135 (165)
Q Consensus 121 ~~~l~~L~~L~ls~N 135 (165)
+..+++|+.||.+.=
T Consensus 136 l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQKV 150 (233)
T ss_pred EEecCcceEeehhhh
Confidence 778999999998654
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.54 E-value=1.9e-05 Score=60.76 Aligned_cols=77 Identities=17% Similarity=0.148 Sum_probs=37.5
Q ss_pred CCCcEEEcccCcCCCCCC-----cCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCC----cccc
Q 038525 82 SNLQYINLWNNDLSGSIP-----PQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSD----SQFR 143 (165)
Q Consensus 82 ~~L~~L~ls~N~l~~~~p-----~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~----~~p~ 143 (165)
+.|+++..++|++. ..+ ..|...+.|+.+.++.|.|. .+..++.|+.|||.+|.++. .+..
T Consensus 157 ~~Lrv~i~~rNrle-n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLE-NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeeccccc-cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 44555555555543 111 12333445555555555544 34455566666666665532 1223
Q ss_pred cccCCCCCcEEEccCC
Q 038525 144 FVIPYLRLSVQCVWTC 159 (165)
Q Consensus 144 ~~~~l~~L~~L~l~~n 159 (165)
.+..+++|+.+++++|
T Consensus 236 aL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDC 251 (382)
T ss_pred Hhcccchheeeccccc
Confidence 4455555666665555
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.00076 Score=53.76 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=14.7
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNN 92 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N 92 (165)
+|++|.++++.--..+ |..+. ++|++|++++|
T Consensus 73 sLtsL~Lsnc~nLtsL-P~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLTTL-PGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcccC-Cchhh--hhhhheEccCc
Confidence 4555555553222233 43331 35556666555
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.23 E-value=0.0017 Score=51.77 Aligned_cols=28 Identities=14% Similarity=0.378 Sum_probs=14.3
Q ss_pred CeeEEEeecC-CCCcccCCcccCCCCCCcEEEcccCc
Q 038525 58 GWYHIELVEC-SIKGELGSLNFSCFSNLQYINLWNND 93 (165)
Q Consensus 58 ~L~~L~ls~n-~l~~~~~p~~~~~l~~L~~L~ls~N~ 93 (165)
+|++|++++| .+. .+ |. +|+.|+++.+.
T Consensus 95 nLe~L~Ls~Cs~L~-sL-P~------sLe~L~L~~n~ 123 (426)
T PRK15386 95 GLEKLTVCHCPEIS-GL-PE------SVRSLEIKGSA 123 (426)
T ss_pred hhhheEccCccccc-cc-cc------ccceEEeCCCC
Confidence 4556666666 333 34 32 34555555544
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.19 E-value=0.0017 Score=42.91 Aligned_cols=95 Identities=18% Similarity=0.124 Sum_probs=35.8
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
+++.+.+.. .+...- ...|.++++|+.+.+.++ +...-...|..+..++.+.+..+... .|..+++++.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~-~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIG-ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeC-hhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccC
Confidence 444555543 333222 445555555555555553 33222334445545555555442111 44455555555554
Q ss_pred CCCCCCcccccccCCCCCcEEEcc
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVW 157 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~ 157 (165)
.+ +...-...|.+. .|+.+.+.
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-T
T ss_pred cc-ccEEchhhhcCC-CceEEEEC
Confidence 43 332223344443 55555544
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=9.8e-06 Score=60.91 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=53.9
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~ 131 (165)
+++.|+..++.+.. + .....++.|++|.||-|.|+..- .+..+++|+.|.|..|.|. -+.++++|+.|+
T Consensus 20 ~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 34456666666552 2 13345666666666666666322 2455666666666666665 345667777777
Q ss_pred ccCCCCCCcccc-----cccCCCCCcEEE
Q 038525 132 LSHNNLSDSQFR-----FVIPYLRLSVQC 155 (165)
Q Consensus 132 ls~N~l~~~~p~-----~~~~l~~L~~L~ 155 (165)
|..|...|.-+. .+.-+++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777776655443 234455665554
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=7.8e-05 Score=56.71 Aligned_cols=80 Identities=24% Similarity=0.266 Sum_probs=60.2
Q ss_pred CeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCE
Q 038525 58 GWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQN 129 (165)
Q Consensus 58 ~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~ 129 (165)
.++++|+..|.++. ++ ...+..++.|+.|+++.|.+...+...-....+|+++.+.+..+. .+..++.++.
