Query 038525
Match_columns 165
No_of_seqs 295 out of 1660
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 20:51:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9t_B SLIT homolog 2 protein 99.8 6E-19 2.1E-23 127.9 12.3 113 47-161 47-164 (220)
2 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-18 4E-23 126.4 12.1 110 50-161 51-165 (220)
3 3m19_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 126.0 14.6 107 52-160 79-190 (251)
4 3m19_A Variable lymphocyte rec 99.8 3E-18 1E-22 126.2 14.1 116 45-162 48-168 (251)
5 1w8a_A SLIT protein; signaling 99.8 2.9E-18 1E-22 121.8 12.0 103 58-161 30-138 (192)
6 3e6j_A Variable lymphocyte rec 99.8 6.5E-18 2.2E-22 123.1 14.0 113 47-161 55-171 (229)
7 2o6s_A Variable lymphocyte rec 99.8 8.3E-18 2.8E-22 120.5 14.1 115 45-161 41-160 (208)
8 2v9t_B SLIT homolog 2 protein 99.8 6.1E-18 2.1E-22 122.6 12.5 104 58-162 33-141 (220)
9 3rfs_A Internalin B, repeat mo 99.8 1.8E-17 6.2E-22 123.5 14.4 109 50-160 103-216 (272)
10 4g8a_A TOLL-like receptor 4; l 99.8 4.2E-18 1.5E-22 138.9 11.9 112 48-161 68-185 (635)
11 4g8a_A TOLL-like receptor 4; l 99.8 6.1E-18 2.1E-22 138.0 11.7 108 54-162 49-161 (635)
12 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-17 8.8E-22 123.1 14.1 111 49-161 98-213 (285)
13 2o6q_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 121.9 14.4 110 49-160 78-192 (270)
14 2wfh_A SLIT homolog 2 protein 99.7 1.8E-17 6E-22 118.0 12.2 102 58-161 32-138 (193)
15 3rgz_A Protein brassinosteroid 99.7 4.2E-18 1.4E-22 143.2 10.3 81 81-161 631-716 (768)
16 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-17 5.1E-22 120.6 11.7 105 58-162 33-142 (220)
17 3rfs_A Internalin B, repeat mo 99.7 4.2E-17 1.4E-21 121.5 14.4 127 34-162 62-194 (272)
18 2o6r_A Variable lymphocyte rec 99.7 4.7E-17 1.6E-21 113.8 13.8 103 58-161 29-136 (177)
19 3e6j_A Variable lymphocyte rec 99.7 3.9E-17 1.3E-21 118.9 13.0 103 58-162 41-148 (229)
20 4fcg_A Uncharacterized protein 99.7 1.9E-17 6.5E-22 126.7 11.4 38 122-159 250-287 (328)
21 2o6q_A Variable lymphocyte rec 99.7 9.1E-17 3.1E-21 119.5 14.6 127 33-161 83-217 (270)
22 2z62_A TOLL-like receptor 4, v 99.7 4.1E-17 1.4E-21 121.5 11.9 124 37-162 30-162 (276)
23 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-16 4.1E-21 119.5 14.2 127 33-161 54-189 (285)
24 1ogq_A PGIP-2, polygalacturona 99.7 5.3E-18 1.8E-22 128.8 6.7 109 51-161 71-186 (313)
25 1ogq_A PGIP-2, polygalacturona 99.7 6E-18 2E-22 128.5 6.9 105 52-159 97-207 (313)
26 3vq2_A TLR4, TOLL-like recepto 99.7 5.2E-17 1.8E-21 132.7 12.7 125 36-162 33-166 (606)
27 4ezg_A Putative uncharacterize 99.7 3.1E-17 1.1E-21 116.7 10.0 107 51-161 83-193 (197)
28 1p9a_G Platelet glycoprotein I 99.7 1.2E-16 3.9E-21 120.4 13.6 101 58-160 78-183 (290)
29 4fcg_A Uncharacterized protein 99.7 4.2E-17 1.4E-21 124.7 11.0 128 31-161 123-265 (328)
30 3o6n_A APL1; leucine-rich repe 99.7 6.5E-17 2.2E-21 125.9 11.8 117 44-162 57-178 (390)
31 3v47_A TOLL-like receptor 5B a 99.7 5.4E-17 1.8E-21 128.3 11.3 124 36-161 276-407 (455)
32 2xot_A Amphoterin-induced prot 99.7 6.5E-17 2.2E-21 125.0 11.3 113 48-162 55-176 (361)
33 3g39_A Variable lymphocyte rec 99.7 1.7E-16 5.7E-21 110.7 11.9 97 61-161 13-114 (170)
34 3v47_A TOLL-like receptor 5B a 99.7 9.1E-17 3.1E-21 127.0 11.9 125 37-162 32-167 (455)
35 2o6s_A Variable lymphocyte rec 99.7 2.7E-16 9.3E-21 112.5 13.3 104 58-162 29-137 (208)
36 2z66_A Variable lymphocyte rec 99.7 9.8E-17 3.4E-21 121.0 11.5 110 50-161 144-260 (306)
37 3rgz_A Protein brassinosteroid 99.7 4.2E-17 1.4E-21 137.1 10.3 109 51-161 437-550 (768)
38 3oja_B Anopheles plasmodium-re 99.7 1E-16 3.5E-21 131.3 11.8 116 45-162 64-184 (597)
39 1p9a_G Platelet glycoprotein I 99.7 3.9E-16 1.3E-20 117.5 14.0 125 34-161 76-207 (290)
40 2xot_A Amphoterin-induced prot 99.7 2E-16 6.9E-21 122.3 11.8 104 58-162 40-149 (361)
41 2r9u_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 109.3 12.1 96 61-160 16-116 (174)
42 2id5_A Lingo-1, leucine rich r 99.7 3.1E-16 1E-20 124.9 11.6 112 48-161 48-164 (477)
43 3vq2_A TLR4, TOLL-like recepto 99.7 1.6E-16 5.4E-21 129.8 10.1 109 51-161 419-533 (606)
44 2z66_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 119.1 10.2 111 50-162 120-236 (306)
45 2z63_A TOLL-like receptor 4, v 99.7 2.9E-16 9.8E-21 127.1 11.5 124 37-162 30-162 (570)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.5E-16 1.2E-20 127.1 11.8 103 58-161 53-158 (562)
47 2ell_A Acidic leucine-rich nuc 99.7 1.9E-16 6.6E-21 109.7 8.5 107 52-162 45-160 (168)
48 1ziw_A TOLL-like receptor 3; i 99.7 6.5E-16 2.2E-20 127.8 12.8 113 47-161 40-157 (680)
49 2je0_A Acidic leucine-rich nuc 99.7 3.5E-16 1.2E-20 106.4 9.0 101 58-161 18-125 (149)
50 2z62_A TOLL-like receptor 4, v 99.7 5.8E-16 2E-20 115.2 11.0 119 31-151 48-175 (276)
51 4ezg_A Putative uncharacterize 99.7 4.4E-16 1.5E-20 110.7 9.6 125 32-162 41-172 (197)
52 3t6q_A CD180 antigen; protein- 99.7 5.5E-16 1.9E-20 126.6 11.3 112 48-161 49-165 (606)
53 2id5_A Lingo-1, leucine rich r 99.7 8.6E-16 2.9E-20 122.3 11.9 129 31-161 52-188 (477)
54 2xwt_C Thyrotropin receptor; s 99.7 3.1E-16 1.1E-20 114.5 8.6 104 51-159 75-189 (239)
55 2je0_A Acidic leucine-rich nuc 99.7 1.6E-16 5.3E-21 108.1 6.6 104 51-158 37-149 (149)
56 4b8c_D Glucose-repressible alc 99.7 2.6E-16 8.9E-21 131.8 8.9 111 47-162 215-329 (727)
57 3zyi_A Leucine-rich repeat-con 99.7 1.4E-15 4.7E-20 120.7 12.5 126 33-160 97-253 (452)
58 3t6q_A CD180 antigen; protein- 99.6 1.1E-15 3.8E-20 124.8 12.2 106 56-162 32-142 (606)
59 3zyi_A Leucine-rich repeat-con 99.6 1.2E-15 4.2E-20 120.9 11.8 67 51-119 94-160 (452)
60 4eco_A Uncharacterized protein 99.6 4.9E-16 1.7E-20 128.3 9.9 109 51-162 201-343 (636)
61 3j0a_A TOLL-like receptor 5; m 99.6 8.7E-16 3E-20 130.3 11.0 113 48-161 40-160 (844)
62 1wwl_A Monocyte differentiatio 99.6 6.7E-16 2.3E-20 117.0 9.3 128 32-161 118-265 (312)
63 3oja_B Anopheles plasmodium-re 99.6 3E-15 1E-19 122.6 13.6 130 30-161 94-290 (597)
64 1dce_A Protein (RAB geranylger 99.6 2.6E-16 8.8E-21 128.5 7.0 101 58-162 442-546 (567)
65 2z80_A TOLL-like receptor 2, v 99.6 5E-16 1.7E-20 119.4 8.2 99 59-159 54-159 (353)
66 3zyj_A Leucine-rich repeat-con 99.6 2.3E-15 7.8E-20 119.0 12.1 62 33-96 86-150 (440)
67 2ell_A Acidic leucine-rich nuc 99.6 9.5E-16 3.3E-20 106.2 8.8 102 58-162 25-133 (168)
68 3zyj_A Leucine-rich repeat-con 99.6 2E-15 6.8E-20 119.4 11.6 110 49-160 81-196 (440)
69 2z81_A CD282 antigen, TOLL-lik 99.6 5.5E-16 1.9E-20 125.2 8.3 111 49-161 43-160 (549)
70 4glp_A Monocyte differentiatio 99.6 9.5E-16 3.3E-20 116.0 9.1 129 32-162 114-264 (310)
71 2z63_A TOLL-like receptor 4, v 99.6 7.8E-16 2.7E-20 124.6 8.8 110 50-161 415-530 (570)
72 3o6n_A APL1; leucine-rich repe 99.6 6.4E-15 2.2E-19 114.6 13.4 128 32-161 90-284 (390)
73 1xku_A Decorin; proteoglycan, 99.6 4.4E-15 1.5E-19 113.1 12.0 103 58-161 193-305 (330)
74 3oja_A Leucine-rich immune mol 99.6 9.9E-16 3.4E-20 122.9 8.8 101 58-160 121-225 (487)
75 2wfh_A SLIT homolog 2 protein 99.6 4.1E-15 1.4E-19 105.7 10.9 98 60-162 13-115 (193)
76 2ft3_A Biglycan; proteoglycan, 99.6 5.5E-15 1.9E-19 112.7 12.1 103 58-161 55-159 (332)
77 3j0a_A TOLL-like receptor 5; m 99.6 1.1E-15 3.6E-20 129.8 8.8 131 28-160 41-185 (844)
78 1w8a_A SLIT protein; signaling 99.6 6.2E-15 2.1E-19 104.5 11.4 90 51-142 49-143 (192)
79 1xku_A Decorin; proteoglycan, 99.6 6.4E-15 2.2E-19 112.2 12.3 102 58-160 53-156 (330)
80 2z7x_B TOLL-like receptor 1, v 99.6 1.4E-15 4.8E-20 122.2 9.0 103 58-161 22-127 (520)
81 3o53_A Protein LRIM1, AGAP0063 99.6 1.6E-15 5.4E-20 115.2 8.7 105 52-161 140-249 (317)
82 1wwl_A Monocyte differentiatio 99.6 8.1E-16 2.8E-20 116.6 7.1 106 53-161 118-240 (312)
83 1ziw_A TOLL-like receptor 3; i 99.6 3.2E-15 1.1E-19 123.6 10.7 103 58-161 26-133 (680)
84 2z80_A TOLL-like receptor 2, v 99.6 4E-15 1.4E-19 114.3 10.6 123 37-161 54-186 (353)
85 2z7x_B TOLL-like receptor 1, v 99.6 1E-14 3.4E-19 117.2 13.0 105 53-160 345-479 (520)
86 2xwt_C Thyrotropin receptor; s 99.6 4.3E-15 1.5E-19 108.4 9.8 112 48-161 47-168 (239)
87 1h6t_A Internalin B; cell adhe 99.6 1.2E-14 4.2E-19 109.3 12.5 102 52-161 86-190 (291)
88 2z81_A CD282 antigen, TOLL-lik 99.6 3.1E-15 1.1E-19 120.8 9.6 102 58-160 27-134 (549)
89 1xeu_A Internalin C; cellular 99.6 2.2E-14 7.4E-19 106.5 12.9 101 52-161 59-162 (263)
90 3o53_A Protein LRIM1, AGAP0063 99.6 7.5E-15 2.6E-19 111.5 10.3 124 36-162 100-227 (317)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.1E-14 7E-19 116.7 13.3 106 52-160 373-484 (562)
92 3g39_A Variable lymphocyte rec 99.6 2E-14 6.7E-19 100.1 11.2 83 58-141 31-118 (170)
93 1h6u_A Internalin H; cell adhe 99.6 2.6E-14 8.9E-19 108.2 12.8 101 52-160 81-184 (308)
94 4ecn_A Leucine-rich repeat pro 99.6 3.1E-15 1.1E-19 127.2 8.3 108 51-161 443-585 (876)
95 3oja_A Leucine-rich immune mol 99.6 9.1E-15 3.1E-19 117.3 10.5 122 36-162 121-250 (487)
96 1h6u_A Internalin H; cell adhe 99.6 3.8E-14 1.3E-18 107.4 13.0 96 58-160 64-162 (308)
97 2o6r_A Variable lymphocyte rec 99.6 2.8E-14 9.6E-19 99.6 11.2 95 46-142 42-141 (177)
98 2ft3_A Biglycan; proteoglycan, 99.6 1.4E-14 4.9E-19 110.4 10.6 103 58-161 194-306 (332)
99 1a9n_A U2A', U2A'; complex (nu 99.6 1E-14 3.4E-19 101.9 8.8 100 58-161 43-152 (176)
100 1h6t_A Internalin B; cell adhe 99.6 4E-14 1.4E-18 106.5 12.4 121 34-162 45-169 (291)
101 4fmz_A Internalin; leucine ric 99.6 2.9E-14 1E-18 109.0 11.6 104 52-161 217-323 (347)
102 1a9n_A U2A', U2A'; complex (nu 99.6 5E-15 1.7E-19 103.5 6.6 103 53-162 16-126 (176)
103 4eco_A Uncharacterized protein 99.6 3.3E-14 1.1E-18 117.3 12.4 112 47-161 448-578 (636)
104 1xeu_A Internalin C; cellular 99.6 3.3E-14 1.1E-18 105.5 11.1 119 34-161 62-184 (263)
105 4ecn_A Leucine-rich repeat pro 99.6 3.8E-15 1.3E-19 126.7 6.6 131 27-161 481-631 (876)
106 1m9s_A Internalin B; cell inva 99.5 5.8E-14 2E-18 115.4 13.0 102 52-161 83-187 (605)
107 2ifg_A High affinity nerve gro 99.5 2.7E-14 9.2E-19 109.4 10.1 97 61-161 12-115 (347)
108 4glp_A Monocyte differentiatio 99.5 1.1E-14 3.6E-19 110.3 7.4 107 53-162 114-237 (310)
109 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 96.9 11.0 82 58-140 34-120 (174)
110 1m9s_A Internalin B; cell inva 99.5 1.2E-13 4E-18 113.6 12.3 121 34-162 42-166 (605)
111 4fmz_A Internalin; leucine ric 99.5 9.8E-14 3.4E-18 106.1 10.5 121 34-162 220-346 (347)
112 4b8c_D Glucose-repressible alc 99.5 3.1E-15 1.1E-19 125.2 1.9 111 31-146 220-337 (727)
113 1o6v_A Internalin A; bacterial 99.5 1.5E-13 5.2E-18 109.3 10.9 101 52-160 261-364 (466)
114 3bz5_A Internalin-J, INLJ; leu 99.5 5.1E-13 1.7E-17 106.4 13.1 97 52-159 60-158 (457)
115 3bz5_A Internalin-J, INLJ; leu 99.5 5.6E-13 1.9E-17 106.2 13.3 78 78-161 166-245 (457)
116 1o6v_A Internalin A; bacterial 99.5 3.9E-13 1.3E-17 106.9 12.2 96 58-160 288-386 (466)
117 1dce_A Protein (RAB geranylger 99.5 2E-13 6.8E-18 111.5 10.3 100 52-156 459-567 (567)
118 1ds9_A Outer arm dynein; leuci 99.5 9.2E-16 3.2E-20 109.1 -3.5 106 51-161 43-152 (198)
119 2ca6_A RAN GTPase-activating p 99.4 2E-13 7E-18 106.0 6.2 126 35-162 159-316 (386)
120 3cvr_A Invasion plasmid antige 99.4 4.7E-12 1.6E-16 103.4 13.0 92 58-162 101-193 (571)
121 2ast_B S-phase kinase-associat 99.4 5.6E-14 1.9E-18 106.9 0.9 62 53-116 115-178 (336)
122 2ifg_A High affinity nerve gro 99.4 1.9E-12 6.5E-17 99.1 9.1 85 52-139 27-117 (347)
123 4ay9_X Follicle-stimulating ho 99.4 1.5E-12 5.2E-17 100.0 8.3 113 48-161 46-166 (350)
124 3cvr_A Invasion plasmid antige 99.4 6.2E-12 2.1E-16 102.7 11.8 95 58-162 141-243 (571)
125 4ay9_X Follicle-stimulating ho 99.4 2.9E-12 1E-16 98.4 9.2 101 58-159 31-138 (350)
126 2ca6_A RAN GTPase-activating p 99.3 2.2E-13 7.7E-18 105.8 2.0 103 58-161 160-286 (386)
127 1jl5_A Outer protein YOPM; leu 99.3 7E-11 2.4E-15 94.0 15.7 76 82-161 131-207 (454)
128 3g06_A SSPH2 (leucine-rich rep 99.3 2.9E-11 9.8E-16 99.7 13.6 75 82-161 221-296 (622)
129 2ast_B S-phase kinase-associat 99.3 7E-13 2.4E-17 100.8 3.2 102 58-160 94-206 (336)
130 1jl5_A Outer protein YOPM; leu 99.3 4E-11 1.4E-15 95.4 13.4 98 58-161 132-249 (454)
131 3goz_A Leucine-rich repeat-con 99.3 4.6E-13 1.6E-17 103.3 0.7 104 58-162 81-209 (362)
132 1ds9_A Outer arm dynein; leuci 99.3 1.6E-14 5.4E-19 102.7 -7.9 100 58-162 19-128 (198)
133 3goz_A Leucine-rich repeat-con 99.2 1.3E-12 4.6E-17 100.7 1.8 112 50-162 44-180 (362)
134 3g06_A SSPH2 (leucine-rich rep 99.2 1.4E-10 4.9E-15 95.5 12.7 72 58-138 82-154 (622)
135 1z7x_W Ribonuclease inhibitor; 99.2 1.1E-12 3.7E-17 103.7 -0.8 106 55-162 283-411 (461)
136 1z7x_W Ribonuclease inhibitor; 99.2 4.8E-12 1.6E-16 100.0 1.7 103 58-161 171-296 (461)
137 3un9_A NLR family member X1; l 99.1 1.2E-11 4.2E-16 96.1 1.2 125 36-162 102-252 (372)
138 3sb4_A Hypothetical leucine ri 99.1 1.1E-09 3.7E-14 83.4 10.4 79 81-161 225-309 (329)
139 3sb4_A Hypothetical leucine ri 99.0 1.4E-09 4.7E-14 82.8 8.4 98 55-156 225-328 (329)
140 3un9_A NLR family member X1; l 98.9 4.7E-11 1.6E-15 92.8 -2.3 104 58-162 102-224 (372)
141 1io0_A Tropomodulin; LRR prote 98.9 3.9E-10 1.3E-14 79.3 1.5 108 52-161 32-163 (185)
142 3rw6_A Nuclear RNA export fact 98.8 2.5E-09 8.7E-14 79.4 3.7 78 79-156 167-258 (267)
143 3ogk_B Coronatine-insensitive 98.8 6.8E-10 2.3E-14 90.1 -0.4 85 78-162 432-526 (592)
144 3ogk_B Coronatine-insensitive 98.7 7.2E-09 2.5E-13 84.1 2.5 20 141-160 285-304 (592)
145 3rw6_A Nuclear RNA export fact 98.6 2.1E-08 7.2E-13 74.5 3.6 75 53-131 167-257 (267)
146 2p1m_B Transport inhibitor res 98.5 8.4E-09 2.9E-13 83.7 -0.8 83 78-161 428-518 (594)
147 4fdw_A Leucine rich hypothetic 98.5 1.3E-06 4.5E-11 68.4 10.7 106 48-160 241-356 (401)
148 2p1m_B Transport inhibitor res 98.4 4.2E-08 1.4E-12 79.6 1.2 101 58-159 131-245 (594)
149 1io0_A Tropomodulin; LRR prote 98.4 1.3E-07 4.5E-12 66.3 2.8 87 75-161 29-135 (185)
150 3e4g_A ATP synthase subunit S, 98.4 2.3E-07 7.9E-12 64.6 3.8 78 58-136 62-150 (176)
151 4fdw_A Leucine rich hypothetic 98.3 3.8E-06 1.3E-10 65.8 9.6 111 46-160 261-381 (401)
152 2ra8_A Uncharacterized protein 98.3 2.4E-07 8.1E-12 71.7 2.6 103 58-161 194-319 (362)
153 3e4g_A ATP synthase subunit S, 98.2 5.9E-07 2E-11 62.6 2.5 87 75-161 54-151 (176)
154 2ra8_A Uncharacterized protein 98.0 3.9E-06 1.3E-10 64.9 3.1 106 51-161 167-291 (362)
155 4gt6_A Cell surface protein; l 97.8 0.00013 4.3E-09 56.6 9.9 105 50-160 259-368 (394)
156 4fs7_A Uncharacterized protein 97.8 9.3E-05 3.2E-09 57.3 8.0 103 49-159 269-376 (394)
157 3rfe_A Platelet glycoprotein I 97.7 0.00012 4E-09 48.3 6.6 56 61-119 12-68 (130)
158 4h09_A Hypothetical leucine ri 97.6 0.00025 8.6E-09 54.4 8.5 96 58-157 241-341 (379)
159 4fs7_A Uncharacterized protein 97.6 0.0003 1E-08 54.5 8.1 99 48-153 289-392 (394)
160 1pgv_A TMD-1, tropomodulin TMD 97.5 3.6E-05 1.2E-09 54.5 2.2 102 58-160 42-168 (197)
161 4gt6_A Cell surface protein; l 97.3 0.00033 1.1E-08 54.3 5.9 107 47-161 279-390 (394)
162 3rfe_A Platelet glycoprotein I 97.3 0.00037 1.3E-08 45.8 4.7 41 54-95 28-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.1 0.0002 6.9E-09 50.6 2.3 83 78-160 37-137 (197)
164 4h09_A Hypothetical leucine ri 97.1 0.0032 1.1E-07 48.2 9.2 99 58-159 218-320 (379)
165 2lz0_A Uncharacterized protein 67.3 14 0.00049 22.4 5.1 39 75-114 13-51 (100)
166 2lz0_A Uncharacterized protein 60.5 18 0.00063 21.9 4.7 44 92-135 6-53 (100)
No 1
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=6e-19 Score=127.91 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=97.8
Q ss_pred CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI 121 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~ 121 (165)
+++..|..++ +|++|++++|.+++.. |..|.++++|++|++++|.+++..+..|..+++|++|++++|+++ .|
T Consensus 47 i~~~~~~~l~-~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 47 IPPGAFSPYK-KLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp ECTTSSTTCT-TCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCHhHhhCCC-CCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence 3555677777 8999999999999776 889999999999999999999555556788999999999999988 67
Q ss_pred ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
..+++|+.|++++|.+++..+..|..+++|+.|++++|..
