BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038527
         (630 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
           A Small Segment Of Adjacent Coiled-Coil Region
 pdb|4E8U|C Chain C, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With
           A Small Segment Of Adjacent Coiled-Coil Region
          Length = 172

 Score =  182 bits (461), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 114/168 (67%)

Query: 110 TDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG 169
           +D   D+ LVYPW GIV NI T + +DGR  GESGSKLRDE+  +GFNP +V PLW+  G
Sbjct: 1   SDCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG 60

Query: 170 HSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKS 229
           HSG A+VEF KDW G  N ++F+K++ VD HGKKD+         LYGWIAR DDYN  +
Sbjct: 61  HSGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNN 120

Query: 230 LIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEME 277
           +IG++LRK GDLKT++    E+ RK   LV NL + +E K    KE+E
Sbjct: 121 IIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIE 168


>pdb|1ODH|A Chain A, Structure Of The Gcm Domain Bound To Dna
          Length = 174

 Score = 32.3 bits (72), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 14/124 (11%)

Query: 83  EKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYV-- 140
           + YV K++   D    +   SS  ++ T++   ++L    +G+V   +    E+GR +  
Sbjct: 38  DSYV-KHIYSSDDRNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYL 96

Query: 141 -GESGSKLRDEFRSKGF----NPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSF 195
                 K R + + K       PLK+ P    RGH GF V  F++    F   I F+   
Sbjct: 97  RPAICDKARQKQQRKSCPNCNGPLKLIPC---RGHGGFPVTNFWRHDGRF---IFFQSKG 150

Query: 196 EVDH 199
           E DH
Sbjct: 151 EHDH 154


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,531,144
Number of Sequences: 62578
Number of extensions: 697749
Number of successful extensions: 1720
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1690
Number of HSP's gapped (non-prelim): 42
length of query: 630
length of database: 14,973,337
effective HSP length: 105
effective length of query: 525
effective length of database: 8,402,647
effective search space: 4411389675
effective search space used: 4411389675
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)