T Consensus 72 ~v~elDL~~N~iSdWseI-~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEI-GAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHH-HHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 67799999999874 23 344578899999999999998444322245678999999888776 5667888888
Q ss_pred EeccCCCCC
Q 038525 130 LDLSHNNLS 138 (165)
Q Consensus 130 L~ls~N~l~ 138 (165)
|++|.|++.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 888888543
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.14 E-value=0.0001 Score=62.57 Aligned_cols=103 Identities=12% Similarity=0.189 Sum_probs=75.2
Q ss_pred CeeEEEeecCCCCc-ccCCccc-CCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIKG-ELGSLNF-SCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~~-~~~p~~~-~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ 131 (165)
+|++|++++..... .. |..+ ..+|.|+.|.+++=.+.. .+-....++++|..||+|+..++ .++.+++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W-~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGW-PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccH-HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 57899998866431 22 3333 357999999999877642 22344567899999999999998 778888898888
Q ss_pred ccCCCCCC-cccccccCCCCCcEEEccCCcc
Q 038525 132 LSHNNLSD-SQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 132 ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+.+=.+.. ..-..+.++++|++||+|..+.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 87766652 1123677899999999998654
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.98 E-value=0.00023 Score=32.60 Aligned_cols=19 Identities=42% Similarity=0.822 Sum_probs=9.8
Q ss_pred CcEEEcccCcCCCCCCcCcC
Q 038525 84 LQYINLWNNDLSGSIPPQIG 103 (165)
Q Consensus 84 L~~L~ls~N~l~~~~p~~~~ 103 (165)
|++||+++|+++ .+|+.|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.87 E-value=0.0038 Score=41.24 Aligned_cols=100 Identities=14% Similarity=0.166 Sum_probs=56.2
Q ss_pred CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----C
Q 038525 46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----E 120 (165)
Q Consensus 46 ~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~ 120 (165)
.+....|...+ +++.+.+.++ +...- ...|..++.++.+.+.. .+.......|..+.+++.+++..+ ++ .
T Consensus 25 ~I~~~~F~~~~-~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~ 99 (129)
T PF13306_consen 25 KIGENAFSNCT-SLKSINFPNN-LTSIG-DNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS 99 (129)
T ss_dssp EE-TTTTTT-T-T-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTT
T ss_pred EeChhhccccc-cccccccccc-ccccc-eeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhh
Confidence 34566688877 7889999886 66343 67889998999999976 444244556777999999999876 44 7
Q ss_pred CccCcCCCEEeccCCCCCCcccccccCCCCCc
Q 038525 121 IGKILLLQNLDLSHNNLSDSQFRFVIPYLRLS 152 (165)
Q Consensus 121 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 152 (165)
|.+. .++.+.+.. .+.......|.++++|+
T Consensus 100 f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 100 FSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--T--EEE-TT-B-SS----GGG------
T ss_pred hcCC-CceEEEECC-CccEECCccccccccCC
Confidence 7777 899998876 44435556777776663
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00097 Score=49.56 Aligned_cols=84 Identities=23% Similarity=0.222 Sum_probs=59.8
Q ss_pred CcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-------CCccCcCCCEEeccCCCCCCcccccc--
Q 038525 75 SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-------EIGKILLLQNLDLSHNNLSDSQFRFV-- 145 (165)
Q Consensus 75 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-------~~~~l~~L~~L~ls~N~l~~~~p~~~-- 145 (165)
..-...+..|+.+.+.+-.++ .+ ..+-.+++|+.|.++.|.+. ....+++|+++++++|++. +++++