T Consensus 125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8889999999999999977777899999999999999974
No 2
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=126.40 Aligned_cols=110 Identities=20% Similarity=0.104 Sum_probs=100.5
Q ss_pred hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525 50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI 124 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l 124 (165)
..|..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+..+
T Consensus 51 ~~~~~l~-~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 51 GIFKKLP-QLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp CCGGGCT-TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred hhhccCC-CCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence 4477788 8999999999999665 778999999999999999999777778999999999999999998 68889
Q ss_pred cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|+.|++++|.+++..|..|..+++|+.|++++|..
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9999999999999988899999999999999999975
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=3.3e-18 Score=126.04 Aligned_cols=107 Identities=22% Similarity=0.197 Sum_probs=52.0
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILL 126 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~ 126 (165)
+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++ .++.+++
T Consensus 79 ~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLT-ELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hccCC-cCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 33344 4445555555444332 344444555555555555554333333444555555555555544 2444555
Q ss_pred CCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 127 LQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 127 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5555555555554444445555555555555554
No 4
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=3e-18 Score=126.25 Aligned_cols=116 Identities=20% Similarity=0.142 Sum_probs=102.3
Q ss_pred CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525 45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----- 119 (165)
Q Consensus 45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----- 119 (165)
..+++..+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 48 ~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 125 (251)
T 3m19_A 48 ATLSDATFRGLT-KLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG 125 (251)
T ss_dssp CCCCTTTTTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCHhHhcCcc-cCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChh
Confidence 334555677888 8999999999999766 888999999999999999999777778899999999999999998
Q ss_pred CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 120 EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 120 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
.+..+++|+.|++++|.+++..+..|..+++|++|++++|+..
T Consensus 126 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence 4788999999999999999777778999999999999999863
No 5
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=2.9e-18 Score=121.77 Aligned_cols=103 Identities=17% Similarity=0.067 Sum_probs=94.9
Q ss_pred CeeEEEeecCCCCcccCCc-ccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIKGELGSL-NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ 131 (165)
++++|++++|.+.+.. +. .|+.+++|++|++++|.+++..|..|..+++|++|++++|+++ .+.++++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBC-CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccC-CccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 5679999999998654 43 4899999999999999999888999999999999999999998 588999999999
Q ss_pred ccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 132 LSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 132 ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++|++++..|..+..+++|++|++++|..
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 999999988899999999999999999975
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=6.5e-18 Score=123.09 Aligned_cols=113 Identities=19% Similarity=0.157 Sum_probs=90.8
Q ss_pred CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCc
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIG 122 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~ 122 (165)
+++..|..++ +|++|++++|++.+.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+.
T Consensus 55 ~~~~~~~~l~-~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 132 (229)
T 3e6j_A 55 LEPGVFDSLI-NLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIE 132 (229)
T ss_dssp CCTTTTTTCT-TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGG
T ss_pred cCHHHhhCcc-CCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccc
Confidence 3455567777 7888999999887443 666788888999999999888666666788888999999988887 567
Q ss_pred cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++|++|++++|++++..+..+..+++|+.|++++|..
T Consensus 133 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 888899999999998866666788888999999988874
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=8.3e-18 Score=120.46 Aligned_cols=115 Identities=20% Similarity=0.163 Sum_probs=98.9
Q ss_pred CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525 45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----- 119 (165)
Q Consensus 45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----- 119 (165)
..++...+..++ +|++|++++|++++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 41 ~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 41 KSLPNGVFDELT-SLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDG 118 (208)
T ss_dssp CCCCTTTTTTCT-TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCChhhhcccc-cCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence 344566677778 8999999999999554 667899999999999999999666666889999999999999998
Q ss_pred CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 120 EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|..
T Consensus 119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 478899999999999999977666789999999999999964
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.1e-18 Score=122.58 Aligned_cols=104 Identities=23% Similarity=0.200 Sum_probs=96.7
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .|.++++|+.|++
T Consensus 33 ~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 6779999999999665 778999999999999999999888999999999999999999998 4788999999999
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++|.+++..|..|..+++|++|++++|+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 141 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence 999999888999999999999999999864
No 9
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.76 E-value=1.8e-17 Score=123.46 Aligned_cols=109 Identities=23% Similarity=0.252 Sum_probs=65.4
Q ss_pred hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525 50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI 124 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l 124 (165)
..+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..|..++.+++|+.|++++|+++ .++.+
T Consensus 103 ~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 103 GVFDKLT-NLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp TTTTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hHhcCCc-CCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 3344455 5666666666666443 445566666666666666666444444556666666666666665 24556
Q ss_pred cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++|++|++++|.+++..|..+..+++|++|++++|+
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 666666666666665555556666666666666665
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=4.2e-18 Score=138.90 Aligned_cols=112 Identities=20% Similarity=0.208 Sum_probs=70.2
Q ss_pred chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525 48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG 122 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~ 122 (165)
++..|..++ +|++|++++|++++.. |..|.++++|++|+|++|++++..+..|.++++|++|++++|+++ .|+
T Consensus 68 ~~~~f~~l~-~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 68 GSYSFFSFP-ELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 145 (635)
T ss_dssp CTTTTTTCT-TCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred CHHHHhCCC-CCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhh
Confidence 444566666 6666666666666443 556666666666666666666444455666666666666666665 356
Q ss_pred cCcCCCEEeccCCCCCC-cccccccCCCCCcEEEccCCcc
Q 038525 123 KILLLQNLDLSHNNLSD-SQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++++|++|++++|.+++ ..|..+..+++|++|++++|+.
T Consensus 146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 66666666666666654 3455666666666666666654
No 11
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=6.1e-18 Score=137.97 Aligned_cols=108 Identities=19% Similarity=0.088 Sum_probs=97.4
Q ss_pred ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCC
Q 038525 54 SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQ 128 (165)
Q Consensus 54 ~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~ 128 (165)
.+|.++++|++++|++++.. +..|.++++|++|++++|+|++..|..|.++++|++|++++|+++ .|.++++|+
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred CCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence 44557889999999999655 789999999999999999999777778999999999999999998 588999999
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+|++++|++++..+..|.++++|++|++++|+..
T Consensus 128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~ 161 (635)
T 4g8a_A 128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 161 (635)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence 9999999999777778999999999999999863
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.6e-17 Score=123.13 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=66.7
Q ss_pred hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525 49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123 (165)
Q Consensus 49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~ 123 (165)
+..+..++ +|++|++++|.+.+.. |..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+..
T Consensus 98 ~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 175 (285)
T 1ozn_A 98 PATFHGLG-RLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175 (285)
T ss_dssp TTTTTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred HHHhcCCc-CCCEEECCCCcCCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC
Confidence 33445555 5666666666666444 555666666666666666666444444566666666666666665 3555
Q ss_pred CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++|+.|++++|.+++..|..+..+++|+.|++++|+.
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 66666666666666655566666666666666666654
No 13
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.3e-17 Score=121.88 Aligned_cols=110 Identities=22% Similarity=0.219 Sum_probs=54.4
Q ss_pred hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525 49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123 (165)
Q Consensus 49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~ 123 (165)
...|..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+..
T Consensus 78 ~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 155 (270)
T 2o6q_A 78 AGIFKELK-NLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155 (270)
T ss_dssp TTTTSSCT-TCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hhhhcCCC-CCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC
Confidence 33344444 4555555555555332 444455555555555555555444444455555555555555544 2444
Q ss_pred CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
+++|+.|++++|.+++..+..|..+++|++|++++|+
T Consensus 156 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 4555555555555544333344445555555555544
No 14
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=117.96 Aligned_cols=102 Identities=19% Similarity=0.129 Sum_probs=93.9
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|.++ .+ |..|..+++|++|++++|.+++..+..|..+++|++|++++|+++ .|..+++|+.|++
T Consensus 32 ~l~~L~L~~n~i~-~i-p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SC-CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hh-HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 6779999999998 78 889999999999999999999777888999999999999999998 5889999999999
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|.+++..+..|..+++|+.|++++|..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 99999966666799999999999999974
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=4.2e-18 Score=143.16 Aligned_cols=81 Identities=28% Similarity=0.339 Sum_probs=61.1
Q ss_pred CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEE
Q 038525 81 FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQC 155 (165)
Q Consensus 81 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 155 (165)
+++|++||+++|+++|.+|.+++.++.|+.|++++|+++ .++.+++|+.||+++|+++|.+|+.+..+++|++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 455667777777777777777777777777777777776 567777777777777777777777777777777888
Q ss_pred ccCCcc
Q 038525 156 VWTCHS 161 (165)
Q Consensus 156 l~~n~~ 161 (165)
+++|+.
T Consensus 711 ls~N~l 716 (768)
T 3rgz_A 711 LSNNNL 716 (768)
T ss_dssp CCSSEE
T ss_pred CcCCcc
Confidence 777764
No 16
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.5e-17 Score=120.55 Aligned_cols=105 Identities=14% Similarity=0.056 Sum_probs=95.0
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
.+++|++++|.+++..++..|..+++|++|++++|.+++..|..|..+++|++|++++|.++ .|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 45699999999997652356899999999999999999777778999999999999999998 4889999999999
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++|.+++..|..|..+++|++|++++|+..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence 999999888999999999999999999864
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.75 E-value=4.2e-17 Score=121.48 Aligned_cols=127 Identities=20% Similarity=0.165 Sum_probs=101.5
Q ss_pred cccccccccccCCCch-hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525 34 KTSFTQQRLVEGQDSS-QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112 (165)
Q Consensus 34 l~~l~~~~~~~~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 112 (165)
+++|..+++..+.+.. ..+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDISALKELT-NLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCT-TCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCchhhcCCC-CCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 4445555554444422 2456667 7889999999998655 77788999999999999999976677788899999999
Q ss_pred cCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 113 LRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|.++ .++.+++|+.|++++|++++..|..+..+++|++|++++|+..
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999887 3678899999999999999777777889999999999998753
No 18
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.75 E-value=4.7e-17 Score=113.82 Aligned_cols=103 Identities=19% Similarity=0.133 Sum_probs=91.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|++.+.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 6779999999999655 777899999999999999999666667899999999999999998 4688999999999
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|.+++..+..+..+++|++|++++|+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 99999976666678899999999999975
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=3.9e-17 Score=118.94 Aligned_cols=103 Identities=20% Similarity=0.131 Sum_probs=94.4
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|.+.+.. |..|..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+..+++|+.|++
T Consensus 41 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 41 NAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 6779999999999877 889999999999999999998555567899999999999999998 4788999999999
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++|+++ .+|..+..+++|++|++++|+..
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 999998 78999999999999999999864
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.9e-17 Score=126.65 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=15.9
Q ss_pred ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525 122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
+.+++|+.|++++|.+.+.+|..+.++++|++|++++|
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 33344444444444444444444444444444444443
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=9.1e-17 Score=119.47 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=107.0
Q ss_pred ccccccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCC
Q 038525 33 RKTSFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLK 109 (165)
Q Consensus 33 ~l~~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~ 109 (165)
.+++|..+++..+. ++...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..+..|..+++|+
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 34555555554433 4556677788 8999999999999666 78899999999999999999966666689999999
Q ss_pred EEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 110 YLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 110 ~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.|++++|+++ .+..+++|++|++++|.+++..+..+..+++|+.|++++|..
T Consensus 161 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred eeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 9999999998 478899999999999999976666789999999999999974
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=4.1e-17 Score=121.49 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=100.7
Q ss_pred ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525 37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL 113 (165)
Q Consensus 37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 113 (165)
+...++..+.+ +...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|..+++|++|++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 44444443333 444567777 8889999999998655 778899999999999999998777788899999999999
Q ss_pred CCCCCC-----CCccCcCCCEEeccCCCCCCc-ccccccCCCCCcEEEccCCccC
Q 038525 114 RWKNLT-----EIGKILLLQNLDLSHNNLSDS-QFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 114 s~n~l~-----~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++|.++ .++.+++|++|++++|.+++. +|..+..+++|++|++++|+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 999887 578889999999999999763 6888999999999999998753
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.2e-16 Score=119.45 Aligned_cols=127 Identities=18% Similarity=0.131 Sum_probs=79.8
Q ss_pred ccccccccccccCCC---chhhhhccccCeeEEEeecCC-CCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCC
Q 038525 33 RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECS-IKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKL 108 (165)
Q Consensus 33 ~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~-l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 108 (165)
.++.|..+++..+.+ .+..+..++ +|++|++++|. +.... |..|..+++|++|++++|.+++..|..+..+++|
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cCCCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 334444444443333 233455555 66677777775 55433 5666667777777777777765556666667777
Q ss_pred CEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 109 KYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 109 ~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|++++|+++ .++.+++|+.|++++|.+++..+..+..+++|+.|++++|+.
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 77777777666 356677777777777777654444567777777777777764
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=5.3e-18 Score=128.84 Aligned_cols=109 Identities=14% Similarity=0.225 Sum_probs=75.3
Q ss_pred hhhccccCeeEEEeec-CCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525 51 CFRSLQLGWYHIELVE-CSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI 124 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~-n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l 124 (165)
.+..++ +|++|++++ |.+.+.+ |..|+.+++|++|++++|.+++.+|..|..+++|++|++++|.++ .+..+
T Consensus 71 ~l~~l~-~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 71 SLANLP-YLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp GGGGCT-TCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred hHhCCC-CCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 455566 677777773 6676666 667777777777777777776667777777777777777777665 45666
Q ss_pred cCCCEEeccCCCCCCcccccccCCC-CCcEEEccCCcc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYL-RLSVQCVWTCHS 161 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~~ 161 (165)
++|++|++++|.+++.+|..+..++ +|++|++++|+.
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 7777777777777666677777666 677777776654
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=6e-18 Score=128.55 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=59.0
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc-
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL- 125 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~- 125 (165)
+..++ +|++|++++|.+.+.+ |..|..+++|++|++++|.+++.+|..+..+++|++|++++|+++ .+..++
T Consensus 97 l~~l~-~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 174 (313)
T 1ogq_A 97 IAKLT-QLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174 (313)
T ss_dssp GGGCT-TCSEEEEEEECCEEEC-CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred HhcCC-CCCEEECcCCeeCCcC-CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence 45555 5666666666666555 666666666666666666666566666666666666666666654 344444
Q ss_pred CCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525 126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
+|+.|++++|.+++.+|..+..+. |++|++++|
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 455555555555444444444443 444444444
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=5.2e-17 Score=132.67 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=107.3
Q ss_pred cccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525 36 SFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112 (165)
Q Consensus 36 ~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 112 (165)
++...++..+. +++..|..++ +|++|++++|.+++.. |..|+++++|++|++++|.+++..|..|+.+++|++|+
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCcccccC-HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 34444444443 3555678888 8999999999999776 88899999999999999999988899999999999999
Q ss_pred cCCCCCC-----CCccCcCCCEEeccCCCCCC-cccccccCCCCCcEEEccCCccC
Q 038525 113 LRWKNLT-----EIGKILLLQNLDLSHNNLSD-SQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|.++ .++++++|++|++++|.+++ .+|..+.++++|++|++++|+..
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 9999987 68899999999999999986 57999999999999999999753
No 27
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=3.1e-17 Score=116.71 Aligned_cols=107 Identities=14% Similarity=0.253 Sum_probs=69.1
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CC---CCccCcC
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LT---EIGKILL 126 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~---~~~~l~~ 126 (165)
.+..++ +|++|++++|.+.+.. +..++.+++|++|++++|.+++..|..++.+++|++|++++|+ ++ .+..+++
T Consensus 83 ~l~~l~-~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~ 160 (197)
T 4ezg_A 83 PISGLS-NLERLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE 160 (197)
T ss_dssp GGTTCT-TCCEEEEECTTCBGGG-SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSS
T ss_pred hhhcCC-CCCEEEeECCccCccc-ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCC
Confidence 344555 6667777777766555 6666667777777777777665556666667777777777776 55 4566666
Q ss_pred CCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 127 LQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 127 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
|+.|++++|.+++ ++ .+..+++|+.|++++|+.
T Consensus 161 L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 161 LKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 7777777777763 33 566677777777777664
No 28
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=1.2e-16 Score=120.38 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=51.8
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
+|++|++++|.+. .+ |..+..+++|++|++++|++++..|..|..+++|++|++++|+++ .+..+++|+.|++
T Consensus 78 ~L~~L~Ls~N~l~-~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TCCEEECCSSCCS-SC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCcCC-cC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 4445555555554 34 444555555555555555555444444555555555555555554 2344555555555
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++|++++..+..|..+++|++|++++|+
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 5555553333344455555555555554
No 29
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=4.2e-17 Score=124.71 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=74.6
Q ss_pred CCccccccccccccCCCc--hhhhhccccCeeEEEeecCCCCcccCCcccCC---------CCCCcEEEcccCcCCCCCC
Q 038525 31 ENRKTSFTQQRLVEGQDS--SQCFRSLQLGWYHIELVECSIKGELGSLNFSC---------FSNLQYINLWNNDLSGSIP 99 (165)
Q Consensus 31 ~~~l~~l~~~~~~~~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~---------l~~L~~L~ls~N~l~~~~p 99 (165)
...+++|..+++..+.+. +..+..++ +|++|++++|.+.+.+ |..+.. +++|++|++++|.++ .+|
T Consensus 123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 123 MQQFAGLETLTLARNPLRALPASIASLN-RLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp GGGGTTCSEEEEESCCCCCCCGGGGGCT-TCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred HhccCCCCEEECCCCccccCcHHHhcCc-CCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcC-cch
Confidence 344444444444333321 22244555 5666666666665555 555443 666666666666666 566
Q ss_pred cCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 100 PQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 100 ~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
..++.+++|++|++++|.++ .++.+++|++|++++|.+.+.+|..+..+++|++|++++|+.
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred HhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence 66666666666666666665 455566666666666666666666666666666666666543
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.71 E-value=6.5e-17 Score=125.87 Aligned_cols=117 Identities=16% Similarity=0.079 Sum_probs=102.8
Q ss_pred cCCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----
Q 038525 44 EGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---- 119 (165)
Q Consensus 44 ~~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---- 119 (165)
...+|...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|+.+++|++|++++|.++
T Consensus 57 l~~l~~~~~~~l~-~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 57 MRKLPAALLDSFR-QVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp ESEECTHHHHHCC-CCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hhhCChhHhcccc-cCcEEECCCCcccccC-hhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 3446777788888 8999999999998655 778999999999999999999777888999999999999999988
Q ss_pred -CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 120 -EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 120 -~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
.+..+++|++|++++|.+++..|..+..+++|++|++++|+..
