BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038527
         (630 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana
           GN=SGS3 PE=1 SV=1
          Length = 625

 Score = 36.2 bits (82), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 136/323 (42%), Gaps = 32/323 (9%)

Query: 40  YRCPFCR-GKKETD-YLYKELLQHASDVGRSRSRGAREKAQHLALEKYVSKYLVVKDRSQ 97
           + CP C+ G    D Y    LL HA      R++GAR    H  L + + K L ++  S 
Sbjct: 226 WHCPACQNGPGAIDWYNLHPLLAHA------RTKGARRVKLHRELAEVLEKDLQMRGASV 279

Query: 98  LEPG-TSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGF 156
           +  G    +   + + + D  +V+P + I+ N +  + ++ +++G    +L + F    +
Sbjct: 280 IPCGEIYGQWKGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDK--Y 337

Query: 157 NPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAI-----MFEKSFEVDHHGKKDFYAVKNL 211
             L+    +  +GH G +V+ F     G+  A      + E   +    G+K       +
Sbjct: 338 EALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQKRSMFSGGV 397

Query: 212 GDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDM 271
             +LYG++A   D +   +   H +    LK        + +    +V    R +   + 
Sbjct: 398 -RQLYGFLATKQDLD---IFNQHSQGKTRLKF-------ELKSYQEMVVKELRQISEDNQ 446

Query: 272 RYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLE 331
           +    + K  + + +  +  E ++ M+    E++R+  +      Q+  ++HE+   +++
Sbjct: 447 QLNYFKNKLSKQNKHAKVLEESLEIMS----EKLRRTAEDNRIVRQRTKMQHEQNREEMD 502

Query: 332 AQKMQLEEHEKQL-QYREAKNET 353
           A      +  KQ+ + R+AK E 
Sbjct: 503 AHDRFFMDSIKQIHERRDAKEEN 525


>sp|A1Y2B7|SGS3_MAIZE Protein SUPPRESSOR OF GENE SILENCING 3 homolog OS=Zea mays GN=SGS3
           PE=1 SV=1
          Length = 594

 Score = 35.8 bits (81), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 124/314 (39%), Gaps = 37/314 (11%)

Query: 40  YRCPFCRGKKETDYLYKELLQHASDVGRSRSRGAREKAQHLALEKYVSKYLVVKDRSQLE 99
           + CP C+        YK L      V  +R++G+     H  L   + + L  +  S L 
Sbjct: 194 WHCPACKNGPGAIDWYKGL---QPLVSHARTKGSTRVKLHRELAALLEEELSRRGTSVLP 250

Query: 100 PGTSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL 159
            G      K      D+ +V+P + IV N   ++ ED ++ G    +L D F    +   
Sbjct: 251 AGEQFGKWKGLQESTDREIVWPPMVIVMNTFLEKDEDDKWKGMGNQELLDYFGE--YEAS 308

Query: 160 KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNL----GDK- 214
           K    +   GH G +V+ F     G+  A    K F V+    ++ + ++ +    G K 
Sbjct: 309 KARHAYGPSGHRGMSVLIFESSAVGYMEAERLHKHF-VNQGTDRNSWHLRKVRFVPGGKR 367

Query: 215 -LYGWIARDDDY-------NSKSLIGDHLRKNGDLKTVSGKE-AEDQRKTSTLVTNLTRT 265
            LYG++A  +D        + KS +   +R   ++  +  K+ +ED ++ + L   + +T
Sbjct: 368 QLYGFLANKEDMEAFNKHCHGKSRLKYEMRSYNEMVVIQMKQMSEDNQQLNYLKNKMVKT 427

Query: 266 ----------LEVKDMRYKE-MEMKYLETSTYLDLTMEQMDEMNKSRN------EEIRKM 308
                     L V   + +E +E      S   +  ME  +EM           E+I K 
Sbjct: 428 EQRSKAVEESLGVVTQKLRETIEENIFVRSKAKEKHMEYEEEMKSQEEIFHGLIEDIHKA 487

Query: 309 QQSAHDHFQKIYLE 322
            +     F+K+  E
Sbjct: 488 TEDKEKQFEKLLQE 501


>sp|P54697|MYOJ_DICDI Myosin-J heavy chain OS=Dictyostelium discoideum GN=myoJ PE=4 SV=2
          Length = 2245

 Score = 34.3 bits (77), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 27/172 (15%)

Query: 294  MDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNET 353
            +D   K +  EI K+QQ      Q+++   E+  S  ++ +++  E  KQL      N+ 
Sbjct: 1647 IDSTIKEKENEISKLQQQLETSNQQLHQLKEELNSMKQSNQLESTEQSKQL------NQL 1700

Query: 354  ERKKLHSEKIMNERATLEQKKADEKVW---RLAQVHKEEKEKLRRKIIELQKGLD-AKQA 409
             ++    + + NE +    K+ D+ V+   ++    KE++ K +R  +ELQ+ +D  KQ 
Sbjct: 1701 IQENQQLKSVTNEIS----KQLDDAVFENQKINNTIKEQEIKSKRMSVELQQHIDEGKQQ 1756

Query: 410  LELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEI----KEKEGEMDVVEA 457
               EI+Q + TI  +K  +      Q + D + KEI    +E+E +M +VE+
Sbjct: 1757 ---EIQQLQSTIAQLKQQQ------QSETDRLEKEIQQMKRERETQMKLVES 1799


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.130    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 233,889,527
Number of Sequences: 539616
Number of extensions: 10216322
Number of successful extensions: 54092
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 3216
Number of HSP's that attempted gapping in prelim test: 40013
Number of HSP's gapped (non-prelim): 10052
length of query: 630
length of database: 191,569,459
effective HSP length: 124
effective length of query: 506
effective length of database: 124,657,075
effective search space: 63076479950
effective search space used: 63076479950
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)