T Consensus 36 ~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~p 111 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRP 111 (260)
T ss_pred ccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccch
Confidence 444556677888887777776 22 24556889999999999544 2345599999999999996 24444
Q ss_pred -cCCCCCcEEEccCCccC
Q 038525 146 -IPYLRLSVQCVWTCHST 162 (165)
Q Consensus 146 -~~l~~L~~L~l~~n~~~ 162 (165)
..+.+|..|++.+|..+
T Consensus 112 l~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhcchhhhhcccCCcc
Confidence 44557778888887653
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.73 E-value=0.00063 Score=31.07 Aligned_cols=22 Identities=41% Similarity=0.286 Sum_probs=17.0
Q ss_pred CCCEEeccCCCCCCcccccccCC
Q 038525 126 LLQNLDLSHNNLSDSQFRFVIPY 148 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p~~~~~l 148 (165)
+|++||+++|+++ .+|+.|.++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788999999998 788777653
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.0014 Score=50.04 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=54.5
Q ss_pred ccccccccccCCCc-----hhhhhccccCeeEEEeecCCCCcccCCccc-CCCCCCcEEEcccCcCCCCCCc-CcCCCCC
Q 038525 35 TSFTQQRLVEGQDS-----SQCFRSLQLGWYHIELVECSIKGELGSLNF-SCFSNLQYINLWNNDLSGSIPP-QIGSLLK 107 (165)
Q Consensus 35 ~~l~~~~~~~~~~~-----~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~ 107 (165)
+.++..++..+.+. ...++++| .++.|+++.|+++..+ . .. ....+|+.|-|.+..+...--+ ....++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP-~l~~LNls~N~L~s~I-~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLP-ALTTLNLSCNSLSSDI-K-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCc-cceEeeccCCcCCCcc-c-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 33444444444443 33467888 8999999999998544 2 22 4567899999988887644333 3456778
Q ss_pred CCEEEcCCCCC
Q 038525 108 LKYLNLRWKNL 118 (165)
Q Consensus 108 L~~L~ls~n~l 118 (165)
++.|.++.|.+
T Consensus 148 vtelHmS~N~~ 158 (418)
T KOG2982|consen 148 VTELHMSDNSL 158 (418)
T ss_pred hhhhhhccchh
Confidence 88888888744
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.55 E-value=0.0026 Score=48.08 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=17.5
Q ss_pred cCcCCCEEeccCCCCCC----cccccccCCCCCcEEEccCC
Q 038525 123 KILLLQNLDLSHNNLSD----SQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~l~~n 159 (165)
.+.+|+.||+.+|-++- .+...+..++.|+.|.+.+|
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 34455555555555531 11223444555555555544
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.00023 Score=54.25 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=23.3
Q ss_pred cCcCCCEEeccCCCC-CCcccccccCCCCCcEEEccCCcc
Q 038525 123 KILLLQNLDLSHNNL-SDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l-~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++|.+|||++|.. +...-..|.+++.|++|.++.|+-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 466777777776542 322334556666777777776653
No 66
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.87 E-value=0.0051 Score=26.17 Aligned_cols=13 Identities=46% Similarity=0.664 Sum_probs=5.0
Q ss_pred CCcEEEcccCcCC
Q 038525 83 NLQYINLWNNDLS 95 (165)
Q Consensus 83 ~L~~L~ls~N~l~ 95 (165)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3455555555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=0.00035 Score=52.79 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccc--cccCCCCCcEEE
Q 038525 81 FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFR--FVIPYLRLSVQC 155 (165)
Q Consensus 81 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~ 155 (165)
+.+.++|+.-++.++.+ .-...|+.|++|.|+-|+|+ .+..|++|+.|.|..|.|. .+.+ -+.++++|+.|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 44567777878877732 23457999999999999998 7889999999999999997 4443 357889999999
Q ss_pred ccCCc
Q 038525 156 VWTCH 160 (165)
Q Consensus 156 l~~n~ 160 (165)
|..|.