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 3688999999999999999877888999999999999999764
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=5.4e-17 Score=128.30 Aligned_cols=124 Identities=18% Similarity=0.127 Sum_probs=103.3
Q ss_pred cccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525 36 SFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112 (165)
Q Consensus 36 ~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 112 (165)
++...++..+.+ ++..+..++ +|++|++++|.+.+.. |..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred CceEEEecCccccccchhhcccCC-CCCEEECCCCcccccC-hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 344444444443 345567777 8999999999999776 88899999999999999999877788889999999999
Q ss_pred cCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 113 LRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++|+++ .+..+++|++|++++|++++..+..+..+++|++|++++|+.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 9999988 678899999999999999976666788999999999999975
No 32
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=6.5e-17 Score=125.05 Aligned_cols=113 Identities=19% Similarity=0.149 Sum_probs=89.3
Q ss_pred chhhhh-ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525 48 SSQCFR-SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI 121 (165)
Q Consensus 48 ~~~~~~-~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~ 121 (165)
+...+. .++ +|++|++++|++++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|+++ .|
T Consensus 55 ~~~~~~~~l~-~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 132 (361)
T 2xot_A 55 RAEWTPTRLT-NLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132 (361)
T ss_dssp CTTSSSSCCT-TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred Chhhhhhccc-ccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence 444455 666 7889999999988655 778889999999999999998666667888899999999999887 67
Q ss_pred ccCcCCCEEeccCCCCCCcccccc---cCCCCCcEEEccCCccC
Q 038525 122 GKILLLQNLDLSHNNLSDSQFRFV---IPYLRLSVQCVWTCHST 162 (165)
Q Consensus 122 ~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~L~~L~l~~n~~~ 162 (165)
.++++|+.|++++|.+++..+..| ..+++|+.|++++|+..
T Consensus 133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 888899999999999985444444 56888999999988764
No 33
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.71 E-value=1.7e-16 Score=110.68 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=64.6
Q ss_pred EEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCC
Q 038525 61 HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHN 135 (165)
Q Consensus 61 ~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N 135 (165)
++++++|.++ .+ |..+. ++|++|++++|.+++..|..|..+++|++|++++|+++ .|..+++|++|++++|
T Consensus 13 ~l~~s~n~l~-~i-p~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLA-SV-PTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCS-SC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cc-CccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 6677777766 45 54442 66777777777777555666667777777777777766 3566677777777777
Q ss_pred CCCCcccccccCCCCCcEEEccCCcc
Q 038525 136 NLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 136 ~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++++..+..|..+++|++|++++|+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 77655555566777777777777753
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.71 E-value=9.1e-17 Score=127.00 Aligned_cols=125 Identities=18% Similarity=0.102 Sum_probs=103.7
Q ss_pred ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525 37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL 113 (165)
Q Consensus 37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 113 (165)
++.+++..+.+ ++..+..++ +|++|++++|.+.+.+++..|.++++|++|++++|.+++..|..|+.+++|++|++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred cCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 44444444443 455677788 89999999999876664678999999999999999999778889999999999999
Q ss_pred CCCCCC-------CCccCcCCCEEeccCCCCCCccccc-ccCCCCCcEEEccCCccC
Q 038525 114 RWKNLT-------EIGKILLLQNLDLSHNNLSDSQFRF-VIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 114 s~n~l~-------~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~l~~n~~~ 162 (165)
++|.++ .++.+++|++|++++|.+++..|.. +.++++|++|++++|+..
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 999987 2888999999999999999877776 889999999999999753
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.7e-16 Score=112.53 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=92.9
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|++++.. +..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 6779999999999655 777899999999999999999666667889999999999999998 4788999999999
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++|.+++..+..+..+++|++|++++|+..
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 999999777777899999999999999764
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=9.8e-17 Score=120.99 Aligned_cols=110 Identities=22% Similarity=0.217 Sum_probs=76.5
Q ss_pred hhhhccccCeeEEEeecCCCCc-ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525 50 QCFRSLQLGWYHIELVECSIKG-ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~ 123 (165)
..+..++ +|++|++++|.+.+ .. |..+..+++|++|++++|.+++..|..+..+++|+.|++++|+++ .+..
T Consensus 144 ~~~~~l~-~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 144 GIFNGLS-SLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp TTTTTCT-TCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred hhcccCc-CCCEEECCCCccccccc-hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 3345555 66677777777664 34 666777777777777777777666667777777777777777766 4556
Q ss_pred CcCCCEEeccCCCCCCcccccccCCC-CCcEEEccCCcc
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYL-RLSVQCVWTCHS 161 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~~ 161 (165)
+++|+.|++++|.+++..|..+..++ +|++|++++|+.
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 67777777777777777777777764 777777777764
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.70 E-value=4.2e-17 Score=137.13 Aligned_cols=109 Identities=25% Similarity=0.235 Sum_probs=75.3
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL 125 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~ 125 (165)
.+..++ +|++|++++|.+.+.+ |..+..+++|++|++++|.+++.+|..++.+++|++|++++|+++ .++.++
T Consensus 437 ~l~~l~-~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 437 SLGSLS-KLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGCT-TCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHhcCC-CCCEEECCCCcccCcC-CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 345555 6667777777766666 666666777777777777777666766777777777777777665 456667
Q ss_pred CCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+|++|++++|++++.+|..+..+++|++|++++|+.
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence 777777777777767777777777777777777754
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1e-16 Score=131.29 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=103.9
Q ss_pred CCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----
Q 038525 45 GQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----- 119 (165)
Q Consensus 45 ~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----- 119 (165)
+.+|+..+..++ +|++|++++|.+.+.. |..|+.+++|++|++++|.+++..|..|+.+++|++|++++|.++
T Consensus 64 ~~lp~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 141 (597)
T 3oja_B 64 RKLPAALLDSFR-QVELLNLNDLQIEEID-TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRG 141 (597)
T ss_dssp SEECTHHHHHCC-CCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCHHHHccCC-CCcEEECCCCCCCCCC-hHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence 446777788888 8999999999999766 789999999999999999999888888899999999999999998
Q ss_pred CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 120 EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 120 ~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
.|+.+++|++|++++|.+++..|..|..+++|++|++++|+..
T Consensus 142 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 142 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 3688999999999999999888888999999999999999754
No 39
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.9e-16 Score=117.47 Aligned_cols=125 Identities=18% Similarity=0.060 Sum_probs=103.5
Q ss_pred cccccccccccCCCc--hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525 34 KTSFTQQRLVEGQDS--SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL 111 (165)
Q Consensus 34 l~~l~~~~~~~~~~~--~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L 111 (165)
+++|..+++..+.+. +..+..++ +|++|++++|++++.. |..|..+++|++|++++|++++..+..|..+++|+.|
T Consensus 76 l~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCT-TCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCCEEECCCCcCCcCchhhccCC-CCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 344444444444432 12345667 8999999999999665 7889999999999999999997666778899999999
Q ss_pred EcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 112 NLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 112 ~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++++|+++ .+..+++|+.|++++|+++ .+|..+....+|+.+++++|..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 99999998 4678999999999999998 7888888999999999999974
No 40
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=2e-16 Score=122.30 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=95.1
Q ss_pred CeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ 131 (165)
.+++|++++|.+++.. +..|. .+++|++|++++|++++..|..|..+++|++|++++|+++ .|..+++|+.|+
T Consensus 40 ~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 5679999999999665 77777 9999999999999999777788999999999999999998 588999999999
Q ss_pred ccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 132 LSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 132 ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|.+++..|..|.++++|+.|++++|+..
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 9999999887899999999999999999864
No 41
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.69 E-value=3.8e-16 Score=109.34 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=57.8
Q ss_pred EEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccCC
Q 038525 61 HIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSHN 135 (165)
Q Consensus 61 ~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N 135 (165)
.+++++|.+. .+ |..+. ++|++|++++|++++..|..|..+++|++|++++|+++ .|..+++|++|++++|
T Consensus 16 ~l~~~~n~l~-~i-P~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLA-SV-PAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCS-SC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCC-cc-CCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 5666666665 45 44443 56666666666666555556666666666666666665 2455666666666666
Q ss_pred CCCCcccccccCCCCCcEEEccCCc
Q 038525 136 NLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 136 ~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++++..+..|..+++|++|++++|+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 6664444446666666666666665
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=124.91 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=77.7
Q ss_pred chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525 48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG 122 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~ 122 (165)
++..|..++ +|++|++++|.+.+.. |..|.++++|++|++++|.+++..+..|..+++|++|++++|+++ .+.
T Consensus 48 ~~~~~~~l~-~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 48 NQDEFASFP-HLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp CTTTTTTCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CHhHccCCC-CCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence 344566666 6777777777777655 677777777777777777777444445677777777777777766 466
Q ss_pred cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++|+.|++++|.+++..|..|.++++|+.|++++|+.
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 677777777777777666666677777777777776654
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.68 E-value=1.6e-16 Score=129.80 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=73.4
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT-----EIGKI 124 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l 124 (165)
.+..++ +|++|++++|.+.+.. |..+..+++|++|++++|.+++ .+|..++.+++|+.|++++|+++ .+..+
T Consensus 419 ~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 419 AFLSLE-KLLYLDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp TTTTCT-TCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred hhhccc-cCCEEECcCCCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhccc
Confidence 455555 6667777777776655 6666777777777777777665 25666666777777777777665 45666
Q ss_pred cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|++|++++|++++..|..+..+++|+.|++++|+.
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 6777777777777666666666677777777776664
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.2e-16 Score=119.05 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=93.2
Q ss_pred hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC-CCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525 50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG-SIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~ls~n~l~-----~~~~ 123 (165)
..+..++ +|++|++++|.+.+.. +..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.++ .+..
T Consensus 120 ~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 197 (306)
T 2z66_A 120 SVFLSLR-NLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197 (306)
T ss_dssp TTTTTCT-TCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhhcc-CCCEEECCCCcCCccc-hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcC
Confidence 3466677 7889999999888776 7788889999999999998875 47888888999999999999887 5778
Q ss_pred CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|+.|++++|.+++..+..+..+++|++|++++|+..
T Consensus 198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 889999999999998766667888999999999998763
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=127.15 Aligned_cols=124 Identities=19% Similarity=0.167 Sum_probs=104.5
Q ss_pred ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525 37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL 113 (165)
Q Consensus 37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 113 (165)
+...++..+.+ ++..|..++ +|++|++++|.+.+.. |..|+++++|++|++++|.+++..|..|+.+++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccC-cccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 34444444433 455677888 8999999999998665 788999999999999999999777788999999999999
Q ss_pred CCCCCC-----CCccCcCCCEEeccCCCCCC-cccccccCCCCCcEEEccCCccC
Q 038525 114 RWKNLT-----EIGKILLLQNLDLSHNNLSD-SQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 114 s~n~l~-----~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++|.++ .++.+++|++|++++|.+++ .+|+.+.++++|++|++++|+..
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 999987 58899999999999999986 46899999999999999999753
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=3.5e-16 Score=127.07 Aligned_cols=103 Identities=18% Similarity=0.127 Sum_probs=91.5
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN 135 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N 135 (165)
++++|++++|.+.+.. |..|..+++|++|++++|.+++..|+.|..+++|++|++++|+++ .-..+++|++|++++|
T Consensus 53 ~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N 131 (562)
T 3a79_B 53 RTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN 131 (562)
T ss_dssp TCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred CcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 6779999999999665 789999999999999999999888889999999999999999998 2238899999999999
Q ss_pred CCCC-cccccccCCCCCcEEEccCCcc
Q 038525 136 NLSD-SQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 136 ~l~~-~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++++ .+|..|.++++|++|++++|+.
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CccccCchHhhcccCcccEEecCCCcc
Confidence 9986 3468899999999999999875
No 47
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.9e-16 Score=109.71 Aligned_cols=107 Identities=17% Similarity=0.178 Sum_probs=91.8
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCc
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKIL 125 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~ 125 (165)
+..++ +|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++ .+..++
T Consensus 45 ~~~l~-~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 45 TAEFV-NLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp CGGGG-GCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred HHhCC-CCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 56666 788999999998853 57889999999999999999778887778999999999999988 466789
Q ss_pred CCCEEeccCCCCCCccc---ccccCCCCCcEEEccCCccC
Q 038525 126 LLQNLDLSHNNLSDSQF---RFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~l~~n~~~ 162 (165)
+|+.|++++|.+++..+ ..+..+++|++|++++|+..
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999999999986544 47889999999999998764
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=6.5e-16 Score=127.78 Aligned_cols=113 Identities=19% Similarity=0.113 Sum_probs=75.9
Q ss_pred CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI 121 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~ 121 (165)
+++..|..++ +|++|++++|.+.+.. |..|+.+++|++|++++|.+++..+..|+.+++|++|++++|.++ .+
T Consensus 40 ~~~~~~~~l~-~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 117 (680)
T 1ziw_A 40 LPAANFTRYS-QLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117 (680)
T ss_dssp CCGGGGGGGT-TCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT
T ss_pred cCHHHHhCCC-cCcEEECCCCccCccC-HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHc
Confidence 4455566666 6777777777777555 666777777777777777776433345667777777777777665 46
Q ss_pred ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++++|++|++++|.+++..|..+.++++|++|++++|+.
T Consensus 118 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 6667777777777777666666666777777777776653
No 49
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=3.5e-16 Score=106.36 Aligned_cols=101 Identities=22% Similarity=0.234 Sum_probs=51.8
Q ss_pred CeeEEEeecCCCC-cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIK-GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ 131 (165)
++++|++++|.+. +.+ |..+..+++|++|++++|.+++. ..++.+++|++|++++|.++ .++.+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKL-EGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBC-CSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHH-HHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3445555555554 444 44555555555555555555533 44555555555555555554 223355555555
Q ss_pred ccCCCCCCc-ccccccCCCCCcEEEccCCcc
Q 038525 132 LSHNNLSDS-QFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 132 ls~N~l~~~-~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++|.+++. .|..+..+++|++|++++|+.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 555555532 224455555555555555543
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=5.8e-16 Score=115.25 Aligned_cols=119 Identities=20% Similarity=0.145 Sum_probs=75.0
Q ss_pred CCccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCC
Q 038525 31 ENRKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK 107 (165)
Q Consensus 31 ~~~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 107 (165)
...++.|+..++..+.+ +...+..++ +|++|++++|.+.+.. +..|..+++|++|++++|.+++..+..++.+++
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 125 (276)
T 2z62_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (276)
T ss_dssp TTTCTTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred hccccCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence 33444555555544443 334456666 6777777777777554 666777777777777777777555556777777
Q ss_pred CCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCcccccccCCCCC
Q 038525 108 LKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRL 151 (165)
Q Consensus 108 L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 151 (165)
|++|++++|.++ .++.+++|++|++++|++++..+..+..+.+|
T Consensus 126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 777777777665 35566777777777777765444444443333
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=4.4e-16 Score=110.75 Aligned_cols=125 Identities=14% Similarity=0.154 Sum_probs=102.3
Q ss_pred CccccccccccccCCCch-hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCE
Q 038525 32 NRKTSFTQQRLVEGQDSS-QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKY 110 (165)
Q Consensus 32 ~~l~~l~~~~~~~~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 110 (165)
..+..+...++..+.+.. ..+..++ +|++|++++|.+. . +..+..+++|++|++++|.+++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~-~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHAT-N--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCS-C--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCC-CCCEEEccCCCCC-c--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 344555555555444432 2466777 8999999999766 3 447899999999999999999778889999999999
Q ss_pred EEcCCCCCC-----CCccCcCCCEEeccCCC-CCCcccccccCCCCCcEEEccCCccC
Q 038525 111 LNLRWKNLT-----EIGKILLLQNLDLSHNN-LSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 111 L~ls~n~l~-----~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
|++++|.++ .++.+++|++|++++|. ++ .+| .+..+++|+.|++++|+..
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence 999999998 57889999999999998 65 566 6899999999999999864
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.66 E-value=5.5e-16 Score=126.59 Aligned_cols=112 Identities=19% Similarity=0.141 Sum_probs=75.4
Q ss_pred chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525 48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG 122 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~ 122 (165)
++..|..++ +|++|++++|.+.+.. |..|+++++|++|++++|.+++..|..|+.+++|++|++++|.++ .++
T Consensus 49 ~~~~~~~l~-~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 49 QNTTFSRLI-NLTFLDLTRCQIYWIH-EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp CTTTSTTCT-TCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred ChhHhccCc-cceEEECCCCccceeC-hhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 344556666 6777777777777555 667777777777777777777666667777777777777777766 456
Q ss_pred cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++|++|++++|.+++..+..+..+++|++|++++|+.
T Consensus 127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 667777777777777653323344467777777777654
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=8.6e-16 Score=122.32 Aligned_cols=129 Identities=18% Similarity=0.108 Sum_probs=92.9
Q ss_pred CCccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCC
Q 038525 31 ENRKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK 107 (165)
Q Consensus 31 ~~~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 107 (165)
...++.|..+++..+.+ .+..|..++ +|++|++++|.+.+.. +..|.++++|++|++++|.+++..|..|..+++
T Consensus 52 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 52 FASFPHLEELELNENIVSAVEPGAFNNLF-NLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccCCCCCCEEECCCCccCEeChhhhhCCc-cCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 33445555555554444 345567777 7888888888888443 566788888888888888888777777888888
Q ss_pred CCEEEcCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 108 LKYLNLRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 108 L~~L~ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
|+.|++++|.++ .+..+++|+.|++++|.+++..+..+.++++|+.|++++|+.
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 888888888876 567777788888888877765555667777777777776653
No 54
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.1e-16 Score=114.51 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=51.5
Q ss_pred hhhccccCeeEEEeec-CCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCC---EEEcCCC-CCC-----C
Q 038525 51 CFRSLQLGWYHIELVE-CSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLK---YLNLRWK-NLT-----E 120 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~-n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~---~L~ls~n-~l~-----~ 120 (165)
.|..++ +|++|++++ |.+++.. +..|.++++|++|++++|.+++ +|. +..+++|+ +|++++| .++ .
T Consensus 75 ~f~~l~-~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~ 150 (239)
T 2xwt_C 75 SFYNLS-KVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNA 150 (239)
T ss_dssp TEESCT-TCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTT
T ss_pred HcCCCc-CCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCccc
Confidence 344444 455555554 5554322 4445555555555555555552 443 44455554 5555555 444 3
Q ss_pred CccCcCCC-EEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525 121 IGKILLLQ-NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 121 ~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
|.++++|+ .|++++|.++ .+|......++|+.|++++|
T Consensus 151 ~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp TTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred ccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 45555555 5555555555 33333222255555555555
No 55
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=1.6e-16 Score=108.11 Aligned_cols=104 Identities=15% Similarity=0.176 Sum_probs=91.0
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccC
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKI 124 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l 124 (165)
.+..++ ++++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|++++|.++ .++.+
T Consensus 37 ~~~~l~-~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l 112 (149)
T 2je0_A 37 LTDEFE-ELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKL 112 (149)
T ss_dssp CCTTCT-TCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGC
T ss_pred HHhhcC-CCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhC
Confidence 356667 899999999999853 57899999999999999999778888888999999999999998 57889
Q ss_pred cCCCEEeccCCCCCCccc---ccccCCCCCcEEEccC
Q 038525 125 LLLQNLDLSHNNLSDSQF---RFVIPYLRLSVQCVWT 158 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p---~~~~~l~~L~~L~l~~ 158 (165)
++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 113 ~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 113 ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999999986554 4789999999999874
No 56
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.6e-16 Score=131.76 Aligned_cols=111 Identities=22% Similarity=0.207 Sum_probs=97.0
Q ss_pred CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCc
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIG 122 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~ 122 (165)
+++..+..++ .|++|++++|.+. .+ |..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+ .++
T Consensus 215 ~~~~~~~~l~-~L~~L~Ls~n~l~-~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQ-LWHALDLSNLQIF-NI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp -------CCC-CCCEEECTTSCCS-CC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred cChhhhccCC-CCcEEECCCCCCC-CC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 3556677777 8999999999998 77 778889999999999999999 89999999999999999999998 788
Q ss_pred cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
.+++|++|+|++|.++ .+|..|..+++|++|+|++|+..
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence 9999999999999997 78889999999999999999864
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.4e-15 Score=120.66 Aligned_cols=126 Identities=21% Similarity=0.211 Sum_probs=60.6
Q ss_pred ccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcC--------
Q 038525 33 RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQ-------- 101 (165)
Q Consensus 33 ~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-------- 101 (165)
.++.|..+++..+.+ ++..|..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 174 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLA-SLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCccCCcChhhccCcc-cCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCCcceeCHhHHhcCCccc
Confidence 334444444433333 333455555 5666666666665333 444555666666666666555322222
Q ss_pred -----------------cCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 102 -----------------IGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 102 -----------------~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
|..+++|++|++++|.++ .+..+++|+.|++++|.+++..|..|.++++|+.|++++|+
T Consensus 175 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence 333444444444444443 33344445555555555544444444444444444444443
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=1.1e-15 Score=124.76 Aligned_cols=106 Identities=16% Similarity=0.073 Sum_probs=97.9
Q ss_pred ccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEE
Q 038525 56 QLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNL 130 (165)
Q Consensus 56 ~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L 130 (165)
+..+++|++++|.+++.. |..|+++++|++|++++|.+++..|..|+.+++|++|++++|+++ .++++++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCC-hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 336779999999999776 889999999999999999999888999999999999999999997 68899999999
Q ss_pred eccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 131 DLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 131 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++++|.+++..|..+.++++|++|++++|+..
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCccc
Confidence 99999999777889999999999999999864
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=1.2e-15 Score=120.95 Aligned_cols=67 Identities=25% Similarity=0.234 Sum_probs=32.8
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT 119 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~ 119 (165)
.|..++ +|++|++++|.+.+.. +..|.++++|++|++++|.+++..+..|..+++|++|++++|+++
T Consensus 94 ~~~~l~-~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 160 (452)
T 3zyi_A 94 TFRHLH-HLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160 (452)
T ss_dssp TTTTCT-TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred HcCCCC-CCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence 344444 4555555555554333 444555555555555555555333334444555555555555444
No 60
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.65 E-value=4.9e-16 Score=128.25 Aligned_cols=109 Identities=11% Similarity=0.129 Sum_probs=94.7
Q ss_pred hhhccccCeeEEEeecCCCCcc-----------------cCCcccC--CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525 51 CFRSLQLGWYHIELVECSIKGE-----------------LGSLNFS--CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL 111 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~-----------------~~p~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L 111 (165)
.+..++ +|++|++++|.+++. + |..++ .+++|++|++++|.+.+.+|+.++.+++|++|
T Consensus 201 ~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i-p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 201 AVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYK-TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred HHhccc-CCCEEECcCCccccccccccccccccchhcccC-chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 366677 899999999999975 8 88888 99999999999999999999999999999999
Q ss_pred EcCCCC-CC------CCccC------cCCCEEeccCCCCCCcccc--cccCCCCCcEEEccCCccC
Q 038525 112 NLRWKN-LT------EIGKI------LLLQNLDLSHNNLSDSQFR--FVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 112 ~ls~n~-l~------~~~~l------~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~l~~n~~~ 162 (165)
++++|+ ++ .++.+ ++|++|++++|.++ .+|. .+.++++|++|++++|+..
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc
Confidence 999998 65 34444 89999999999998 7888 8999999999999998754
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=8.7e-16 Score=130.29 Aligned_cols=113 Identities=19% Similarity=0.145 Sum_probs=86.1
Q ss_pred chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-------C
Q 038525 48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-------E 120 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-------~ 120 (165)
.+..|..++ +|++|++++|...+.++|..|..+++|++|++++|.+++..|+.|+.+++|++|++++|.++ .
T Consensus 40 ~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 40 TASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp CSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred ChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 344566777 78888888886655655677888888888888888888777888888888888888888776 2
Q ss_pred CccCcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525 121 IGKILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 121 ~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~ 161 (165)
++.+++|++|++++|.+++..| ..|.++++|++|++++|+.
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 6778888888888888876544 4678888888888888764
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=6.7e-16 Score=117.05 Aligned_cols=128 Identities=18% Similarity=0.113 Sum_probs=79.5
Q ss_pred CccccccccccccCCCch--hhhhcc-----ccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC--CCcCc
Q 038525 32 NRKTSFTQQRLVEGQDSS--QCFRSL-----QLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS--IPPQI 102 (165)
Q Consensus 32 ~~l~~l~~~~~~~~~~~~--~~~~~l-----~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~--~p~~~ 102 (165)
..+++|..+++..+.+.. ..+..+ + +|++|++++|++.+.. |..|+.+++|++|++++|++.+. .|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKP-GLKVLSIAQAHSLNFS-CEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCT-TCCEEEEESCSCCCCC-TTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcC-CCcEEEeeCCCCccch-HHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 344455555554443321 223333 3 6777777777777554 67777777777777777776543 23333
Q ss_pred --CCCCCCCEEEcCCCCCC--------CCccCcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525 103 --GSLLKLKYLNLRWKNLT--------EIGKILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 103 --~~l~~L~~L~ls~n~l~--------~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~ 161 (165)
..+++|++|++++|+++ .+..+++|++|++++|.+++..| ..+..+++|++|++++|+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 66777777777777776 12355677777777777776554 3455567777777777765
No 63
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=3e-15 Score=122.65 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=89.1
Q ss_pred CCCccccccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCC
Q 038525 30 SENRKTSFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLL 106 (165)
Q Consensus 30 ~~~~l~~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~ 106 (165)
....++.|..+++..+. +++..|..++ +|++|++++|.+.+.. +..|+.+++|++|++++|.+++..|..|+.++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCC-CCCEEEeeCCCCCCCC-HHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 33444455555554333 3455566677 7888888888887433 55567888888888888888877777777788
Q ss_pred CCCEEEcCCCCCC--C--------------------------------------------------------------Cc
Q 038525 107 KLKYLNLRWKNLT--E--------------------------------------------------------------IG 122 (165)
Q Consensus 107 ~L~~L~ls~n~l~--~--------------------------------------------------------------~~ 122 (165)
+|++|++++|.++ . +.
T Consensus 172 ~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~ 251 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL 251 (597)
T ss_dssp TCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGG
T ss_pred cCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhc
Confidence 8888888777664 1 34
Q ss_pred cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++|+.|++++|.+++..|..|..+++|+.|++++|+.
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 290 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence 456677777777777766677777777777777777764
No 64
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.6e-16 Score=128.49 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=93.1
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH 134 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~ 134 (165)
.+++|++++|.+++ + |. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~-l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-L-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-C-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-C-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 46799999999995 6 75 999999999999999999 88999999999999999999998 678899999999999
Q ss_pred CCCCCcc-cccccCCCCCcEEEccCCccC
Q 038525 135 NNLSDSQ-FRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 135 N~l~~~~-p~~~~~l~~L~~L~l~~n~~~ 162 (165)
|.+++.. |..+..+++|+.|++++|+..
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 9999776 999999999999999999863
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=119.43 Aligned_cols=99 Identities=19% Similarity=0.118 Sum_probs=45.9
Q ss_pred eeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525 59 WYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS 133 (165)
Q Consensus 59 L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls 133 (165)
+++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .++.+++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccC-HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 335555555544322 334444555555555555554434444444555555555555444 13444445555555
Q ss_pred CCCCCCcccc--cccCCCCCcEEEccCC
Q 038525 134 HNNLSDSQFR--FVIPYLRLSVQCVWTC 159 (165)
Q Consensus 134 ~N~l~~~~p~--~~~~l~~L~~L~l~~n 159 (165)
+|++++ +|. .+.++++|++|++++|
T Consensus 133 ~n~l~~-l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 133 GNPYKT-LGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCcc-cCchhhhccCCCCcEEECCCC
Confidence 554442 222 3444444444444444
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=119.04 Aligned_cols=62 Identities=18% Similarity=0.196 Sum_probs=33.0
Q ss_pred ccccccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCC
Q 038525 33 RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSG 96 (165)
Q Consensus 33 ~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~ 96 (165)
.+++|..+++..+.+ +...|..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~ 150 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIES 150 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcccc
Confidence 344444444443333 334455555 5666666666666333 4455666666666666665553
No 67
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=9.5e-16 Score=106.19 Aligned_cols=102 Identities=25% Similarity=0.303 Sum_probs=90.4
Q ss_pred CeeEEEeecCCCC-cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIK-GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ 131 (165)
++++|++++|.+. +.+ |..+..+++|++|++++|.+++. ..+..+++|++|++++|.++ .+..+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 6789999999998 778 88889999999999999999955 78899999999999999998 344689999999
Q ss_pred ccCCCCCCcc-cccccCCCCCcEEEccCCccC
Q 038525 132 LSHNNLSDSQ-FRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 132 ls~N~l~~~~-p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|.+++.. +..+..+++|++|++++|+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 9999998632 278999999999999999864
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=119.38 Aligned_cols=110 Identities=22% Similarity=0.188 Sum_probs=65.2
Q ss_pred hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525 49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123 (165)
Q Consensus 49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~ 123 (165)
...|..++ +|++|++++|.+.+.. +..|.++++|++|++++|.+++..+..|..+++|++|++++|+++ .+..
T Consensus 81 ~~~~~~l~-~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 158 (440)
T 3zyj_A 81 VNSFKHLR-HLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158 (440)
T ss_dssp TTTTSSCS-SCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT
T ss_pred HHHhhCCC-CCCEEECCCCcCCccC-hhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhh
Confidence 34455666 6777777777776444 666777777777777777777444455667777777777777665 3445
Q ss_pred CcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCc
Q 038525 124 ILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~ 160 (165)
+++|++|++++|+..+.+| ..|.++++|++|++++|+
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 5555555555532222222 244455555555555554
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=5.5e-16 Score=125.17 Aligned_cols=111 Identities=19% Similarity=0.110 Sum_probs=72.2
Q ss_pred hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCc
Q 038525 49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIG 122 (165)
Q Consensus 49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~ 122 (165)
+..+..++ +|++|++++|.+.+.. |..|+.+++|++|++++|.+++..|..|+.+++|++|++++|.++ .++
T Consensus 43 ~~~~~~l~-~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 43 HGDLRACA-NLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp SSTTSSCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred hhhhhcCC-cccEEECCCCCcCccC-hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 34455666 6777777777777554 666777777777777777777555555677777777777777665 355
Q ss_pred cCcCCCEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525 123 KILLLQNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++|++|++++|.+.+.+| ..+.++++|++|++++|+.
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 66667777777766433443 4566666677776666654
No 70
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=9.5e-16 Score=116.05 Aligned_cols=129 Identities=15% Similarity=0.060 Sum_probs=97.7
Q ss_pred CccccccccccccCCCch-------hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCC--C--Cc
Q 038525 32 NRKTSFTQQRLVEGQDSS-------QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGS--I--PP 100 (165)
Q Consensus 32 ~~l~~l~~~~~~~~~~~~-------~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~--~--p~ 100 (165)
..+++|..+++..+.+.. ..+..++ +|++|++++|.+.+.. |..|..+++|++|++++|++.+. + +.
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKP-GLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS-CCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhcc-CCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 556666777776666543 2233466 8889999999998666 88899999999999999998642 2 22
Q ss_pred CcCCCCCCCEEEcCCCCCC---C-----CccCcCCCEEeccCCCCCCcccccccCC---CCCcEEEccCCccC
Q 038525 101 QIGSLLKLKYLNLRWKNLT---E-----IGKILLLQNLDLSHNNLSDSQFRFVIPY---LRLSVQCVWTCHST 162 (165)
Q Consensus 101 ~~~~l~~L~~L~ls~n~l~---~-----~~~l~~L~~L~ls~N~l~~~~p~~~~~l---~~L~~L~l~~n~~~ 162 (165)
.++.+++|++|++++|+++ . ++.+++|++|++++|.+++..|+.+..+ ++|++|++++|+..
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 3467888999999999887 1 3567889999999999987777777766 58888888888753
No 71
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=124.59 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=97.2
Q ss_pred hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC-CCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525 50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS-GSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~ 123 (165)
..+..++ +|++|++++|.+.+.. |..+.++++|++|++++|.++ +.+|..+..+++|+.|++++|+++ .+..
T Consensus 415 ~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 415 SVFLSLR-NLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp CTTTTCT-TCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred hhhhcCC-CCCEEeCcCCcccccc-hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 4566777 8889999999998777 888999999999999999987 578888999999999999999988 6788
Q ss_pred CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++|++|++++|++++..|..+.++++|+.|++++|+.
T Consensus 493 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 89999999999999988778899999999999999874
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=6.4e-15 Score=114.59 Aligned_cols=128 Identities=16% Similarity=0.120 Sum_probs=82.4
Q ss_pred CccccccccccccCC---CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCC
Q 038525 32 NRKTSFTQQRLVEGQ---DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKL 108 (165)
Q Consensus 32 ~~l~~l~~~~~~~~~---~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L 108 (165)
..++.|+.+++..+. +++..+..++ +|++|++++|.+. .+++..|..+++|++|++++|.+++..|..+..+++|
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVP-LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCC-CCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 334444444444333 3444566666 7777777777777 4414445777777777777777776666667777777
Q ss_pred CEEEcCCCCCC--C--------------------------------------------------------------CccC
Q 038525 109 KYLNLRWKNLT--E--------------------------------------------------------------IGKI 124 (165)
Q Consensus 109 ~~L~ls~n~l~--~--------------------------------------------------------------~~~l 124 (165)
++|++++|+++ . +..+
T Consensus 168 ~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l 247 (390)
T 3o6n_A 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 247 (390)
T ss_dssp CEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGC
T ss_pred CEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCC
Confidence 77777777654 1 2334
Q ss_pred cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|++|++++|.+++..|..+..+++|+.|++++|+.
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcC
Confidence 5666677777777666666777777777777777764
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=4.4e-15 Score=113.10 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=50.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
+|++|++++|.+.+.. |..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+..+++|++|+++
T Consensus 193 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 3445555555555433 445555555555555555555444444555555555555555554 34445555555555
Q ss_pred CCCCCCcccccccC------CCCCcEEEccCCcc
Q 038525 134 HNNLSDSQFRFVIP------YLRLSVQCVWTCHS 161 (165)
Q Consensus 134 ~N~l~~~~p~~~~~------l~~L~~L~l~~n~~ 161 (165)
+|++++..+..|.. ...|+.+++++|..
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 55555433333322 13445555555543
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=9.9e-16 Score=122.90 Aligned_cols=101 Identities=23% Similarity=0.168 Sum_probs=47.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEcCCCCCC---CCccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG-SLLKLKYLNLRWKNLT---EIGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls 133 (165)
+|++|++++|.+++.. |..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.++ ....+++|+.|+++
T Consensus 121 ~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 121 GKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp SCEEEECCSSCCCSGG-GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred CCCEEECCCCCCCCCC-chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence 3445555555555444 44555555555555555555544444443 3455555555555544 22334444444444
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCc
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
+|.+++ +|..+..+++|+.|++++|+
T Consensus 200 ~N~l~~-~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 200 SNKLAF-MGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp SSCCCE-ECGGGGGGTTCSEEECTTSC
T ss_pred CCCCCC-CCHhHcCCCCccEEEecCCc
Confidence 444442 22234444444444444443
No 75
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.1e-15 Score=105.67 Aligned_cols=98 Identities=15% Similarity=0.158 Sum_probs=89.0
Q ss_pred eEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEeccC
Q 038525 60 YHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLSH 134 (165)
Q Consensus 60 ~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls~ 134 (165)
+++++++|.+. .+ |..+. ++|++|++++|.++ .+|..|..+++|+.|++++|.++ .|.++++|++|++++
T Consensus 13 ~~l~~~~~~l~-~i-p~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VL-PKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SC-CSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cC-CCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 37899999998 67 76554 68999999999999 88899999999999999999998 588999999999999
Q ss_pred CCCCCcccccccCCCCCcEEEccCCccC
Q 038525 135 NNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 135 N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
|.+++..|..|..+++|++|++++|+..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS 115 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence 9999888889999999999999999864
No 76
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=5.5e-15 Score=112.73 Aligned_cols=103 Identities=16% Similarity=0.059 Sum_probs=83.4
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN 135 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N 135 (165)
++++|++++|.+.+.. |..|..+++|++|++++|.+++..|..|+.+++|++|++++|+++ .-.-.++|++|++++|
T Consensus 55 ~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 55 DTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 5678999999888655 778888999999999999988777888888899999999998887 1122278888888888
Q ss_pred CCCCcccccccCCCCCcEEEccCCcc
Q 038525 136 NLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 136 ~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++..+..+.++++|+.|++++|+.
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred ccCccCHhHhCCCccCCEEECCCCcc
Confidence 88866666788888888888888875
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=129.77 Aligned_cols=131 Identities=20% Similarity=0.146 Sum_probs=105.8
Q ss_pred ccCCCccccccccccccC----CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcC--
Q 038525 28 AASENRKTSFTQQRLVEG----QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQ-- 101 (165)
Q Consensus 28 ~~~~~~l~~l~~~~~~~~----~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-- 101 (165)
+.....++.|..+++..+ .+++..|..++ +|++|++++|.+.+.. |..|+++++|++|++++|.+++..|..
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 118 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP-NLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGY 118 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCT-TCCEEECTTCCCCEEC-TTSSCSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCC-CCCEEECCCCcCcccC-HhHccCCcccCEeeCcCCCCCcccccCcc
Confidence 344556667777777555 34466788888 8999999999999777 999999999999999999999767765
Q ss_pred cCCCCCCCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCcccccccCC--CCCcEEEccCCc
Q 038525 102 IGSLLKLKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDSQFRFVIPY--LRLSVQCVWTCH 160 (165)
Q Consensus 102 ~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l--~~L~~L~l~~n~ 160 (165)
|+.+++|++|++++|.++ .++++++|++|++++|.+++..|+.+..+ ++|+.|++++|.
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 889999999999999987 47889999999999999988777777665 566666666654
No 78
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=6.2e-15 Score=104.52 Aligned_cols=90 Identities=22% Similarity=0.224 Sum_probs=82.5
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL 125 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~ 125 (165)
.+..++ +|++|++++|.+++.. |..|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .+..++
T Consensus 49 ~~~~l~-~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 49 LFGRLP-HLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp SGGGCT-TCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred ccccCC-CCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 477788 8999999999999877 899999999999999999999888888999999999999999998 688899
Q ss_pred CCCEEeccCCCCCCccc
Q 038525 126 LLQNLDLSHNNLSDSQF 142 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p 142 (165)
+|++|++++|.+.+..+
T Consensus 127 ~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 127 SLTSLNLASNPFNCNCH 143 (192)
T ss_dssp TCCEEECTTCCBCCSGG
T ss_pred CCCEEEeCCCCccCcCc
Confidence 99999999999987654
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.61 E-value=6.4e-15 Score=112.18 Aligned_cols=102 Identities=22% Similarity=0.165 Sum_probs=54.7
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN 135 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N 135 (165)
.+++|++++|.+++.. +..|..+++|++|++++|.+++..|..|..+++|++|++++|+++ .-.-.++|++|++++|
T Consensus 53 ~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 53 DTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 4556666666666443 445666666666666666666555666666666666666666655 1111134444444444
Q ss_pred CCCCcccccccCCCCCcEEEccCCc
Q 038525 136 NLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 136 ~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.+++..+..+.++++|+.|++++|+
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp CCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred cccccCHhHhcCCccccEEECCCCc
Confidence 4443333334444444444444443
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=122.20 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=72.7
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHN 135 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N 135 (165)
++++|++++|.+.+.. |..|..+++|++|++++|.+++..|..|+.+++|++|++++|+++ .-..+++|++|++++|
T Consensus 22 ~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N 100 (520)
T 2z7x_B 22 KTTILNISQNYISELW-TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN 100 (520)
T ss_dssp TCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSS
T ss_pred cccEEECCCCcccccC-hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCC
Confidence 5667777777777554 567777777777777777777666677777777777777777776 1116677777777777
Q ss_pred CCCC-cccccccCCCCCcEEEccCCcc
Q 038525 136 NLSD-SQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 136 ~l~~-~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+++ .+|..+.++++|++|++++|+.
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l 127 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHL 127 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred ccccccchhhhccCCcceEEEecCccc
Confidence 7765 3567777777777777777754
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.6e-15 Score=115.23 Aligned_cols=105 Identities=16% Similarity=-0.001 Sum_probs=60.2
Q ss_pred hhccccCeeEEEeecCCCCcccCCccc-CCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNF-SCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILL 126 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~ 126 (165)
+..++ +|++|++++|.+.+.. +..+ ..+++|++|++++|.+++ +|. ...+++|++|++++|+++ .+..+++
T Consensus 140 ~~~l~-~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 140 EGCRS-RVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp TGGGS-SEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred hhccC-CCCEEECCCCCCCccc-HHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCc
Confidence 33444 5556666666555443 4433 245556666666666552 222 223566666666666665 4555666
Q ss_pred CCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 127 LQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 127 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
|+.|++++|.++ .+|..+..+++|+.|++++|+.
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 666666666666 4566666666777777766654
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.61 E-value=8.1e-16 Score=116.59 Aligned_cols=106 Identities=12% Similarity=-0.017 Sum_probs=70.1
Q ss_pred hccccCeeEEEeecCCCCcccCCcccCCC-----CCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--------
Q 038525 53 RSLQLGWYHIELVECSIKGELGSLNFSCF-----SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-------- 119 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l-----~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-------- 119 (165)
..++ +|++|++++|.+++ . |..++.+ ++|++|++++|++++..|..|+.+++|++|++++|++.