T Consensus 95 L~ENP 99 (388)
T KOG2123|consen 95 LDENP 99 (388)
T ss_pred hccCC
Confidence 98874
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.40 E-value=0.025 Score=42.91 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=68.2
Q ss_pred cccCeeEEEeecCCCCcccCCcc----cCCCCCCcEEEcccCcCCCCCCcCc-------------CCCCCCCEEEcCCCC
Q 038525 55 LQLGWYHIELVECSIKGELGSLN----FSCFSNLQYINLWNNDLSGSIPPQI-------------GSLLKLKYLNLRWKN 117 (165)
Q Consensus 55 l~~~L~~L~ls~n~l~~~~~p~~----~~~l~~L~~L~ls~N~l~~~~p~~~-------------~~l~~L~~L~ls~n~ 117 (165)
.| +++..++|.|.+.... |.. ++.-+.|+.|.+++|.+..+-...+ ..-+.|++.+...|+
T Consensus 91 cp-~l~~v~LSDNAfg~~~-~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 91 CP-RLQKVDLSDNAFGSEF-PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred CC-cceeeeccccccCccc-chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34 6778888888887665 443 3455778888888887762222222 234678888888888
Q ss_pred CC---------CCccCcCCCEEeccCCCCCCcccc--------cccCCCCCcEEEccCCccC
Q 038525 118 LT---------EIGKILLLQNLDLSHNNLSDSQFR--------FVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 118 l~---------~~~~l~~L~~L~ls~N~l~~~~p~--------~~~~l~~L~~L~l~~n~~~ 162 (165)
+. .+..-..|..+.+..|.|. |+ .+..+.+|++|++++|-.+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 76 2333356788888888765 33 2345678888888888653
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.23 E-value=0.016 Score=27.24 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=13.9
Q ss_pred CCCCcEEEcccCcCCCCCCcC
Q 038525 81 FSNLQYINLWNNDLSGSIPPQ 101 (165)
Q Consensus 81 l~~L~~L~ls~N~l~~~~p~~ 101 (165)
+++|+.|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 457788888888887 55543
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.23 E-value=0.016 Score=27.24 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=13.9
Q ss_pred CCCCcEEEcccCcCCCCCCcC
Q 038525 81 FSNLQYINLWNNDLSGSIPPQ 101 (165)
Q Consensus 81 l~~L~~L~ls~N~l~~~~p~~ 101 (165)
+++|+.|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 457788888888887 55543
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.74 E-value=0.0004 Score=51.22 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=52.4
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
..+.||++.|++. -+ ...|..++.+..||++.|++. ..|..+++...+..+++..|..+ +++..+.++++++-
T Consensus 43 r~tvld~~s~r~v-n~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 3557777777765 34 556677777777777777777 67777777666666666666555 56666666666666
Q ss_pred CCCCC
Q 038525 134 HNNLS 138 (165)
Q Consensus 134 ~N~l~ 138 (165)
.|.+.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 66543
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.19 E-value=0.00069 Score=50.02 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=46.2
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT 119 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~ 119 (165)
|+.++ .+..|+++.|++. .. |.+++....++.+++..|..+ ..|.+++..+++++++..+|.+.
T Consensus 61 ~s~~t-~~~rl~~sknq~~-~~-~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 61 FSILT-RLVRLDLSKNQIK-FL-PKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hHHHH-HHHHHhccHhhHh-hC-hhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 44444 5667777777776 55 777777777777777777777 67777777777777777777766
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.95 E-value=0.051 Score=25.46 Aligned_cols=20 Identities=45% Similarity=0.358 Sum_probs=14.5
Q ss_pred CcCCCEEeccCCCCCCccccc
Q 038525 124 ILLLQNLDLSHNNLSDSQFRF 144 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~ 144 (165)
+++|+.|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888888 44543
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.95 E-value=0.051 Score=25.46 Aligned_cols=20 Identities=45% Similarity=0.358 Sum_probs=14.5
Q ss_pred CcCCCEEeccCCCCCCccccc
Q 038525 124 ILLLQNLDLSHNNLSDSQFRF 144 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~ 144 (165)
+++|+.|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888888 44543
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.021 Score=43.82 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=34.9
Q ss_pred CCCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 107 KLKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 107 ~L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.++++|++...++ -+..+.+|+.|.+.++++...+-.++.+..+|+.|+++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 4666777766666 34556666777777777666555666666667777666653