T Consensus 118 ~~l~-~L~~L~Ls~N~l~~-~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 118 ATGP-DLNILNLRNVSWAT-R-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp CCSC-CCSEEEEESCBCSS-S-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred hcCC-CccEEEccCCCCcc-h-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 4455 66677777777763 3 5555555 67777777777777666677777777777777777754
Q ss_pred -CCccCcCCCEEeccCCCCCC--ccc-ccccCCCCCcEEEccCCcc
Q 038525 120 -EIGKILLLQNLDLSHNNLSD--SQF-RFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 -~~~~l~~L~~L~ls~N~l~~--~~p-~~~~~l~~L~~L~l~~n~~ 161 (165)
.++.+++|++|++++|.+++ .++ ..+..+++|++|++++|+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 22667777777777777763 112 2345667777777777765
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=3.2e-15 Score=123.62 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=95.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|.+.+.. +..|..+++|++|++++|.+++..|..|+.+++|++|++++|.++ .|+.+++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 6779999999999765 778999999999999999999888999999999999999999988 4889999999999
Q ss_pred cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|.+++..|..|.++++|++|++++|+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcc
Confidence 99999987778999999999999999975
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=114.35 Aligned_cols=123 Identities=17% Similarity=0.089 Sum_probs=102.1
Q ss_pred ccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEc
Q 038525 37 FTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNL 113 (165)
Q Consensus 37 l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l 113 (165)
+..+++..+.+ +...+..++ +|++|++++|.+++.. |..|..+++|++|++++|.+++..+..|+.+++|++|++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred CcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 33444444433 455677888 8999999999999766 888999999999999999999544445899999999999
Q ss_pred CCCCCC------CCccCcCCCEEeccCC-CCCCcccccccCCCCCcEEEccCCcc
Q 038525 114 RWKNLT------EIGKILLLQNLDLSHN-NLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 114 s~n~l~------~~~~l~~L~~L~ls~N-~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++|+++ .+..+++|++|++++| .+.+..|..+.++++|+.|++++|+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 999987 3678999999999999 47656677899999999999999975
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=117.24 Aligned_cols=105 Identities=18% Similarity=0.103 Sum_probs=53.0
Q ss_pred hccccCeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCcC-cCCCCCCC--------------------
Q 038525 53 RSLQLGWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPPQ-IGSLLKLK-------------------- 109 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~-------------------- 109 (165)
..++ +|++|++++|++.+ .+ |..+..+++|++|++++|.+++.+|.. +..+++|+
T Consensus 345 ~~l~-~L~~L~L~~N~l~~l~~~-~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 422 (520)
T 2z7x_B 345 GHLT-ELETLILQMNQLKELSKI-AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422 (520)
T ss_dssp CCCS-SCCEEECCSSCCCBHHHH-HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTT
T ss_pred ccCC-CCCEEEccCCccCccccc-hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhccc
Confidence 3444 45555555555553 23 344555555555555555555434432 44444444
Q ss_pred --EEEcCCCCCC----CCccCcCCCEEeccCCCCCCccccc-ccCCCCCcEEEccCCc
Q 038525 110 --YLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRF-VIPYLRLSVQCVWTCH 160 (165)
Q Consensus 110 --~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~l~~n~ 160 (165)
.|++++|+++ .+..+++|++|++++|+++ .+|.. +..+++|++|++++|+
T Consensus 423 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCC
Confidence 4555554444 2334555555556555555 23333 5555556666665554
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.60 E-value=4.3e-15 Score=108.41 Aligned_cols=112 Identities=17% Similarity=0.178 Sum_probs=72.4
Q ss_pred chhhhhccccCeeEEEeecCC-CCcccCCcccCCCCCCcEEEccc-CcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCc
Q 038525 48 SSQCFRSLQLGWYHIELVECS-IKGELGSLNFSCFSNLQYINLWN-NDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIG 122 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~-l~~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~ 122 (165)
++..|..++ +|++|++++|. +++.. +..|.++++|++|++++ |.+++..+..|..+++|++|++++|+++ .+.
T Consensus 47 ~~~~~~~l~-~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~ 124 (239)
T 2xwt_C 47 PSHAFSNLP-NISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124 (239)
T ss_dssp CTTTTTTCT-TCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCT
T ss_pred CHHHccCCC-CCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccc
Confidence 444555666 66777777775 65333 55667777777777776 7776444556666777777777777666 455
Q ss_pred cCcCCC---EEeccCC-CCCCcccccccCCCCCc-EEEccCCcc
Q 038525 123 KILLLQ---NLDLSHN-NLSDSQFRFVIPYLRLS-VQCVWTCHS 161 (165)
Q Consensus 123 ~l~~L~---~L~ls~N-~l~~~~p~~~~~l~~L~-~L~l~~n~~ 161 (165)
.+++|+ .|++++| .+++..+..|.++++|+ .|++++|+.
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred cccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 556666 7777777 66654445566677777 777776654
No 87
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=1.2e-14 Score=109.25 Aligned_cols=102 Identities=24% Similarity=0.265 Sum_probs=57.0
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~ 128 (165)
+..++ +|++|++++|.+.+ + | .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.++ .+..+++|+
T Consensus 86 l~~l~-~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLK-NLGWLFLDENKVKD-L-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLD 159 (291)
T ss_dssp GTTCT-TCCEEECCSSCCCC-G-G-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred cccCC-CCCEEECCCCcCCC-C-h-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcchhhccCCCCC
Confidence 34444 55555555555552 2 2 25555566666666665553 2 24555566666666666555 455556666
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.|++++|.+++..| +..+++|+.|++++|+.
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 66666666654333 55666666666666654
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=3.1e-15 Score=120.77 Aligned_cols=102 Identities=18% Similarity=0.084 Sum_probs=94.4
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|.+++.. |..|..+++|++|++++|.+++..|+.|+.+++|++|++++|.++ .++++++|++|++
T Consensus 27 ~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCccCccC-hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 6779999999999776 889999999999999999999888889999999999999999998 4889999999999
Q ss_pred cCCCCCC-cccccccCCCCCcEEEccCCc
Q 038525 133 SHNNLSD-SQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 133 s~N~l~~-~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++|.+++ ..|..+.++++|++|++++|+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCc
Confidence 9999986 457789999999999999997
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.2e-14 Score=106.49 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=69.0
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~ 128 (165)
+..++ +|++|++++|++++.. + +..+++|++|++++|.+++ +|... . ++|+.|++++|+++ .+..+++|+
T Consensus 59 l~~l~-~L~~L~L~~N~i~~~~-~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~~~~l~~l~~L~ 131 (263)
T 1xeu_A 59 MQFFT-NLKELHLSHNQISDLS-P--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRDTDSLIHLKNLE 131 (263)
T ss_dssp GGGCT-TCCEEECCSSCCCCCG-G--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSBSGGGTTCTTCC
T ss_pred HhhCC-CCCEEECCCCccCCCh-h--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCCChhhcCccccc
Confidence 55566 7778888888887433 3 7788888888888888873 44322 2 67777777777776 566667777
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.|++++|++++ +| .+..+++|+.|++++|+.
T Consensus 132 ~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 132 ILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EEECTTSCCCB-CG-GGGGCTTCCEEECTTSCC
T ss_pred EEECCCCcCCC-Ch-HHccCCCCCEEECCCCcC
Confidence 77777777764 33 566677777777777664
No 90
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.59 E-value=7.5e-15 Score=111.49 Aligned_cols=124 Identities=21% Similarity=0.128 Sum_probs=102.4
Q ss_pred cccccccccCCCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC-CCCCCCEEEcC
Q 038525 36 SFTQQRLVEGQDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG-SLLKLKYLNLR 114 (165)
Q Consensus 36 ~l~~~~~~~~~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~L~~L~ls 114 (165)
+|....+..+.+.......++ +|++|++++|.+++.. +..+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus 100 ~L~~L~l~~n~l~~~~~~~~~-~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 100 SIETLHAANNNISRVSCSRGQ-GKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp TCCEEECCSSCCSEEEECCCS-SCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CcCEEECCCCccCCcCccccC-CCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 445555555555544444556 7889999999999766 77899999999999999999977777764 78999999999
Q ss_pred CCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 115 WKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 115 ~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+|.++ ....+++|++|++++|.++ .+|..+..+++|+.|++++|+..
T Consensus 178 ~N~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 178 YNFIYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp TSCCCEEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred CCcCcccccccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence 99998 5556899999999999998 46667999999999999999863
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=2.1e-14 Score=116.68 Aligned_cols=106 Identities=20% Similarity=0.125 Sum_probs=52.6
Q ss_pred hhccccCeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCc-CcCCCCCCCEEEcCCCCCC--CCccC-c
Q 038525 52 FRSLQLGWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPP-QIGSLLKLKYLNLRWKNLT--EIGKI-L 125 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~ls~n~l~--~~~~l-~ 125 (165)
+..++ +|++|++++|++++ .+ |..+..+++|++|++++|.+++.+|. .+..+++|+.|++++|+++ .+..+ +
T Consensus 373 ~~~l~-~L~~L~L~~N~l~~~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 450 (562)
T 3a79_B 373 CSTLK-RLQTLILQRNGLKNFFKV-ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450 (562)
T ss_dssp CCSCS-SCCEEECCSSCCCBTTHH-HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred hcccC-CCCEEECCCCCcCCcccc-hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence 34455 56666666666653 22 34456666666666666666643443 2445555555555555554 12222 3
Q ss_pred CCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 126 LLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
+|+.|++++|+++ .+|..+..+++|++|++++|+
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 4444444444444 334333344444444444444
No 92
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=2e-14 Score=100.13 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=75.3
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|.+++.. |..|..+++|++|++++|++++..|..|..+++|++|++++|+++ .+..+++|++|++
T Consensus 31 ~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 31 TTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 6779999999999776 889999999999999999999766667899999999999999998 4889999999999
Q ss_pred cCCCCCCcc
Q 038525 133 SHNNLSDSQ 141 (165)
Q Consensus 133 s~N~l~~~~ 141 (165)
++|.+....
T Consensus 110 ~~N~~~c~c 118 (170)
T 3g39_A 110 LNNPWDCAC 118 (170)
T ss_dssp CSSCBCTTB
T ss_pred CCCCCCCCc
Confidence 999998654
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=2.6e-14 Score=108.24 Aligned_cols=101 Identities=18% Similarity=0.294 Sum_probs=46.3
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~ 128 (165)
+..++ +|++|++++|.+.+ + + .+..+++|++|++++|.+++ +|. +..+++|+.|++++|.++ .+..+++|+
T Consensus 81 ~~~l~-~L~~L~L~~n~l~~-~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLT-KITELELSGNPLKN-V-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQ 154 (308)
T ss_dssp GTTCC-SCCEEECCSCCCSC-C-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCC
T ss_pred HccCC-CCCEEEccCCcCCC-c-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCcc
Confidence 44444 55555555555542 2 2 34555555555555555542 222 444555555555555444 233444444
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.|++++|.+++ ++. +..+++|+.|++++|+
T Consensus 155 ~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 155 YLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 44444444442 221 3444444444444443
No 94
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=3.1e-15 Score=127.25 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=87.4
Q ss_pred hhhccccCeeEEEeecCCCCc-----------------ccCCcccC--CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525 51 CFRSLQLGWYHIELVECSIKG-----------------ELGSLNFS--CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL 111 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~-----------------~~~p~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L 111 (165)
.+..++ +|++|++++|.+++ .+ |..++ .+++|++|++++|.+.+.+|..++.+++|+.|
T Consensus 443 ~l~~L~-~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L 520 (876)
T 4ecn_A 443 AIQRLT-KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520 (876)
T ss_dssp GGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred HHhcCC-CCCEEECcCCcCCCCcccccccccccccccccC-ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence 366677 78899999999887 37 77877 89999999999998888889888889999999
Q ss_pred EcCCCC-CC------CCccC-------cCCCEEeccCCCCCCcccc--cccCCCCCcEEEccCCcc
Q 038525 112 NLRWKN-LT------EIGKI-------LLLQNLDLSHNNLSDSQFR--FVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 112 ~ls~n~-l~------~~~~l-------~~L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~l~~n~~ 161 (165)
++++|+ ++ .++.+ ++|+.|++++|.++ .+|. .+.++++|+.|++++|+.
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCC
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCc
Confidence 999887 64 23333 48888888888888 7777 788888888888888865
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=9.1e-15 Score=117.30 Aligned_cols=122 Identities=15% Similarity=-0.032 Sum_probs=101.1
Q ss_pred cccccccccCCC---chhhhhccccCeeEEEeecCCCCcccCCcccC-CCCCCcEEEcccCcCCCCCCcCcCCCCCCCEE
Q 038525 36 SFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECSIKGELGSLNFS-CFSNLQYINLWNNDLSGSIPPQIGSLLKLKYL 111 (165)
Q Consensus 36 ~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L 111 (165)
+|..+.+..+.+ ++..+..++ +|++|++++|.+++.. |..+. .+++|++|++++|.+++. |. ...+++|+.|
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 196 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred CCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCCCcC-hHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence 344444444443 344566777 8999999999999877 77776 799999999999999955 43 4469999999
Q ss_pred EcCCCCCC----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 112 NLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 112 ~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
++++|.++ .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|...
T Consensus 197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred ECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence 99999998 6788999999999999999 57888999999999999999865
No 96
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=3.8e-14 Score=107.37 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=45.2
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH 134 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~ 134 (165)
+|++|++++|.+.+ + +. +..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+..+++|++|++++
T Consensus 64 ~L~~L~L~~n~i~~-~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 64 NLIGLELKDNQITD-L-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138 (308)
T ss_dssp TCCEEECCSSCCCC-C-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred CCCEEEccCCcCCC-C-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence 44455555555442 2 22 4455555555555555542 22 3444555555555555544 344444555555555
Q ss_pred CCCCCcccccccCCCCCcEEEccCCc
Q 038525 135 NNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 135 N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
|.+++..+ +..+++|++|++++|+
T Consensus 139 n~l~~~~~--l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 139 NQITNISP--LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred CccCcCcc--ccCCCCccEEEccCCc
Confidence 55543221 4445555555555544
No 97
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.8e-14 Score=99.59 Aligned_cols=95 Identities=21% Similarity=0.163 Sum_probs=82.5
Q ss_pred CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----C
Q 038525 46 QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----E 120 (165)
Q Consensus 46 ~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~ 120 (165)
.++...+..++ +|++|++++|.+++.. +..|..+++|++|++++|.+++..+..+..+++|++|++++|.++ .
T Consensus 42 ~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 42 SLPHGVFDKLT-QLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp CCCTTTTTTCT-TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred EeCHHHhcCcc-cccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence 44556677777 8999999999999555 777899999999999999999766677889999999999999998 4
Q ss_pred CccCcCCCEEeccCCCCCCccc
Q 038525 121 IGKILLLQNLDLSHNNLSDSQF 142 (165)
Q Consensus 121 ~~~l~~L~~L~ls~N~l~~~~p 142 (165)
+..+++|++|++++|.+.+..|
T Consensus 120 ~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred hcCCcccCEEEecCCCeeccCc
Confidence 6789999999999999987665
No 98
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.57 E-value=1.4e-14 Score=110.40 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=55.5
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
+|++|++++|.+.+.. +..+..+++|++|++++|.+++..|..+..+++|+.|++++|+++ .+..+++|+.|+++
T Consensus 194 ~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 4445555555555443 455555556666666666655444445555556666666665555 34555555666666
Q ss_pred CCCCCCcccccccCC------CCCcEEEccCCcc
Q 038525 134 HNNLSDSQFRFVIPY------LRLSVQCVWTCHS 161 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l------~~L~~L~l~~n~~ 161 (165)
+|++++..+..|... ..|+.+++++|..
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCCCccChhHccccccccccccccceEeecCcc
Confidence 655554333333332 3455555555543
No 99
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1e-14 Score=101.92 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=74.9
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCcCCCEEe
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKILLLQNLD 131 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~~L~~L~ 131 (165)
+|++|++++|.+++ + ..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~-~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-L--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCE-E--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCc-c--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 67788888888874 3 36778888888888888888443344477888888888888876 356677888888
Q ss_pred ccCCCCCCccccc----ccCCCCCcEEEccCCcc
Q 038525 132 LSHNNLSDSQFRF----VIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 132 ls~N~l~~~~p~~----~~~l~~L~~L~l~~n~~ 161 (165)
+++|.++ .+|.. +..+++|++|++++|+.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888887 45653 77888888888887753
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=4e-14 Score=106.47 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=98.0
Q ss_pred cccccccccccCCCc-hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525 34 KTSFTQQRLVEGQDS-SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112 (165)
Q Consensus 34 l~~l~~~~~~~~~~~-~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 112 (165)
++.++...+..+.+. ...+..++ +|++|++++|.+++.. + +..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~-~L~~L~L~~n~l~~~~-~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIK-P--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCT-TCCEEECCSSCCCCCG-G--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccChhHhcCC-CCCEEEccCCccCCCc-c--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 344555555444332 12256677 8999999999999543 3 9999999999999999984 44 489999999999
Q ss_pred cCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 113 LRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 113 ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|+++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|+..
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence 9999998 678899999999999999864 57899999999999999863
No 101
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.56 E-value=2.9e-14 Score=108.97 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=72.4
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~ 128 (165)
+..++ +|++|++++|.+.+. +. +..+++|++|++++|.+++ + +.+..+++|+.|++++|.++ .+..+++|+
T Consensus 217 ~~~~~-~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMT-RLNSLKIGNNKITDL--SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLN 290 (347)
T ss_dssp GGGCT-TCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred hhcCC-cCCEEEccCCccCCC--cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence 44555 677777777777643 22 6777777777777777763 3 35667777777777777776 456677777
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.|++++|.+++..|+.+..+++|++|++++|+.
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 777777777766666777777777777777764
No 102
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=5e-15 Score=103.46 Aligned_cols=103 Identities=16% Similarity=0.109 Sum_probs=87.7
Q ss_pred hccccCeeEEEeecCCCCcccCCcccCCCC-CCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----C-CccCcC
Q 038525 53 RSLQLGWYHIELVECSIKGELGSLNFSCFS-NLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----E-IGKILL 126 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~-~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~-~~~l~~ 126 (165)
.... ++++|++++|.+. .+ |. +..+. +|++|++++|.+++. +.+..+++|++|++++|.++ . +..+++
T Consensus 16 ~~~~-~L~~L~l~~n~l~-~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 16 TNAV-RDRELDLRGYKIP-VI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp ECTT-SCEEEECTTSCCC-SC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred CCcC-CceEEEeeCCCCc-hh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3444 7889999999998 56 54 44444 999999999999954 67899999999999999998 2 478999
Q ss_pred CCEEeccCCCCCCcccc--cccCCCCCcEEEccCCccC
Q 038525 127 LQNLDLSHNNLSDSQFR--FVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 127 L~~L~ls~N~l~~~~p~--~~~~l~~L~~L~l~~n~~~ 162 (165)
|++|++++|.++ .+|. .+..+++|+.|++++|+..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 999999999997 5676 8899999999999999863
No 103
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=3.3e-14 Score=117.32 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=63.3
Q ss_pred CchhhhhccccCeeEEEeecCCCCcccCCcccCCCC-------CCcEEEcccCcCCCCCCcCcC--CCCCCCEEEcCCCC
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFS-------NLQYINLWNNDLSGSIPPQIG--SLLKLKYLNLRWKN 117 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~-------~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~ls~n~ 117 (165)
++...+..++ +|++|++++|.++ .+++..+.... +|++|++++|.++ .+|..+. .+++|+.|++++|+
T Consensus 448 lp~~~~~~l~-~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 524 (636)
T 4eco_A 448 FPKELFSTGS-PLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNS 524 (636)
T ss_dssp CCTHHHHTTC-CCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSC
T ss_pred CCHHHHccCC-CCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCC
Confidence 3444455555 5666666666666 44122222222 5666666666666 5555554 56666666666666
Q ss_pred CC----CCccCcCCCEEec------cCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 118 LT----EIGKILLLQNLDL------SHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 118 l~----~~~~l~~L~~L~l------s~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
++ .+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|+.
T Consensus 525 l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 525 FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 65 4455566666666 34555556666666666666666666654
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=3.3e-14 Score=105.52 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=96.5
Q ss_pred cccccccccccCCCchh-hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525 34 KTSFTQQRLVEGQDSSQ-CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112 (165)
Q Consensus 34 l~~l~~~~~~~~~~~~~-~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 112 (165)
++.|..+++..+.+... .+..++ +|++|++++|++++ + |. +.. ++|++|++++|.+++ +| .+..+++|+.|+
T Consensus 62 l~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~~-l-~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 62 FTNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLKN-L-NG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCSC-C-TT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCChhhccCC-CCCEEECCCCccCC-c-Cc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 44455555555544211 177777 89999999999985 4 43 333 999999999999995 44 589999999999
Q ss_pred cCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 113 LRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 113 ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+++|+++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|+.
T Consensus 135 Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 135 IRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred CCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 9999998 678899999999999999865 6789999999999999975
No 105
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=3.8e-15 Score=126.73 Aligned_cols=131 Identities=13% Similarity=0.175 Sum_probs=81.0
Q ss_pred cccCCC--ccccccccccccCCC---chhhhhccccCeeEEEeecCC-CCc-ccCCcccCCCC-------CCcEEEcccC
Q 038525 27 VAASEN--RKTSFTQQRLVEGQD---SSQCFRSLQLGWYHIELVECS-IKG-ELGSLNFSCFS-------NLQYINLWNN 92 (165)
Q Consensus 27 ~~~~~~--~l~~l~~~~~~~~~~---~~~~~~~l~~~L~~L~ls~n~-l~~-~~~p~~~~~l~-------~L~~L~ls~N 92 (165)
+|.... ++++|..+++..+.+ .+..+..++ +|++|++++|+ +++ .+ |..++.++ +|+.|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCC
Confidence 444544 566666665543322 123455666 67777777776 665 55 55444333 6777777777
Q ss_pred cCCCCCCc--CcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCC-CcEEEccCCcc
Q 038525 93 DLSGSIPP--QIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLR-LSVQCVWTCHS 161 (165)
Q Consensus 93 ~l~~~~p~--~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~-L~~L~l~~n~~ 161 (165)
.++ .+|. .++.+++|+.|++++|.++ .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|+.
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 776 6666 6667777777777777666 4556666666666666666 56666666666 66666666653
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=5.8e-14 Score=115.39 Aligned_cols=102 Identities=25% Similarity=0.269 Sum_probs=59.0
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~ 128 (165)
+..++ +|++|++++|.+.+ + | .+..+++|+.|++++|.+++ + +.+..+++|+.|++++|.++ .+..+++|+
T Consensus 83 l~~l~-~L~~L~Ls~N~l~~-l-~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~ 156 (605)
T 1m9s_A 83 LTNLK-NLGWLFLDENKIKD-L-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDITVLSRLTKLD 156 (605)
T ss_dssp GGGCT-TCCEEECCSSCCCC-C-T-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCS
T ss_pred hccCC-CCCEEECcCCCCCC-C-h-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCchhhcccCCCC
Confidence 44444 55566666665552 2 2 45556666666666666653 2 23555666666666666655 455566666
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.|+|++|.+++..| +..+++|+.|++++|+.
T Consensus 157 ~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 157 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 66666666665444 56666666666666654
No 107
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.54 E-value=2.7e-14 Score=109.43 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=58.0
Q ss_pred EEEeecC-CCCcccCCcccCCCCCCcEEEccc-CcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEecc
Q 038525 61 HIELVEC-SIKGELGSLNFSCFSNLQYINLWN-NDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDLS 133 (165)
Q Consensus 61 ~L~ls~n-~l~~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~ls 133 (165)
.++.+++ .++ .+ |. +..+++|++|+|++ |.+++..|..|+.+++|+.|+|++|+|+ .|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-cc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455665 555 35 55 66666666666664 6666555556666666666666666665 45566666666666
Q ss_pred CCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+|+|++..+..+..+. |+.|++++|+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCc
Confidence 6666644444444333 66666666653
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=110.29 Aligned_cols=107 Identities=13% Similarity=-0.007 Sum_probs=79.6
Q ss_pred hccccCeeEEEeecCCCCcccCC----cccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---------
Q 038525 53 RSLQLGWYHIELVECSIKGELGS----LNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--------- 119 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~~~~p----~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--------- 119 (165)
..++ +|++|++++|.+.+.. + ..+..+++|++|++++|.+++..|..++.+++|++|++++|++.
T Consensus 114 ~~~~-~L~~L~Ls~n~i~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGL-ALSSLRLRNVSWATGR-SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCB-CCSSCEEESCCCSSTT-SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCC-CCCEEEeecccccchh-hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 4455 6777788888777544 3 33456788888888888888777778888888888888888864
Q ss_pred CCccCcCCCEEeccCCCCCCcccc----cccCCCCCcEEEccCCccC
Q 038525 120 EIGKILLLQNLDLSHNNLSDSQFR----FVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 120 ~~~~l~~L~~L~ls~N~l~~~~p~----~~~~l~~L~~L~l~~n~~~ 162 (165)
.++.+++|++|++++|+++ .+|. .+..+++|++|++++|+..
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred hhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 2367888888888888886 3443 2567788899999888753
No 109
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.53 E-value=1e-13 Score=96.91 Aligned_cols=82 Identities=20% Similarity=0.140 Sum_probs=74.0
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
++++|++++|.+++.. |..|..+++|++|++++|++++..+..|..+++|++|++++|+++ .+..+++|++|++
T Consensus 34 ~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 6779999999999777 889999999999999999999655556789999999999999998 4888999999999
Q ss_pred cCCCCCCc
Q 038525 133 SHNNLSDS 140 (165)
Q Consensus 133 s~N~l~~~ 140 (165)
++|.+...
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 99999843
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=1.2e-13 Score=113.60 Aligned_cols=121 Identities=18% Similarity=0.196 Sum_probs=99.6
Q ss_pred cccccccccccCCCch-hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525 34 KTSFTQQRLVEGQDSS-QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112 (165)
Q Consensus 34 l~~l~~~~~~~~~~~~-~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 112 (165)
+..|..+.+..+.+.. ..+..++ +|++|++++|.+.+.. | +..+++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLP-NVTKLFLNGNKLTDIK-P--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCT-TCCEEECTTSCCCCCG-G--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChHHccCC-CCCEEEeeCCCCCCCh-h--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 4445555554444321 2367777 8999999999999644 4 8999999999999999984 44 789999999999
Q ss_pred cCCCCCC---CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 113 LRWKNLT---EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 113 ls~n~l~---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|.++ .+..+++|+.|+|++|.+++. ..+..+++|+.|++++|+..
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 9999998 688899999999999999864 57899999999999999863
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.51 E-value=9.8e-14 Score=106.05 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=96.7
Q ss_pred cccccccccccCCCchh-hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEE
Q 038525 34 KTSFTQQRLVEGQDSSQ-CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLN 112 (165)
Q Consensus 34 l~~l~~~~~~~~~~~~~-~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 112 (165)
+++|...++..+.+... .+..++ +|++|++++|.+.+ + ..+..+++|++|++++|.+++ + +.+..+++|+.|+
T Consensus 220 ~~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISD-I--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLF 293 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC-C--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCcCCEEEccCCccCCCcchhcCC-CCCEEECCCCccCC-C--hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEE
Confidence 34455555544444221 266777 89999999999984 3 368999999999999999995 4 4588999999999
Q ss_pred cCCCCCC-----CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 113 LRWKNLT-----EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 113 ls~n~l~-----~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++|+++ .++.+++|++|++++|.+++..| +..+++|+.|++++|+..
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999998 57889999999999999997665 889999999999999853
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=3.1e-15 Score=125.23 Aligned_cols=111 Identities=25% Similarity=0.331 Sum_probs=92.5
Q ss_pred CCccccccccccccC---CCchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCC
Q 038525 31 ENRKTSFTQQRLVEG---QDSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLK 107 (165)
Q Consensus 31 ~~~l~~l~~~~~~~~---~~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~ 107 (165)
...+..|..+++..+ .++...+ .++ +|++|+|++|.++ .+ |..|+.+++|++|+|++|.|+ .+|..|+.+++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~-~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYD-FLTRLYLNGNSLT-EL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCC-SCSCCBCTTSCCS-CC-CGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCC-CCCEEEeeCCcCc-cc-ChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 334455555555443 3455554 567 7999999999999 88 889999999999999999999 88999999999
Q ss_pred CCEEEcCCCCCC----CCccCcCCCEEeccCCCCCCccccccc
Q 038525 108 LKYLNLRWKNLT----EIGKILLLQNLDLSHNNLSDSQFRFVI 146 (165)
Q Consensus 108 L~~L~ls~n~l~----~~~~l~~L~~L~ls~N~l~~~~p~~~~ 146 (165)
|++|+|++|.++ .|+.+++|+.|+|++|.+++.+|..+.
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 999999999998 688999999999999999988887664
No 113
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.49 E-value=1.5e-13 Score=109.26 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=46.6
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCC
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQ 128 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~ 128 (165)
+..++ +|++|++++|.+.+.. + +..+++|++|++++|.+++..| +..+++|+.|++++|+++ .+..+++|+
T Consensus 261 ~~~l~-~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLT-KLTELKLGANQISNIS-P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 334 (466)
T ss_dssp GTTCT-TCSEEECCSSCCCCCG-G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCC
T ss_pred hhcCC-CCCEEECCCCccCccc-c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCC
Confidence 34444 4555555555555322 2 4555555555555555553222 444555555555555444 233444444
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.|++++|.+++. ..+..+++|+.|++++|+
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence 444444444422 233444444444444443
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.48 E-value=5.1e-13 Score=106.38 Aligned_cols=97 Identities=26% Similarity=0.284 Sum_probs=52.8
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCE
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQN 129 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~ 129 (165)
+..++ +|++|++++|.+++ + | ++.+++|++|++++|.+++. | ++.+++|++|++++|+++ .++.+++|++
T Consensus 60 l~~l~-~L~~L~Ls~n~l~~-~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLT-GLTKLICTSNNITT-L-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTY 131 (457)
T ss_dssp GGGCT-TCSEEECCSSCCSC-C-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCCCCTTCTTCCE
T ss_pred hcccC-CCCEEEccCCcCCe-E-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCeecCCCCCcCCE
Confidence 44445 56666666666653 3 3 55566666666666666532 2 555666666666666555 4455555555
Q ss_pred EeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525 130 LDLSHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 130 L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
|++++|.+++ +| +..+++|++|++++|
T Consensus 132 L~l~~N~l~~-l~--l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 132 LNCARNTLTE-ID--VSHNTQLTELDCHLN 158 (457)
T ss_dssp EECTTSCCSC-CC--CTTCTTCCEEECTTC
T ss_pred EECCCCccce-ec--cccCCcCCEEECCCC
Confidence 5555555553 22 344444444444444
No 115
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.48 E-value=5.6e-13 Score=106.15 Aligned_cols=78 Identities=21% Similarity=0.183 Sum_probs=53.5
Q ss_pred cCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEE
Q 038525 78 FSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT--EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQC 155 (165)
Q Consensus 78 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 155 (165)
++.+++|++|++++|++++ +| ++.+++|+.|++++|.++ .++.+++|+.|++++|++++ +| +..+++|++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 4556666666666666663 44 566667777777777766 56677777777777777775 45 66777777777
Q ss_pred ccCCcc
Q 038525 156 VWTCHS 161 (165)
Q Consensus 156 l~~n~~ 161 (165)
+++|+.
T Consensus 240 l~~N~l 245 (457)
T 3bz5_A 240 CSVNPL 245 (457)
T ss_dssp CCSSCC
T ss_pred eeCCcC
Confidence 777764
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=3.9e-13 Score=106.91 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=48.2
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCCCEEeccC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLLQNLDLSH 134 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L~~L~ls~ 134 (165)
+|++|++++|.+.+.. + +..+++|+.|++++|.+++..| +..+++|+.|++++|+++ .+..+++|+.|++++
T Consensus 288 ~L~~L~L~~n~l~~~~-~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 288 ALTNLELNENQLEDIS-P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGH 362 (466)
T ss_dssp TCSEEECCSSCCSCCG-G--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ccCeEEcCCCcccCch-h--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCC
Confidence 4555555555555322 2 4455555555555555553332 444555555555555554 344455555555555
Q ss_pred CCCCCcccccccCCCCCcEEEccCCc
Q 038525 135 NNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 135 N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
|++++..| +..+++|+.|++++|+
T Consensus 363 n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 363 NQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CccCccch--hhcCCCCCEEeccCCc
Confidence 55554433 4455555555555554
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.47 E-value=2e-13 Score=111.47 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=87.0
Q ss_pred hhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC------CCccCc
Q 038525 52 FRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT------EIGKIL 125 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~------~~~~l~ 125 (165)
+..++ +|++|++++|.++ .+ |..++.+++|+.|++++|.+++ +| .++.+++|+.|++++|+++ .++.++
T Consensus 459 ~~~l~-~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~ 533 (567)
T 1dce_A 459 LEQLL-LVTHLDLSHNRLR-AL-PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533 (567)
T ss_dssp GGGGT-TCCEEECCSSCCC-CC-CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred ccccc-cCcEeecCccccc-cc-chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCC
Confidence 67777 8999999999999 88 8899999999999999999995 77 8999999999999999987 456889
Q ss_pred CCCEEeccCCCCCCccccc---ccCCCCCcEEEc
Q 038525 126 LLQNLDLSHNNLSDSQFRF---VIPYLRLSVQCV 156 (165)
Q Consensus 126 ~L~~L~ls~N~l~~~~p~~---~~~l~~L~~L~l 156 (165)
+|+.|++++|.+++..|.. +..+++|+.|++
T Consensus 534 ~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999999998654422 334789998864
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=9.2e-16 Score=109.14 Aligned_cols=106 Identities=19% Similarity=0.189 Sum_probs=91.7
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC---CCccCcCC
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT---EIGKILLL 127 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~~L 127 (165)
.+..++ +|++|++++|.+.+ + | .+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+..+++|
T Consensus 43 ~~~~l~-~L~~L~ls~n~l~~-l-~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLK-ACKHLALSTNNIEK-I-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNL 117 (198)
T ss_dssp HHHHTT-TCSEEECSEEEESC-C-C-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHS
T ss_pred HHhcCC-CCCEEECCCCCCcc-c-c-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCC
Confidence 467777 88999999999985 7 7 8899999999999999999 78887777899999999999998 66778899
Q ss_pred CEEeccCCCCCCccc-ccccCCCCCcEEEccCCcc
Q 038525 128 QNLDLSHNNLSDSQF-RFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 128 ~~L~ls~N~l~~~~p-~~~~~l~~L~~L~l~~n~~ 161 (165)
+.|++++|.+++..+ ..+..+++|++|++++|+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 999999999985332 4788999999999999975
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.41 E-value=2e-13 Score=106.00 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=85.6
Q ss_pred ccccccccccCCCch-------hhhhccccCeeEEEeecCCCC--c---ccCCcccCCCCCCcEEEcccCcCC----CCC
Q 038525 35 TSFTQQRLVEGQDSS-------QCFRSLQLGWYHIELVECSIK--G---ELGSLNFSCFSNLQYINLWNNDLS----GSI 98 (165)
Q Consensus 35 ~~l~~~~~~~~~~~~-------~~~~~l~~~L~~L~ls~n~l~--~---~~~p~~~~~l~~L~~L~ls~N~l~----~~~ 98 (165)
++|..+.+..+.+.. ..+..++ +|++|++++|.+. | .. |..+..+++|++|++++|.++ +.+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~-~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLL-LEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHH-HTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHH-HHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 344444554444431 1233455 6778888888776 2 23 446777788888888888874 456
Q ss_pred CcCcCCCCCCCEEEcCCCCCC---------CC--ccCcCCCEEeccCCCCCC----cccccc-cCCCCCcEEEccCCccC
Q 038525 99 PPQIGSLLKLKYLNLRWKNLT---------EI--GKILLLQNLDLSHNNLSD----SQFRFV-IPYLRLSVQCVWTCHST 162 (165)
Q Consensus 99 p~~~~~l~~L~~L~ls~n~l~---------~~--~~l~~L~~L~ls~N~l~~----~~p~~~-~~l~~L~~L~l~~n~~~ 162 (165)
|..+..+++|+.|++++|.++ .+ +.+++|+.|++++|.+++ .+|..+ .++++|++|++++|+..
T Consensus 237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 777777888888888888876 12 347788888888888875 367666 55788888888888753
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=4.7e-12 Score=103.41 Aligned_cols=92 Identities=20% Similarity=0.154 Sum_probs=56.4
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCCc-cCcCCCEEeccCCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIG-KILLLQNLDLSHNN 136 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-~l~~L~~L~ls~N~ 136 (165)
+|++|++++|.+++ + |. +.. +|++|++++|.+++ +|. .+++|+.|++++|.++.+. .+++|+.|++++|.
T Consensus 101 ~L~~L~Ls~N~l~~-i-p~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 101 SLEYLDACDNRLST-L-PE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQ 171 (571)
T ss_dssp TCCEEECCSSCCSC-C-CC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCC-c-ch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCCcCCCcCEEECCCCC
Confidence 55566666666664 4 44 443 66666666666663 554 4566777777777666211 44567777777777
Q ss_pred CCCcccccccCCCCCcEEEccCCccC
Q 038525 137 LSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 137 l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+++ +|. +. ++|+.|++++|++.
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCC-cch-hh--CCCCEEECcCCCCC
Confidence 764 555 44 66777777777643
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.38 E-value=5.6e-14 Score=106.90 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=30.6
Q ss_pred hccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccC-cCCCC-CCcCcCCCCCCCEEEcCCC
Q 038525 53 RSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNN-DLSGS-IPPQIGSLLKLKYLNLRWK 116 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N-~l~~~-~p~~~~~l~~L~~L~ls~n 116 (165)
..++ +|++|++++|.+.+.. +..++.+++|++|++++| .+++. +|..+..+++|+.|++++|
T Consensus 115 ~~~~-~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 115 SQCS-KLQNLSLEGLRLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp TTBC-CCSEEECTTCBCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred hhCC-CCCEEeCcCcccCHHH-HHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 3444 5555555555555444 445555555555555555 34421 3333444444444444444
No 122
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.9e-12 Score=99.09 Aligned_cols=85 Identities=18% Similarity=0.187 Sum_probs=73.1
Q ss_pred hhccccCeeEEEeec-CCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCc
Q 038525 52 FRSLQLGWYHIELVE-CSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKIL 125 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~-n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~ 125 (165)
+..++ +|++|+|++ |.+.+.. +..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|+|+ .+..++
T Consensus 27 l~~~~-~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAE-NLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS 104 (347)
T ss_dssp SCSCS-CCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred CCCCC-CeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC
Confidence 45555 788999996 9999665 788999999999999999999888888999999999999999998 344444
Q ss_pred CCCEEeccCCCCCC
Q 038525 126 LLQNLDLSHNNLSD 139 (165)
Q Consensus 126 ~L~~L~ls~N~l~~ 139 (165)
|+.|++.+|.+..
T Consensus 105 -L~~l~l~~N~~~c 117 (347)
T 2ifg_A 105 -LQELVLSGNPLHC 117 (347)
T ss_dssp -CCEEECCSSCCCC
T ss_pred -ceEEEeeCCCccC
Confidence 9999999999874
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.37 E-value=1.5e-12 Score=100.03 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=60.4
Q ss_pred chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcE-EEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525 48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQY-INLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI 121 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~-L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~ 121 (165)
++..|.+++ +|++|++++|++.+.+++..|.++++++. +.+++|++++..|..|..+++|++|++++|+++ .+
T Consensus 46 ~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~ 124 (350)
T 4ay9_X 46 QKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 124 (350)
T ss_dssp CTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred CHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence 444555555 56666666666544442344555555543 344556665444555666666666666666655 22
Q ss_pred ccCcCCCEEeccC-CCCCCcccccccCCC-CCcEEEccCCcc
Q 038525 122 GKILLLQNLDLSH-NNLSDSQFRFVIPYL-RLSVQCVWTCHS 161 (165)
Q Consensus 122 ~~l~~L~~L~ls~-N~l~~~~p~~~~~l~-~L~~L~l~~n~~ 161 (165)
....++..+++.+ |.+....+..|..+. .++.|++++|+.
T Consensus 125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 3334455555543 344433333444443 466677777764
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=6.2e-12 Score=102.69 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=63.8
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCCccC-cCC-------CE
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEIGKI-LLL-------QN 129 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~~l-~~L-------~~ 129 (165)
+|++|++++|.+++ + |. .+++|++|++++|.+++ +|. |. ++|+.|++++|.++.+..+ .+| +.
T Consensus 141 ~L~~L~Ls~N~l~~-l-p~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~ 211 (571)
T 3cvr_A 141 LLEYINADNNQLTM-L-PE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIF 211 (571)
T ss_dssp TCCEEECCSSCCSC-C-CC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCCCC--------CCEE
T ss_pred cccEEeCCCCccCc-C-CC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhhHHHhhhcccccceE
Confidence 45566666666653 4 43 45667777777777774 565 54 6777888888777722111 156 88
Q ss_pred EeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 130 LDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 130 L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
|++++|.++ .+|..+..+++|+.|++++|+..