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.44 E-value=0.33 Score=22.98 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=8.8
Q ss_pred CCCcEEEcccCcCC
Q 038525 82 SNLQYINLWNNDLS 95 (165)
Q Consensus 82 ~~L~~L~ls~N~l~ 95 (165)
++|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666665
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.91 E-value=0.3 Score=23.15 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=11.7
Q ss_pred CCcEEEcccCcCCCCCCc
Q 038525 83 NLQYINLWNNDLSGSIPP 100 (165)
Q Consensus 83 ~L~~L~ls~N~l~~~~p~ 100 (165)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5677777777777 5664
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.24 E-value=0.038 Score=39.94 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=38.0
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC-CCcCcC-CCCCCCEEEcCCCC-CC-----CCccCcCCCEE
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS-IPPQIG-SLLKLKYLNLRWKN-LT-----EIGKILLLQNL 130 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~-~l~~L~~L~ls~n~-l~-----~~~~l~~L~~L 130 (165)
++.+|.++..+..+- -..+.+++.++.|.+.++.--+. --+.++ -.++|+.|++++|. |+ -+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 566777776665443 34555666666666555432110 001111 23567777777663 55 34445555555
Q ss_pred eccC
Q 038525 131 DLSH 134 (165)
Q Consensus 131 ~ls~ 134 (165)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5443
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.28 E-value=0.26 Score=22.48 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=6.4
Q ss_pred CCCcEEEcccCcCC
Q 038525 82 SNLQYINLWNNDLS 95 (165)
Q Consensus 82 ~~L~~L~ls~N~l~ 95 (165)
++|++|++++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555544
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.74 E-value=0.69 Score=22.09 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=7.6
Q ss_pred CCcEEEcccCcCC
Q 038525 83 NLQYINLWNNDLS 95 (165)
Q Consensus 83 ~L~~L~ls~N~l~ 95 (165)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4566666666554
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.15 E-value=0.41 Score=38.46 Aligned_cols=56 Identities=27% Similarity=0.269 Sum_probs=25.9
Q ss_pred CCCCCEEEcCCCC-CC-----CCc-cCcCCCEEeccCCC-CCC-cccccccCCCCCcEEEccCCc
Q 038525 105 LLKLKYLNLRWKN-LT-----EIG-KILLLQNLDLSHNN-LSD-SQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 105 l~~L~~L~ls~n~-l~-----~~~-~l~~L~~L~ls~N~-l~~-~~p~~~~~l~~L~~L~l~~n~ 160 (165)
+++|+.+++++.. ++ .+. .+++|+.|.+.++. ++. .+-.....++.|+.|+++.|.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555566665555 33 111 24556666544444 221 111222345556666666554
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.11 E-value=0.28 Score=35.60 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=61.7
Q ss_pred EEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCC-C-----CC-ccCcCCCEEeccC
Q 038525 62 IELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNL-T-----EI-GKILLLQNLDLSH 134 (165)
Q Consensus 62 L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l-~-----~~-~~l~~L~~L~ls~ 134 (165)
+.-++|..- .. |.....-..++.+|.++..|..+--+.+..++.++.+.+.++.- . .+ +..++|+.|++++
T Consensus 83 ~~~d~~g~~-~l-p~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsg 160 (221)
T KOG3864|consen 83 LQKDYNGYF-SL-PGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSG 160 (221)
T ss_pred hcCccccee-cC-CCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccC
Confidence 344555432 33 44434445688999999988755445667778888888777653 2 22 2457899999997
Q ss_pred CC-CCCcccccccCCCCCcEEEccC
Q 038525 135 NN-LSDSQFRFVIPYLRLSVQCVWT 158 (165)
Q Consensus 135 N~-l~~~~p~~~~~l~~L~~L~l~~ 158 (165)
|. |+..--..+..+++|+.|.+.+
T Consensus 161 C~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 161 CPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred CCeechhHHHHHHHhhhhHHHHhcC
Confidence 64 5543335677788888777765
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=70.48 E-value=2.2 Score=34.27 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=59.6
Q ss_pred ccccCeeEEEeecC-CCCccc---CCcccCCCCCCcEEEcccCc-CCCCCCcCcC-CCCCCCEEEcCCCC-CC------C
Q 038525 54 SLQLGWYHIELVEC-SIKGEL---GSLNFSCFSNLQYINLWNND-LSGSIPPQIG-SLLKLKYLNLRWKN-LT------E 120 (165)
Q Consensus 54 ~l~~~L~~L~ls~n-~l~~~~---~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~-~l~~L~~L~ls~n~-l~------~ 120 (165)
..+ .|++|+++++ ...... .......+.+|+.+++++.. ++...-..+. .+++|+.|.+.++. ++ .