T Consensus 212 L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp EECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred EecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 888888888 57887888889999999988753
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.35 E-value=2.9e-12 Score=98.45 Aligned_cols=101 Identities=20% Similarity=0.154 Sum_probs=64.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCC-cCcCCCCCCCE-EEcCCCCCC-----CCccCcCCCEE
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIP-PQIGSLLKLKY-LNLRWKNLT-----EIGKILLLQNL 130 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~-L~ls~n~l~-----~~~~l~~L~~L 130 (165)
++++|++++|+++ .+++..|.++++|++|++++|.+.+.+| ..|.++++++. +.+.+|+++ .|..+++|++|
T Consensus 31 ~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4557777777777 3424567777777777777777654444 34566666654 445566666 46677777777
Q ss_pred eccCCCCCCcccccccCCCCCcEEEccCC
Q 038525 131 DLSHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 131 ~ls~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
++++|.+++..+..+....++..+++.++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred cccccccccCCchhhcccchhhhhhhccc
Confidence 77777776555555556666666666543
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=2.2e-13 Score=105.76 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=49.2
Q ss_pred CeeEEEeecCCCC-cccCC---cccCCCCCCcEEEcccCcCCC-----CCCcCcCCCCCCCEEEcCCCCCC---------
Q 038525 58 GWYHIELVECSIK-GELGS---LNFSCFSNLQYINLWNNDLSG-----SIPPQIGSLLKLKYLNLRWKNLT--------- 119 (165)
Q Consensus 58 ~L~~L~ls~n~l~-~~~~p---~~~~~l~~L~~L~ls~N~l~~-----~~p~~~~~l~~L~~L~ls~n~l~--------- 119 (165)
+|++|++++|.+. +.+ + ..+..+++|++|++++|.++. ..|..+..+++|+.|++++|.++
T Consensus 160 ~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 160 PLRSIICGRNRLENGSM-KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCEEECCSSCCTGGGH-HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCcEEECCCCCCCcHHH-HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 4445555555543 222 2 233344555555555555541 12224445555555555555552
Q ss_pred CCccCcCCCEEeccCCCCCCc----cccccc--CCCCCcEEEccCCcc
Q 038525 120 EIGKILLLQNLDLSHNNLSDS----QFRFVI--PYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 ~~~~l~~L~~L~ls~N~l~~~----~p~~~~--~l~~L~~L~l~~n~~ 161 (165)
.+..+++|++|++++|.+++. +|..+. .+++|+.|++++|+.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 344555555555555555433 333442 255555555555543
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=7e-11 Score=93.97 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=48.4
Q ss_pred CCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 82 SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 82 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++|++|++++|.+++ +| .++.+++|++|++++|+++.+ ....+|++|++++|.+++ +| .+.++++|++|++++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc
Confidence 466777777777763 55 466777777777777776622 123466777777777664 45 46666666666666665
Q ss_pred c
Q 038525 161 S 161 (165)
Q Consensus 161 ~ 161 (165)
.
T Consensus 207 l 207 (454)
T 1jl5_A 207 L 207 (454)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.32 E-value=2.9e-11 Score=99.71 Aligned_cols=75 Identities=21% Similarity=0.076 Sum_probs=61.9
Q ss_pred CCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 82 SNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 82 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
++|++|++++|.++ .+| ..+++|+.|++++|.++.+ ..+++|+.|++++|+++ .+|..+.++++|+.|++++|+
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCC
Confidence 67888888888888 456 3567888999999988822 26678999999999998 778899999999999999997
Q ss_pred c
Q 038525 161 S 161 (165)
Q Consensus 161 ~ 161 (165)
.
T Consensus 296 l 296 (622)
T 3g06_A 296 L 296 (622)
T ss_dssp C
T ss_pred C
Confidence 5
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.31 E-value=7e-13 Score=100.79 Aligned_cols=102 Identities=21% Similarity=0.131 Sum_probs=71.2
Q ss_pred CeeEEEeecCCCCcc-cCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCC-CCC------CCccCcCCCE
Q 038525 58 GWYHIELVECSIKGE-LGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWK-NLT------EIGKILLLQN 129 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n-~l~------~~~~l~~L~~ 129 (165)
+|++|++++|.+.+. + |..+..+++|++|++++|.+++..|..++.+++|++|++++| .++ .+..+++|++
T Consensus 94 ~L~~L~L~~~~l~~~~~-~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTL-HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp CCCEEECTTCEECHHHH-HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCEEEccCCCcCHHHH-HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 566777777776644 5 666677777777777777776666666777777777777777 455 2556777777
Q ss_pred EeccCC-CCCCc-ccccccCCC-CCcEEEccCCc
Q 038525 130 LDLSHN-NLSDS-QFRFVIPYL-RLSVQCVWTCH 160 (165)
Q Consensus 130 L~ls~N-~l~~~-~p~~~~~l~-~L~~L~l~~n~ 160 (165)
|++++| .+++. ++..+..++ +|++|++++|+
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 777777 77643 466667777 77777777774
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.30 E-value=4e-11 Score=95.38 Aligned_cols=98 Identities=16% Similarity=0.074 Sum_probs=53.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCc-------------------CcCCCCCCCEEEcCCCCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPP-------------------QIGSLLKLKYLNLRWKNL 118 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-------------------~~~~l~~L~~L~ls~n~l 118 (165)
+|++|++++|.+++ + | .|+.+++|++|++++|++++ +|. .++.+++|++|++++|.+
T Consensus 132 ~L~~L~L~~n~l~~-l-p-~~~~l~~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-L-P-ELQNSSFLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSS-C-C-CCTTCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCC-C-c-ccCCCCCCCEEECCCCcCcc-cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcC
Confidence 45566666666653 4 4 35555555555555555552 332 344455555555555554
Q ss_pred CCCc-cCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 119 TEIG-KILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 119 ~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
+.+. ..++|++|++++|.++ .+| .+..+++|++|++++|+.
T Consensus 208 ~~l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 208 KKLPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp SSCCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC
T ss_pred CcCCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcC
Confidence 4211 1235556666666665 455 366777777777777764
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=4.6e-13 Score=103.35 Aligned_cols=104 Identities=16% Similarity=0.131 Sum_probs=66.3
Q ss_pred CeeEEEeecCCCCcccCCcc----cCCC-CCCcEEEcccCcCCCCCCcCc----CC-CCCCCEEEcCCCCCC--------
Q 038525 58 GWYHIELVECSIKGELGSLN----FSCF-SNLQYINLWNNDLSGSIPPQI----GS-LLKLKYLNLRWKNLT-------- 119 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~----~~~l-~~L~~L~ls~N~l~~~~p~~~----~~-l~~L~~L~ls~n~l~-------- 119 (165)
+|++|++++|.+++.. +.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.++
T Consensus 81 ~L~~L~Ls~n~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKS-SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CccEEECcCCcCChHH-HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 6777777777776544 443 3333 677777887777775444333 23 257788888888776
Q ss_pred -CCccCc-CCCEEeccCCCCCCcccccc----cCC-CCCcEEEccCCccC
Q 038525 120 -EIGKIL-LLQNLDLSHNNLSDSQFRFV----IPY-LRLSVQCVWTCHST 162 (165)
Q Consensus 120 -~~~~l~-~L~~L~ls~N~l~~~~p~~~----~~l-~~L~~L~l~~n~~~ 162 (165)
.+..++ +|++|++++|.+++..+..+ ..+ ++|+.|++++|+..
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 123343 78888888888765555433 334 47888888888753
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=1.6e-14 Score=102.74 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=84.2
Q ss_pred CeeEEEeecCCCCcccCCc------ccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCC
Q 038525 58 GWYHIELVECSIKGELGSL------NFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLL 127 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~------~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L 127 (165)
.++.++++.+.+.+.. |. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~-~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMI-PPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCC-TTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHC
T ss_pred cccCcchheeEecccc-CcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcC
Confidence 4556666666666666 55 89999999999999999995 77 8899999999999999988 34456889
Q ss_pred CEEeccCCCCCCcccccccCCCCCcEEEccCCccC
Q 038525 128 QNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 128 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+.|++++|.+++ +| .+..+++|++|++++|+..
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~ 128 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT 128 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC
Confidence 999999999985 56 6888999999999999865
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=1.3e-12 Score=100.74 Aligned_cols=112 Identities=16% Similarity=0.208 Sum_probs=84.4
Q ss_pred hhhhccccCeeEEEeecCCCCcccCCcccCCC-----CCCcEEEcccCcCCCCCCcCc----CCC-CCCCEEEcCCCCCC
Q 038525 50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCF-----SNLQYINLWNNDLSGSIPPQI----GSL-LKLKYLNLRWKNLT 119 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l-----~~L~~L~ls~N~l~~~~p~~~----~~l-~~L~~L~ls~n~l~ 119 (165)
..+..++.+|++|++++|.+.+.. +..+..+ ++|++|++++|.+++..+..+ ..+ ++|++|++++|.++
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKN-SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHhCCCceeEEECcCCCCCHHH-HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 345555546889999999998665 6666664 899999999999986666544 334 78999999999988
Q ss_pred ---------CCcc-CcCCCEEeccCCCCCC----cccccccCCC-CCcEEEccCCccC
Q 038525 120 ---------EIGK-ILLLQNLDLSHNNLSD----SQFRFVIPYL-RLSVQCVWTCHST 162 (165)
Q Consensus 120 ---------~~~~-l~~L~~L~ls~N~l~~----~~p~~~~~l~-~L~~L~l~~n~~~ 162 (165)
.+.. .++|++|++++|.+++ .++..+...+ +|++|++++|+..
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 1333 3689999999999974 3344455665 8999999999864
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.22 E-value=1.4e-10 Score=95.54 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=39.6
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCCCC-ccCcCCCEEeccCCC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLTEI-GKILLLQNLDLSHNN 136 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~~l~~L~~L~ls~N~ 136 (165)
+|++|++++|+++ .+ |. .+++|++|++++|.++ .+|. .+++|+.|++++|+++.+ ..+++|++|++++|.
T Consensus 82 ~L~~L~Ls~N~l~-~l-p~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 82 ELRTLEVSGNQLT-SL-PV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152 (622)
T ss_dssp TCCEEEECSCCCS-CC-CC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred CCCEEEcCCCcCC-cC-CC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCc
Confidence 5667777777766 44 43 4566666666666666 3443 344555555555555411 123455555555555
Q ss_pred CC
Q 038525 137 LS 138 (165)
Q Consensus 137 l~ 138 (165)
++
T Consensus 153 l~ 154 (622)
T 3g06_A 153 LA 154 (622)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.20 E-value=1.1e-12 Score=103.66 Aligned_cols=106 Identities=13% Similarity=0.026 Sum_probs=75.0
Q ss_pred cccCeeEEEeecCCCCcccCCcccC-----CCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC-----C
Q 038525 55 LQLGWYHIELVECSIKGELGSLNFS-----CFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT-----E 120 (165)
Q Consensus 55 l~~~L~~L~ls~n~l~~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~-----~ 120 (165)
++ +|++|++++|.+.+.. +..+. ..++|++|++++|.+++. +|..+..+++|+.|++++|.++ .
T Consensus 283 ~~-~L~~L~Ls~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 283 KE-SLKELSLAGNELGDEG-ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp CT-TCCEEECTTCCCHHHH-HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred CC-CcceEECCCCCCchHH-HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 44 5667777777765332 22222 225777777777777644 3455666788999999998887 2
Q ss_pred Ccc-----CcCCCEEeccCCCCCC----cccccccCCCCCcEEEccCCccC
Q 038525 121 IGK-----ILLLQNLDLSHNNLSD----SQFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 121 ~~~-----l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+..
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 221 5689999999999875 67888888999999999998753
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.17 E-value=4.8e-12 Score=99.96 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=59.6
Q ss_pred CeeEEEeecCCCCcccCCcccC-----CCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---------
Q 038525 58 GWYHIELVECSIKGELGSLNFS-----CFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT--------- 119 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~-----~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~--------- 119 (165)
+|++|++++|.+.... +..+. ..++|++|++++|.+++. ++..+..+++|+.|++++|.++
T Consensus 171 ~L~~L~L~~n~i~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 171 DFKELTVSNNDINEAG-VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TCCEEECCSSBCHHHH-HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCEEECcCCCcchHH-HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 5556666666554322 22222 244666666666666532 3445555667777777777665
Q ss_pred -CCccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525 120 -EIGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 -~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|+.
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 112456677777777776632 455566667777777776653
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.10 E-value=1.2e-11 Score=96.07 Aligned_cols=125 Identities=15% Similarity=0.126 Sum_probs=82.6
Q ss_pred cccccccccCCCchhh----hhccccCeeEEEeecCCCCcccCCccc-----CCCCCCcEEEcccCcCCCC----CCcCc
Q 038525 36 SFTQQRLVEGQDSSQC----FRSLQLGWYHIELVECSIKGELGSLNF-----SCFSNLQYINLWNNDLSGS----IPPQI 102 (165)
Q Consensus 36 ~l~~~~~~~~~~~~~~----~~~l~~~L~~L~ls~n~l~~~~~p~~~-----~~l~~L~~L~ls~N~l~~~----~p~~~ 102 (165)
.|..+++..+.+.... ...++ ++++|++++|.+...- ...+ ...++|++|++++|.++.. ++..+
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~-~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEA-CKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHH-HHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHH-HHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 4455555555554332 22344 6778888888876432 2333 2457788888888887631 33344
Q ss_pred CCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCccC
Q 038525 103 GSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 103 ~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
...++|++|++++|.++ .+...++|+.|++++|.++.. ++..+...++|++|++++|++.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 66788888888888887 355667888888888888642 3344556788889998888753
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=1.1e-09 Score=83.35 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=55.6
Q ss_pred CCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCC-EEeccCCCCCCcccccccCCCCCcEE
Q 038525 81 FSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQ-NLDLSHNNLSDSQFRFVIPYLRLSVQ 154 (165)
Q Consensus 81 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~-~L~ls~N~l~~~~p~~~~~l~~L~~L 154 (165)
+++|+.+++++|.++...+..|.++.+|+.+++++| ++ +|.++++|+ .+++.+ .++...+..|.++.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 567777777777777444456777777777777776 54 677777777 777777 5664555677777778877
Q ss_pred EccCCcc
Q 038525 155 CVWTCHS 161 (165)
Q Consensus 155 ~l~~n~~ 161 (165)
++++|+.
T Consensus 303 ~l~~n~i 309 (329)
T 3sb4_A 303 LATGDKI 309 (329)
T ss_dssp EECSSCC
T ss_pred EeCCCcc
Confidence 7766653
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=1.4e-09 Score=82.76 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=85.8
Q ss_pred cccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCC-EEEcCCCCCC-----CCccCcCCC
Q 038525 55 LQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLK-YLNLRWKNLT-----EIGKILLLQ 128 (165)
Q Consensus 55 l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~-~L~ls~n~l~-----~~~~l~~L~ 128 (165)
.+ +|+++++++|+++ .+++..|.++++|+.+++++| ++..-+..|.++.+|+ .+++++ .++ +|.++++|+
T Consensus 225 ~~-~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MP-NLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CT-TCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cC-CCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 44 7889999999998 454888999999999999998 7756667899999999 999998 565 899999999
Q ss_pred EEeccCCCCCCcccccccCCCCCcEEEc
Q 038525 129 NLDLSHNNLSDSQFRFVIPYLRLSVQCV 156 (165)
Q Consensus 129 ~L~ls~N~l~~~~p~~~~~l~~L~~L~l 156 (165)
.+++++|.++...+..|.++++|+.++.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999999776779999999999874
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.92 E-value=4.7e-11 Score=92.79 Aligned_cols=104 Identities=16% Similarity=0.119 Sum_probs=80.7
Q ss_pred CeeEEEeecCCCCcccCCcc-cCCCCCCcEEEcccCcCCCCCCcCc-----CCCCCCCEEEcCCCCCC---------CCc
Q 038525 58 GWYHIELVECSIKGELGSLN-FSCFSNLQYINLWNNDLSGSIPPQI-----GSLLKLKYLNLRWKNLT---------EIG 122 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p~~~-----~~l~~L~~L~ls~n~l~---------~~~ 122 (165)
+|++|++++|.+.... ... ...+++|+.|++++|.++......+ ...+.|+.|++++|.++ .+.
T Consensus 102 ~L~~L~Ls~n~l~~~~-~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 102 ALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp CEEEEECTTCCCCHHH-HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCCHHH-HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 7999999999987432 222 2346789999999999974433333 34678999999999997 346
Q ss_pred cCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCccC
Q 038525 123 KILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHST 162 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~~ 162 (165)
..++|++|+|++|.++.. +++.+...++|+.|++++|+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 788999999999998642 3566778889999999999864
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.88 E-value=3.9e-10 Score=79.34 Aligned_cols=108 Identities=9% Similarity=0.016 Sum_probs=83.0
Q ss_pred hhccccCeeEEEeecC-CCCcc----cCCcccCCCCCCcEEEcccCcCCCC----CCcCcCCCCCCCEEEcCCCCCC---
Q 038525 52 FRSLQLGWYHIELVEC-SIKGE----LGSLNFSCFSNLQYINLWNNDLSGS----IPPQIGSLLKLKYLNLRWKNLT--- 119 (165)
Q Consensus 52 ~~~l~~~L~~L~ls~n-~l~~~----~~p~~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~ls~n~l~--- 119 (165)
+...+ .+++|++++| .+... + ...+...++|++|++++|.+... +...+...+.|++|++++|.++
T Consensus 32 l~~~~-~L~~L~L~~n~~i~~~g~~~l-~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDP-DLEEVNLNNIMNIPVPTLKAC-AEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCT-TCCEEECTTCTTCCHHHHHHH-HHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCC-CCCEEEecCCCCCCHHHHHHH-HHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 33444 6889999999 88632 3 44566778999999999998732 2334455688999999999998
Q ss_pred ------CCccCcCCCEEec--cCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525 120 ------EIGKILLLQNLDL--SHNNLSDS----QFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 ------~~~~l~~L~~L~l--s~N~l~~~----~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.+...+.|++|++ ++|.+... +.+.+...++|+.|++++|+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 5677788999999 88999743 345566778999999999974
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.80 E-value=2.5e-09 Score=79.44 Aligned_cols=78 Identities=28% Similarity=0.249 Sum_probs=61.4
Q ss_pred CCCCCCcEEEcccCcCCC--CCCcCcCCCCCCCEEEcCCCCCC---CCccCc--CCCEEeccCCCCCCcccc-------c
Q 038525 79 SCFSNLQYINLWNNDLSG--SIPPQIGSLLKLKYLNLRWKNLT---EIGKIL--LLQNLDLSHNNLSDSQFR-------F 144 (165)
Q Consensus 79 ~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~ls~n~l~---~~~~l~--~L~~L~ls~N~l~~~~p~-------~ 144 (165)
..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|+++ .+..+. +|+.|++++|.+.+.+|+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 457889999999999986 34566678899999999999998 344444 899999999999876652 4
Q ss_pred ccCCCCCcEEEc
Q 038525 145 VIPYLRLSVQCV 156 (165)
Q Consensus 145 ~~~l~~L~~L~l 156 (165)
+..+++|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 677888888874
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.76 E-value=6.8e-10 Score=90.15 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=53.4
Q ss_pred cCCCCCCcEEEcccC--cCCCCCCcCcC-CCCCCCEEEcCCCCCC------CCccCcCCCEEeccCCCCCCc-ccccccC
Q 038525 78 FSCFSNLQYINLWNN--DLSGSIPPQIG-SLLKLKYLNLRWKNLT------EIGKILLLQNLDLSHNNLSDS-QFRFVIP 147 (165)
Q Consensus 78 ~~~l~~L~~L~ls~N--~l~~~~p~~~~-~l~~L~~L~ls~n~l~------~~~~l~~L~~L~ls~N~l~~~-~p~~~~~ 147 (165)
+.++++|++|+++++ .+++..+..+. .+++|++|++++|+++ .+..+++|+.|++++|.+++. ++..+..
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 444566666666532 24433333332 3677788888877776 245677888888888887543 3444556
Q ss_pred CCCCcEEEccCCccC
Q 038525 148 YLRLSVQCVWTCHST 162 (165)
Q Consensus 148 l~~L~~L~l~~n~~~ 162 (165)
+++|++|++++|+.+
T Consensus 512 l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 512 LPSLRYLWVQGYRAS 526 (592)
T ss_dssp CSSCCEEEEESCBCC
T ss_pred cCccCeeECcCCcCC
Confidence 788888888888753
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.66 E-value=7.2e-09 Score=84.12 Aligned_cols=20 Identities=0% Similarity=-0.321 Sum_probs=9.6
Q ss_pred ccccccCCCCCcEEEccCCc
Q 038525 141 QFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 141 ~p~~~~~l~~L~~L~l~~n~ 160 (165)
+|..+..+++|++|++++|.
T Consensus 285 l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 285 MPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GGGGGGGGGGCCEEEETTCC
T ss_pred HHHHHhhcCCCcEEecCCCc
Confidence 34444444455555555444
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.61 E-value=2.1e-08 Score=74.46 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=60.1
Q ss_pred hccccCeeEEEeecCCCCc--ccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCC--CCCEEEcCCCCCC---------
Q 038525 53 RSLQLGWYHIELVECSIKG--ELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLL--KLKYLNLRWKNLT--------- 119 (165)
Q Consensus 53 ~~l~~~L~~L~ls~n~l~~--~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~--~L~~L~ls~n~l~--------- 119 (165)
..++ +|++|+|++|.+++ .+ |..+..+++|+.|+|++|++++. ..+..+. +|+.|++++|.+.
T Consensus 167 ~~l~-~L~~L~Ls~N~l~~l~~l-~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIP-ELLSLNLSNNRLYRLDDM-SSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCT-TCCEEECTTSCCCCCGGG-TTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCC-CCCEEECCCCCCCCCccc-hhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhH
Confidence 3456 78999999999997 44 56677899999999999999954 3344444 9999999999987
Q ss_pred ---CCccCcCCCEEe
Q 038525 120 ---EIGKILLLQNLD 131 (165)
Q Consensus 120 ---~~~~l~~L~~L~ 131 (165)
.+..+++|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 156788898886
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.52 E-value=8.4e-09 Score=83.68 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=55.5
Q ss_pred cCCCCCCcEEEcccCcCCCCCCcCcCC-CCCCCEEEcCCCCCC-----CC-ccCcCCCEEeccCCCCCCcccc-cccCCC
Q 038525 78 FSCFSNLQYINLWNNDLSGSIPPQIGS-LLKLKYLNLRWKNLT-----EI-GKILLLQNLDLSHNNLSDSQFR-FVIPYL 149 (165)
Q Consensus 78 ~~~l~~L~~L~ls~N~l~~~~p~~~~~-l~~L~~L~ls~n~l~-----~~-~~l~~L~~L~ls~N~l~~~~p~-~~~~l~ 149 (165)
+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.++ .+ ..+++|+.|++++|.+++..+. ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 44556677777755 444333333443 677888888888876 22 5678888888888888543333 445578
Q ss_pred CCcEEEccCCcc
Q 038525 150 RLSVQCVWTCHS 161 (165)
Q Consensus 150 ~L~~L~l~~n~~ 161 (165)
+|+.|++++|+.
T Consensus 507 ~L~~L~l~~~~~ 518 (594)
T 2p1m_B 507 TMRSLWMSSCSV 518 (594)
T ss_dssp GSSEEEEESSCC
T ss_pred CCCEEeeeCCCC
Confidence 888888888875
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=1.3e-06 Score=68.35 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=62.9
Q ss_pred chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC-----CCCCcCcCCCCCCCEEEcCCCCCC---
Q 038525 48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS-----GSIPPQIGSLLKLKYLNLRWKNLT--- 119 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~-----~~~p~~~~~l~~L~~L~ls~n~l~--- 119 (165)
+...|.. . +|+.+.+. +.+. .+++..|.++++|+.+++.+|.+. ...+..|.++.+|+.+++.. .++
T Consensus 241 ~~~aF~~-~-~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~ 315 (401)
T 4fdw_A 241 GQEAFRE-S-GITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG 315 (401)
T ss_dssp CTTTTTT-C-CCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC
T ss_pred ccccccc-C-CccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh
Confidence 3344444 2 45566663 3344 222666777777777777766553 23345666777777777763 344
Q ss_pred --CCccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 120 --EIGKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 120 --~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.|.++++|+.+.+..| ++..-+..|.++ +|+.+.+++|.
T Consensus 316 ~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 316 QGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred hhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 6667777777777544 543445566666 77777776664
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.43 E-value=4.2e-08 Score=79.57 Aligned_cols=101 Identities=14% Similarity=0.136 Sum_probs=54.6
Q ss_pred CeeEEEeecC-CCCcc-cCCcccCCCCCCcEEEcccCcCCCCCCcCcC----CCCCCCEEEcCCCC--CC------CCcc
Q 038525 58 GWYHIELVEC-SIKGE-LGSLNFSCFSNLQYINLWNNDLSGSIPPQIG----SLLKLKYLNLRWKN--LT------EIGK 123 (165)
Q Consensus 58 ~L~~L~ls~n-~l~~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~----~l~~L~~L~ls~n~--l~------~~~~ 123 (165)
+|++|++++| .+... + +..+..+++|++|++++|.+++..+..+. .+++|+.|++++|. ++ .+..
T Consensus 131 ~L~~L~L~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGL-AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TCCEEEEESCEEEEHHHH-HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCcEEeCCCcCCCCHHHH-HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 5666666666 33321 2 33333566677777776666544333322 45567777776665 32 1234
Q ss_pred CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
+++|++|++++|...+.+|..+..+++|+.|+++.+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 566777777666222235555666666666665433
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.3e-07 Score=66.27 Aligned_cols=87 Identities=13% Similarity=0.004 Sum_probs=69.4
Q ss_pred CcccCCCCCCcEEEcccC-cCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc
Q 038525 75 SLNFSCFSNLQYINLWNN-DLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS 140 (165)
Q Consensus 75 p~~~~~l~~L~~L~ls~N-~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~ 140 (165)
...+...+.|++|++++| .+... +...+...++|++|++++|.+. .+...+.|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345667899999999999 88732 2344566789999999999998 345568899999999999743
Q ss_pred ----ccccccCCCCCcEEEc--cCCcc
Q 038525 141 ----QFRFVIPYLRLSVQCV--WTCHS 161 (165)
Q Consensus 141 ----~p~~~~~l~~L~~L~l--~~n~~ 161 (165)
+.+.+...++|++|++ ++|+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 4567788899999999 77875
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=2.3e-07 Score=64.64 Aligned_cols=78 Identities=13% Similarity=0.059 Sum_probs=44.3
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCc-CCCCCCcCcCCC----CCCCEEEcCCCC-CC-----CCccCcC
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNND-LSGSIPPQIGSL----LKLKYLNLRWKN-LT-----EIGKILL 126 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l----~~L~~L~ls~n~-l~-----~~~~l~~ 126 (165)
.|++||++++.++..- -..+.++++|+.|+|+++. ++..--..+..+ ++|+.|++++|. ++ .+..+++
T Consensus 62 ~L~~LDLs~~~Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4667777777665332 3345666777777777663 442222223332 246666666653 55 4555666
Q ss_pred CCEEeccCCC
Q 038525 127 LQNLDLSHNN 136 (165)
Q Consensus 127 L~~L~ls~N~ 136 (165)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.31 E-value=3.8e-06 Score=65.75 Aligned_cols=111 Identities=8% Similarity=0.025 Sum_probs=89.9
Q ss_pred CCchhhhhccccCeeEEEeecCCCC----cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC--
Q 038525 46 QDSSQCFRSLQLGWYHIELVECSIK----GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-- 119 (165)
Q Consensus 46 ~~~~~~~~~l~~~L~~L~ls~n~l~----~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-- 119 (165)
.++...|...+ +|+.+++.+|.+. ..+++..|.++++|+.+++.+ .++..-...|.++.+|+.+.+..| ++
T Consensus 261 ~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 261 NIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp EECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred EEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 35677788888 8999999998764 123378899999999999994 577455678999999999999766 44
Q ss_pred ---CCccCcCCCEEeccCCCCCCcccccccCCC-CCcEEEccCCc
Q 038525 120 ---EIGKILLLQNLDLSHNNLSDSQFRFVIPYL-RLSVQCVWTCH 160 (165)
Q Consensus 120 ---~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~-~L~~L~l~~n~ 160 (165)
+|.++ +|+.+++++|.+....+..|.+++ .++.+++-.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 78899 999999999998866667788885 78899887664
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=2.4e-07 Score=71.71 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=63.2
Q ss_pred CeeEEEeecCCCCcccCCcccC--CCCCCcEEEccc--CcCCCC-----CCcCc--CCCCCCCEEEcCCCCCC-------
Q 038525 58 GWYHIELVECSIKGELGSLNFS--CFSNLQYINLWN--NDLSGS-----IPPQI--GSLLKLKYLNLRWKNLT------- 119 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~--~l~~L~~L~ls~--N~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~------- 119 (165)
+|++|++..+.+.... ...+. .+++|+.|+|+. |...+. +...+ ..+++|++|++++|.+.
T Consensus 194 ~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 194 NLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 4555555555443221 11222 577888888753 221111 11122 24688899999888876
Q ss_pred -CCccCcCCCEEeccCCCCCCc----ccccccCCCCCcEEEccCCcc
Q 038525 120 -EIGKILLLQNLDLSHNNLSDS----QFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 -~~~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~l~~n~~ 161 (165)
....+++|++|+|+.|.+.+. ++..+.++++|+.|++++|..
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 224578899999999988653 344455678899999998875
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.19 E-value=5.9e-07 Score=62.59 Aligned_cols=87 Identities=7% Similarity=0.008 Sum_probs=66.8
Q ss_pred CcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCC-CC-----CCccC----cCCCEEeccCCC-CCCcccc
Q 038525 75 SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKN-LT-----EIGKI----LLLQNLDLSHNN-LSDSQFR 143 (165)
Q Consensus 75 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~-l~-----~~~~l----~~L~~L~ls~N~-l~~~~p~ 143 (165)
|.....-..|+.||++++.++..--..+..+++|+.|+++++. ++ .+..+ ++|++|+++++. ++..--.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4433334579999999999875544567889999999999995 77 44443 479999999985 7643334
Q ss_pred cccCCCCCcEEEccCCcc
Q 038525 144 FVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 144 ~~~~l~~L~~L~l~~n~~ 161 (165)
.+.++++|+.|++++|..
T Consensus 134 ~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp HGGGCTTCCEEEEESCTT
T ss_pred HHhcCCCCCEEECCCCCC
Confidence 577899999999999864
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.95 E-value=3.9e-06 Score=64.86 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=70.1
Q ss_pred hhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcC--CCCCCCEEEcCC--CC------CC-
Q 038525 51 CFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIG--SLLKLKYLNLRW--KN------LT- 119 (165)
Q Consensus 51 ~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~--~l~~L~~L~ls~--n~------l~- 119 (165)
.+...| +|++|++++|.-. .+ +. +. +++|+.|++..+.++......+. .+++|+.|+|+. |. +.
T Consensus 167 ll~~~P-~L~~L~L~g~~~l-~l-~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 167 VLDAMP-LLNNLKIKGTNNL-SI-GK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHTCT-TCCEEEEECCBTC-BC-CS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHhcCC-CCcEEEEeCCCCc-ee-cc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 345556 7889999887322 33 33 33 78899999988877633223333 688999998853 21 11
Q ss_pred -----CCccCcCCCEEeccCCCCCCccccccc---CCCCCcEEEccCCcc
Q 038525 120 -----EIGKILLLQNLDLSHNNLSDSQFRFVI---PYLRLSVQCVWTCHS 161 (165)
Q Consensus 120 -----~~~~l~~L~~L~ls~N~l~~~~p~~~~---~l~~L~~L~l~~n~~ 161 (165)
....+++|+.|++.+|.+....+..+. .+++|++|+++.|+.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 113578999999999888643333332 477899999998874
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.84 E-value=0.00013 Score=56.60 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=73.3
Q ss_pred hhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccC
Q 038525 50 QCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKI 124 (165)
Q Consensus 50 ~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l 124 (165)
..|.... .|+.+.+..+... .- ...|.+++.|+.+.+.. .++..-...|.++.+|+.+++..+ ++ +|.++
T Consensus 259 ~aF~~c~-~L~~i~lp~~~~~-I~-~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 259 HAFDSCA-YLASVKMPDSVVS-IG-TGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTCS-SCCEEECCTTCCE-EC-TTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ceeeecc-cccEEecccccce-ec-CcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3455555 6777777665432 33 66778888888888863 455344456778888888888765 33 78888
Q ss_pred cCCCEEeccCCCCCCcccccccCCCCCcEEEccCCc
Q 038525 125 LLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 125 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.+|+.+.+..+ ++..-...|.++.+|+.+.+.++.
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 88888888654 554445678888888888887764
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.76 E-value=9.3e-05 Score=57.34 Aligned_cols=103 Identities=13% Similarity=0.070 Sum_probs=62.7
Q ss_pred hhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCcc
Q 038525 49 SQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGK 123 (165)
Q Consensus 49 ~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~ 123 (165)
...|.... .++.+....+.+. ...|..+.+|+.+.+..+ ++..-...|..+.+|+.+++..+ ++ +|.+
T Consensus 269 ~~~F~~~~-~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 341 (394)
T 4fs7_A 269 GSLFYNCS-GLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRG 341 (394)
T ss_dssp SCTTTTCT-TCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTT
T ss_pred cccccccc-ccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccC
Confidence 33455444 5555555544322 445667777777777654 44234456677777777777644 33 6777
Q ss_pred CcCCCEEeccCCCCCCcccccccCCCCCcEEEccCC
Q 038525 124 ILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 124 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
+++|+.+++..+ ++..-..+|.++.+|+.+.+..+
T Consensus 342 c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 342 CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 777777777665 55344456777777777777544
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.69 E-value=0.00012 Score=48.30 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=42.9
Q ss_pred EEEeecCCCC-cccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC
Q 038525 61 HIELVECSIK-GELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT 119 (165)
Q Consensus 61 ~L~ls~n~l~-~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~ 119 (165)
+++.+++.++ ..+ |..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~v-P~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASL-PTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTS-CSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccC-CCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6778888876 345 54433 46899999999998555566788899999999999886
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.62 E-value=0.00025 Score=54.44 Aligned_cols=96 Identities=11% Similarity=0.023 Sum_probs=49.8
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCccCcCCCEEec
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIGKILLLQNLDL 132 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~~l~~L~~L~l 132 (165)
.|+.+.+..+ ++..- ...|.++..|+.+.+..+ ++..-...|..+.+|+.+.+.++.++ .|.++.+|+.+.+
T Consensus 241 ~L~~i~lp~~-v~~I~-~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIG-SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CCEEC-TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-ccEeC-ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 4555555544 33122 445555566666655433 33122334555666666666655554 5566666666666
Q ss_pred cCCCCCCcccccccCCCCCcEEEcc
Q 038525 133 SHNNLSDSQFRFVIPYLRLSVQCVW 157 (165)
Q Consensus 133 s~N~l~~~~p~~~~~l~~L~~L~l~ 157 (165)
..+ ++..-..+|.++.+|+.+.+.
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEEC
Confidence 543 432333456666666655553
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.55 E-value=0.0003 Score=54.48 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=48.7
Q ss_pred chhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CCc
Q 038525 48 SSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EIG 122 (165)
Q Consensus 48 ~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~ 122 (165)
+...|.... +|+.+.+..+ +. .++...|.++++|+.+++..+ ++..-...|.++.+|+.+++..+ ++ +|.
T Consensus 289 ~~~~F~~~~-~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 289 PEKTFYGCS-SLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp CTTTTTTCT-TCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred ccccccccc-cccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 333444444 4555555443 33 222445555666666665433 33233345555566666665544 32 555
Q ss_pred cCcCCCEEeccCCCCCCcccccccCCCCCcE
Q 038525 123 KILLLQNLDLSHNNLSDSQFRFVIPYLRLSV 153 (165)
Q Consensus 123 ~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~ 153 (165)
++++|+.+++..+ ++ .+...|.++++|+.
T Consensus 364 ~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 364 GCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred CCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 5666666655443 22 23344555555544
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.52 E-value=3.6e-05 Score=54.49 Aligned_cols=102 Identities=13% Similarity=0.044 Sum_probs=73.7
Q ss_pred CeeEEEeecC-CCCc----ccCCcccCCCCCCcEEEcccCcCCCCCC----cCcCCCCCCCEEEcCCCCCC---------
Q 038525 58 GWYHIELVEC-SIKG----ELGSLNFSCFSNLQYINLWNNDLSGSIP----PQIGSLLKLKYLNLRWKNLT--------- 119 (165)
Q Consensus 58 ~L~~L~ls~n-~l~~----~~~p~~~~~l~~L~~L~ls~N~l~~~~p----~~~~~l~~L~~L~ls~n~l~--------- 119 (165)
.|++|++++| .+.. .+ ...+..-+.|+.|+|++|.+...-- ..+..-+.|+.|+|++|.|+
T Consensus 42 ~L~~L~L~~nn~igd~ga~~l-a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSL-IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHH-HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHH-HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 6889999986 7652 13 3445667889999999999973222 23345578999999999998
Q ss_pred CCccCcCCCEEeccCC---CCCC----cccccccCCCCCcEEEccCCc
Q 038525 120 EIGKILLLQNLDLSHN---NLSD----SQFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 120 ~~~~l~~L~~L~ls~N---~l~~----~~p~~~~~l~~L~~L~l~~n~ 160 (165)
.+..-+.|+.|+|++| .+.. .+.+.+..-+.|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4556677999999865 3331 234566777899999998764
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.34 E-value=0.00033 Score=54.26 Aligned_cols=107 Identities=15% Similarity=0.133 Sum_probs=74.9
Q ss_pred CchhhhhccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC-----CC
Q 038525 47 DSSQCFRSLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT-----EI 121 (165)
Q Consensus 47 ~~~~~~~~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~ 121 (165)
+....|.... .|+.+.+. +.+. .++...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++ +|
T Consensus 279 I~~~aF~~c~-~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 279 IGTGAFMNCP-ALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp ECTTTTTTCT-TCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred ecCccccccc-ccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 3455677777 78899986 4455 343778999999999999865 55355668999999999999765 43 89
Q ss_pred ccCcCCCEEeccCCCCCCcccccccCCCCCcEEEccCCcc
Q 038525 122 GKILLLQNLDLSHNNLSDSQFRFVIPYLRLSVQCVWTCHS 161 (165)
Q Consensus 122 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~l~~n~~ 161 (165)
.++++|+.+++.++... -..+....+|+.+.+..+..
T Consensus 354 ~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred hCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 99999999999987643 24677788999998877654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.26 E-value=0.00037 Score=45.85 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=34.5
Q ss_pred ccccCeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCC
Q 038525 54 SLQLGWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLS 95 (165)
Q Consensus 54 ~l~~~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~ 95 (165)
.++.++++|+|++|+++... +..|..+++|++|+|++|.+.
T Consensus 28 ~lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 28 AFPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CCCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred CCCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence 34546779999999999544 788899999999999999875
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.12 E-value=0.0002 Score=50.60 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=62.3
Q ss_pred cCCCCCCcEEEcccC-cCCCC----CCcCcCCCCCCCEEEcCCCCCC---------CCccCcCCCEEeccCCCCCCc---
Q 038525 78 FSCFSNLQYINLWNN-DLSGS----IPPQIGSLLKLKYLNLRWKNLT---------EIGKILLLQNLDLSHNNLSDS--- 140 (165)
Q Consensus 78 ~~~l~~L~~L~ls~N-~l~~~----~p~~~~~l~~L~~L~ls~n~l~---------~~~~l~~L~~L~ls~N~l~~~--- 140 (165)
+..-+.|+.|+|++| .|... +-..+..-..|+.|+|++|.+. .+..-+.|+.|+|+.|.|...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999986 77521 2234556788999999999998 344557899999999999632
Q ss_pred -ccccccCCCCCcEEEccCCc
Q 038525 141 -QFRFVIPYLRLSVQCVWTCH 160 (165)
Q Consensus 141 -~p~~~~~l~~L~~L~l~~n~ 160 (165)
+-+.+..-+.|+.|++++|.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHhhCCceeEEECCCCc
Confidence 23456677789999998764
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.10 E-value=0.0032 Score=48.20 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=75.1
Q ss_pred CeeEEEeecCCCCcccCCcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcCCCCCC----CCccCcCCCEEecc
Q 038525 58 GWYHIELVECSIKGELGSLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLRWKNLT----EIGKILLLQNLDLS 133 (165)
Q Consensus 58 ~L~~L~ls~n~l~~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls~n~l~----~~~~l~~L~~L~ls 133 (165)
.++.+.+..+ +...- ...|.++..|+.+.+..+ ++..-...|..+..|+.+.+..+--+ .|.++++|+.+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~-~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 218 NLKKITITSG-VTTLG-DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SCSEEECCTT-CCEEC-TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeccc-eeEEc-cccccCCccceEEEcCCC-ccEeCccccceeehhccccccccceecccccccccccccccccc
Confidence 4556666554 33233 667888899999999776 55345567888999999998765222 78899999999999
Q ss_pred CCCCCCcccccccCCCCCcEEEccCC
Q 038525 134 HNNLSDSQFRFVIPYLRLSVQCVWTC 159 (165)
Q Consensus 134 ~N~l~~~~p~~~~~l~~L~~L~l~~n 159 (165)
++.++..-...|.++.+|+.+.+.++
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc
Confidence 99888555678999999999999654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.32 E-value=14 Score=22.42 Aligned_cols=39 Identities=15% Similarity=-0.013 Sum_probs=18.0
Q ss_pred CcccCCCCCCcEEEcccCcCCCCCCcCcCCCCCCCEEEcC
Q 038525 75 SLNFSCFSNLQYINLWNNDLSGSIPPQIGSLLKLKYLNLR 114 (165)
Q Consensus 75 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ls 114 (165)
...|.++++|+.+.+..+- +.+-...|..+.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEc
Confidence 3445555555555554432 21333344455555554444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.54 E-value=18 Score=21.92 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=33.7
Q ss_pred CcCCCCCCcCcCCCCCCCEEEcCCCC--CC--CCccCcCCCEEeccCC
Q 038525 92 NDLSGSIPPQIGSLLKLKYLNLRWKN--LT--EIGKILLLQNLDLSHN 135 (165)
Q Consensus 92 N~l~~~~p~~~~~l~~L~~L~ls~n~--l~--~~~~l~~L~~L~ls~N 135 (165)
..++.+-...|.++.+|+.+.+..+- |. +|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcCC
Confidence 34554556678899999999998763 33 8999999999988764
Done!