T Consensus 212 ~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 212 KCP-NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hCc-hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 344 6889998873 211111 01234456888999998877 5533222232 27789999977776 66 3
Q ss_pred CccCcCCCEEeccCCCCCC--cccccccCCCCCcEEE
Q 038525 121 IGKILLLQNLDLSHNNLSD--SQFRFVIPYLRLSVQC 155 (165)
Q Consensus 121 ~~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~ 155 (165)
...++.|++|+++.+...+ .+.....++++|+.+.
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 4567889999999776531 1222234455555444
No 84
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=62.00 E-value=5.1 Score=39.58 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=18.9
Q ss_pred EeecCCCCcccCCcccCCCCCCcEEEcccCcCC
Q 038525 63 ELVECSIKGELGSLNFSCFSNLQYINLWNNDLS 95 (165)
Q Consensus 63 ~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~ 95 (165)
||++|+|+ .+++..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 35666666 332555666666666666666554
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.05 E-value=4.4 Score=33.84 Aligned_cols=62 Identities=18% Similarity=0.044 Sum_probs=27.5
Q ss_pred CeeEEEeecCCCCcccC-CcccCCCCCCcEEEcccCcCCCCCCcCcCC--CCCCCEEEcCCCCCC
Q 038525 58 GWYHIELVECSIKGELG-SLNFSCFSNLQYINLWNNDLSGSIPPQIGS--LLKLKYLNLRWKNLT 119 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~-p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~--l~~L~~L~ls~n~l~ 119 (165)
.+..+.+++|++...-. ..--...++|+.|+|++|...-....++.+ ...|++|-+.+|++.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 45566666666542100 001122355666666666221111122222 223556666666664
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.71 E-value=5.5 Score=33.28 Aligned_cols=57 Identities=28% Similarity=0.293 Sum_probs=28.7
Q ss_pred CCCCcEEEcccCcCCCCC--CcCcCCCCCCCEEEcCCC--CCC------CCccCcCCCEEeccCCCCC
Q 038525 81 FSNLQYINLWNNDLSGSI--PPQIGSLLKLKYLNLRWK--NLT------EIGKILLLQNLDLSHNNLS 138 (165)
Q Consensus 81 l~~L~~L~ls~N~l~~~~--p~~~~~l~~L~~L~ls~n--~l~------~~~~l~~L~~L~ls~N~l~ 138 (165)
.+.+..+.|++|++.... ..--...++|+.|+|++| .+. .+++ ..|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 345566666666665211 111123456666777766 222 2222 22566666666664
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=56.61 E-value=9.4 Score=17.51 Aligned_cols=12 Identities=17% Similarity=0.105 Sum_probs=7.2
Q ss_pred CCCcEEEccCCc
Q 038525 149 LRLSVQCVWTCH 160 (165)
Q Consensus 149 ~~L~~L~l~~n~ 160 (165)
++|+.|++++|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666664
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.01 E-value=12 Score=37.26 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=13.8
Q ss_pred CchhhhhccccCeeEEEeecCCCC
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIK 70 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~ 70 (165)
++...|..++ +|++|+|++|.+.
T Consensus 10 Lp~g~F~~L~-sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 10 IEEGICANLC-NLSEIDLSGNPFE 32 (2740)
T ss_pred cChHHhccCC-CceEEEeeCCccc
Confidence 3445555565 6666777666654
No 89
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=42.73 E-value=0.7 Score=37.99 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=16.2
Q ss_pred CCCEEeccCCCCCCcc----cccccCCCCCcEEEccCCc
Q 038525 126 LLQNLDLSHNNLSDSQ----FRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~----p~~~~~l~~L~~L~l~~n~ 160 (165)
.+++++++.|.++..- ++.+..+.+++.+.+++|+
T Consensus 263 ~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 263 TLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 4455555555554221 2233344455555555554
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=25.88 E-value=50 Score=27.05 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=5.2
Q ss_pred CcCCCEEeccCC
Q 038525 124 ILLLQNLDLSHN 135 (165)
Q Consensus 124 l~~L~~L~ls~N 135 (165)
++.|+.+.++++
T Consensus 371 C~~lr~lslshc 382 (483)
T KOG4341|consen 371 CPRLRVLSLSHC 382 (483)
T ss_pred CchhccCChhhh
Confidence 344444444443
Done!